-- dump date 20140619_165056 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 196162000001 SEQ_END SEQ_END NC_008697.1 307814 307814 DR NC_008697.1; contig end 307814..307814 Nocardioides sp. JS614 196162000002 SEQ_END SEQ_END NC_008699.1 4985871 4985871 DR NC_008699.1; contig end 4985871..4985871 Nocardioides sp. JS614 YP_919150.1 CDS Noca_4701 NC_008697.1 107 700 D hypothetical protein 107..700 Nocardioides sp. JS614 4595450 YP_919151.1 CDS Noca_4702 NC_008697.1 746 1240 R KEGG: rha:RHA1_ro03109 hypothetical protein; hypothetical protein complement(746..1240) Nocardioides sp. JS614 4595347 YP_919152.1 CDS Noca_4703 NC_008697.1 1295 2041 R hypothetical protein complement(1295..2041) Nocardioides sp. JS614 4595456 YP_919153.1 CDS Noca_4704 NC_008697.1 2057 2761 R PFAM: Chromosomal replication initiator, DnaA C-terminal domain; KEGG: syw:SYNW1536 chromosomal replication initiator protein DnaA; chromosomal replication initiator DnaA domain-containing protein complement(2057..2761) Nocardioides sp. JS614 4595349 YP_919154.1 CDS Noca_4705 NC_008697.1 2767 3453 R hypothetical protein complement(2767..3453) Nocardioides sp. JS614 4595350 YP_919155.1 CDS Noca_4706 NC_008697.1 3468 4940 R KEGG: sma:SAV4509 conjugative transfer gene complex protein; Type IV secretory pathway VirD4 components-like protein complement(3468..4940) Nocardioides sp. JS614 4595216 YP_919156.1 CDS Noca_4707 NC_008697.1 4977 5858 R KEGG: mmr:Mmar10_0854 hypothetical protein; hypothetical protein complement(4977..5858) Nocardioides sp. JS614 4595352 YP_919157.1 CDS Noca_4708 NC_008697.1 6136 8802 R hypothetical protein complement(6136..8802) Nocardioides sp. JS614 4595353 YP_919158.1 CDS Noca_4709 NC_008697.1 8877 10412 R KEGG: sco:SCO6878 ATP-binding protein; hypothetical protein complement(8877..10412) Nocardioides sp. JS614 4595217 YP_919159.1 CDS Noca_4710 NC_008697.1 10415 10738 R hypothetical protein complement(10415..10738) Nocardioides sp. JS614 4595356 YP_919160.1 CDS Noca_4711 NC_008697.1 10977 11384 R hypothetical protein complement(10977..11384) Nocardioides sp. JS614 4595213 YP_919161.1 CDS Noca_4712 NC_008697.1 11586 13151 R KEGG: sco:SCO3515 integral membrane protein; hypothetical protein complement(11586..13151) Nocardioides sp. JS614 4595348 YP_919162.1 CDS Noca_4713 NC_008697.1 13148 14524 R KEGG: fal:FRAAL0037 hypothetical protein; putative membrane protein; hypothetical protein complement(13148..14524) Nocardioides sp. JS614 4595455 YP_919163.1 CDS Noca_4714 NC_008697.1 14521 15339 R hypothetical protein complement(14521..15339) Nocardioides sp. JS614 4595359 YP_919164.1 CDS Noca_4715 NC_008697.1 15341 15670 R hypothetical protein complement(15341..15670) Nocardioides sp. JS614 4595212 YP_919165.1 CDS Noca_4716 NC_008697.1 15690 16622 R hypothetical protein complement(15690..16622) Nocardioides sp. JS614 4595351 YP_919166.1 CDS Noca_4717 NC_008697.1 16619 16915 R hypothetical protein complement(16619..16915) Nocardioides sp. JS614 4595362 YP_919167.1 CDS Noca_4718 NC_008697.1 16944 17834 R hypothetical protein complement(16944..17834) Nocardioides sp. JS614 4595355 YP_919168.1 CDS Noca_4719 NC_008697.1 18154 21393 R PFAM: Peptidoglycan-binding LysM; KEGG: sma:SAV192 hypothetical protein; peptidoglycan-binding LysM complement(18154..21393) Nocardioides sp. JS614 4595354 YP_919169.1 CDS Noca_4720 NC_008697.1 21419 21844 R KEGG: fra:Francci3_1731 putative membrane protein; hypothetical protein complement(21419..21844) Nocardioides sp. JS614 4595364 YP_919170.1 CDS Noca_4721 NC_008697.1 21841 22323 R PFAM: TadE family protein; KEGG: sma:SAV190 hypothetical protein; TadE family protein complement(21841..22323) Nocardioides sp. JS614 4595210 YP_919171.1 CDS Noca_4722 NC_008697.1 22554 22967 R KEGG: sma:SAV189 hypothetical protein; hypothetical protein complement(22554..22967) Nocardioides sp. JS614 4595357 YP_919172.1 CDS Noca_4723 NC_008697.1 23016 23213 R hypothetical protein complement(23016..23213) Nocardioides sp. JS614 4595454 YP_919173.1 CDS Noca_4724 NC_008697.1 23250 24158 R KEGG: sco:SCO4528 integral membrane protein; integral membrane protein complement(23250..24158) Nocardioides sp. JS614 4595361 YP_919174.1 CDS Noca_4725 NC_008697.1 24370 25497 D PFAM: phage integrase family protein; KEGG: nfa:pnf2830 putative recombinase; phage integrase family protein 24370..25497 Nocardioides sp. JS614 4595360 YP_919175.1 CDS Noca_4726 NC_008697.1 25502 25846 D KEGG: nfa:pnf2840 hypothetical protein; hypothetical protein 25502..25846 Nocardioides sp. JS614 4595363 YP_919176.1 CDS Noca_4727 NC_008697.1 25858 27630 D KEGG: nfa:pnf2850 hypothetical protein; hypothetical protein 25858..27630 Nocardioides sp. JS614 4595453 YP_919177.1 CDS Noca_4728 NC_008697.1 27636 28529 R KEGG: sco:SCO4527 integral membrane protein; integral membrane protein complement(27636..28529) Nocardioides sp. JS614 4595478 YP_919178.1 CDS Noca_4729 NC_008697.1 28529 30028 R PFAM: type II secretion system protein E; KEGG: sco:SCO4526 protein kinase; type II secretion system protein E complement(28529..30028) Nocardioides sp. JS614 4595479 YP_919179.1 CDS Noca_4730 NC_008697.1 30028 30861 R KEGG: sco:SCO4525 hypothetical protein; hypothetical protein complement(30028..30861) Nocardioides sp. JS614 4595480 YP_919180.1 CDS Noca_4731 NC_008697.1 30861 31640 R PFAM: SAF domain; KEGG: fra:Francci3_1738 putative membrane protein; SAF domain-containing protein complement(30861..31640) Nocardioides sp. JS614 4595451 YP_919181.1 CDS Noca_4732 NC_008697.1 31643 32554 R KEGG: sco:SCP1.166 putative atp/gtp-binding protein; hypothetical protein complement(31643..32554) Nocardioides sp. JS614 4595475 YP_919182.1 CDS Noca_4733 NC_008697.1 32551 33174 R hypothetical protein complement(32551..33174) Nocardioides sp. JS614 4595476 YP_919183.1 CDS Noca_4734 NC_008697.1 33767 34123 D PFAM: regulatory protein, ArsR; KEGG: sth:STH2610 hypothetical protein; regulatory protein, ArsR 33767..34123 Nocardioides sp. JS614 4595477 YP_919184.1 CDS Noca_4735 NC_008697.1 34136 34738 D hypothetical protein 34136..34738 Nocardioides sp. JS614 4595473 YP_919185.1 CDS Noca_4736 NC_008697.1 34735 35094 D hypothetical protein 34735..35094 Nocardioides sp. JS614 4595474 YP_919186.1 CDS Noca_4737 NC_008697.1 35200 37470 D hypothetical protein 35200..37470 Nocardioides sp. JS614 4595472 YP_919187.1 CDS Noca_4738 NC_008697.1 37554 38579 R PFAM: protein of unknown function DUF1016; KEGG: cch:Cag_0721 hypothetical protein; hypothetical protein complement(37554..38579) Nocardioides sp. JS614 4595452 YP_919188.1 CDS Noca_4739 NC_008697.1 38725 39390 R hypothetical protein complement(38725..39390) Nocardioides sp. JS614 4595471 YP_919189.1 CDS Noca_4740 NC_008697.1 39577 40185 R KEGG: rha:RHA1_ro08604 hypothetical protein; hypothetical protein complement(39577..40185) Nocardioides sp. JS614 4595470 YP_919190.1 CDS Noca_4741 NC_008697.1 40182 41153 R PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: rha:RHA1_ro10013 possible chromosome partitioning protein ParA; cobyrinic acid a,c-diamide synthase complement(40182..41153) Nocardioides sp. JS614 4595469 YP_919191.1 CDS Noca_4742 NC_008697.1 42136 42606 R hypothetical protein complement(42136..42606) Nocardioides sp. JS614 4595468 YP_919192.1 CDS Noca_4743 NC_008697.1 42626 44032 R hypothetical protein complement(42626..44032) Nocardioides sp. JS614 4595467 YP_919193.1 CDS Noca_4744 NC_008697.1 44149 44658 R hypothetical protein complement(44149..44658) Nocardioides sp. JS614 4595466 YP_919194.1 CDS Noca_4745 NC_008697.1 44736 44972 R hypothetical protein complement(44736..44972) Nocardioides sp. JS614 4595465 YP_919195.1 CDS Noca_4746 NC_008697.1 44984 45325 R hypothetical protein complement(44984..45325) Nocardioides sp. JS614 4595464 YP_919196.1 CDS Noca_4747 NC_008697.1 45479 51256 R PFAM: helicase domain protein; SMART: DEAD-like helicases-like; KEGG: nfa:pnf11080 hypothetical protein; helicase domain-containing protein complement(45479..51256) Nocardioides sp. JS614 4595462 YP_919197.1 CDS Noca_4748 NC_008697.1 51448 52737 D PFAM: protein of unknown function DUF1173; KEGG: mes:Meso_4154 protein of unknown function DUF1173; hypothetical protein 51448..52737 Nocardioides sp. JS614 4595463 YP_919198.1 CDS Noca_4749 NC_008697.1 52979 53926 R hypothetical protein complement(52979..53926) Nocardioides sp. JS614 4595461 YP_919199.1 CDS Noca_4750 NC_008697.1 54265 55326 R KEGG: mmc:Mmcs_5629 hypothetical protein; hypothetical protein complement(54265..55326) Nocardioides sp. JS614 4595460 YP_919200.1 CDS Noca_4751 NC_008697.1 55406 56023 R hypothetical protein complement(55406..56023) Nocardioides sp. JS614 4595459 YP_919201.1 CDS Noca_4752 NC_008697.1 56046 56783 R hypothetical protein complement(56046..56783) Nocardioides sp. JS614 4595458 YP_919202.1 CDS Noca_4753 NC_008697.1 57077 57583 D hypothetical protein 57077..57583 Nocardioides sp. JS614 4595457 YP_919203.1 CDS Noca_4754 NC_008697.1 57846 58148 R hypothetical protein complement(57846..58148) Nocardioides sp. JS614 4595228 YP_919204.1 CDS Noca_4755 NC_008697.1 58262 58438 R hypothetical protein complement(58262..58438) Nocardioides sp. JS614 4595227 YP_919205.1 CDS Noca_4756 NC_008697.1 58451 58765 R hypothetical protein complement(58451..58765) Nocardioides sp. JS614 4595225 YP_919206.1 CDS Noca_4757 NC_008697.1 58762 59028 R hypothetical protein complement(58762..59028) Nocardioides sp. JS614 4595226 YP_919207.1 CDS Noca_4758 NC_008697.1 59164 59838 R KEGG: rha:RHA1_ro07281 hypothetical protein; hypothetical protein complement(59164..59838) Nocardioides sp. JS614 4595223 YP_919208.1 CDS Noca_4759 NC_008697.1 59835 60236 R hypothetical protein complement(59835..60236) Nocardioides sp. JS614 4595221 YP_919209.1 CDS Noca_4760 NC_008697.1 61225 62826 D PFAM: SMC domain protein; KEGG: rsp:RSP_3757 hypothetical protein; SMC domain-containing protein 61225..62826 Nocardioides sp. JS614 4595222 YP_919210.1 CDS Noca_4761 NC_008697.1 62813 63850 D KEGG: rsp:RSP_3756 putative DNA helicase II / ATP-dependent DNA helicase PcrA; putative DNA helicase II / ATP-dependent DNA helicase PcrA 62813..63850 Nocardioides sp. JS614 4595224 YP_919211.1 CDS Noca_4762 NC_008697.1 63996 64403 R hypothetical protein complement(63996..64403) Nocardioides sp. JS614 4595218 YP_919212.1 CDS Noca_4763 NC_008697.1 64787 65308 D hypothetical protein 64787..65308 Nocardioides sp. JS614 4595220 YP_919213.1 CDS Noca_4764 NC_008697.1 65853 66551 R hypothetical protein complement(65853..66551) Nocardioides sp. JS614 4595219 YP_919214.1 CDS Noca_4765 NC_008697.1 66551 67213 R hypothetical protein complement(66551..67213) Nocardioides sp. JS614 4595214 YP_919215.1 CDS Noca_4766 NC_008697.1 67321 68067 D PFAM: phage Gp37Gp68 family protein; KEGG: mbo:Mb2753 hypothetical protein; phage Gp37Gp68 family protein 67321..68067 Nocardioides sp. JS614 4595215 YP_919216.1 CDS Noca_4767 NC_008697.1 68064 69017 R KEGG: mbo:Mb2754c hypothetical protein; hypothetical protein complement(68064..69017) Nocardioides sp. JS614 4595370 YP_919217.1 CDS Noca_4768 NC_008697.1 69343 70566 R KEGG: fra:Francci3_2839 McrBC 5-methylcytosine restriction system component-like; McrBC 5-methylcytosine restriction system component-like protein complement(69343..70566) Nocardioides sp. JS614 4595368 YP_919218.1 CDS Noca_4769 NC_008697.1 70553 73252 R PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: fra:Francci3_2840 AAA_5 ATPase associated with various cellular activities; ATPase complement(70553..73252) Nocardioides sp. JS614 4595371 YP_919219.1 CDS Noca_4770 NC_008697.1 73249 77244 R KEGG: tfu:Tfu_0724 putative type II DNA modification enzyme; putative type II DNA modification enzyme complement(73249..77244) Nocardioides sp. JS614 4595369 YP_919220.1 CDS Noca_4771 NC_008697.1 77241 80102 R PFAM: helicase domain protein; SMART: DEAD-like helicases-like; KEGG: dge:Dgeo_1544 helicase-like protein; helicase domain-containing protein complement(77241..80102) Nocardioides sp. JS614 4595373 YP_919221.1 CDS Noca_4772 NC_008697.1 80099 85324 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: dge:Dgeo_1543 DEAD/DEAH box helicase-like protein; DEAD/DEAH box helicase domain-containing protein complement(80099..85324) Nocardioides sp. JS614 4595374 YP_919222.1 CDS Noca_4773 NC_008697.1 85547 85846 D hypothetical protein 85547..85846 Nocardioides sp. JS614 4595377 YP_919223.1 CDS Noca_4774 NC_008697.1 86023 86397 R hypothetical protein complement(86023..86397) Nocardioides sp. JS614 4595375 YP_919224.1 CDS Noca_4775 NC_008697.1 86485 86778 R hypothetical protein complement(86485..86778) Nocardioides sp. JS614 4595378 YP_919225.1 CDS Noca_4776 NC_008697.1 87008 88855 R PFAM: C-5 cytosine-specific DNA methylase; KEGG: nfa:nfa40370 hypothetical protein; C-5 cytosine-specific DNA methylase complement(87008..88855) Nocardioides sp. JS614 4595376 YP_919226.1 CDS Noca_4777 NC_008697.1 89360 89572 R hypothetical protein complement(89360..89572) Nocardioides sp. JS614 4595381 YP_919227.1 CDS Noca_4780 NC_008697.1 91933 95640 R PFAM: helicase domain protein; KEGG: mmc:Mmcs_0813 helicase-like protein; helicase domain-containing protein complement(91933..95640) Nocardioides sp. JS614 4595380 YP_919228.1 CDS Noca_4781 NC_008697.1 95741 96619 D KEGG: net:Neut_0370 conserved hypothetical protein; hypothetical protein 95741..96619 Nocardioides sp. JS614 4595390 YP_919229.1 CDS Noca_4782 NC_008697.1 96729 97502 D PFAM: CopG domain protein DNA-binding domain protein; YfbU family protein; KEGG: blo:BL0816 hypothetical protein; YfbU family protein 96729..97502 Nocardioides sp. JS614 4595385 YP_919230.1 CDS Noca_4783 NC_008697.1 97499 98293 D hypothetical protein 97499..98293 Nocardioides sp. JS614 4595387 YP_919231.1 CDS Noca_4784 NC_008697.1 98323 102420 R KEGG: mmc:Mmcs_0812 hypothetical protein; hypothetical protein complement(98323..102420) Nocardioides sp. JS614 4595372 YP_919232.1 CDS Noca_4785 NC_008697.1 102420 104594 R PFAM: helicase domain protein; KEGG: mmc:Mmcs_0811 helicase-like protein; helicase domain-containing protein complement(102420..104594) Nocardioides sp. JS614 4595382 YP_919233.1 CDS Noca_4786 NC_008697.1 104853 106181 D PFAM: transposase, IS4 family protein; KEGG: mmc:Mmcs_5428 TnpC protein; IS4 family transposase 104853..106181 Nocardioides sp. JS614 4595391 YP_919234.1 CDS Noca_4787 NC_008697.1 106284 107300 R SMART: DEAD-like helicases-like; KEGG: mmc:Mmcs_0811 helicase-like protein; DEAD-like helicases-like protein complement(106284..107300) Nocardioides sp. JS614 4595389 YP_919235.1 CDS Noca_4788 NC_008697.1 107615 107899 R KEGG: nfa:nfa41400 putative Rossmann-fold nucleotide-binding protein; putative Rossmann-fold nucleotide-binding protein complement(107615..107899) Nocardioides sp. JS614 4595388 YP_919236.1 CDS Noca_4789 NC_008697.1 107896 108654 R PFAM: SMF family protein; KEGG: sma:SAV2631 putative DNA processing Smf-family protein; SMF family protein complement(107896..108654) Nocardioides sp. JS614 4595386 YP_919237.1 CDS Noca_4790 NC_008697.1 108651 108812 R hypothetical protein complement(108651..108812) Nocardioides sp. JS614 4595393 YP_919238.1 CDS Noca_4791 NC_008697.1 108826 109593 R KEGG: tfu:Tfu_2217 hypothetical protein; hypothetical protein complement(108826..109593) Nocardioides sp. JS614 4595395 YP_919239.1 CDS Noca_4792 NC_008697.1 109873 111108 D PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: fra:Francci3_3532 phage integrase; phage integrase family protein 109873..111108 Nocardioides sp. JS614 4595399 YP_919240.1 CDS Noca_4793 NC_008697.1 111117 113510 D PFAM: phage integrase family protein; KEGG: rha:RHA1_ro10276 possible DNA integrase/recombinase; phage integrase family protein 111117..113510 Nocardioides sp. JS614 4595392 YP_919241.1 CDS Noca_4794 NC_008697.1 113995 114351 D hypothetical protein 113995..114351 Nocardioides sp. JS614 4595396 YP_919242.1 CDS Noca_4795 NC_008697.1 114725 114919 R hypothetical protein complement(114725..114919) Nocardioides sp. JS614 4595394 YP_919243.1 CDS Noca_4796 NC_008697.1 115237 115695 R hypothetical protein complement(115237..115695) Nocardioides sp. JS614 4595383 YP_919244.1 CDS Noca_4797 NC_008697.1 115988 117583 D PFAM: ParB domain protein nuclease; KEGG: rha:RHA1_ro03182 possible chromosome partitioning protein-like protein; nuclease 115988..117583 Nocardioides sp. JS614 4595400 YP_919245.1 CDS Noca_4798 NC_008697.1 117637 118164 R hypothetical protein complement(117637..118164) Nocardioides sp. JS614 4595402 YP_919246.1 CDS Noca_4799 NC_008697.1 118142 118561 R hypothetical protein complement(118142..118561) Nocardioides sp. JS614 4595397 YP_919247.1 CDS Noca_4800 NC_008697.1 118859 124762 D PFAM: TOPRIM domain protein; DNA primase catalytic core, N-terminal domain; SMART: Toprim sub domain protein; KEGG: mmc:Mmcs_1430 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member-like protein; DNA primase catalytic core 118859..124762 Nocardioides sp. JS614 4595398 YP_919248.1 CDS Noca_4801 NC_008697.1 124926 127316 R PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: psb:Psyr_3605 trimethylamine-N-oxide reductase (cytochrome c); molybdopterin oxidoreductase complement(124926..127316) Nocardioides sp. JS614 4595405 YP_919249.1 CDS Noca_4802 NC_008697.1 127491 127763 R hypothetical protein complement(127491..127763) Nocardioides sp. JS614 4595367 YP_919250.1 CDS Noca_4803 NC_008697.1 128146 128472 R hypothetical protein complement(128146..128472) Nocardioides sp. JS614 4595403 YP_919251.1 CDS Noca_4804 NC_008697.1 128588 129268 R hypothetical protein complement(128588..129268) Nocardioides sp. JS614 4595401 YP_919252.1 CDS Noca_4805 NC_008697.1 129530 130021 R hypothetical protein complement(129530..130021) Nocardioides sp. JS614 4595407 YP_919253.1 CDS Noca_4806 NC_008697.1 130121 131161 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: bja:blr3678 putative oxidoreductase; oxidoreductase FAD/NAD(P)-binding subunit complement(130121..131161) Nocardioides sp. JS614 4595409 YP_919254.1 CDS Noca_4807 NC_008697.1 131250 132755 R PFAM: methane/phenol/toluene hydroxylase; KEGG: fra:Francci3_2520 methane monooxygenase; methane monooxygenase complement(131250..132755) Nocardioides sp. JS614 4595413 YP_919255.1 CDS Noca_4808 NC_008697.1 132773 133090 R PFAM: monooxygenase component MmoB/DmpM; monooxygenase component MmoB/DmpM complement(132773..133090) Nocardioides sp. JS614 4595406 YP_919256.1 CDS Noca_4809 NC_008697.1 133105 134154 R PFAM: methane/phenol/toluene hydroxylase; KEGG: fra:Francci3_2518 methane/phenol/toluene hydroxylase; methane monooxygenase complement(133105..134154) Nocardioides sp. JS614 4595410 YP_919257.1 CDS Noca_4810 NC_008697.1 134268 135380 R PFAM: Methionine synthase, vitamin-B12 independent; KEGG: sso:SSO0407 5-methyltetrahydropteroyltriglutamate- homocysteine methyltransferase; methionine synthase (B12-independent) complement(134268..135380) Nocardioides sp. JS614 4595408 YP_919258.1 CDS Noca_4811 NC_008697.1 135529 137610 R PFAM: CoA-binding domain protein; KEGG: rxy:Rxyl_2544 CoA-binding protein; CoA-binding domain-containing protein complement(135529..137610) Nocardioides sp. JS614 4595419 YP_919259.1 CDS Noca_4812 NC_008697.1 137598 138425 R KEGG: rxy:Rxyl_1583 glutaconate CoA-transferase; glutaconate CoA-transferase complement(137598..138425) Nocardioides sp. JS614 4595414 YP_919260.1 CDS Noca_4813 NC_008697.1 138422 139339 R PFAM: coenzyme A transferase; KEGG: bxe:Bxe_A2751 putative acyl CoA-transferase subunit A; coenzyme A transferase complement(138422..139339) Nocardioides sp. JS614 4595416 YP_919261.1 CDS Noca_4814 NC_008697.1 139351 140124 R PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bbr:BB1748 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR complement(139351..140124) Nocardioides sp. JS614 4595411 YP_919262.1 CDS Noca_4815 NC_008697.1 140263 141588 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: ttj:TTHA1835 NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase complement(140263..141588) Nocardioides sp. JS614 4595412 YP_919263.1 CDS Noca_4816 NC_008697.1 141795 142580 D PFAM: (2R)-phospho-3-sulfolactate synthase, ComA; KEGG: sru:SRU_0020 phosphosulfolactate synthase; phosphosulfolactate synthase 141795..142580 Nocardioides sp. JS614 4595420 YP_919264.1 CDS Noca_4817 NC_008697.1 142577 143506 D KEGG: mac:MA3750 hypothetical protein; hypothetical protein 142577..143506 Nocardioides sp. JS614 4595418 YP_919265.1 CDS Noca_4818 NC_008697.1 143503 144858 D PFAM: fumarate lyase; KEGG: pae:PA3517 probable lyase; fumarate lyase 143503..144858 Nocardioides sp. JS614 4595417 YP_919266.1 CDS Noca_4819 NC_008697.1 144855 145823 D PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: pab:PAB2303 1-aminocyclopropane-1-carboxylate deaminase; D-cysteine desulfhydrase 144855..145823 Nocardioides sp. JS614 4595415 YP_919267.1 CDS Noca_4820 NC_008697.1 145820 147322 D PFAM: fumarate lyase; KEGG: reu:Reut_B3820 argininosuccinate lyase; argininosuccinate lyase 145820..147322 Nocardioides sp. JS614 4595421 YP_919268.1 CDS Noca_4821 NC_008697.1 147308 147997 R PFAM: phosphoadenosine phosphosulfate reductase; KEGG: sma:SAV2129 putative phosphoadenosine phosphosulfate reductase; phosphoadenylylsulfate reductase (thioredoxin) complement(147308..147997) Nocardioides sp. JS614 4595423 YP_919269.1 CDS Noca_4822 NC_008697.1 148287 149699 D KEGG: sus:Acid_3101 succinate-semialdehyde dehydrogenase (NAD(P)(+)); succinate-semialdehyde dehydrogenase (NAD(P)(+)) 148287..149699 Nocardioides sp. JS614 4595427 YP_919270.1 CDS Noca_4823 NC_008697.1 149733 151424 R KEGG: sma:SAV7236 hypothetical protein; CdaR family transcriptional regulator complement(149733..151424) Nocardioides sp. JS614 4595404 YP_919271.1 CDS Noca_4824 NC_008697.1 151429 152046 R KEGG: aba:Acid345_0842 hypothetical protein; hypothetical protein complement(151429..152046) Nocardioides sp. JS614 4595424 YP_919272.1 CDS Noca_4825 NC_008697.1 152576 153055 R KEGG: nfa:pnf2590 putative alkylmercury lyase; hypothetical protein complement(152576..153055) Nocardioides sp. JS614 4595422 YP_919273.1 CDS Noca_4826 NC_008697.1 154835 155569 R PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: mba:Mbar_A0777 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase; short-chain dehydrogenase/reductase SDR complement(154835..155569) Nocardioides sp. JS614 4595433 YP_919274.1 CDS Noca_4827 NC_008697.1 155578 157197 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: tte:TTE1674 dihydrolipoamide dehydrogenase/glutathione oxidoreductase and related enzymes; FAD-dependent pyridine nucleotide-disulphide oxidoreductase complement(155578..157197) Nocardioides sp. JS614 4595428 YP_919275.1 CDS Noca_4828 NC_008697.1 157362 157979 D KEGG: aba:Acid345_0842 hypothetical protein; hypothetical protein 157362..157979 Nocardioides sp. JS614 4595430 YP_919276.1 CDS Noca_4829 NC_008697.1 157986 158846 D KEGG: sma:SAV7236 hypothetical protein; hypothetical protein 157986..158846 Nocardioides sp. JS614 4595425 YP_919277.1 CDS Noca_4830 NC_008697.1 158824 159723 R PFAM: Integrase, catalytic region; KEGG: mmc:Mmcs_3191 integrase, catalytic region; integrase catalytic subunit complement(158824..159723) Nocardioides sp. JS614 4595426 YP_919278.1 CDS Noca_4831 NC_008697.1 160134 161051 D KEGG: sma:SAV7236 hypothetical protein; CdaR family transcriptional regulator 160134..161051 Nocardioides sp. JS614 4595434 YP_919279.1 CDS Noca_4832 NC_008697.1 161068 162003 R PFAM: luciferase family protein; KEGG: nfa:nfa26250 hypothetical protein; luciferase family protein complement(161068..162003) Nocardioides sp. JS614 4595432 YP_919280.1 CDS Noca_4833 NC_008697.1 162045 163511 R KEGG: sus:Acid_3101 succinate-semialdehyde dehydrogenase (NAD(P)(+)); succinate-semialdehyde dehydrogenase (NAD(P)(+)) complement(162045..163511) Nocardioides sp. JS614 4595431 YP_919281.1 CDS Noca_4834 NC_008697.1 163615 164316 D PFAM: phosphoadenosine phosphosulfate reductase; KEGG: sma:SAV2129 putative phosphoadenosine phosphosulfate reductase; phosphoadenylylsulfate reductase (thioredoxin) 163615..164316 Nocardioides sp. JS614 4595429 YP_919282.1 CDS Noca_4835 NC_008697.1 164313 165815 R PFAM: fumarate lyase; KEGG: reu:Reut_B3820 argininosuccinate lyase; argininosuccinate lyase complement(164313..165815) Nocardioides sp. JS614 4595436 YP_919283.1 CDS Noca_4836 NC_008697.1 165812 166780 R PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: pab:PAB2303 1-aminocyclopropane-1-carboxylate deaminase; D-cysteine desulfhydrase complement(165812..166780) Nocardioides sp. JS614 4595438 YP_919284.1 CDS Noca_4837 NC_008697.1 166780 168132 R PFAM: fumarate lyase; KEGG: pau:PA14_18830 putative lyase; fumarate lyase complement(166780..168132) Nocardioides sp. JS614 4595442 YP_919285.1 CDS Noca_4838 NC_008697.1 168129 169058 R KEGG: mhu:Mhun_1798 hypothetical protein; hypothetical protein complement(168129..169058) Nocardioides sp. JS614 4595435 YP_919286.1 CDS Noca_4839 NC_008697.1 169055 169840 R PFAM: (2R)-phospho-3-sulfolactate synthase, ComA; KEGG: sru:SRU_0020 phosphosulfolactate synthase; phosphosulfolactate synthase complement(169055..169840) Nocardioides sp. JS614 4595439 YP_919287.1 CDS Noca_4840 NC_008697.1 170006 171376 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; KEGG: ttj:TTHA1835 NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase 170006..171376 Nocardioides sp. JS614 4595437 YP_919288.1 CDS Noca_4841 NC_008697.1 171403 172179 D PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: tfu:Tfu_1466 short-chain alcohol dehydrogenase; short-chain dehydrogenase/reductase SDR 171403..172179 Nocardioides sp. JS614 4595448 YP_919289.1 CDS Noca_4842 NC_008697.1 172190 173107 D PFAM: coenzyme A transferase; KEGG: nph:NP6034A 3-oxoacid CoA-transferase , alpha subunit; coenzyme A transferase 172190..173107 Nocardioides sp. JS614 4595443 YP_919290.1 CDS Noca_4843 NC_008697.1 173104 173964 D KEGG: rxy:Rxyl_1583 glutaconate CoA-transferase; glutaconate CoA-transferase 173104..173964 Nocardioides sp. JS614 4595445 YP_919291.1 CDS Noca_4844 NC_008697.1 173952 176033 D PFAM: CoA-binding domain protein; KEGG: rxy:Rxyl_2544 CoA-binding protein; CoA-binding domain-containing protein 173952..176033 Nocardioides sp. JS614 4595440 YP_919292.1 CDS Noca_4846 NC_008697.1 177350 178033 D hypothetical protein 177350..178033 Nocardioides sp. JS614 4595447 YP_919293.1 CDS Noca_4847 NC_008697.1 179204 179461 D hypothetical protein 179204..179461 Nocardioides sp. JS614 4595446 YP_919294.1 CDS Noca_4848 NC_008697.1 180258 181130 R PFAM: Patatin; KEGG: rha:RHA1_ro01898 possible lipid acyl hydrolase; patatin complement(180258..181130) Nocardioides sp. JS614 4595444 YP_919295.1 CDS Noca_4849 NC_008697.1 181192 182397 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sco:SCO7117 ferredoxin reductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase complement(181192..182397) Nocardioides sp. JS614 4595211 YP_919296.1 CDS Noca_4850 NC_008697.1 182394 183050 R PFAM: GTP cyclohydrolase I; KEGG: nfa:nfa31470 putative GTP cyclohydrolase I; GTP cyclohydrolase complement(182394..183050) Nocardioides sp. JS614 4595234 YP_919297.1 CDS Noca_4851 NC_008697.1 183047 183538 R KEGG: rha:RHA1_ro04235 possible membrane protein; hypothetical protein complement(183047..183538) Nocardioides sp. JS614 4595235 YP_919298.1 CDS Noca_4852 NC_008697.1 183564 184280 D KEGG: mbo:Mb2651 hypothetical protein; hypothetical protein 183564..184280 Nocardioides sp. JS614 4595449 YP_919299.1 CDS Noca_4853 NC_008697.1 184744 185397 R KEGG: ade:Adeh_3852 sigma-24 (FecI-like); sigma-24 (FecI-like) complement(184744..185397) Nocardioides sp. JS614 4595358 YP_919300.1 CDS Noca_4854 NC_008697.1 185716 186129 D hypothetical protein 185716..186129 Nocardioides sp. JS614 4595366 YP_919301.1 CDS Noca_4855 NC_008697.1 186129 186830 D KEGG: bcz:BCZK2544 hypothetical protein; hypothetical protein 186129..186830 Nocardioides sp. JS614 4595365 YP_919302.1 CDS Noca_4856 NC_008697.1 186970 187302 R PFAM: Cupin 2, conserved barrel domain protein; KEGG: mpa:MAP2723c hypothetical protein; cupin 2 domain-containing protein complement(186970..187302) Nocardioides sp. JS614 4595230 YP_919303.1 CDS Noca_4857 NC_008697.1 187323 187748 R KEGG: rha:RHA1_ro08094 hypothetical protein; hypothetical protein complement(187323..187748) Nocardioides sp. JS614 4595236 YP_919304.1 CDS Noca_4858 NC_008697.1 187761 190481 R paralogs to the E1 component of pyruvate dehydrogenase subunit E1; 2-oxoacid dehydrogenase subunit E1 complement(187761..190481) Nocardioides sp. JS614 4595239 YP_919305.1 CDS Noca_4860 NC_008697.1 191272 191919 R KEGG: mpa:MAP2725c hypothetical protein; transcriptional regulator complement(191272..191919) Nocardioides sp. JS614 4595238 YP_919306.1 CDS Noca_4861 NC_008697.1 191912 192265 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mpa:MAP2726c FdxA; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein complement(191912..192265) Nocardioides sp. JS614 4595237 YP_919307.1 CDS Noca_4862 NC_008697.1 192317 192931 D KEGG: sco:SCO7426 hypothetical protein; hypothetical protein 192317..192931 Nocardioides sp. JS614 4595240 YP_919308.1 CDS Noca_4863 NC_008697.1 192928 194148 R TIGRFAM: ornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: mmc:Mmcs_0992 ornithine aminotransferase; aminotransferase complement(192928..194148) Nocardioides sp. JS614 4595244 YP_919309.1 CDS Noca_4864 NC_008697.1 194190 194585 R TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: rha:RHA1_ro08265 possible carboxymuconolactone decarboxylase; alkylhydroperoxidase complement(194190..194585) Nocardioides sp. JS614 4595233 YP_919310.1 CDS Noca_4865 NC_008697.1 194649 196352 R PFAM: cytochrome c oxidase, subunit I; KEGG: sma:SAV6048 putative cytochrome c oxidase subunit I; cytochrome-c oxidase complement(194649..196352) Nocardioides sp. JS614 4595243 YP_919311.1 CDS Noca_4866 NC_008697.1 196710 198110 R KEGG: sco:SCO3606 regulator; CdaR family transcriptional regulator complement(196710..198110) Nocardioides sp. JS614 4595242 YP_919312.1 CDS Noca_4867 NC_008697.1 198111 199028 R PFAM: band 7 protein; KEGG: mmc:Mmcs_1484 band 7 protein; SPFH domain-containing protein/band 7 family protein complement(198111..199028) Nocardioides sp. JS614 4595241 YP_919313.1 CDS Noca_4868 NC_008697.1 199253 199615 R PFAM: protein of unknown function DUF488; KEGG: sco:SCO7620 hypothetical protein; hypothetical protein complement(199253..199615) Nocardioides sp. JS614 4595231 YP_919314.1 CDS Noca_4869 NC_008697.1 200423 201763 D catalyzes the reversible formation of D-erythrose 4-phosphate and D-fructose 6-phosphate from sedoheptulose 7-phosphate and D-glyceraldehyde 3-phosphate; transaldolase 200423..201763 Nocardioides sp. JS614 4595232 YP_919315.1 CDS Noca_4870 NC_008697.1 202379 203209 D PFAM: UspA domain protein; KEGG: fra:Francci3_2760 UspA; UspA domain-containing protein 202379..203209 Nocardioides sp. JS614 4595245 YP_919316.1 CDS Noca_4871 NC_008697.1 203382 203810 D KEGG: rha:RHA1_ro04235 possible membrane protein; hypothetical protein 203382..203810 Nocardioides sp. JS614 4595257 YP_919317.1 CDS Noca_4872 NC_008697.1 204173 205219 R PFAM: glyceraldehyde 3-phosphate dehydrogenase; KEGG: sma:SAV6296 putative glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) complement(204173..205219) Nocardioides sp. JS614 4595246 YP_919318.1 CDS Noca_4873 NC_008697.1 205891 206367 D KEGG: ade:Adeh_3192 hypothetical protein; hypothetical protein 205891..206367 Nocardioides sp. JS614 4595249 YP_919319.1 CDS Noca_4874 NC_008697.1 206357 208153 D PFAM: glycoside hydrolase 15-related; KEGG: sco:SCO6944 hypothetical protein; glycoside hydrolase 15-related 206357..208153 Nocardioides sp. JS614 4595250 YP_919320.1 CDS Noca_4875 NC_008697.1 208423 208806 D KEGG: sco:SCO6164 putative DnaK suppressor protein; hypothetical protein 208423..208806 Nocardioides sp. JS614 4595247 YP_919321.1 CDS Noca_4876 NC_008697.1 209199 210206 R KEGG: cch:Cag_0577 hypothetical protein; hypothetical protein complement(209199..210206) Nocardioides sp. JS614 4595261 YP_919322.1 CDS Noca_4877 NC_008697.1 210203 210739 R hypothetical protein complement(210203..210739) Nocardioides sp. JS614 4595255 YP_919323.1 CDS Noca_4878 NC_008697.1 210959 211270 R KEGG: mmc:Mmcs_4843 hypothetical protein; hypothetical protein complement(210959..211270) Nocardioides sp. JS614 4595251 YP_919324.1 CDS Noca_4879 NC_008697.1 211331 212077 D PFAM: phage Gp37Gp68 family protein; KEGG: mbo:Mb2753 hypothetical protein; phage Gp37Gp68 family protein 211331..212077 Nocardioides sp. JS614 4595256 YP_919325.1 CDS Noca_4880 NC_008697.1 212067 213299 R hypothetical protein complement(212067..213299) Nocardioides sp. JS614 4595254 YP_919326.1 CDS Noca_4881 NC_008697.1 213460 213969 D hypothetical protein 213460..213969 Nocardioides sp. JS614 4595264 YP_919327.1 CDS Noca_4882 NC_008697.1 213973 214677 R KEGG: mmc:Mmcs_0815 hypothetical protein; hypothetical protein complement(213973..214677) Nocardioides sp. JS614 4595265 YP_919328.1 CDS Noca_4883 NC_008697.1 214667 215497 R KEGG: mmc:Mmcs_0814 hypothetical protein; hypothetical protein complement(214667..215497) Nocardioides sp. JS614 4595258 YP_919329.1 CDS Noca_4884 NC_008697.1 215626 216111 D KEGG: nfa:pnf1910 hypothetical protein; hypothetical protein 215626..216111 Nocardioides sp. JS614 4595253 YP_919330.1 CDS Noca_4885 NC_008697.1 216108 217961 D KEGG: nfa:pnf1900 hypothetical protein; hypothetical protein 216108..217961 Nocardioides sp. JS614 4595252 YP_919331.1 CDS Noca_4886 NC_008697.1 217946 220069 D PFAM: phage integrase family protein; KEGG: nfa:pnf1890 hypothetical protein; phage integrase family protein 217946..220069 Nocardioides sp. JS614 4595269 YP_919332.1 CDS Noca_4887 NC_008697.1 220066 220512 D KEGG: rha:RHA1_ro03205 hypothetical protein; hypothetical protein 220066..220512 Nocardioides sp. JS614 4595270 YP_919333.1 CDS Noca_4888 NC_008697.1 220667 221230 R PFAM: bifunctional deaminase-reductase domain protein; KEGG: rha:RHA1_ro03562 hypothetical protein; deaminase-reductase domain-containing protein complement(220667..221230) Nocardioides sp. JS614 4595259 YP_919334.1 CDS Noca_4889 NC_008697.1 221746 222111 R KEGG: cch:Cag_1216 hypothetical protein; hypothetical protein complement(221746..222111) Nocardioides sp. JS614 4595262 YP_919335.1 CDS Noca_4890 NC_008697.1 222113 222775 R hypothetical protein complement(222113..222775) Nocardioides sp. JS614 4595260 YP_919336.1 CDS Noca_4891 NC_008697.1 222781 223032 R KEGG: ret:RHE_CH02031 putative gualylate cyclase protein; putative gualylate cyclase protein complement(222781..223032) Nocardioides sp. JS614 4595271 YP_919337.1 CDS Noca_4892 NC_008697.1 223083 224876 D PFAM: transcriptional activator domain; Tetratricopeptide TPR_4; KEGG: mlo:mlr2433 probable regulatory protein; transcriptional activator domain-containing protein 223083..224876 Nocardioides sp. JS614 4595273 YP_919338.1 CDS Noca_4893 NC_008697.1 225245 226069 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: hch:HCH_03658 SAM-dependent methyltransferase; methyltransferase type 11 225245..226069 Nocardioides sp. JS614 4595263 YP_919339.1 CDS Noca_4894 NC_008697.1 226495 227193 R hypothetical protein complement(226495..227193) Nocardioides sp. JS614 4595266 YP_919340.1 CDS Noca_4895 NC_008697.1 227340 228476 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: fal:FRAAL2981 putative two-component sensor; histidine kinase, dimerisation and phosphoacceptor region 227340..228476 Nocardioides sp. JS614 4595274 YP_919341.1 CDS Noca_4896 NC_008697.1 228473 229120 D PFAM: regulatory protein, LuxR; response regulator receiver; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sco:SCO3640 putative two-component system regulator; response regulator receiver 228473..229120 Nocardioides sp. JS614 4595275 YP_919342.1 CDS Noca_4897 NC_008697.1 229599 230243 R PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: rha:RHA1_ro04202 response regulator, two-component system; response regulator receiver complement(229599..230243) Nocardioides sp. JS614 4595278 YP_919343.1 CDS Noca_4898 NC_008697.1 230236 231711 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: rha:RHA1_ro04201 sensor kinase, two-component system; ATPase domain-containing protein complement(230236..231711) Nocardioides sp. JS614 4595268 YP_919344.1 CDS Noca_4899 NC_008697.1 231716 232393 R hypothetical protein complement(231716..232393) Nocardioides sp. JS614 4595267 YP_919345.1 CDS Noca_4900 NC_008697.1 232691 233158 R hypothetical protein complement(232691..233158) Nocardioides sp. JS614 4595279 YP_919346.1 CDS Noca_4901 NC_008697.1 233319 234470 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: sma:SAV4680 two-component system sensor kinase; histidine kinase, dimerisation and phosphoacceptor region 233319..234470 Nocardioides sp. JS614 4595276 YP_919347.1 CDS Noca_4902 NC_008697.1 234467 235117 D PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: sco:SCO3640 putative two-component system regulator; response regulator receiver 234467..235117 Nocardioides sp. JS614 4595280 YP_919348.1 CDS Noca_4903 NC_008697.1 235386 236429 R hypothetical protein complement(235386..236429) Nocardioides sp. JS614 4595283 YP_919349.1 CDS Noca_4904 NC_008697.1 236810 237466 R hypothetical protein complement(236810..237466) Nocardioides sp. JS614 4595248 YP_919350.1 CDS Noca_4905 NC_008697.1 237578 239068 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: rha:RHA1_ro04201 sensor kinase, two-component system; ATPase domain-containing protein 237578..239068 Nocardioides sp. JS614 4595282 YP_919351.1 CDS Noca_4906 NC_008697.1 239065 239682 D PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: rha:RHA1_ro04202 response regulator, two-component system; response regulator receiver 239065..239682 Nocardioides sp. JS614 4595281 YP_919352.1 CDS Noca_4909 NC_008697.1 241009 241611 D PFAM: protein of unknown function DUF1326; KEGG: mlo:mll4476 hypothetical protein; hypothetical protein 241009..241611 Nocardioides sp. JS614 4595287 YP_919353.1 CDS Noca_4910 NC_008697.1 241616 242431 D KEGG: bca:BCE_A0200 hypothetical protein; hypothetical protein 241616..242431 Nocardioides sp. JS614 4595277 YP_919354.1 CDS Noca_4911 NC_008697.1 242711 244108 R PFAM: FAD linked oxidase domain protein; Berberine/berberine domain protein; KEGG: pol:Bpro_1506 FAD linked oxidase-like; FAD linked oxidase domain-containing protein complement(242711..244108) Nocardioides sp. JS614 4595286 YP_919355.1 CDS Noca_4912 NC_008697.1 244241 244942 D PFAM: helix-turn-helix, HxlR type; KEGG: mbo:Mb1754c hypothetical protein; helix-turn-helix, HxlR type 244241..244942 Nocardioides sp. JS614 4595285 YP_919356.1 CDS Noca_4913 NC_008697.1 245204 246907 D PFAM: regulatory protein, LuxR; KEGG: mmc:Mmcs_0427 transcriptional regulator, LuxR family; regulatory protein, LuxR 245204..246907 Nocardioides sp. JS614 4595284 YP_919357.1 CDS Noca_4914 NC_008697.1 246984 247397 D PFAM: protein of unknown function DUF1486; KEGG: sma:SAV3997 hypothetical protein; hypothetical protein 246984..247397 Nocardioides sp. JS614 4595290 YP_919358.1 CDS Noca_4915 NC_008697.1 247405 247689 D hypothetical protein 247405..247689 Nocardioides sp. JS614 4595291 YP_919359.1 CDS Noca_4916 NC_008697.1 247862 248695 D PFAM: alpha/beta hydrolase fold; KEGG: pau:PA14_28630 putative hydrolase; alpha/beta hydrolase fold 247862..248695 Nocardioides sp. JS614 4595288 YP_919360.1 CDS Noca_4917 NC_008697.1 248692 249510 D KEGG: neu:NE2346 possible hydrolase; putative hydrolase 248692..249510 Nocardioides sp. JS614 4595300 YP_919361.1 CDS Noca_4918 NC_008697.1 249532 251082 R PFAM: regulatory protein, LuxR; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: mpa:MAP3352c hypothetical protein; metal-dependent phosphohydrolase complement(249532..251082) Nocardioides sp. JS614 4595289 YP_919362.1 CDS Noca_4919 NC_008697.1 251145 252002 R PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: bja:bll8020 putative ubiquinone/menaquinone biosynthesis methyltransferase; methyltransferase type 11 complement(251145..252002) Nocardioides sp. JS614 4595295 YP_919363.1 CDS Noca_4920 NC_008697.1 252051 253688 D PFAM: regulatory protein, LuxR; Tetratricopeptide TPR_4; KEGG: mmc:Mmcs_0427 transcriptional regulator, LuxR family; LuxR family transcriptional regulator 252051..253688 Nocardioides sp. JS614 4595296 YP_919364.1 CDS Noca_4921 NC_008697.1 254243 254560 D hypothetical protein 254243..254560 Nocardioides sp. JS614 4595292 YP_919365.1 CDS Noca_4922 NC_008697.1 254736 255527 D KEGG: fra:Francci3_1530 conserved hypothetical protein; hypothetical protein 254736..255527 Nocardioides sp. JS614 4595305 YP_919366.1 CDS Noca_4923 NC_008697.1 255940 256533 D hypothetical protein 255940..256533 Nocardioides sp. JS614 4595294 YP_919367.1 CDS Noca_4924 NC_008697.1 256626 256913 R hypothetical protein complement(256626..256913) Nocardioides sp. JS614 4595297 YP_919368.1 CDS Noca_4925 NC_008697.1 256921 257334 R PFAM: protein of unknown function DUF1486; KEGG: sma:SAV3997 hypothetical protein; hypothetical protein complement(256921..257334) Nocardioides sp. JS614 4595299 YP_919369.1 CDS Noca_4926 NC_008697.1 257412 259136 R PFAM: regulatory protein, LuxR; KEGG: mmc:Mmcs_0427 transcriptional regulator, LuxR family; regulatory protein, LuxR complement(257412..259136) Nocardioides sp. JS614 4595293 YP_919370.1 CDS Noca_4927 NC_008697.1 259580 260005 R hypothetical protein complement(259580..260005) Nocardioides sp. JS614 4595308 YP_919371.1 CDS Noca_4928 NC_008697.1 260016 263243 R PFAM: transcriptional activator domain; Tetratricopeptide TPR_4; KEGG: ade:Adeh_3289 transcriptional regulator, SARP family; transcriptional activator domain-containing protein complement(260016..263243) Nocardioides sp. JS614 4595309 YP_919372.1 CDS Noca_4929 NC_008697.1 263356 264168 D PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bja:bll4353 2-deoxy-D-gluconate 3-dehydrogenase; short-chain dehydrogenase/reductase SDR 263356..264168 Nocardioides sp. JS614 4595301 YP_919373.1 CDS Noca_4930 NC_008697.1 264231 264887 D PFAM: protein of unknown function DUF1326; KEGG: bpm:BURPS1710b_1552 hypothetical protein; hypothetical protein 264231..264887 Nocardioides sp. JS614 4595304 YP_919374.1 CDS Noca_4931 NC_008697.1 264884 265669 D KEGG: rxy:Rxyl_0427 hypothetical protein; hypothetical protein 264884..265669 Nocardioides sp. JS614 4595298 YP_919375.1 CDS Noca_4932 NC_008697.1 265753 266301 D PFAM: bifunctional deaminase-reductase domain protein; KEGG: rha:RHA1_ro03562 hypothetical protein; deaminase-reductase domain-containing protein 265753..266301 Nocardioides sp. JS614 4595313 YP_919376.1 CDS Noca_4933 NC_008697.1 266598 266846 R hypothetical protein complement(266598..266846) Nocardioides sp. JS614 4595314 YP_919377.1 CDS Noca_4934 NC_008697.1 266843 267616 R hypothetical protein complement(266843..267616) Nocardioides sp. JS614 4595302 YP_919378.1 CDS Noca_4935 NC_008697.1 267996 268388 R hypothetical protein complement(267996..268388) Nocardioides sp. JS614 4595306 YP_919379.1 CDS Noca_4936 NC_008697.1 268640 274582 D PFAM: TOPRIM domain protein; DNA primase catalytic core, N-terminal domain; SMART: Toprim sub domain protein; KEGG: mmc:Mmcs_1430 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member-like protein; DNA primase catalytic core 268640..274582 Nocardioides sp. JS614 4595303 YP_919380.1 CDS Noca_4938 NC_008697.1 275322 275990 R PFAM: regulatory protein, TetR; Tetracyclin repressor domain protein; KEGG: rha:RHA1_ro02950 probable transcriptional regulator, TetR family; regulatory protein, TetR complement(275322..275990) Nocardioides sp. JS614 4595317 YP_919381.1 CDS Noca_4939 NC_008697.1 276055 277059 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cyb:CYB_1206 drug exporter-1 ABC transporter (DrugE1) family, ATP-binding protein; ABC transporter related 276055..277059 Nocardioides sp. JS614 4595307 YP_919382.1 CDS Noca_4940 NC_008697.1 277056 277883 D PFAM: ABC-2 type transporter; KEGG: ape:APE2512 putative ABC-2 type transport system permease protein; ABC-2 type transporter 277056..277883 Nocardioides sp. JS614 4595310 YP_919383.1 CDS Noca_4941 NC_008697.1 277880 278749 D KEGG: cya:CYA_1761 putative ABC-2 type transporter, permease protein; putative ABC-2 type transporter, permease protein 277880..278749 Nocardioides sp. JS614 4595318 YP_919384.1 CDS Noca_4942 NC_008697.1 278818 279516 R PFAM: alkylmercury lyase; KEGG: mmr:Mmar10_2330 alkylmercury lyase; alkylmercury lyase complement(278818..279516) Nocardioides sp. JS614 4595319 YP_919385.1 CDS Noca_4943 NC_008697.1 279513 279824 R hypothetical protein complement(279513..279824) Nocardioides sp. JS614 4595322 YP_919386.1 CDS Noca_4944 NC_008697.1 279821 280396 R hypothetical protein complement(279821..280396) Nocardioides sp. JS614 4595312 YP_919387.1 CDS Noca_4945 NC_008697.1 280467 280910 R PFAM: regulatory protein, MerR; KEGG: bam:Bamb_1782 transcriptional regulator, MerR family; regulatory protein, MerR complement(280467..280910) Nocardioides sp. JS614 4595311 YP_919388.1 CDS Noca_4946 NC_008697.1 281230 282660 R TIGRFAM: mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: cjk:jk1442 putative mercuric reductase; mercuric reductase complement(281230..282660) Nocardioides sp. JS614 4595323 YP_919389.1 CDS Noca_4947 NC_008697.1 282758 283147 D PFAM: regulatory protein, MerR; KEGG: cjk:jk1441 putative transcriptional regulator (MerR family); regulatory protein, MerR 282758..283147 Nocardioides sp. JS614 4595320 YP_919390.1 CDS Noca_4948 NC_008697.1 283347 284357 D PFAM: Bile acid:sodium symporter; KEGG: fal:FRAAL5305 putative arsenite efflux pump or related permease; bile acid:sodium symporter 283347..284357 Nocardioides sp. JS614 4595324 YP_919391.1 CDS Noca_4949 NC_008697.1 284451 284804 D KEGG: nfa:nfa28290 hypothetical protein; hypothetical protein 284451..284804 Nocardioides sp. JS614 4595327 YP_919392.1 CDS Noca_4950 NC_008697.1 284801 285241 D PFAM: regulatory protein, MerR; KEGG: nfa:pnf2580 putative transcriptional regulator; regulatory protein, MerR 284801..285241 Nocardioides sp. JS614 4595316 YP_919393.1 CDS Noca_4951 NC_008697.1 285512 286138 D PFAM: Redoxin domain protein; Thioredoxin domain; KEGG: mbo:Mb1704 probable conserved lipoprotein DsbF; redoxin domain-containing protein 285512..286138 Nocardioides sp. JS614 4595326 YP_919394.1 CDS Noca_4952 NC_008697.1 286148 287041 D PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: mbo:Mb2902c probable conserved integral membrane protein; cytochrome c biogenesis protein, transmembrane region 286148..287041 Nocardioides sp. JS614 4595325 YP_919395.1 CDS Noca_4953 NC_008697.1 287366 287704 D KEGG: nfa:nfa28290 hypothetical protein; hypothetical protein 287366..287704 Nocardioides sp. JS614 4595328 YP_919396.1 CDS Noca_4954 NC_008697.1 287701 288132 D PFAM: regulatory protein, MerR; KEGG: nfa:pnf2580 putative transcriptional regulator; regulatory protein, MerR 287701..288132 Nocardioides sp. JS614 4595332 YP_919397.1 CDS Noca_4955 NC_008697.1 288129 288407 D hypothetical protein 288129..288407 Nocardioides sp. JS614 4595321 YP_919398.1 CDS Noca_4956 NC_008697.1 288407 288919 D hypothetical protein 288407..288919 Nocardioides sp. JS614 4595331 YP_919399.1 CDS Noca_4957 NC_008697.1 288932 289267 D PFAM: protein of unknown function UPF0060; KEGG: mbo:Mb2672c hypothetical protein; hypothetical protein 288932..289267 Nocardioides sp. JS614 4595330 YP_919400.1 CDS Noca_4958 NC_008697.1 289468 290097 D PFAM: protein of unknown function UPF0157; KEGG: mmc:Mmcs_3004 dephospho-CoA kinase; hypothetical protein 289468..290097 Nocardioides sp. JS614 4595329 YP_919401.1 CDS Noca_4959 NC_008697.1 290211 290876 R hypothetical protein complement(290211..290876) Nocardioides sp. JS614 4595335 YP_919402.1 CDS Noca_4960 NC_008697.1 290860 291423 R KEGG: rfr:Rfer_3556 hypothetical protein; hypothetical protein complement(290860..291423) Nocardioides sp. JS614 4595336 YP_919403.1 CDS Noca_4961 NC_008697.1 291434 292528 R hypothetical protein complement(291434..292528) Nocardioides sp. JS614 4595333 YP_919404.1 CDS Noca_4962 NC_008697.1 292952 296008 R PFAM: transcriptional regulator domain protein; transcriptional activator domain; Tetratricopeptide TPR_4; KEGG: nfa:nfa34460 putative transcriptional regulator; transcriptional activator domain-containing protein complement(292952..296008) Nocardioides sp. JS614 4595344 YP_919405.1 CDS Noca_4963 NC_008697.1 296114 296440 D hypothetical protein 296114..296440 Nocardioides sp. JS614 4595334 YP_919406.1 CDS Noca_4964 NC_008697.1 296469 297053 D hypothetical protein 296469..297053 Nocardioides sp. JS614 4595340 YP_919407.1 CDS Noca_4965 NC_008697.1 297101 297793 D KEGG: chu:CHU_0224 hypothetical protein; hypothetical protein 297101..297793 Nocardioides sp. JS614 4595341 YP_919408.1 CDS Noca_4966 NC_008697.1 297970 300246 D PFAM: MMPL domain protein; KEGG: sco:SCO6091 integral membrane protein; MMPL domain-containing protein 297970..300246 Nocardioides sp. JS614 4595337 YP_919409.1 CDS Noca_4967 NC_008697.1 300847 301539 D hypothetical protein 300847..301539 Nocardioides sp. JS614 4595345 YP_919410.1 CDS Noca_4968 NC_008697.1 301532 302650 D PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: sco:SCO3537 DNA-binding protein; helix-turn-helix domain-containing protein 301532..302650 Nocardioides sp. JS614 4595339 YP_919411.1 CDS Noca_4969 NC_008697.1 302654 302875 D KEGG: gsu:GSU0763 helicase, putative; helicase, putative 302654..302875 Nocardioides sp. JS614 4595342 YP_919412.1 CDS Noca_4970 NC_008697.1 303064 305532 D KEGG: chu:CHU_0041 hypothetical protein; hypothetical protein 303064..305532 Nocardioides sp. JS614 4595343 YP_919413.1 CDS Noca_4971 NC_008697.1 305533 305964 R hypothetical protein complement(305533..305964) Nocardioides sp. JS614 4595338 YP_921238.1 CDS Noca_0001 NC_008699.1 72 1658 D KEGG: fra:Francci3_0001 chromosomal replication initiator protein DnaA; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator, DnaA C-terminal domain; Chromosomal replication initiator, DnaA; SMART: AAA ATPase; chromosomal replication initiator protein DnaA 72..1658 Nocardioides sp. JS614 4598158 YP_921239.1 CDS Noca_0002 NC_008699.1 2029 3255 D binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 2029..3255 Nocardioides sp. JS614 4598432 YP_921240.1 CDS Noca_0003 NC_008699.1 3332 4237 D similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate; 6-phosphogluconate dehydrogenase 3332..4237 Nocardioides sp. JS614 4598433 YP_921241.1 CDS recF NC_008699.1 4254 5516 D Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 4254..5516 Nocardioides sp. JS614 4598355 YP_921242.1 CDS Noca_0005 NC_008699.1 5506 6072 D PFAM: protein of unknown function DUF721; KEGG: sco:SCO3875 conserved hypothetical protein; hypothetical protein 5506..6072 Nocardioides sp. JS614 4598356 YP_921243.1 CDS gyrB NC_008699.1 6391 8526 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 6391..8526 Nocardioides sp. JS614 4598357 YP_921244.1 CDS Noca_0007 NC_008699.1 8578 11346 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 8578..11346 Nocardioides sp. JS614 4598358 YP_921245.1 CDS Noca_0008 NC_008699.1 11346 11864 D KEGG: sma:SAV4323 hypothetical protein; hypothetical protein 11346..11864 Nocardioides sp. JS614 4598359 YP_921246.1 CDS Noca_0009 NC_008699.1 12546 13964 D PFAM: plasmid pRiA4b ORF-3 family protein; KEGG: cef:CE1215 hypothetical protein; plasmid pRiA4b ORF-3 family protein 12546..13964 Nocardioides sp. JS614 4598362 YP_921247.1 CDS Noca_0010 NC_008699.1 13975 14715 R PFAM: fatty acid hydroxylase; KEGG: mmc:Mmcs_2728 fatty acid hydroxylase; fatty acid hydroxylase complement(13975..14715) Nocardioides sp. JS614 4598363 YP_921248.1 CDS Noca_0011 NC_008699.1 14712 15461 R PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: mmc:Mmcs_2727 regulatory protein GntR, HTH; GntR family transcriptional regulator complement(14712..15461) Nocardioides sp. JS614 4598364 YP_921249.1 CDS Noca_0012 NC_008699.1 15502 16314 D KEGG: tfu:Tfu_0164 hypothetical protein; hypothetical protein 15502..16314 Nocardioides sp. JS614 4598365 YP_921250.1 CDS Noca_0013 NC_008699.1 16324 16671 D KEGG: sma:SAV2833 hypothetical protein; hypothetical protein 16324..16671 Nocardioides sp. JS614 4598366 YP_921251.1 CDS Noca_0014 NC_008699.1 16701 17573 D PFAM: Patatin; KEGG: fal:FRAAL0742 hypothetical protein; patatin 16701..17573 Nocardioides sp. JS614 4598367 YP_921252.1 CDS Noca_0015 NC_008699.1 17570 18589 D PFAM: phospholipid/glycerol acyltransferase; KEGG: fal:FRAAL0743 hypothetical protein; putative signal peptide; putative acyltransferase domain; phospholipid/glycerol acyltransferase 17570..18589 Nocardioides sp. JS614 4598368 YP_921253.1 CDS Noca_0016 NC_008699.1 18611 19255 R KEGG: aor:AO090120000081 predicted protein Pfam: IncA TolA PROSITE: ALA_RICH ARG_RICH GLU_RICH GLY_RICH; hypothetical protein complement(18611..19255) Nocardioides sp. JS614 4598369 YP_921254.1 CDS Noca_0017 NC_008699.1 19412 19924 D PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: pac:PPA0718 probable peptidyl-prolyl cis-trans isomerase A; peptidyl-prolyl isomerase 19412..19924 Nocardioides sp. JS614 4598370 YP_921255.1 CDS Noca_0018 NC_008699.1 19941 20861 D PFAM: Rhomboid family protein; KEGG: mmc:Mmcs_5148 rhomboid-like protein; rhomboid family protein 19941..20861 Nocardioides sp. JS614 4598371 YP_921256.1 CDS Noca_0019 NC_008699.1 21062 22003 D KEGG: fra:Francci3_0932 hypothetical protein; hypothetical protein 21062..22003 Nocardioides sp. JS614 4598372 YP_921257.1 CDS Noca_0020 NC_008699.1 22374 22832 R hypothetical protein complement(22374..22832) Nocardioides sp. JS614 4598373 YP_921258.1 CDS Noca_0021 NC_008699.1 22883 23704 D PFAM: protein of unknown function DUF881; KEGG: pac:PPA0183 membrane spanning protein DUF881; hypothetical protein 22883..23704 Nocardioides sp. JS614 4598374 YP_921259.1 CDS Noca_0022 NC_008699.1 23664 25457 R PFAM: protein kinase; PASTA domain containing protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: tfu:Tfu_3066 tyrosine protein kinase:serine/threonine protein kinase:PASTA; protein kinase complement(23664..25457) Nocardioides sp. JS614 4598375 YP_921260.1 CDS Noca_0023 NC_008699.1 25454 26899 R PFAM: protein of unknown function RIO1; protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: tfu:Tfu_3065 tyrosine protein kinase:serine/threonine protein kinase; protein kinase complement(25454..26899) Nocardioides sp. JS614 4598376 YP_921261.1 CDS Noca_0024 NC_008699.1 26896 28368 R PFAM: penicillin-binding protein, transpeptidase; KEGG: fal:FRAAL6753 putative penicillin-binding protein PbpA; peptidoglycan glycosyltransferase complement(26896..28368) Nocardioides sp. JS614 4598377 YP_921262.1 CDS Noca_0025 NC_008699.1 28365 29771 R PFAM: cell cycle protein; KEGG: fal:FRAAL6752 putative cell division protein FtsW; cell cycle protein complement(28365..29771) Nocardioides sp. JS614 4598378 YP_921263.1 CDS Noca_0026 NC_008699.1 29771 31087 R PFAM: protein phosphatase 2C domain protein; KEGG: sco:SCO3845 putative protein phosphatase; protein phosphatase 2C domain-containing protein complement(29771..31087) Nocardioides sp. JS614 4598379 YP_921264.1 CDS Noca_0027 NC_008699.1 31092 31568 R PFAM: Forkhead-associated protein; KEGG: tfu:Tfu_3061 FHA domain protein; forkhead-associated protein complement(31092..31568) Nocardioides sp. JS614 4598380 YP_921265.1 CDS Noca_0028 NC_008699.1 31571 32287 R PFAM: Forkhead-associated protein; KEGG: pac:PPA0189 conserved protein containing FHA domain; forkhead-associated protein complement(31571..32287) Nocardioides sp. JS614 4598381 YP_921266.1 CDS Noca_0029 NC_008699.1 32794 33363 D PFAM: GCN5-related N-acetyltransferase; FR47 domain protein; KEGG: sco:SCO4496 acetyltransferase; N-acetyltransferase GCN5 32794..33363 Nocardioides sp. JS614 4598383 YP_921267.1 CDS Noca_0030 NC_008699.1 33397 34605 R PFAM: major facilitator superfamily MFS_1; KEGG: rxy:Rxyl_2414 major facilitator superfamily MFS_1; major facilitator transporter complement(33397..34605) Nocardioides sp. JS614 4598384 YP_921268.1 CDS Noca_0031 NC_008699.1 34746 35228 D PFAM: MaoC domain protein dehydratase; KEGG: bja:bll6394 putative monoamine oxidase regulatory protein; dehydratase 34746..35228 Nocardioides sp. JS614 4598385 YP_921269.1 CDS Noca_0032 NC_008699.1 35225 36823 D PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; KEGG: mka:MK0828 succinate dehydrogenase/fumarate reductase, flavoprotein subunit; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 35225..36823 Nocardioides sp. JS614 4598386 YP_921270.1 CDS Noca_0033 NC_008699.1 36843 37760 D PFAM: dihydrodipicolinate synthetase; KEGG: sco:SCO1889 dihydropicolinate synthase; dihydrodipicolinate synthetase 36843..37760 Nocardioides sp. JS614 4598387 YP_921271.1 CDS Noca_0034 NC_008699.1 37757 38983 D catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate; hydroxyglutarate oxidase 37757..38983 Nocardioides sp. JS614 4598388 YP_921272.1 CDS Noca_0035 NC_008699.1 39113 39805 D PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: sco:SCO6565 transcriptional regulator; GntR family transcriptional regulator 39113..39805 Nocardioides sp. JS614 4598389 YP_921273.1 CDS Noca_0036 NC_008699.1 39830 41461 R PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: rxy:Rxyl_2477 thiamine pyrophosphate enzyme-like TPP binding region; thiamine pyrophosphate binding domain-containing protein complement(39830..41461) Nocardioides sp. JS614 4598390 YP_921274.1 CDS Noca_0037 NC_008699.1 41511 43124 R PFAM: aldehyde dehydrogenase; KEGG: nfa:nfa35030 putative aldehyde dehydrogenase; aldehyde dehydrogenase complement(41511..43124) Nocardioides sp. JS614 4598391 YP_921275.1 CDS Noca_0038 NC_008699.1 43121 43837 R PFAM: Dimethylmenaquinone methyltransferase; KEGG: pol:Bpro_2296 dimethylmenaquinone methyltransferase; hypothetical protein complement(43121..43837) Nocardioides sp. JS614 4600089 YP_921276.1 CDS Noca_0039 NC_008699.1 43915 45135 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: mes:Meso_2971 L-carnitine dehydratase/bile acid-inducible protein F; formyl-CoA transferase 43915..45135 Nocardioides sp. JS614 4600090 YP_921277.1 CDS Noca_0040 NC_008699.1 45212 46573 D PFAM: MmgE/PrpD family protein; KEGG: bur:Bcep18194_B1168 MmgE/PrpD family protein; MmgE/PrpD family protein 45212..46573 Nocardioides sp. JS614 4600091 YP_921278.1 CDS Noca_0041 NC_008699.1 46643 48025 D PFAM: extracellular solute-binding protein, family 1; KEGG: mes:Meso_4520 extracellular solute-binding protein, family 1; extracellular solute-binding protein 46643..48025 Nocardioides sp. JS614 4600092 YP_921279.1 CDS Noca_0042 NC_008699.1 48055 49050 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lin:lin0218 similar to sugar ABC transporters, permease proteins; binding-protein-dependent transport system inner membrane protein 48055..49050 Nocardioides sp. JS614 4600093 YP_921280.1 CDS Noca_0043 NC_008699.1 49062 49934 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tte:TTE1936 sugar permeases; binding-protein-dependent transport system inner membrane protein 49062..49934 Nocardioides sp. JS614 4600094 YP_921281.1 CDS Noca_0044 NC_008699.1 49963 50724 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ape:APE1484 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase; short chain enoyl-CoA hydratase 49963..50724 Nocardioides sp. JS614 4600095 YP_921282.1 CDS Noca_0045 NC_008699.1 50721 51641 D PFAM: MaoC domain protein dehydratase; dehydratase 50721..51641 Nocardioides sp. JS614 4600096 YP_921283.1 CDS Noca_0046 NC_008699.1 51689 52852 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: ppu:PP_3725 acyl-CoA dehydrogenase, putative; acyl-CoA dehydrogenase domain-containing protein complement(51689..52852) Nocardioides sp. JS614 4600097 YP_921284.1 CDS Noca_0047 NC_008699.1 52863 54101 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: mes:Meso_2971 L-carnitine dehydratase/bile acid-inducible protein F; formyl-CoA transferase complement(52863..54101) Nocardioides sp. JS614 4600098 YP_921285.1 CDS Noca_0048 NC_008699.1 54476 55060 R PFAM: GntR domain protein; KEGG: sco:SCO1410 GntR-family transcriptional regulator; GntR family transcriptional regulator complement(54476..55060) Nocardioides sp. JS614 4600099 YP_921286.1 CDS Noca_0050 NC_008699.1 56595 58040 D TIGRFAM: Dyp-type peroxidase family; KEGG: rpc:RPC_1956 Tat-translocated enzyme; Dyp-type peroxidase family protein 56595..58040 Nocardioides sp. JS614 4600101 YP_921287.1 CDS Noca_0051 NC_008699.1 58431 59273 D KEGG: pst:PSPTO_4772 hypothetical protein; hypothetical protein 58431..59273 Nocardioides sp. JS614 4600102 YP_921288.1 CDS Noca_0052 NC_008699.1 59586 60119 D hypothetical protein 59586..60119 Nocardioides sp. JS614 4600103 YP_921289.1 CDS Noca_0053 NC_008699.1 60327 60929 R hypothetical protein complement(60327..60929) Nocardioides sp. JS614 4600104 YP_921290.1 CDS Noca_0054 NC_008699.1 61631 62167 R hypothetical protein complement(61631..62167) Nocardioides sp. JS614 4600105 YP_921291.1 CDS Noca_0055 NC_008699.1 62400 62666 D KEGG: sag:SAG0550 hypothetical protein; hypothetical protein 62400..62666 Nocardioides sp. JS614 4600106 YP_921292.1 CDS Noca_0056 NC_008699.1 62748 63995 R PFAM: Glycosyl hydrolase family 32, N terminal domain protein; SMART: glycoside hydrolase, family 32; KEGG: hma:rrnAC1479 sucrose-6-phosphate hydrolase; glycosyl hydrolase family 32 protein complement(62748..63995) Nocardioides sp. JS614 4600107 YP_921293.1 CDS Noca_0057 NC_008699.1 63995 65443 R KEGG: afm:Afu5g00510 hypothetical protein; hypothetical protein complement(63995..65443) Nocardioides sp. JS614 4600108 YP_921294.1 CDS Noca_0058 NC_008699.1 65532 66548 D PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sma:SAV6288 LacI-family transcriptional regulator; LacI family transcriptional regulator 65532..66548 Nocardioides sp. JS614 4600109 YP_921295.1 CDS Noca_0059 NC_008699.1 66676 67995 D PFAM: extracellular solute-binding protein, family 1; KEGG: oih:OB0774 sugar ABC transporter sugar-binding protein; extracellular solute-binding protein 66676..67995 Nocardioides sp. JS614 4600110 YP_921296.1 CDS Noca_0060 NC_008699.1 68116 68985 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB0775 sugar ABC transporter permease; binding-protein-dependent transport systems inner membrane component 68116..68985 Nocardioides sp. JS614 4600111 YP_921297.1 CDS Noca_0061 NC_008699.1 69064 69957 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB0776 sugar ABC transporter permease; binding-protein-dependent transport system inner membrane protein 69064..69957 Nocardioides sp. JS614 4600112 YP_921298.1 CDS Noca_0062 NC_008699.1 70016 70936 D PFAM: PfkB domain protein; KEGG: rha:RHA1_ro02811 fructokinase; ribokinase-like domain-containing protein 70016..70936 Nocardioides sp. JS614 4600113 YP_921299.1 CDS Noca_0063 NC_008699.1 71344 71673 D PFAM: transposase IS3/IS911 family protein; KEGG: mbo:Mb2839c probable transposase; transposase IS3/IS911 family protein 71344..71673 Nocardioides sp. JS614 4600114 YP_921300.1 CDS Noca_0065 NC_008699.1 72341 73780 D PFAM: Integrase, catalytic region; KEGG: mmc:Mmcs_5505 integrase, catalytic region; integrase catalytic subunit 72341..73780 Nocardioides sp. JS614 4600116 YP_921301.1 CDS Noca_0068 NC_008699.1 76344 77522 R KEGG: ret:RHE_PE00355 putative inulin fructotransferase protein; inulin fructotransferase complement(76344..77522) Nocardioides sp. JS614 4600119 YP_921302.1 CDS Noca_0069 NC_008699.1 79306 79551 R hypothetical protein complement(79306..79551) Nocardioides sp. JS614 4600120 YP_921303.1 CDS Noca_0070 NC_008699.1 79607 80230 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: sco:SCO3362 hypothetical protein; lysine exporter protein LysE/YggA complement(79607..80230) Nocardioides sp. JS614 4600121 YP_921304.1 CDS Noca_0071 NC_008699.1 80377 80844 D PFAM: regulatory protein, AsnC/Lrp family; KEGG: rha:RHA1_ro03337 probable leucine-responsive regulator; AsnC family transcriptional regulator 80377..80844 Nocardioides sp. JS614 4600122 YP_921305.1 CDS Noca_0072 NC_008699.1 81382 82302 R PFAM: ornithine cyclodeaminase/mu-crystallin; Shikimate/quinate 5-dehydrogenase; KEGG: bcz:BCZK0803 ornithine cyclodeaminase; ornithine cyclodeaminase complement(81382..82302) Nocardioides sp. JS614 4600123 YP_921306.1 CDS Noca_0073 NC_008699.1 82532 83164 D PFAM: helix-turn-helix domain protein; KEGG: nfa:nfa13110 putative DNA-binding protein; helix-turn-helix domain-containing protein 82532..83164 Nocardioides sp. JS614 4600124 YP_921307.1 CDS Noca_0074 NC_008699.1 83161 83565 D KEGG: shm:Shewmr7_0115 hypothetical protein; hypothetical protein 83161..83565 Nocardioides sp. JS614 4600125 YP_921308.1 CDS Noca_0075 NC_008699.1 83670 84680 D KEGG: cgb:cg1413 secreted sugar-binding protein; sugar ABC transporter periplasmic component-like protein 83670..84680 Nocardioides sp. JS614 4600126 YP_921309.1 CDS Noca_0076 NC_008699.1 84705 86228 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO0811 putative ABC transporter ATP-binding protein; ABC transporter-like protein 84705..86228 Nocardioides sp. JS614 4600049 YP_921310.1 CDS Noca_0077 NC_008699.1 86221 87216 D PFAM: inner-membrane translocator; KEGG: sha:SH0178 ribose ABC transporter permease; inner-membrane translocator 86221..87216 Nocardioides sp. JS614 4600050 YP_921311.1 CDS Noca_0078 NC_008699.1 87213 88028 D PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bpm:BURPS1710b_3485 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 87213..88028 Nocardioides sp. JS614 4600051 YP_921312.1 CDS Noca_0079 NC_008699.1 88141 90204 D PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: mta:Moth_1967 5-oxoprolinase (ATP-hydrolyzing); 5-oxoprolinase 88141..90204 Nocardioides sp. JS614 4600052 YP_921313.1 CDS Noca_0080 NC_008699.1 90197 91915 D PFAM: Hydantoinase B/oxoprolinase; KEGG: gka:GK2893 N-methylhydantoinase B (ATP-hydrolyzing); 5-oxoprolinase 90197..91915 Nocardioides sp. JS614 4600053 YP_921314.1 CDS Noca_0081 NC_008699.1 91912 92895 D PFAM: peptidase M19, renal dipeptidase; KEGG: mlo:mlr6286 similar to dipeptidase; peptidase M19, renal dipeptidase 91912..92895 Nocardioides sp. JS614 4600054 YP_921315.1 CDS Noca_0082 NC_008699.1 92896 94077 D PFAM: FAD dependent oxidoreductase; KEGG: sma:SAV1734 oxidoreductase; FAD dependent oxidoreductase 92896..94077 Nocardioides sp. JS614 4600055 YP_921316.1 CDS Noca_0083 NC_008699.1 94074 94412 D KEGG: sma:SAV1733 hypothetical protein; hypothetical protein 94074..94412 Nocardioides sp. JS614 4600056 YP_921317.1 CDS Noca_0084 NC_008699.1 94405 95871 D PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; BFD domain protein [2Fe-2S]-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sco:SCO6291 secreted oxidase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 94405..95871 Nocardioides sp. JS614 4600057 YP_921318.1 CDS Noca_0085 NC_008699.1 95879 96811 D PFAM: dihydrodipicolinate synthetase; KEGG: sma:SAV1731 putative dihydrodipicolinate synthase; dihydrodipicolinate synthetase 95879..96811 Nocardioides sp. JS614 4600058 YP_921319.1 CDS Noca_0086 NC_008699.1 96812 98341 D PFAM: aldehyde dehydrogenase; KEGG: rha:RHA1_ro02898 aldehyde dehydrogenase (NADP+); aldehyde dehydrogenase 96812..98341 Nocardioides sp. JS614 4600059 YP_921320.1 CDS Noca_0087 NC_008699.1 98382 99533 R KEGG: sma:SAV2725 transcriptional regulator; CdaR family transcriptional regulator complement(98382..99533) Nocardioides sp. JS614 4600060 YP_921321.1 CDS Noca_0088 NC_008699.1 99617 100543 D PFAM: Proline dehydrogenase; KEGG: tfu:Tfu_0434 proline dehydrogenase; L-proline dehydrogenase 99617..100543 Nocardioides sp. JS614 4600061 YP_921322.1 CDS Noca_0089 NC_008699.1 100572 102200 D TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: tfu:Tfu_0433 delta-1-pyrroline-5-carboxylate dehydrogenase 1; delta-1-pyrroline-5-carboxylate dehydrogenase 100572..102200 Nocardioides sp. JS614 4600062 YP_921323.1 CDS Noca_0090 NC_008699.1 102208 102804 R PFAM: beta-lactamase domain protein; KEGG: plu:plu2238 hypothetical protein; beta-lactamase domain-containing protein complement(102208..102804) Nocardioides sp. JS614 4600063 YP_921324.1 CDS Noca_0092 NC_008699.1 103558 104406 D TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: tfu:Tfu_1968 allophanate hydrolase subunit 2; urea amidolyase-like protein 103558..104406 Nocardioides sp. JS614 4600065 YP_921325.1 CDS Noca_0093 NC_008699.1 104442 105254 D PFAM: protein of unknown function DUF1445; KEGG: pst:PSPTO_5379 hypothetical protein; hypothetical protein 104442..105254 Nocardioides sp. JS614 4600066 YP_921326.1 CDS Noca_0094 NC_008699.1 105424 106143 D PFAM: Asp/Glu racemase; KEGG: chy:CHY_1338 hydantoin racemase; Asp/Glu racemase 105424..106143 Nocardioides sp. JS614 4600067 YP_921327.1 CDS Noca_0095 NC_008699.1 106207 107760 D PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: mlo:mll9131 hydantoinase; hydantoinase/oxoprolinase 106207..107760 Nocardioides sp. JS614 4600068 YP_921328.1 CDS Noca_0096 NC_008699.1 107763 108863 D PFAM: protein of unknown function DUF917; KEGG: mlo:mll9130 hypothetical protein; hypothetical protein 107763..108863 Nocardioides sp. JS614 4600069 YP_921329.1 CDS Noca_0097 NC_008699.1 108849 110423 R KEGG: sco:SCO1052 regulatory protein; regulator of polyketide synthase expression-like complement(108849..110423) Nocardioides sp. JS614 4600070 YP_921330.1 CDS Noca_0098 NC_008699.1 110420 111496 R PFAM: protein of unknown function DUF917; KEGG: mes:Meso_1849 protein of unknown function DUF917; hypothetical protein complement(110420..111496) Nocardioides sp. JS614 4600071 YP_921331.1 CDS Noca_0099 NC_008699.1 111687 112889 D KEGG: rha:RHA1_ro02908 possible ABC sugar transporter, substrate binding component; sugar ABC transporter periplasmic component-like protein 111687..112889 Nocardioides sp. JS614 4600072 YP_921332.1 CDS Noca_0100 NC_008699.1 112886 114469 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rha:RHA1_ro09082 ABC sugar transporter, ATP-binding component; ABC transporter-like protein 112886..114469 Nocardioides sp. JS614 4600073 YP_921333.1 CDS Noca_0101 NC_008699.1 114503 115531 D PFAM: inner-membrane translocator; KEGG: rha:RHA1_ro11174 ABC sugar transporter, permease component; inner-membrane translocator 114503..115531 Nocardioides sp. JS614 4600074 YP_921334.1 CDS Noca_0102 NC_008699.1 115531 116544 D PFAM: peptidase M19, renal dipeptidase; KEGG: dsy:DSY1937 hypothetical protein; thermostable dipeptidase 115531..116544 Nocardioides sp. JS614 4600075 YP_921335.1 CDS Noca_0103 NC_008699.1 116718 117023 D hypothetical protein 116718..117023 Nocardioides sp. JS614 4600076 YP_921336.1 CDS Noca_0104 NC_008699.1 117020 117724 D hypothetical protein 117020..117724 Nocardioides sp. JS614 4600077 YP_921337.1 CDS Noca_0105 NC_008699.1 118138 118839 R KEGG: rha:RHA1_ro00813 possible lipoate-protein ligase A; putative lipoate-protein ligase A complement(118138..118839) Nocardioides sp. JS614 4600078 YP_921338.1 CDS Noca_0106 NC_008699.1 119154 119783 D PFAM: peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins; KEGG: mmc:Mmcs_0342 peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins; peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins 119154..119783 Nocardioides sp. JS614 4600079 YP_921339.1 CDS Noca_0107 NC_008699.1 119846 120730 D PFAM: aldo/keto reductase; KEGG: sma:SAV1050 oxidoreductase; aldo/keto reductase 119846..120730 Nocardioides sp. JS614 4600080 YP_921340.1 CDS Noca_0108 NC_008699.1 120754 121770 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: dge:Dgeo_2864 alcohol dehydrogenase GroES-like; alcohol dehydrogenase complement(120754..121770) Nocardioides sp. JS614 4600081 YP_921341.1 CDS Noca_0109 NC_008699.1 121874 124267 D KEGG: sco:SCO1740 hypothetical protein; hypothetical protein 121874..124267 Nocardioides sp. JS614 4600082 YP_921342.1 CDS Noca_0110 NC_008699.1 124300 124935 D hypothetical protein 124300..124935 Nocardioides sp. JS614 4600083 YP_921343.1 CDS Noca_0111 NC_008699.1 124963 125349 R hypothetical protein complement(124963..125349) Nocardioides sp. JS614 4600084 YP_921344.1 CDS Noca_0112 NC_008699.1 125387 125824 D PFAM: cyclase/dehydrase; cyclase/dehydrase 125387..125824 Nocardioides sp. JS614 4600085 YP_921345.1 CDS Noca_0113 NC_008699.1 126048 127421 D PFAM: amino acid-binding ACT domain protein; malic enzyme domain protein; malic enzyme, NAD-binding; KEGG: tfu:Tfu_2390 malate dehydrogenase (oxaloacetate decarboxylating); malate dehydrogenase 126048..127421 Nocardioides sp. JS614 4600086 YP_921346.1 CDS Noca_0114 NC_008699.1 127444 129465 R PFAM: MMPL domain protein; KEGG: mmc:Mmcs_0519 MmpL; MMPL domain-containing protein complement(127444..129465) Nocardioides sp. JS614 4600087 YP_921347.1 CDS Noca_0115 NC_008699.1 129511 130020 D PFAM: regulatory protein, MarR; KEGG: rxy:Rxyl_1740 transcriptional regulator, MarR family; regulatory protein MarR 129511..130020 Nocardioides sp. JS614 4600088 YP_921348.1 CDS Noca_0116 NC_008699.1 129996 130754 R PFAM: ROK family protein; KEGG: lxx:Lxx09960 glucokinase; polyphosphate glucokinase complement(129996..130754) Nocardioides sp. JS614 4597565 YP_921349.1 CDS Noca_0117 NC_008699.1 130799 131413 D PFAM: transcriptional regulator PadR family protein; KEGG: nfa:nfa31300 putative transcriptional regulator; PadR family transcriptional regulator 130799..131413 Nocardioides sp. JS614 4597566 YP_921350.1 CDS Noca_0118 NC_008699.1 131399 132259 R PFAM: protein of unknown function DUF88; KEGG: dvu:DVU0091 hypothetical protein; hypothetical protein complement(131399..132259) Nocardioides sp. JS614 4597567 YP_921351.1 CDS Noca_0119 NC_008699.1 132342 133082 D PFAM: protein of unknown function DUF1503; KEGG: sco:SCO1068 hypothetical protein; hypothetical protein 132342..133082 Nocardioides sp. JS614 4597568 YP_921352.1 CDS Noca_0120 NC_008699.1 133252 134268 D KEGG: tfu:Tfu_1447 ABC-type multidrug transport system ATPase component; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; daunorubicin resistance ABC transporter ATPase subunit 133252..134268 Nocardioides sp. JS614 4597569 YP_921353.1 CDS Noca_0121 NC_008699.1 134268 135026 D PFAM: ABC-2 type transporter; KEGG: sco:SCO5382 putative ABC transporter, integral membrane subunit; ABC transporter 134268..135026 Nocardioides sp. JS614 4597570 YP_921354.1 CDS Noca_0122 NC_008699.1 135349 136794 D PFAM: Rubredoxin-type Fe(Cys)4 protein; fatty acid desaturase; KEGG: nfa:nfa46180 putative alkane-1-monooxygenase; alkane 1-monooxygenase 135349..136794 Nocardioides sp. JS614 4597571 YP_921355.1 CDS Noca_0123 NC_008699.1 136857 137420 D PFAM: regulatory protein, TetR; KEGG: mmc:Mmcs_3220 transcriptional regulator, TetR family; regulatory protein TetR 136857..137420 Nocardioides sp. JS614 4597572 YP_921356.1 CDS Noca_0124 NC_008699.1 137752 139167 D TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV4524 transmembrane efflux protein; EmrB/QacA family drug resistance transporter 137752..139167 Nocardioides sp. JS614 4597573 YP_921357.1 CDS Noca_0125 NC_008699.1 139333 139515 D hypothetical protein 139333..139515 Nocardioides sp. JS614 4597574 YP_921358.1 CDS Noca_0126 NC_008699.1 139639 139860 D hypothetical protein 139639..139860 Nocardioides sp. JS614 4597575 YP_921359.1 CDS Noca_0127 NC_008699.1 139877 140725 R TIGRFAM: formyltetrahydrofolate deformylase; PFAM: formyl transferase domain protein; amino acid-binding ACT domain protein; KEGG: bte:BTH_I0496 formyltetrahydrofolate deformylase; formyltetrahydrofolate deformylase complement(139877..140725) Nocardioides sp. JS614 4597576 YP_921360.1 CDS Noca_0128 NC_008699.1 140747 142054 D KEGG: nha:Nham_2367 hypothetical protein; hypothetical protein 140747..142054 Nocardioides sp. JS614 4597577 YP_921361.1 CDS Noca_0129 NC_008699.1 142051 142431 D hypothetical protein 142051..142431 Nocardioides sp. JS614 4597578 YP_921362.1 CDS Noca_0130 NC_008699.1 142477 143439 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: mmc:Mmcs_1554 alcohol dehydrogenase, zinc-binding protein; alcohol dehydrogenase 142477..143439 Nocardioides sp. JS614 4597579 YP_921363.1 CDS Noca_0131 NC_008699.1 143575 145524 D PFAM: peptidase M13, neprilysin; peptidase M13; KEGG: fal:FRAAL4107 zinc metalloendopeptidase; endothelin-converting protein 1 143575..145524 Nocardioides sp. JS614 4597580 YP_921364.1 CDS Noca_0132 NC_008699.1 145778 146350 R hypothetical protein complement(145778..146350) Nocardioides sp. JS614 4597581 YP_921365.1 CDS Noca_0133 NC_008699.1 146475 148619 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sma:SAV2450 putative ATP-dependent DNA helicase; DEAD/DEAH box helicase 146475..148619 Nocardioides sp. JS614 4597582 YP_921366.1 CDS Noca_0134 NC_008699.1 148881 149261 D hypothetical protein 148881..149261 Nocardioides sp. JS614 4597583 YP_921367.1 CDS Noca_0135 NC_008699.1 149285 149956 D hypothetical protein 149285..149956 Nocardioides sp. JS614 4597584 YP_921368.1 CDS Noca_0136 NC_008699.1 150060 151574 R TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro01949 multidrug resistance transporter, MFS superfamily; EmrB/QacA family drug resistance transporter complement(150060..151574) Nocardioides sp. JS614 4597585 YP_921369.1 CDS Noca_0137 NC_008699.1 151665 152153 R PFAM: glutathione peroxidase; KEGG: nfa:nfa46650 putative glutathione peroxidase; glutathione peroxidase complement(151665..152153) Nocardioides sp. JS614 4597586 YP_921370.1 CDS Noca_0138 NC_008699.1 152214 154925 D PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sco:SCO1167 helicase; SNF2-like protein 152214..154925 Nocardioides sp. JS614 4597587 YP_921371.1 CDS Noca_0139 NC_008699.1 154925 155605 D PFAM: zinc finger, SWIM domain protein; KEGG: sma:SAV368 hypothetical protein; zinc finger SWIM domain-containing protein 154925..155605 Nocardioides sp. JS614 4597588 YP_921372.1 CDS Noca_0140 NC_008699.1 155620 156168 R PFAM: regulatory protein, TetR; KEGG: fra:Francci3_2248 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(155620..156168) Nocardioides sp. JS614 4597589 YP_921373.1 CDS Noca_0141 NC_008699.1 156321 156584 R PFAM: protein of unknown function DUF156; KEGG: cef:CE0057 hypothetical protein; hypothetical protein complement(156321..156584) Nocardioides sp. JS614 4597590 YP_921374.1 CDS Noca_0142 NC_008699.1 156586 156990 R PFAM: protein of unknown function DUF302; KEGG: nfa:nfa41010 hypothetical protein; hypothetical protein complement(156586..156990) Nocardioides sp. JS614 4597591 YP_921375.1 CDS Noca_0143 NC_008699.1 156987 157367 R TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: nfa:nfa18780 putative thioredoxin; thioredoxin complement(156987..157367) Nocardioides sp. JS614 4597592 YP_921376.1 CDS Noca_0144 NC_008699.1 157493 159649 D PFAM: MMPL domain protein; KEGG: nfa:pnf2660 hypothetical protein; MMPL domain-containing protein 157493..159649 Nocardioides sp. JS614 4597593 YP_921377.1 CDS Noca_0145 NC_008699.1 159674 159841 D KEGG: cgb:cg1481 hypothetical protein; hypothetical protein 159674..159841 Nocardioides sp. JS614 4597594 YP_921378.1 CDS Noca_0146 NC_008699.1 160034 161599 D PFAM: Hyalin; KEGG: hch:HCH_03306 protein of unknown function (DUF1555); hyalin 160034..161599 Nocardioides sp. JS614 4597595 YP_921379.1 CDS Noca_0147 NC_008699.1 161748 163259 D PFAM: carboxyl transferase; KEGG: sco:SCO2776 acetyl/propionyl CoA carboxylase, beta subunit; propionyl-CoA carboxylase 161748..163259 Nocardioides sp. JS614 4597596 YP_921380.1 CDS Noca_0148 NC_008699.1 163348 165252 D PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: rso:RSc0265 probable acyl-CoA carboxylase alpha chain protein; carbamoyl-phosphate synthase subunit L 163348..165252 Nocardioides sp. JS614 4597597 YP_921381.1 CDS Noca_0149 NC_008699.1 165252 166199 D PFAM: pyruvate carboxyltransferase; KEGG: sma:SAV5276 putative hydroxymethylglutaryl-CoA lyase; hydroxymethylglutaryl-CoA lyase 165252..166199 Nocardioides sp. JS614 4597598 YP_921382.1 CDS Noca_0150 NC_008699.1 166369 167466 D KEGG: syd:Syncc9605_2166 hypothetical protein; hypothetical protein 166369..167466 Nocardioides sp. JS614 4597599 YP_921383.1 CDS Noca_0151 NC_008699.1 167474 168574 D hypothetical protein 167474..168574 Nocardioides sp. JS614 4598927 YP_921384.1 CDS Noca_0152 NC_008699.1 168571 169785 D hypothetical protein 168571..169785 Nocardioides sp. JS614 4598928 YP_921385.1 CDS Noca_0153 NC_008699.1 169746 170450 R KEGG: pac:PPA2088 hypothetical protein; hypothetical protein complement(169746..170450) Nocardioides sp. JS614 4598929 YP_921386.1 CDS aat NC_008699.1 170563 171246 D leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 170563..171246 Nocardioides sp. JS614 4598930 YP_921387.1 CDS Noca_0155 NC_008699.1 171243 171833 D hypothetical protein 171243..171833 Nocardioides sp. JS614 4598931 YP_921388.1 CDS Noca_0156 NC_008699.1 171864 172199 R PFAM: Rhodanese domain protein; KEGG: sco:SCO3839 hypothetical protein; rhodanese domain-containing protein complement(171864..172199) Nocardioides sp. JS614 4598932 YP_921389.1 CDS Noca_0157 NC_008699.1 172231 173097 R PFAM: Formamidopyrimidine-DNA glycolase; KEGG: lxx:Lxx00140 formamidopyrimidine-DNA glycosylase; bifunctional DNA-(apurinic or apyrimidinic site) lyase/formamidopyrimidine-DNA glycosylase complement(172231..173097) Nocardioides sp. JS614 4598933 YP_921390.1 CDS Noca_0158 NC_008699.1 173255 173677 D hypothetical protein 173255..173677 Nocardioides sp. JS614 4598934 YP_921391.1 CDS Noca_0159 NC_008699.1 173827 175029 D KEGG: rha:RHA1_ro02400 hypothetical protein; hypothetical protein 173827..175029 Nocardioides sp. JS614 4598935 YP_921392.1 CDS Noca_0160 NC_008699.1 175148 175516 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mlo:mlr1095 hypothetical protein; methylmalonyl-CoA epimerase 175148..175516 Nocardioides sp. JS614 4598936 YP_921393.1 CDS Noca_0161 NC_008699.1 175513 176310 D PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sma:SAV4224 putative phosphodiesterase; glycerophosphoryl diester phosphodiesterase 175513..176310 Nocardioides sp. JS614 4598937 YP_921394.1 CDS Noca_0162 NC_008699.1 176321 177259 D PFAM: SEC-C motif domain protein; KEGG: sma:SAV4226 hypothetical protein; SecC motif-containing protein 176321..177259 Nocardioides sp. JS614 4598938 YP_921395.1 CDS Noca_0163 NC_008699.1 177386 178240 R KEGG: sma:SAV5728 hypothetical protein; hypothetical protein complement(177386..178240) Nocardioides sp. JS614 4598939 YP_921396.1 CDS Noca_0164 NC_008699.1 178261 179376 R PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: rha:RHA1_ro05084 probable adenylate cyclase; adenylyl cyclase class-3/4/guanylyl cyclase complement(178261..179376) Nocardioides sp. JS614 4598940 YP_921397.1 CDS Noca_0165 NC_008699.1 179430 179804 R PFAM: cyclic nucleotide-binding; KEGG: mmc:Mmcs_2490 cyclic nucleotide-binding protein; cyclic nucleotide-binding protein complement(179430..179804) Nocardioides sp. JS614 4598941 YP_921398.1 CDS Noca_0166 NC_008699.1 179899 181122 R catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase complement(179899..181122) Nocardioides sp. JS614 4598942 YP_921399.1 CDS Noca_0167 NC_008699.1 181155 181745 R PFAM: protein of unknown function UPF0016; KEGG: fal:FRAAL0931 hypothetical protein; hypothetical protein complement(181155..181745) Nocardioides sp. JS614 4598943 YP_921400.1 CDS Noca_0168 NC_008699.1 181745 182926 R PFAM: protein of unknown function DUF111; KEGG: cef:CE2361 hypothetical protein; hypothetical protein complement(181745..182926) Nocardioides sp. JS614 4598944 YP_921401.1 CDS Noca_0169 NC_008699.1 182923 183609 R KEGG: syc:syc0382_d circadian phase modifier CpmA; circadian phase modifier CpmA complement(182923..183609) Nocardioides sp. JS614 4598945 YP_921402.1 CDS Noca_0170 NC_008699.1 183811 184674 R PFAM: prephenate dehydratase; KEGG: rpa:RPA3695 chorismate mutase/prephenate dehydratase; prephenate dehydratase complement(183811..184674) Nocardioides sp. JS614 4598946 YP_921403.1 CDS Noca_0171 NC_008699.1 184780 185208 D KEGG: sth:STH3328 hypothetical protein; hypothetical protein 184780..185208 Nocardioides sp. JS614 4598947 YP_921404.1 CDS Noca_0172 NC_008699.1 185229 185696 D PFAM: Mycobacterium tuberculosis paralogous family 11; KEGG: rha:RHA1_ro02638 hypothetical protein; hypothetical protein 185229..185696 Nocardioides sp. JS614 4598948 YP_921405.1 CDS Noca_0173 NC_008699.1 185796 187316 R PFAM: phosphoesterase, PA-phosphatase related; diacylglycerol kinase, catalytic region; KEGG: lxx:Lxx21980 hypothetical protein; PA-phosphatase-like phosphoesterase complement(185796..187316) Nocardioides sp. JS614 4598949 YP_921406.1 CDS Noca_0174 NC_008699.1 187506 188780 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 187506..188780 Nocardioides sp. JS614 4598950 YP_921407.1 CDS Noca_0175 NC_008699.1 188777 189625 D TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; KEGG: pac:PPA2205 hydrolase (HAD superfamily); HAD family hydrolase 188777..189625 Nocardioides sp. JS614 4598951 YP_921408.1 CDS Noca_0176 NC_008699.1 189625 190122 D PFAM: GCN5-related N-acetyltransferase; KEGG: sco:SCO4311 hypothetical protein; N-acetyltransferase GCN5 189625..190122 Nocardioides sp. JS614 4598952 YP_921409.1 CDS Noca_0177 NC_008699.1 190119 190913 D TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; KEGG: sco:SCO3950 hypothetical protein; HAD family hydrolase 190119..190913 Nocardioides sp. JS614 4598953 YP_921410.1 CDS Noca_0178 NC_008699.1 190923 191534 D hypothetical protein 190923..191534 Nocardioides sp. JS614 4598954 YP_921411.1 CDS Noca_0179 NC_008699.1 191631 192209 R KEGG: tfu:Tfu_0071 hypothetical protein; hypothetical protein complement(191631..192209) Nocardioides sp. JS614 4598994 YP_921412.1 CDS Noca_0180 NC_008699.1 192241 193218 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sma:SAV4368 quinone oxidoreductase; alcohol dehydrogenase complement(192241..193218) Nocardioides sp. JS614 4598995 YP_921413.1 CDS Noca_0181 NC_008699.1 193256 193606 R KEGG: sco:SCO3828 molybdopterin-guanine dinucleotide biosynthesis protein; hypothetical protein complement(193256..193606) Nocardioides sp. JS614 4598996 YP_921414.1 CDS Noca_0182 NC_008699.1 193659 194276 R KEGG: sma:SAV4365 molybdopterin-guanine dinucleotide biosynthesis protein; molybdopterin-guanine dinucleotide biosynthesis protein complement(193659..194276) Nocardioides sp. JS614 4598997 YP_921415.1 CDS Noca_0183 NC_008699.1 194312 195097 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: nfa:nfa46820 putative hydrolase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 194312..195097 Nocardioides sp. JS614 4598998 YP_921416.1 CDS Noca_0184 NC_008699.1 195109 196179 D hypothetical protein 195109..196179 Nocardioides sp. JS614 4598999 YP_921417.1 CDS Noca_0185 NC_008699.1 196213 196446 D PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: fra:Francci3_3765 biotin/lipoyl attachment; biotin/lipoyl attachment domain-containing protein 196213..196446 Nocardioides sp. JS614 4599000 YP_921418.1 CDS Noca_0186 NC_008699.1 196675 197058 R hypothetical protein complement(196675..197058) Nocardioides sp. JS614 4599002 YP_921419.1 CDS Noca_0187 NC_008699.1 197169 197642 D hypothetical protein 197169..197642 Nocardioides sp. JS614 4599003 YP_921420.1 CDS Noca_0188 NC_008699.1 197905 198672 D PFAM: regulatory protein, LuxR; Helix-turn-helix, type 11 domain protein; Sigma-70, region 4 type 2; KEGG: sma:SAV86 erythropoiesis-stimulating protein; regulatory protein LuxR 197905..198672 Nocardioides sp. JS614 4599005 YP_921421.1 CDS Noca_0189 NC_008699.1 199226 200248 R KEGG: sco:SCO2686 LuxR-family transcriptional regulator; LuxR family transcriptional regulator complement(199226..200248) Nocardioides sp. JS614 4599006 YP_921422.1 CDS Noca_0190 NC_008699.1 200387 202231 R catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP; phosphoenolpyruvate carboxykinase complement(200387..202231) Nocardioides sp. JS614 4599007 YP_921423.1 CDS Noca_0191 NC_008699.1 202837 204369 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: mbu:Mbur_0510 external sensor signal transduction histidine kinase; ATPase domain-containing protein complement(202837..204369) Nocardioides sp. JS614 4599009 YP_921424.1 CDS Noca_0192 NC_008699.1 204621 205559 D TIGRFAM: phosphate binding protein; KEGG: tth:TTC1726 phosphate-binding protein; phosphate binding protein 204621..205559 Nocardioides sp. JS614 4599010 YP_921425.1 CDS Noca_0193 NC_008699.1 205714 206400 D KEGG: rxy:Rxyl_3061 hypothetical protein; hypothetical protein 205714..206400 Nocardioides sp. JS614 4599011 YP_921426.1 CDS Noca_0194 NC_008699.1 206511 208160 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: sth:STH749 two-component sensor kinase, probably involved in phosphate sensing; ATPase domain-containing protein 206511..208160 Nocardioides sp. JS614 4599012 YP_921427.1 CDS Noca_0195 NC_008699.1 208335 208481 D KEGG: mtc:MT1192 hypothetical protein; hypothetical protein 208335..208481 Nocardioides sp. JS614 4599013 YP_921428.1 CDS Noca_0196 NC_008699.1 208506 209549 R PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: dge:Dgeo_2243 transcriptional regulator, LacI family; periplasmic binding protein/LacI transcriptional regulator complement(208506..209549) Nocardioides sp. JS614 4599014 YP_921429.1 CDS Noca_0197 NC_008699.1 209959 212736 R PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: sco:SCO2226 bi-functional protein (secreted alpha-amylase/dextrinase); alpha amylase catalytic subunit complement(209959..212736) Nocardioides sp. JS614 4599015 YP_921430.1 CDS Noca_0198 NC_008699.1 212830 214140 R PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: sil:SPO1469 3-ketosteroid dehydrogenase, putative; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein complement(212830..214140) Nocardioides sp. JS614 4599016 YP_921431.1 CDS Noca_0199 NC_008699.1 214140 214934 R KEGG: sil:SPO1461 hypothetical protein; hydantoin racemase-like protein complement(214140..214934) Nocardioides sp. JS614 4599017 YP_921432.1 CDS Noca_0200 NC_008699.1 214931 216397 R PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: bxe:Bxe_B1003 putative succinate dehydrogenase/fumarate reductase, flavoprotein subunit; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein complement(214931..216397) Nocardioides sp. JS614 4599018 YP_921433.1 CDS Noca_0201 NC_008699.1 216394 216990 R PFAM: isochorismatase hydrolase; KEGG: bur:Bcep18194_C7071 isochorismatase hydrolase; isochorismatase hydrolase complement(216394..216990) Nocardioides sp. JS614 4599019 YP_921434.1 CDS Noca_0202 NC_008699.1 217019 217738 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: sil:SPO0595 gluconate 5-dehydrogenase; short-chain dehydrogenase/reductase SDR complement(217019..217738) Nocardioides sp. JS614 4598955 YP_921435.1 CDS Noca_0203 NC_008699.1 217732 219144 R PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: bbr:BB3064 hypothetical protein; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein complement(217732..219144) Nocardioides sp. JS614 4598956 YP_921436.1 CDS Noca_0204 NC_008699.1 219141 220118 R KEGG: bbr:BB0718 carboxyvinyl-carboxyphosphonate phosphorylmutase; 2,3-dimethylmalate lyase complement(219141..220118) Nocardioides sp. JS614 4598957 YP_921437.1 CDS Noca_0205 NC_008699.1 220244 221431 R KEGG: rme:Rmet_5998 hypothetical protein; hypothetical protein complement(220244..221431) Nocardioides sp. JS614 4598958 YP_921438.1 CDS Noca_0206 NC_008699.1 221618 222793 D PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: nfa:nfa33590 hypothetical protein; acyl-CoA dehydrogenase type 2 221618..222793 Nocardioides sp. JS614 4598959 YP_921439.1 CDS Noca_0207 NC_008699.1 222790 223707 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mmc:Mmcs_1630 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 222790..223707 Nocardioides sp. JS614 4598960 YP_921440.1 CDS Noca_0208 NC_008699.1 223704 224579 D PFAM: alpha/beta hydrolase fold; KEGG: ttj:TTHB237 2-hydroxymuconic semialdehyde hydrolase; alpha/beta hydrolase fold protein 223704..224579 Nocardioides sp. JS614 4598961 YP_921441.1 CDS Noca_0209 NC_008699.1 224615 225790 D PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: bur:Bcep18194_B1413 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase type 2 224615..225790 Nocardioides sp. JS614 4598962 YP_921442.1 CDS Noca_0210 NC_008699.1 225787 226626 D PFAM: alpha/beta hydrolase fold; KEGG: ttj:TTHB237 2-hydroxymuconic semialdehyde hydrolase; alpha/beta hydrolase fold protein 225787..226626 Nocardioides sp. JS614 4598963 YP_921443.1 CDS Noca_0211 NC_008699.1 226637 227491 D PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: rha:RHA1_ro04906 hypothetical protein; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase 226637..227491 Nocardioides sp. JS614 4598964 YP_921444.1 CDS Noca_0212 NC_008699.1 227624 227929 R hypothetical protein complement(227624..227929) Nocardioides sp. JS614 4598965 YP_921445.1 CDS Noca_0213 NC_008699.1 228226 230379 D KEGG: fal:FRAAL4811 putative superfamily I DNA and RNA helicases; superfamily I DNA and RNA helicase 228226..230379 Nocardioides sp. JS614 4598966 YP_921446.1 CDS Noca_0214 NC_008699.1 230366 230893 R hypothetical protein complement(230366..230893) Nocardioides sp. JS614 4598967 YP_921447.1 CDS Noca_0215 NC_008699.1 231042 231788 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc02358 putative high-affinity branched-chain amino acid transport ATP-binding ABC transporter protein; ABC transporter-like protein complement(231042..231788) Nocardioides sp. JS614 4598968 YP_921448.1 CDS Noca_0216 NC_008699.1 231838 233535 R PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: dra:DRA0261 branched-chain amino acid transport system ATP-binding protein; ABC transporter-like protein complement(231838..233535) Nocardioides sp. JS614 4598969 YP_921449.1 CDS Noca_0217 NC_008699.1 233538 234467 R PFAM: inner-membrane translocator; KEGG: gka:GK2979 branched-chain amino acid ABC transporter (permease); inner-membrane translocator complement(233538..234467) Nocardioides sp. JS614 4598970 YP_921450.1 CDS Noca_0218 NC_008699.1 234534 235880 R KEGG: nfa:nfa52540 hypothetical protein; ABC-type branched-chain amino acid transport systems periplasmic component-like complement(234534..235880) Nocardioides sp. JS614 4598971 YP_921451.1 CDS Noca_0219 NC_008699.1 236113 236748 D PFAM: regulatory protein, TetR; KEGG: mpa:MAP1732c hypothetical protein; regulatory protein TetR 236113..236748 Nocardioides sp. JS614 4598972 YP_921452.1 CDS Noca_0220 NC_008699.1 236745 237353 D PFAM: regulatory protein, TetR; KEGG: mpa:MAP1732c hypothetical protein; regulatory protein TetR 236745..237353 Nocardioides sp. JS614 4598973 YP_921453.1 CDS Noca_0221 NC_008699.1 237463 238644 D PFAM: flavin reductase domain protein, FMN-binding; KEGG: nar:Saro_1462 flavin reductase-like, FMN-binding; flavin reductase domain-containing protein 237463..238644 Nocardioides sp. JS614 4598974 YP_921454.1 CDS Noca_0222 NC_008699.1 238856 239734 D PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: mtc:MT0390 carbon monoxide dehydrogenase, medium subunit, putative; molybdopterin dehydrogenase 238856..239734 Nocardioides sp. JS614 4598975 YP_921455.1 CDS Noca_0223 NC_008699.1 239725 240201 D PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rha:RHA1_ro05231 possible carbon monoxide dehydrogenase; 2Fe-2S iron-sulfur cluster binding domain-containing protein 239725..240201 Nocardioides sp. JS614 4598976 YP_921456.1 CDS Noca_0224 NC_008699.1 240198 242573 D TIGRFAM: carbon-monoxide dehydrogenase, large subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: mmc:Mmcs_0491 carbon-monoxide dehydrogenase, large subunit; carbon monoxide dehydrogenase, large subunit 240198..242573 Nocardioides sp. JS614 4598977 YP_921457.1 CDS Noca_0225 NC_008699.1 242554 243147 D KEGG: mbo:Mb0378c hypothetical protein; hypothetical protein 242554..243147 Nocardioides sp. JS614 4598978 YP_921458.1 CDS Noca_0226 NC_008699.1 243144 244100 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: mbo:Mb0384 probable transcriptional regulatory protein (probably LysR-family); substrate-binding protein LysR 243144..244100 Nocardioides sp. JS614 4598979 YP_921459.1 CDS Noca_0227 NC_008699.1 244209 244517 D hypothetical protein 244209..244517 Nocardioides sp. JS614 4598980 YP_921460.1 CDS Noca_0228 NC_008699.1 244517 245392 D PFAM: molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: mmc:Mmcs_0489 carbon-monoxide dehydrogenase; molybdopterin dehydrogenase 244517..245392 Nocardioides sp. JS614 4598981 YP_921461.1 CDS Noca_0229 NC_008699.1 245389 245934 D PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rxy:Rxyl_0111 (2Fe-2S)-binding protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein 245389..245934 Nocardioides sp. JS614 4598982 YP_921462.1 CDS Noca_0230 NC_008699.1 245931 248345 D KEGG: rha:RHA1_ro05232 possible carbon monoxide dehydrogenase; TIGRFAM: carbon-monoxide dehydrogenase, large subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; xanthine dehydrogenase, molybdenum binding subunit apoprotein 245931..248345 Nocardioides sp. JS614 4598983 YP_921463.1 CDS Noca_0231 NC_008699.1 248342 249241 D PFAM: protein of unknown function DUF182; YHS domain protein; SMART: TRASH domain protein; KEGG: rha:RHA1_ro05233 hypothetical protein; hypothetical protein 248342..249241 Nocardioides sp. JS614 4598984 YP_921464.1 CDS Noca_0232 NC_008699.1 249243 249839 D PFAM: carbon monoxide dehydrogenase subunit G; KEGG: rha:RHA1_ro05235 hypothetical protein; carbon monoxide dehydrogenase subunit G 249243..249839 Nocardioides sp. JS614 4598985 YP_921465.1 CDS Noca_0233 NC_008699.1 249839 250090 D hypothetical protein 249839..250090 Nocardioides sp. JS614 4598986 YP_921466.1 CDS Noca_0234 NC_008699.1 250334 250588 D hypothetical protein 250334..250588 Nocardioides sp. JS614 4598987 YP_921467.1 CDS Noca_0235 NC_008699.1 250590 250877 D hypothetical protein 250590..250877 Nocardioides sp. JS614 4598988 YP_921468.1 CDS Noca_0236 NC_008699.1 250874 251236 D hypothetical protein 250874..251236 Nocardioides sp. JS614 4598989 YP_921469.1 CDS Noca_0237 NC_008699.1 251277 251729 R hypothetical protein complement(251277..251729) Nocardioides sp. JS614 4598990 YP_921470.1 CDS Noca_0238 NC_008699.1 251737 252864 R PFAM: VWA containing CoxE family protein; SMART: von Willebrand factor, type A; KEGG: rxy:Rxyl_0115 VWA containing CoxE-like protein; VWA containing CoxE family protein complement(251737..252864) Nocardioides sp. JS614 4598991 YP_921471.1 CDS Noca_0239 NC_008699.1 252857 253732 R PFAM: ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rxy:Rxyl_0114 ATPase associated with various cellular activities, AAA_5; ATPase complement(252857..253732) Nocardioides sp. JS614 4598992 YP_921472.1 CDS Noca_0240 NC_008699.1 253754 253996 R hypothetical protein complement(253754..253996) Nocardioides sp. JS614 4598993 YP_921473.1 CDS Noca_0241 NC_008699.1 254151 255320 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: tfu:Tfu_0068 putative acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(254151..255320) Nocardioides sp. JS614 4596125 YP_921474.1 CDS Noca_0242 NC_008699.1 255363 255929 D PFAM: regulatory protein, TetR; KEGG: tfu:Tfu_0069 putative transcriptional regulator; regulatory protein TetR 255363..255929 Nocardioides sp. JS614 4596126 YP_921475.1 CDS Noca_0243 NC_008699.1 255984 256661 D TIGRFAM: NADPH-dependent F420 reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; KEGG: tfu:Tfu_0970 NADPH-dependent F420 reductase; reduced coenzyme F420:NADP oxidoreductase 255984..256661 Nocardioides sp. JS614 4596127 YP_921476.1 CDS Noca_0244 NC_008699.1 256882 257550 D hypothetical protein 256882..257550 Nocardioides sp. JS614 4596128 YP_921477.1 CDS Noca_0245 NC_008699.1 257634 258317 R PFAM: transferase hexapeptide repeat containing protein; KEGG: sma:SAV7039 sugar acetyltransferase; hexapaptide repeat-containing transferase complement(257634..258317) Nocardioides sp. JS614 4596129 YP_921478.1 CDS Noca_0246 NC_008699.1 258374 258877 D KEGG: sco:SCO0502 hypothetical protein; hypothetical protein 258374..258877 Nocardioides sp. JS614 4596130 YP_921479.1 CDS Noca_0247 NC_008699.1 259106 260992 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: sth:STH843 two-component sensor histidine kinase; ATPase domain-containing protein complement(259106..260992) Nocardioides sp. JS614 4596131 YP_921480.1 CDS Noca_0248 NC_008699.1 260989 261486 R PFAM: Cupin 2, conserved barrel domain protein; cupin 2 domain-containing protein complement(260989..261486) Nocardioides sp. JS614 4596132 YP_921481.1 CDS Noca_0249 NC_008699.1 261623 262567 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO6360 ABC transporter ATP-binding protein; ABC transporter-like protein 261623..262567 Nocardioides sp. JS614 4596133 YP_921482.1 CDS Noca_0250 NC_008699.1 262564 263382 D KEGG: fal:FRAAL2980 putative ABC transporter transmembrane protein; putative ABC transporter transmembrane protein 262564..263382 Nocardioides sp. JS614 4596134 YP_921483.1 CDS Noca_0251 NC_008699.1 263534 266875 D TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V, RecC subunit; KEGG: mtc:MT0659 exodeoxyribonuclease V, gamma subunit; DNA helicase/exodeoxyribonuclease V subunit gamma 263534..266875 Nocardioides sp. JS614 4596135 YP_921484.1 CDS Noca_0252 NC_008699.1 266872 270207 D TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: mmc:Mmcs_0900 exodeoxyribonuclease V, beta subunit; exodeoxyribonuclease V subunit beta 266872..270207 Nocardioides sp. JS614 4596136 YP_921485.1 CDS Noca_0253 NC_008699.1 270200 271954 D KEGG: mpa:MAP4091c exodeoxyribonuclease V alpha chain; TIGRFAM: exodeoxyribonuclease V, alpha subunit; SMART: AAA ATPase; DNA helicase/exodeoxyribonuclease V subunit alpha 270200..271954 Nocardioides sp. JS614 4596137 YP_921486.1 CDS Noca_0254 NC_008699.1 272008 272631 D PFAM: amino acid-binding ACT domain protein; KEGG: pac:PPA1121 hypothetical protein; amino acid-binding ACT domain-containing protein 272008..272631 Nocardioides sp. JS614 4596138 YP_921487.1 CDS Noca_0255 NC_008699.1 272737 274059 R PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV5597 hypothetical protein; major facilitator transporter complement(272737..274059) Nocardioides sp. JS614 4596139 YP_921488.1 CDS Noca_0256 NC_008699.1 274119 275576 R hypothetical protein complement(274119..275576) Nocardioides sp. JS614 4596140 YP_921489.1 CDS Noca_0257 NC_008699.1 275612 276055 R PFAM: Mycobacterium tuberculosis paralogous family 11; KEGG: sma:SAV7465 hypothetical protein; hypothetical protein complement(275612..276055) Nocardioides sp. JS614 4596141 YP_921490.1 CDS Noca_0258 NC_008699.1 276111 277028 D TIGRFAM: naphthoate synthase; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: nfa:nfa51380 putative dihydroxynaphtoic acid synthetase; 1,4-dihydroxy-2-naphthoate synthase 276111..277028 Nocardioides sp. JS614 4596142 YP_921491.1 CDS Noca_0259 NC_008699.1 277105 278469 D KEGG: cef:CE1017 hypothetical protein; hypothetical protein 277105..278469 Nocardioides sp. JS614 4596143 YP_921492.1 CDS pntA NC_008699.1 278976 280460 D forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha 278976..280460 Nocardioides sp. JS614 4596144 YP_921493.1 CDS Noca_0261 NC_008699.1 280460 281875 D PFAM: NAD(P) transhydrogenase, beta subunit; KEGG: mmc:Mmcs_0100 NAD(P) transhydrogenase, beta subunit; NAD(P) transhydrogenase subunit beta 280460..281875 Nocardioides sp. JS614 4596145 YP_921494.1 CDS Noca_0262 NC_008699.1 281930 282394 R hypothetical protein complement(281930..282394) Nocardioides sp. JS614 4596146 YP_921495.1 CDS Noca_0263 NC_008699.1 282485 282982 D hypothetical protein 282485..282982 Nocardioides sp. JS614 4596147 YP_921496.1 CDS Noca_0264 NC_008699.1 283044 284195 D KEGG: cya:CYA_2465 GTP-binding protein; GTP-binding protein 283044..284195 Nocardioides sp. JS614 4596148 YP_921497.1 CDS Noca_0265 NC_008699.1 284215 284913 D PFAM: Silent information regulator protein Sir2; KEGG: sal:Sala_2748 silent information regulator protein Sir2; silent information regulator protein Sir2 284215..284913 Nocardioides sp. JS614 4596149 YP_921498.1 CDS Noca_0266 NC_008699.1 285056 285760 D KEGG: sco:SCO7393 lipoprotein; lipoprotein 285056..285760 Nocardioides sp. JS614 4596150 YP_921499.1 CDS Noca_0267 NC_008699.1 285767 287506 R KEGG: nfa:nfa18050 putative glycosyl hydrolase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; malto-oligosyltrehalose trehalohydrolase complement(285767..287506) Nocardioides sp. JS614 4596151 YP_921500.1 CDS Noca_0268 NC_008699.1 287511 289760 R KEGG: lxx:Lxx02190 malto-oligosyl trehalose synthase; TIGRFAM: malto-oligosyltrehalose synthase; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; maltooligosyl trehalose synthase complement(287511..289760) Nocardioides sp. JS614 4596152 YP_921501.1 CDS Noca_0269 NC_008699.1 289765 291966 R KEGG: mpa:MAP3262c GlgX_2; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; glycogen debranching protein GlgX complement(289765..291966) Nocardioides sp. JS614 4596153 YP_921502.1 CDS Noca_0270 NC_008699.1 292108 293601 D PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro04813 multidrug resistance transporter, MFS superfamily; major facilitator transporter 292108..293601 Nocardioides sp. JS614 4596154 YP_921503.1 CDS Noca_0271 NC_008699.1 293627 294772 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rha:RHA1_ro08138 long-chain-acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 293627..294772 Nocardioides sp. JS614 4596155 YP_921504.1 CDS Noca_0272 NC_008699.1 294848 295579 D PFAM: protein of unknown function DUF125, transmembrane; KEGG: sma:SAV6445 hypothetical protein; hypothetical protein 294848..295579 Nocardioides sp. JS614 4596156 YP_921505.1 CDS Noca_0273 NC_008699.1 295784 296350 D TIGRFAM: 2'-5' RNA ligase; PFAM: 2',5' RNA ligase; KEGG: tfu:Tfu_0243 2',5' RNA ligase; 2'-5' RNA ligase 295784..296350 Nocardioides sp. JS614 4596157 YP_921506.1 CDS Noca_0274 NC_008699.1 296357 297100 R PFAM: RelA/SpoT domain protein; KEGG: lxx:Lxx23800 hypothetical protein; RelA/SpoT domain-containing protein complement(296357..297100) Nocardioides sp. JS614 4596158 YP_921507.1 CDS upp NC_008699.1 297539 298180 R Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase complement(297539..298180) Nocardioides sp. JS614 4596159 YP_921508.1 CDS Noca_0276 NC_008699.1 298300 298785 D KEGG: tfu:Tfu_0025 hypothetical protein; hypothetical protein 298300..298785 Nocardioides sp. JS614 4596160 YP_921509.1 CDS Noca_0277 NC_008699.1 298809 299240 D PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: fal:FRAAL0635 tRNA-specific adenosine deaminase; tRNA-adenosine deaminase 298809..299240 Nocardioides sp. JS614 4596161 YP_921510.1 CDS Noca_0278 NC_008699.1 299282 299674 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: lxx:Lxx15560 lyase; glyoxalase/bleomycin resistance protein/dioxygenase 299282..299674 Nocardioides sp. JS614 4595988 YP_921511.1 CDS Noca_0279 NC_008699.1 299702 301321 R PFAM: ferredoxin-dependent glutamate synthase; KEGG: mmc:Mmcs_5268 ferredoxin-dependent glutamate synthase; glutamate synthase (ferredoxin) complement(299702..301321) Nocardioides sp. JS614 4595989 YP_921512.1 CDS Noca_0280 NC_008699.1 301391 302623 D PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: nfa:nfa32960 putative L-lactate dehydrogenase; (S)-2-hydroxy-acid oxidase 301391..302623 Nocardioides sp. JS614 4595990 YP_921513.1 CDS Noca_0281 NC_008699.1 302655 303251 D KEGG: rha:RHA1_ro04896 hypothetical protein; hypothetical protein 302655..303251 Nocardioides sp. JS614 4595991 YP_921514.1 CDS Noca_0282 NC_008699.1 303599 304468 D KEGG: sye:Syncc9902_0128 hypothetical protein; hypothetical protein 303599..304468 Nocardioides sp. JS614 4595993 YP_921515.1 CDS Noca_0283 NC_008699.1 304562 304891 D KEGG: rha:RHA1_ro00038 hypothetical protein; hypothetical protein 304562..304891 Nocardioides sp. JS614 4595994 YP_921516.1 CDS Noca_0284 NC_008699.1 304960 305166 R KEGG: fra:Francci3_4502 putative signal-transduction protein with CBS domains; signal-transduction protein complement(304960..305166) Nocardioides sp. JS614 4595995 YP_921517.1 CDS Noca_0285 NC_008699.1 305359 305565 R KEGG: sco:SCO0174 putative DNA-binding protein; putative DNA-binding protein complement(305359..305565) Nocardioides sp. JS614 4595996 YP_921518.1 CDS Noca_0286 NC_008699.1 305919 306359 D hypothetical protein 305919..306359 Nocardioides sp. JS614 4595997 YP_921519.1 CDS Noca_0287 NC_008699.1 306377 306943 D KEGG: mbo:Mb3555c possible siderophore-binding protein; putative siderophore-binding protein 306377..306943 Nocardioides sp. JS614 4595998 YP_921520.1 CDS Noca_0288 NC_008699.1 306940 307707 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 306940..307707 Nocardioides sp. JS614 4595999 YP_921521.1 CDS Noca_0289 NC_008699.1 307692 308072 R hypothetical protein complement(307692..308072) Nocardioides sp. JS614 4596000 YP_921522.1 CDS Noca_0290 NC_008699.1 308206 308595 R hypothetical protein complement(308206..308595) Nocardioides sp. JS614 4596001 YP_921523.1 CDS Noca_0291 NC_008699.1 308745 309644 D PFAM: ATPase associated with various cellular activities, AAA_5; KEGG: fal:FRAAL1932 hypothetical protein; ATPase 308745..309644 Nocardioides sp. JS614 4596002 YP_921524.1 CDS Noca_0292 NC_008699.1 309655 311022 D PFAM: VWA containing CoxE family protein; KEGG: fal:FRAAL1933 hypothetical protein; VWA containing CoxE family protein 309655..311022 Nocardioides sp. JS614 4596003 YP_921525.1 CDS Noca_0293 NC_008699.1 311035 312474 R KEGG: blo:BL1804 hypothetical protein; hypothetical protein complement(311035..312474) Nocardioides sp. JS614 4596004 YP_921526.1 CDS Noca_0294 NC_008699.1 312521 312925 R hypothetical protein complement(312521..312925) Nocardioides sp. JS614 4596005 YP_921527.1 CDS Noca_0295 NC_008699.1 312991 314172 R catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase complement(312991..314172) Nocardioides sp. JS614 4596006 YP_921528.1 CDS Noca_0296 NC_008699.1 314330 315811 R PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: mbo:Mb1848 hypothetical protein; hypothetical protein complement(314330..315811) Nocardioides sp. JS614 4596007 YP_921529.1 CDS Noca_0297 NC_008699.1 316135 316833 D PFAM: Redoxin domain protein; KEGG: fal:FRAAL5492 hypothetical protein; putative thiol:disulfide interchange protein; redoxin domain-containing protein 316135..316833 Nocardioides sp. JS614 4596008 YP_921530.1 CDS Noca_0298 NC_008699.1 316905 318422 D the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter 316905..318422 Nocardioides sp. JS614 4596009 YP_921531.1 CDS Noca_0299 NC_008699.1 318446 318946 R KEGG: pac:PPA2178 hypothetical protein; hypothetical protein complement(318446..318946) Nocardioides sp. JS614 4596010 YP_921532.1 CDS Noca_0300 NC_008699.1 318946 319242 R KEGG: fal:FRAAL0085 hypothetical protein; hypothetical protein complement(318946..319242) Nocardioides sp. JS614 4596011 YP_921533.1 CDS Noca_0301 NC_008699.1 319285 319470 R hypothetical protein complement(319285..319470) Nocardioides sp. JS614 4596012 YP_921534.1 CDS Noca_0302 NC_008699.1 319580 320071 D KEGG: nfa:nfa48960 hypothetical protein; hypothetical protein 319580..320071 Nocardioides sp. JS614 4596013 YP_921535.1 CDS Noca_0303 NC_008699.1 320191 324171 R PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: sco:SCO5734 ATP/GTP binding protein (membrane protein); cell division protein FtsK complement(320191..324171) Nocardioides sp. JS614 4596014 YP_921536.1 CDS Noca_0304 NC_008699.1 324276 325691 D KEGG: ret:RHE_CH02708 hypothetical protein; hypothetical protein 324276..325691 Nocardioides sp. JS614 4596015 YP_921537.1 CDS Noca_0305 NC_008699.1 325817 326134 D hypothetical protein 325817..326134 Nocardioides sp. JS614 4596016 YP_921538.1 CDS Noca_0306 NC_008699.1 326167 326463 D PFAM: protein of unknown function DUF909; KEGG: cgb:cg0672 hypothetical protein; hypothetical protein 326167..326463 Nocardioides sp. JS614 4596017 YP_921539.1 CDS Noca_0307 NC_008699.1 326594 327949 D TIGRFAM: CD9/CD37/CD63 antigen; KEGG: sma:SAV2527 hypothetical protein; hypothetical protein 326594..327949 Nocardioides sp. JS614 4596018 YP_921540.1 CDS Noca_0308 NC_008699.1 327960 329408 D KEGG: fal:FRAAL2961 hypothetical protein; hypothetical protein 327960..329408 Nocardioides sp. JS614 4596019 YP_921541.1 CDS Noca_0309 NC_008699.1 329399 330673 D PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: mmc:Mmcs_0380 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin 329399..330673 Nocardioides sp. JS614 4596020 YP_921542.1 CDS Noca_0310 NC_008699.1 330706 332175 R PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: nfa:pnf1230 putative multicopper oxidase; multicopper oxidase, type 3 complement(330706..332175) Nocardioides sp. JS614 4596021 YP_921543.1 CDS Noca_0312 NC_008699.1 332756 333457 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rha:RHA1_ro11203 response regulator, two-component system; response regulator receiver 332756..333457 Nocardioides sp. JS614 4597946 YP_921544.1 CDS Noca_0313 NC_008699.1 333454 334545 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rha:RHA1_ro11204 histidine kinase; ATPase domain-containing protein 333454..334545 Nocardioides sp. JS614 4597947 YP_921545.1 CDS Noca_0314 NC_008699.1 334652 337108 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: rha:RHA1_ro11210 probable copper-exporting ATPase; heavy metal translocating P-type ATPase 334652..337108 Nocardioides sp. JS614 4597948 YP_921546.1 CDS Noca_0315 NC_008699.1 337121 337762 D PFAM: protein of unknown function DUF305; KEGG: nfa:nfa38100 hypothetical protein; hypothetical protein 337121..337762 Nocardioides sp. JS614 4597949 YP_921547.1 CDS Noca_0316 NC_008699.1 337850 339403 R PFAM: oxidoreductase, molybdopterin binding; KEGG: mpa:MAP2359c hypothetical protein; oxidoreductase complement(337850..339403) Nocardioides sp. JS614 4597950 YP_921548.1 CDS Noca_0317 NC_008699.1 340151 342187 D KEGG: sco:SCO4067 DNA polymerase III subunit gamma; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; DNA polymerase III subunits gamma and tau 340151..342187 Nocardioides sp. JS614 4597953 YP_921549.1 CDS Noca_0318 NC_008699.1 342243 342617 D PFAM: conserved hypothetical protein 103; KEGG: rha:RHA1_ro04210 hypothetical protein; hypothetical protein 342243..342617 Nocardioides sp. JS614 4597954 YP_921550.1 CDS recR NC_008699.1 342619 343218 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 342619..343218 Nocardioides sp. JS614 4597955 YP_921551.1 CDS Noca_0320 NC_008699.1 343211 343804 D KEGG: sma:SAV4558 hypothetical protein; hypothetical protein 343211..343804 Nocardioides sp. JS614 4597956 YP_921552.1 CDS Noca_0321 NC_008699.1 343857 345131 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 343857..345131 Nocardioides sp. JS614 4597957 YP_921553.1 CDS Noca_0322 NC_008699.1 345259 346284 D catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 345259..346284 Nocardioides sp. JS614 4597958 YP_921554.1 CDS Noca_0323 NC_008699.1 346350 347027 R hypothetical protein complement(346350..347027) Nocardioides sp. JS614 4597959 YP_921555.1 CDS Noca_0324 NC_008699.1 347295 348257 R PFAM: metallophosphoesterase; KEGG: mmc:Mmcs_4826 metallophosphoesterase; metallophosphoesterase complement(347295..348257) Nocardioides sp. JS614 4597961 YP_921556.1 CDS Noca_0325 NC_008699.1 348333 348797 D PFAM: GatB/Yqey domain protein; KEGG: tfu:Tfu_0108 hypothetical protein; GatB/Yqey domain-containing protein 348333..348797 Nocardioides sp. JS614 4597962 YP_921557.1 CDS Noca_0326 NC_008699.1 348827 351250 R PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; PASTA domain containing protein; KEGG: tfu:Tfu_0109 PASTA; glycosyl transferase family protein complement(348827..351250) Nocardioides sp. JS614 4597963 YP_921558.1 CDS Noca_0327 NC_008699.1 351448 351759 D PFAM: transcription factor WhiB; KEGG: sco:SCO3579 regulatory protein; transcription factor WhiB 351448..351759 Nocardioides sp. JS614 4597964 YP_921559.1 CDS Noca_0328 NC_008699.1 351885 353093 R PFAM: Anion-transporting ATPase; KEGG: tfu:Tfu_0111 putative ion-transporting ATPase; anion-transporting ATPase complement(351885..353093) Nocardioides sp. JS614 4597965 YP_921560.1 CDS Noca_0329 NC_008699.1 353090 354118 R PFAM: Anion-transporting ATPase; KEGG: sco:SCO3577 ion-transporting ATPase; anion-transporting ATPase complement(353090..354118) Nocardioides sp. JS614 4597966 YP_921561.1 CDS Noca_0330 NC_008699.1 354203 354976 D KEGG: fal:FRAAL3148 succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (succinyl CoA:3-oxoacid CoA-transferase) (OXCT A); TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 354203..354976 Nocardioides sp. JS614 4597967 YP_921562.1 CDS Noca_0331 NC_008699.1 354973 355617 D KEGG: fra:Francci3_2503 3-oxoacid CoA-transferase, subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; butyryl-CoA:acetate CoA transferase 354973..355617 Nocardioides sp. JS614 4597968 YP_921563.1 CDS Noca_0332 NC_008699.1 355713 356549 R PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: lxx:Lxx06230 RNA polymerase, sigma factor; sigma-70 region 4 domain-containing protein complement(355713..356549) Nocardioides sp. JS614 4597969 YP_921564.1 CDS Noca_0333 NC_008699.1 356811 357617 D PFAM: sigma-70 region 4 domain protein; KEGG: lxx:Lxx06230 RNA polymerase, sigma factor; sigma-70 region 4 domain-containing protein 356811..357617 Nocardioides sp. JS614 4597970 YP_921565.1 CDS Noca_0334 NC_008699.1 357823 358725 D TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: lxx:Lxx06230 RNA polymerase, sigma factor; FliA/WhiG family RNA polymerase sigma factor 357823..358725 Nocardioides sp. JS614 4597971 YP_921566.1 CDS Noca_0335 NC_008699.1 358835 358990 D KEGG: fra:Francci3_4281 hypothetical protein; hypothetical protein 358835..358990 Nocardioides sp. JS614 4597972 YP_921567.1 CDS Noca_0336 NC_008699.1 358987 359451 D PFAM: Endoribonuclease L-PSP; KEGG: sco:SCO3575 hypothetical protein; endoribonuclease L-PSP 358987..359451 Nocardioides sp. JS614 4597973 YP_921568.1 CDS Noca_0337 NC_008699.1 359462 360334 D PFAM: NUDIX hydrolase; KEGG: sma:SAV4589 hypothetical protein; NUDIX hydrolase 359462..360334 Nocardioides sp. JS614 4597974 YP_921569.1 CDS Noca_0338 NC_008699.1 360390 361157 D PFAM: beta-lactamase domain protein; KEGG: sco:SCO3572 hydrolase; beta-lactamase domain-containing protein 360390..361157 Nocardioides sp. JS614 4597975 YP_921570.1 CDS Noca_0339 NC_008699.1 361275 361952 R PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: tfu:Tfu_0117 cyclic nucleotide-binding:bacterial regulatory protein, Crp; cyclic nucleotide-binding protein complement(361275..361952) Nocardioides sp. JS614 4597976 YP_921571.1 CDS Noca_0340 NC_008699.1 362084 362815 D KEGG: sma:SAV4593 putative endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; endonuclease III / DNA-(apurinic or apyrimidinic site) lyase 362084..362815 Nocardioides sp. JS614 4597977 YP_921572.1 CDS Noca_0341 NC_008699.1 362812 363423 D PFAM: Redoxin domain protein; KEGG: pac:PPA0224 hypothetical protein; redoxin domain-containing protein 362812..363423 Nocardioides sp. JS614 4597978 YP_921573.1 CDS Noca_0342 NC_008699.1 363420 364139 D PFAM: NUDIX hydrolase; KEGG: sma:SAV4594 hypothetical protein; NUDIX hydrolase 363420..364139 Nocardioides sp. JS614 4597979 YP_921574.1 CDS Noca_0343 NC_008699.1 364136 365311 D PFAM: peptidase S1 and S6, chymotrypsin/Hap; Colicin V production protein; KEGG: fra:Francci3_4292 colicin V production protein; peptidase S1 and S6, chymotrypsin/Hap 364136..365311 Nocardioides sp. JS614 4597980 YP_921575.1 CDS Noca_0344 NC_008699.1 365473 365892 R PFAM: protein of unknown function DUF1469; KEGG: cdi:DIP0309 hypothetical protein; hypothetical protein complement(365473..365892) Nocardioides sp. JS614 4597981 YP_921576.1 CDS Noca_0345 NC_008699.1 365914 367218 R PFAM: Na+/H+ antiporter NhaA; sodium/hydrogen exchanger; KEGG: fra:Francci3_2583 Na+/H+ antiporter NhaA; Na+/H+ antiporter NhaA complement(365914..367218) Nocardioides sp. JS614 4597982 YP_921577.1 CDS Noca_0346 NC_008699.1 367344 369338 R Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase complement(367344..369338) Nocardioides sp. JS614 4597983 YP_921578.1 CDS Noca_0347 NC_008699.1 369471 371075 R TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: sco:SCO1822 putative transmembrane transport protein; SSS family solute/sodium (Na+) symporter complement(369471..371075) Nocardioides sp. JS614 4597984 YP_921579.1 CDS Noca_0348 NC_008699.1 371072 371434 R PFAM: protein of unknown function DUF485; KEGG: sma:SAV6453 hypothetical protein; hypothetical protein complement(371072..371434) Nocardioides sp. JS614 4597985 YP_921580.1 CDS Noca_0349 NC_008699.1 371696 373204 D PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr2806 nitrite extrusion protein; major facilitator transporter 371696..373204 Nocardioides sp. JS614 4595643 YP_921581.1 CDS Noca_0350 NC_008699.1 373204 375246 D PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: fra:Francci3_0863 molybdopterin oxidoreductase; assimilatory nitrate reductase (NADH) subunit alpha apoprotein 373204..375246 Nocardioides sp. JS614 4595644 YP_921582.1 CDS Noca_0351 NC_008699.1 375404 376786 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: mmc:Mmcs_3231 nitrite reductase (NAD(P)H) large subunit, NirB; assimilatory nitrate reductase (NADH) subunit beta 375404..376786 Nocardioides sp. JS614 4595645 YP_921583.1 CDS Noca_0352 NC_008699.1 376783 379299 D TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: fal:FRAAL1355 nitrite reductase, large subunit, nucleotide-binding; assimilatory nitrite reductase (NAD(P)H) large subunit 376783..379299 Nocardioides sp. JS614 4595646 YP_921584.1 CDS Noca_0353 NC_008699.1 379296 379673 D TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: fra:Francci3_0795 nitrite reductase (NAD(P)H) large subunit, NirD; assimilatory nitrite reductase (NAD(P)H) small subunit 379296..379673 Nocardioides sp. JS614 4595647 YP_921585.1 CDS Noca_0354 NC_008699.1 379670 380788 D catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; bifunctional uroporphyrinogen-III synthetase/response regulator domain-containing protein 379670..380788 Nocardioides sp. JS614 4595648 YP_921586.1 CDS Noca_0355 NC_008699.1 380814 382331 R PFAM: Na+/solute symporter; KEGG: sma:SAV7117 transmembrane transport protein; Na+/solute symporter complement(380814..382331) Nocardioides sp. JS614 4595649 YP_921587.1 CDS Noca_0356 NC_008699.1 382328 382705 R KEGG: rha:RHA1_ro05042 hypothetical protein; hypothetical protein complement(382328..382705) Nocardioides sp. JS614 4595650 YP_921588.1 CDS Noca_0357 NC_008699.1 382702 383451 R PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: sma:SAV7115 regulatory protein; response regulator receiver complement(382702..383451) Nocardioides sp. JS614 4595651 YP_921589.1 CDS Noca_0358 NC_008699.1 383448 384572 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase internal region; KEGG: sma:SAV7118 putative two-component system sensor kinase; histidine kinase complement(383448..384572) Nocardioides sp. JS614 4595652 YP_921590.1 CDS Noca_0359 NC_008699.1 384577 385362 R PFAM: carbonic anhydrase; KEGG: mag:amb0581 carbonic anhydrase; carbonate dehydratase complement(384577..385362) Nocardioides sp. JS614 4595653 YP_921591.1 CDS Noca_0360 NC_008699.1 385393 386220 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mpa:MAP3459 putative methyltransferase; type 11 methyltransferase complement(385393..386220) Nocardioides sp. JS614 4595654 YP_921592.1 CDS Noca_0362 NC_008699.1 387475 388344 R TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; KEGG: sco:SCO3558 morphological differentiation-associated protein; HAD family hydrolase complement(387475..388344) Nocardioides sp. JS614 4595656 YP_921593.1 CDS Noca_0363 NC_008699.1 388395 389441 D KEGG: sco:SCO3557 septum site determining protein; septum site determining protein 388395..389441 Nocardioides sp. JS614 4595657 YP_921594.1 CDS Noca_0364 NC_008699.1 389438 390601 D PFAM: type II secretion system protein E; KEGG: sco:SCO3556 putative secretory protein; type II secretion system protein E 389438..390601 Nocardioides sp. JS614 4597750 YP_921595.1 CDS Noca_0365 NC_008699.1 390598 391374 D PFAM: type II secretion system protein; KEGG: sco:SCO3555 integral membrane protein; type II secretion system protein 390598..391374 Nocardioides sp. JS614 4597751 YP_921596.1 CDS Noca_0366 NC_008699.1 391371 392093 D PFAM: type II secretion system protein; KEGG: tfu:Tfu_0126 putative integral membrane protein; type II secretion system protein 391371..392093 Nocardioides sp. JS614 4597752 YP_921597.1 CDS Noca_0367 NC_008699.1 392651 393028 D KEGG: sco:SCO3552 hypothetical protein; hypothetical protein 392651..393028 Nocardioides sp. JS614 4597753 YP_921598.1 CDS Noca_0368 NC_008699.1 393025 393390 D KEGG: fal:FRAAL6570 hypothetical protein; putative TonB Box domain; hypothetical protein 393025..393390 Nocardioides sp. JS614 4597754 YP_921599.1 CDS Noca_0369 NC_008699.1 393420 393731 R hypothetical protein complement(393420..393731) Nocardioides sp. JS614 4597755 YP_921600.1 CDS Noca_0370 NC_008699.1 393742 396078 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sco:SCO3550 putative helicase; DEAD/DEAH box helicase complement(393742..396078) Nocardioides sp. JS614 4597756 YP_921601.1 CDS Noca_0371 NC_008699.1 396317 396655 D TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: fal:FRAAL6574 anti-sigma-B factor antagonist (anti-anti-sigma-B factor); anti-anti-sigma factor 396317..396655 Nocardioides sp. JS614 4597757 YP_921602.1 CDS hppA NC_008699.1 396899 399277 D pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase 396899..399277 Nocardioides sp. JS614 4597758 YP_921603.1 CDS Noca_0373 NC_008699.1 399342 400832 R KEGG: cch:Cag_1235 hypothetical protein; hypothetical protein complement(399342..400832) Nocardioides sp. JS614 4597759 YP_921604.1 CDS Noca_0374 NC_008699.1 401017 402477 D PFAM: methyltransferase small; Methyltransferase type 12; KEGG: sma:SAV4618 rRNA or tRNA methyltransferase; methyltransferase small 401017..402477 Nocardioides sp. JS614 4597760 YP_921605.1 CDS Noca_0375 NC_008699.1 402495 403265 R hypothetical protein complement(402495..403265) Nocardioides sp. JS614 4597761 YP_921606.1 CDS Noca_0376 NC_008699.1 403358 404068 R hypothetical protein complement(403358..404068) Nocardioides sp. JS614 4597762 YP_921607.1 CDS Noca_0377 NC_008699.1 404073 404597 R PFAM: regulatory protein, LuxR; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sma:SAV6340 RNA polymerase ECF-subfamily sigma factor; sigma-70 factor complement(404073..404597) Nocardioides sp. JS614 4597763 YP_921608.1 CDS Noca_0378 NC_008699.1 404767 407484 D KEGG: sma:SAV4621 putative DNA topoisomerase I; TIGRFAM: DNA topoisomerase I; PFAM: TOPRIM domain protein; DNA topoisomerase, type IA, central domain protein; SMART: DNA topoisomerase I, ATP-binding; DNA topoisomerase I, DNA-binding; Toprim sub domain protein; DNA topoisomerase I 404767..407484 Nocardioides sp. JS614 4597764 YP_921609.1 CDS Noca_0379 NC_008699.1 407542 408570 D PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sco:SCO6349 transcriptional regulator; LacI family transcriptional regulator 407542..408570 Nocardioides sp. JS614 4597765 YP_921610.1 CDS Noca_0380 NC_008699.1 408864 410567 D catalyzes the phosphorylation of ribulose to ribulose 5-phosphate; ribulokinase 408864..410567 Nocardioides sp. JS614 4597766 YP_921611.1 CDS Noca_0381 NC_008699.1 410564 411280 D catalyzes the formation of D-xylulose 5-phosphate from L-ribulose 5-phosphate; L-ribulose-5-phosphate 4-epimerase 410564..411280 Nocardioides sp. JS614 4597767 YP_921612.1 CDS Noca_0382 NC_008699.1 411277 412785 D catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism; L-arabinose isomerase 411277..412785 Nocardioides sp. JS614 4597768 YP_921613.1 CDS Noca_0383 NC_008699.1 412854 413939 D KEGG: ret:RHE_CH03165 xylose ABC transporter, substrate-binding protein; xylose ABC transporter, substrate-binding protein 412854..413939 Nocardioides sp. JS614 4597769 YP_921614.1 CDS Noca_0384 NC_008699.1 414015 415544 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lxx:Lxx00320 multiple sugar (arabinose, xylose, galactose, glucose, fucose) putative porter; ABC transporter-like protein 414015..415544 Nocardioides sp. JS614 4597770 YP_921615.1 CDS Noca_0385 NC_008699.1 415548 416837 D PFAM: inner-membrane translocator; KEGG: sco:SCO2406 putative sugar transport permease; inner-membrane translocator 415548..416837 Nocardioides sp. JS614 4597771 YP_921616.1 CDS Noca_0386 NC_008699.1 417242 417910 D PFAM: thymidylate kinase; KEGG: pac:PPA0243 putative thymidylate kinase; thymidylate kinase 417242..417910 Nocardioides sp. JS614 4597772 YP_921617.1 CDS Noca_0387 NC_008699.1 417907 419064 D TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: pac:PPA0244 DNA polymerase III delta' subunit; DNA polymerase III subunit delta' 417907..419064 Nocardioides sp. JS614 4597773 YP_921618.1 CDS Noca_0388 NC_008699.1 419061 420626 D PFAM: alpha/beta hydrolase fold; TAP domain protein; KEGG: sco:SCO3540 proteinase (secreted protein); TAP domain-containing protein 419061..420626 Nocardioides sp. JS614 4597774 YP_921619.1 CDS Noca_0389 NC_008699.1 420751 422100 R PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: nfa:nfa30780 putative oxidoreductase; amine oxidase complement(420751..422100) Nocardioides sp. JS614 4597775 YP_921620.1 CDS Noca_0390 NC_008699.1 422097 423287 R PFAM: peptidase U34, dipeptidase; KEGG: pae:PA4677 hypothetical protein; peptidase U34, dipeptidase complement(422097..423287) Nocardioides sp. JS614 4597776 YP_921621.1 CDS Noca_0391 NC_008699.1 423351 423755 R PFAM: Limonene-1,2-epoxide hydrolase; KEGG: nfa:nfa48080 hypothetical protein; limonene-1,2-epoxide hydrolase complement(423351..423755) Nocardioides sp. JS614 4597777 YP_921622.1 CDS Noca_0392 NC_008699.1 423752 424702 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: csa:Csal_1417 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(423752..424702) Nocardioides sp. JS614 4597778 YP_921623.1 CDS Noca_0393 NC_008699.1 424809 424991 D hypothetical protein 424809..424991 Nocardioides sp. JS614 4597779 YP_921624.1 CDS Noca_0394 NC_008699.1 425549 426130 D hypothetical protein 425549..426130 Nocardioides sp. JS614 4597781 YP_921625.1 CDS Noca_0395 NC_008699.1 426148 426810 D hypothetical protein 426148..426810 Nocardioides sp. JS614 4597782 YP_921626.1 CDS Noca_0396 NC_008699.1 427097 427459 D PFAM: DGPFAETKE family protein; KEGG: sma:SAV1196 hypothetical protein; DGPFAETKE family protein 427097..427459 Nocardioides sp. JS614 4597783 YP_921627.1 CDS Noca_0397 NC_008699.1 427653 428579 D KEGG: rha:RHA1_ro05190 hypothetical protein; hypothetical protein 427653..428579 Nocardioides sp. JS614 4597784 YP_921628.1 CDS Noca_0398 NC_008699.1 428636 429280 R PFAM: class II aldolase/adducin family protein; KEGG: cpf:CPF_1051 L-fuculose phosphate aldolase; class II aldolase/adducin family protein complement(428636..429280) Nocardioides sp. JS614 4597785 YP_921629.1 CDS Noca_0399 NC_008699.1 429287 430168 R PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: cch:Cag_1641 hypothetical protein; aldolase complement(429287..430168) Nocardioides sp. JS614 4597786 YP_921630.1 CDS Noca_0400 NC_008699.1 430197 430586 R PFAM: Cupin 2, conserved barrel domain protein; KEGG: btk:BT9727_2719 conserved hypothetical protein, possible polyketide synthesis domain protein; cupin complement(430197..430586) Nocardioides sp. JS614 4597787 YP_921631.1 CDS Noca_0401 NC_008699.1 430624 432582 R PFAM: class II aldolase/adducin family protein; short-chain dehydrogenase/reductase SDR; KEGG: syn:slr1208 short-chain alcohol dehydrogenase family; short chain dehydrogenase complement(430624..432582) Nocardioides sp. JS614 4597713 YP_921632.1 CDS Noca_0402 NC_008699.1 432727 433446 R PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: tte:TTE0461 Transcriptional regulator; GntR family transcriptional regulator complement(432727..433446) Nocardioides sp. JS614 4597714 YP_921633.1 CDS Noca_0403 NC_008699.1 433600 434634 D KEGG: fal:FRAAL1411 methylthioribose-1-phosphate isomerase (MTR-1-P isomerase); TIGRFAM: eIF-2B alpha/beta/delta-related uncharacterized proteins; PFAM: initiation factor 2B related; translation initiation factor 2B subunit I 433600..434634 Nocardioides sp. JS614 4597715 YP_921634.1 CDS Noca_0404 NC_008699.1 434682 435788 D KEGG: ret:RHE_PB00122 probable sugar ABC transporter, substrate-binding protein; putative sugar ABC transporter, substrate-binding protein 434682..435788 Nocardioides sp. JS614 4597716 YP_921635.1 CDS Noca_0405 NC_008699.1 435846 437378 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: psp:PSPPH_2279 ABC transporter protein, ATP binding component; ABC transporter-like protein 435846..437378 Nocardioides sp. JS614 4597717 YP_921636.1 CDS Noca_0406 NC_008699.1 437378 438463 D PFAM: inner-membrane translocator; KEGG: mlo:mlr7287 ABC transporter, permease protein; inner-membrane translocator 437378..438463 Nocardioides sp. JS614 4597718 YP_921637.1 CDS mtnK NC_008699.1 438509 439738 D phosphorylates methylthioribose to form methylthioribose-1-phosphate; involved in methionine salvage pathway; methylthioribose kinase 438509..439738 Nocardioides sp. JS614 4597719 YP_921638.1 CDS Noca_0408 NC_008699.1 439817 442225 R PFAM: Thrombospondin type 3 repeat; KEGG: ade:Adeh_3645 outer membrane protein, OmpA/MotB family; thrombospondin type 3 repeat-containing protein complement(439817..442225) Nocardioides sp. JS614 4597720 YP_921639.1 CDS Noca_0409 NC_008699.1 442294 443040 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: rxy:Rxyl_0706 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(442294..443040) Nocardioides sp. JS614 4597721 YP_921640.1 CDS Noca_0410 NC_008699.1 443037 443549 R KEGG: xom:XOO_4078 hypothetical protein; hypothetical protein complement(443037..443549) Nocardioides sp. JS614 4597722 YP_921641.1 CDS Noca_0411 NC_008699.1 443569 444246 R PFAM: Vitamin K epoxide reductase; KEGG: blo:BL0088 narrowly conserved hypothetical transmembrane protein; vitamin K epoxide reductase complement(443569..444246) Nocardioides sp. JS614 4597723 YP_921642.1 CDS Noca_0412 NC_008699.1 444243 445073 R PFAM: DSBA oxidoreductase; KEGG: nfa:nfa52230 hypothetical protein; DSBA oxidoreductase complement(444243..445073) Nocardioides sp. JS614 4597724 YP_921643.1 CDS Noca_0413 NC_008699.1 445255 445623 R hypothetical protein complement(445255..445623) Nocardioides sp. JS614 4597725 YP_921644.1 CDS Noca_0414 NC_008699.1 445679 447970 D PFAM: peptidase S15; X-Pro dipeptidyl-peptidase C-terminal domain protein; KEGG: nfa:nfa43000 putative esterase; peptidase S15 445679..447970 Nocardioides sp. JS614 4597726 YP_921645.1 CDS Noca_0415 NC_008699.1 448056 448667 D PFAM: protein of unknown function DUF161; KEGG: eca:ECA3669 hypothetical protein; hypothetical protein 448056..448667 Nocardioides sp. JS614 4597727 YP_921646.1 CDS Noca_0417 NC_008699.1 449692 450126 R KEGG: sma:SAV6755 hypothetical protein; hypothetical protein complement(449692..450126) Nocardioides sp. JS614 4597729 YP_921647.1 CDS Noca_0418 NC_008699.1 450212 450643 D PFAM: ribonuclease H; KEGG: eli:ELI_01550 ribonuclease H; ribonuclease H 450212..450643 Nocardioides sp. JS614 4597730 YP_921648.1 CDS Noca_0419 NC_008699.1 450723 451823 D PFAM: Endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 450723..451823 Nocardioides sp. JS614 4597731 YP_921649.1 CDS Noca_0420 NC_008699.1 451816 452163 R PFAM: helix-turn-helix, HxlR type; KEGG: sma:SAV4875 transcriptional regulator; HxlR type helix-turn-helix domain-containing protein complement(451816..452163) Nocardioides sp. JS614 4597732 YP_921650.1 CDS Noca_0421 NC_008699.1 452287 453144 D PFAM: NmrA family protein; KEGG: lxx:Lxx16700 hypothetical protein; NmrA family protein 452287..453144 Nocardioides sp. JS614 4597733 YP_921651.1 CDS Noca_0422 NC_008699.1 453119 454018 R TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: fra:Francci3_0236 modification methylase, HemK family; HemK family modification methylase complement(453119..454018) Nocardioides sp. JS614 4597734 YP_921652.1 CDS Noca_0423 NC_008699.1 454035 454358 D KEGG: fal:FRAAL1608 hypothetical protein; putative membrane protein; hypothetical protein 454035..454358 Nocardioides sp. JS614 4597735 YP_921653.1 CDS Noca_0424 NC_008699.1 454355 454762 D KEGG: tfu:Tfu_0355 putative integral membrane protein; putative integral membrane protein 454355..454762 Nocardioides sp. JS614 4597736 YP_921654.1 CDS Noca_0425 NC_008699.1 454784 455962 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: rha:RHA1_ro03045 probable NADH-dependent flavin oxidoreductase; NADH:flavin oxidoreductase 454784..455962 Nocardioides sp. JS614 4597737 YP_921655.1 CDS Noca_0426 NC_008699.1 456145 457266 D PFAM: dihydrodipicolinate reductase; KEGG: rha:RHA1_ro02530 hypothetical protein; dihydrodipicolinate reductase 456145..457266 Nocardioides sp. JS614 4597738 YP_921656.1 CDS Noca_0427 NC_008699.1 457322 458134 D PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: mmc:Mmcs_4362 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase 457322..458134 Nocardioides sp. JS614 4597739 YP_921657.1 CDS Noca_0428 NC_008699.1 458144 459244 D PFAM: beta-lactamase domain protein; KEGG: rha:RHA1_ro04761 hypothetical protein; beta-lactamase domain-containing protein 458144..459244 Nocardioides sp. JS614 4597740 YP_921658.1 CDS Noca_0429 NC_008699.1 459234 459677 R PFAM: GCN5-related N-acetyltransferase; KEGG: rha:RHA1_ro06613 hypothetical protein; N-acetyltransferase GCN5 complement(459234..459677) Nocardioides sp. JS614 4597741 YP_921659.1 CDS Noca_0430 NC_008699.1 459674 460591 R PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: eli:ELI_09720 esterase; alpha/beta hydrolase domain-containing protein complement(459674..460591) Nocardioides sp. JS614 4597742 YP_921660.1 CDS Noca_0431 NC_008699.1 460688 461275 D TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: sma:SAV1635 hypothetical protein; alkylhydroperoxidase 460688..461275 Nocardioides sp. JS614 4597743 YP_921661.1 CDS Noca_0432 NC_008699.1 461272 462150 D PFAM: DNA gyrase C-terminal repeat, beta-propeller; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sco:SCO2742 putative sigma factor; sigma-70 region 2 domain-containing protein 461272..462150 Nocardioides sp. JS614 4597744 YP_921662.1 CDS Noca_0433 NC_008699.1 462413 463492 D TIGRFAM: ABC transporter, periplasmic binding protein, thiB subfamily; PFAM: extracellular solute-binding protein, family 1; KEGG: sco:SCO5646 putative solute binding lipoprotein; ABC transporter periplasmic-binding protein 462413..463492 Nocardioides sp. JS614 4597745 YP_921663.1 CDS Noca_0434 NC_008699.1 463526 465160 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO5647 ABC transporter integral membrane protein; binding-protein-dependent transport systems inner membrane component 463526..465160 Nocardioides sp. JS614 4597746 YP_921664.1 CDS Noca_0435 NC_008699.1 465160 466158 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO5648 ABC transporter ATP binding protein; ABC transporter-like protein 465160..466158 Nocardioides sp. JS614 4597747 YP_921665.1 CDS Noca_0436 NC_008699.1 466180 467241 D KEGG: pca:Pcar_1759 hypothetical protein; hypothetical protein 466180..467241 Nocardioides sp. JS614 4597748 YP_921666.1 CDS Noca_0437 NC_008699.1 467338 469311 D PFAM: acyl-CoA oxidase domain protein; acyl-CoA dehydrogenase domain protein; KEGG: tfu:Tfu_2239 hypothetical protein; acyl-CoA oxidase domain-containing protein 467338..469311 Nocardioides sp. JS614 4597749 YP_921667.1 CDS Noca_0438 NC_008699.1 469421 469912 R PFAM: Inorganic pyrophosphatase; KEGG: sma:SAV4661 putative inorganic pyrophosphatase; inorganic diphosphatase complement(469421..469912) Nocardioides sp. JS614 4597337 YP_921668.1 CDS Noca_0439 NC_008699.1 470027 471409 D TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13, D-Ala-D-Ala carboxypeptidase C; KEGG: sma:SAV4662 D-alanyl-D-alanine carboxypeptidase; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 470027..471409 Nocardioides sp. JS614 4597338 YP_921669.1 CDS Noca_0440 NC_008699.1 471452 472498 D KEGG: sma:SAV4663 hypothetical protein; hypothetical protein 471452..472498 Nocardioides sp. JS614 4597339 YP_921670.1 CDS Noca_0441 NC_008699.1 472519 473484 D TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: tfu:Tfu_2897 helix-turn-helix, fis-type; tRNA(Ile)-lysidine synthetase 472519..473484 Nocardioides sp. JS614 4597340 YP_921671.1 CDS Noca_0442 NC_008699.1 473580 474293 D hypothetical protein 473580..474293 Nocardioides sp. JS614 4597341 YP_921672.1 CDS Noca_0443 NC_008699.1 474309 474860 D KEGG: sco:SCO3405 putative hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase 474309..474860 Nocardioides sp. JS614 4597342 YP_921673.1 CDS Noca_0444 NC_008699.1 475120 477165 D KEGG: sma:SAV4666 putative cell division protein FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; Mername-AA223 peptidase 475120..477165 Nocardioides sp. JS614 4597343 YP_921674.1 CDS folE NC_008699.1 477305 477922 D involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 477305..477922 Nocardioides sp. JS614 4597344 YP_921675.1 CDS Noca_0446 NC_008699.1 477930 478790 D KEGG: sma:SAV4672 putative dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS; dihydropteroate synthase 477930..478790 Nocardioides sp. JS614 4597345 YP_921676.1 CDS Noca_0447 NC_008699.1 478787 479173 D TIGRFAM: dihydroneopterin aldolase; KEGG: tfu:Tfu_2891 dihydroneopterin aldolase family:dihydroneopterin aldolase; dihydroneopterin aldolase 478787..479173 Nocardioides sp. JS614 4597346 YP_921677.1 CDS Noca_0448 NC_008699.1 479166 479735 D KEGG: sco:SCO3401 putative hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 479166..479735 Nocardioides sp. JS614 4597347 YP_921678.1 CDS Noca_0449 NC_008699.1 479743 480234 D KEGG: sco:SCO3402 secreted protein; hypothetical protein 479743..480234 Nocardioides sp. JS614 4597348 YP_921679.1 CDS Noca_0450 NC_008699.1 480244 480849 D KEGG: sco:SCP2.27c putative multidomain membrane protein; hypothetical protein 480244..480849 Nocardioides sp. JS614 4597349 YP_921680.1 CDS Noca_0451 NC_008699.1 480965 482113 D PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 480965..482113 Nocardioides sp. JS614 4597350 YP_921681.1 CDS Noca_0452 NC_008699.1 482221 483255 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV7409 putative ABC transporter ATP-binding protein; ABC transporter-like protein complement(482221..483255) Nocardioides sp. JS614 4597351 YP_921682.1 CDS Noca_0453 NC_008699.1 483259 483966 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV7406 putative ABC transporter permease protein; binding-protein-dependent transport system inner membrane protein 483259..483966 Nocardioides sp. JS614 4597352 YP_921683.1 CDS Noca_0454 NC_008699.1 483963 484736 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fal:FRAAL6728 putative ABC transporter permease protein; binding-protein-dependent transport system inner membrane protein 483963..484736 Nocardioides sp. JS614 4597353 YP_921684.1 CDS Noca_0455 NC_008699.1 484783 485739 D PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: fal:FRAAL6729 putative amino acid ABC transporter amino acid-binding protein; glycine betaine ABC transporter substrate-binding protein 484783..485739 Nocardioides sp. JS614 4597354 YP_921685.1 CDS Noca_0456 NC_008699.1 485732 486844 R PFAM: glycosyl transferase, family 2; KEGG: sco:SCO2590 glycosyltransferase; glycosyl transferase family protein complement(485732..486844) Nocardioides sp. JS614 4597355 YP_921686.1 CDS Noca_0457 NC_008699.1 486894 487982 D KEGG: rxy:Rxyl_3097 hypothetical protein; hypothetical protein 486894..487982 Nocardioides sp. JS614 4597356 YP_921687.1 CDS Noca_0458 NC_008699.1 487979 488893 D KEGG: rxy:Rxyl_3098 hypothetical protein; hypothetical protein 487979..488893 Nocardioides sp. JS614 4597357 YP_921688.1 CDS Noca_0459 NC_008699.1 489233 490051 D KEGG: sco:SCO3384 hypothetical protein; hypothetical protein 489233..490051 Nocardioides sp. JS614 4597358 YP_921689.1 CDS Noca_0460 NC_008699.1 490048 491052 D KEGG: nfa:nfa4060 putative pantothenate synthetase; TIGRFAM: pantoate--beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase; pantothenate synthetase 490048..491052 Nocardioides sp. JS614 4597359 YP_921690.1 CDS Noca_0461 NC_008699.1 491064 491471 D KEGG: nfa:nfa4070 putative aspartate 1-decarboxylase; TIGRFAM: aspartate 1-decarboxylase; PFAM: aspartate decarboxylase; L-aspartate 1-decarboxylase 491064..491471 Nocardioides sp. JS614 4597360 YP_921691.1 CDS Noca_0462 NC_008699.1 491481 493208 D catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 491481..493208 Nocardioides sp. JS614 4597361 YP_921692.1 CDS Noca_0463 NC_008699.1 493205 494107 D KEGG: fra:Francci3_4378 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase 493205..494107 Nocardioides sp. JS614 4597362 YP_921693.1 CDS Noca_0464 NC_008699.1 494111 494884 D TIGRFAM: putative transcriptional activator, Baf family; PFAM: Bordetella pertussis Bvg accessory factor; KEGG: sma:SAV4690 putative Bordetella pertussis Bvg accessory factor family; pantothenate kinase 494111..494884 Nocardioides sp. JS614 4597363 YP_921694.1 CDS Noca_0465 NC_008699.1 495060 495386 D KEGG: pac:PPA0277 hypothetical protein; hypothetical protein 495060..495386 Nocardioides sp. JS614 4597364 YP_921695.1 CDS Noca_0466 NC_008699.1 495691 498276 D PFAM: UvrB/UvrC protein; AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: sma:SAV4697 putative ATP-dependent Clp protease; ATPase 495691..498276 Nocardioides sp. JS614 4597365 YP_921696.1 CDS Noca_0467 NC_008699.1 498338 499204 R PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: sco:SCO3355 putative adenine glycosylase; HhH-GPD family protein complement(498338..499204) Nocardioides sp. JS614 4597366 YP_921697.1 CDS Noca_0468 NC_008699.1 499269 500069 D KEGG: tfu:Tfu_2874 hypothetical protein; hypothetical protein 499269..500069 Nocardioides sp. JS614 4597367 YP_921698.1 CDS Noca_0469 NC_008699.1 500207 501289 R non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair; DNA integrity scanning protein DisA complement(500207..501289) Nocardioides sp. JS614 4597368 YP_921699.1 CDS Noca_0470 NC_008699.1 501369 502787 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(501369..502787) Nocardioides sp. JS614 4597369 YP_921700.1 CDS Noca_0471 NC_008699.1 503013 504032 D PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sth:STH770 LacI family transcriptional repressor; LacI family transcriptional regulator 503013..504032 Nocardioides sp. JS614 4597370 YP_921701.1 CDS Noca_0472 NC_008699.1 504157 504912 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rha:RHA1_ro06583 hypothetical protein; type 11 methyltransferase complement(504157..504912) Nocardioides sp. JS614 4597371 YP_921702.1 CDS Noca_0473 NC_008699.1 504920 505558 R KEGG: pac:PPA0314 hypothetical protein; hypothetical protein complement(504920..505558) Nocardioides sp. JS614 4597372 YP_921703.1 CDS Noca_0474 NC_008699.1 505707 506477 R KEGG: sco:SCO3349 conserved hypothetical protein; hypothetical protein complement(505707..506477) Nocardioides sp. JS614 4597373 YP_921704.1 CDS Noca_0475 NC_008699.1 506536 507471 D PFAM: Ppx/GppA phosphatase; KEGG: sco:SCO3348 putative DNA-binding protein; Ppx/GppA phosphatase 506536..507471 Nocardioides sp. JS614 4597374 YP_921705.1 CDS Noca_0476 NC_008699.1 507474 508262 D PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sco:SCO3347 conserved hypothetical protein; xylose isomerase domain-containing protein 507474..508262 Nocardioides sp. JS614 4597375 YP_921706.1 CDS Noca_0477 NC_008699.1 508259 508867 D PFAM: regulatory protein, TetR; KEGG: rha:RHA1_ro00946 transcriptional regulator, TetR family; TetR family transcriptional regulator 508259..508867 Nocardioides sp. JS614 4597376 YP_921707.1 CDS Noca_0478 NC_008699.1 508897 509646 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nfa:nfa19890 putative ABC transporter ATP-binding protein; ABC transporter-like protein 508897..509646 Nocardioides sp. JS614 4597377 YP_921708.1 CDS Noca_0479 NC_008699.1 509714 510451 D PFAM: ABC-2 type transporter; KEGG: rha:RHA1_ro00945 ABC transporter, permease component; ABC transporter 509714..510451 Nocardioides sp. JS614 4597378 YP_921709.1 CDS Noca_0480 NC_008699.1 510531 511481 D PFAM: Proline dehydrogenase; KEGG: tfu:Tfu_0434 proline dehydrogenase; L-proline dehydrogenase 510531..511481 Nocardioides sp. JS614 4597379 YP_921710.1 CDS Noca_0481 NC_008699.1 511592 512395 D KEGG: sma:SAV4724 putative pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; pyrroline-5-carboxylate reductase 511592..512395 Nocardioides sp. JS614 4597380 YP_921711.1 CDS Noca_0482 NC_008699.1 512432 513400 R KEGG: sma:SAV4725 putative tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase, class Ib; tryptophanyl-tRNA synthetase complement(512432..513400) Nocardioides sp. JS614 4597381 YP_921712.1 CDS Noca_0483 NC_008699.1 513595 514779 D PFAM: histone deacetylase superfamily; KEGG: tfu:Tfu_2707 putative acetoin utilization protein; histone deacetylase superfamily protein 513595..514779 Nocardioides sp. JS614 4597382 YP_921713.1 CDS Noca_0484 NC_008699.1 514976 515179 D TIGRFAM: DNA binding domain, excisionase family; PFAM: Prophage CP4-57 regulatory; KEGG: cef:CE0431 hypothetical protein; DNA binding domain-containing protein 514976..515179 Nocardioides sp. JS614 4597383 YP_921714.1 CDS Noca_0485 NC_008699.1 515312 515413 D PFAM: Protein of unknown function DUF1713; KEGG: pac:PPA0320 hypothetical protein; hypothetical protein 515312..515413 Nocardioides sp. JS614 4597384 YP_921715.1 CDS Noca_0486 NC_008699.1 515440 516519 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: fra:Francci3_0479 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 515440..516519 Nocardioides sp. JS614 4597385 YP_921716.1 CDS Noca_0487 NC_008699.1 516512 517639 D PFAM: phospholipid/glycerol acyltransferase; KEGG: fal:FRAAL0978 putative acyltransferase; phospholipid/glycerol acyltransferase 516512..517639 Nocardioides sp. JS614 4597386 YP_921717.1 CDS Noca_0488 NC_008699.1 517793 518947 R KEGG: sma:SAV4734 hypothetical protein; hypothetical protein complement(517793..518947) Nocardioides sp. JS614 4597387 YP_921718.1 CDS Noca_0489 NC_008699.1 519078 519878 R PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sma:SAV4735 RNA polymerase ECF-subfamily sigma factor; sigma-70 region 2 domain-containing protein complement(519078..519878) Nocardioides sp. JS614 4597388 YP_921719.1 CDS Noca_0490 NC_008699.1 520088 520981 R TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sma:SAV4736 3-phosphoserine phosphatase; HAD family hydrolase complement(520088..520981) Nocardioides sp. JS614 4597389 YP_921720.1 CDS Noca_0491 NC_008699.1 521035 522582 D PFAM: AMP-dependent synthetase and ligase; KEGG: tth:TTC1065 long-chain-fatty-acid-CoA ligase; AMP-dependent synthetase and ligase 521035..522582 Nocardioides sp. JS614 4597390 YP_921721.1 CDS Noca_0492 NC_008699.1 522579 522824 D PFAM: glutaredoxin; glutaredoxin 2; KEGG: sma:SAV4737 redoxin; glutaredoxin 522579..522824 Nocardioides sp. JS614 4597391 YP_921722.1 CDS Noca_0493 NC_008699.1 523011 523688 D modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex 523011..523688 Nocardioides sp. JS614 4597392 YP_921723.1 CDS Noca_0494 NC_008699.1 523685 524977 D PFAM: glutamyl-tRNA reductase; Shikimate/quinate 5-dehydrogenase; KEGG: rha:RHA1_ro02053 glutamyl-tRNA reductase; glutamyl-tRNA reductase 523685..524977 Nocardioides sp. JS614 4597393 YP_921724.1 CDS Noca_0495 NC_008699.1 524974 525918 D KEGG: rha:RHA1_ro02052 hydroxymethylbilane synthase; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase; porphobilinogen deaminase 524974..525918 Nocardioides sp. JS614 4597394 YP_921725.1 CDS Noca_0496 NC_008699.1 526010 527668 D PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: sco:SCO3317 putative uroporphyrin-III C-methyltransferase/uroporphyrinogen-III synthase; uroporphyrinogen-III synthase / uroporphyrinogen-III C-methyltransferase 526010..527668 Nocardioides sp. JS614 4597395 YP_921726.1 CDS Noca_0497 NC_008699.1 527693 528694 D catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 527693..528694 Nocardioides sp. JS614 4597396 YP_921727.1 CDS Noca_0498 NC_008699.1 528934 530103 R KEGG: sma:SAV6229 secreted protein; secreted protein complement(528934..530103) Nocardioides sp. JS614 4597397 YP_921728.1 CDS Noca_0499 NC_008699.1 530333 531670 D TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: sma:SAV4795 putative glutamate-1-semialdehyde 2,1-aminotransferase; glutamate-1-semialdehyde 2,1-aminomutase 530333..531670 Nocardioides sp. JS614 4597398 YP_921729.1 CDS Noca_0500 NC_008699.1 531683 532363 D PFAM: Phosphoglycerate mutase; KEGG: sma:SAV4796 phosphoglycerate mutase; phosphoglycerate mutase 531683..532363 Nocardioides sp. JS614 4597399 YP_921730.1 CDS Noca_0501 NC_008699.1 532363 532965 D PFAM: Redoxin domain protein; KEGG: pac:PPA0325 hypothetical protein; redoxin domain-containing protein 532363..532965 Nocardioides sp. JS614 4597400 YP_921731.1 CDS Noca_0502 NC_008699.1 532958 533719 D PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: sco:SCO4473 putative cytochrome biogenesis related protein; cytochrome c biogenesis protein, transmembrane region 532958..533719 Nocardioides sp. JS614 4597401 YP_921732.1 CDS Noca_0503 NC_008699.1 533802 535400 D PFAM: ResB family protein; KEGG: sco:SCO4474 putative integral membrane protein; ResB family protein 533802..535400 Nocardioides sp. JS614 4597402 YP_921733.1 CDS Noca_0504 NC_008699.1 535397 536422 D PFAM: cytochrome c assembly protein; KEGG: pac:PPA0328 putative cytochrome c biogenesis protein; cytochrome c assembly protein 535397..536422 Nocardioides sp. JS614 4597403 YP_921734.1 CDS Noca_0505 NC_008699.1 536673 536867 R hypothetical protein complement(536673..536867) Nocardioides sp. JS614 4597404 YP_921735.1 CDS Noca_0506 NC_008699.1 536911 537180 D hypothetical protein 536911..537180 Nocardioides sp. JS614 4597405 YP_921736.1 CDS Noca_0507 NC_008699.1 537409 538302 R catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase complement(537409..538302) Nocardioides sp. JS614 4597406 YP_921737.1 CDS Noca_0508 NC_008699.1 538338 539339 D PFAM: AMP-dependent synthetase and ligase; KEGG: tfu:Tfu_1408 putative ortho-succinylbenzoate-CoA synthetase; AMP-dependent synthetase and ligase 538338..539339 Nocardioides sp. JS614 4597407 YP_921738.1 CDS Noca_0509 NC_008699.1 539330 540292 D catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; O-succinylbenzoate synthase 539330..540292 Nocardioides sp. JS614 4597408 YP_921739.1 CDS Noca_0510 NC_008699.1 540289 541902 D KEGG: pac:PPA0903 menaquinone biosynthesis protein; 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase 540289..541902 Nocardioides sp. JS614 4597409 YP_921740.1 CDS Noca_0511 NC_008699.1 541936 543810 D TIGRFAM: Na+/H+ antiporter; PFAM: sodium/hydrogen exchanger; KEGG: mmc:Mmcs_0521 Na+/H+ antiporter; Na+/H+ antiporter 541936..543810 Nocardioides sp. JS614 4597410 YP_921741.1 CDS Noca_0512 NC_008699.1 543868 545064 R PFAM: cytochrome P450; KEGG: mmc:Mmcs_3241 cytochrome P450; cytochrome P450 complement(543868..545064) Nocardioides sp. JS614 4597411 YP_921742.1 CDS Noca_0513 NC_008699.1 545122 545628 R PFAM: GCN5-related N-acetyltransferase; KEGG: nfa:nfa41970 putative enoyl-CoA hydratase/isomerase family protein; N-acetyltransferase GCN5 complement(545122..545628) Nocardioides sp. JS614 4596433 YP_921743.1 CDS Noca_0514 NC_008699.1 545625 546233 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: sma:SAV7466 hypothetical protein; lysine exporter protein LysE/YggA complement(545625..546233) Nocardioides sp. JS614 4596434 YP_921744.1 CDS Noca_0515 NC_008699.1 546289 546924 D PFAM: beta-lactamase domain protein; KEGG: sma:SAV1967 hypothetical protein; beta-lactamase domain-containing protein 546289..546924 Nocardioides sp. JS614 4596435 YP_921745.1 CDS Noca_0516 NC_008699.1 547044 548330 R TIGRFAM: isochorismate synthases; PFAM: Anthranilate synthase component I and chorismate binding protein; KEGG: tfu:Tfu_1413 isochorismate synthase; isochorismate synthase complement(547044..548330) Nocardioides sp. JS614 4596436 YP_921746.1 CDS Noca_0517 NC_008699.1 548444 549013 D hypothetical protein 548444..549013 Nocardioides sp. JS614 4596437 YP_921747.1 CDS Noca_0518 NC_008699.1 549035 549964 R PFAM: Peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein; KEGG: sma:SAV3383 lipoprotein; peptidoglycan binding domain-containing protein complement(549035..549964) Nocardioides sp. JS614 4596438 YP_921748.1 CDS ubiE NC_008699.1 550120 550809 D Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 550120..550809 Nocardioides sp. JS614 4596439 YP_921749.1 CDS Noca_0520 NC_008699.1 551159 551518 D PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; KEGG: sma:SAV4837 putative NADH dehydrogenase chain A; NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 551159..551518 Nocardioides sp. JS614 4596440 YP_921750.1 CDS Noca_0521 NC_008699.1 551532 552086 D The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 551532..552086 Nocardioides sp. JS614 4596441 YP_921751.1 CDS Noca_0522 NC_008699.1 552083 552835 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit C 552083..552835 Nocardioides sp. JS614 4596442 YP_921752.1 CDS Noca_0523 NC_008699.1 552835 554175 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D 552835..554175 Nocardioides sp. JS614 4596443 YP_921753.1 CDS Noca_0524 NC_008699.1 554172 554963 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E 554172..554963 Nocardioides sp. JS614 4596444 YP_921754.1 CDS Noca_0525 NC_008699.1 554960 556282 D KEGG: rha:RHA1_ro05914 probable NADH dehydrogenase subunit F; TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; NADH-quinone oxidoreductase subunit F 554960..556282 Nocardioides sp. JS614 4596445 YP_921755.1 CDS Noca_0526 NC_008699.1 556279 558714 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G 556279..558714 Nocardioides sp. JS614 4596446 YP_921756.1 CDS Noca_0527 NC_008699.1 558711 560060 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H 558711..560060 Nocardioides sp. JS614 4596447 YP_921757.1 CDS Noca_0528 NC_008699.1 560060 560650 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 560060..560650 Nocardioides sp. JS614 4596448 YP_921758.1 CDS Noca_0529 NC_008699.1 560647 561474 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J 560647..561474 Nocardioides sp. JS614 4596449 YP_921759.1 CDS Noca_0530 NC_008699.1 561471 561770 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K 561471..561770 Nocardioides sp. JS614 4596450 YP_921760.1 CDS Noca_0531 NC_008699.1 561784 563715 D Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L 561784..563715 Nocardioides sp. JS614 4596451 YP_921761.1 CDS Noca_0532 NC_008699.1 563712 565241 D KEGG: rha:RHA1_ro05921 probable NADH dehydrogenase subunit M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase, chain M 563712..565241 Nocardioides sp. JS614 4596199 YP_921762.1 CDS Noca_0533 NC_008699.1 565241 566842 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N 565241..566842 Nocardioides sp. JS614 4596200 YP_921763.1 CDS Noca_0534 NC_008699.1 566839 567843 D PFAM: Polyprenyl synthetase; KEGG: sco:SCO4583 putative polyprenyl diphosphate synthase; trans-hexaprenyltranstransferase 566839..567843 Nocardioides sp. JS614 4596201 YP_921764.1 CDS Noca_0535 NC_008699.1 567946 569427 R TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6, transmembrane; KEGG: sma:SAV4873 RarD protein; transporter DMT superfamily protein complement(567946..569427) Nocardioides sp. JS614 4596202 YP_921765.1 CDS Noca_0536 NC_008699.1 569507 570622 R catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; 2-oxoglutarate ferredoxin oxidoreductase subunit beta complement(569507..570622) Nocardioides sp. JS614 4596203 YP_921766.1 CDS Noca_0537 NC_008699.1 570619 572601 R PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: tfu:Tfu_2674 2-oxoglutarate ferredoxin oxidoreductase, alpha subunit; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein complement(570619..572601) Nocardioides sp. JS614 4596204 YP_921767.1 CDS Noca_0538 NC_008699.1 572921 573958 D TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: mmc:Mmcs_3482 thiosulphate-binding protein; sulfate ABC transporter, periplasmic sulfate-binding protein 572921..573958 Nocardioides sp. JS614 4596205 YP_921768.1 CDS Noca_0539 NC_008699.1 573958 574839 D TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mbo:Mb2421c probable sulfate-transport integral membrane protein ABC transporter CysT; sulfate ABC transporter, inner membrane subunit CysT 573958..574839 Nocardioides sp. JS614 4596206 YP_921769.1 CDS Noca_0540 NC_008699.1 574832 575653 D TIGRFAM: sulfate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mtc:MT2469 sulfate ABC transporter, permease protein; sulfate ABC transporter permease 574832..575653 Nocardioides sp. JS614 4596207 YP_921770.1 CDS Noca_0541 NC_008699.1 575669 576688 D KEGG: mpa:MAP2210c sulfate transport system ATP-binding protein; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; sulfate ABC transporter ATPase 575669..576688 Nocardioides sp. JS614 4596208 YP_921771.1 CDS Noca_0542 NC_008699.1 576702 577691 R PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: ccr:CC1928 inosine-uridine preferring nucleoside hydrolase; inosine/uridine-preferring nucleoside hydrolase complement(576702..577691) Nocardioides sp. JS614 4596209 YP_921772.1 CDS Noca_0543 NC_008699.1 577710 578474 R PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: rxy:Rxyl_1898 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(577710..578474) Nocardioides sp. JS614 4596210 YP_921773.1 CDS Noca_0544 NC_008699.1 578474 579169 R KEGG: syn:sll1776 deoxyribose-phosphate aldolase; TIGRFAM: deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; deoxyribose-phosphate aldolase complement(578474..579169) Nocardioides sp. JS614 4596211 YP_921774.1 CDS Noca_0545 NC_008699.1 579216 580130 R PFAM: PfkB domain protein; KEGG: rxy:Rxyl_1888 PfkB; ribokinase-like domain-containing protein complement(579216..580130) Nocardioides sp. JS614 4596212 YP_921775.1 CDS Noca_0546 NC_008699.1 580692 581231 D hypothetical protein 580692..581231 Nocardioides sp. JS614 4596213 YP_921776.1 CDS Noca_0547 NC_008699.1 581228 581422 D hypothetical protein 581228..581422 Nocardioides sp. JS614 4596214 YP_921777.1 CDS Noca_0548 NC_008699.1 581823 582059 D hypothetical protein 581823..582059 Nocardioides sp. JS614 4596215 YP_921778.1 CDS Noca_0549 NC_008699.1 582212 582445 R hypothetical protein complement(582212..582445) Nocardioides sp. JS614 4596216 YP_921779.1 CDS Noca_0550 NC_008699.1 582461 585370 R TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: nfa:nfa15380 putative phage tail; TP901 family phage tail tape measure protein complement(582461..585370) Nocardioides sp. JS614 4596217 YP_921780.1 CDS Noca_0551 NC_008699.1 585456 585692 R hypothetical protein complement(585456..585692) Nocardioides sp. JS614 4596218 YP_921781.1 CDS Noca_0552 NC_008699.1 585699 586034 R hypothetical protein complement(585699..586034) Nocardioides sp. JS614 4596219 YP_921782.1 CDS Noca_0553 NC_008699.1 586031 586432 R TIGRFAM: DNA binding domain, excisionase family; DNA binding domain-containing protein complement(586031..586432) Nocardioides sp. JS614 4596220 YP_921783.1 CDS Noca_0554 NC_008699.1 586429 587172 R hypothetical protein complement(586429..587172) Nocardioides sp. JS614 4596221 YP_921784.1 CDS Noca_0555 NC_008699.1 587200 588729 R KEGG: lxx:Lxx24020 phage-related terminase; hypothetical protein complement(587200..588729) Nocardioides sp. JS614 4596222 YP_921785.1 CDS Noca_0556 NC_008699.1 588726 589163 R KEGG: lxx:Lxx24010 hypothetical protein; hypothetical protein complement(588726..589163) Nocardioides sp. JS614 4596223 YP_921786.1 CDS Noca_0557 NC_008699.1 589544 589915 R hypothetical protein complement(589544..589915) Nocardioides sp. JS614 4596224 YP_921787.1 CDS Noca_0558 NC_008699.1 590431 591093 R hypothetical protein complement(590431..591093) Nocardioides sp. JS614 4596225 YP_921788.1 CDS Noca_0559 NC_008699.1 591094 591324 R hypothetical protein complement(591094..591324) Nocardioides sp. JS614 4596226 YP_921789.1 CDS Noca_0560 NC_008699.1 591317 591718 R hypothetical protein complement(591317..591718) Nocardioides sp. JS614 4596227 YP_921790.1 CDS Noca_0561 NC_008699.1 591718 591897 R TIGRFAM: DNA binding domain, excisionase family; KEGG: mmc:Mmcs_4829 hypothetical protein; DNA binding domain-containing protein complement(591718..591897) Nocardioides sp. JS614 4596228 YP_921791.1 CDS Noca_0562 NC_008699.1 591983 592798 D hypothetical protein 591983..592798 Nocardioides sp. JS614 4596229 YP_921792.1 CDS Noca_0563 NC_008699.1 592798 593883 D PFAM: phage integrase family protein; KEGG: mmc:Mmcs_4828 phage integrase; phage integrase family protein 592798..593883 Nocardioides sp. JS614 4596230 YP_921793.1 CDS Noca_0564 NC_008699.1 594467 594958 R putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein complement(594467..594958) Nocardioides sp. JS614 4596231 YP_921794.1 CDS Noca_0565 NC_008699.1 595341 596720 R PFAM: phage integrase family protein; KEGG: sco:SCO5349 integrase; phage integrase family protein complement(595341..596720) Nocardioides sp. JS614 4596233 YP_921795.1 CDS Noca_0566 NC_008699.1 596887 597114 R KEGG: sco:SCO5348 excisionase; hypothetical protein complement(596887..597114) Nocardioides sp. JS614 4596234 YP_921796.1 CDS Noca_0567 NC_008699.1 597415 598725 R hypothetical protein complement(597415..598725) Nocardioides sp. JS614 4596235 YP_921797.1 CDS Noca_0568 NC_008699.1 598725 599024 R hypothetical protein complement(598725..599024) Nocardioides sp. JS614 4596236 YP_921798.1 CDS Noca_0569 NC_008699.1 599141 599677 R hypothetical protein complement(599141..599677) Nocardioides sp. JS614 4596162 YP_921799.1 CDS Noca_0570 NC_008699.1 599689 600102 R PFAM: single-strand binding protein/Primosomal replication protein n; single-strand binding protein/primosomal replication protein n complement(599689..600102) Nocardioides sp. JS614 4596163 YP_921800.1 CDS Noca_0571 NC_008699.1 600243 600554 D PFAM: transposase IS3/IS911 family protein; KEGG: cef:CE2618 putative transposase; transposase IS3/IS911 family protein 600243..600554 Nocardioides sp. JS614 4596164 YP_921801.1 CDS Noca_0573 NC_008699.1 601264 602703 D PFAM: Integrase, catalytic region; KEGG: mmc:Mmcs_5505 integrase, catalytic region; integrase catalytic subunit 601264..602703 Nocardioides sp. JS614 4596166 YP_921802.1 CDS Noca_0574 NC_008699.1 603183 604172 D together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 603183..604172 Nocardioides sp. JS614 4596167 YP_921803.1 CDS Noca_0575 NC_008699.1 604897 605787 R PFAM: oxidoreductase domain protein; NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: mxa:MXAN_2154 NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase complement(604897..605787) Nocardioides sp. JS614 4596168 YP_921804.1 CDS Noca_0576 NC_008699.1 606498 607802 D PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; protein of unknown function DUF1486; KEGG: nfa:nfa29880 hypothetical protein; hypothetical protein 606498..607802 Nocardioides sp. JS614 4596169 YP_921805.1 CDS Noca_0578 NC_008699.1 610474 610818 D PFAM: protein of unknown function DUF336; KEGG: mlo:msr9402 hypothetical protein; hypothetical protein 610474..610818 Nocardioides sp. JS614 4596171 YP_921806.1 CDS Noca_0579 NC_008699.1 611044 613143 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; KEGG: sme:SMa0257 probable methylamine; NADH:flavin oxidoreductase complement(611044..613143) Nocardioides sp. JS614 4596172 YP_921807.1 CDS Noca_0581 NC_008699.1 614126 615679 D PFAM: Integrase, catalytic region; KEGG: rha:RHA1_ro06977 possible transposase; integrase catalytic subunit 614126..615679 Nocardioides sp. JS614 4596174 YP_921808.1 CDS Noca_0582 NC_008699.1 615676 616455 D PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: rha:RHA1_ro06982 possible insertion sequence ATP-binding protein; IstB ATP binding domain-containing protein 615676..616455 Nocardioides sp. JS614 4596175 YP_921809.1 CDS Noca_0585 NC_008699.1 618228 618641 R KEGG: mxa:MXAN_4930 amine oxidase, flavin-containing; monoamine oxidase-like complement(618228..618641) Nocardioides sp. JS614 4596178 YP_921810.1 CDS Noca_0586 NC_008699.1 618937 620220 D PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: aor:AO090020000701 monoamine oxidase Pfam: FAD_binding_3 HI0933_like FAD_binding_2 GIDA DAO Amino_oxidase; amine oxidase 618937..620220 Nocardioides sp. JS614 4596179 YP_921811.1 CDS Noca_0587 NC_008699.1 620470 620763 D hypothetical protein 620470..620763 Nocardioides sp. JS614 4596180 YP_921812.1 CDS Noca_0588 NC_008699.1 621282 622454 D KEGG: fal:FRAAL2528 hypothetical protein; sugar ABC transporter periplasmic component-like protein 621282..622454 Nocardioides sp. JS614 4596181 YP_921813.1 CDS Noca_0589 NC_008699.1 622577 623803 D KEGG: rha:RHA1_ro03774 hypothetical protein; hypothetical protein 622577..623803 Nocardioides sp. JS614 4596182 YP_921814.1 CDS Noca_0590 NC_008699.1 623979 624278 D PFAM: Stress responsive alpha-beta barrel domain protein; KEGG: mmp:MMP0887 hypothetical protein; stress responsive alpha-beta barrel domain-containing protein 623979..624278 Nocardioides sp. JS614 4596183 YP_921815.1 CDS Noca_0591 NC_008699.1 624278 625204 D PFAM: cyclase family protein; KEGG: pfl:PFL_4035 hypothetical polyketide cyclase; cyclase family protein 624278..625204 Nocardioides sp. JS614 4596184 YP_921816.1 CDS Noca_0592 NC_008699.1 625236 626420 D PFAM: monooxygenase, FAD-binding; KEGG: bur:Bcep18194_A4962 hypothetical protein; hypothetical protein 625236..626420 Nocardioides sp. JS614 4596185 YP_921817.1 CDS Noca_0593 NC_008699.1 626505 627239 D PFAM: carbon monoxide dehydrogenase subunit G; KEGG: mmc:Mmcs_4601 carbon monoxide dehydrogenase subunit G; carbon monoxide dehydrogenase subunit G 626505..627239 Nocardioides sp. JS614 4596186 YP_921818.1 CDS Noca_0594 NC_008699.1 627274 628125 D PFAM: molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: rpb:RPB_3113 molybdopterin dehydrogenase, FAD-binding; molybdopterin dehydrogenase 627274..628125 Nocardioides sp. JS614 4596187 YP_921819.1 CDS Noca_0595 NC_008699.1 628127 628633 D PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rxy:Rxyl_1873 (2Fe-2S)-binding protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein 628127..628633 Nocardioides sp. JS614 4596188 YP_921820.1 CDS Noca_0596 NC_008699.1 628630 631035 D PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: rxy:Rxyl_1872 carbon-monoxide dehydrogenase; xanthine dehydrogenase, molybdenum binding subunit apoprotein 628630..631035 Nocardioides sp. JS614 4596189 YP_921821.1 CDS Noca_0597 NC_008699.1 631032 631874 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: sma:SAV4383 hydrolase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 631032..631874 Nocardioides sp. JS614 4596190 YP_921822.1 CDS Noca_0600 NC_008699.1 634392 635381 R PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: eba:p2A227 putative integrase; phage integrase family protein complement(634392..635381) Nocardioides sp. JS614 4596193 YP_921823.1 CDS Noca_0601 NC_008699.1 635378 636376 R PFAM: phage integrase family protein; KEGG: sus:Acid_3311 phage integrase family protein; phage integrase family protein complement(635378..636376) Nocardioides sp. JS614 4596194 YP_921824.1 CDS Noca_0602 NC_008699.1 636373 637611 R PFAM: phage integrase family protein; KEGG: eba:p2A229 putative integrase; phage integrase family protein complement(636373..637611) Nocardioides sp. JS614 4596195 YP_921825.1 CDS Noca_0603 NC_008699.1 637847 638242 D KEGG: mmc:Mmcs_3178 integrase, catalytic region; integrase catalytic subunit 637847..638242 Nocardioides sp. JS614 4596196 YP_921826.1 CDS Noca_0604 NC_008699.1 638469 639644 R KEGG: fal:FRAAL2528 hypothetical protein; sugar ABC transporter periplasmic component-like protein complement(638469..639644) Nocardioides sp. JS614 4596197 YP_921827.1 CDS Noca_0606 NC_008699.1 641063 641557 R PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: gka:GKP18 carbon monoxide dehydrogenase small chain; 2Fe-2S iron-sulfur cluster binding domain-containing protein complement(641063..641557) Nocardioides sp. JS614 4596023 YP_921828.1 CDS Noca_0607 NC_008699.1 641554 642441 R PFAM: molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: rpb:RPB_3113 molybdopterin dehydrogenase, FAD-binding; molybdopterin dehydrogenase complement(641554..642441) Nocardioides sp. JS614 4596024 YP_921829.1 CDS Noca_0608 NC_008699.1 642623 643873 R KEGG: rha:RHA1_ro03774 hypothetical protein; CdaR family transcriptional regulator complement(642623..643873) Nocardioides sp. JS614 4596025 YP_921830.1 CDS Noca_0609 NC_008699.1 643944 644687 R hypothetical protein complement(643944..644687) Nocardioides sp. JS614 4596026 YP_921831.1 CDS Noca_0610 NC_008699.1 644690 645766 R PFAM: inner-membrane translocator; KEGG: fal:FRAAL2526 putative ribose transport system permease protein; putative membrane protein; inner-membrane translocator complement(644690..645766) Nocardioides sp. JS614 4596027 YP_921832.1 CDS Noca_0611 NC_008699.1 645763 647367 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fal:FRAAL2527 putative ATP-binding protein of sugar ABC transporter; ABC transporter-like protein complement(645763..647367) Nocardioides sp. JS614 4596028 YP_921833.1 CDS Noca_0612 NC_008699.1 647541 649913 R PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: rxy:Rxyl_1874 carbon-monoxide dehydrogenase; xanthine dehydrogenase, molybdenum binding subunit apoprotein complement(647541..649913) Nocardioides sp. JS614 4596029 YP_921834.1 CDS Noca_0613 NC_008699.1 650063 651214 D PFAM: protein of unknown function DUF1100, hydrolase family protein; KEGG: ppu:PP_3195 hypothetical protein; hypothetical protein 650063..651214 Nocardioides sp. JS614 4596030 YP_921835.1 CDS Noca_0614 NC_008699.1 651308 651658 D PFAM: protein of unknown function DUF861, cupin_3; Cupin 2, conserved barrel domain protein; KEGG: sma:SAV6269 hypothetical protein; hypothetical protein 651308..651658 Nocardioides sp. JS614 4596031 YP_921836.1 CDS Noca_0616 NC_008699.1 654191 654460 D hypothetical protein 654191..654460 Nocardioides sp. JS614 4596033 YP_921837.1 CDS Noca_0618 NC_008699.1 654931 657102 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sme:SMa0257 probable methylamine; NADH:flavin oxidoreductase complement(654931..657102) Nocardioides sp. JS614 4596035 YP_921838.1 CDS Noca_0619 NC_008699.1 657099 658139 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: nfa:nfa30730 hypothetical protein; hypothetical protein complement(657099..658139) Nocardioides sp. JS614 4596036 YP_921839.1 CDS Noca_0620 NC_008699.1 658209 659132 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sma:SAV4790 LysR-family transcriptional regulator; substrate-binding protein LysR 658209..659132 Nocardioides sp. JS614 4596037 YP_921840.1 CDS Noca_0621 NC_008699.1 659396 659788 D PFAM: protein of unknown function DUF861, cupin_3; KEGG: mlo:mll2946 hypothetical protein; hypothetical protein 659396..659788 Nocardioides sp. JS614 4596038 YP_921841.1 CDS Noca_0622 NC_008699.1 660057 661448 D PFAM: FAD dependent oxidoreductase; KEGG: fal:FRAAL6023 hypothetical protein; putative signal peptide; FAD dependent oxidoreductase 660057..661448 Nocardioides sp. JS614 4596039 YP_921842.1 CDS Noca_0627 NC_008699.1 663671 664000 D PFAM: small multidrug resistance protein; KEGG: nfa:nfa19760 putative multi-drug efflux transporter; small multidrug resistance protein 663671..664000 Nocardioides sp. JS614 4596044 YP_921843.1 CDS Noca_0630 NC_008699.1 665558 666643 D PFAM: transposase, mutator type; KEGG: mbo:Mb3664c putative transposase; transposase, mutator type 665558..666643 Nocardioides sp. JS614 4596047 YP_921844.1 CDS Noca_0631 NC_008699.1 666640 666786 D KEGG: mbo:Mb3664c putative transposase; putative transposase 666640..666786 Nocardioides sp. JS614 4596048 YP_921845.1 CDS Noca_0632 NC_008699.1 666989 667831 R PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rha:RHA1_ro04979 probable ATPase, MoxR family; ATPase complement(666989..667831) Nocardioides sp. JS614 4596049 YP_921846.1 CDS Noca_0633 NC_008699.1 667825 669018 R PFAM: protein of unknown function DUF182; KEGG: mmc:Mmcs_0488 protein of unknown function DUF182; hypothetical protein complement(667825..669018) Nocardioides sp. JS614 4596050 YP_921847.1 CDS Noca_0634 NC_008699.1 669040 670470 R PFAM: FAD dependent oxidoreductase; KEGG: bam:Bamb_3196 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(669040..670470) Nocardioides sp. JS614 4596051 YP_921848.1 CDS Noca_0635 NC_008699.1 670808 672442 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: nfa:nfa50890 putative ferredoxin reductase; 4Fe-4S ferredoxin 670808..672442 Nocardioides sp. JS614 4596052 YP_921849.1 CDS Noca_0636 NC_008699.1 672606 673238 D PFAM: NADPH-dependent FMN reductase; flavodoxin/nitric oxide synthase; KEGG: mpa:MAP3035 putative Trp repressor binding protein; flavodoxin/nitric oxide synthase 672606..673238 Nocardioides sp. JS614 4596053 YP_921850.1 CDS Noca_0637 NC_008699.1 674153 675613 R PFAM: purine catabolism PurC domain protein; KEGG: mmc:Mmcs_3284 purine catabolism PurC-like protein; purine catabolism PurC domain-containing protein complement(674153..675613) Nocardioides sp. JS614 4596054 YP_921851.1 CDS Noca_0638 NC_008699.1 675751 676617 R KEGG: fra:Francci3_4407 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS; dihydropteroate synthase complement(675751..676617) Nocardioides sp. JS614 4596055 YP_921852.1 CDS Noca_0639 NC_008699.1 676625 677590 R PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: sco:SCO1081 putative electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha complement(676625..677590) Nocardioides sp. JS614 4596056 YP_921853.1 CDS Noca_0640 NC_008699.1 677602 678402 R PFAM: electron transfer flavoprotein beta-subunit; KEGG: sco:SCO1082 putative electron transfer flavoprotein, beta subunit; electron transfer flavoprotein subunit beta complement(677602..678402) Nocardioides sp. JS614 4596057 YP_921854.1 CDS Noca_0641 NC_008699.1 678430 679320 R PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: tfu:Tfu_2571 methenyltetrahydrofolate cyclohydrolase; methenyltetrahydrofolate cyclohydrolase complement(678430..679320) Nocardioides sp. JS614 4596058 YP_921855.1 CDS Noca_0642 NC_008699.1 679574 682021 D PFAM: FAD dependent oxidoreductase; glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein, C-terminal barrel; KEGG: jan:Jann_2849 FAD dependent oxidoreductase; FAD dependent oxidoreductase 679574..682021 Nocardioides sp. JS614 4596059 YP_921856.1 CDS Noca_0643 NC_008699.1 682018 682872 D TIGRFAM: formyltetrahydrofolate deformylase; PFAM: formyl transferase domain protein; amino acid-binding ACT domain protein; KEGG: bbr:BB4045 putative formyltetrahydrofolate deformylase; formyltetrahydrofolate deformylase 682018..682872 Nocardioides sp. JS614 4596060 YP_921857.1 CDS Noca_0644 NC_008699.1 683272 684141 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: mmc:Mmcs_3012 transcriptional regulator, LysR family; regulatory protein LysR complement(683272..684141) Nocardioides sp. JS614 4596061 YP_921858.1 CDS Noca_0645 NC_008699.1 684225 685583 D TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; KEGG: mmc:Mmcs_2274 4-aminobutyrate aminotransferase; 4-aminobutyrate aminotransferase 684225..685583 Nocardioides sp. JS614 4596062 YP_921859.1 CDS Noca_0646 NC_008699.1 685580 686959 D PFAM: aldehyde dehydrogenase; KEGG: mlo:mll5719 succinate-semialdehyde dehydrogenase; succinate semialdehyde dehydrogenase 685580..686959 Nocardioides sp. JS614 4599509 YP_921860.1 CDS Noca_0647 NC_008699.1 687414 688772 R PFAM: FAD dependent oxidoreductase; KEGG: rxy:Rxyl_1818 D-amino-acid dehydrogenase; D-amino-acid dehydrogenase complement(687414..688772) Nocardioides sp. JS614 4599510 YP_921861.1 CDS Noca_0648 NC_008699.1 688778 689056 R KEGG: sco:SCO6164 putative DnaK suppressor protein; putative DnaK suppressor protein complement(688778..689056) Nocardioides sp. JS614 4599511 YP_921862.1 CDS Noca_0649 NC_008699.1 689100 689555 R KEGG: pol:Bpro_0100 transcriptional regulators, TraR/DksA family; hypothetical protein complement(689100..689555) Nocardioides sp. JS614 4599512 YP_921863.1 CDS Noca_0650 NC_008699.1 689659 690030 R hypothetical protein complement(689659..690030) Nocardioides sp. JS614 4599513 YP_921864.1 CDS Noca_0651 NC_008699.1 690319 691260 R PFAM: metallophosphoesterase; KEGG: nfa:nfa48690 putative phosphoesterase; metallophosphoesterase complement(690319..691260) Nocardioides sp. JS614 4599514 YP_921865.1 CDS Noca_0652 NC_008699.1 691270 691401 R hypothetical protein complement(691270..691401) Nocardioides sp. JS614 4599515 YP_921866.1 CDS Noca_0653 NC_008699.1 691599 693053 R PFAM: monooxygenase, FAD-binding; KEGG: rha:RHA1_ro03540 pentachlorophenol monooxygenase; monooxygenase complement(691599..693053) Nocardioides sp. JS614 4599516 YP_921867.1 CDS Noca_0654 NC_008699.1 693164 694732 D KEGG: sma:SAV1313 hypothetical protein; hypothetical protein 693164..694732 Nocardioides sp. JS614 4599517 YP_921868.1 CDS Noca_0655 NC_008699.1 694654 695829 R KEGG: rha:RHA1_ro02309 probable fumarylacetoacetase; TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate hydrolase complement(694654..695829) Nocardioides sp. JS614 4599518 YP_921869.1 CDS Noca_0656 NC_008699.1 695826 696725 R KEGG: rha:RHA1_ro02310 hypothetical protein; hypothetical protein complement(695826..696725) Nocardioides sp. JS614 4599519 YP_921870.1 CDS Noca_0657 NC_008699.1 696778 697992 D PFAM: homogentisate 1,2-dioxygenase; Cupin 2, conserved barrel domain protein; KEGG: rha:RHA1_ro02311 homogentisate 1,2-dioxygenase; homogentisate 1,2-dioxygenase 696778..697992 Nocardioides sp. JS614 4599520 YP_921871.1 CDS Noca_0658 NC_008699.1 698009 698875 D PFAM: aldo/keto reductase; KEGG: tma:TM1297 oxidoreductase, putative; aldo/keto reductase 698009..698875 Nocardioides sp. JS614 4599521 YP_921872.1 CDS Noca_0659 NC_008699.1 698914 700026 R PFAM: glycosyl transferase, group 1; KEGG: pac:PPA1824 glycosyl transferase; group 1 glycosyl transferase complement(698914..700026) Nocardioides sp. JS614 4599522 YP_921873.1 CDS Noca_0660 NC_008699.1 700093 700413 D KEGG: lxx:Lxx05505 hypothetical protein; hypothetical protein 700093..700413 Nocardioides sp. JS614 4599523 YP_921874.1 CDS Noca_0661 NC_008699.1 700424 701272 R KEGG: mmc:Mmcs_4148 hypothetical protein; hypothetical protein complement(700424..701272) Nocardioides sp. JS614 4599524 YP_921875.1 CDS Noca_0662 NC_008699.1 701441 703822 D TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: rha:RHA1_ro03039 formate dehydrogenase; oxidoreductase alpha (molybdopterin) subunit 701441..703822 Nocardioides sp. JS614 4599525 YP_921876.1 CDS Noca_0663 NC_008699.1 703882 704937 D PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: sco:SCO0468 hypothetical protein; pirin domain-containing protein 703882..704937 Nocardioides sp. JS614 4599526 YP_921877.1 CDS Noca_0664 NC_008699.1 705040 705633 D PFAM: methyladenine glycosylase; KEGG: cef:CE2657 putative 3-methyladenine-DNA glycosylase; DNA-3-methyladenine glycosylase I 705040..705633 Nocardioides sp. JS614 4599527 YP_921878.1 CDS Noca_0665 NC_008699.1 705814 706992 D PFAM: ROK family protein; KEGG: rha:RHA1_ro02370 possible xylose repressor; ROK family protein 705814..706992 Nocardioides sp. JS614 4599528 YP_921879.1 CDS Noca_0666 NC_008699.1 707010 708410 D catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 707010..708410 Nocardioides sp. JS614 4599529 YP_921880.1 CDS Noca_0667 NC_008699.1 708400 709230 R KEGG: nfa:nfa53170 hypothetical protein; hypothetical protein complement(708400..709230) Nocardioides sp. JS614 4599530 YP_921881.1 CDS rpmG NC_008699.1 709509 709679 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif; 50S ribosomal protein L33 709509..709679 Nocardioides sp. JS614 4599533 YP_921882.1 CDS Noca_0669 NC_008699.1 709747 710715 R hypothetical protein complement(709747..710715) Nocardioides sp. JS614 4599534 YP_921883.1 CDS Noca_0670 NC_008699.1 710748 711149 D KEGG: sco:SCO4636 hypothetical protein; hypothetical protein 710748..711149 Nocardioides sp. JS614 4599535 YP_921884.1 CDS Noca_0671 NC_008699.1 711146 711529 D PFAM: MaoC domain protein dehydratase; KEGG: sco:SCO4637 hypothetical protein; dehydratase 711146..711529 Nocardioides sp. JS614 4599536 YP_921885.1 CDS murB NC_008699.1 711522 712544 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 711522..712544 Nocardioides sp. JS614 4599537 YP_921886.1 CDS Noca_0673 NC_008699.1 712565 712987 R KEGG: nfa:nfa53880 hypothetical protein; hypothetical protein complement(712565..712987) Nocardioides sp. JS614 4599538 YP_921887.1 CDS Noca_0674 NC_008699.1 712984 714015 R catalyzes the formation of inosine from adenosine; adenosine deaminase complement(712984..714015) Nocardioides sp. JS614 4599539 YP_921888.1 CDS Noca_0675 NC_008699.1 714031 715389 R PFAM: aminotransferase, class I and II; KEGG: nfa:nfa2740 hypothetical protein; class I and II aminotransferase complement(714031..715389) Nocardioides sp. JS614 4599540 YP_921889.1 CDS Noca_0676 NC_008699.1 715651 716163 D KEGG: rha:RHA1_ro05298 hypothetical protein; hypothetical protein 715651..716163 Nocardioides sp. JS614 4599541 YP_921890.1 CDS Noca_0677 NC_008699.1 716190 717524 R PFAM: amidohydrolase; Amidohydrolase 3; KEGG: rde:RD1_2007 hydroxydechloroatrazine ethylaminohydrolase, putative; amidohydrolase complement(716190..717524) Nocardioides sp. JS614 4599542 YP_921891.1 CDS Noca_0678 NC_008699.1 717521 719047 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bpm:BURPS1710b_A1655 ribose ABC transporter, ATP-binding protein; ABC transporter-like protein complement(717521..719047) Nocardioides sp. JS614 4599543 YP_921892.1 CDS Noca_0679 NC_008699.1 719049 720212 R KEGG: hso:HS_0765 ABC-type sugar-binding periplasmic protein; sugar ABC transporter periplasmic component-like protein complement(719049..720212) Nocardioides sp. JS614 4597543 YP_921893.1 CDS Noca_0680 NC_008699.1 720263 721294 R PFAM: inner-membrane translocator; KEGG: rha:RHA1_ro09081 ABC sugar transporter, permease component; inner-membrane translocator complement(720263..721294) Nocardioides sp. JS614 4597544 YP_921894.1 CDS Noca_0681 NC_008699.1 721453 722223 R PFAM: regulatory proteins, IclR; KEGG: mpa:MAP2738c hypothetical protein; regulatory proteins IclR complement(721453..722223) Nocardioides sp. JS614 4597545 YP_921895.1 CDS Noca_0683 NC_008699.1 722695 723969 D PFAM: ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain protein; KEGG: mmc:Mmcs_5458 ring hydroxylating dioxygenase, alpha subunit; Rieske (2Fe-2S) domain-containing protein 722695..723969 Nocardioides sp. JS614 4597547 YP_921896.1 CDS Noca_0684 NC_008699.1 723966 724472 D PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit; KEGG: mmc:Mmcs_1690 aromatic-ring-hydroxylating dioxygenase, beta subunit; aromatic-ring-hydroxylating dioxygenase subunit beta 723966..724472 Nocardioides sp. JS614 4597548 YP_921897.1 CDS Noca_0685 NC_008699.1 724472 724777 D hypothetical protein 724472..724777 Nocardioides sp. JS614 4597549 YP_921898.1 CDS Noca_0686 NC_008699.1 724797 726050 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sma:SAV1609 ferredoxin reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 724797..726050 Nocardioides sp. JS614 4597550 YP_921899.1 CDS Noca_0687 NC_008699.1 726069 726860 R PFAM: regulatory proteins, IclR; KEGG: sco:SCO6669 transcriptional regulator; regulatory proteins IclR complement(726069..726860) Nocardioides sp. JS614 4597551 YP_921900.1 CDS Noca_0688 NC_008699.1 726956 727885 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sco:SCO6304 oxidoreductase; glyoxalase/bleomycin resistance protein/dioxygenase complement(726956..727885) Nocardioides sp. JS614 4597552 YP_921901.1 CDS Noca_0689 NC_008699.1 728112 728921 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dar:Daro_3244 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 728112..728921 Nocardioides sp. JS614 4597553 YP_921902.1 CDS Noca_0690 NC_008699.1 728993 730015 D KEGG: jan:Jann_1453 dihydrodipicolinate synthetase; dihydrodipicolinate synthase/N-acetylneuraminate lyase 728993..730015 Nocardioides sp. JS614 4597554 YP_921903.1 CDS Noca_0691 NC_008699.1 730012 731031 D PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: reu:Reut_B3761 ornithine cyclodeaminase/mu-crystallin; ornithine cyclodeaminase 730012..731031 Nocardioides sp. JS614 4597555 YP_921904.1 CDS Noca_0692 NC_008699.1 731028 732461 D PFAM: aldehyde dehydrogenase; KEGG: sme:SMa0260 GabD3 succinate-semialdehyde dehdyrogenase; succinate semialdehyde dehydrogenase 731028..732461 Nocardioides sp. JS614 4597556 YP_921905.1 CDS Noca_0693 NC_008699.1 732574 733476 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sco:SCO6309 LysR-family transcriptional regulator; LysR family transcriptional regulator complement(732574..733476) Nocardioides sp. JS614 4597557 YP_921906.1 CDS Noca_0694 NC_008699.1 733819 734064 D TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: sco:SCO4646 preprotein translocase SecE subunit; preprotein translocase subunit SecE 733819..734064 Nocardioides sp. JS614 4597559 YP_921907.1 CDS Noca_0695 NC_008699.1 734103 735056 D KEGG: sco:SCO4647 transcription antitermination protein; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG; SMART: NGN domain protein; transcription termination/antitermination factor NusG 734103..735056 Nocardioides sp. JS614 4597560 YP_921908.1 CDS Noca_0696 NC_008699.1 735181 735609 D PFAM: ribosomal protein L11; KEGG: pac:PPA1890 50S ribosomal protein L11; 50S ribosomal protein L11 735181..735609 Nocardioides sp. JS614 4597561 YP_921909.1 CDS Noca_0697 NC_008699.1 735634 736413 D PFAM: ribosomal protein L1; KEGG: sco:SCO4649 50S ribosomal protein L1; 50S ribosomal protein L1P 735634..736413 Nocardioides sp. JS614 4597562 YP_921910.1 CDS rplJ NC_008699.1 736854 737540 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 736854..737540 Nocardioides sp. JS614 4597563 YP_921911.1 CDS rplL NC_008699.1 737618 738013 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 737618..738013 Nocardioides sp. JS614 4597564 YP_921912.1 CDS Noca_0700 NC_008699.1 738218 739219 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rha:RHA1_ro02744 ABC superfamily, ATP-binding component; ABC transporter-like protein 738218..739219 Nocardioides sp. JS614 4599804 YP_921913.1 CDS Noca_0701 NC_008699.1 739227 740012 D PFAM: protein of unknown function DUF140; KEGG: sma:SAV5901 putative ABC-transporter integral membrane protein; hypothetical protein 739227..740012 Nocardioides sp. JS614 4599805 YP_921914.1 CDS Noca_0702 NC_008699.1 740019 740846 D PFAM: protein of unknown function DUF140; KEGG: sma:SAV5900 hypothetical protein; hypothetical protein 740019..740846 Nocardioides sp. JS614 4599806 YP_921915.1 CDS Noca_0703 NC_008699.1 740851 742128 D TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5899 mce-related protein; virulence factor Mce family protein 740851..742128 Nocardioides sp. JS614 4599807 YP_921916.1 CDS Noca_0704 NC_008699.1 742125 743171 D TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5898 putative secreted protein; virulence factor Mce family protein 742125..743171 Nocardioides sp. JS614 4599808 YP_921917.1 CDS Noca_0705 NC_008699.1 743363 744328 D TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5897 putative secreted protein; virulence factor Mce family protein 743363..744328 Nocardioides sp. JS614 4599809 YP_921918.1 CDS Noca_0706 NC_008699.1 744330 745469 D TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5896 mce-related protein; virulence factor Mce family protein 744330..745469 Nocardioides sp. JS614 4599810 YP_921919.1 CDS Noca_0707 NC_008699.1 745466 746884 D TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5895 putative secreted protein; virulence factor Mce family protein 745466..746884 Nocardioides sp. JS614 4599811 YP_921920.1 CDS Noca_0708 NC_008699.1 746881 748155 D TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5894 putative secreted protein; virulence factor Mce family protein 746881..748155 Nocardioides sp. JS614 4599812 YP_921921.1 CDS Noca_0709 NC_008699.1 748152 748733 D KEGG: mmc:Mmcs_0159 putative conserved transmembrane protein; hypothetical protein 748152..748733 Nocardioides sp. JS614 4599813 YP_921922.1 CDS Noca_0710 NC_008699.1 748730 749542 D PFAM: heat shock protein DnaJ domain protein; KEGG: rha:RHA1_ro02745 hypothetical protein; heat shock protein DnaJ domain-containing protein 748730..749542 Nocardioides sp. JS614 4599814 YP_921923.1 CDS rpoB NC_008699.1 749765 753265 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 749765..753265 Nocardioides sp. JS614 4599815 YP_921924.1 CDS Noca_0712 NC_008699.1 753385 757257 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 753385..757257 Nocardioides sp. JS614 4599816 YP_921925.1 CDS Noca_0713 NC_008699.1 757478 757981 D KEGG: rha:RHA1_ro01772 hypothetical protein; hypothetical protein 757478..757981 Nocardioides sp. JS614 4599817 YP_921926.1 CDS Noca_0714 NC_008699.1 758037 759284 D TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase; KEGG: rha:RHA1_ro01992 possible dehydrogenase; geranylgeranyl reductase 758037..759284 Nocardioides sp. JS614 4599818 YP_921927.1 CDS Noca_0715 NC_008699.1 759292 760191 D PFAM: NUDIX hydrolase; KEGG: pac:PPA0550 hypothetical protein; NUDIX hydrolase 759292..760191 Nocardioides sp. JS614 4599819 YP_921928.1 CDS Noca_0716 NC_008699.1 760154 761194 R hypothetical protein complement(760154..761194) Nocardioides sp. JS614 4599820 YP_921929.1 CDS Noca_0717 NC_008699.1 761191 762633 R KEGG: gvi:glr0014 phosphate ABC transporter periplasmic phosphate-binding protein; phosphate ABC transporter periplasmic component-like protein complement(761191..762633) Nocardioides sp. JS614 4599821 YP_921930.1 CDS Noca_0718 NC_008699.1 762630 763793 R KEGG: hne:HNE_2670 putative lipoprotein; hypothetical protein complement(762630..763793) Nocardioides sp. JS614 4599822 YP_921931.1 CDS Noca_0719 NC_008699.1 763795 764775 R KEGG: sma:SAV4404 hypothetical protein; hypothetical protein complement(763795..764775) Nocardioides sp. JS614 4599823 YP_921932.1 CDS Noca_0720 NC_008699.1 764772 766433 R KEGG: mmc:Mmcs_0533 hypothetical protein; hypothetical protein complement(764772..766433) Nocardioides sp. JS614 4599824 YP_921933.1 CDS Noca_0721 NC_008699.1 766438 768258 R PFAM: glycosyl transferase, family 2; General secretory system II, protein E domain protein; KEGG: ttj:TTHA0743 glycosyltransferase related protein; general secretion pathway protein E complement(766438..768258) Nocardioides sp. JS614 4599825 YP_921934.1 CDS Noca_0722 NC_008699.1 768573 768866 R hypothetical protein complement(768573..768866) Nocardioides sp. JS614 4599826 YP_921935.1 CDS Noca_0723 NC_008699.1 769096 770184 R PFAM: glycoside hydrolase, family 5; KEGG: sma:SAV1854 endo-1,4-beta-glucanase; glycoside hydrolase family protein complement(769096..770184) Nocardioides sp. JS614 4599827 YP_921936.1 CDS Noca_0724 NC_008699.1 770344 771600 D PFAM: iron-containing alcohol dehydrogenase; KEGG: rxy:Rxyl_2381 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 770344..771600 Nocardioides sp. JS614 4599828 YP_921937.1 CDS Noca_0725 NC_008699.1 771602 774322 D PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; FAD linked oxidase domain protein; KEGG: rha:RHA1_ro00345 possible oxidoreductase, N-termminal; FAD linked oxidase domain-containing protein 771602..774322 Nocardioides sp. JS614 4599829 YP_921938.1 CDS Noca_0726 NC_008699.1 774402 775625 D KEGG: pen:PSEEN4336 hypothetical protein; hypothetical protein 774402..775625 Nocardioides sp. JS614 4599830 YP_921939.1 CDS Noca_0727 NC_008699.1 775625 776599 D KEGG: tfu:Tfu_0244 hypothetical protein; hypothetical protein 775625..776599 Nocardioides sp. JS614 4599831 YP_921940.1 CDS Noca_0728 NC_008699.1 776583 777587 D KEGG: mmc:Mmcs_1279 hypothetical protein; hypothetical protein 776583..777587 Nocardioides sp. JS614 4599832 YP_921941.1 CDS Noca_0729 NC_008699.1 777674 778264 D PFAM: Appr-1-p processing domain protein; KEGG: nfa:nfa36990 hypothetical protein; appr-1-p processing domain-containing protein 777674..778264 Nocardioides sp. JS614 4599833 YP_921942.1 CDS Noca_0730 NC_008699.1 778281 779405 R catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; phosphoserine aminotransferase complement(778281..779405) Nocardioides sp. JS614 4599834 YP_921943.1 CDS Noca_0731 NC_008699.1 779710 780204 D PFAM: GCN5-related N-acetyltransferase; KEGG: sma:SAV3627 acetyltransferase; N-acetyltransferase GCN5 779710..780204 Nocardioides sp. JS614 4599835 YP_921944.1 CDS Noca_0732 NC_008699.1 780264 780821 D hypothetical protein 780264..780821 Nocardioides sp. JS614 4599836 YP_921945.1 CDS Noca_0733 NC_008699.1 780896 782002 R forms citrate from oxaloacetate and acetyl-CoA; functions in TCA cycle; citrate synthase 2 complement(780896..782002) Nocardioides sp. JS614 4599618 YP_921946.1 CDS Noca_0734 NC_008699.1 782076 782717 D KEGG: sma:SAV3858 putative pyridoxamine 5'-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase 782076..782717 Nocardioides sp. JS614 4599619 YP_921947.1 CDS Noca_0735 NC_008699.1 782803 783417 D PFAM: regulatory protein, TetR; KEGG: mmc:Mmcs_2550 transcriptional regulator, TetR family; regulatory protein TetR 782803..783417 Nocardioides sp. JS614 4599620 YP_921948.1 CDS Noca_0736 NC_008699.1 783417 785153 D PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: fal:FRAAL0788 putative ABC phosphate-transporting ATPase; ABC transporter-like protein 783417..785153 Nocardioides sp. JS614 4599621 YP_921949.1 CDS Noca_0737 NC_008699.1 785150 787108 D PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: rha:RHA1_ro04170 bifunctional ABC lipid A exporter; ABC transporter-like protein 785150..787108 Nocardioides sp. JS614 4599622 YP_921950.1 CDS Noca_0738 NC_008699.1 787505 787801 R hypothetical protein complement(787505..787801) Nocardioides sp. JS614 4599623 YP_921951.1 CDS Noca_0739 NC_008699.1 787798 789843 R TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: dsy:DSY2974 hypothetical protein; flagellar biosynthesis protein FlhA complement(787798..789843) Nocardioides sp. JS614 4599624 YP_921952.1 CDS Noca_0740 NC_008699.1 789926 791071 R PFAM: type III secretion exporter; KEGG: plu:plu1895 flagellar biosynthetic protein FlhB; type III secretion exporter complement(789926..791071) Nocardioides sp. JS614 4599625 YP_921953.1 CDS Noca_0741 NC_008699.1 791079 791840 R TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: tbd:Tbd_1612 flagellar biosynthesis protein FliR; flagellar biosynthetic protein FliR complement(791079..791840) Nocardioides sp. JS614 4599626 YP_921954.1 CDS Noca_0742 NC_008699.1 791849 792118 R PFAM: export protein FliQ, family 3; KEGG: mta:Moth_0787 flagellar biosynthetic protein FliQ; export protein FliQ complement(791849..792118) Nocardioides sp. JS614 4599627 YP_921955.1 CDS fliP NC_008699.1 792128 792928 R FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP complement(792128..792928) Nocardioides sp. JS614 4599628 YP_921956.1 CDS Noca_0744 NC_008699.1 792925 793338 R hypothetical protein complement(792925..793338) Nocardioides sp. JS614 4599629 YP_921957.1 CDS Noca_0745 NC_008699.1 793340 794080 R TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: tma:TM0680a chemotaxis protein; flagellar motor switch protein FliN complement(793340..794080) Nocardioides sp. JS614 4599630 YP_921958.1 CDS Noca_0746 NC_008699.1 794077 795084 R PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: tde:TDE2763 flagellar motor switch protein FliM; flagellar motor switch protein FliM complement(794077..795084) Nocardioides sp. JS614 4599631 YP_921959.1 CDS Noca_0747 NC_008699.1 795183 795647 R PFAM: flagellar basal body-associated protein FliL; KEGG: tbd:Tbd_1606 probable flagellar transmembrane protein FliL; flagellar basal body-associated protein FliL complement(795183..795647) Nocardioides sp. JS614 4599632 YP_921960.1 CDS Noca_0748 NC_008699.1 795644 796552 R PFAM: OmpA/MotB domain protein; KEGG: chy:CHY_0964 flagellar motor protein MotB; OmpA/MotB domain-containing protein complement(795644..796552) Nocardioides sp. JS614 4599633 YP_921961.1 CDS Noca_0749 NC_008699.1 796552 797319 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: dsy:DSY3032 hypothetical protein; MotA/TolQ/ExbB proton channel complement(796552..797319) Nocardioides sp. JS614 4599634 YP_921962.1 CDS Noca_0750 NC_008699.1 797319 797609 R PFAM: flagellar FlbD family protein; KEGG: lxx:Lxx06430 motility protein; flagellar FlbD family protein complement(797319..797609) Nocardioides sp. JS614 4599635 YP_921963.1 CDS Noca_0751 NC_008699.1 797716 798564 R PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: bha:BH2449 flagellar hook protein; hypothetical protein complement(797716..798564) Nocardioides sp. JS614 4599636 YP_921964.1 CDS Noca_0752 NC_008699.1 798592 799083 R PFAM: flagellar hook capping protein; KEGG: bja:bll6853 hook formation protein; flagellar hook capping protein complement(798592..799083) Nocardioides sp. JS614 4599637 YP_921965.1 CDS Noca_0753 NC_008699.1 799094 800419 R PFAM: flagellar hook-length control protein; KEGG: lma:LmjF35.0290 hypothetical protein, conserved; flagellar hook-length control protein complement(799094..800419) Nocardioides sp. JS614 4599638 YP_921966.1 CDS Noca_0754 NC_008699.1 800416 801291 R PFAM: NLP/P60 protein; Lytic transglycosylase, catalytic; KEGG: chy:CHY_0404 transglycosylase; lytic transglycosylase catalytic subunit complement(800416..801291) Nocardioides sp. JS614 4599639 YP_921967.1 CDS Noca_0755 NC_008699.1 801396 801848 R hypothetical protein complement(801396..801848) Nocardioides sp. JS614 4599640 YP_921968.1 CDS Noca_0756 NC_008699.1 801845 803152 R KEGG: lxx:Lxx06360 flagellum-like ATP synthase; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; SMART: AAA ATPase; FliI/YscN family ATPase complement(801845..803152) Nocardioides sp. JS614 4599641 YP_921969.1 CDS Noca_0757 NC_008699.1 803294 803968 R KEGG: lxx:Lxx06350 hypothetical protein; hypothetical protein complement(803294..803968) Nocardioides sp. JS614 4599642 YP_921970.1 CDS Noca_0758 NC_008699.1 803952 804977 R PFAM: flagellar motor switch protein FliG; KEGG: gka:GK1220 flagellar motor switch protein; flagellar motor switch protein FliG complement(803952..804977) Nocardioides sp. JS614 4599643 YP_921971.1 CDS Noca_0759 NC_008699.1 804977 806572 R TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring C-terminal domain protein; KEGG: lxx:Lxx06320 flagellar M-ring protein; flagellar M-ring protein FliF complement(804977..806572) Nocardioides sp. JS614 4599644 YP_921972.1 CDS Noca_0760 NC_008699.1 806580 806897 R TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: lxx:Lxx06330 flagellar basal-body protein; flagellar hook-basal body complex subunit FliE complement(806580..806897) Nocardioides sp. JS614 4599645 YP_921973.1 CDS Noca_0761 NC_008699.1 806897 807289 R KEGG: lxx:Lxx06310 flagellar basal-body rod protein; flagellar basal-body rod protein complement(806897..807289) Nocardioides sp. JS614 4599646 YP_921974.1 CDS Noca_0762 NC_008699.1 807289 807645 R TIGRFAM: flagellar basal-body rod protein FlgB; KEGG: sth:STH3006 flagella basal body rod protein; flagellar basal-body rod protein FlgB complement(807289..807645) Nocardioides sp. JS614 4599647 YP_921975.1 CDS Noca_0763 NC_008699.1 807830 808195 R hypothetical protein complement(807830..808195) Nocardioides sp. JS614 4599648 YP_921976.1 CDS Noca_0764 NC_008699.1 808206 808595 R PFAM: flagellar protein FliS; KEGG: lxx:Lxx06280 flagellar-like protein; flagellar protein FliS complement(808206..808595) Nocardioides sp. JS614 4599649 YP_921977.1 CDS Noca_0765 NC_008699.1 808613 809944 R PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: gme:Gmet_0444 flagellar hook-associated protein 2-like; flagellar hook-associated 2 domain-containing protein complement(808613..809944) Nocardioides sp. JS614 4599650 YP_921978.1 CDS Noca_0766 NC_008699.1 810073 811203 R PFAM: flagellin domain protein; KEGG: mta:Moth_0760 flagellin-like; flagellin domain-containing protein complement(810073..811203) Nocardioides sp. JS614 4599651 YP_921979.1 CDS Noca_0767 NC_008699.1 811368 812225 R TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: xac:XAC1933 RNA polymerase sigma factor for flagellar operon FliA; FliA/WhiG family RNA polymerase sigma factor complement(811368..812225) Nocardioides sp. JS614 4599652 YP_921980.1 CDS Noca_0768 NC_008699.1 812411 812932 D hypothetical protein 812411..812932 Nocardioides sp. JS614 4599653 YP_921981.1 CDS Noca_0769 NC_008699.1 812934 814334 D TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: mta:Moth_0746 flagellar hook-associated protein; flagellar hook-associated protein FlgK 812934..814334 Nocardioides sp. JS614 4598849 YP_921982.1 CDS Noca_0770 NC_008699.1 814334 815251 D TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: mta:Moth_0747 flagellin-like; flagellar hook-associated protein 3 814334..815251 Nocardioides sp. JS614 4598850 YP_921983.1 CDS Noca_0771 NC_008699.1 815266 815673 D PFAM: protein of unknown function DUF180; KEGG: sth:STH122 hypothetical protein; hypothetical protein 815266..815673 Nocardioides sp. JS614 4598851 YP_921984.1 CDS Noca_0772 NC_008699.1 815723 815974 D PFAM: carbon storage regulator; KEGG: bld:BLi03781 carbon storage regulator; RBL05035; carbon storage regulator 815723..815974 Nocardioides sp. JS614 4598852 YP_921985.1 CDS Noca_0773 NC_008699.1 816194 817750 D PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO0623 membrane transport protein; major facilitator transporter 816194..817750 Nocardioides sp. JS614 4598853 YP_921986.1 CDS Noca_0774 NC_008699.1 817767 818234 D PFAM: regulatory protein, MarR; KEGG: sco:SCO5287 MarR-family transcriptional regulator; regulatory protein MarR 817767..818234 Nocardioides sp. JS614 4598854 YP_921987.1 CDS Noca_0775 NC_008699.1 818332 819936 R PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: tfu:Tfu_0833 alpha amylase, catalytic subdomain; alpha amylase complement(818332..819936) Nocardioides sp. JS614 4598855 YP_921988.1 CDS Noca_0776 NC_008699.1 819959 820690 R KEGG: tfu:Tfu_1381 hypothetical protein; hypothetical protein complement(819959..820690) Nocardioides sp. JS614 4598856 YP_921989.1 CDS Noca_0777 NC_008699.1 820922 822247 D KEGG: rru:Rru_A1285 WD-40 repeat; hypothetical protein 820922..822247 Nocardioides sp. JS614 4598857 YP_921990.1 CDS Noca_0778 NC_008699.1 822258 823619 R PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein; KEGG: fal:FRAAL0101 deoxyribodipyrimidine photolyase (DNA photolyase) (photoreactivating enzyme); deoxyribodipyrimidine photo-lyase type I complement(822258..823619) Nocardioides sp. JS614 4598858 YP_921991.1 CDS Noca_0779 NC_008699.1 823667 824353 D PFAM: iron dependent repressor; KEGG: sma:SAV3855 putative iron dependent regulatory protein; iron dependent repressor 823667..824353 Nocardioides sp. JS614 4598859 YP_921992.1 CDS Noca_0780 NC_008699.1 824524 824859 D hypothetical protein 824524..824859 Nocardioides sp. JS614 4598860 YP_921993.1 CDS Noca_0781 NC_008699.1 824884 825714 R PFAM: Silent information regulator protein Sir2; KEGG: nfa:nfa43380 putative Sir2 family regulator; silent information regulator protein Sir2 complement(824884..825714) Nocardioides sp. JS614 4598861 YP_921994.1 CDS Noca_0782 NC_008699.1 825711 825980 R KEGG: sme:SMa0044 hypothetical protein; hypothetical protein complement(825711..825980) Nocardioides sp. JS614 4598862 YP_921995.1 CDS Noca_0783 NC_008699.1 826035 827201 D PFAM: Saccharopine dehydrogenase; KEGG: sma:SAV1683 hypothetical protein; saccharopine dehydrogenase 826035..827201 Nocardioides sp. JS614 4598863 YP_921996.1 CDS Noca_0784 NC_008699.1 827499 828701 D TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: sma:SAV2240 transcriptional regulator; cell envelope-related transcriptional attenuator 827499..828701 Nocardioides sp. JS614 4598865 YP_921997.1 CDS Noca_0785 NC_008699.1 828989 829378 R PFAM: large-conductance mechanosensitive channel; KEGG: pac:PPA0491 large conductance mechanosensitive channel; large-conductance mechanosensitive channel complement(828989..829378) Nocardioides sp. JS614 4598866 YP_921998.1 CDS Noca_0786 NC_008699.1 829388 830023 R PFAM: SAF domain; KEGG: rha:RHA1_ro05629 hypothetical protein; SAF domain-containing protein complement(829388..830023) Nocardioides sp. JS614 4598867 YP_921999.1 CDS Noca_0787 NC_008699.1 830100 830381 R TIGRFAM: putative regulatory protein, FmdB family; KEGG: mmc:Mmcs_4292 putative regulatory protein, FmdB; FmdB family regulatory protein complement(830100..830381) Nocardioides sp. JS614 4598868 YP_922000.1 CDS Noca_0788 NC_008699.1 830485 833103 D PFAM: peptidase S45, penicillin amidase; KEGG: sco:SCO3184 putative penicillin acylase; penicillin amidase 830485..833103 Nocardioides sp. JS614 4598869 YP_922001.1 CDS Noca_0789 NC_008699.1 833135 833719 R PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: sco:SCO3183 hypothetical protein; 5-formyltetrahydrofolate cyclo-ligase complement(833135..833719) Nocardioides sp. JS614 4598870 YP_922002.1 CDS Noca_0790 NC_008699.1 833737 835122 D PFAM: UTP--glucose-1-phosphate uridylyltransferase; KEGG: pac:PPA0489 UTP--glucose-1-phosphate uridylyltransferase; UTP--glucose-1-phosphate uridylyltransferase 833737..835122 Nocardioides sp. JS614 4598871 YP_922003.1 CDS Noca_0791 NC_008699.1 835115 836356 D TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: sma:SAV3672 putative molybdopterin biosynthesis protein; molybdopterin molybdochelatase 835115..836356 Nocardioides sp. JS614 4598872 YP_922004.1 CDS moaC NC_008699.1 836359 836850 D MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 836359..836850 Nocardioides sp. JS614 4598873 YP_922005.1 CDS Noca_0793 NC_008699.1 836847 837323 D TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; KEGG: sco:SCO3179 molybdenum cofactor biosynthesis protein (putative secreted protein); molybdopterin adenylyltransferase 836847..837323 Nocardioides sp. JS614 4598874 YP_922006.1 CDS Noca_0794 NC_008699.1 837326 837919 D PFAM: GCN5-related N-acetyltransferase; KEGG: tfu:Tfu_0377 ribosomal-protein-alanine N-acetyltransferase; N-acetyltransferase GCN5 837326..837919 Nocardioides sp. JS614 4598875 YP_922007.1 CDS Noca_0795 NC_008699.1 837981 838799 D KEGG: sco:SCO3177 hypothetical protein; hypothetical protein 837981..838799 Nocardioides sp. JS614 4598876 YP_922008.1 CDS Noca_0796 NC_008699.1 839245 839994 R PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro02334 possible 3-oxoacyl-[acyl-carrier-protein] reductase; short-chain dehydrogenase/reductase SDR complement(839245..839994) Nocardioides sp. JS614 4598878 YP_922009.1 CDS Noca_0797 NC_008699.1 840180 840872 D PFAM: nitroreductase; KEGG: fal:FRAAL2433 putative NADH dehydrogenase (H(2)O(2) forming NADH oxidase) (NADH:oxygen oxidoreductase); nitroreductase 840180..840872 Nocardioides sp. JS614 4598879 YP_922010.1 CDS Noca_0798 NC_008699.1 840912 842549 D KEGG: sus:Acid_6472 methylmalonyl-CoA mutase, large subunit; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; methylmalonyl-CoA mutase large subunit 840912..842549 Nocardioides sp. JS614 4598880 YP_922011.1 CDS Noca_0799 NC_008699.1 842525 842971 D PFAM: cobalamin B12-binding domain protein; KEGG: pfu:PF1946 methylmalonyl-CoAmutase, subunit alpha; cobalamin B12-binding domain-containing protein 842525..842971 Nocardioides sp. JS614 4598881 YP_922012.1 CDS Noca_0800 NC_008699.1 842999 844618 D PFAM: AMP-dependent synthetase and ligase; KEGG: rha:RHA1_ro03966 acyl-CoA synthetase; AMP-dependent synthetase and ligase 842999..844618 Nocardioides sp. JS614 4598882 YP_922013.1 CDS Noca_0801 NC_008699.1 844711 845610 D TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; KEGG: sma:SAV2855 lysine arginine ornithine transport system kinase; LAO/AO transport system ATPase 844711..845610 Nocardioides sp. JS614 4598883 YP_922014.1 CDS Noca_0802 NC_008699.1 845636 846433 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: fal:FRAAL4766 putative enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase 845636..846433 Nocardioides sp. JS614 4598884 YP_922015.1 CDS Noca_0803 NC_008699.1 846460 847596 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: sma:SAV3834 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 846460..847596 Nocardioides sp. JS614 4598885 YP_922016.1 CDS Noca_0804 NC_008699.1 847593 848618 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: mmc:Mmcs_5189 acyl-CoA dehydrogenase-like protein; acyl-CoA dehydrogenase domain-containing protein 847593..848618 Nocardioides sp. JS614 4598886 YP_922017.1 CDS Noca_0805 NC_008699.1 848615 849271 D PFAM: nitroreductase; KEGG: fal:FRAAL2433 putative NADH dehydrogenase (H(2)O(2) forming NADH oxidase) (NADH:oxygen oxidoreductase); nitroreductase 848615..849271 Nocardioides sp. JS614 4598887 YP_922018.1 CDS Noca_0806 NC_008699.1 849369 850565 D KEGG: ret:RHE_PC00149 putative sugar ABC transporter, substrate-binding protein; sugar ABC transporter periplasmic component-like protein 849369..850565 Nocardioides sp. JS614 4598888 YP_922019.1 CDS Noca_0807 NC_008699.1 850567 852060 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: atc:AGR_L_2027 ABC transporter protein, ATP binding component; ABC transporter-like protein 850567..852060 Nocardioides sp. JS614 4598814 YP_922020.1 CDS Noca_0808 NC_008699.1 852075 853136 D PFAM: inner-membrane translocator; KEGG: rha:RHA1_ro08440 probable monosaccharide-transporting ATPase; inner-membrane translocator 852075..853136 Nocardioides sp. JS614 4598815 YP_922021.1 CDS Noca_0809 NC_008699.1 853126 853728 R PFAM: regulatory protein, TetR; KEGG: mlo:mll7734 transcriptional regulator; regulatory protein TetR complement(853126..853728) Nocardioides sp. JS614 4598816 YP_922022.1 CDS Noca_0810 NC_008699.1 853787 854713 D PFAM: luciferase family protein; KEGG: rxy:Rxyl_0369 luciferase-like protein; luciferase family protein 853787..854713 Nocardioides sp. JS614 4598817 YP_922023.1 CDS Noca_0811 NC_008699.1 854737 855504 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bbr:BB0763 enoyl-CoA hydratase; short chain enoyl-CoA hydratase complement(854737..855504) Nocardioides sp. JS614 4598818 YP_922024.1 CDS Noca_0812 NC_008699.1 855501 856640 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bxe:Bxe_C0282 alpha-methylacyl-CoA racemase; L-carnitine dehydratase/bile acid-inducible protein F complement(855501..856640) Nocardioides sp. JS614 4598819 YP_922025.1 CDS Noca_0813 NC_008699.1 856704 857786 D PFAM: luciferase family protein; KEGG: sma:SAV6641 FMN-dependent monooxygenase; luciferase family protein 856704..857786 Nocardioides sp. JS614 4598820 YP_922026.1 CDS fbiC NC_008699.1 857837 860365 D 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase; catalyzes radical-mediated transfer of hydroxybenzyl group from 4-hydroxyphenylpyruvate (HPP) to 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione to form 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO); functions in F420 biosynthesis; FO synthase 857837..860365 Nocardioides sp. JS614 4598821 YP_922027.1 CDS Noca_0815 NC_008699.1 860362 860979 D KEGG: mbo:Mb3007 conserved hypothetical alanine rich protein; hypothetical protein 860362..860979 Nocardioides sp. JS614 4598822 YP_922028.1 CDS Noca_0816 NC_008699.1 860976 861665 D TIGRFAM: NADPH-dependent F420 reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; KEGG: tfu:Tfu_0970 NADPH-dependent F420 reductase; reduced coenzyme F420:NADP oxidoreductase 860976..861665 Nocardioides sp. JS614 4598823 YP_922029.1 CDS Noca_0817 NC_008699.1 861721 862353 R PFAM: regulatory protein, TetR; KEGG: nfa:nfa34140 putative transcriptional regulator; TetR family transcriptional regulator complement(861721..862353) Nocardioides sp. JS614 4598824 YP_922030.1 CDS Noca_0818 NC_008699.1 862466 863611 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rha:RHA1_ro02345 long-chain-acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 862466..863611 Nocardioides sp. JS614 4598825 YP_922031.1 CDS Noca_0820 NC_008699.1 864420 864641 D KEGG: sma:SAV403 putative pyridine nucleotide transhydrogenase, beta subunit; hypothetical protein 864420..864641 Nocardioides sp. JS614 4598827 YP_922032.1 CDS Noca_0821 NC_008699.1 864638 865693 D KEGG: fal:FRAAL3976 putative acyl-CoA dehydrogenase; hypothetical protein 864638..865693 Nocardioides sp. JS614 4598828 YP_922033.1 CDS Noca_0822 NC_008699.1 865939 866193 R hypothetical protein complement(865939..866193) Nocardioides sp. JS614 4598829 YP_922034.1 CDS Noca_0824 NC_008699.1 867678 867911 R PFAM: protein of unknown function DUF1271; KEGG: mac:MA1680 hypothetical protein; hypothetical protein complement(867678..867911) Nocardioides sp. JS614 4598831 YP_922035.1 CDS Noca_0825 NC_008699.1 867901 868410 R TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: sma:SAV1546 hypothetical protein; alkylhydroperoxidase complement(867901..868410) Nocardioides sp. JS614 4598832 YP_922036.1 CDS Noca_0826 NC_008699.1 868911 870242 D PFAM: ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain protein; KEGG: rha:RHA1_ro02842 large subunit of ring-hydroxylating dioxygenase; Rieske (2Fe-2S) domain-containing protein 868911..870242 Nocardioides sp. JS614 4598833 YP_922037.1 CDS Noca_0827 NC_008699.1 870239 870829 D PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit; KEGG: fal:FRAAL3401 putative dioxygenase component, beta subunit; aromatic-ring-hydroxylating dioxygenase subunit beta 870239..870829 Nocardioides sp. JS614 4598834 YP_922038.1 CDS Noca_0828 NC_008699.1 870841 871176 D hypothetical protein 870841..871176 Nocardioides sp. JS614 4598835 YP_922039.1 CDS Noca_0829 NC_008699.1 871173 871871 D PFAM: glutamine amidotransferase class-I; KEGG: sai:Saci_1154 hypothetical protein; glutamine amidotransferase 871173..871871 Nocardioides sp. JS614 4598836 YP_922040.1 CDS Noca_0830 NC_008699.1 871940 873433 D PFAM: glutamine synthetase, catalytic region; KEGG: bja:bll1069 probable glutamine synthetase; L-glutamine synthetase 871940..873433 Nocardioides sp. JS614 4598837 YP_922041.1 CDS Noca_0831 NC_008699.1 873482 873802 D PFAM: ferredoxin; KEGG: bmb:BruAb1_1031 ferredoxin, 2Fe-2S; ferredoxin 873482..873802 Nocardioides sp. JS614 4598838 YP_922042.1 CDS Noca_0832 NC_008699.1 873799 875076 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rfr:Rfer_0300 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 873799..875076 Nocardioides sp. JS614 4598839 YP_922043.1 CDS Noca_0833 NC_008699.1 875076 875939 D PFAM: alpha/beta hydrolase fold; KEGG: mmc:Mmcs_1701 4-carboxymuconolactone decarboxylase; alpha/beta hydrolase fold protein 875076..875939 Nocardioides sp. JS614 4598840 YP_922044.1 CDS Noca_0834 NC_008699.1 875971 876963 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: mmc:Mmcs_1374 transcriptional regulator, LysR family; substrate-binding protein LysR 875971..876963 Nocardioides sp. JS614 4598841 YP_922045.1 CDS Noca_0835 NC_008699.1 876960 878063 D PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: nfa:nfa35210 putative muconate cycloisomerase; mandelate racemase/muconate lactonizing protein 876960..878063 Nocardioides sp. JS614 4598842 YP_922046.1 CDS Noca_0836 NC_008699.1 878140 879003 D TIGRFAM: catechol 1,2-dioxygenase; PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase, N-terminal domain protein; KEGG: mmc:Mmcs_1376 catechol 1,2-dioxygenase; catechol 1,2-dioxygenase 878140..879003 Nocardioides sp. JS614 4598843 YP_922047.1 CDS Noca_0837 NC_008699.1 879003 879290 D PFAM: Muconolactone delta-isomerase; KEGG: nfa:nfa35230 putative muconolactone delta-isomerase; muconolactone delta-isomerase 879003..879290 Nocardioides sp. JS614 4598844 YP_922048.1 CDS Noca_0838 NC_008699.1 879307 879969 R KEGG: nha:Nham_3300 hypothetical protein; hypothetical protein complement(879307..879969) Nocardioides sp. JS614 4598845 YP_922049.1 CDS Noca_0839 NC_008699.1 880002 880433 R PFAM: ferric-uptake regulator; KEGG: nfa:nfa3250 putative ferric uptake regulator; ferric-uptake regulator complement(880002..880433) Nocardioides sp. JS614 4598846 YP_922050.1 CDS Noca_0840 NC_008699.1 880565 881077 R PFAM: regulatory protein, MarR; KEGG: rha:RHA1_ro08295 transcriptional regulator, MarR family; regulatory protein MarR complement(880565..881077) Nocardioides sp. JS614 4598847 YP_922051.1 CDS Noca_0841 NC_008699.1 881077 881817 R PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: bha:BH3167 transcriptional regulator (GntR family); GntR family transcriptional regulator complement(881077..881817) Nocardioides sp. JS614 4598848 YP_922052.1 CDS Noca_0842 NC_008699.1 881864 882100 R hypothetical protein complement(881864..882100) Nocardioides sp. JS614 4597901 YP_922053.1 CDS Noca_0843 NC_008699.1 882097 882534 R PFAM: protein of unknown function DUF35; KEGG: bja:bll2959 hypothetical protein; hypothetical protein complement(882097..882534) Nocardioides sp. JS614 4597902 YP_922054.1 CDS Noca_0844 NC_008699.1 882534 883688 R KEGG: pol:Bpro_5255 thiolase; thiolase complement(882534..883688) Nocardioides sp. JS614 4597903 YP_922055.1 CDS Noca_0845 NC_008699.1 883685 884863 R PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: mes:Meso_4533 mandelate racemase/muconate lactonizing enzyme-like; mandelate racemase/muconate lactonizing protein complement(883685..884863) Nocardioides sp. JS614 4597904 YP_922056.1 CDS Noca_0846 NC_008699.1 884902 886383 R PFAM: aldehyde dehydrogenase; KEGG: bxe:Bxe_A3599 betaine-aldehyde dehydrogenase; aldehyde dehydrogenase complement(884902..886383) Nocardioides sp. JS614 4597905 YP_922057.1 CDS Noca_0847 NC_008699.1 886380 886730 R PFAM: Cupin 2, conserved barrel domain protein; KEGG: hma:rrnAC3415 hypothetical protein; cupin complement(886380..886730) Nocardioides sp. JS614 4597906 YP_922058.1 CDS Noca_0848 NC_008699.1 886736 887203 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rha:RHA1_ro00742 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase complement(886736..887203) Nocardioides sp. JS614 4597907 YP_922059.1 CDS Noca_0849 NC_008699.1 887220 888101 R PFAM: luciferase family protein; KEGG: rha:RHA1_ro05823 hypothetical protein; luciferase family protein complement(887220..888101) Nocardioides sp. JS614 4597908 YP_922060.1 CDS Noca_0850 NC_008699.1 888103 888909 R PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: sco:SCO7702 GntR-family transcriptional regulator; GntR family transcriptional regulator complement(888103..888909) Nocardioides sp. JS614 4597909 YP_922061.1 CDS Noca_0851 NC_008699.1 889104 890294 D PFAM: Extracellular ligand-binding receptor; KEGG: rxy:Rxyl_0193 extracellular ligand-binding receptor; extracellular ligand-binding receptor 889104..890294 Nocardioides sp. JS614 4597910 YP_922062.1 CDS Noca_0852 NC_008699.1 890339 891205 D PFAM: inner-membrane translocator; KEGG: mag:amb2873 branched-chain amino acid ABC-type transport system; inner-membrane translocator 890339..891205 Nocardioides sp. JS614 4597911 YP_922063.1 CDS Noca_0853 NC_008699.1 891202 892227 D PFAM: inner-membrane translocator; KEGG: rxy:Rxyl_0195 inner-membrane translocator; inner-membrane translocator 891202..892227 Nocardioides sp. JS614 4597912 YP_922064.1 CDS Noca_0854 NC_008699.1 892224 892976 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bpa:BPP2198 putative ABC transport system, ATP-bidning protein; ABC transporter-like protein 892224..892976 Nocardioides sp. JS614 4597913 YP_922065.1 CDS Noca_0855 NC_008699.1 892969 893658 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bbr:BB2905 high-affinity branched-chain amino acid transport, ATP-binding protein; ABC transporter-like protein 892969..893658 Nocardioides sp. JS614 4597914 YP_922066.1 CDS Noca_0856 NC_008699.1 893655 894725 D KEGG: afu:AF1066 N5,N10-methylenetetrahydromethanopterin reductase; coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein 893655..894725 Nocardioides sp. JS614 4597915 YP_922067.1 CDS Noca_0857 NC_008699.1 894722 895423 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpb:RPB_0555 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 894722..895423 Nocardioides sp. JS614 4597916 YP_922068.1 CDS Noca_0858 NC_008699.1 895420 896580 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: reu:Reut_A1835 acyl-CoA dehydrogenase, C-terminal:acyl-CoA dehydrogenase, central region:acyl-CoA dehydrogenase, N-terminal; acyl-CoA dehydrogenase domain-containing protein 895420..896580 Nocardioides sp. JS614 4597917 YP_922069.1 CDS Noca_0859 NC_008699.1 896586 897776 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rxy:Rxyl_0244 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 896586..897776 Nocardioides sp. JS614 4597918 YP_922070.1 CDS Noca_0860 NC_008699.1 897773 899398 D PFAM: AMP-dependent synthetase and ligase; KEGG: rxy:Rxyl_1704 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 897773..899398 Nocardioides sp. JS614 4597919 YP_922071.1 CDS Noca_0861 NC_008699.1 899395 900222 D PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: gka:GK2036 3-hydroxybutyryl-CoA dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase 899395..900222 Nocardioides sp. JS614 4597920 YP_922072.1 CDS Noca_0862 NC_008699.1 900219 900980 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rha:RHA1_ro01928 probable enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase 900219..900980 Nocardioides sp. JS614 4597921 YP_922073.1 CDS fbiC NC_008699.1 900977 903535 D 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase; catalyzes radical-mediated transfer of hydroxybenzyl group from 4-hydroxyphenylpyruvate (HPP) to 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione to form 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO); functions in F420 biosynthesis; FO synthase 900977..903535 Nocardioides sp. JS614 4597922 YP_922074.1 CDS Noca_0864 NC_008699.1 903557 904225 D TIGRFAM: NADPH-dependent F420 reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE, N-terminal domain protein; KEGG: tfu:Tfu_0970 NADPH-dependent F420 reductase; reduced coenzyme F420:NADP oxidoreductase 903557..904225 Nocardioides sp. JS614 4597923 YP_922075.1 CDS Noca_0865 NC_008699.1 904225 904857 D KEGG: sco:SCO5557a hypothetical protein; hypothetical protein 904225..904857 Nocardioides sp. JS614 4597924 YP_922076.1 CDS Noca_0866 NC_008699.1 904854 905501 D PFAM: GTP cyclohydrolase II; KEGG: sma:SAV545 putative GTP cyclohydrolase II; GTP cyclohydrolase II 904854..905501 Nocardioides sp. JS614 4597925 YP_922077.1 CDS Noca_0867 NC_008699.1 905564 906265 D KEGG: lma:LmjF35.0540 proteophosphoglycan 5; proteophosphoglycan 5 905564..906265 Nocardioides sp. JS614 4597926 YP_922078.1 CDS Noca_0868 NC_008699.1 906311 907513 R PFAM: ROK family protein; KEGG: ret:RHE_CH01552 probable transcriptional regulator protein, ROK family; ROK family protein complement(906311..907513) Nocardioides sp. JS614 4599875 YP_922079.1 CDS Noca_0869 NC_008699.1 907548 908882 D PFAM: extracellular solute-binding protein, family 1; KEGG: sme:SMb21221 putative sugar uptake ABC transporter periplasmic solute-binding protein precursor; extracellular solute-binding protein 907548..908882 Nocardioides sp. JS614 4599876 YP_922080.1 CDS Noca_0870 NC_008699.1 908885 909814 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mxa:MXAN_7294 putative sugar ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 908885..909814 Nocardioides sp. JS614 4599877 YP_922081.1 CDS Noca_0871 NC_008699.1 909811 910665 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMb21219 putative sugar uptake ABC transporter permease protein; binding-protein-dependent transport systems inner membrane component 909811..910665 Nocardioides sp. JS614 4599878 YP_922082.1 CDS Noca_0872 NC_008699.1 910672 911658 D PFAM: sugar isomerase (SIS); KEGG: mes:Meso_3554 sugar isomerase (SIS); sugar isomerase (SIS) 910672..911658 Nocardioides sp. JS614 4599879 YP_922083.1 CDS Noca_0873 NC_008699.1 911655 912602 D PFAM: PfkB domain protein; KEGG: mlo:mlr3644 carbohydrate kinase; ribokinase-like domain-containing protein 911655..912602 Nocardioides sp. JS614 4599880 YP_922084.1 CDS Noca_0874 NC_008699.1 912634 913074 D PFAM: ferric-uptake regulator; KEGG: rha:RHA1_ro05274 Fe(3+) uptake regulator; ferric-uptake regulator 912634..913074 Nocardioides sp. JS614 4599881 YP_922085.1 CDS Noca_0875 NC_008699.1 913103 915385 D KEGG: rha:RHA1_ro05275 catalase; TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; catalase/peroxidase HPI 913103..915385 Nocardioides sp. JS614 4599882 YP_922086.1 CDS Noca_0876 NC_008699.1 915993 916691 R KEGG: dra:DR1380 hypothetical protein; hypothetical protein complement(915993..916691) Nocardioides sp. JS614 4599883 YP_922087.1 CDS Noca_0877 NC_008699.1 916823 917095 R KEGG: fal:FRAAL6695 hypothetical protein; hypothetical protein complement(916823..917095) Nocardioides sp. JS614 4599884 YP_922088.1 CDS Noca_0878 NC_008699.1 917139 917537 R PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: fal:FRAAL1971 conserved hypothetical protein; putative FMN-binding split barrel domain; pyridoxamine 5'-phosphate oxidase-like protein complement(917139..917537) Nocardioides sp. JS614 4599885 YP_922089.1 CDS Noca_0879 NC_008699.1 917552 918058 D PFAM: Clp N terminal domain protein; Clp N terminal domain-containing protein 917552..918058 Nocardioides sp. JS614 4599886 YP_922090.1 CDS Noca_0880 NC_008699.1 918100 919143 D PFAM: aldo/keto reductase; KEGG: tfu:Tfu_2293 oxidoreductase; aldo/keto reductase 918100..919143 Nocardioides sp. JS614 4599887 YP_922091.1 CDS Noca_0881 NC_008699.1 919445 919984 D hypothetical protein 919445..919984 Nocardioides sp. JS614 4599888 YP_922092.1 CDS Noca_0882 NC_008699.1 920042 921766 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV1878 ABC transporter ATP-binding protein; ABC transporter-like protein 920042..921766 Nocardioides sp. JS614 4599889 YP_922093.1 CDS Noca_0883 NC_008699.1 921763 922023 D hypothetical protein 921763..922023 Nocardioides sp. JS614 4599890 YP_922094.1 CDS Noca_0884 NC_008699.1 922326 923579 R PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: rha:RHA1_ro05624 possible serine protease, C-terminal; peptidase S1 and S6, chymotrypsin/Hap complement(922326..923579) Nocardioides sp. JS614 4599891 YP_922095.1 CDS Noca_0885 NC_008699.1 923694 924941 D PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV7030 transmembrane efflux protein; major facilitator transporter 923694..924941 Nocardioides sp. JS614 4599892 YP_922096.1 CDS Noca_0886 NC_008699.1 925050 927533 D TIGRFAM: conserved repeat domain; PFAM: protein of unknown function DUF11; KEGG: rpd:RPD_3003 outer membrane autotransporter barrel; hypothetical protein 925050..927533 Nocardioides sp. JS614 4599893 YP_922097.1 CDS Noca_0887 NC_008699.1 927552 928172 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: eli:ELI_10920 hydrolase, haloacid dehalogenase-like family protein; HAD family hydrolase complement(927552..928172) Nocardioides sp. JS614 4599894 YP_922098.1 CDS Noca_0888 NC_008699.1 928401 929744 R KEGG: rxy:Rxyl_1676 citrate synthase I; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; citrate synthase complement(928401..929744) Nocardioides sp. JS614 4599895 YP_922099.1 CDS rplM NC_008699.1 929942 930385 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 929942..930385 Nocardioides sp. JS614 4599896 YP_922100.1 CDS rpsI NC_008699.1 930421 930921 D forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 930421..930921 Nocardioides sp. JS614 4599897 YP_922101.1 CDS Noca_0891 NC_008699.1 930930 932276 D TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: sma:SAV4959 putative phosphoglucomutase/phosphomannomutase; phosphoglucosamine mutase 930930..932276 Nocardioides sp. JS614 4599898 YP_922102.1 CDS Noca_0892 NC_008699.1 932286 933194 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO1742 putative ABC-transporter ATP-binding protein; ABC transporter-like protein 932286..933194 Nocardioides sp. JS614 4599899 YP_922103.1 CDS Noca_0893 NC_008699.1 933191 933991 D KEGG: rha:RHA1_ro06014 hypothetical protein; hypothetical protein 933191..933991 Nocardioides sp. JS614 4599900 YP_922104.1 CDS Noca_0894 NC_008699.1 934127 934765 D hypothetical protein 934127..934765 Nocardioides sp. JS614 4599901 YP_922105.1 CDS Noca_0895 NC_008699.1 934760 935749 R catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase complement(934760..935749) Nocardioides sp. JS614 4599902 YP_922106.1 CDS Noca_0896 NC_008699.1 935791 937635 D Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 935791..937635 Nocardioides sp. JS614 4599903 YP_922107.1 CDS acpS NC_008699.1 937658 938008 D Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 937658..938008 Nocardioides sp. JS614 4599904 YP_922108.1 CDS Noca_0898 NC_008699.1 938044 938970 R KEGG: fra:Francci3_0932 hypothetical protein; hypothetical protein complement(938044..938970) Nocardioides sp. JS614 4599905 YP_922109.1 CDS Noca_0899 NC_008699.1 939105 940484 D TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family N-terminal domain protein; KEGG: sco:SCO4742 hypothetical protein; carbohydrate kinase 939105..940484 Nocardioides sp. JS614 4599906 YP_922110.1 CDS Noca_0900 NC_008699.1 940501 941637 D KEGG: sco:SCO4745 putative alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase 940501..941637 Nocardioides sp. JS614 4599582 YP_922111.1 CDS Noca_0901 NC_008699.1 941634 942716 D PFAM: alpha/beta hydrolase fold; KEGG: sma:SAV4968 hydrolase; alpha/beta hydrolase fold protein 941634..942716 Nocardioides sp. JS614 4599583 YP_922112.1 CDS Noca_0902 NC_008699.1 943196 943642 D PFAM: protein of unknown function UPF0079; KEGG: sma:SAV4969 hypothetical protein; hypothetical protein 943196..943642 Nocardioides sp. JS614 4599584 YP_922113.1 CDS Noca_0903 NC_008699.1 943652 944632 D KEGG: rxy:Rxyl_3097 hypothetical protein; hypothetical protein 943652..944632 Nocardioides sp. JS614 4599585 YP_922114.1 CDS Noca_0904 NC_008699.1 944622 947294 R PFAM: glycosyl transferase, group 1; KEGG: sco:SCO2592 transferase; group 1 glycosyl transferase complement(944622..947294) Nocardioides sp. JS614 4599586 YP_922115.1 CDS Noca_0905 NC_008699.1 947305 948096 R hypothetical protein complement(947305..948096) Nocardioides sp. JS614 4599587 YP_922116.1 CDS Noca_0906 NC_008699.1 948194 948763 R KEGG: sma:SAV2206 hypothetical protein; hypothetical protein complement(948194..948763) Nocardioides sp. JS614 4599588 YP_922117.1 CDS ligC NC_008699.1 948797 949897 R catalyzes the ATP-dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; in mycobacteria LigC has weak intrinsic nick joining activities and is not essential for growth; ATP-dependent DNA ligase complement(948797..949897) Nocardioides sp. JS614 4599589 YP_922118.1 CDS Noca_0908 NC_008699.1 950118 951548 D KEGG: cef:CE1016 glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase; TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; glucosamine-1-phosphate N-acetyltransferase/UDP-N-acetylglucosamine pyrophosphorylase 950118..951548 Nocardioides sp. JS614 4599591 YP_922119.1 CDS Noca_0909 NC_008699.1 951523 952566 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 951523..952566 Nocardioides sp. JS614 4599592 YP_922120.1 CDS Noca_0910 NC_008699.1 952577 955000 R TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: sco:SCO2018 putative aminopeptidase; aminopeptidase N complement(952577..955000) Nocardioides sp. JS614 4599593 YP_922121.1 CDS Noca_0911 NC_008699.1 955236 955907 D TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal protein L25; KEGG: rha:RHA1_ro05695 50S ribosomal protein L25; 50S ribosomal protein L25 955236..955907 Nocardioides sp. JS614 4599594 YP_922122.1 CDS Noca_0912 NC_008699.1 955904 956557 D PFAM: peptidyl-tRNA hydrolase; KEGG: sco:SCO3125 peptidyl-tRNA hydrolase; peptidyl-tRNA hydrolase 955904..956557 Nocardioides sp. JS614 4599595 YP_922123.1 CDS Noca_0913 NC_008699.1 956589 957368 D PFAM: inositol monophosphatase; KEGG: mmc:Mmcs_3917 inositol monophosphatase; inositol monophosphatase 956589..957368 Nocardioides sp. JS614 4599596 YP_922124.1 CDS Noca_0914 NC_008699.1 957365 957817 D KEGG: sma:SAV3169 hypothetical protein; hypothetical protein 957365..957817 Nocardioides sp. JS614 4599597 YP_922125.1 CDS Noca_0915 NC_008699.1 958095 959102 D TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fra:Francci3_4264 phosphate ABC transporter, permease protein PstC; phosphate ABC transporter permease 958095..959102 Nocardioides sp. JS614 4599598 YP_922126.1 CDS Noca_0916 NC_008699.1 959102 960292 D TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fal:FRAAL6533 phosphate ABC transporter permease protein; phosphate ABC transporter permease 959102..960292 Nocardioides sp. JS614 4599599 YP_922127.1 CDS Noca_0917 NC_008699.1 960289 961923 D TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; KEGG: fal:FRAAL6535 high-affinity phosphate transport protein (ABC superfamily); phosphate ABC transporter, periplasmic phosphate-binding protein 960289..961923 Nocardioides sp. JS614 4599600 YP_922128.1 CDS Noca_0918 NC_008699.1 961920 964475 D hypothetical protein 961920..964475 Nocardioides sp. JS614 4599601 YP_922129.1 CDS Noca_0919 NC_008699.1 964472 965458 D PFAM: peptidase C60, sortase A and B; KEGG: fal:FRAAL2033 putative sortase (surface protein transpeptidase); peptidase C60, sortase A and B 964472..965458 Nocardioides sp. JS614 4599602 YP_922130.1 CDS Noca_0920 NC_008699.1 965534 967063 D KEGG: cya:CYA_1212 phosphate uptake transporter (PhoT) ABC transporter family, substrate-binding protein; phosphate ABC transporter periplasmic component-like protein 965534..967063 Nocardioides sp. JS614 4599603 YP_922131.1 CDS Noca_0921 NC_008699.1 967179 968009 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cef:CE2464 putative phosphate transport system ATP-binding protein; ABC transporter-like protein 967179..968009 Nocardioides sp. JS614 4599604 YP_922132.1 CDS Noca_0922 NC_008699.1 968028 968777 D KEGG: tfu:Tfu_2594 similar to membrane-bound lytic murein transglycosylase B; membrane-bound lytic murein transglycosylase B-like protein 968028..968777 Nocardioides sp. JS614 4599605 YP_922133.1 CDS Noca_0923 NC_008699.1 968863 969573 D PFAM: Collagen triple helix repeat; KEGG: hso:HS_1632 conserved hypothetical protein; triple helix repeat-containing collagen 968863..969573 Nocardioides sp. JS614 4599606 YP_922134.1 CDS Noca_0924 NC_008699.1 969688 973362 D KEGG: sco:SCO3109 putative transcriptional-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; transcription-repair coupling factor 969688..973362 Nocardioides sp. JS614 4599607 YP_922135.1 CDS Noca_0925 NC_008699.1 973359 974018 D hypothetical protein 973359..974018 Nocardioides sp. JS614 4599608 YP_922136.1 CDS Noca_0926 NC_008699.1 974046 974747 D PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: sma:SAV3537 putative MazG-family transcriptional regulator; MazG nucleotide pyrophosphohydrolase 974046..974747 Nocardioides sp. JS614 4599609 YP_922137.1 CDS Noca_0927 NC_008699.1 974800 975825 R KEGG: mpa:MAP3892 hypothetical protein; hypothetical protein complement(974800..975825) Nocardioides sp. JS614 4599610 YP_922138.1 CDS eno NC_008699.1 976131 977408 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 976131..977408 Nocardioides sp. JS614 4599611 YP_922139.1 CDS Noca_0929 NC_008699.1 977424 977978 D PFAM: Septum formation initiator; KEGG: pac:PPA0546 conserved protein, putative septum formation initiator; septum formation initiator 977424..977978 Nocardioides sp. JS614 4599612 YP_922140.1 CDS Noca_0930 NC_008699.1 977981 978487 D PFAM: protein of unknown function DUF501; KEGG: sma:SAV3531 hypothetical protein; hypothetical protein 977981..978487 Nocardioides sp. JS614 4599613 YP_922141.1 CDS Noca_0931 NC_008699.1 978478 979404 D PFAM: Ppx/GppA phosphatase; KEGG: sco:SCO3093 hydrolase; Ppx/GppA phosphatase 978478..979404 Nocardioides sp. JS614 4599614 YP_922142.1 CDS Noca_0932 NC_008699.1 979462 979863 D PFAM: protein of unknown function DUF1469; KEGG: sco:SCO1911 integral membrane protein; hypothetical protein 979462..979863 Nocardioides sp. JS614 4599615 YP_922143.1 CDS Noca_0933 NC_008699.1 979860 980108 D KEGG: mmc:Mmcs_2235 hypothetical protein; hypothetical protein 979860..980108 Nocardioides sp. JS614 4599616 YP_922144.1 CDS Noca_0934 NC_008699.1 980169 980435 D KEGG: sma:SAV5684 hypothetical protein; hypothetical protein 980169..980435 Nocardioides sp. JS614 4599617 YP_922145.1 CDS Noca_0935 NC_008699.1 980491 981345 D PFAM: Uracil-DNA glycosylase superfamily; KEGG: fal:FRAAL6229 uracil-DNA glycosylase; uracil-DNA glycosylase superfamily protein 980491..981345 Nocardioides sp. JS614 4597467 YP_922146.1 CDS Noca_0936 NC_008699.1 981605 982429 D PFAM: Methyltransferase type 11; KEGG: bte:BTH_I1959 hypothetical protein; type 11 methyltransferase 981605..982429 Nocardioides sp. JS614 4597469 YP_922147.1 CDS Noca_0937 NC_008699.1 982796 983680 D PFAM: protein of unknown function DUF1112; KEGG: pac:PPA0549 membrane spanning protein; hypothetical protein 982796..983680 Nocardioides sp. JS614 4597470 YP_922148.1 CDS Noca_0938 NC_008699.1 983957 985003 R PFAM: lipolytic enzyme, G-D-S-L family; KEGG: sma:SAV3511 secreted protein; GDSL family lipase complement(983957..985003) Nocardioides sp. JS614 4597471 YP_922149.1 CDS Noca_0939 NC_008699.1 985091 986479 D KEGG: rha:RHA1_ro05843 probable cystathionine beta-synthase; TIGRFAM: cystathionine beta-synthase; PFAM: CBS domain containing protein; Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; cystathionine beta-synthase 985091..986479 Nocardioides sp. JS614 4597472 YP_922150.1 CDS Noca_0940 NC_008699.1 986574 987035 D PFAM: protein of unknown function DUF35; KEGG: mbo:Mb1654c hypothetical protein; hypothetical protein 986574..987035 Nocardioides sp. JS614 4597473 YP_922151.1 CDS Noca_0941 NC_008699.1 987032 988228 D KEGG: mpa:MAP1320c lipid-transfer protein; lipid-transfer protein 987032..988228 Nocardioides sp. JS614 4597474 YP_922152.1 CDS Noca_0942 NC_008699.1 988484 989938 D PFAM: cytochrome bd ubiquinol oxidase, subunit I; KEGG: lxx:Lxx12300 cytochrome D ubiquinol oxidase subunit I; cytochrome bd ubiquinol oxidase subunit I 988484..989938 Nocardioides sp. JS614 4597475 YP_922153.1 CDS Noca_0943 NC_008699.1 989954 990982 D TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; KEGG: sco:SCO3946 putative cytochrome oxidase subunit II; cytochrome d ubiquinol oxidase subunit II 989954..990982 Nocardioides sp. JS614 4597476 YP_922154.1 CDS Noca_0944 NC_008699.1 990990 994235 D KEGG: sco:SCO3947 putative ABC transporter; TIGRFAM: ABC transporter, transmembrane region, type 1; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; ABC transporter transmembrane protein, type 1 990990..994235 Nocardioides sp. JS614 4597477 YP_922155.1 CDS Noca_0945 NC_008699.1 994232 994882 D PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: fra:Francci3_3253 two component transcriptional regulator, LuxR family; response regulator receiver 994232..994882 Nocardioides sp. JS614 4597478 YP_922156.1 CDS Noca_0946 NC_008699.1 994910 996520 R PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: sco:SCO0203 two-component sensor; GAF domain-containing protein complement(994910..996520) Nocardioides sp. JS614 4597479 YP_922157.1 CDS Noca_0947 NC_008699.1 996517 996981 R PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: sco:SCO0174 putative DNA-binding protein; pyridoxamine 5'-phosphate oxidase-like protein complement(996517..996981) Nocardioides sp. JS614 4597480 YP_922158.1 CDS Noca_0948 NC_008699.1 997118 997990 D PFAM: UspA domain protein; KEGG: rha:RHA1_ro04893 universal stress protein; UspA domain-containing protein 997118..997990 Nocardioides sp. JS614 4597481 YP_922159.1 CDS Noca_0949 NC_008699.1 997994 998392 D PFAM: CBS domain containing protein; KEGG: pai:PAE3319 conserved protein with 2 CBS domains; hypothetical protein 997994..998392 Nocardioides sp. JS614 4597482 YP_922160.1 CDS Noca_0950 NC_008699.1 998389 998754 R KEGG: mmc:Mmcs_2103 sec-C motif containing protein; SecC motif-containing protein complement(998389..998754) Nocardioides sp. JS614 4597483 YP_922161.1 CDS Noca_0951 NC_008699.1 998921 999970 D PFAM: UspA domain protein; KEGG: cjk:jk0100 putative universal stress protein; UspA domain-containing protein 998921..999970 Nocardioides sp. JS614 4597484 YP_922162.1 CDS Noca_0952 NC_008699.1 1000098 1001486 D KEGG: rha:RHA1_ro05589 probable magnesium chelatase subunit ChlI; putative magnesium chelatase subunit ChlI 1000098..1001486 Nocardioides sp. JS614 4597485 YP_922163.1 CDS Noca_0953 NC_008699.1 1001486 1003498 D PFAM: von Willebrand factor, type A; KEGG: rha:RHA1_ro05590 hypothetical protein; von Willebrand factor, type A 1001486..1003498 Nocardioides sp. JS614 4597486 YP_922164.1 CDS Noca_0954 NC_008699.1 1003517 1006012 R PFAM: glycoside hydrolase, family 31; KEGG: tfu:Tfu_1613 putative alpha-glucosidase; glycoside hydrolase family protein complement(1003517..1006012) Nocardioides sp. JS614 4597487 YP_922165.1 CDS Noca_0955 NC_008699.1 1006047 1006445 R hypothetical protein complement(1006047..1006445) Nocardioides sp. JS614 4597488 YP_922166.1 CDS Noca_0956 NC_008699.1 1006703 1007299 D hypothetical protein 1006703..1007299 Nocardioides sp. JS614 4597489 YP_922167.1 CDS Noca_0957 NC_008699.1 1007322 1008170 R KEGG: rxy:Rxyl_3164 periplasmic binding protein; periplasmic binding protein complement(1007322..1008170) Nocardioides sp. JS614 4597490 YP_922168.1 CDS Noca_0958 NC_008699.1 1008253 1008927 R hypothetical protein complement(1008253..1008927) Nocardioides sp. JS614 4597491 YP_922169.1 CDS Noca_0959 NC_008699.1 1009117 1009896 D PFAM: protein of unknown function DUF81; KEGG: sco:SCO2485 hypothetical protein; hypothetical protein 1009117..1009896 Nocardioides sp. JS614 4597492 YP_922170.1 CDS Noca_0960 NC_008699.1 1009890 1010549 D PFAM: protein of unknown function UPF0029; KEGG: rha:RHA1_ro05575 hypothetical protein; hypothetical protein 1009890..1010549 Nocardioides sp. JS614 4597493 YP_922171.1 CDS Noca_0961 NC_008699.1 1010546 1010860 D PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: mpa:MAP3938c hypothetical protein; pyridoxamine 5'-phosphate oxidase-like protein 1010546..1010860 Nocardioides sp. JS614 4597494 YP_922172.1 CDS Noca_0962 NC_008699.1 1010857 1011603 D KEGG: sma:SAV3002 hypothetical protein; hypothetical protein 1010857..1011603 Nocardioides sp. JS614 4597495 YP_922173.1 CDS Noca_0963 NC_008699.1 1011697 1012083 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sma:SAV785 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase complement(1011697..1012083) Nocardioides sp. JS614 4597496 YP_922174.1 CDS Noca_0964 NC_008699.1 1012147 1013484 R PFAM: ABC-1 domain protein; KEGG: sma:SAV3068 ABC transporter ATP-binding protein; hypothetical protein complement(1012147..1013484) Nocardioides sp. JS614 4597497 YP_922175.1 CDS Noca_0965 NC_008699.1 1013579 1015165 D PFAM: FAD dependent oxidoreductase; KEGG: sco:SCO7388 dehydrogenase; FAD dependent oxidoreductase 1013579..1015165 Nocardioides sp. JS614 4597498 YP_922176.1 CDS Noca_0966 NC_008699.1 1015173 1015643 R KEGG: cgb:cg1735 secreted cell wall-associated hydrolase (invasion-associated protein); hypothetical protein complement(1015173..1015643) Nocardioides sp. JS614 4597499 YP_922177.1 CDS Noca_0967 NC_008699.1 1015750 1016076 R PFAM: PspC domain protein; KEGG: sco:SCO4903 hypothetical protein; PspC domain-containing protein complement(1015750..1016076) Nocardioides sp. JS614 4597500 YP_922178.1 CDS Noca_0968 NC_008699.1 1016240 1017004 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fal:FRAAL1681 putative ABC transporter, ATP-binding protein; ABC transporter-like protein 1016240..1017004 Nocardioides sp. JS614 4597501 YP_922179.1 CDS Noca_0969 NC_008699.1 1017010 1019430 D PFAM: protein of unknown function DUF214; KEGG: fal:FRAAL1680 hypothetical protein; putative membrane protein; putative HPr serine phosphorylation domain; hypothetical protein 1017010..1019430 Nocardioides sp. JS614 4597502 YP_922180.1 CDS Noca_0970 NC_008699.1 1019458 1019814 R PFAM: DGPFAETKE family protein; KEGG: rha:RHA1_ro00578 hypothetical protein; DGPFAETKE family protein complement(1019458..1019814) Nocardioides sp. JS614 4597503 YP_922181.1 CDS Noca_0971 NC_008699.1 1019946 1020578 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ret:RHE_CH02466 hypothetical protein; type 12 methyltransferase 1019946..1020578 Nocardioides sp. JS614 4597504 YP_922182.1 CDS Noca_0972 NC_008699.1 1020598 1021725 R PFAM: secretory lipase; KEGG: rha:RHA1_ro01045 hypothetical protein; secretory lipase complement(1020598..1021725) Nocardioides sp. JS614 4597505 YP_922183.1 CDS Noca_0973 NC_008699.1 1021857 1022483 D PFAM: regulatory protein, TetR; KEGG: rme:Rmet_5057 transcriptional regulator, TetR family; regulatory protein TetR 1021857..1022483 Nocardioides sp. JS614 4597506 YP_922184.1 CDS Noca_0974 NC_008699.1 1022550 1023194 R KEGG: cya:CYA_0467 methionine-S-sulfoxide reductase; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; peptide methionine sulfoxide reductase complement(1022550..1023194) Nocardioides sp. JS614 4599750 YP_922185.1 CDS Noca_0976 NC_008699.1 1024210 1025373 D PFAM: aminotransferase, class V; Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: tfu:Tfu_0440 cystathionine gamma-synthase; cystathionine gamma-lyase 1024210..1025373 Nocardioides sp. JS614 4599752 YP_922186.1 CDS Noca_0977 NC_008699.1 1025396 1026727 D KEGG: dsy:DSY3235 hypothetical protein; hypothetical protein 1025396..1026727 Nocardioides sp. JS614 4599753 YP_922187.1 CDS Noca_0978 NC_008699.1 1026737 1028095 D PFAM: protein of unknown function UPF0118; KEGG: lxx:Lxx16910 integral membrane protein; hypothetical protein 1026737..1028095 Nocardioides sp. JS614 4599754 YP_922188.1 CDS Noca_0979 NC_008699.1 1028088 1029302 D catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase 1028088..1029302 Nocardioides sp. JS614 4599755 YP_922189.1 CDS Noca_0980 NC_008699.1 1029313 1029816 R TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: tfu:Tfu_0447 prokaryotic transcription elongation factor GreA; transcription elongation factor GreA complement(1029313..1029816) Nocardioides sp. JS614 4599756 YP_922190.1 CDS Noca_0981 NC_008699.1 1030444 1031373 D PFAM: LmbE family protein; KEGG: tfu:Tfu_0449 hypothetical protein; LmbE family protein 1030444..1031373 Nocardioides sp. JS614 4599757 YP_922191.1 CDS Noca_0982 NC_008699.1 1031414 1031674 D hypothetical protein 1031414..1031674 Nocardioides sp. JS614 4599758 YP_922192.1 CDS Noca_0983 NC_008699.1 1031694 1032296 R PFAM: thiopurine S-methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: fal:FRAAL2901 putative methyltransferase; type 12 methyltransferase complement(1031694..1032296) Nocardioides sp. JS614 4599759 YP_922193.1 CDS Noca_0985 NC_008699.1 1033291 1034013 R KEGG: rha:RHA1_ro00065 hypothetical protein; hypothetical protein complement(1033291..1034013) Nocardioides sp. JS614 4599761 YP_922194.1 CDS Noca_0986 NC_008699.1 1034213 1034914 R KEGG: gvi:glr0185 hypothetical protein; hypothetical protein complement(1034213..1034914) Nocardioides sp. JS614 4599762 YP_922195.1 CDS Noca_0987 NC_008699.1 1034970 1037663 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase complement(1034970..1037663) Nocardioides sp. JS614 4599763 YP_922196.1 CDS Noca_0988 NC_008699.1 1037817 1038731 D PFAM: UspA domain protein; KEGG: tfu:Tfu_3032 hypothetical protein; UspA domain-containing protein 1037817..1038731 Nocardioides sp. JS614 4599764 YP_922197.1 CDS Noca_0989 NC_008699.1 1038869 1039771 R PFAM: UspA domain protein; KEGG: rha:RHA1_ro00021 probable universal stress protein; UspA domain-containing protein complement(1038869..1039771) Nocardioides sp. JS614 4599765 YP_922198.1 CDS Noca_0990 NC_008699.1 1039896 1040924 R KEGG: nfa:nfa28960 hypothetical protein; hypothetical protein complement(1039896..1040924) Nocardioides sp. JS614 4599766 YP_922199.1 CDS Noca_0991 NC_008699.1 1041028 1041618 R PFAM: CBS domain containing protein; KEGG: mmc:Mmcs_5097 putative signal-transduction protein with CBS domains; hypothetical protein complement(1041028..1041618) Nocardioides sp. JS614 4599767 YP_922200.1 CDS Noca_0992 NC_008699.1 1041802 1042458 D PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: fra:Francci3_3253 two component transcriptional regulator, LuxR family; regulatory protein LuxR 1041802..1042458 Nocardioides sp. JS614 4599768 YP_922201.1 CDS Noca_0993 NC_008699.1 1042493 1042915 R KEGG: sma:SAV1271 putative DNA-binding protein; putative DNA-binding protein complement(1042493..1042915) Nocardioides sp. JS614 4599769 YP_922202.1 CDS Noca_0994 NC_008699.1 1043105 1044838 D PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: tfu:Tfu_3046 GAF:ATP-binding region, ATPase-like; GAF domain-containing protein 1043105..1044838 Nocardioides sp. JS614 4599770 YP_922203.1 CDS Noca_0995 NC_008699.1 1044950 1045555 R KEGG: fra:Francci3_1002 hypothetical protein; hypothetical protein complement(1044950..1045555) Nocardioides sp. JS614 4599771 YP_922204.1 CDS Noca_0996 NC_008699.1 1045785 1046675 D PFAM: UspA domain protein; KEGG: mpa:MAP1742c hypothetical protein; UspA domain-containing protein 1045785..1046675 Nocardioides sp. JS614 4599772 YP_922205.1 CDS Noca_0997 NC_008699.1 1047004 1047924 D PFAM: UspA domain protein; KEGG: rha:RHA1_ro02263 possible universal stress protein; UspA domain-containing protein 1047004..1047924 Nocardioides sp. JS614 4599773 YP_922206.1 CDS Noca_0998 NC_008699.1 1047921 1050455 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: ade:Adeh_0468 cation transporting P-type ATPase; P-type HAD superfamily ATPase 1047921..1050455 Nocardioides sp. JS614 4599774 YP_922207.1 CDS Noca_0999 NC_008699.1 1050421 1050828 R KEGG: pac:PPA1465 hypothetical protein; hypothetical protein complement(1050421..1050828) Nocardioides sp. JS614 4599775 YP_922208.1 CDS Noca_1000 NC_008699.1 1050977 1051858 D PFAM: UspA domain protein; KEGG: mmc:Mmcs_0719 UspA; UspA domain-containing protein 1050977..1051858 Nocardioides sp. JS614 4599776 YP_922209.1 CDS Noca_1001 NC_008699.1 1051979 1053361 D PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: mfa:Mfla_1382 beta-lactamase-like protein; beta-lactamase domain-containing protein 1051979..1053361 Nocardioides sp. JS614 4599777 YP_922210.1 CDS Noca_1002 NC_008699.1 1053491 1053925 D KEGG: cef:CE2430 hypothetical protein; hypothetical protein 1053491..1053925 Nocardioides sp. JS614 4599778 YP_922211.1 CDS Noca_1003 NC_008699.1 1053935 1054954 R PFAM: fructose-bisphosphate aldolase, class-I; KEGG: bxe:Bxe_B1334 fructose-bisphosphate aldolase; fructose-bisphosphate aldolase complement(1053935..1054954) Nocardioides sp. JS614 4599779 YP_922212.1 CDS Noca_1004 NC_008699.1 1055294 1057945 D PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: tfu:Tfu_1311 hypothetical protein; N-acetyltransferase GCN5 1055294..1057945 Nocardioides sp. JS614 4599780 YP_922213.1 CDS Noca_1005 NC_008699.1 1058042 1058923 D PFAM: UspA domain protein; KEGG: mpa:MAP1742c hypothetical protein; UspA domain-containing protein 1058042..1058923 Nocardioides sp. JS614 4599781 YP_922214.1 CDS Noca_1006 NC_008699.1 1059033 1060097 D PFAM: PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: xcv:XCV1708 histidine kinase-response regulator hybrid protein; PAS domain-containing protein 1059033..1060097 Nocardioides sp. JS614 4599782 YP_922215.1 CDS Noca_1007 NC_008699.1 1060410 1061327 R PFAM: phosphoesterase; KEGG: sma:SAV5971 secreted acid phosphatase; phosphoesterase complement(1060410..1061327) Nocardioides sp. JS614 4599783 YP_922216.1 CDS Noca_1008 NC_008699.1 1061338 1061739 R PFAM: regulatory proteins, IclR; KEGG: mmc:Mmcs_1697 regulatory proteins, IclR; regulatory proteins IclR complement(1061338..1061739) Nocardioides sp. JS614 4599784 YP_922217.1 CDS Noca_1011 NC_008699.1 1063015 1064223 D TIGRFAM: 4-carboxymuconolactone decarboxylase; PFAM: alpha/beta hydrolase fold; Carboxymuconolactone decarboxylase; KEGG: mmc:Mmcs_1701 4-carboxymuconolactone decarboxylase; 4-carboxymuconolactone decarboxylase 1063015..1064223 Nocardioides sp. JS614 4599672 YP_922218.1 CDS Noca_1012 NC_008699.1 1064286 1065203 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: mmc:Mmcs_1366 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1064286..1065203) Nocardioides sp. JS614 4599673 YP_922219.1 CDS Noca_1013 NC_008699.1 1065288 1066502 D KEGG: nfa:nfa35170 putative ayl-CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; acetyl-CoA acetyltransferase 1065288..1066502 Nocardioides sp. JS614 4599674 YP_922220.1 CDS Noca_1014 NC_008699.1 1066499 1067158 D KEGG: mmc:Mmcs_1702 3-oxoacid CoA-transferase, subunit A; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 1066499..1067158 Nocardioides sp. JS614 4599675 YP_922221.1 CDS Noca_1015 NC_008699.1 1067155 1067805 D KEGG: mmc:Mmcs_1703 3-oxoacid CoA-transferase, subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; butyryl-CoA:acetate CoA transferase 1067155..1067805 Nocardioides sp. JS614 4599676 YP_922222.1 CDS Noca_1016 NC_008699.1 1067855 1069027 D PFAM: cysteinyl-tRNA synthetase, class Ia; KEGG: tfu:Tfu_1832 cysteine--tRNA ligase; cysteine--tRNA ligase 1067855..1069027 Nocardioides sp. JS614 4599677 YP_922223.1 CDS Noca_1017 NC_008699.1 1069206 1070129 D KEGG: mmc:Mmcs_1202 hypothetical protein; hypothetical protein 1069206..1070129 Nocardioides sp. JS614 4599678 YP_922224.1 CDS Noca_1018 NC_008699.1 1070265 1070426 R hypothetical protein complement(1070265..1070426) Nocardioides sp. JS614 4599679 YP_922225.1 CDS Noca_1019 NC_008699.1 1070611 1071789 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: sma:SAV4680 two-component system sensor kinase; histidine kinase, dimerisation and phosphoacceptor region 1070611..1071789 Nocardioides sp. JS614 4599680 YP_922226.1 CDS Noca_1020 NC_008699.1 1071786 1072442 D PFAM: regulatory protein, LuxR; response regulator receiver; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: nfa:nfa42530 putative two-component system response regulator; response regulator receiver 1071786..1072442 Nocardioides sp. JS614 4599681 YP_922227.1 CDS Noca_1021 NC_008699.1 1072579 1073475 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tfu:Tfu_1436 ABC-type multidrug transport system ATPase component; ABC transporter-like protein 1072579..1073475 Nocardioides sp. JS614 4599682 YP_922228.1 CDS Noca_1022 NC_008699.1 1073472 1074269 D KEGG: mmc:Mmcs_0550 putative ABC transporter membrane protein; hypothetical protein 1073472..1074269 Nocardioides sp. JS614 4599683 YP_922229.1 CDS Noca_1023 NC_008699.1 1074398 1074589 D PFAM: protein of unknown function DUF255; KEGG: tfu:Tfu_0451 conserved hypothetical protein; hypothetical protein 1074398..1074589 Nocardioides sp. JS614 4599684 YP_922230.1 CDS Noca_1024 NC_008699.1 1074888 1076126 D PFAM: transposase IS116/IS110/IS902 family protein; KEGG: rha:RHA1_ro01400 probable transposase; transposase IS116/IS110/IS902 family protein 1074888..1076126 Nocardioides sp. JS614 4599685 YP_922231.1 CDS Noca_1025 NC_008699.1 1076420 1077298 R hypothetical protein complement(1076420..1077298) Nocardioides sp. JS614 4599686 YP_922232.1 CDS Noca_1026 NC_008699.1 1077424 1078047 R KEGG: cef:CE0046 hypothetical protein; hypothetical protein complement(1077424..1078047) Nocardioides sp. JS614 4599687 YP_922233.1 CDS Noca_1027 NC_008699.1 1078861 1081236 R KEGG: hch:HCH_06379 hypothetical protein; hypothetical protein complement(1078861..1081236) Nocardioides sp. JS614 4599688 YP_922234.1 CDS Noca_1028 NC_008699.1 1081693 1082502 R PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: mbu:Mbur_1610 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase complement(1081693..1082502) Nocardioides sp. JS614 4599689 YP_922235.1 CDS Noca_1029 NC_008699.1 1082495 1084246 R PFAM: AAA ATPase, central domain protein; KEGG: tde:TDE1329 ATPase, AAA family; ATPase central domain-containing protein complement(1082495..1084246) Nocardioides sp. JS614 4599690 YP_922236.1 CDS Noca_1030 NC_008699.1 1084243 1084959 R hypothetical protein complement(1084243..1084959) Nocardioides sp. JS614 4599691 YP_922237.1 CDS Noca_1031 NC_008699.1 1084987 1086417 R hypothetical protein complement(1084987..1086417) Nocardioides sp. JS614 4599692 YP_922238.1 CDS Noca_1032 NC_008699.1 1086476 1087444 R hypothetical protein complement(1086476..1087444) Nocardioides sp. JS614 4599693 YP_922239.1 CDS Noca_1033 NC_008699.1 1087473 1088348 R PFAM: aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; KEGG: tac:Ta0575 probable aspartate carbamoyltransferase, catalytic chain; aspartate carbamoyltransferase complement(1087473..1088348) Nocardioides sp. JS614 4599694 YP_922240.1 CDS Noca_1034 NC_008699.1 1088345 1089472 R PFAM: Radical SAM domain protein; KEGG: rpe:RPE_3191 radical SAM domain protein; radical SAM domain-containing protein complement(1088345..1089472) Nocardioides sp. JS614 4599695 YP_922241.1 CDS Noca_1035 NC_008699.1 1089560 1090240 D PFAM: nitroreductase; KEGG: sth:STH638 nitroreductase; nitroreductase 1089560..1090240 Nocardioides sp. JS614 4599696 YP_922242.1 CDS Noca_1036 NC_008699.1 1090247 1091014 R hypothetical protein complement(1090247..1091014) Nocardioides sp. JS614 4599697 YP_922243.1 CDS Noca_1037 NC_008699.1 1091016 1093673 R PFAM: pentapeptide repeat protein; pentapeptide repeat-containing protein complement(1091016..1093673) Nocardioides sp. JS614 4599698 YP_922244.1 CDS Noca_1038 NC_008699.1 1093670 1095688 R hypothetical protein complement(1093670..1095688) Nocardioides sp. JS614 4599699 YP_922245.1 CDS Noca_1039 NC_008699.1 1095685 1097034 R PFAM: protein of unknown function DUF201; hypothetical protein complement(1095685..1097034) Nocardioides sp. JS614 4599700 YP_922246.1 CDS Noca_1040 NC_008699.1 1097031 1097981 R hypothetical protein complement(1097031..1097981) Nocardioides sp. JS614 4599701 YP_922247.1 CDS Noca_1041 NC_008699.1 1098217 1099443 D hypothetical protein 1098217..1099443 Nocardioides sp. JS614 4599702 YP_922248.1 CDS Noca_1042 NC_008699.1 1099509 1100573 D KEGG: sco:SCO2693 oxygenase (secreted protein); oxygenase 1099509..1100573 Nocardioides sp. JS614 4599703 YP_922249.1 CDS Noca_1043 NC_008699.1 1100570 1101388 D hypothetical protein 1100570..1101388 Nocardioides sp. JS614 4599704 YP_922250.1 CDS Noca_1044 NC_008699.1 1101818 1102126 R hypothetical protein complement(1101818..1102126) Nocardioides sp. JS614 4599705 YP_922251.1 CDS Noca_1045 NC_008699.1 1102354 1103046 D KEGG: mmc:Mmcs_0815 hypothetical protein; phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase-like protein 1102354..1103046 Nocardioides sp. JS614 4599706 YP_922252.1 CDS Noca_1047 NC_008699.1 1103719 1104951 D hypothetical protein 1103719..1104951 Nocardioides sp. JS614 4599708 YP_922253.1 CDS Noca_1048 NC_008699.1 1104941 1105687 R PFAM: phage Gp37Gp68 family protein; KEGG: mbo:Mb2753 hypothetical protein; phage Gp37Gp68 family protein complement(1104941..1105687) Nocardioides sp. JS614 4599654 YP_922254.1 CDS Noca_1049 NC_008699.1 1105779 1106060 D hypothetical protein 1105779..1106060 Nocardioides sp. JS614 4599655 YP_922255.1 CDS Noca_1050 NC_008699.1 1106236 1107102 D hypothetical protein 1106236..1107102 Nocardioides sp. JS614 4599656 YP_922256.1 CDS Noca_1051 NC_008699.1 1107113 1108519 R KEGG: pfl:PFL_4977 site-specific recombinase, phage integrase family; hypothetical protein complement(1107113..1108519) Nocardioides sp. JS614 4599657 YP_922257.1 CDS Noca_1052 NC_008699.1 1108659 1110617 D PFAM: protein of unknown function DUF255; KEGG: fra:Francci3_3900 protein of unknown function DUF255; hypothetical protein 1108659..1110617 Nocardioides sp. JS614 4599658 YP_922258.1 CDS Noca_1053 NC_008699.1 1110758 1112275 D PFAM: aldehyde dehydrogenase; KEGG: fal:FRAAL4279 putative aldehyde dehydrogenase; aldehyde dehydrogenase 1110758..1112275 Nocardioides sp. JS614 4599659 YP_922259.1 CDS Noca_1054 NC_008699.1 1112319 1113218 R PFAM: alpha/beta hydrolase fold; KEGG: mmc:Mmcs_0140 acylglycerol lipase; alpha/beta hydrolase fold protein complement(1112319..1113218) Nocardioides sp. JS614 4599660 YP_922260.1 CDS Noca_1055 NC_008699.1 1113257 1114021 R PFAM: Hly-III family protein; KEGG: sco:SCO4978 putative integral membrane protein; Hly-III family protein complement(1113257..1114021) Nocardioides sp. JS614 4599661 YP_922261.1 CDS Noca_1056 NC_008699.1 1114149 1114925 D KEGG: tfu:Tfu_0456 di-trans-poly-cis-decaprenylcistransferase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl pyrophosphate synthetase 1114149..1114925 Nocardioides sp. JS614 4599662 YP_922262.1 CDS Noca_1057 NC_008699.1 1115277 1116677 D PFAM: PhoH family protein; SMART: Nucleotide binding protein, PINc; KEGG: sma:SAV3236 putative ATP-binding protein; PhoH family protein 1115277..1116677 Nocardioides sp. JS614 4599663 YP_922263.1 CDS Noca_1058 NC_008699.1 1116992 1117660 D KEGG: tfu:Tfu_0458 secreted protein; secreted protein 1116992..1117660 Nocardioides sp. JS614 4599664 YP_922264.1 CDS fumC NC_008699.1 1117666 1119063 R class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase complement(1117666..1119063) Nocardioides sp. JS614 4599665 YP_922265.1 CDS Noca_1060 NC_008699.1 1119060 1119743 R KEGG: sma:SAV2969 hypothetical protein; hypothetical protein complement(1119060..1119743) Nocardioides sp. JS614 4599666 YP_922266.1 CDS Noca_1061 NC_008699.1 1119973 1121688 R TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: nfa:nfa32060 putative fumarate hydratase; fumarase complement(1119973..1121688) Nocardioides sp. JS614 4599667 YP_922267.1 CDS Noca_1062 NC_008699.1 1121726 1122346 D PFAM: protein of unknown function DUF1707; KEGG: sma:SAV5183 hypothetical protein; hypothetical protein 1121726..1122346 Nocardioides sp. JS614 4599668 YP_922268.1 CDS Noca_1063 NC_008699.1 1122469 1123551 D PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sco:SCO4240 ABC transporter ATP-binding protein; ABC transporter-like protein 1122469..1123551 Nocardioides sp. JS614 4599669 YP_922269.1 CDS Noca_1064 NC_008699.1 1123642 1124535 R PFAM: alpha/beta hydrolase fold; KEGG: rpc:RPC_1656 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(1123642..1124535) Nocardioides sp. JS614 4599544 YP_922270.1 CDS Noca_1065 NC_008699.1 1124718 1125563 D PFAM: PGAP1 family protein; KEGG: sus:Acid_1787 PGAP1 family protein; PGAP1 family protein 1124718..1125563 Nocardioides sp. JS614 4599545 YP_922271.1 CDS glpX NC_008699.1 1125528 1126547 R type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II complement(1125528..1126547) Nocardioides sp. JS614 4599546 YP_922272.1 CDS Noca_1067 NC_008699.1 1126577 1127617 R PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase; KEGG: mmc:Mmcs_2797 ABC transporter related; ABC transporter-like protein complement(1126577..1127617) Nocardioides sp. JS614 4599547 YP_922273.1 CDS Noca_1068 NC_008699.1 1127614 1128381 R TIGRFAM: NifC-like ABC-type porter; molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rha:RHA1_ro03637 probable ABC molybdenum transporter, permease protein; NifC-like ABC-type porter complement(1127614..1128381) Nocardioides sp. JS614 4599548 YP_922274.1 CDS Noca_1069 NC_008699.1 1128389 1129147 R TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: mmc:Mmcs_0045 molybdenum ABC transporter, periplasmic molybdate-binding protein; molybdenum ABC transporter, periplasmic molybdate-binding protein complement(1128389..1129147) Nocardioides sp. JS614 4599549 YP_922275.1 CDS Noca_1070 NC_008699.1 1129144 1129536 R TIGRFAM: DNA binding domain, excisionase family; PFAM: regulatory protein, MerR; TOBE domain protein; KEGG: fal:FRAAL6311 molybdenum binding protein; DNA binding domain-containing protein complement(1129144..1129536) Nocardioides sp. JS614 4599550 YP_922276.1 CDS Noca_1071 NC_008699.1 1129765 1130328 D hypothetical protein 1129765..1130328 Nocardioides sp. JS614 4599551 YP_922277.1 CDS Noca_1072 NC_008699.1 1130387 1132564 R TIGRFAM: conserved repeat domain; KEGG: cel:H02F09.3 Hypothetical protein H02F09.3; hypothetical protein complement(1130387..1132564) Nocardioides sp. JS614 4599552 YP_922278.1 CDS Noca_1073 NC_008699.1 1132790 1133023 R TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit; KEGG: sma:SAV3212 putative exoribonuclease small subunit; exodeoxyribonuclease VII small subunit complement(1132790..1133023) Nocardioides sp. JS614 4599553 YP_922279.1 CDS Noca_1074 NC_008699.1 1133007 1134242 R KEGG: sco:SCO5056 putative exoribonuclease large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit; nucleic acid binding, OB-fold, tRNA/helicase-type; exodeoxyribonuclease VII large subunit complement(1133007..1134242) Nocardioides sp. JS614 4599554 YP_922280.1 CDS ispH NC_008699.1 1134319 1135383 D catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1134319..1135383 Nocardioides sp. JS614 4599555 YP_922281.1 CDS Noca_1076 NC_008699.1 1135392 1136018 D TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain; KEGG: sco:SCO7360 hypothetical protein; translation factor SUA5 1135392..1136018 Nocardioides sp. JS614 4599556 YP_922282.1 CDS Noca_1078 NC_008699.1 1136431 1137555 R PFAM: protein of unknown function DUF195; KEGG: fal:FRAAL6141 hypothetical protein; putative signal peptide; putative DNA recombination protein protein (RmuC-like ); hypothetical protein complement(1136431..1137555) Nocardioides sp. JS614 4599558 YP_922283.1 CDS Noca_1079 NC_008699.1 1137659 1138447 R TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: tfu:Tfu_0258 AP endonuclease, family 1:exodeoxyribonuclease III xth; exodeoxyribonuclease III complement(1137659..1138447) Nocardioides sp. JS614 4599559 YP_922284.1 CDS Noca_1080 NC_008699.1 1138517 1139596 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 1138517..1139596 Nocardioides sp. JS614 4599560 YP_922285.1 CDS Noca_1081 NC_008699.1 1139738 1140883 D hypothetical protein 1139738..1140883 Nocardioides sp. JS614 4599561 YP_922286.1 CDS Noca_1082 NC_008699.1 1140889 1141923 D hypothetical protein 1140889..1141923 Nocardioides sp. JS614 4599562 YP_922287.1 CDS Noca_1083 NC_008699.1 1141939 1142658 R hypothetical protein complement(1141939..1142658) Nocardioides sp. JS614 4599563 YP_922288.1 CDS Noca_1084 NC_008699.1 1142804 1143727 R hypothetical protein complement(1142804..1143727) Nocardioides sp. JS614 4599564 YP_922289.1 CDS Noca_1085 NC_008699.1 1143851 1145473 D PFAM: DNA methylase N-4/N-6 domain protein; KEGG: pen:PSEEN0753 adenine specific DNA methylase; DNA methylase N-4/N-6 domain-containing protein 1143851..1145473 Nocardioides sp. JS614 4599565 YP_922290.1 CDS Noca_1086 NC_008699.1 1145470 1147992 D PFAM: type III restriction enzyme, res subunit; KEGG: pac:PPA1612 putative type III restriction enzyme; type III restriction enzyme, res subunit 1145470..1147992 Nocardioides sp. JS614 4599566 YP_922291.1 CDS Noca_1087 NC_008699.1 1148187 1148480 R hypothetical protein complement(1148187..1148480) Nocardioides sp. JS614 4599567 YP_922292.1 CDS Noca_1088 NC_008699.1 1148506 1149189 R PFAM: Resolvase, N-terminal domain; KEGG: bcl:ABC2865 site-specific recombinase for integration and excision; resolvase domain-containing protein-containing protein complement(1148506..1149189) Nocardioides sp. JS614 4599568 YP_922293.1 CDS Noca_1089 NC_008699.1 1149566 1150267 R hypothetical protein complement(1149566..1150267) Nocardioides sp. JS614 4599569 YP_922294.1 CDS Noca_1090 NC_008699.1 1150783 1152180 R PFAM: Resolvase, N-terminal domain; Recombinase; KEGG: mmc:Mmcs_3518 recombinase; recombinase complement(1150783..1152180) Nocardioides sp. JS614 4599570 YP_922295.1 CDS Noca_1092 NC_008699.1 1153352 1153663 R PFAM: transposase IS3/IS911 family protein; KEGG: cef:CE2618 putative transposase; transposase IS3/IS911 family protein complement(1153352..1153663) Nocardioides sp. JS614 4599572 YP_922296.1 CDS Noca_1093 NC_008699.1 1153904 1154587 R hypothetical protein complement(1153904..1154587) Nocardioides sp. JS614 4599573 YP_922297.1 CDS Noca_1094 NC_008699.1 1154644 1155243 R hypothetical protein complement(1154644..1155243) Nocardioides sp. JS614 4599574 YP_922298.1 CDS Noca_1095 NC_008699.1 1155215 1156129 R KEGG: mta:Moth_2233 hypothetical protein; hypothetical protein complement(1155215..1156129) Nocardioides sp. JS614 4599575 YP_922299.1 CDS Noca_1096 NC_008699.1 1156133 1157188 R KEGG: hne:HNE_2537 hypothetical protein; hypothetical protein complement(1156133..1157188) Nocardioides sp. JS614 4599576 YP_922300.1 CDS Noca_1097 NC_008699.1 1157175 1157726 R PFAM: ExsB family protein; KEGG: mta:Moth_2235 ExsB; ExsB family protein complement(1157175..1157726) Nocardioides sp. JS614 4599577 YP_922301.1 CDS Noca_1098 NC_008699.1 1157792 1158532 R PFAM: Radical SAM domain protein; KEGG: fra:Francci3_1753 radical SAM; radical SAM domain-containing protein complement(1157792..1158532) Nocardioides sp. JS614 4599578 YP_922302.1 CDS Noca_1099 NC_008699.1 1158516 1158872 R PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: tma:TM0038 6-pyruvoyltetrahydropterin synthase; putative 6-pyruvoyl tetrahydropterin synthase complement(1158516..1158872) Nocardioides sp. JS614 4599579 YP_922303.1 CDS Noca_1100 NC_008699.1 1159085 1160236 R PFAM: phage integrase family protein; KEGG: mmc:Mmcs_4828 phage integrase; phage integrase family protein complement(1159085..1160236) Nocardioides sp. JS614 4599580 YP_922304.1 CDS Noca_1101 NC_008699.1 1160302 1161252 D PFAM: helix-turn-helix domain protein; KEGG: fra:Francci3_0807 transcriptional regulator, XRE family; helix-turn-helix domain-containing protein 1160302..1161252 Nocardioides sp. JS614 4599581 YP_922305.1 CDS Noca_1102 NC_008699.1 1161255 1163873 R KEGG: mmc:Mmcs_1430 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member-like protein; exonuclease V subunit alpha complement(1161255..1163873) Nocardioides sp. JS614 4599355 YP_922306.1 CDS Noca_1103 NC_008699.1 1164146 1166326 D PFAM: protein of unknown function DUF262; protein of unknown function DUF1524 RloF; KEGG: nar:Saro_0260 protein of unknown function DUF1524 RloF; hypothetical protein 1164146..1166326 Nocardioides sp. JS614 4599356 YP_922307.1 CDS Noca_1104 NC_008699.1 1166348 1167907 D TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: xfa:XF2728 type I restriction-modification system DNA methylase; type I restriction-modification system, M subunit 1166348..1167907 Nocardioides sp. JS614 4599357 YP_922308.1 CDS Noca_1105 NC_008699.1 1167904 1168581 D PFAM: restriction modification system DNA specificity domain; KEGG: xfa:XF2726 type I restriction-modification system specificity determinant; restriction modification system DNA specificity subunit 1167904..1168581 Nocardioides sp. JS614 4599358 YP_922309.1 CDS Noca_1106 NC_008699.1 1168614 1169099 D PFAM: restriction modification system DNA specificity domain; KEGG: hpa:HPAG1_0832 HP0790-like protein; restriction modification system DNA specificity subunit 1168614..1169099 Nocardioides sp. JS614 4599359 YP_922310.1 CDS Noca_1107 NC_008699.1 1169096 1172137 D KEGG: xfa:XF2725 type I restriction-modification system endonuclease; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; HsdR family type I site-specific deoxyribonuclease 1169096..1172137 Nocardioides sp. JS614 4599360 YP_922311.1 CDS Noca_1108 NC_008699.1 1172262 1172468 D KEGG: vvy:VV1848 hypothetical protein; hypothetical protein 1172262..1172468 Nocardioides sp. JS614 4599361 YP_922312.1 CDS Noca_1109 NC_008699.1 1172667 1172927 D hypothetical protein 1172667..1172927 Nocardioides sp. JS614 4599362 YP_922313.1 CDS Noca_1110 NC_008699.1 1172980 1173759 D hypothetical protein 1172980..1173759 Nocardioides sp. JS614 4599363 YP_922314.1 CDS Noca_1111 NC_008699.1 1174217 1175203 R KEGG: pae:PA1915 hypothetical protein; hypothetical protein complement(1174217..1175203) Nocardioides sp. JS614 4599364 YP_922315.1 CDS Noca_1112 NC_008699.1 1175367 1175762 D hypothetical protein 1175367..1175762 Nocardioides sp. JS614 4599365 YP_922316.1 CDS Noca_1113 NC_008699.1 1175846 1177267 D PFAM: FAD dependent oxidoreductase; KEGG: tfu:Tfu_2058 hypothetical protein; FAD dependent oxidoreductase 1175846..1177267 Nocardioides sp. JS614 4599366 YP_922317.1 CDS Noca_1114 NC_008699.1 1177372 1178850 D PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; KEGG: pfl:PFL_5732 cytosine/purine/uracil/thiamine/allantoin permease family protein; cytosine/purines uracil thiamine allantoin permease 1177372..1178850 Nocardioides sp. JS614 4599367 YP_922318.1 CDS Noca_1115 NC_008699.1 1178931 1180451 D PFAM: aldehyde dehydrogenase; KEGG: mlo:mlr4198 aldehyde dehydrogenase; betaine-aldehyde dehydrogenase 1178931..1180451 Nocardioides sp. JS614 4599368 YP_922319.1 CDS Noca_1116 NC_008699.1 1180451 1181899 D PFAM: aldehyde dehydrogenase; KEGG: mes:Meso_4451 aldehyde dehydrogenase; succinate semialdehyde dehydrogenase 1180451..1181899 Nocardioides sp. JS614 4599369 YP_922320.1 CDS Noca_1117 NC_008699.1 1181997 1184540 R PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: mca:MCA1204 sensory box histidine kinase/response regulator; ATPase domain-containing protein complement(1181997..1184540) Nocardioides sp. JS614 4599370 YP_922321.1 CDS Noca_1118 NC_008699.1 1184642 1185376 R TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sco:SCO5621 RNA polymerase sigma factor WhiG; FliA/WhiG family RNA polymerase sigma factor complement(1184642..1185376) Nocardioides sp. JS614 4599371 YP_922322.1 CDS Noca_1119 NC_008699.1 1185426 1187435 R PFAM: peptidase M23B; peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins; KEGG: tfu:Tfu_0368 hypothetical protein; peptidase M23B complement(1185426..1187435) Nocardioides sp. JS614 4599372 YP_922323.1 CDS Noca_1120 NC_008699.1 1187446 1187769 R KEGG: bps:BPSS1265 hypothetical protein; hypothetical protein complement(1187446..1187769) Nocardioides sp. JS614 4599373 YP_922324.1 CDS Noca_1121 NC_008699.1 1187847 1188269 R KEGG: sat:SYN_00814 tfp pilus assembly protein, major pilin; hypothetical protein complement(1187847..1188269) Nocardioides sp. JS614 4599374 YP_922325.1 CDS Noca_1122 NC_008699.1 1188521 1188991 D KEGG: eba:ebA1616 general secretion protein H; hypothetical protein 1188521..1188991 Nocardioides sp. JS614 4599375 YP_922326.1 CDS Noca_1123 NC_008699.1 1188975 1190732 D KEGG: bpm:BURPS1710b_2168 Hep_Hag family protein/haemagluttinin motif family protein/YadA-like domain protein; hypothetical protein 1188975..1190732 Nocardioides sp. JS614 4599376 YP_922327.1 CDS Noca_1124 NC_008699.1 1190729 1191379 D hypothetical protein 1190729..1191379 Nocardioides sp. JS614 4599377 YP_922328.1 CDS Noca_1125 NC_008699.1 1191382 1192818 D hypothetical protein 1191382..1192818 Nocardioides sp. JS614 4599378 YP_922329.1 CDS Noca_1126 NC_008699.1 1192909 1194201 D KEGG: rxy:Rxyl_1165 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; twitching motility protein 1192909..1194201 Nocardioides sp. JS614 4599379 YP_922330.1 CDS Noca_1127 NC_008699.1 1194192 1195427 D PFAM: type II secretion system protein; KEGG: pca:Pcar_2147 type IV pilus biogenesis protein PilC; type II secretion system protein 1194192..1195427 Nocardioides sp. JS614 4599380 YP_922331.1 CDS Noca_1128 NC_008699.1 1195424 1197115 D PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; KEGG: tte:TTE1262 predicted ATPases involved in pili biogenesis, PilB homologs; type II secretion system protein E 1195424..1197115 Nocardioides sp. JS614 4599381 YP_922332.1 CDS Noca_1129 NC_008699.1 1197119 1197619 R KEGG: sma:SAV4026 AmfC protein; hypothetical protein complement(1197119..1197619) Nocardioides sp. JS614 4599382 YP_922333.1 CDS Noca_1130 NC_008699.1 1197616 1198716 R KEGG: dra:DR0442 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; twitching motility protein complement(1197616..1198716) Nocardioides sp. JS614 4599383 YP_922334.1 CDS Noca_1131 NC_008699.1 1199060 1200211 D TIGRFAM: type IV pilus assembly protein PilM; KEGG: ade:Adeh_0641 type IV pilus assembly protein PilM; type IV pilus assembly protein PilM 1199060..1200211 Nocardioides sp. JS614 4599384 YP_922335.1 CDS Noca_1132 NC_008699.1 1200208 1200930 D PFAM: Fimbrial assembly family protein; fimbrial assembly family protein 1200208..1200930 Nocardioides sp. JS614 4599385 YP_922336.1 CDS Noca_1133 NC_008699.1 1200930 1201628 D hypothetical protein 1200930..1201628 Nocardioides sp. JS614 4599386 YP_922337.1 CDS Noca_1134 NC_008699.1 1201631 1202458 D KEGG: sus:Acid_4274 serine/threonine protein kinase; serine/threonine protein kinase 1201631..1202458 Nocardioides sp. JS614 4599387 YP_922338.1 CDS Noca_1135 NC_008699.1 1202472 1203272 D hypothetical protein 1202472..1203272 Nocardioides sp. JS614 4599388 YP_922339.1 CDS Noca_1136 NC_008699.1 1203269 1204054 D PFAM: peptidase A24A, prepilin type IV; peptidase A24A domain protein; KEGG: rxy:Rxyl_1154 peptidase A24A-like protein; peptidase A24A domain-containing protein 1203269..1204054 Nocardioides sp. JS614 4599389 YP_922340.1 CDS Noca_1137 NC_008699.1 1204275 1206440 D KEGG: mag:amb2980 hypothetical 918 kDa protein Y4LL; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; diguanylate cyclase 1204275..1206440 Nocardioides sp. JS614 4599390 YP_922341.1 CDS Noca_1138 NC_008699.1 1206404 1208887 R KEGG: rxy:Rxyl_2783 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(1206404..1208887) Nocardioides sp. JS614 4599391 YP_922342.1 CDS Noca_1139 NC_008699.1 1208957 1211608 R KEGG: gme:Gmet_0700 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(1208957..1211608) Nocardioides sp. JS614 4599392 YP_922343.1 CDS Noca_1140 NC_008699.1 1211702 1213423 D proposed role in polysaccahride synthesis; putative FAD-binding dehydrogenase 1211702..1213423 Nocardioides sp. JS614 4599315 YP_922344.1 CDS Noca_1141 NC_008699.1 1213435 1213911 R PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: sco:SCO4974 deaminase; guanine deaminase complement(1213435..1213911) Nocardioides sp. JS614 4599316 YP_922345.1 CDS Noca_1142 NC_008699.1 1213911 1214780 R PFAM: Uricase; KEGG: rha:RHA1_ro01568 urate oxidase; urate oxidase complement(1213911..1214780) Nocardioides sp. JS614 4599317 YP_922346.1 CDS Noca_1143 NC_008699.1 1214782 1215111 R PFAM: Transthyretin; KEGG: nfa:nfa52430 hypothetical protein; transthyretin complement(1214782..1215111) Nocardioides sp. JS614 4599318 YP_922347.1 CDS Noca_1144 NC_008699.1 1215108 1215599 R KEGG: rha:RHA1_ro01566 possible urate oxidase, N-terminal; putative urate oxidase, N-terminal complement(1215108..1215599) Nocardioides sp. JS614 4599319 YP_922348.1 CDS Noca_1145 NC_008699.1 1215764 1216225 D hypothetical protein 1215764..1216225 Nocardioides sp. JS614 4599320 YP_922349.1 CDS Noca_1146 NC_008699.1 1216239 1216610 R PFAM: protein of unknown function DUF202; KEGG: cgb:cg0135 putative inner membrane protein; hypothetical protein complement(1216239..1216610) Nocardioides sp. JS614 4599321 YP_922350.1 CDS Noca_1147 NC_008699.1 1216621 1218084 R hypothetical protein complement(1216621..1218084) Nocardioides sp. JS614 4599322 YP_922351.1 CDS Noca_1148 NC_008699.1 1218131 1218937 D KEGG: sma:SAV2762 hypothetical protein; hypothetical protein 1218131..1218937 Nocardioides sp. JS614 4599323 YP_922352.1 CDS Noca_1149 NC_008699.1 1219149 1222109 D KEGG: mmu:677305 hypothetical protein LOC677305; hypothetical protein 1219149..1222109 Nocardioides sp. JS614 4599324 YP_922353.1 CDS Noca_1150 NC_008699.1 1222197 1223807 R hypothetical protein complement(1222197..1223807) Nocardioides sp. JS614 4599325 YP_922354.1 CDS Noca_1151 NC_008699.1 1224034 1227153 D KEGG: csa:Csal_0055 putative hemagglutinin/hemolysin-related protein; hypothetical protein 1224034..1227153 Nocardioides sp. JS614 4599326 YP_922355.1 CDS Noca_1152 NC_008699.1 1227551 1228483 R KEGG: afm:Afu4g03440 hypothetical protein; hypothetical protein complement(1227551..1228483) Nocardioides sp. JS614 4599327 YP_922356.1 CDS Noca_1153 NC_008699.1 1228746 1229060 D KEGG: rha:RHA1_ro08006 possible growth inhibitor; putative growth inhibitor 1228746..1229060 Nocardioides sp. JS614 4599328 YP_922357.1 CDS Noca_1154 NC_008699.1 1229066 1229440 D PFAM: NUDIX hydrolase; KEGG: sma:SAV3187 putative mutT-like protein; NUDIX hydrolase 1229066..1229440 Nocardioides sp. JS614 4599329 YP_922358.1 CDS Noca_1155 NC_008699.1 1229448 1229738 D hypothetical protein 1229448..1229738 Nocardioides sp. JS614 4599330 YP_922359.1 CDS Noca_1156 NC_008699.1 1229809 1231080 D KEGG: cch:Cag_1709 hypothetical protein; hypothetical protein 1229809..1231080 Nocardioides sp. JS614 4599331 YP_922360.1 CDS Noca_1157 NC_008699.1 1231160 1232068 D PFAM: LmbE family protein; KEGG: sma:SAV3138 N-acetyl-1-D-myo-inosityl-2-amino-2-deoxy-alpha-D- glucopyranoside deacetylase; LmbE family protein 1231160..1232068 Nocardioides sp. JS614 4599332 YP_922361.1 CDS Noca_1158 NC_008699.1 1232106 1232441 D hypothetical protein 1232106..1232441 Nocardioides sp. JS614 4599333 YP_922362.1 CDS Noca_1160 NC_008699.1 1232806 1233030 R PFAM: protein of unknown function DUF433; KEGG: rpc:RPC_2760 protein of unknown function DUF433; hypothetical protein complement(1232806..1233030) Nocardioides sp. JS614 4599335 YP_922363.1 CDS Noca_1161 NC_008699.1 1233072 1234814 D PFAM: VanW family protein; KEGG: rha:RHA1_ro05201 hypothetical protein; VanW family protein 1233072..1234814 Nocardioides sp. JS614 4599336 YP_922364.1 CDS Noca_1162 NC_008699.1 1234886 1235731 D PFAM: lipase, class 2; KEGG: rxy:Rxyl_2289 lipase, class 2; lipase, class 2 1234886..1235731 Nocardioides sp. JS614 4599337 YP_922365.1 CDS Noca_1163 NC_008699.1 1235872 1236951 R PFAM: glycerate kinase; KEGG: rha:RHA1_ro02573 glycerate kinase; glycerate kinase complement(1235872..1236951) Nocardioides sp. JS614 4599338 YP_922366.1 CDS Noca_1164 NC_008699.1 1236972 1237487 R PFAM: transferase hexapeptide repeat containing protein; KEGG: rha:RHA1_ro05076 possible carbonic anhydrase; hexapaptide repeat-containing transferase complement(1236972..1237487) Nocardioides sp. JS614 4599339 YP_922367.1 CDS Noca_1165 NC_008699.1 1237502 1238530 R PFAM: cyclase family protein; KEGG: rxy:Rxyl_0352 putative cyclase; cyclase family protein complement(1237502..1238530) Nocardioides sp. JS614 4599340 YP_922368.1 CDS Noca_1166 NC_008699.1 1238590 1239645 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: mta:Moth_2268 alcohol dehydrogenase superfamily, zinc-containing; alcohol dehydrogenase 1238590..1239645 Nocardioides sp. JS614 4599341 YP_922369.1 CDS Noca_1167 NC_008699.1 1239678 1240541 D PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: sme:SMb20130 putative dehydrogenase protein; molybdopterin dehydrogenase 1239678..1240541 Nocardioides sp. JS614 4599342 YP_922370.1 CDS Noca_1168 NC_008699.1 1240538 1241059 D PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: chy:CHY_0691 2Fe-2S iron-sulfur cluster binding domain; 2Fe-2S iron-sulfur cluster binding domain-containing protein 1240538..1241059 Nocardioides sp. JS614 4599343 YP_922371.1 CDS Noca_1169 NC_008699.1 1241056 1243371 D PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: rpb:RPB_4416 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; xanthine dehydrogenase, molybdenum binding subunit apoprotein 1241056..1243371 Nocardioides sp. JS614 4599344 YP_922372.1 CDS Noca_1170 NC_008699.1 1243526 1244791 D PFAM: protein of unknown function UPF0261; KEGG: hma:rrnB0188 hypothetical protein; hypothetical protein 1243526..1244791 Nocardioides sp. JS614 4599345 YP_922373.1 CDS Noca_1172 NC_008699.1 1245549 1246484 D PFAM: protein of unknown function DUF849; KEGG: bcn:Bcen_4033 protein of unknown function DUF849; hypothetical protein 1245549..1246484 Nocardioides sp. JS614 4599347 YP_922374.1 CDS Noca_1173 NC_008699.1 1246525 1247229 D PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: mta:Moth_0073 transcriptional regulator, GntR family; GntR family transcriptional regulator 1246525..1247229 Nocardioides sp. JS614 4599348 YP_922375.1 CDS Noca_1174 NC_008699.1 1247423 1248148 D PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: sma:SAV6021 GntR-family transcriptional regulator; GntR family transcriptional regulator 1247423..1248148 Nocardioides sp. JS614 4599349 YP_922376.1 CDS Noca_1175 NC_008699.1 1248186 1249301 R PFAM: Transaldolase; KEGG: pac:PPA0454 transaldolase; transaldolase complement(1248186..1249301) Nocardioides sp. JS614 4599350 YP_922377.1 CDS Noca_1176 NC_008699.1 1249339 1250460 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rxy:Rxyl_1758 alcohol dehydrogenase, zinc-binding protein; alcohol dehydrogenase complement(1249339..1250460) Nocardioides sp. JS614 4599351 YP_922378.1 CDS Noca_1177 NC_008699.1 1250472 1251278 R PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: afu:AF1207 2-deoxy-D-gluconate 3-dehydrogenase (KduD); short-chain dehydrogenase/reductase SDR complement(1250472..1251278) Nocardioides sp. JS614 4599352 YP_922379.1 CDS Noca_1178 NC_008699.1 1251311 1252183 R PFAM: beta-lactamase domain protein; KEGG: sco:SCO5091 cyclase; beta-lactamase domain-containing protein complement(1251311..1252183) Nocardioides sp. JS614 4599353 YP_922380.1 CDS Noca_1179 NC_008699.1 1252578 1253498 D PFAM: inner-membrane translocator; KEGG: hma:rrnAC2468 branched chain amino acid transporter permease protein; inner-membrane translocator 1252578..1253498 Nocardioides sp. JS614 4599354 YP_922381.1 CDS Noca_1180 NC_008699.1 1253503 1254444 D PFAM: inner-membrane translocator; KEGG: csa:Csal_1419 inner-membrane translocator; inner-membrane translocator 1253503..1254444 Nocardioides sp. JS614 4599280 YP_922382.1 CDS Noca_1181 NC_008699.1 1254437 1255249 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tfu:Tfu_1184 branched-chain amino acid transport system ATP-binding protein; ABC transporter-like protein 1254437..1255249 Nocardioides sp. JS614 4599281 YP_922383.1 CDS Noca_1182 NC_008699.1 1255242 1255952 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_4428 ABC transporter related; ABC transporter-like protein 1255242..1255952 Nocardioides sp. JS614 4599282 YP_922384.1 CDS Noca_1183 NC_008699.1 1255989 1257335 D KEGG: bpa:BPP2107 putative ABC transport system, solute-binding protein; ABC-type branched-chain amino acid transport systems periplasmic component-like 1255989..1257335 Nocardioides sp. JS614 4599283 YP_922385.1 CDS Noca_1184 NC_008699.1 1257501 1259279 D PFAM: PEP-utilising enzyme, mobile region; KEGG: bsu:BG14114 similar to pyruvate,water dikinase; PEP-utilizing protein 1257501..1259279 Nocardioides sp. JS614 4599284 YP_922386.1 CDS Noca_1185 NC_008699.1 1259324 1260151 D PFAM: pyruvate phosphate dikinase, PEP/pyruvate-binding; KEGG: mka:MK0252 phosphoenolpyruvate synthase/pyruvate phosphate dikinase; pyruvate, water dikinase 1259324..1260151 Nocardioides sp. JS614 4599285 YP_922387.1 CDS Noca_1186 NC_008699.1 1260194 1261036 D PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: afu:AF0091 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (HpcE-1); fumarylacetoacetate (FAA) hydrolase 1260194..1261036 Nocardioides sp. JS614 4599286 YP_922388.1 CDS Noca_1187 NC_008699.1 1261084 1261377 D PFAM: Antibiotic biosynthesis monooxygenase; KEGG: rxy:Rxyl_2236 antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 1261084..1261377 Nocardioides sp. JS614 4599287 YP_922389.1 CDS Noca_1188 NC_008699.1 1261422 1262807 D PFAM: aldehyde dehydrogenase; KEGG: rha:RHA1_ro00658 succinate-semialdehyde dehydrogenase (NAD(P)+); aldehyde dehydrogenase 1261422..1262807 Nocardioides sp. JS614 4599288 YP_922390.1 CDS Noca_1189 NC_008699.1 1262969 1264243 R PFAM: tRNA synthetase, class II (D, K and N); nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: dge:Dgeo_0796 aspartyl-tRNA synthetase; aspartyl-tRNA synthetase complement(1262969..1264243) Nocardioides sp. JS614 4599289 YP_922391.1 CDS Noca_1190 NC_008699.1 1264447 1265421 D PFAM: conserved hypothetical protein 341; KEGG: sco:SCO4737 integral membrane protein; hypothetical protein 1264447..1265421 Nocardioides sp. JS614 4599290 YP_922392.1 CDS Noca_1191 NC_008699.1 1265440 1266330 R PFAM: GCN5-related N-acetyltransferase; FR47 domain protein; KEGG: sma:SAV3130 acetyltransferase; N-acetyltransferase GCN5 complement(1265440..1266330) Nocardioides sp. JS614 4599291 YP_922393.1 CDS Noca_1192 NC_008699.1 1266443 1266769 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: sco:SCO5135 ferredoxin; 4Fe-4S ferredoxin 1266443..1266769 Nocardioides sp. JS614 4599292 YP_922394.1 CDS Noca_1193 NC_008699.1 1267033 1267890 D catalyzes the formation of N-succinyl-LL-2,6-diaminopimelate from N-succinyl-L-2-amino-6-oxopimelate in lysine biosynthesis; N-succinyldiaminopimelate aminotransferase 1267033..1267890 Nocardioides sp. JS614 4599293 YP_922395.1 CDS Noca_1194 NC_008699.1 1268023 1268985 R KEGG: sma:SAV3126 hypothetical protein; hypothetical protein complement(1268023..1268985) Nocardioides sp. JS614 4599294 YP_922396.1 CDS Noca_1195 NC_008699.1 1269039 1270001 R KEGG: rha:RHA1_ro05962 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase complement(1269039..1270001) Nocardioides sp. JS614 4599295 YP_922397.1 CDS Noca_1196 NC_008699.1 1270026 1270550 R PFAM: protein of unknown function DUF664; KEGG: sma:SAV7047 hypothetical protein; hypothetical protein complement(1270026..1270550) Nocardioides sp. JS614 4599296 YP_922398.1 CDS Noca_1197 NC_008699.1 1270657 1271232 D PFAM: protein of unknown function DUF820; KEGG: lbl:LBL_0718 hypothetical protein; hypothetical protein 1270657..1271232 Nocardioides sp. JS614 4599297 YP_922399.1 CDS ileS NC_008699.1 1271459 1274644 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase 1271459..1274644 Nocardioides sp. JS614 4599298 YP_922400.1 CDS Noca_1199 NC_008699.1 1274820 1275665 R PFAM: luciferase family protein; KEGG: mmc:Mmcs_4324 luciferase-like protein; luciferase family protein complement(1274820..1275665) Nocardioides sp. JS614 4599299 YP_922401.1 CDS Noca_1200 NC_008699.1 1275728 1276792 D catalyzes the formation of succinate and diaminoheptanedioate from succinyldiaminoheptanedioate; succinyl-diaminopimelate desuccinylase 1275728..1276792 Nocardioides sp. JS614 4599300 YP_922402.1 CDS Noca_1201 NC_008699.1 1276794 1277525 D PFAM: conserved hypothetical protein 730; KEGG: sco:SCO5140 hypothetical protein; hypothetical protein 1276794..1277525 Nocardioides sp. JS614 4599301 YP_922403.1 CDS Noca_1202 NC_008699.1 1277532 1277834 D KEGG: pac:PPA0637 hypothetical protein; hypothetical protein 1277532..1277834 Nocardioides sp. JS614 4599302 YP_922404.1 CDS Noca_1203 NC_008699.1 1277849 1278274 D hypothetical protein 1277849..1278274 Nocardioides sp. JS614 4599303 YP_922405.1 CDS Noca_1204 NC_008699.1 1278286 1279074 D PFAM: peptidase M14, carboxypeptidase A; KEGG: cya:CYA_2877 zinc carboxypeptidase; peptidase M14, carboxypeptidase A 1278286..1279074 Nocardioides sp. JS614 4599304 YP_922406.1 CDS Noca_1205 NC_008699.1 1279129 1279923 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: sma:SAV3120 putative enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase complement(1279129..1279923) Nocardioides sp. JS614 4599305 YP_922407.1 CDS Noca_1206 NC_008699.1 1279978 1280754 R PFAM: PaaX domain protein; PaaX domain protein, C-terminal domain; KEGG: sth:STH211 transcriptional regulatory protein, repressor-type; PaaX domain-containing protein, C- domain complement(1279978..1280754) Nocardioides sp. JS614 4599306 YP_922408.1 CDS Noca_1207 NC_008699.1 1281070 1282653 D PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: tfu:Tfu_0503 leucyl aminopeptidase; leucyl aminopeptidase 1281070..1282653 Nocardioides sp. JS614 4599307 YP_922409.1 CDS Noca_1208 NC_008699.1 1282650 1282988 D hypothetical protein 1282650..1282988 Nocardioides sp. JS614 4599308 YP_922410.1 CDS Noca_1209 NC_008699.1 1283111 1283608 R PFAM: O-methyltransferase, family 3; Methyltransferase type 11; KEGG: fal:FRAAL6092 methyltransferase (O-methyltransferase); O-methyltransferase family protein complement(1283111..1283608) Nocardioides sp. JS614 4599309 YP_922411.1 CDS Noca_1210 NC_008699.1 1283940 1284632 D Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in M. tuberculosis this protein is involved in heat shock, oxidative stress and virulence; RNA polymerase sigma factor SigE 1283940..1284632 Nocardioides sp. JS614 4599310 YP_922412.1 CDS Noca_1211 NC_008699.1 1284629 1285105 D hypothetical protein 1284629..1285105 Nocardioides sp. JS614 4599311 YP_922413.1 CDS Noca_1212 NC_008699.1 1285152 1286567 D PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: fra:Francci3_0069 peptidase S1 and S6, chymotrypsin/Hap; peptidase S1 and S6, chymotrypsin/Hap 1285152..1286567 Nocardioides sp. JS614 4599312 YP_922414.1 CDS Noca_1213 NC_008699.1 1286719 1286964 R TIGRFAM: DNA binding domain, excisionase family; PFAM: regulatory protein, MerR; KEGG: fra:Francci3_0771 putative transcriptional regulator; DNA binding domain-containing protein complement(1286719..1286964) Nocardioides sp. JS614 4599313 YP_922415.1 CDS Noca_1214 NC_008699.1 1287101 1287775 D KEGG: fal:FRAAL1311 hypothetical protein; putative signal peptide; putative signal peptide 1287101..1287775 Nocardioides sp. JS614 4599314 YP_922416.1 CDS Noca_1215 NC_008699.1 1287779 1289092 D KEGG: fal:FRAAL1312 hypothetical protein; hypothetical protein 1287779..1289092 Nocardioides sp. JS614 4599264 YP_922417.1 CDS Noca_1216 NC_008699.1 1289071 1290399 R KEGG: mmc:Mmcs_5112 hypothetical protein; hypothetical protein complement(1289071..1290399) Nocardioides sp. JS614 4599265 YP_922418.1 CDS Noca_1217 NC_008699.1 1290412 1290777 R KEGG: rha:RHA1_ro02410 hypothetical protein; hypothetical protein complement(1290412..1290777) Nocardioides sp. JS614 4599266 YP_922419.1 CDS Noca_1218 NC_008699.1 1290899 1292350 D PFAM: protein of unknown function UPF0089; KEGG: rha:RHA1_ro06332 hypothetical protein; diacylglycerol O-acyltransferase 1290899..1292350 Nocardioides sp. JS614 4599267 YP_922420.1 CDS Noca_1219 NC_008699.1 1292347 1292703 D KEGG: tfu:Tfu_2483 hypothetical protein; hypothetical protein 1292347..1292703 Nocardioides sp. JS614 4599268 YP_922421.1 CDS Noca_1220 NC_008699.1 1292731 1294377 D TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: tfu:Tfu_0433 delta-1-pyrroline-5-carboxylate dehydrogenase 1; delta-1-pyrroline-5-carboxylate dehydrogenase 1292731..1294377 Nocardioides sp. JS614 4599269 YP_922422.1 CDS Noca_1221 NC_008699.1 1294388 1294606 D hypothetical protein 1294388..1294606 Nocardioides sp. JS614 4599270 YP_922423.1 CDS Noca_1222 NC_008699.1 1294591 1295073 R KEGG: rha:RHA1_ro02087 hypothetical protein; hypothetical protein complement(1294591..1295073) Nocardioides sp. JS614 4599271 YP_922424.1 CDS Noca_1223 NC_008699.1 1295073 1295564 R KEGG: pac:PPA1330 hypothetical protein; hypothetical protein complement(1295073..1295564) Nocardioides sp. JS614 4599272 YP_922425.1 CDS Noca_1224 NC_008699.1 1295671 1296474 D PFAM: tryptophan 2,3-dioxygenase; KEGG: aba:Acid345_0682 tryptophan 2,3-dioxygenase; tryptophan 2,3-dioxygenase 1295671..1296474 Nocardioides sp. JS614 4599273 YP_922426.1 CDS Noca_1225 NC_008699.1 1296510 1301429 D PFAM: NAD-glutamate dehydrogenase; KEGG: sco:SCO2999 hypothetical protein; glutamate dehydrogenase 1296510..1301429 Nocardioides sp. JS614 4599274 YP_922427.1 CDS Noca_1226 NC_008699.1 1301489 1303276 D PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: mmc:Mmcs_4445 ABC transporter related; ABC transporter 1301489..1303276 Nocardioides sp. JS614 4599275 YP_922428.1 CDS Noca_1227 NC_008699.1 1303273 1305132 D PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: mmc:Mmcs_4444 ABC transporter related; ABC transporter-like protein 1303273..1305132 Nocardioides sp. JS614 4599276 YP_922429.1 CDS Noca_1228 NC_008699.1 1305288 1306688 D catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 1305288..1306688 Nocardioides sp. JS614 4599277 YP_922430.1 CDS Noca_1229 NC_008699.1 1306688 1306885 D hypothetical protein 1306688..1306885 Nocardioides sp. JS614 4599278 YP_922431.1 CDS Noca_1230 NC_008699.1 1307023 1307910 R KEGG: reu:Reut_B3920 hypothetical protein; hypothetical protein complement(1307023..1307910) Nocardioides sp. JS614 4599279 YP_922432.1 CDS Noca_1231 NC_008699.1 1307960 1308550 R PFAM: regulatory protein, TetR; KEGG: ade:Adeh_3099 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(1307960..1308550) Nocardioides sp. JS614 4599227 YP_922433.1 CDS Noca_1232 NC_008699.1 1308579 1309496 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro06221 possible dehydrogenase; short-chain dehydrogenase/reductase SDR 1308579..1309496 Nocardioides sp. JS614 4599228 YP_922434.1 CDS Noca_1233 NC_008699.1 1309598 1310359 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: fra:Francci3_0182 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(1309598..1310359) Nocardioides sp. JS614 4599229 YP_922435.1 CDS Noca_1234 NC_008699.1 1310489 1311484 R PFAM: Ku domain protein; KEGG: mpa:MAP0875c hypothetical protein; DNA end-binding protein Ku complement(1310489..1311484) Nocardioides sp. JS614 4599230 YP_922436.1 CDS Noca_1235 NC_008699.1 1311569 1312504 D PFAM: ATP dependent DNA ligase; KEGG: fal:FRAAL4382 hypothetical protein; ATP dependent DNA ligase 1311569..1312504 Nocardioides sp. JS614 4599231 YP_922437.1 CDS Noca_1236 NC_008699.1 1312504 1313226 D KEGG: sma:SAV6775 secreted protein; secreted protein 1312504..1313226 Nocardioides sp. JS614 4599232 YP_922438.1 CDS Noca_1237 NC_008699.1 1313226 1314140 D KEGG: mmc:Mmcs_4352 ATP dependent DNA ligase; ATP dependent DNA ligase 1313226..1314140 Nocardioides sp. JS614 4599233 YP_922439.1 CDS Noca_1238 NC_008699.1 1314298 1314819 D hypothetical protein 1314298..1314819 Nocardioides sp. JS614 4599234 YP_922440.1 CDS Noca_1239 NC_008699.1 1315048 1315659 D PFAM: peptidase S24, S26A and S26B; KEGG: mka:MK1031 type I signal peptidase; peptidase S24, S26A and S26B 1315048..1315659 Nocardioides sp. JS614 4599235 YP_922441.1 CDS Noca_1240 NC_008699.1 1315692 1316396 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sma:SAV3481 two-component system response regulator; response regulator receiver 1315692..1316396 Nocardioides sp. JS614 4599236 YP_922442.1 CDS Noca_1241 NC_008699.1 1316389 1317603 D PFAM: histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: tfu:Tfu_2550 ATP-binding region, ATPase-like:histidine kinase A, N-terminal; histidine kinase 1316389..1317603 Nocardioides sp. JS614 4599237 YP_922443.1 CDS Noca_1242 NC_008699.1 1317637 1318443 D TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sco:SCO2843 putative N-acetylglucosamine-6-phosphate deacetylase; HAD family hydrolase 1317637..1318443 Nocardioides sp. JS614 4599238 YP_922444.1 CDS Noca_1243 NC_008699.1 1318861 1319370 D PFAM: NLP/P60 protein; KEGG: sco:SCO1240 NLP/P60 family protein (secreted protein); NLP/P60 protein 1318861..1319370 Nocardioides sp. JS614 4599239 YP_922445.1 CDS Noca_1244 NC_008699.1 1319387 1320022 R hypothetical protein complement(1319387..1320022) Nocardioides sp. JS614 4599240 YP_922446.1 CDS Noca_1245 NC_008699.1 1320111 1320590 D hypothetical protein 1320111..1320590 Nocardioides sp. JS614 4599241 YP_922447.1 CDS Noca_1246 NC_008699.1 1320587 1321903 D KEGG: ath:At4g01985 expressed protein; hypothetical protein 1320587..1321903 Nocardioides sp. JS614 4599242 YP_922448.1 CDS Noca_1247 NC_008699.1 1322024 1323577 D Converts oxaloacetate to phosphoenolpyruvate using ATP as an energy source; oxaloacetate decarboxylase 1322024..1323577 Nocardioides sp. JS614 4599243 YP_922449.1 CDS Noca_1248 NC_008699.1 1323588 1325156 D PFAM: carboxyl transferase; KEGG: cdi:DIP0740 methylmalonyl-CoA decarboxylase, alpha-subunit; carboxyl transferase 1323588..1325156 Nocardioides sp. JS614 4599244 YP_922450.1 CDS Noca_1249 NC_008699.1 1325168 1325422 D KEGG: cdi:DIP0741 hypothetical protein; hypothetical protein 1325168..1325422 Nocardioides sp. JS614 4599245 YP_922451.1 CDS Noca_1250 NC_008699.1 1325452 1325817 D PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: cdi:DIP0742 putative decarboxylase; biotin/lipoyl attachment domain-containing protein 1325452..1325817 Nocardioides sp. JS614 4599246 YP_922452.1 CDS Noca_1251 NC_008699.1 1325946 1327439 R PFAM: Fibronectin, type III domain protein; KEGG: mbo:Mb0063 possible cellulase CelA1 (endoglucanase) (endo-1,4-beta-glucanase) (fi-cmcase) (carboxymethyl cellulase); fibronectin, type III domain-containing protein complement(1325946..1327439) Nocardioides sp. JS614 4599247 YP_922453.1 CDS Noca_1252 NC_008699.1 1327723 1329030 D PFAM: type II secretion system protein E; KEGG: fal:FRAAL1319 putative type II/type IV pathway secretion protein; type II secretion system protein E 1327723..1329030 Nocardioides sp. JS614 4599248 YP_922454.1 CDS Noca_1253 NC_008699.1 1329030 1329884 D PFAM: type II secretion system protein; KEGG: fal:FRAAL1320 hypothetical protein; type II secretion system protein 1329030..1329884 Nocardioides sp. JS614 4599249 YP_922455.1 CDS Noca_1254 NC_008699.1 1329881 1330819 D PFAM: type II secretion system protein; KEGG: fal:FRAAL1321 hypothetical protein; type II secretion system protein 1329881..1330819 Nocardioides sp. JS614 4599250 YP_922456.1 CDS Noca_1255 NC_008699.1 1330863 1331069 D KEGG: fra:Francci3_0782 hypothetical protein; hypothetical protein 1330863..1331069 Nocardioides sp. JS614 4599251 YP_922457.1 CDS Noca_1256 NC_008699.1 1331069 1331452 D PFAM: TadE family protein; KEGG: fal:FRAAL1323 hypothetical protein; TadE family protein 1331069..1331452 Nocardioides sp. JS614 4599252 YP_922458.1 CDS Noca_1257 NC_008699.1 1331449 1331913 D KEGG: fra:Francci3_0784 hypothetical protein; hypothetical protein 1331449..1331913 Nocardioides sp. JS614 4599253 YP_922459.1 CDS Noca_1258 NC_008699.1 1331900 1332349 D hypothetical protein 1331900..1332349 Nocardioides sp. JS614 4599254 YP_922460.1 CDS Noca_1259 NC_008699.1 1332360 1334564 R KEGG: bba:Bd1210 hypothetical protein; hypothetical protein complement(1332360..1334564) Nocardioides sp. JS614 4599255 YP_922461.1 CDS Noca_1260 NC_008699.1 1334655 1335149 D PFAM: Allergen V5/Tpx-1 family protein; KEGG: cac:CAC2230 uncharacterized protein of PR1 family, YkwD B.subtilis ortholog; Allergen V5/Tpx-1 family protein 1334655..1335149 Nocardioides sp. JS614 4599256 YP_922462.1 CDS Noca_1261 NC_008699.1 1335192 1335554 R hypothetical protein complement(1335192..1335554) Nocardioides sp. JS614 4599257 YP_922463.1 CDS Noca_1262 NC_008699.1 1335593 1337560 D KEGG: bxe:Bxe_A2026 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase 1335593..1337560 Nocardioides sp. JS614 4599258 YP_922464.1 CDS Noca_1263 NC_008699.1 1337547 1338395 D PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; KEGG: sma:SAV3185 magnesium or manganese-dependent protein phosphatase; response regulator receiver 1337547..1338395 Nocardioides sp. JS614 4599259 YP_922465.1 CDS Noca_1264 NC_008699.1 1338433 1339560 D TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: mpa:MAP3175c peptide chain release factor RF-2; peptide chain release factor 2 1338433..1339560 Nocardioides sp. JS614 4599260 YP_922466.1 CDS Noca_1265 NC_008699.1 1339602 1340498 D KEGG: sma:SAV1587 hypothetical protein; hypothetical protein 1339602..1340498 Nocardioides sp. JS614 4599261 YP_922467.1 CDS Noca_1266 NC_008699.1 1340525 1341166 R hypothetical protein complement(1340525..1341166) Nocardioides sp. JS614 4599262 YP_922468.1 CDS Noca_1267 NC_008699.1 1341192 1343129 D PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: dra:DR0933 alpha-amlyase; alpha amylase 1341192..1343129 Nocardioides sp. JS614 4599263 YP_922469.1 CDS Noca_1268 NC_008699.1 1343154 1343843 D KEGG: sma:SAV5104 putative cell division ATP-binding protein; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; cell division ATP-binding protein FtsE 1343154..1343843 Nocardioides sp. JS614 4598889 YP_922470.1 CDS Noca_1269 NC_008699.1 1343898 1344809 D PFAM: protein of unknown function DUF214; KEGG: pac:PPA1352 cell division protein; cell division protein FtsX 1343898..1344809 Nocardioides sp. JS614 4598890 YP_922471.1 CDS Noca_1270 NC_008699.1 1344865 1346124 D PFAM: peptidase M23B; KEGG: ava:Ava_0183 peptidase M23B; peptidase M23B 1344865..1346124 Nocardioides sp. JS614 4598891 YP_922472.1 CDS Noca_1271 NC_008699.1 1346219 1347061 D PFAM: peptidase S1 and S6, chymotrypsin/Hap; KEGG: dme:Dmel_CG4927 CG4927; peptidase S1 and S6, chymotrypsin/Hap 1346219..1347061 Nocardioides sp. JS614 4598892 YP_922473.1 CDS smpB NC_008699.1 1347172 1347651 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 1347172..1347651 Nocardioides sp. JS614 4598893 YP_922474.1 CDS Noca_1273 NC_008699.1 1347644 1348570 D PFAM: amidohydrolase 2; KEGG: nfa:nfa25480 putative amidohydrolase; amidohydrolase 2 1347644..1348570 Nocardioides sp. JS614 4598894 YP_922475.1 CDS Noca_1274 NC_008699.1 1349218 1349559 D PFAM: regulatory protein, ArsR; KEGG: mlo:mll3559 probable transcription regulator; ArsR family transcriptional regulator 1349218..1349559 Nocardioides sp. JS614 4598896 YP_922476.1 CDS Noca_1275 NC_008699.1 1349556 1350215 D PFAM: bifunctional deaminase-reductase domain protein; KEGG: fal:FRAAL4597 putative DNA binding protein; deaminase-reductase domain-containing protein 1349556..1350215 Nocardioides sp. JS614 4598897 YP_922477.1 CDS Noca_1276 NC_008699.1 1350212 1350673 D PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: mlo:mll3558 hypothetical protein; activator of Hsp90 ATPase 1 family protein 1350212..1350673 Nocardioides sp. JS614 4598898 YP_922478.1 CDS Noca_1277 NC_008699.1 1350681 1351178 R hypothetical protein complement(1350681..1351178) Nocardioides sp. JS614 4598899 YP_922479.1 CDS Noca_1278 NC_008699.1 1351261 1351548 D hypothetical protein 1351261..1351548 Nocardioides sp. JS614 4598900 YP_922480.1 CDS Noca_1279 NC_008699.1 1351987 1353303 R hypothetical protein complement(1351987..1353303) Nocardioides sp. JS614 4598901 YP_922481.1 CDS Noca_1280 NC_008699.1 1353339 1354583 R SMART: HNH nuclease; KEGG: fal:FRAAL3997 hypothetical protein; HNH nuclease complement(1353339..1354583) Nocardioides sp. JS614 4598902 YP_922482.1 CDS Noca_1281 NC_008699.1 1355216 1357189 D PFAM: peptidase C11, clostripain; KEGG: mac:MA4003 clostripain; peptidase C11, clostripain 1355216..1357189 Nocardioides sp. JS614 4598903 YP_922483.1 CDS Noca_1282 NC_008699.1 1357273 1358670 D PFAM: Ig domain protein, group 1 domain protein; KEGG: mpa:MAP3163 hypothetical protein; Ig domain-containing protein 1357273..1358670 Nocardioides sp. JS614 4598904 YP_922484.1 CDS Noca_1283 NC_008699.1 1358690 1358971 D KEGG: rxy:Rxyl_2608 transglycosylase-associated protein; transglycosylase-associated protein 1358690..1358971 Nocardioides sp. JS614 4598905 YP_922485.1 CDS Noca_1284 NC_008699.1 1358968 1359396 D PFAM: histidine triad (HIT) protein; KEGG: sus:Acid_2826 histidine triad (HIT) protein; histidine triad (HIT) protein 1358968..1359396 Nocardioides sp. JS614 4598906 YP_922486.1 CDS Noca_1285 NC_008699.1 1359498 1360265 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: sma:SAV7008 putative 3-oxoacyl-ACP reductase; short-chain dehydrogenase/reductase SDR 1359498..1360265 Nocardioides sp. JS614 4598907 YP_922487.1 CDS Noca_1286 NC_008699.1 1360369 1361397 D KEGG: sco:SCO6705 secreted protein; hypothetical protein 1360369..1361397 Nocardioides sp. JS614 4598908 YP_922488.1 CDS Noca_1287 NC_008699.1 1361432 1362136 R PFAM: regulatory protein, TetR; KEGG: nfa:nfa30770 putative transcriptional regulator; regulatory protein TetR complement(1361432..1362136) Nocardioides sp. JS614 4598909 YP_922489.1 CDS Noca_1288 NC_008699.1 1362275 1362811 D hypothetical protein 1362275..1362811 Nocardioides sp. JS614 4598910 YP_922490.1 CDS Noca_1289 NC_008699.1 1362942 1363517 D PFAM: protein of unknown function DUF179; KEGG: sma:SAV5129 putative transcriptional regulator; hypothetical protein 1362942..1363517 Nocardioides sp. JS614 4598911 YP_922491.1 CDS Noca_1290 NC_008699.1 1363598 1363921 D KEGG: pac:PPA1685 hypothetical protein; hypothetical protein 1363598..1363921 Nocardioides sp. JS614 4598912 YP_922492.1 CDS Noca_1291 NC_008699.1 1363918 1365714 D PFAM: type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sma:SAV5140 protein involving differentiation; type III restriction enzyme, res subunit 1363918..1365714 Nocardioides sp. JS614 4598913 YP_922493.1 CDS Noca_1292 NC_008699.1 1365690 1366370 D SMART: regulatory proteins, IclR; KEGG: sma:SAV5141 differentiation regulon (IclR-family transcriptional regulator); regulatory proteins IclR 1365690..1366370 Nocardioides sp. JS614 4598914 YP_922494.1 CDS Noca_1293 NC_008699.1 1366420 1368048 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: aba:Acid345_1672 methyl-accepting chemotaxis sensory transducer; chemotaxis sensory transducer complement(1366420..1368048) Nocardioides sp. JS614 4598915 YP_922495.1 CDS Noca_1294 NC_008699.1 1368127 1368594 R PFAM: regulatory protein, AsnC/Lrp family; KEGG: sco:SCO2928 AsnC-family transcriptional regulator; AsnC family transcriptional regulator complement(1368127..1368594) Nocardioides sp. JS614 4598916 YP_922496.1 CDS Noca_1295 NC_008699.1 1368677 1369870 D KEGG: rha:RHA1_ro03041 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 1368677..1369870 Nocardioides sp. JS614 4598917 YP_922497.1 CDS Noca_1296 NC_008699.1 1370039 1371259 R PFAM: major facilitator superfamily MFS_1; KEGG: nfa:nfa4770 putative transporter; major facilitator transporter complement(1370039..1371259) Nocardioides sp. JS614 4598918 YP_922498.1 CDS Noca_1297 NC_008699.1 1371256 1371729 R PFAM: regulatory protein, MarR; KEGG: rha:RHA1_ro05520 possible transcriptional regulator, MarR family; regulatory protein MarR complement(1371256..1371729) Nocardioides sp. JS614 4598919 YP_922499.1 CDS Noca_1298 NC_008699.1 1371790 1372326 D PFAM: protein of unknown function DUF1697; KEGG: lic:LIC10638 hypothetical protein; hypothetical protein 1371790..1372326 Nocardioides sp. JS614 4598920 YP_922500.1 CDS Noca_1299 NC_008699.1 1372380 1374227 D PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: sco:SCO2015 putative nucleotidase; 5'-nucleotidase domain-containing protein 1372380..1374227 Nocardioides sp. JS614 4598921 YP_922501.1 CDS Noca_1300 NC_008699.1 1374279 1375049 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rha:RHA1_ro03948 possible enoyl-CoA hydratase; short chain enoyl-CoA hydratase / enoyl-CoA hydratase complement(1374279..1375049) Nocardioides sp. JS614 4598922 YP_922502.1 CDS Noca_1301 NC_008699.1 1375042 1375626 R PFAM: isochorismatase hydrolase; KEGG: mmc:Mmcs_5114 isochorismatase hydrolase; isochorismatase hydrolase complement(1375042..1375626) Nocardioides sp. JS614 4598923 YP_922503.1 CDS Noca_1302 NC_008699.1 1375640 1376842 R PFAM: ROK family protein; KEGG: sco:SCO6008 probable transcriptional repressor protein; ROK family protein complement(1375640..1376842) Nocardioides sp. JS614 4598924 YP_922504.1 CDS Noca_1303 NC_008699.1 1377044 1378342 D PFAM: extracellular solute-binding protein, family 1; KEGG: pac:PPA1966 bacterial extracellular solute-binding protein; extracellular solute-binding protein 1377044..1378342 Nocardioides sp. JS614 4598925 YP_922505.1 CDS Noca_1304 NC_008699.1 1378428 1379324 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pac:PPA1965 binding-protein-dependent transport permease; binding-protein-dependent transport system inner membrane protein 1378428..1379324 Nocardioides sp. JS614 4598926 YP_922506.1 CDS Noca_1305 NC_008699.1 1379321 1380208 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pac:PPA1964 binding-protein-dependent transport permease; binding-protein-dependent transport system inner membrane protein 1379321..1380208 Nocardioides sp. JS614 4598543 YP_922507.1 CDS Noca_1306 NC_008699.1 1380219 1381433 D PFAM: N-acylglucosamine 2-epimerase; KEGG: tfu:Tfu_1736 hypothetical protein; N-acylglucosamine 2-epimerase 1380219..1381433 Nocardioides sp. JS614 4598544 YP_922508.1 CDS Noca_1307 NC_008699.1 1381500 1382819 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase complement(1381500..1382819) Nocardioides sp. JS614 4598545 YP_922509.1 CDS Noca_1308 NC_008699.1 1383198 1383782 D KEGG: sco:SCO2915 hypothetical protein; hypothetical protein 1383198..1383782 Nocardioides sp. JS614 4598546 YP_922510.1 CDS Noca_1309 NC_008699.1 1383903 1384271 D PFAM: NUDIX hydrolase; KEGG: rha:RHA1_ro06443 MutT/NUDIX family protein; NUDIX hydrolase 1383903..1384271 Nocardioides sp. JS614 4598547 YP_922511.1 CDS Noca_1310 NC_008699.1 1384289 1384747 D PFAM: Mov34/MPN/PAD-1 family protein; KEGG: sma:SAV5162 hypothetical protein; Mov34/MPN/PAD-1 family protein 1384289..1384747 Nocardioides sp. JS614 4598548 YP_922512.1 CDS Noca_1311 NC_008699.1 1384750 1385022 D PFAM: thiamineS protein; KEGG: rha:RHA1_ro01437 possible molybdopterin biosynthesis protein; sulfur transfer protein ThiS 1384750..1385022 Nocardioides sp. JS614 4598549 YP_922513.1 CDS Noca_1312 NC_008699.1 1385045 1386007 D KEGG: tfu:Tfu_2368 cysteine synthase K/M; TIGRFAM: cysteine synthases; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; cysteine synthase 1385045..1386007 Nocardioides sp. JS614 4598550 YP_922514.1 CDS Noca_1313 NC_008699.1 1386030 1386758 R KEGG: tbd:Tbd_2428 putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; SMART: PAC repeat-containing protein; PAS sensor protein complement(1386030..1386758) Nocardioides sp. JS614 4598551 YP_922515.1 CDS Noca_1314 NC_008699.1 1386839 1387849 R PFAM: sulfatase; type I phosphodiesterase/nucleotide pyrophosphatase; metalloenzyme domain protein; KEGG: bfr:BF3778 hypothetical protein; type I phosphodiesterase/nucleotide pyrophosphatase complement(1386839..1387849) Nocardioides sp. JS614 4598552 YP_922516.1 CDS Noca_1315 NC_008699.1 1387943 1388791 D converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 1387943..1388791 Nocardioides sp. JS614 4598553 YP_922517.1 CDS Noca_1316 NC_008699.1 1388795 1389565 D PFAM: beta-lactamase domain protein; KEGG: tfu:Tfu_2366 hypothetical protein; beta-lactamase domain-containing protein 1388795..1389565 Nocardioides sp. JS614 4598554 YP_922518.1 CDS Noca_1317 NC_008699.1 1389568 1390389 R hypothetical protein complement(1389568..1390389) Nocardioides sp. JS614 4598555 YP_922519.1 CDS Noca_1318 NC_008699.1 1390526 1391203 R PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: tfu:Tfu_2233 regulatory protein, LuxR:response regulator receiver; response regulator receiver complement(1390526..1391203) Nocardioides sp. JS614 4598556 YP_922520.1 CDS Noca_1319 NC_008699.1 1391200 1392354 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: sma:SAV1990 two-component system sensor kinase; histidine kinase, dimerisation and phosphoacceptor region complement(1391200..1392354) Nocardioides sp. JS614 4598557 YP_922521.1 CDS Noca_1320 NC_008699.1 1392486 1393388 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tfu:Tfu_1436 ABC-type multidrug transport system ATPase component; ABC transporter-like protein 1392486..1393388 Nocardioides sp. JS614 4598558 YP_922522.1 CDS Noca_1321 NC_008699.1 1393385 1394197 D hypothetical protein 1393385..1394197 Nocardioides sp. JS614 4598559 YP_922523.1 CDS Noca_1322 NC_008699.1 1394199 1395014 D KEGG: sco:SCO6361 integral membrane protein; hypothetical protein 1394199..1395014 Nocardioides sp. JS614 4598560 YP_922524.1 CDS rph NC_008699.1 1395035 1395763 D RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 1395035..1395763 Nocardioides sp. JS614 4598561 YP_922525.1 CDS Noca_1324 NC_008699.1 1395760 1396374 D TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; KEGG: nfa:nfa10960 HAM1 protein; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase 1395760..1396374 Nocardioides sp. JS614 4598562 YP_922526.1 CDS Noca_1325 NC_008699.1 1396371 1396982 D PFAM: phospholipid/glycerol acyltransferase; KEGG: ttj:TTHA1390 acyltransferase family protein; phospholipid/glycerol acyltransferase 1396371..1396982 Nocardioides sp. JS614 4598563 YP_922527.1 CDS Noca_1326 NC_008699.1 1397160 1397651 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sma:SAV5176 putative AhpC/TSA family protein; redoxin domain-containing protein complement(1397160..1397651) Nocardioides sp. JS614 4598565 YP_922528.1 CDS Noca_1327 NC_008699.1 1397744 1398433 D PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: sma:SAV3606 putative membrane protein; cobalamin (vitamin B12) biosynthesis protein CbiM 1397744..1398433 Nocardioides sp. JS614 4598566 YP_922529.1 CDS Noca_1328 NC_008699.1 1398430 1398705 D KEGG: sma:SAV3606 putative membrane protein; hypothetical protein 1398430..1398705 Nocardioides sp. JS614 4598567 YP_922530.1 CDS Noca_1329 NC_008699.1 1398707 1399375 D TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: sma:SAV3607 putative integral membrane transport protein; cobalt ABC transporter, inner membrane subunit CbiQ 1398707..1399375 Nocardioides sp. JS614 4598568 YP_922531.1 CDS Noca_1330 NC_008699.1 1399383 1400195 D KEGG: sma:SAV3608 putative ABC transporter ATP-binding protein; TIGRFAM: cobalt ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; cobalt ABC transporter ATPase 1399383..1400195 Nocardioides sp. JS614 4598569 YP_922532.1 CDS Noca_1331 NC_008699.1 1400192 1400446 D KEGG: sco:SCO2900 membrane protein; hypothetical protein 1400192..1400446 Nocardioides sp. JS614 4598570 YP_922533.1 CDS Noca_1332 NC_008699.1 1400450 1400794 D PFAM: chaperonin Cpn10; KEGG: sma:SAV5178 putative GroES-family molecular chaperone; chaperonin Cpn10 1400450..1400794 Nocardioides sp. JS614 4598571 YP_922534.1 CDS Noca_1333 NC_008699.1 1400834 1403233 D PFAM: peptidase S45, penicillin amidase; KEGG: dra:DRA0255 aculeacin A acylase; peptidase S45, penicillin amidase 1400834..1403233 Nocardioides sp. JS614 4598572 YP_922535.1 CDS Noca_1334 NC_008699.1 1403315 1404448 R hypothetical protein complement(1403315..1404448) Nocardioides sp. JS614 4598573 YP_922536.1 CDS Noca_1335 NC_008699.1 1404642 1406141 R PFAM: Rieske [2Fe-2S] domain protein; FAD dependent oxidoreductase; KEGG: mpa:MAP1672 hypothetical protein; FAD dependent oxidoreductase complement(1404642..1406141) Nocardioides sp. JS614 4598574 YP_922537.1 CDS Noca_1336 NC_008699.1 1406143 1407276 R TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: rha:RHA1_ro02920 tRNA processing ribonuclease BN; putative ribonuclease BN complement(1406143..1407276) Nocardioides sp. JS614 4598575 YP_922538.1 CDS Noca_1337 NC_008699.1 1407273 1407839 R PFAM: regulatory protein, LuxR; KEGG: sco:SCO0421 two-component response regulator; regulatory protein LuxR complement(1407273..1407839) Nocardioides sp. JS614 4598576 YP_922539.1 CDS Noca_1338 NC_008699.1 1408004 1410322 D PFAM: glycosyl transferase, family 2; KEGG: eba:ebA6116 putative beta-(1-3)-glucosyl transferase; glycosyl transferase family protein 1408004..1410322 Nocardioides sp. JS614 4598577 YP_922540.1 CDS Noca_1339 NC_008699.1 1410514 1412085 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: nfa:nfa23620 putative oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(1410514..1412085) Nocardioides sp. JS614 4598579 YP_922541.1 CDS Noca_1340 NC_008699.1 1412168 1414216 D KEGG: mag:amb1112 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; MASE1 domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor signal transduction histidine kinase 1412168..1414216 Nocardioides sp. JS614 4598580 YP_922542.1 CDS Noca_1341 NC_008699.1 1414310 1415257 D PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: sco:SCO3798 possible chromosome condensation protein; pirin domain-containing protein 1414310..1415257 Nocardioides sp. JS614 4598581 YP_922543.1 CDS Noca_1342 NC_008699.1 1415343 1415804 D hypothetical protein 1415343..1415804 Nocardioides sp. JS614 4598582 YP_922544.1 CDS Noca_1343 NC_008699.1 1416026 1419028 D PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; KEGG: cps:CPS_3335 serine protease, subtilase family; peptidase S8/S53 subtilisin kexin sedolisin 1416026..1419028 Nocardioides sp. JS614 4598508 YP_922545.1 CDS Noca_1344 NC_008699.1 1419132 1419821 R PFAM: regulatory protein, ArsR; LexA DNA-binding domain protein; KEGG: mpa:MAP2725c hypothetical protein; transcriptional regulator complement(1419132..1419821) Nocardioides sp. JS614 4598509 YP_922546.1 CDS Noca_1345 NC_008699.1 1419949 1421193 D PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO0213 putative nitrate/nitrite transporter protein; major facilitator transporter 1419949..1421193 Nocardioides sp. JS614 4598510 YP_922547.1 CDS Noca_1346 NC_008699.1 1421190 1424912 D TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: sco:SCO6535 putative nitrate reductase alpha chain NarG; respiratory nitrate reductase subunit alpha 1421190..1424912 Nocardioides sp. JS614 4598511 YP_922548.1 CDS Noca_1347 NC_008699.1 1424993 1426747 D TIGRFAM: nitrate reductase, beta subunit; KEGG: mmc:Mmcs_1262 nitrate reductase, beta subunit; respiratory nitrate reductase subunit beta 1424993..1426747 Nocardioides sp. JS614 4598512 YP_922549.1 CDS Noca_1348 NC_008699.1 1426744 1427454 D TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase, delta subunit; KEGG: nfa:nfa45510 putative nitrate reductase delta subunit; respiratory nitrate reductase chaperone NarJ 1426744..1427454 Nocardioides sp. JS614 4598513 YP_922550.1 CDS Noca_1349 NC_008699.1 1427457 1428185 D TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase, gamma subunit; KEGG: mbo:Mb1765c probable nitrate reductase NarX; respiratory nitrate reductase subunit gamma 1427457..1428185 Nocardioides sp. JS614 4598514 YP_922551.1 CDS Noca_1350 NC_008699.1 1428178 1428642 D PFAM: Hemerythrin HHE cation binding domain protein; KEGG: mmc:Mmcs_5288 hemerythrin HHE cation binding region; hemerythrin HHE cation binding domain-containing protein 1428178..1428642 Nocardioides sp. JS614 4598515 YP_922552.1 CDS Noca_1351 NC_008699.1 1429063 1429731 R 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease complement(1429063..1429731) Nocardioides sp. JS614 4598517 YP_922553.1 CDS Noca_1352 NC_008699.1 1429807 1430292 D PFAM: DoxX family protein; KEGG: fal:FRAAL1525 hypothetical protein; putative membrane protein; putative DoxD-like domain; DoxX family protein 1429807..1430292 Nocardioides sp. JS614 4598518 YP_922554.1 CDS Noca_1353 NC_008699.1 1430292 1431026 D PFAM: DSBA oxidoreductase; KEGG: fra:Francci3_0913 DsbA oxidoreductase; DSBA oxidoreductase 1430292..1431026 Nocardioides sp. JS614 4598519 YP_922555.1 CDS Noca_1354 NC_008699.1 1431351 1432841 D KEGG: mpa:MAP1053 hypothetical protein; hypothetical protein 1431351..1432841 Nocardioides sp. JS614 4598520 YP_922556.1 CDS Noca_1355 NC_008699.1 1432838 1433884 D catalyzes the formation of inosine from adenosine; adenosine deaminase 1432838..1433884 Nocardioides sp. JS614 4598521 YP_922557.1 CDS Noca_1356 NC_008699.1 1434044 1434697 D PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: mmc:Mmcs_1056 two component transcriptional regulator, LuxR family; regulatory protein LuxR 1434044..1434697 Nocardioides sp. JS614 4598522 YP_922558.1 CDS Noca_1357 NC_008699.1 1434747 1434971 D hypothetical protein 1434747..1434971 Nocardioides sp. JS614 4598523 YP_922559.1 CDS Noca_1358 NC_008699.1 1435142 1435459 D hypothetical protein 1435142..1435459 Nocardioides sp. JS614 4598524 YP_922560.1 CDS Noca_1359 NC_008699.1 1435544 1436227 D KEGG: ade:Adeh_3507 hypothetical protein; hypothetical protein 1435544..1436227 Nocardioides sp. JS614 4598525 YP_922561.1 CDS Noca_1360 NC_008699.1 1436589 1437929 R hypothetical protein complement(1436589..1437929) Nocardioides sp. JS614 4598527 YP_922562.1 CDS Noca_1361 NC_008699.1 1438107 1438364 R KEGG: rha:RHA1_ro02307 hypothetical protein; hypothetical protein complement(1438107..1438364) Nocardioides sp. JS614 4598528 YP_922563.1 CDS Noca_1362 NC_008699.1 1438368 1438697 R KEGG: rha:RHA1_ro02307 hypothetical protein; hypothetical protein complement(1438368..1438697) Nocardioides sp. JS614 4598529 YP_922564.1 CDS Noca_1363 NC_008699.1 1438713 1439069 R PFAM: Cupin 2, conserved barrel domain protein; KEGG: nfa:nfa32740 hypothetical protein; cupin complement(1438713..1439069) Nocardioides sp. JS614 4598530 YP_922565.1 CDS Noca_1364 NC_008699.1 1439299 1440741 R PFAM: peptidase M24; peptidase M24B, X-Pro dipeptidase/aminopeptidase domain protein; KEGG: tfu:Tfu_1744 Xaa-Pro aminopeptidase; Xaa-Pro aminopeptidase complement(1439299..1440741) Nocardioides sp. JS614 4598531 YP_922566.1 CDS Noca_1365 NC_008699.1 1440810 1441943 D KEGG: tfu:Tfu_1996 putative integral membrane protein; putative integral membrane protein 1440810..1441943 Nocardioides sp. JS614 4598532 YP_922567.1 CDS Noca_1366 NC_008699.1 1441940 1443658 D KEGG: pac:PPA1639 putative ABC transporter; putative ABC transporter 1441940..1443658 Nocardioides sp. JS614 4598533 YP_922568.1 CDS Noca_1367 NC_008699.1 1443732 1445399 D KEGG: pac:PPA1638 putative ABC transporter; putative ABC transporter 1443732..1445399 Nocardioides sp. JS614 4598534 YP_922569.1 CDS Noca_1368 NC_008699.1 1445438 1445995 D TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: lxx:Lxx12825 single-strand DNA-binding protein; single-strand binding protein 1445438..1445995 Nocardioides sp. JS614 4598535 YP_922570.1 CDS Noca_1369 NC_008699.1 1446068 1447750 D ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein 1446068..1447750 Nocardioides sp. JS614 4598536 YP_922571.1 CDS Noca_1370 NC_008699.1 1447997 1448491 R PFAM: regulatory protein, MarR; KEGG: nfa:nfa2240 putative transcriptional regulator; regulatory protein MarR complement(1447997..1448491) Nocardioides sp. JS614 4598537 YP_922572.1 CDS Noca_1371 NC_008699.1 1448622 1449836 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(1448622..1449836) Nocardioides sp. JS614 4598538 YP_922573.1 CDS Noca_1372 NC_008699.1 1449936 1450517 R PFAM: regulatory protein, TetR; KEGG: ade:Adeh_2880 putative transcriptional regulator, TetR family; regulatory protein TetR complement(1449936..1450517) Nocardioides sp. JS614 4598539 YP_922574.1 CDS Noca_1373 NC_008699.1 1450867 1451718 D PFAM: acyl-ACP thioesterase; thioesterase superfamily protein; KEGG: sco:SCO2676 hypothetical protein; thioesterase superfamily protein 1450867..1451718 Nocardioides sp. JS614 4598540 YP_922575.1 CDS Noca_1374 NC_008699.1 1452261 1452893 R KEGG: sco:SCO4826 hypothetical protein; hypothetical protein complement(1452261..1452893) Nocardioides sp. JS614 4598541 YP_922576.1 CDS Noca_1375 NC_008699.1 1452965 1453462 R KEGG: lma:LmjF31.2670 hypothetical protein, unknown function; hypothetical protein complement(1452965..1453462) Nocardioides sp. JS614 4598542 YP_922577.1 CDS Noca_1376 NC_008699.1 1453844 1454218 R PFAM: globin; KEGG: sco:SCO2671 putative globin; globin complement(1453844..1454218) Nocardioides sp. JS614 4595849 YP_922578.1 CDS Noca_1377 NC_008699.1 1454318 1454743 D PFAM: OsmC family protein; KEGG: sma:SAV1862 putative ATP/GTP-binding protein; OsmC family protein 1454318..1454743 Nocardioides sp. JS614 4595850 YP_922579.1 CDS Noca_1378 NC_008699.1 1454752 1455780 R PFAM: MscS Mechanosensitive ion channel; KEGG: fra:Francci3_1154 MscS mechanosensitive ion channel; mechanosensitive ion channel MscS complement(1454752..1455780) Nocardioides sp. JS614 4595851 YP_922580.1 CDS Noca_1379 NC_008699.1 1455836 1456204 D hypothetical protein 1455836..1456204 Nocardioides sp. JS614 4595852 YP_922581.1 CDS Noca_1380 NC_008699.1 1456191 1456580 D KEGG: fra:Francci3_1159 hypothetical protein; hypothetical protein 1456191..1456580 Nocardioides sp. JS614 4595853 YP_922582.1 CDS Noca_1381 NC_008699.1 1456642 1459233 R TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: sco:SCO2643 aminopeptidase N; aminopeptidase N complement(1456642..1459233) Nocardioides sp. JS614 4595854 YP_922583.1 CDS Noca_1382 NC_008699.1 1459289 1460419 D TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: rxy:Rxyl_2688 chromate transporter; chromate transporter 1459289..1460419 Nocardioides sp. JS614 4595855 YP_922584.1 CDS Noca_1383 NC_008699.1 1460421 1461047 D KEGG: mmc:Mmcs_3603 DsbA oxidoreductase; DsbA oxidoreductase 1460421..1461047 Nocardioides sp. JS614 4595856 YP_922585.1 CDS Noca_1384 NC_008699.1 1461071 1461625 D KEGG: fal:FRAAL5554 hypothetical protein; hypothetical protein 1461071..1461625 Nocardioides sp. JS614 4595857 YP_922586.1 CDS Noca_1385 NC_008699.1 1461655 1462344 R KEGG: rha:RHA1_ro05008 hypothetical protein; hypothetical protein complement(1461655..1462344) Nocardioides sp. JS614 4595858 YP_922587.1 CDS Noca_1386 NC_008699.1 1462407 1464194 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 1462407..1464194 Nocardioides sp. JS614 4595859 YP_922588.1 CDS Noca_1387 NC_008699.1 1464253 1464705 R KEGG: mmc:Mmcs_2426 class I peptide chain release factor; class I peptide chain release factor complement(1464253..1464705) Nocardioides sp. JS614 4595860 YP_922589.1 CDS Noca_1388 NC_008699.1 1464687 1465097 R PFAM: CoA-binding domain protein; KEGG: rha:RHA1_ro01695 possible CoA-binding protein; CoA-binding domain-containing protein complement(1464687..1465097) Nocardioides sp. JS614 4595861 YP_922590.1 CDS Noca_1389 NC_008699.1 1465246 1466073 D hypothetical protein 1465246..1466073 Nocardioides sp. JS614 4595862 YP_922591.1 CDS Noca_1390 NC_008699.1 1466184 1467356 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: sco:SCO3051 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 1466184..1467356 Nocardioides sp. JS614 4595863 YP_922592.1 CDS Noca_1391 NC_008699.1 1467455 1467781 D KEGG: sma:SAV1685 hypothetical protein; hypothetical protein 1467455..1467781 Nocardioides sp. JS614 4595864 YP_922593.1 CDS Noca_1392 NC_008699.1 1467785 1470718 R TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; KEGG: cya:CYA_2836 sensory box histidine kinase/response regulator; PAS sensor protein complement(1467785..1470718) Nocardioides sp. JS614 4595865 YP_922594.1 CDS Noca_1393 NC_008699.1 1470960 1471742 D PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: fal:FRAAL5992 SigH putative RNA polymerase sigma factor; sigma-70 region 4 domain-containing protein 1470960..1471742 Nocardioides sp. JS614 4595866 YP_922595.1 CDS Noca_1394 NC_008699.1 1471739 1472605 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(1471739..1472605) Nocardioides sp. JS614 4595867 YP_922596.1 CDS Noca_1395 NC_008699.1 1472602 1473816 R TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: pac:PPA1699 cell envelope-related transcriptional attenuator; cell envelope-related transcriptional attenuator complement(1472602..1473816) Nocardioides sp. JS614 4595868 YP_922597.1 CDS Noca_1396 NC_008699.1 1473826 1475202 R PFAM: protein of unknown function UPF0089; KEGG: rha:RHA1_ro00024 hypothetical protein; diacylglycerol O-acyltransferase complement(1473826..1475202) Nocardioides sp. JS614 4595869 YP_922598.1 CDS Noca_1397 NC_008699.1 1475702 1476220 D PFAM: thioesterase superfamily protein; KEGG: sco:SCO3049 acyl-CoA hydrolase; thioesterase superfamily protein 1475702..1476220 Nocardioides sp. JS614 4595870 YP_922599.1 CDS Noca_1398 NC_008699.1 1476323 1477768 D TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: tfu:Tfu_0017 cell envelope-related transcriptional attenuator; cell envelope-related transcriptional attenuator 1476323..1477768 Nocardioides sp. JS614 4595871 YP_922600.1 CDS Noca_1399 NC_008699.1 1477851 1478798 D PFAM: glycosyl transferase, family 2; KEGG: cdi:DIP0168 putative glycosyl transferase; glycosyl transferase family protein 1477851..1478798 Nocardioides sp. JS614 4595872 YP_922601.1 CDS Noca_1400 NC_008699.1 1478795 1479715 D PFAM: glycosyl transferase, family 2; KEGG: mth:MTH348 rhamnosyl transferase; glycosyl transferase family protein 1478795..1479715 Nocardioides sp. JS614 4595873 YP_922602.1 CDS Noca_1401 NC_008699.1 1479722 1480909 D PFAM: UDP-galactopyranose mutase; KEGG: rha:RHA1_ro04053 UDP-galactopyranose mutase; UDP-galactopyranose mutase 1479722..1480909 Nocardioides sp. JS614 4595874 YP_922603.1 CDS Noca_1402 NC_008699.1 1480977 1482956 D KEGG: rha:RHA1_ro04054 possible glycosyltransferase; putative glycosyltransferase 1480977..1482956 Nocardioides sp. JS614 4595875 YP_922604.1 CDS Noca_1403 NC_008699.1 1482947 1483849 D PFAM: ABC-2 type transporter; KEGG: lxx:Lxx05020 lipopolysaccharide exporter; ABC transporter 1482947..1483849 Nocardioides sp. JS614 4595876 YP_922605.1 CDS Noca_1404 NC_008699.1 1483846 1484646 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lxx:Lxx05010 lipopolysaccharide exporter; ABC transporter-like protein 1483846..1484646 Nocardioides sp. JS614 4595877 YP_922606.1 CDS Noca_1405 NC_008699.1 1484953 1487832 D PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; FG-GAP repeat protein; SMART: Animal peptidoglycan recognition protein PGRP; KEGG: sma:SAV5036 hypothetical protein; N-acetylmuramoyl-L-alanine amidase 1484953..1487832 Nocardioides sp. JS614 4597312 YP_922607.1 CDS Noca_1406 NC_008699.1 1487875 1488615 R KEGG: sma:SAV5035 hypothetical protein; hypothetical protein complement(1487875..1488615) Nocardioides sp. JS614 4597313 YP_922608.1 CDS Noca_1407 NC_008699.1 1488633 1489712 D PFAM: Nucleotidyl transferase; KEGG: lxx:Lxx04570 mannose-1-phosphate guanylyltransferase; mannose-1-phosphate guanylyltransferase (GDP) 1488633..1489712 Nocardioides sp. JS614 4597314 YP_922609.1 CDS Noca_1408 NC_008699.1 1489738 1490493 R KEGG: fal:FRAAL1258 hypothetical protein; putative signal peptide; hypothetical protein complement(1489738..1490493) Nocardioides sp. JS614 4597315 YP_922610.1 CDS Noca_1409 NC_008699.1 1490556 1491521 R TIGRFAM: F420-dependent oxidoreductase, putative; PFAM: protein of unknown function DUF129; KEGG: tfu:Tfu_2518 hypothetical protein; F420-dependent oxidoreductase complement(1490556..1491521) Nocardioides sp. JS614 4597316 YP_922611.1 CDS Noca_1410 NC_008699.1 1491518 1492531 R catalyzes the formation of the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) and GMP from actyl (2) diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO); LPPG:FO 2-phospho-L-lactate transferase complement(1491518..1492531) Nocardioides sp. JS614 4597317 YP_922612.1 CDS Noca_1411 NC_008699.1 1492688 1492942 D PFAM: transcription factor WhiB; KEGG: sco:SCO3034 sporulation regulatory protein; transcription factor WhiB 1492688..1492942 Nocardioides sp. JS614 4597318 YP_922613.1 CDS Noca_1412 NC_008699.1 1493039 1495894 D PFAM: glycosyl transferase, family 2; KEGG: sma:SAV5043 hypothetical protein; glycosyl transferase family protein 1493039..1495894 Nocardioides sp. JS614 4597319 YP_922614.1 CDS Noca_1413 NC_008699.1 1495891 1497318 D KEGG: tfu:Tfu_2513 hypothetical protein; hypothetical protein 1495891..1497318 Nocardioides sp. JS614 4597320 YP_922615.1 CDS Noca_1414 NC_008699.1 1497511 1498464 R PFAM: ornithine cyclodeaminase/mu-crystallin; Shikimate/quinate 5-dehydrogenase; KEGG: eca:ECA2039 putative ornithine cyclodeaminase; ornithine cyclodeaminase complement(1497511..1498464) Nocardioides sp. JS614 4597321 YP_922616.1 CDS Noca_1415 NC_008699.1 1498484 1499644 R PFAM: alanine racemase domain protein; KEGG: bja:bll3964 hypothetical protein; alanine racemase domain-containing protein complement(1498484..1499644) Nocardioides sp. JS614 4597322 YP_922617.1 CDS Noca_1416 NC_008699.1 1499725 1500654 R PFAM: aldo/keto reductase; KEGG: bja:blr1124 oxidoreductase; aldo/keto reductase complement(1499725..1500654) Nocardioides sp. JS614 4597323 YP_922618.1 CDS Noca_1417 NC_008699.1 1500651 1502327 R PFAM: amidohydrolase; D-aminoacylase domain protein; Amidohydrolase 3; KEGG: mta:Moth_1302 N-acyl-D-amino-acid deacylase; dihydroorotase complement(1500651..1502327) Nocardioides sp. JS614 4597324 YP_922619.1 CDS Noca_1418 NC_008699.1 1502324 1503154 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_B0418 ABC sugar transporter, inner membrane subunit; binding-protein-dependent transport systems inner membrane component complement(1502324..1503154) Nocardioides sp. JS614 4597325 YP_922620.1 CDS Noca_1419 NC_008699.1 1503151 1504095 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_B0419 ABC sugar transporter, inner membrane subunit; binding-protein-dependent transport system inner membrane protein complement(1503151..1504095) Nocardioides sp. JS614 4597326 YP_922621.1 CDS Noca_1420 NC_008699.1 1504169 1505443 R PFAM: extracellular solute-binding protein, family 1; KEGG: bmb:BruAb2_0484 sugar ABC transporter, periplasmic sugar-binding protein; extracellular solute-binding protein complement(1504169..1505443) Nocardioides sp. JS614 4597327 YP_922622.1 CDS Noca_1421 NC_008699.1 1505518 1506990 R PFAM: aldehyde dehydrogenase; KEGG: gka:GK1919 aldehyde dehydrogenase; aldehyde dehydrogenase complement(1505518..1506990) Nocardioides sp. JS614 4597328 YP_922623.1 CDS Noca_1422 NC_008699.1 1507194 1507859 D PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: mta:Moth_0073 transcriptional regulator, GntR family; GntR family transcriptional regulator 1507194..1507859 Nocardioides sp. JS614 4597329 YP_922624.1 CDS Noca_1423 NC_008699.1 1507871 1508323 R KEGG: fal:FRAAL1269 hypothetical protein; hypothetical protein complement(1507871..1508323) Nocardioides sp. JS614 4597330 YP_922625.1 CDS Noca_1424 NC_008699.1 1508373 1508732 D KEGG: sma:SAV5046 hypothetical protein; hypothetical protein 1508373..1508732 Nocardioides sp. JS614 4597331 YP_922626.1 CDS Noca_1425 NC_008699.1 1508756 1510165 D PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: sco:SCO3028 phosphomannomutase; phosphomannomutase 1508756..1510165 Nocardioides sp. JS614 4597332 YP_922627.1 CDS Noca_1426 NC_008699.1 1510167 1510337 D PFAM: protein of unknown function DUF343; KEGG: sma:SAV5049 hypothetical protein; hypothetical protein 1510167..1510337 Nocardioides sp. JS614 4597333 YP_922628.1 CDS Noca_1427 NC_008699.1 1510350 1511378 D KEGG: pac:PPA1688 hypothetical protein; hypothetical protein 1510350..1511378 Nocardioides sp. JS614 4597334 YP_922629.1 CDS Noca_1428 NC_008699.1 1511408 1512571 D PFAM: acyltransferase 3; KEGG: sma:SAV5444 hypothetical protein; acyltransferase 3 1511408..1512571 Nocardioides sp. JS614 4597335 YP_922630.1 CDS Noca_1429 NC_008699.1 1512660 1514081 D KEGG: fal:FRAAL2102 protoporphyrinogen oxidase; TIGRFAM: protoporphyrinogen oxidase; PFAM: amine oxidase; FAD dependent oxidoreductase; protoporphyrinogen oxidase 1512660..1514081 Nocardioides sp. JS614 4597336 YP_922631.1 CDS Noca_1430 NC_008699.1 1514078 1515247 D PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pai:PAE0596 metallo cofactor biosynthesis protein; radical SAM domain-containing protein 1514078..1515247 Nocardioides sp. JS614 4597198 YP_922632.1 CDS Noca_1431 NC_008699.1 1515287 1516231 D PFAM: protein of unknown function DUF808; KEGG: mmc:Mmcs_2667 protein of unknown function DUF808; hypothetical protein 1515287..1516231 Nocardioides sp. JS614 4597199 YP_922633.1 CDS Noca_1432 NC_008699.1 1516415 1517845 D catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 1516415..1517845 Nocardioides sp. JS614 4597200 YP_922634.1 CDS Noca_1433 NC_008699.1 1517961 1518707 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sco:SCO3013 putative two-component system response regulator; response regulator receiver 1517961..1518707 Nocardioides sp. JS614 4597201 YP_922635.1 CDS Noca_1434 NC_008699.1 1518715 1520349 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: sco:SCO3012 putative two-component system histidine kinase; ATPase domain-containing protein 1518715..1520349 Nocardioides sp. JS614 4597202 YP_922636.1 CDS Noca_1435 NC_008699.1 1520346 1522094 D KEGG: lxx:Lxx05370 lipoprotein; hypothetical protein 1520346..1522094 Nocardioides sp. JS614 4597203 YP_922637.1 CDS Noca_1436 NC_008699.1 1522253 1522900 D KEGG: sco:SCO3010 hypothetical protein; hypothetical protein 1522253..1522900 Nocardioides sp. JS614 4597204 YP_922638.1 CDS Noca_1437 NC_008699.1 1523421 1524044 D TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: sma:SAV5067 hypothetical protein; sigma 54 modulation protein / 30S ribosomal protein S30P 1523421..1524044 Nocardioides sp. JS614 4597205 YP_922639.1 CDS Noca_1438 NC_008699.1 1524224 1524865 D PFAM: regulatory protein, LuxR; response regulator receiver; Bacterio-opsin activator, HTH domain protein; KEGG: sma:SAV5068 putative two-component system response regulator; response regulator receiver 1524224..1524865 Nocardioides sp. JS614 4597206 YP_922640.1 CDS Noca_1439 NC_008699.1 1525163 1526362 D PFAM: protein of unknown function DUF1006; KEGG: tfu:Tfu_0254 hypothetical protein; hypothetical protein 1525163..1526362 Nocardioides sp. JS614 4597207 YP_922641.1 CDS Noca_1440 NC_008699.1 1526430 1529243 D TIGRFAM: preprotein translocase, SecA subunit; PFAM: helicase domain protein; SEC-C motif domain protein; SecA DEAD domain protein; SecA Wing and Scaffold; SecA preprotein cross-linking region; KEGG: sma:SAV5071 preprotein translocase SecA subunit; protein translocase subunit secA 1526430..1529243 Nocardioides sp. JS614 4597208 YP_922642.1 CDS Noca_1441 NC_008699.1 1529302 1529820 R KEGG: fal:FRAAL1307 hypothetical protein; hypothetical protein complement(1529302..1529820) Nocardioides sp. JS614 4597209 YP_922643.1 CDS Noca_1442 NC_008699.1 1529817 1530455 R KEGG: fra:Francci3_1730 response regulator receiver and SARP domain protein; hypothetical protein complement(1529817..1530455) Nocardioides sp. JS614 4597210 YP_922644.1 CDS Noca_1443 NC_008699.1 1530589 1531122 D KEGG: fra:Francci3_0770 hypothetical protein; hypothetical protein 1530589..1531122 Nocardioides sp. JS614 4597211 YP_922645.1 CDS Noca_1444 NC_008699.1 1531272 1531610 R mediates the export of protein precursors bearing twin-arginine signal peptides; sec-independent translocase complement(1531272..1531610) Nocardioides sp. JS614 4597212 YP_922646.1 CDS Noca_1445 NC_008699.1 1531635 1532798 R PFAM: protein of unknown function DUF59; KEGG: sma:SAV3112 putative ATP-binding protein; hypothetical protein complement(1531635..1532798) Nocardioides sp. JS614 4597213 YP_922647.1 CDS Noca_1446 NC_008699.1 1532810 1533352 R PFAM: protein of unknown function DUF1003; KEGG: sma:SAV3111 hypothetical protein; hypothetical protein complement(1532810..1533352) Nocardioides sp. JS614 4597214 YP_922648.1 CDS Noca_1447 NC_008699.1 1533345 1534619 R PFAM: CBS domain containing protein; MgtE intracellular region; KEGG: sma:SAV3110 magnesium (Mg2+) transporter; MgtE integral membrane protein complement(1533345..1534619) Nocardioides sp. JS614 4597215 YP_922649.1 CDS Noca_1448 NC_008699.1 1534663 1535781 D hypothetical protein 1534663..1535781 Nocardioides sp. JS614 4597216 YP_922650.1 CDS Noca_1449 NC_008699.1 1535864 1536958 D PFAM: Endonuclease/exonuclease/phosphatase; KEGG: hch:HCH_02985 beta-glucanase/beta-glucan synthetase; endonuclease/exonuclease/phosphatase 1535864..1536958 Nocardioides sp. JS614 4597217 YP_922651.1 CDS Noca_1450 NC_008699.1 1537051 1538250 D KEGG: sma:SAV5466 hypothetical protein; hypothetical protein 1537051..1538250 Nocardioides sp. JS614 4597218 YP_922652.1 CDS Noca_1451 NC_008699.1 1538342 1539913 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pat:Patl_3212 coagulation factor 5/8 type-like; type 11 methyltransferase 1538342..1539913 Nocardioides sp. JS614 4597219 YP_922653.1 CDS Noca_1452 NC_008699.1 1539910 1540149 D hypothetical protein 1539910..1540149 Nocardioides sp. JS614 4597220 YP_922654.1 CDS Noca_1453 NC_008699.1 1540155 1541213 D hypothetical protein 1540155..1541213 Nocardioides sp. JS614 4597221 YP_922655.1 CDS Noca_1454 NC_008699.1 1541260 1542681 D KEGG: sma:SAV5466 hypothetical protein; hypothetical protein 1541260..1542681 Nocardioides sp. JS614 4597222 YP_922656.1 CDS Noca_1455 NC_008699.1 1542686 1543717 D hypothetical protein 1542686..1543717 Nocardioides sp. JS614 4597223 YP_922657.1 CDS Noca_1456 NC_008699.1 1543771 1544967 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: sma:SAV1915 putative acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 1543771..1544967 Nocardioides sp. JS614 4597224 YP_922658.1 CDS Noca_1457 NC_008699.1 1545049 1546074 D hypothetical protein 1545049..1546074 Nocardioides sp. JS614 4597225 YP_922659.1 CDS Noca_1458 NC_008699.1 1546211 1546393 D hypothetical protein 1546211..1546393 Nocardioides sp. JS614 4597226 YP_922660.1 CDS Noca_1459 NC_008699.1 1546463 1546996 D PFAM: MaoC domain protein dehydratase; KEGG: sco:SCO6470 hypothetical protein; dehydratase 1546463..1546996 Nocardioides sp. JS614 4597227 YP_922661.1 CDS Noca_1460 NC_008699.1 1547014 1548195 R PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro06868 probable transporter, MFS superfamily; major facilitator transporter complement(1547014..1548195) Nocardioides sp. JS614 4597228 YP_922662.1 CDS Noca_1461 NC_008699.1 1548303 1550264 D PFAM: TrkA-N domain protein; KEGG: mlo:mll0907 probable secreted protein; TrkA domain-containing protein 1548303..1550264 Nocardioides sp. JS614 4597229 YP_922663.1 CDS Noca_1462 NC_008699.1 1550284 1550856 D PFAM: Phosphoglycerate mutase; KEGG: fal:FRAAL1530 putative phosphoglycerate mutase family protein; phosphoglycerate mutase 1550284..1550856 Nocardioides sp. JS614 4597230 YP_922664.1 CDS Noca_1463 NC_008699.1 1550950 1552194 R SMART: HNH nuclease; KEGG: fal:FRAAL3997 hypothetical protein; HNH nuclease complement(1550950..1552194) Nocardioides sp. JS614 4597231 YP_922665.1 CDS Noca_1464 NC_008699.1 1552552 1553199 D KEGG: tfu:Tfu_0510 hypothetical protein; hypothetical protein 1552552..1553199 Nocardioides sp. JS614 4597232 YP_922666.1 CDS Noca_1465 NC_008699.1 1553227 1554117 D PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: pac:PPA1328 predicted metal-dependent phosphoesterase; phosphotransferase domain-containing protein 1553227..1554117 Nocardioides sp. JS614 4597233 YP_922667.1 CDS Noca_1466 NC_008699.1 1554121 1554882 R PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sco:SCO4764 putative dehydrogenase; short-chain dehydrogenase/reductase SDR complement(1554121..1554882) Nocardioides sp. JS614 4597234 YP_922668.1 CDS Noca_1467 NC_008699.1 1555086 1555910 D PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: fal:FRAAL6061 putative partitioning or sporulation protein; cobyrinic acid a,c-diamide synthase 1555086..1555910 Nocardioides sp. JS614 4597235 YP_922669.1 CDS Noca_1468 NC_008699.1 1555907 1556611 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: sco:SCO4430 secreted protein; ErfK/YbiS/YcfS/YnhG family protein 1555907..1556611 Nocardioides sp. JS614 4597236 YP_922670.1 CDS Noca_1469 NC_008699.1 1556692 1558131 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: pac:PPA1325 putative ATP-dependent RNA helicase; DEAD/DEAH box helicase complement(1556692..1558131) Nocardioides sp. JS614 4596285 YP_922671.1 CDS Noca_1470 NC_008699.1 1558310 1559023 D KEGG: sma:SAV3097 hypothetical protein; hypothetical protein 1558310..1559023 Nocardioides sp. JS614 4596286 YP_922672.1 CDS Noca_1471 NC_008699.1 1559168 1559470 R KEGG: sco:SCO1819 integral membrane protein; integral membrane protein complement(1559168..1559470) Nocardioides sp. JS614 4596287 YP_922673.1 CDS Noca_1472 NC_008699.1 1559647 1559868 R KEGG: sma:SAV3095 hypothetical protein; hypothetical protein complement(1559647..1559868) Nocardioides sp. JS614 4596288 YP_922674.1 CDS Noca_1473 NC_008699.1 1559905 1560492 R PFAM: regulatory protein, TetR; KEGG: sco:SCO5170 TetR-family transcriptional regulator; TetR family transcriptional regulator complement(1559905..1560492) Nocardioides sp. JS614 4596289 YP_922675.1 CDS Noca_1474 NC_008699.1 1560721 1561932 D PFAM: UBA/THIF-type NAD/FAD binding protein; Rhodanese domain protein; MoeZ/MoeB domain protein; KEGG: sma:SAV3082 molybdopterin biosynthesis protein MoeB; UBA/THIF-type NAD/FAD binding protein 1560721..1561932 Nocardioides sp. JS614 4596290 YP_922676.1 CDS Noca_1475 NC_008699.1 1562112 1563173 D hypothetical protein 1562112..1563173 Nocardioides sp. JS614 4596291 YP_922677.1 CDS Noca_1476 NC_008699.1 1563307 1564044 D KEGG: sco:SCO6136 transmembrane protein; hypothetical protein 1563307..1564044 Nocardioides sp. JS614 4596292 YP_922678.1 CDS Noca_1477 NC_008699.1 1564041 1564499 D hypothetical protein 1564041..1564499 Nocardioides sp. JS614 4596293 YP_922679.1 CDS Noca_1478 NC_008699.1 1564502 1565524 D PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: mmc:Mmcs_0154 ATPase associated with various cellular activities, AAA_3; ATPase 1564502..1565524 Nocardioides sp. JS614 4596294 YP_922680.1 CDS Noca_1479 NC_008699.1 1565521 1566843 D PFAM: protein of unknown function DUF58; KEGG: mpa:MAP3217c hypothetical protein; hypothetical protein 1565521..1566843 Nocardioides sp. JS614 4596295 YP_922681.1 CDS Noca_1480 NC_008699.1 1566840 1567379 D hypothetical protein 1566840..1567379 Nocardioides sp. JS614 4596296 YP_922682.1 CDS Noca_1481 NC_008699.1 1567376 1567717 D PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: tfu:Tfu_0522 hypothetical protein; methylated-DNA--protein-cysteine methyltransferase 1567376..1567717 Nocardioides sp. JS614 4596297 YP_922683.1 CDS Noca_1482 NC_008699.1 1567791 1568825 D KEGG: rha:RHA1_ro04496 ABC transporter, ATP-binding component; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; daunorubicin resistance ABC transporter ATPase subunit 1567791..1568825 Nocardioides sp. JS614 4596298 YP_922684.1 CDS Noca_1483 NC_008699.1 1568825 1569634 D PFAM: ABC-2 type transporter; KEGG: rha:RHA1_ro04497 ABC transporter, permease component; ABC transporter 1568825..1569634 Nocardioides sp. JS614 4596299 YP_922685.1 CDS Noca_1484 NC_008699.1 1569722 1571140 R PFAM: protein of unknown function DUF1116; KEGG: mta:Moth_2121 protein of unknown function DUF1116; hypothetical protein complement(1569722..1571140) Nocardioides sp. JS614 4596300 YP_922686.1 CDS Noca_1485 NC_008699.1 1571137 1572552 R PFAM: FdrA family protein; KEGG: ecp:ECP_4036 YahF/FdrA-like protein; FdrA family protein complement(1571137..1572552) Nocardioides sp. JS614 4596301 YP_922687.1 CDS Noca_1486 NC_008699.1 1572549 1573202 R hypothetical protein complement(1572549..1573202) Nocardioides sp. JS614 4596302 YP_922688.1 CDS Noca_1487 NC_008699.1 1573278 1574594 D KEGG: rha:RHA1_ro05298 hypothetical protein; hypothetical protein 1573278..1574594 Nocardioides sp. JS614 4596303 YP_922689.1 CDS Noca_1488 NC_008699.1 1574954 1576417 D PFAM: Xanthine/uracil/vitamin C permease; KEGG: rha:RHA1_ro03492 possible xanthine/uracil permease; xanthine/uracil/vitamin C permease 1574954..1576417 Nocardioides sp. JS614 4596304 YP_922690.1 CDS Noca_1489 NC_008699.1 1576435 1577277 D PFAM: molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: rha:RHA1_ro03491 dehydrogenase; carbon monoxide dehydrogenase 1576435..1577277 Nocardioides sp. JS614 4596305 YP_922691.1 CDS Noca_1490 NC_008699.1 1577274 1577795 D PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rha:RHA1_ro03490 probable carbon monoxide dehydrogenase small subunit (ferredoxin); 2Fe-2S iron-sulfur cluster binding domain-containing protein 1577274..1577795 Nocardioides sp. JS614 4596306 YP_922692.1 CDS Noca_1491 NC_008699.1 1577800 1580211 D PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: rha:RHA1_ro03489 probable carbon monoxide dehydrogenase large subunit; xanthine dehydrogenase, molybdenum binding subunit apoprotein 1577800..1580211 Nocardioides sp. JS614 4596307 YP_922693.1 CDS Noca_1492 NC_008699.1 1580208 1580858 D PFAM: carbon monoxide dehydrogenase subunit G; KEGG: rha:RHA1_ro03488 possible carbon monoxide dehydrogenase protein G; carbon monoxide dehydrogenase subunit G 1580208..1580858 Nocardioides sp. JS614 4596308 YP_922694.1 CDS Noca_1493 NC_008699.1 1581001 1582407 D PFAM: Amidase; KEGG: rha:RHA1_ro04799 probable amidase; amidase 1581001..1582407 Nocardioides sp. JS614 4596309 YP_922695.1 CDS Noca_1494 NC_008699.1 1583773 1584438 D PFAM: phospholipid/glycerol acyltransferase; KEGG: lxx:Lxx12140 1-acylglycerol-3-phosphate O-acyltransferase; phospholipid/glycerol acyltransferase 1583773..1584438 Nocardioides sp. JS614 4596310 YP_922696.1 CDS Noca_1495 NC_008699.1 1584629 1585900 D PFAM: Amidohydrolase 3; KEGG: bja:bll7276 putative cytosine deaminase; N-isopropylammelide isopropylaminohydrolase 1584629..1585900 Nocardioides sp. JS614 4596311 YP_922697.1 CDS Noca_1496 NC_008699.1 1585897 1588017 D PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: rha:RHA1_ro03487 probable hydantoin utilization protein A; 5-oxoprolinase 1585897..1588017 Nocardioides sp. JS614 4596312 YP_922698.1 CDS Noca_1497 NC_008699.1 1588064 1590043 D PFAM: Hydantoinase B/oxoprolinase; KEGG: rha:RHA1_ro03486 probable hydantoin utilization protein B; hydantoinase B/oxoprolinase 1588064..1590043 Nocardioides sp. JS614 4596313 YP_922699.1 CDS Noca_1498 NC_008699.1 1590146 1590841 D KEGG: fal:FRAAL0649 hypothetical protein; hypothetical protein 1590146..1590841 Nocardioides sp. JS614 4596314 YP_922700.1 CDS Noca_1499 NC_008699.1 1590868 1591542 D PFAM: NmrA family protein; KEGG: rha:RHA1_ro03485 hypothetical protein; NmrA family protein 1590868..1591542 Nocardioides sp. JS614 4596315 YP_922701.1 CDS Noca_1500 NC_008699.1 1591621 1592316 R PFAM: protein of unknown function DUF124; KEGG: tko:TK0182 hypothetical protein; hypothetical protein complement(1591621..1592316) Nocardioides sp. JS614 4596316 YP_922702.1 CDS Noca_1501 NC_008699.1 1592425 1592826 D PFAM: protein of unknown function DUF985; KEGG: blo:BL1117 narrowly conserved hypothetical protein; hypothetical protein 1592425..1592826 Nocardioides sp. JS614 4596317 YP_922703.1 CDS Noca_1502 NC_008699.1 1592823 1593578 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: sco:SCO1335 putative oxidoreductase; short-chain dehydrogenase/reductase SDR 1592823..1593578 Nocardioides sp. JS614 4596318 YP_922704.1 CDS Noca_1503 NC_008699.1 1593801 1594478 D KEGG: sco:SCO3603 putative Na(+)/H(+) antiporter; NhaP-type Na+/H+ and K+/H+ antiporter 1593801..1594478 Nocardioides sp. JS614 4596319 YP_922705.1 CDS Noca_1504 NC_008699.1 1594728 1595699 D catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 1594728..1595699 Nocardioides sp. JS614 4596320 YP_922706.1 CDS Noca_1505 NC_008699.1 1595729 1596844 D KEGG: rha:RHA1_ro05296 cyanuric acid amidohydrolase; barbiturase 1595729..1596844 Nocardioides sp. JS614 4596321 YP_922707.1 CDS Noca_1506 NC_008699.1 1597015 1598172 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rha:RHA1_ro02936 probable formyl-CoA transferase; L-carnitine dehydratase/bile acid-inducible protein F complement(1597015..1598172) Nocardioides sp. JS614 4596322 YP_922708.1 CDS Noca_1507 NC_008699.1 1598244 1598819 R PFAM: ThiJ/PfpI domain protein; KEGG: bca:BCE_2883 hypothetical protein; ThiJ/PfpI domain-containing protein complement(1598244..1598819) Nocardioides sp. JS614 4595658 YP_922709.1 CDS Noca_1508 NC_008699.1 1598940 1602122 D PFAM: UvrD/REP helicase; KEGG: sco:SCO5183 ATP-dependent DNA helicase; UvrD/REP helicase 1598940..1602122 Nocardioides sp. JS614 4595659 YP_922710.1 CDS Noca_1509 NC_008699.1 1602119 1605340 D PFAM: UvrD/REP helicase; KEGG: fra:Francci3_3799 UvrD/REP helicase; UvrD/REP helicase 1602119..1605340 Nocardioides sp. JS614 4595660 YP_922711.1 CDS Noca_1510 NC_008699.1 1605404 1605994 D hypothetical protein 1605404..1605994 Nocardioides sp. JS614 4595661 YP_922712.1 CDS Noca_1511 NC_008699.1 1605994 1606788 D hypothetical protein 1605994..1606788 Nocardioides sp. JS614 4595662 YP_922713.1 CDS Noca_1512 NC_008699.1 1606846 1607916 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sma:SAV1562 oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(1606846..1607916) Nocardioides sp. JS614 4595663 YP_922714.1 CDS Noca_1513 NC_008699.1 1607944 1608675 R TIGRFAM: purine nucleoside phosphorylase; PFAM: purine and other phosphorylases, family 1; KEGG: oih:OB2345 purine nucleoside phosphorylase; purine-nucleoside phosphorylase complement(1607944..1608675) Nocardioides sp. JS614 4595664 YP_922715.1 CDS Noca_1514 NC_008699.1 1608707 1609630 D PFAM: NUDIX hydrolase; KEGG: tfu:Tfu_0527 conserved hypothetical protein; NUDIX hydrolase 1608707..1609630 Nocardioides sp. JS614 4595665 YP_922716.1 CDS Noca_1515 NC_008699.1 1609728 1609976 R TIGRFAM: Glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: sco:SCO5187 glutaredoxin-like protein; glutaredoxin-like protein complement(1609728..1609976) Nocardioides sp. JS614 4595666 YP_922717.1 CDS Noca_1516 NC_008699.1 1610054 1612120 D PFAM: UvrD/REP helicase; HRDC domain protein; KEGG: sco:SCO5188 putative ATP-dependent DNA helicase; UvrD/REP helicase 1610054..1612120 Nocardioides sp. JS614 4595667 YP_922718.1 CDS Noca_1517 NC_008699.1 1612695 1613018 D PFAM: HMG-I and HMG-Y, DNA-binding domain protein; transcription factor WhiB; KEGG: sco:SCO5190 DNA-binding protein; transcription factor WhiB 1612695..1613018 Nocardioides sp. JS614 4595668 YP_922719.1 CDS Noca_1518 NC_008699.1 1613083 1613421 R hypothetical protein complement(1613083..1613421) Nocardioides sp. JS614 4595669 YP_922720.1 CDS Noca_1519 NC_008699.1 1613807 1614556 R KEGG: mmc:Mmcs_1412 hypothetical protein; hypothetical protein complement(1613807..1614556) Nocardioides sp. JS614 4595670 YP_922721.1 CDS Noca_1520 NC_008699.1 1614709 1614867 R KEGG: fra:Francci3_1839 hypothetical protein; hypothetical protein complement(1614709..1614867) Nocardioides sp. JS614 4595671 YP_922722.1 CDS Noca_1521 NC_008699.1 1615060 1615899 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rme:Rmet_5150 enoyl-CoA hydratase/isomerase; short chain enoyl-CoA hydratase / enoyl-CoA hydratase 1615060..1615899 Nocardioides sp. JS614 4595672 YP_922723.1 CDS Noca_1522 NC_008699.1 1616182 1617318 D PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: nfa:nfa41810 hypothetical protein; hypothetical protein 1616182..1617318 Nocardioides sp. JS614 4595673 YP_922724.1 CDS Noca_1523 NC_008699.1 1617343 1617855 D PFAM: protein of unknown function DUF45; KEGG: sco:SCO5194 hypothetical protein; hypothetical protein 1617343..1617855 Nocardioides sp. JS614 4595674 YP_922725.1 CDS Noca_1524 NC_008699.1 1617852 1618418 R PFAM: NUDIX hydrolase; KEGG: tfu:Tfu_0535 hypothetical protein; NUDIX hydrolase complement(1617852..1618418) Nocardioides sp. JS614 4595675 YP_922726.1 CDS Noca_1525 NC_008699.1 1618415 1619758 R KEGG: sma:SAV3061 hypothetical protein; hypothetical protein complement(1618415..1619758) Nocardioides sp. JS614 4595676 YP_922727.1 CDS Noca_1526 NC_008699.1 1619817 1620242 D PFAM: molybdopterin biosynthesis MoaE; KEGG: sma:SAV3059 putative molybdopterin biosynthesis protein E; molybdopterin synthase subunit MoaE 1619817..1620242 Nocardioides sp. JS614 4595677 YP_922728.1 CDS Noca_1527 NC_008699.1 1620363 1620614 D hypothetical protein 1620363..1620614 Nocardioides sp. JS614 4595678 YP_922729.1 CDS Noca_1528 NC_008699.1 1620638 1621702 D PFAM: PDZ/DHR/GLGF domain protein; KEGG: fal:FRAAL6029 putative secreted protein; PDZ/DHR/GLGF domain-containing protein 1620638..1621702 Nocardioides sp. JS614 4595679 YP_922730.1 CDS Noca_1529 NC_008699.1 1621699 1622307 D KEGG: sma:SAV3056 hypothetical protein; hypothetical protein 1621699..1622307 Nocardioides sp. JS614 4595680 YP_922731.1 CDS Noca_1530 NC_008699.1 1622315 1625329 D PFAM: protein of unknown function UPF0182; KEGG: sco:SCO5204 integral membrane protein; hypothetical protein 1622315..1625329 Nocardioides sp. JS614 4595681 YP_922732.1 CDS Noca_1531 NC_008699.1 1626088 1627305 R PFAM: major facilitator superfamily MFS_1; KEGG: bpm:BURPS1710b_A1561 light regulation of gametogenesis6 protein; major facilitator transporter complement(1626088..1627305) Nocardioides sp. JS614 4595683 YP_922733.1 CDS Noca_1532 NC_008699.1 1627316 1628674 R TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: rha:RHA1_ro03075 probable chromate transporter, chromate ion transporter family; chromate transporter complement(1627316..1628674) Nocardioides sp. JS614 4595684 YP_922734.1 CDS Noca_1533 NC_008699.1 1628699 1629124 R KEGG: rha:RHA1_ro03074 probable chromate resistance protein; putative chromate resistance protein complement(1628699..1629124) Nocardioides sp. JS614 4595685 YP_922735.1 CDS Noca_1534 NC_008699.1 1629121 1629666 R KEGG: rha:RHA1_ro03073 possible chromate resistance protein; hypothetical protein complement(1629121..1629666) Nocardioides sp. JS614 4595686 YP_922736.1 CDS Noca_1535 NC_008699.1 1629684 1630727 D KEGG: rha:RHA1_ro03072 possible surface antigen protein; putative surface antigen protein 1629684..1630727 Nocardioides sp. JS614 4595687 YP_922737.1 CDS Noca_1536 NC_008699.1 1630819 1631049 D TIGRFAM: DNA binding domain, excisionase family; KEGG: rxy:Rxyl_1923 phage transcriptional regulator, AlpA; DNA binding domain-containing protein 1630819..1631049 Nocardioides sp. JS614 4595688 YP_922738.1 CDS Noca_1537 NC_008699.1 1631277 1631864 D hypothetical protein 1631277..1631864 Nocardioides sp. JS614 4595689 YP_922739.1 CDS Noca_1538 NC_008699.1 1631858 1632799 D KEGG: fra:Francci3_1784 hypothetical protein; hypothetical protein 1631858..1632799 Nocardioides sp. JS614 4595690 YP_922740.1 CDS Noca_1539 NC_008699.1 1632796 1633488 D PFAM: SAF domain; KEGG: sco:SCP1.167 hypothetical protein; SAF domain-containing protein 1632796..1633488 Nocardioides sp. JS614 4595691 YP_922741.1 CDS Noca_1540 NC_008699.1 1633488 1634294 D KEGG: sco:SCO4525 hypothetical protein; hypothetical protein 1633488..1634294 Nocardioides sp. JS614 4595692 YP_922742.1 CDS Noca_1541 NC_008699.1 1634291 1635604 D PFAM: type II secretion system protein E; KEGG: sco:SCO4526 protein kinase; type II secretion system protein E 1634291..1635604 Nocardioides sp. JS614 4595481 YP_922743.1 CDS Noca_1542 NC_008699.1 1635595 1636494 D KEGG: sco:SCO4527 integral membrane protein; integral membrane protein 1635595..1636494 Nocardioides sp. JS614 4595482 YP_922744.1 CDS Noca_1543 NC_008699.1 1636491 1637393 D PFAM: type II secretion system protein; KEGG: sco:SCO4528 integral membrane protein; type II secretion system protein 1636491..1637393 Nocardioides sp. JS614 4595483 YP_922745.1 CDS Noca_1544 NC_008699.1 1637416 1637604 D hypothetical protein 1637416..1637604 Nocardioides sp. JS614 4595484 YP_922746.1 CDS Noca_1545 NC_008699.1 1637616 1638002 D KEGG: fra:Francci3_1733 putative membrane protein; hypothetical protein 1637616..1638002 Nocardioides sp. JS614 4595485 YP_922747.1 CDS Noca_1546 NC_008699.1 1637999 1638412 D PFAM: TadE family protein; KEGG: sco:SCP1.174 hypothetical protein; TadE family protein 1637999..1638412 Nocardioides sp. JS614 4595486 YP_922748.1 CDS Noca_1547 NC_008699.1 1638409 1638816 D KEGG: fra:Francci3_3328 putative membrane protein; hypothetical protein 1638409..1638816 Nocardioides sp. JS614 4595487 YP_922749.1 CDS Noca_1548 NC_008699.1 1638813 1641968 D PFAM: Peptidoglycan-binding LysM; KEGG: sma:SAV192 hypothetical protein; peptidoglycan-binding LysM 1638813..1641968 Nocardioides sp. JS614 4595488 YP_922750.1 CDS Noca_1549 NC_008699.1 1642062 1643333 R PFAM: major facilitator superfamily MFS_1; KEGG: fra:Francci3_2321 major facilitator superfamily MFS_1; major facilitator transporter complement(1642062..1643333) Nocardioides sp. JS614 4595489 YP_922751.1 CDS Noca_1550 NC_008699.1 1643330 1644064 R PFAM: polysaccharide deacetylase; KEGG: sco:SCO1129 secreted deacetylase; polysaccharide deacetylase complement(1643330..1644064) Nocardioides sp. JS614 4595490 YP_922752.1 CDS Noca_1551 NC_008699.1 1644061 1645179 R KEGG: sco:SCO1126 hypothetical protein; hypothetical protein complement(1644061..1645179) Nocardioides sp. JS614 4595491 YP_922753.1 CDS Noca_1552 NC_008699.1 1645263 1645913 R KEGG: pac:PPA2014 conserved membrane protein (DedA family); DedA family membrane protein complement(1645263..1645913) Nocardioides sp. JS614 4595492 YP_922754.1 CDS Noca_1553 NC_008699.1 1646203 1646826 D PFAM: phosphoesterase, PA-phosphatase related; KEGG: sco:SCO4133 integral membrane protein; undecaprenyl-diphosphatase 1646203..1646826 Nocardioides sp. JS614 4595493 YP_922755.1 CDS Noca_1554 NC_008699.1 1646823 1647563 D KEGG: fal:FRAAL3677 hypothetical protein; putative DedA family membrane protein; hypothetical protein 1646823..1647563 Nocardioides sp. JS614 4595494 YP_922756.1 CDS Noca_1555 NC_008699.1 1647779 1649308 D KEGG: sma:SAV1313 hypothetical protein; hypothetical protein 1647779..1649308 Nocardioides sp. JS614 4595495 YP_922757.1 CDS Noca_1556 NC_008699.1 1649434 1650414 D KEGG: fra:Francci3_2388 hypothetical protein; hypothetical protein 1649434..1650414 Nocardioides sp. JS614 4595496 YP_922758.1 CDS Noca_1557 NC_008699.1 1650477 1651451 D hypothetical protein 1650477..1651451 Nocardioides sp. JS614 4595497 YP_922759.1 CDS Noca_1558 NC_008699.1 1651541 1653235 D KEGG: bbr:BB1276 putative integral membrane protein; hypothetical protein 1651541..1653235 Nocardioides sp. JS614 4595498 YP_922760.1 CDS Noca_1559 NC_008699.1 1653232 1653918 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: fra:Francci3_2401 two component transcriptional regulator, winged helix family; response regulator receiver 1653232..1653918 Nocardioides sp. JS614 4595499 YP_922761.1 CDS Noca_1560 NC_008699.1 1653915 1655375 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: fal:FRAAL3820 putative transmembrane sensory transduction histidine kinase for metal resistance; ATPase domain-containing protein 1653915..1655375 Nocardioides sp. JS614 4595500 YP_922762.1 CDS Noca_1561 NC_008699.1 1655454 1656503 D PFAM: phosphoesterase, PA-phosphatase related; KEGG: vpa:VP2408 hypothetical protein; PA-phosphatase-like phosphoesterase 1655454..1656503 Nocardioides sp. JS614 4595501 YP_922763.1 CDS Noca_1562 NC_008699.1 1656560 1657336 D PFAM: glycosyl transferase, family 2; KEGG: fra:Francci3_2271 dolichyl-phosphate beta-D-mannosyltransferase; dolichyl-phosphate beta-D-mannosyltransferase 1656560..1657336 Nocardioides sp. JS614 4595502 YP_922764.1 CDS Noca_1563 NC_008699.1 1657333 1659564 D PFAM: glycosyl transferase, group 1; KEGG: mac:MA0798 N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein; group 1 glycosyl transferase 1657333..1659564 Nocardioides sp. JS614 4595503 YP_922765.1 CDS Noca_1564 NC_008699.1 1659572 1660321 D PFAM: LmbE family protein; KEGG: mpa:MAP2993 hypothetical protein; LmbE family protein 1659572..1660321 Nocardioides sp. JS614 4595504 YP_922766.1 CDS Noca_1565 NC_008699.1 1660568 1661371 D hypothetical protein 1660568..1661371 Nocardioides sp. JS614 4595505 YP_922767.1 CDS Noca_1566 NC_008699.1 1661368 1661652 D hypothetical protein 1661368..1661652 Nocardioides sp. JS614 4595506 YP_922768.1 CDS Noca_1567 NC_008699.1 1661649 1662371 D hypothetical protein 1661649..1662371 Nocardioides sp. JS614 4595507 YP_922769.1 CDS Noca_1568 NC_008699.1 1662368 1662640 D hypothetical protein 1662368..1662640 Nocardioides sp. JS614 4595508 YP_922770.1 CDS Noca_1569 NC_008699.1 1662640 1663419 D hypothetical protein 1662640..1663419 Nocardioides sp. JS614 4595509 YP_922771.1 CDS Noca_1570 NC_008699.1 1663416 1664789 D KEGG: fal:FRAAL0037 hypothetical protein; putative membrane protein; hypothetical protein 1663416..1664789 Nocardioides sp. JS614 4595510 YP_922772.1 CDS Noca_1571 NC_008699.1 1664786 1666294 D KEGG: fal:FRAAL0036 putative integral membrane protein; hypothetical protein 1664786..1666294 Nocardioides sp. JS614 4595511 YP_922773.1 CDS Noca_1572 NC_008699.1 1666297 1667787 D KEGG: sco:SCO6878 ATP-binding protein; ATP-binding protein 1666297..1667787 Nocardioides sp. JS614 4595512 YP_922774.1 CDS Noca_1573 NC_008699.1 1667791 1668837 D PFAM: peptidase M23B; KEGG: blo:BL0895 narrowly conserved hypothetical protein; peptidase M23B 1667791..1668837 Nocardioides sp. JS614 4595513 YP_922775.1 CDS Noca_1574 NC_008699.1 1668842 1669192 D KEGG: rha:RHA1_ro09096 hypothetical protein; hypothetical protein 1668842..1669192 Nocardioides sp. JS614 4595514 YP_922776.1 CDS Noca_1575 NC_008699.1 1669238 1669693 D hypothetical protein 1669238..1669693 Nocardioides sp. JS614 4595515 YP_922777.1 CDS Noca_1576 NC_008699.1 1669690 1671051 D KEGG: sma:SAV4509 conjugative transfer gene complex protein; Type IV secretory pathway VirD4 components-like protein 1669690..1671051 Nocardioides sp. JS614 4595516 YP_922778.1 CDS Noca_1577 NC_008699.1 1671048 1671587 D hypothetical protein 1671048..1671587 Nocardioides sp. JS614 4595517 YP_922779.1 CDS Noca_1578 NC_008699.1 1671629 1672627 R hypothetical protein complement(1671629..1672627) Nocardioides sp. JS614 4595518 YP_922780.1 CDS Noca_1579 NC_008699.1 1672624 1673094 R KEGG: rpc:RPC_4006 hypothetical protein; hypothetical protein complement(1672624..1673094) Nocardioides sp. JS614 4595519 YP_922781.1 CDS Noca_1580 NC_008699.1 1673181 1678574 R PFAM: TOPRIM domain protein; DNA primase catalytic core, N-terminal domain; SMART: Toprim sub domain protein; KEGG: mmc:Mmcs_1430 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member-like protein; DNA primase catalytic core complement(1673181..1678574) Nocardioides sp. JS614 4595520 YP_922782.1 CDS Noca_1581 NC_008699.1 1678648 1679652 R KEGG: sco:SCP1.352 hypothetical protein; hypothetical protein complement(1678648..1679652) Nocardioides sp. JS614 4596489 YP_922783.1 CDS Noca_1582 NC_008699.1 1679672 1681123 R PFAM: ParB domain protein nuclease; KEGG: rha:RHA1_ro03182 possible chromosome partitioning protein-like protein; nuclease complement(1679672..1681123) Nocardioides sp. JS614 4596490 YP_922784.1 CDS Noca_1583 NC_008699.1 1681780 1682076 D hypothetical protein 1681780..1682076 Nocardioides sp. JS614 4596491 YP_922785.1 CDS Noca_1584 NC_008699.1 1682076 1683383 D hypothetical protein 1682076..1683383 Nocardioides sp. JS614 4596492 YP_922786.1 CDS Noca_1585 NC_008699.1 1683438 1684562 R KEGG: pat:Patl_3755 hypothetical protein; hypothetical protein complement(1683438..1684562) Nocardioides sp. JS614 4596493 YP_922787.1 CDS Noca_1586 NC_008699.1 1684674 1685588 R PFAM: restriction endonuclease; KEGG: mbo:Mb2557c probable restriction system protein MRR; restriction endonuclease complement(1684674..1685588) Nocardioides sp. JS614 4596494 YP_922788.1 CDS Noca_1587 NC_008699.1 1685758 1686423 D KEGG: stc:str1376 type II restriction-modification system modification subunit; type II restriction-modification system modification subunit 1685758..1686423 Nocardioides sp. JS614 4596495 YP_922789.1 CDS Noca_1588 NC_008699.1 1686416 1689700 D PFAM: type III restriction enzyme, res subunit; SMART: DEAD-like helicases-like; KEGG: spd:SPD_1079 type II restriction endonuclease, putative; type III restriction enzyme, res subunit 1686416..1689700 Nocardioides sp. JS614 4596496 YP_922790.1 CDS Noca_1589 NC_008699.1 1689702 1690757 D PFAM: Eco57I restriction endonuclease; KEGG: stc:str1375 type II restriction-modification system restriction subunit; Eco57I restriction endonuclease 1689702..1690757 Nocardioides sp. JS614 4596497 YP_922791.1 CDS Noca_1590 NC_008699.1 1690904 1691500 R PFAM: phage integrase family protein; KEGG: fal:FRAAL6356 putative tyrosine recombinase XerD; phage integrase family protein complement(1690904..1691500) Nocardioides sp. JS614 4596498 YP_922792.1 CDS Noca_1591 NC_008699.1 1691527 1691838 D PFAM: transposase IS3/IS911 family protein; KEGG: cef:CE2618 putative transposase; transposase IS3/IS911 family protein 1691527..1691838 Nocardioides sp. JS614 4596499 YP_922793.1 CDS Noca_1592 NC_008699.1 1692054 1692806 D PFAM: Integrase, catalytic region; KEGG: cef:CE2619 putative transposase; integrase catalytic subunit 1692054..1692806 Nocardioides sp. JS614 4596500 YP_922794.1 CDS Noca_1593 NC_008699.1 1692831 1693385 R KEGG: fal:FRAAL6356 putative tyrosine recombinase XerD; putative tyrosine recombinase XerD complement(1692831..1693385) Nocardioides sp. JS614 4596501 YP_922795.1 CDS Noca_1594 NC_008699.1 1693839 1694123 R KEGG: sme:SMc02477 hypothetical protein; hypothetical protein complement(1693839..1694123) Nocardioides sp. JS614 4596503 YP_922796.1 CDS Noca_1595 NC_008699.1 1694650 1696026 R PFAM: phosphoesterase, PA-phosphatase related; KEGG: fal:FRAAL0031 conserved hypothetical protein; putative integral membrane protein; PA-phosphatase-like phosphoesterase complement(1694650..1696026) Nocardioides sp. JS614 4599974 YP_922797.1 CDS Noca_1596 NC_008699.1 1696103 1696507 R PFAM: mannose-6-phosphate isomerase, type II; Cupin 2, conserved barrel domain protein; KEGG: syn:slr0493 putative mannose-1-phosphate guanylyltransferase; mannose-6-phosphate isomerase complement(1696103..1696507) Nocardioides sp. JS614 4599975 YP_922798.1 CDS Noca_1597 NC_008699.1 1696557 1697021 R PFAM: GtrA family protein; KEGG: tfu:Tfu_2548 hypothetical protein; GtrA family protein complement(1696557..1697021) Nocardioides sp. JS614 4599976 YP_922799.1 CDS Noca_1598 NC_008699.1 1697115 1697795 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rha:RHA1_ro08012 response regulator, two-component system; response regulator receiver 1697115..1697795 Nocardioides sp. JS614 4599977 YP_922800.1 CDS Noca_1599 NC_008699.1 1697792 1699153 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rha:RHA1_ro08011 sensory histidine kinase; ATPase domain-containing protein 1697792..1699153 Nocardioides sp. JS614 4599978 YP_922801.1 CDS Noca_1600 NC_008699.1 1699156 1699668 D hypothetical protein 1699156..1699668 Nocardioides sp. JS614 4599979 YP_922802.1 CDS Noca_1601 NC_008699.1 1699722 1700594 R PFAM: protein of unknown function DUF347; KEGG: fal:FRAAL6358 putative integral membrane protein (partial match); hypothetical protein complement(1699722..1700594) Nocardioides sp. JS614 4599980 YP_922803.1 CDS Noca_1602 NC_008699.1 1700591 1702201 R KEGG: fra:Francci3_2390 glycosyl transferase, family 39; hypothetical protein complement(1700591..1702201) Nocardioides sp. JS614 4599981 YP_922804.1 CDS Noca_1603 NC_008699.1 1702211 1703032 R PFAM: phosphoesterase; KEGG: fal:FRAAL3218 putative acid phosphatase; phosphatidylinositol-3-phosphate phosphatase complement(1702211..1703032) Nocardioides sp. JS614 4599982 YP_922805.1 CDS Noca_1604 NC_008699.1 1703236 1704081 R PFAM: glycosyl transferase, family 2; KEGG: ade:Adeh_2624 dolichyl-phosphate beta-D-mannosyltransferase; dolichyl-phosphate beta-D-mannosyltransferase complement(1703236..1704081) Nocardioides sp. JS614 4599983 YP_922806.1 CDS Noca_1605 NC_008699.1 1704201 1706894 R PFAM: protein of unknown function DUF214; KEGG: sco:SCO6365 putative integral membrane protein; hypothetical protein complement(1704201..1706894) Nocardioides sp. JS614 4599984 YP_922807.1 CDS Noca_1606 NC_008699.1 1706891 1707616 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rha:RHA1_ro03122 ABC lipoprotein transporter, ATP-binding component; ABC transporter-like protein complement(1706891..1707616) Nocardioides sp. JS614 4599985 YP_922808.1 CDS Noca_1607 NC_008699.1 1707613 1708356 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO6367 ABC transporter ATP-binding protein; ABC transporter-like protein complement(1707613..1708356) Nocardioides sp. JS614 4599986 YP_922809.1 CDS Noca_1608 NC_008699.1 1708360 1709070 R KEGG: sco:SCO6368 lipoprotein; lipoprotein complement(1708360..1709070) Nocardioides sp. JS614 4599987 YP_922810.1 CDS Noca_1609 NC_008699.1 1709243 1709566 R KEGG: rha:RHA1_ro08010 hypothetical protein; hypothetical protein complement(1709243..1709566) Nocardioides sp. JS614 4599988 YP_922811.1 CDS Noca_1610 NC_008699.1 1709691 1710389 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rha:RHA1_ro08012 response regulator, two-component system; two component transcriptional regulator 1709691..1710389 Nocardioides sp. JS614 4599989 YP_922812.1 CDS Noca_1611 NC_008699.1 1710386 1711744 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rha:RHA1_ro08011 sensory histidine kinase; ATPase domain-containing protein 1710386..1711744 Nocardioides sp. JS614 4599990 YP_922813.1 CDS Noca_1612 NC_008699.1 1711872 1712303 R KEGG: sil:SPOA0410 hypothetical protein; hypothetical protein complement(1711872..1712303) Nocardioides sp. JS614 4599991 YP_922814.1 CDS Noca_1613 NC_008699.1 1712465 1713142 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rha:RHA1_ro08549 response regulator, two-component system; response regulator receiver 1712465..1713142 Nocardioides sp. JS614 4599992 YP_922815.1 CDS Noca_1614 NC_008699.1 1713139 1714506 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rha:RHA1_ro00073 sensor kinase, two-component system; ATPase domain-containing protein 1713139..1714506 Nocardioides sp. JS614 4599993 YP_922816.1 CDS Noca_1615 NC_008699.1 1714744 1715850 R PFAM: phage integrase family protein; KEGG: fal:FRAAL6356 putative tyrosine recombinase XerD; phage integrase family protein complement(1714744..1715850) Nocardioides sp. JS614 4599994 YP_922817.1 CDS Noca_1616 NC_008699.1 1716341 1716676 R TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: rha:RHA1_ro08265 possible carboxymuconolactone decarboxylase; alkylhydroperoxidase complement(1716341..1716676) Nocardioides sp. JS614 4599995 YP_922818.1 CDS Noca_1617 NC_008699.1 1716874 1717815 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: afu:AF2137 hypothetical protein; cation diffusion facilitator family transporter complement(1716874..1717815) Nocardioides sp. JS614 4599996 YP_922819.1 CDS Noca_1618 NC_008699.1 1717812 1718135 R KEGG: gme:Gmet_1011 antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase complement(1717812..1718135) Nocardioides sp. JS614 4599997 YP_922820.1 CDS Noca_1619 NC_008699.1 1718289 1718996 D PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: lsl:LSL_1782 transcriptional regulator, crp family; cyclic nucleotide-binding protein 1718289..1718996 Nocardioides sp. JS614 4599998 YP_922821.1 CDS Noca_1621 NC_008699.1 1719444 1720130 R KEGG: ade:Adeh_0447 hypothetical protein; hypothetical protein complement(1719444..1720130) Nocardioides sp. JS614 4600000 YP_922822.1 CDS Noca_1622 NC_008699.1 1720298 1720888 D PFAM: cytochrome c oxidase, subunit II; KEGG: tdn:Tmden_0103 putative cytochrome c oxidase subunit II; cytochrome c oxidase subunit II 1720298..1720888 Nocardioides sp. JS614 4600001 YP_922823.1 CDS Noca_1623 NC_008699.1 1720885 1722570 D PFAM: cytochrome c oxidase, subunit I; KEGG: tdn:Tmden_0104 cytochrome c oxidase, subunit I; cytochrome c oxidase subunit I 1720885..1722570 Nocardioides sp. JS614 4600002 YP_922824.1 CDS tnaA NC_008699.1 1722627 1724015 R tryptophan indole-lyase; catalyzes the formation of indole and pyruvate from tryptophan; tryptophanase complement(1722627..1724015) Nocardioides sp. JS614 4600003 YP_922825.1 CDS Noca_1625 NC_008699.1 1724137 1724583 D PFAM: regulatory protein, AsnC/Lrp family; helix-turn-helix, HxlR type; KEGG: tfu:Tfu_0920 regulatory proteins, AsnC/Lrp; AsnC family transcriptional regulator 1724137..1724583 Nocardioides sp. JS614 4600004 YP_922826.1 CDS Noca_1626 NC_008699.1 1724724 1726055 D PFAM: amidohydrolase; Amidohydrolase 3; KEGG: fra:Francci3_0845 amidohydrolase; amidohydrolase 1724724..1726055 Nocardioides sp. JS614 4600005 YP_922827.1 CDS Noca_1627 NC_008699.1 1726096 1727619 D PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: mta:Moth_2000 pyridoxal-5'-phosphate-dependent enzyme, beta subunit; pyridoxal-5'-phosphate-dependent enzyme subunit beta 1726096..1727619 Nocardioides sp. JS614 4600006 YP_922828.1 CDS Noca_1628 NC_008699.1 1727616 1729001 D PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: hal:VNG2430G threonine synthase; pyridoxal-5'-phosphate-dependent enzyme subunit beta 1727616..1729001 Nocardioides sp. JS614 4600007 YP_922829.1 CDS Noca_1629 NC_008699.1 1729001 1730425 D PFAM: amidohydrolase; Amidohydrolase 3; KEGG: mta:Moth_1957 amidohydrolase; amidohydrolase 1729001..1730425 Nocardioides sp. JS614 4600008 YP_922830.1 CDS Noca_1630 NC_008699.1 1730422 1731423 D PFAM: luciferase family protein; KEGG: hma:pNG7255 F420-dependent N5,N10-methylene-tetrahydromethanopterin reductase; methylenetetrahydromethanopterin reductase 1730422..1731423 Nocardioides sp. JS614 4600009 YP_922831.1 CDS Noca_1631 NC_008699.1 1731439 1732392 D KEGG: pho:PH0720 aspartate carbamoyltransferase catalytic chain; TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; aspartate carbamoyltransferase 1731439..1732392 Nocardioides sp. JS614 4600010 YP_922832.1 CDS Noca_1632 NC_008699.1 1732410 1733393 D PFAM: aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; KEGG: mta:Moth_1996 ornithine carbamoyltransferase; ornithine carbamoyltransferase 1732410..1733393 Nocardioides sp. JS614 4600011 YP_922833.1 CDS Noca_1633 NC_008699.1 1733416 1734141 D PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: ecc:c3458 hypothetical protein YgfM; molybdopterin dehydrogenase 1733416..1734141 Nocardioides sp. JS614 4600012 YP_922834.1 CDS Noca_1634 NC_008699.1 1734138 1737056 D PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: hma:pNG7246 possible hypoxanthine oxidase XdhD; xanthine dehydrogenase, molybdenum binding subunit apoprotein 1734138..1737056 Nocardioides sp. JS614 4600013 YP_922835.1 CDS Noca_1635 NC_008699.1 1737070 1738473 D KEGG: sus:Acid_7659 dihydropyrimidinase; TIGRFAM: dihydropyrimidinase; PFAM: amidohydrolase; Amidohydrolase 3; dihydropyrimidinase 1737070..1738473 Nocardioides sp. JS614 4600014 YP_922836.1 CDS Noca_1636 NC_008699.1 1738566 1740038 D PFAM: ferredoxin; molybdopterin dehydrogenase, FAD-binding; [2Fe-2S]-binding domain protein; CO dehydrogenase flavoprotein domain protein; KEGG: sco:SCO4971 putative dehydrogenase; molybdopterin dehydrogenase 1738566..1740038 Nocardioides sp. JS614 4600015 YP_922837.1 CDS Noca_1637 NC_008699.1 1740035 1742338 D PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: dge:Dgeo_2604 xanthine dehydrogenase; xanthine oxidase 1740035..1742338 Nocardioides sp. JS614 4600016 YP_922838.1 CDS Noca_1638 NC_008699.1 1742340 1743200 D PFAM: protein of unknown function DUF182; KEGG: sco:SCO4973 xanthine dehydrogenase accessory factor; molybdenum cofactor sulfurylase 1742340..1743200 Nocardioides sp. JS614 4600017 YP_922839.1 CDS Noca_1639 NC_008699.1 1743236 1744234 R KEGG: mxa:MXAN_7473 hypothetical protein; hypothetical protein complement(1743236..1744234) Nocardioides sp. JS614 4600018 YP_922840.1 CDS Noca_1640 NC_008699.1 1744326 1745627 R PFAM: protein of unknown function DUF323; KEGG: bbr:BB1966 hypothetical protein; hypothetical protein complement(1744326..1745627) Nocardioides sp. JS614 4600019 YP_922841.1 CDS Noca_1641 NC_008699.1 1745761 1746564 R PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: rxy:Rxyl_1332 transcriptional regulator, Crp/Fnr family; cyclic nucleotide-binding protein complement(1745761..1746564) Nocardioides sp. JS614 4600020 YP_922842.1 CDS Noca_1642 NC_008699.1 1746657 1747259 R hypothetical protein complement(1746657..1747259) Nocardioides sp. JS614 4600021 YP_922843.1 CDS Noca_1643 NC_008699.1 1747388 1747933 D hypothetical protein 1747388..1747933 Nocardioides sp. JS614 4600022 YP_922844.1 CDS Noca_1644 NC_008699.1 1747943 1748263 R PFAM: protein of unknown function DUF427; KEGG: dge:Dgeo_1745 protein of unknown function DUF427; hypothetical protein complement(1747943..1748263) Nocardioides sp. JS614 4600023 YP_922845.1 CDS Noca_1645 NC_008699.1 1748427 1749158 D TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sco:SCO3446 putative dehalogenase; haloacid dehalogenase 1748427..1749158 Nocardioides sp. JS614 4600024 YP_922846.1 CDS Noca_1646 NC_008699.1 1749234 1749635 R PFAM: regulatory protein, MerR; KEGG: mbo:Mb3367 probable transcriptional regulatory protein (probably MerR-family); MerR family transcriptional regulator complement(1749234..1749635) Nocardioides sp. JS614 4600025 YP_922847.1 CDS Noca_1647 NC_008699.1 1749690 1749989 D KEGG: nfa:pnf2590 putative alkylmercury lyase; putative alkylmercury lyase 1749690..1749989 Nocardioides sp. JS614 4600026 YP_922848.1 CDS Noca_1648 NC_008699.1 1750214 1751566 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: sep:SE0080 regulatory protein; pyridine nucleotide-disulfide oxidoreductase dimerisation region 1750214..1751566 Nocardioides sp. JS614 4600027 YP_922849.1 CDS Noca_1649 NC_008699.1 1751756 1752775 R catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate; 4-hydroxy-2-ketovalerate aldolase complement(1751756..1752775) Nocardioides sp. JS614 4600028 YP_922850.1 CDS Noca_1650 NC_008699.1 1752772 1753716 R catalyzes the formation of acetyl-CoA from acetalaldehyde; acetaldehyde dehydrogenase complement(1752772..1753716) Nocardioides sp. JS614 4600029 YP_922851.1 CDS Noca_1651 NC_008699.1 1753709 1754536 R PFAM: Hydratase/decarboxylase; KEGG: nfa:nfa33180 putative hydratase; 4-oxalocrotonate decarboxylase complement(1753709..1754536) Nocardioides sp. JS614 4600030 YP_922852.1 CDS Noca_1652 NC_008699.1 1754606 1755379 D PFAM: regulatory proteins, IclR; KEGG: rha:RHA1_ro08086 transcriptional regulator, IclR family; IclR family transcriptional regulator 1754606..1755379 Nocardioides sp. JS614 4600031 YP_922853.1 CDS Noca_1653 NC_008699.1 1755422 1755973 R hypothetical protein complement(1755422..1755973) Nocardioides sp. JS614 4600032 YP_922854.1 CDS Noca_1654 NC_008699.1 1756107 1757177 R PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: cjk:jk0549 putative lipase/esterase LipN; alpha/beta hydrolase domain-containing protein complement(1756107..1757177) Nocardioides sp. JS614 4600033 YP_922855.1 CDS Noca_1655 NC_008699.1 1757174 1758823 R PFAM: carbohydrate kinase, FGGY; KEGG: mxa:MXAN_2879 putative xylulokinase; carbohydrate kinase complement(1757174..1758823) Nocardioides sp. JS614 4600034 YP_922856.1 CDS Noca_1656 NC_008699.1 1758820 1761081 R PFAM: class II aldolase/adducin family protein; aminotransferase class-III; KEGG: psp:PSPPH_2738 glutamate-1-semialdehyde aminotransferase; aminotransferase complement(1758820..1761081) Nocardioides sp. JS614 4600035 YP_922857.1 CDS Noca_1657 NC_008699.1 1761215 1762474 D KEGG: fra:Francci3_3797 hypothetical protein; hypothetical protein 1761215..1762474 Nocardioides sp. JS614 4600036 YP_922858.1 CDS Noca_1658 NC_008699.1 1762485 1763861 D converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 1762485..1763861 Nocardioides sp. JS614 4600037 YP_922859.1 CDS Noca_1659 NC_008699.1 1763879 1764436 R hypothetical protein complement(1763879..1764436) Nocardioides sp. JS614 4600038 YP_922860.1 CDS Noca_1660 NC_008699.1 1764517 1765302 R PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: rxy:Rxyl_1803 transcriptional regulator, Crp/Fnr family; Crp/FNR family transcriptional regulator complement(1764517..1765302) Nocardioides sp. JS614 4600039 YP_922861.1 CDS Noca_1661 NC_008699.1 1765427 1765759 D KEGG: sco:SCO4689 hypothetical protein; hypothetical protein 1765427..1765759 Nocardioides sp. JS614 4600040 YP_922862.1 CDS Noca_1662 NC_008699.1 1765774 1767744 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: cgb:cg3295 cation transport ATPase; heavy metal translocating P-type ATPase complement(1765774..1767744) Nocardioides sp. JS614 4600041 YP_922863.1 CDS Noca_1663 NC_008699.1 1767744 1767977 R PFAM: Heavy metal transport/detoxification protein; KEGG: cgb:cg1328 putative copper chaperone; heavy metal transport/detoxification protein complement(1767744..1767977) Nocardioides sp. JS614 4600042 YP_922864.1 CDS Noca_1664 NC_008699.1 1768207 1768776 R PFAM: regulatory protein, TetR; KEGG: mmc:Mmcs_0484 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(1768207..1768776) Nocardioides sp. JS614 4600043 YP_922865.1 CDS Noca_1665 NC_008699.1 1768867 1769817 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rha:RHA1_ro06063 probable ABC transporter, ATP-binding component; ABC transporter-like protein 1768867..1769817 Nocardioides sp. JS614 4600044 YP_922866.1 CDS Noca_1666 NC_008699.1 1769814 1771460 D KEGG: rha:RHA1_ro06064 possible ABC antibiotics transporter; putative ABC antibiotics transporter 1769814..1771460 Nocardioides sp. JS614 4600045 YP_922867.1 CDS Noca_1667 NC_008699.1 1771554 1772630 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; KEGG: sru:SRU_2653 3-beta hydroxysteroid dehydrogenase/isomerase family; hypothetical protein 1771554..1772630 Nocardioides sp. JS614 4600046 YP_922868.1 CDS Noca_1668 NC_008699.1 1772642 1774711 D KEGG: rfr:Rfer_1964 putative dehydrogenase; putative dehydrogenase 1772642..1774711 Nocardioides sp. JS614 4600047 YP_922869.1 CDS Noca_1669 NC_008699.1 1774808 1776280 D PFAM: condensation domain protein; protein of unknown function UPF0089; KEGG: sru:SRU_2506 uncharacterized protein family (UPF0089); diacylglycerol O-acyltransferase 1774808..1776280 Nocardioides sp. JS614 4600048 YP_922870.1 CDS Noca_1670 NC_008699.1 1776309 1778561 R PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: mag:amb3735 signal transduction histidine kinase; ATPase domain-containing protein complement(1776309..1778561) Nocardioides sp. JS614 4599709 YP_922871.1 CDS Noca_1671 NC_008699.1 1778558 1778926 R hypothetical protein complement(1778558..1778926) Nocardioides sp. JS614 4599710 YP_922872.1 CDS Noca_1672 NC_008699.1 1779100 1779303 R KEGG: mmr:Mmar10_0244 hypothetical protein; hypothetical protein complement(1779100..1779303) Nocardioides sp. JS614 4599711 YP_922873.1 CDS Noca_1673 NC_008699.1 1779463 1780098 D KEGG: mes:Meso_2289 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; hypothetical protein 1779463..1780098 Nocardioides sp. JS614 4599712 YP_922874.1 CDS Noca_1674 NC_008699.1 1780167 1780985 R KEGG: bha:BH0230 hypothetical protein; hypothetical protein complement(1780167..1780985) Nocardioides sp. JS614 4599713 YP_922875.1 CDS Noca_1675 NC_008699.1 1781277 1783448 D PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like; KEGG: lxx:Lxx07490 ATP-dependent RNA helicase; helicase domain-containing protein 1781277..1783448 Nocardioides sp. JS614 4599714 YP_922876.1 CDS Noca_1676 NC_008699.1 1783525 1784049 D PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rha:RHA1_ro01261 sigma factor, sigma 70 type, group 4; sigma-70 region 2 domain-containing protein 1783525..1784049 Nocardioides sp. JS614 4599715 YP_922877.1 CDS Noca_1677 NC_008699.1 1784046 1784765 D KEGG: rha:RHA1_ro01260 possible membrane protein; hypothetical protein 1784046..1784765 Nocardioides sp. JS614 4599716 YP_922878.1 CDS Noca_1678 NC_008699.1 1784755 1786737 R PFAM: CDP-alcohol phosphatidyltransferase; sulfatase; KEGG: sma:SAV5650 hypothetical protein; CDP-alcohol phosphatidyltransferase complement(1784755..1786737) Nocardioides sp. JS614 4599717 YP_922879.1 CDS Noca_1679 NC_008699.1 1786828 1787910 D KEGG: sma:SAV1797 dehydrogenase; dehydrogenase 1786828..1787910 Nocardioides sp. JS614 4599718 YP_922880.1 CDS Noca_1680 NC_008699.1 1787907 1788278 D KEGG: sco:SCO6650 hypothetical protein; hypothetical protein 1787907..1788278 Nocardioides sp. JS614 4599719 YP_922881.1 CDS Noca_1681 NC_008699.1 1788275 1789186 D PFAM: glycosyl transferase, group 1; KEGG: sma:SAV1795 glycosyl transferase; group 1 glycosyl transferase 1788275..1789186 Nocardioides sp. JS614 4599720 YP_922882.1 CDS Noca_1682 NC_008699.1 1789261 1790007 D KEGG: sma:SAV1793 hypothetical protein; hypothetical protein 1789261..1790007 Nocardioides sp. JS614 4599721 YP_922883.1 CDS Noca_1683 NC_008699.1 1790000 1790695 D PFAM: bifunctional deaminase-reductase domain protein; KEGG: nfa:nfa33100 putative riboflavin-specific deaminase; deaminase-reductase domain-containing protein 1790000..1790695 Nocardioides sp. JS614 4599722 YP_922884.1 CDS ribA NC_008699.1 1790692 1791294 D catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 1790692..1791294 Nocardioides sp. JS614 4599723 YP_922885.1 CDS Noca_1685 NC_008699.1 1791391 1793307 R TIGRFAM: peptidase S26B, signal peptidase; PFAM: cellulose-binding, family II; peptidase S24, S26A and S26B; KEGG: rpd:RPD_3003 outer membrane autotransporter barrel; peptidase S26B, signal peptidase complement(1791391..1793307) Nocardioides sp. JS614 4599724 YP_922886.1 CDS Noca_1686 NC_008699.1 1793326 1793736 R hypothetical protein complement(1793326..1793736) Nocardioides sp. JS614 4599725 YP_922887.1 CDS Noca_1687 NC_008699.1 1793938 1794663 R KEGG: cne:CND01740 ceramidase; hypothetical protein complement(1793938..1794663) Nocardioides sp. JS614 4599726 YP_922888.1 CDS Noca_1688 NC_008699.1 1794738 1796213 D PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: ade:Adeh_2233 transcriptional regulator, GntR family; GntR family transcriptional regulator 1794738..1796213 Nocardioides sp. JS614 4599727 YP_922889.1 CDS Noca_1689 NC_008699.1 1796110 1797438 R PFAM: amino acid permease-associated region; KEGG: bte:BTH_II1129 amino acid permease; amino acid permease-associated protein complement(1796110..1797438) Nocardioides sp. JS614 4599728 YP_922890.1 CDS Noca_1690 NC_008699.1 1797524 1799125 R KEGG: mxa:MXAN_6640 hypothetical protein; hypothetical protein complement(1797524..1799125) Nocardioides sp. JS614 4599729 YP_922891.1 CDS Noca_1691 NC_008699.1 1799236 1799634 R TIGRFAM: cytidyltransferase-related domain; PFAM: Riboflavin kinase / FAD synthetase; cytidylyltransferase; KEGG: ppr:PBPRA2703 putative glycerol-3-phosphate cytidyltransferase; glycerol-3-phosphate cytidylyltransferase complement(1799236..1799634) Nocardioides sp. JS614 4599730 YP_922892.1 CDS Noca_1692 NC_008699.1 1799680 1800942 D PFAM: protein of unknown function DUF445; KEGG: fra:Francci3_2863 protein of unknown function DUF445; hypothetical protein 1799680..1800942 Nocardioides sp. JS614 4599731 YP_922893.1 CDS Noca_1693 NC_008699.1 1800947 1801201 D PFAM: RNA-binding S4 domain protein; KEGG: rha:RHA1_ro03734 hypothetical protein; RNA-binding S4 domain-containing protein 1800947..1801201 Nocardioides sp. JS614 4599732 YP_922894.1 CDS Noca_1694 NC_008699.1 1801287 1801655 R PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: sma:SAV6687 putative FK-506 binding protein, peptidyl-prolyl cis-trans isomerase; FKBP-type peptidylprolyl isomerase complement(1801287..1801655) Nocardioides sp. JS614 4599733 YP_922895.1 CDS Noca_1695 NC_008699.1 1801689 1802729 D PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: fal:FRAAL0362 putative integral membrane protein; stage II sporulation E family protein 1801689..1802729 Nocardioides sp. JS614 4599734 YP_922896.1 CDS Noca_1696 NC_008699.1 1802760 1803191 R PFAM: CBS domain containing protein; KEGG: mpa:MAP2219c hypothetical protein; hypothetical protein complement(1802760..1803191) Nocardioides sp. JS614 4599735 YP_922897.1 CDS Noca_1697 NC_008699.1 1803313 1804188 R TIGRFAM: histidinol-phosphate phosphatase, putative; PFAM: inositol monophosphatase; KEGG: pac:PPA1271 putative inositol monophosphatase; histidinol-phosphate phosphatase complement(1803313..1804188) Nocardioides sp. JS614 4599736 YP_922898.1 CDS Noca_1698 NC_008699.1 1804276 1804677 D hypothetical protein 1804276..1804677 Nocardioides sp. JS614 4599737 YP_922899.1 CDS Noca_1699 NC_008699.1 1804787 1805800 R PFAM: GTPase EngC; KEGG: sma:SAV3043 hypothetical protein; GTPase EngC complement(1804787..1805800) Nocardioides sp. JS614 4599738 YP_922900.1 CDS Noca_1700 NC_008699.1 1805808 1807100 R catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase complement(1805808..1807100) Nocardioides sp. JS614 4599739 YP_922901.1 CDS Noca_1701 NC_008699.1 1807126 1807650 R PFAM: DoxX family protein; KEGG: sco:SCO7372 hypothetical protein; DoxX family protein complement(1807126..1807650) Nocardioides sp. JS614 4599740 YP_922902.1 CDS Noca_1702 NC_008699.1 1807710 1809110 R PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: sco:SCO4117 hypothetical protein; sigma-70 region 2 domain-containing protein complement(1807710..1809110) Nocardioides sp. JS614 4599741 YP_922903.1 CDS Noca_1703 NC_008699.1 1809214 1809963 D hypothetical protein 1809214..1809963 Nocardioides sp. JS614 4599742 YP_922904.1 CDS Noca_1704 NC_008699.1 1810181 1810942 D PFAM: protein of unknown function DUF159; KEGG: rha:RHA1_ro08499 hypothetical protein; hypothetical protein 1810181..1810942 Nocardioides sp. JS614 4599743 YP_922905.1 CDS Noca_1705 NC_008699.1 1810939 1811601 D KEGG: sma:SAV3039 hypothetical protein; hypothetical protein 1810939..1811601 Nocardioides sp. JS614 4599744 YP_922906.1 CDS Noca_1706 NC_008699.1 1811664 1812317 D PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sma:SAV3038 putative RNA polymerase ECF-subfamily sigma factor; sigma-70 region 2 domain-containing protein 1811664..1812317 Nocardioides sp. JS614 4599745 YP_922907.1 CDS Noca_1707 NC_008699.1 1812314 1812592 D KEGG: tfu:Tfu_0549 anti-sigma factor; anti-sigma factor 1812314..1812592 Nocardioides sp. JS614 4599746 YP_922908.1 CDS Noca_1708 NC_008699.1 1812934 1813317 R KEGG: tfu:Tfu_0552 hypothetical protein; thioesterase superfamily protein complement(1812934..1813317) Nocardioides sp. JS614 4599747 YP_922909.1 CDS Noca_1709 NC_008699.1 1813317 1813814 R PFAM: GCN5-related N-acetyltransferase; KEGG: rha:RHA1_ro06470 possible acetyltransferase; N-acetyltransferase GCN5 complement(1813317..1813814) Nocardioides sp. JS614 4599748 YP_922910.1 CDS Noca_1710 NC_008699.1 1813807 1815462 R PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: tfu:Tfu_0553 acetolactate synthase large subunit; hypothetical protein complement(1813807..1815462) Nocardioides sp. JS614 4599749 YP_922911.1 CDS Noca_1711 NC_008699.1 1815473 1816324 R KEGG: bat:BAS2855 hypothetical protein; hypothetical protein complement(1815473..1816324) Nocardioides sp. JS614 4598473 YP_922912.1 CDS Noca_1712 NC_008699.1 1816392 1817867 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation/phosphoacceptor; PAS fold-4 domain protein; KEGG: sma:SAV3017 two-component system sensor kinase; histidine kinase, dimerisation/phosphoacceptor 1816392..1817867 Nocardioides sp. JS614 4598474 YP_922913.1 CDS Noca_1713 NC_008699.1 1817934 1818185 R PFAM: transcription factor WhiB; KEGG: pac:PPA1264 probable transcription factor WhiB3; transcription factor WhiB complement(1817934..1818185) Nocardioides sp. JS614 4598475 YP_922914.1 CDS Noca_1714 NC_008699.1 1818412 1818810 D KEGG: mpa:MAP3318c hypothetical protein; hypothetical protein 1818412..1818810 Nocardioides sp. JS614 4598476 YP_922915.1 CDS Noca_1715 NC_008699.1 1818821 1819633 R PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: fal:FRAAL5992 SigH putative RNA polymerase sigma factor; sigma-70 region 2 domain-containing protein complement(1818821..1819633) Nocardioides sp. JS614 4598477 YP_922916.1 CDS Noca_1716 NC_008699.1 1819635 1820066 R KEGG: fal:FRAAL5991 anti-sigma factor (partial match); anti-sigma factor complement(1819635..1820066) Nocardioides sp. JS614 4598478 YP_922917.1 CDS Noca_1717 NC_008699.1 1820615 1821361 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: afu:AF1018 ABC transporter, ATP-binding protein; ABC transporter-like protein complement(1820615..1821361) Nocardioides sp. JS614 4598479 YP_922918.1 CDS Noca_1718 NC_008699.1 1821358 1824096 R PFAM: protein of unknown function DUF214; KEGG: tte:TTE2713 ABC-type transport systems, involved in lipoprotein release, permease components; hypothetical protein complement(1821358..1824096) Nocardioides sp. JS614 4598480 YP_922919.1 CDS Noca_1719 NC_008699.1 1824493 1826388 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dra:DR2404 ABC transporter, ATP-binding protein, MsbA family; ABC transporter-like protein complement(1824493..1826388) Nocardioides sp. JS614 4598481 YP_922920.1 CDS Noca_1720 NC_008699.1 1827628 1828857 D PFAM: transposase IS116/IS110/IS902 family protein; KEGG: chy:CHY_2508 ISChy2, transposase; transposase IS116/IS110/IS902 family protein 1827628..1828857 Nocardioides sp. JS614 4598482 YP_922921.1 CDS Noca_1721 NC_008699.1 1829796 1832396 D KEGG: mmc:Mmcs_1430 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member-like protein; exonuclease V subunit alpha 1829796..1832396 Nocardioides sp. JS614 4598483 YP_922922.1 CDS Noca_1722 NC_008699.1 1832411 1833025 R PFAM: helix-turn-helix domain protein; KEGG: fra:Francci3_0807 transcriptional regulator, XRE family; helix-turn-helix domain-containing protein complement(1832411..1833025) Nocardioides sp. JS614 4598484 YP_922923.1 CDS Noca_1723 NC_008699.1 1833124 1833366 D KEGG: mmc:Mmcs_4829 hypothetical protein; hypothetical protein 1833124..1833366 Nocardioides sp. JS614 4598485 YP_922924.1 CDS Noca_1724 NC_008699.1 1833425 1834561 D PFAM: phage integrase family protein; KEGG: nfa:nfa7110 putative phage integrase; phage integrase family protein 1833425..1834561 Nocardioides sp. JS614 4598486 YP_922925.1 CDS Noca_1725 NC_008699.1 1834591 1834992 R KEGG: sco:SCO5254 superoxide dismutase; superoxide dismutase complement(1834591..1834992) Nocardioides sp. JS614 4598487 YP_922926.1 CDS Noca_1726 NC_008699.1 1835080 1835421 D PFAM: peptidase S24, S26A and S26B; KEGG: sma:SAV2987 signal peptidase protein; peptidase S24, S26A and S26B 1835080..1835421 Nocardioides sp. JS614 4598488 YP_922927.1 CDS Noca_1727 NC_008699.1 1835522 1836712 D PFAM: malic enzyme domain protein; malic enzyme, NAD-binding; KEGG: sma:SAV2981 putative malate dehydrogenase; malate dehydrogenase 1835522..1836712 Nocardioides sp. JS614 4598489 YP_922928.1 CDS Noca_1728 NC_008699.1 1836732 1837709 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: tfu:Tfu_1276 alcohol dehydrogenase; alcohol dehydrogenase 1836732..1837709 Nocardioides sp. JS614 4598490 YP_922929.1 CDS Noca_1729 NC_008699.1 1837706 1838389 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: sma:SAV2750 short chain dehydrogenase; short chain dehydrogenase 1837706..1838389 Nocardioides sp. JS614 4598491 YP_922930.1 CDS Noca_1730 NC_008699.1 1838364 1838969 R PFAM: regulatory protein, TetR; KEGG: mmc:Mmcs_1257 transcriptional regulator, TetR family; regulatory protein TetR complement(1838364..1838969) Nocardioides sp. JS614 4598492 YP_922931.1 CDS Noca_1731 NC_008699.1 1839098 1839334 D KEGG: rha:RHA1_ro01407 hypothetical protein; hypothetical protein 1839098..1839334 Nocardioides sp. JS614 4598493 YP_922932.1 CDS Noca_1732 NC_008699.1 1839464 1839751 R hypothetical protein complement(1839464..1839751) Nocardioides sp. JS614 4598494 YP_922933.1 CDS Noca_1733 NC_008699.1 1839748 1840161 R hypothetical protein complement(1839748..1840161) Nocardioides sp. JS614 4598495 YP_922934.1 CDS Noca_1734 NC_008699.1 1840166 1840822 R KEGG: fra:Francci3_2783 conserved hypothetical protein; hypothetical protein complement(1840166..1840822) Nocardioides sp. JS614 4598496 YP_922935.1 CDS Noca_1735 NC_008699.1 1840968 1841459 D KEGG: bja:blr3900 probable arylsulfatase; arylsulfatase A-like protein 1840968..1841459 Nocardioides sp. JS614 4598497 YP_922936.1 CDS Noca_1736 NC_008699.1 1841548 1841724 R KEGG: tfu:Tfu_0565 hypothetical protein; hypothetical protein complement(1841548..1841724) Nocardioides sp. JS614 4598498 YP_922937.1 CDS kgd NC_008699.1 1841727 1845518 R kgd; produces succinic semialdehyde; part of alternative pathway from alpha-ketoglutarate to succinate; essential for normal growth; alpha-ketoglutarate decarboxylase complement(1841727..1845518) Nocardioides sp. JS614 4598499 YP_922938.1 CDS Noca_1738 NC_008699.1 1845732 1846322 D hypothetical protein 1845732..1846322 Nocardioides sp. JS614 4598500 YP_922939.1 CDS Noca_1739 NC_008699.1 1846322 1847230 D TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: mta:Moth_2366 cell envelope-related transcriptional attenuator; cell envelope-related transcriptional attenuator 1846322..1847230 Nocardioides sp. JS614 4598501 YP_922940.1 CDS Noca_1740 NC_008699.1 1847292 1848740 R hypothetical protein complement(1847292..1848740) Nocardioides sp. JS614 4598502 YP_922941.1 CDS Noca_1741 NC_008699.1 1849136 1850380 R SMART: HNH nuclease; KEGG: fal:FRAAL3997 hypothetical protein; HNH nuclease complement(1849136..1850380) Nocardioides sp. JS614 4598503 YP_922942.1 CDS argS NC_008699.1 1851047 1852615 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 1851047..1852615 Nocardioides sp. JS614 4598505 YP_922943.1 CDS Noca_1743 NC_008699.1 1852621 1854021 D TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: pac:PPA1259 diaminopimelate decarboxylase; diaminopimelate decarboxylase 1852621..1854021 Nocardioides sp. JS614 4598506 YP_922944.1 CDS Noca_1744 NC_008699.1 1854021 1855346 D catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 1854021..1855346 Nocardioides sp. JS614 4598507 YP_922945.1 CDS Noca_1745 NC_008699.1 1855343 1856440 D TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: sco:SCO5355 threonine synthase; L-threonine synthase 1855343..1856440 Nocardioides sp. JS614 4597927 YP_922946.1 CDS Noca_1746 NC_008699.1 1856450 1857352 D KEGG: sco:SCO5356 homoserine kinase; TIGRFAM: homoserine kinase; PFAM: GHMP kinase; GHMP kinase, C terminal domain protein; homoserine kinase 1856450..1857352 Nocardioides sp. JS614 4597928 YP_922947.1 CDS Noca_1747 NC_008699.1 1857894 1859630 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 1857894..1859630 Nocardioides sp. JS614 4597929 YP_922948.1 CDS Noca_1748 NC_008699.1 1859727 1860098 D PFAM: response regulator receiver; KEGG: dsy:DSY2891 hypothetical protein; response regulator receiver 1859727..1860098 Nocardioides sp. JS614 4597930 YP_922949.1 CDS Noca_1749 NC_008699.1 1860168 1861976 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: mbu:Mbur_0510 external sensor signal transduction histidine kinase; ATPase domain-containing protein 1860168..1861976 Nocardioides sp. JS614 4597931 YP_922950.1 CDS rpmE NC_008699.1 1862120 1862347 D RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 1862120..1862347 Nocardioides sp. JS614 4597932 YP_922951.1 CDS prfA NC_008699.1 1862443 1863516 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 1862443..1863516 Nocardioides sp. JS614 4597933 YP_922952.1 CDS Noca_1752 NC_008699.1 1863524 1864402 D TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: sco:SCO5361 putative methylase; HemK family modification methylase 1863524..1864402 Nocardioides sp. JS614 4597934 YP_922953.1 CDS Noca_1753 NC_008699.1 1864422 1865081 D TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain; KEGG: sma:SAV2910 hypothetical protein; translation factor SUA5 1864422..1865081 Nocardioides sp. JS614 4597935 YP_922954.1 CDS Noca_1754 NC_008699.1 1865093 1866277 D PFAM: glycosyl transferase, family 4; KEGG: pac:PPA1248 putative undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase; glycosyl transferase family protein 1865093..1866277 Nocardioides sp. JS614 4597936 YP_922955.1 CDS Noca_1755 NC_008699.1 1866472 1866945 D KEGG: fal:FRAAL5940 putative ATP synthase protein I; putative ATP synthase protein I 1866472..1866945 Nocardioides sp. JS614 4597937 YP_922956.1 CDS Noca_1756 NC_008699.1 1866976 1867209 D hypothetical protein 1866976..1867209 Nocardioides sp. JS614 4597938 YP_922957.1 CDS Noca_1757 NC_008699.1 1867220 1868050 D TIGRFAM: ATP synthase F0, A subunit; PFAM: H+-transporting two-sector ATPase, A subunit; KEGG: pac:PPA1245 ATP synthase A chain; ATP synthase F0 subunit A 1867220..1868050 Nocardioides sp. JS614 4597939 YP_922958.1 CDS Noca_1758 NC_008699.1 1868131 1868340 D PFAM: H+-transporting two-sector ATPase, C subunit; KEGG: pac:PPA1244 ATP synthase C chain; H+-transporting two-sector ATPase subunit C 1868131..1868340 Nocardioides sp. JS614 4597940 YP_922959.1 CDS Noca_1759 NC_008699.1 1868380 1868949 D TIGRFAM: ATP synthase F0, B subunit; PFAM: H+-transporting two-sector ATPase, B/B' subunit; KEGG: rha:RHA1_ro01476 H(+)-transporting two-sector ATPase subunit B; ATP synthase F0 subunit B 1868380..1868949 Nocardioides sp. JS614 4597941 YP_922960.1 CDS Noca_1760 NC_008699.1 1868949 1869776 D TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+-transporting two-sector ATPase, delta (OSCP) subunit; KEGG: sco:SCO5370 ATP synthase delta chain; ATP synthase F1 subunit delta 1868949..1869776 Nocardioides sp. JS614 4597942 YP_922961.1 CDS Noca_1761 NC_008699.1 1869831 1871474 D produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 1869831..1871474 Nocardioides sp. JS614 4597943 YP_922962.1 CDS Noca_1762 NC_008699.1 1871477 1872388 D KEGG: lxx:Lxx07040 ATP synthase, gamma chain; TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+-transporting two-sector ATPase, gamma subunit; ATP synthase F1 subunit gamma 1871477..1872388 Nocardioides sp. JS614 4597944 YP_922963.1 CDS Noca_1763 NC_008699.1 1872393 1873847 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 1872393..1873847 Nocardioides sp. JS614 4597945 YP_922964.1 CDS atpC NC_008699.1 1873849 1874250 D produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit epsilon 1873849..1874250 Nocardioides sp. JS614 4597676 YP_922965.1 CDS Noca_1765 NC_008699.1 1874331 1874780 D KEGG: sma:SAV2879 hypothetical protein; hypothetical protein 1874331..1874780 Nocardioides sp. JS614 4597677 YP_922966.1 CDS Noca_1766 NC_008699.1 1874858 1876156 R PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: mtc:MT3905 IS1557, transposase; transposase, IS204/IS1001/IS1096/IS1165 family protein complement(1874858..1876156) Nocardioides sp. JS614 4597678 YP_922967.1 CDS Noca_1767 NC_008699.1 1876368 1877822 R PFAM: FAD linked oxidase domain protein; KEGG: nfa:nfa45960 putative oxidoreductase; FAD linked oxidase domain-containing protein complement(1876368..1877822) Nocardioides sp. JS614 4597679 YP_922968.1 CDS Noca_1768 NC_008699.1 1878028 1878639 D KEGG: nfa:nfa33290 putative transcriptional regulator; putative transcriptional regulator 1878028..1878639 Nocardioides sp. JS614 4597680 YP_922969.1 CDS Noca_1769 NC_008699.1 1878750 1879916 D PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro04560 probable transporter, MFS superfamily; major facilitator transporter 1878750..1879916 Nocardioides sp. JS614 4597681 YP_922970.1 CDS Noca_1770 NC_008699.1 1879955 1880530 R TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: sco:SCO5381 hypothetical protein; ATP:cob(I)alamin adenosyltransferase complement(1879955..1880530) Nocardioides sp. JS614 4597682 YP_922971.1 CDS Noca_1771 NC_008699.1 1880765 1881073 D PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: sco:SCO5386 anti-sigma factor antagonist; sulfate transporter/antisigma-factor antagonist STAS 1880765..1881073 Nocardioides sp. JS614 4597683 YP_922972.1 CDS Noca_1772 NC_008699.1 1881141 1883183 D KEGG: sma:SAV1912 putative methylmalonyl-CoA mutase, coenzyme B12-dependent alpha subunit; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein; methylmalonyl-CoA mutase 1881141..1883183 Nocardioides sp. JS614 4597684 YP_922973.1 CDS Noca_1773 NC_008699.1 1883215 1883397 D hypothetical protein 1883215..1883397 Nocardioides sp. JS614 4597685 YP_922974.1 CDS Noca_1774 NC_008699.1 1883445 1883969 D PFAM: Ferritin, Dps family protein; KEGG: rha:RHA1_ro04028 probable ferritin; Ferritin, Dps family protein 1883445..1883969 Nocardioides sp. JS614 4597686 YP_922975.1 CDS Noca_1775 NC_008699.1 1884093 1885151 D hypothetical protein 1884093..1885151 Nocardioides sp. JS614 4597687 YP_922976.1 CDS Noca_1776 NC_008699.1 1885148 1886959 D KEGG: sco:SCO4438 integral membrane protein; integral membrane protein 1885148..1886959 Nocardioides sp. JS614 4597688 YP_922977.1 CDS Noca_1777 NC_008699.1 1886982 1887560 R hypothetical protein complement(1886982..1887560) Nocardioides sp. JS614 4597689 YP_922978.1 CDS Noca_1778 NC_008699.1 1887550 1889430 R KEGG: lbl:LBL_1155 plastocyanin; hypothetical protein complement(1887550..1889430) Nocardioides sp. JS614 4597690 YP_922979.1 CDS Noca_1779 NC_008699.1 1889512 1890579 R KEGG: bja:bll2443 hypothetical protein; hypothetical protein complement(1889512..1890579) Nocardioides sp. JS614 4597691 YP_922980.1 CDS Noca_1780 NC_008699.1 1890652 1891584 D PFAM: FAD dependent oxidoreductase; KEGG: rxy:Rxyl_0526 D-amino acid oxidase; D-amino-acid oxidase 1890652..1891584 Nocardioides sp. JS614 4597692 YP_922981.1 CDS Noca_1782 NC_008699.1 1892572 1893252 R PFAM: protein of unknown function DUF91; KEGG: nfa:nfa10710 hypothetical protein; hypothetical protein complement(1892572..1893252) Nocardioides sp. JS614 4597694 YP_922982.1 CDS Noca_1783 NC_008699.1 1893313 1894860 R PFAM: chemotaxis sensory transducer; KEGG: ter:Tery_4229 methyl-accepting chemotaxis sensory transducer; chemotaxis sensory transducer complement(1893313..1894860) Nocardioides sp. JS614 4597695 YP_922983.1 CDS Noca_1784 NC_008699.1 1895023 1896849 D PFAM: UDP-glucose/GDP-mannose dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: sco:SCO6475 oxidoreductase; 3-hydroxyacyl-CoA dehydrogenase 1895023..1896849 Nocardioides sp. JS614 4597696 YP_922984.1 CDS Noca_1785 NC_008699.1 1896989 1898470 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: sma:SAV5186 sugar transport protein; major facilitator transporter 1896989..1898470 Nocardioides sp. JS614 4597697 YP_922985.1 CDS Noca_1786 NC_008699.1 1898528 1898767 D hypothetical protein 1898528..1898767 Nocardioides sp. JS614 4597698 YP_922986.1 CDS Noca_1787 NC_008699.1 1898815 1899582 D KEGG: tfu:Tfu_2558 hypothetical protein; hypothetical protein 1898815..1899582 Nocardioides sp. JS614 4597699 YP_922987.1 CDS Noca_1788 NC_008699.1 1899776 1901683 R PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: rxy:Rxyl_2930 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin complement(1899776..1901683) Nocardioides sp. JS614 4597700 YP_922988.1 CDS Noca_1789 NC_008699.1 1901785 1902531 D KEGG: sco:SCO0537 secreted protein; secreted protein 1901785..1902531 Nocardioides sp. JS614 4597701 YP_922989.1 CDS Noca_1790 NC_008699.1 1902522 1903328 D PFAM: alpha/beta hydrolase fold; KEGG: pac:PPA1101 putative esterase/lipase YbfF; alpha/beta hydrolase fold protein 1902522..1903328 Nocardioides sp. JS614 4597702 YP_922990.1 CDS Noca_1791 NC_008699.1 1903376 1903918 R PFAM: protein of unknown function DUF1470; KEGG: mmc:Mmcs_1119 protein of unknown function DUF1470; hypothetical protein complement(1903376..1903918) Nocardioides sp. JS614 4597703 YP_922991.1 CDS Noca_1792 NC_008699.1 1903997 1904941 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: mmc:Mmcs_1118 protein of unknown function DUF6, transmembrane; hypothetical protein 1903997..1904941 Nocardioides sp. JS614 4597704 YP_922992.1 CDS Noca_1793 NC_008699.1 1905078 1906241 R PFAM: protein of unknown function UPF0118; KEGG: rha:RHA1_ro00086 hypothetical protein; hypothetical protein complement(1905078..1906241) Nocardioides sp. JS614 4597705 YP_922993.1 CDS Noca_1794 NC_008699.1 1906238 1907578 R KEGG: tfu:Tfu_2396 putative cellulose-binding protein; hypothetical protein complement(1906238..1907578) Nocardioides sp. JS614 4597706 YP_922994.1 CDS Noca_1795 NC_008699.1 1907738 1909090 R TIGRFAM: crotonyl-CoA reductase; PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sma:SAV1911 crotonyl-CoA reductase; crotonyl-CoA reductase complement(1907738..1909090) Nocardioides sp. JS614 4597707 YP_922995.1 CDS Noca_1796 NC_008699.1 1909229 1909741 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rha:RHA1_ro01456 possible methylmalonyl-CoA epimerase; methylmalonyl-CoA epimerase complement(1909229..1909741) Nocardioides sp. JS614 4597708 YP_922996.1 CDS Noca_1797 NC_008699.1 1909823 1911013 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis; acetyl-CoA acetyltransferase 1909823..1911013 Nocardioides sp. JS614 4597709 YP_922997.1 CDS Noca_1798 NC_008699.1 1910997 1911968 D TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; KEGG: sma:SAV2855 lysine arginine ornithine transport system kinase; LAO/AO transport system ATPase 1910997..1911968 Nocardioides sp. JS614 4597710 YP_922998.1 CDS Noca_1799 NC_008699.1 1912030 1912275 D hypothetical protein 1912030..1912275 Nocardioides sp. JS614 4597711 YP_922999.1 CDS Noca_1800 NC_008699.1 1912281 1912793 D KEGG: fal:FRAAL2022 hypothetical protein; hypothetical protein 1912281..1912793 Nocardioides sp. JS614 4597712 YP_923000.1 CDS Noca_1801 NC_008699.1 1912864 1913352 D PFAM: regulatory protein, MarR; KEGG: tfu:Tfu_2393 regulatory protein, MarR; regulatory protein MarR 1912864..1913352 Nocardioides sp. JS614 4597638 YP_923001.1 CDS Noca_1802 NC_008699.1 1913529 1915217 D KEGG: sma:SAV2832 putative isobutyryl-CoA mutase, chain A; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; methylmalonyl-CoA mutase 1913529..1915217 Nocardioides sp. JS614 4597639 YP_923002.1 CDS Noca_1803 NC_008699.1 1915308 1916516 D PFAM: acetyl-CoA hydrolase/transferase; KEGG: fra:Francci3_1561 4-hydroxybutyrate coenzyme A transferase; acetyl-CoA hydrolase/transferase 1915308..1916516 Nocardioides sp. JS614 4597640 YP_923003.1 CDS Noca_1804 NC_008699.1 1916585 1917529 D PFAM: Thioredoxin domain; KEGG: sma:SAV2830 putative thioredoxin; thioredoxin domain-containing protein 1916585..1917529 Nocardioides sp. JS614 4597641 YP_923004.1 CDS Noca_1805 NC_008699.1 1917728 1918489 R PFAM: NUDIX hydrolase; KEGG: pac:PPA1110 putative pyrophosphohydrolase; NUDIX hydrolase complement(1917728..1918489) Nocardioides sp. JS614 4597642 YP_923005.1 CDS Noca_1806 NC_008699.1 1918499 1920748 R catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein complement(1918499..1920748) Nocardioides sp. JS614 4597643 YP_923006.1 CDS Noca_1807 NC_008699.1 1920745 1922211 R KEGG: rha:RHA1_ro06042 hypothetical protein; hypothetical protein complement(1920745..1922211) Nocardioides sp. JS614 4597644 YP_923007.1 CDS Noca_1808 NC_008699.1 1922208 1923923 R KEGG: sma:SAV2803 trehalose synthase; TIGRFAM: trehalose synthase; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; trehalose synthase complement(1922208..1923923) Nocardioides sp. JS614 4597645 YP_923008.1 CDS Noca_1809 NC_008699.1 1923920 1925932 R PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: fra:Francci3_3678 alpha amylase, catalytic region; alpha amylase complement(1923920..1925932) Nocardioides sp. JS614 4597646 YP_923009.1 CDS Noca_1810 NC_008699.1 1926139 1929579 R PFAM: peptidase M36, fungalysin; KEGG: rxy:Rxyl_2538 coagulation factor 5/8 type-like protein; peptidase M36, fungalysin complement(1926139..1929579) Nocardioides sp. JS614 4597647 YP_923010.1 CDS Noca_1811 NC_008699.1 1929708 1932296 D KEGG: sma:SAV2800 putative glycogen phosphorylase; TIGRFAM: alpha-glucan phosphorylases; PFAM: glycosyl transferase, family 35; alpha-glucan phosphorylase 1929708..1932296 Nocardioides sp. JS614 4597648 YP_923011.1 CDS Noca_1812 NC_008699.1 1932461 1934617 R KEGG: sma:SAV2789 putative glycosyl hydrolase; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; glycogen debranching protein GlgX complement(1932461..1934617) Nocardioides sp. JS614 4597649 YP_923012.1 CDS Noca_1813 NC_008699.1 1934626 1935492 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: sma:SAV2786 enoyl-CoA hydratase; short chain enoyl-CoA hydratase 1934626..1935492 Nocardioides sp. JS614 4597650 YP_923013.1 CDS Noca_1814 NC_008699.1 1935500 1935832 D hypothetical protein 1935500..1935832 Nocardioides sp. JS614 4597651 YP_923014.1 CDS Noca_1815 NC_008699.1 1935981 1936781 D PFAM: electron transfer flavoprotein beta-subunit; KEGG: sco:SCO1082 putative electron transfer flavoprotein, beta subunit; electron transfer flavoprotein subunit beta 1935981..1936781 Nocardioides sp. JS614 4597652 YP_923015.1 CDS Noca_1816 NC_008699.1 1936809 1937762 D PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: sco:SCO1081 putative electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha 1936809..1937762 Nocardioides sp. JS614 4597653 YP_923016.1 CDS Noca_1817 NC_008699.1 1937859 1939352 R KEGG: sma:SAV4459 hypothetical protein; hypothetical protein complement(1937859..1939352) Nocardioides sp. JS614 4597654 YP_923017.1 CDS proA NC_008699.1 1939486 1940775 D Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 1939486..1940775 Nocardioides sp. JS614 4597655 YP_923018.1 CDS Noca_1819 NC_008699.1 1940812 1940964 D hypothetical protein 1940812..1940964 Nocardioides sp. JS614 4597656 YP_923019.1 CDS Noca_1820 NC_008699.1 1941003 1941620 D KEGG: cef:CE2257 putative nicotinate mononucleotide adenylyltransferase; TIGRFAM: cytidyltransferase-related domain; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; nicotinate-nucleotide adenylyltransferase 1941003..1941620 Nocardioides sp. JS614 4597657 YP_923020.1 CDS Noca_1821 NC_008699.1 1941617 1942000 D TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: sma:SAV5480 hypothetical protein; iojap family protein 1941617..1942000 Nocardioides sp. JS614 4597658 YP_923021.1 CDS Noca_1822 NC_008699.1 1941997 1942629 D PFAM: Phosphoglycerate mutase; KEGG: tfu:Tfu_2169 putative phosphoglycerate mutase; phosphoglycerate mutase 1941997..1942629 Nocardioides sp. JS614 4597659 YP_923022.1 CDS Noca_1823 NC_008699.1 1942853 1943476 D KEGG: fal:FRAAL1760 integrase; hypothetical protein 1942853..1943476 Nocardioides sp. JS614 4597661 YP_923023.1 CDS Noca_1824 NC_008699.1 1943537 1944712 R PFAM: type IV pilus assembly PilZ; type IV pilus assembly PilZ complement(1943537..1944712) Nocardioides sp. JS614 4597662 YP_923024.1 CDS Noca_1825 NC_008699.1 1945445 1946479 R PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: mmc:Mmcs_1694 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(1945445..1946479) Nocardioides sp. JS614 4597663 YP_923025.1 CDS Noca_1826 NC_008699.1 1947061 1947762 R PFAM: plasmid pRiA4b ORF-3 family protein; KEGG: cef:CE1215 hypothetical protein; plasmid pRiA4b ORF-3 family protein complement(1947061..1947762) Nocardioides sp. JS614 4597664 YP_923026.1 CDS Noca_1827 NC_008699.1 1948073 1948663 R PFAM: regulatory protein, TetR; KEGG: nfa:nfa34140 putative transcriptional regulator; regulatory protein TetR complement(1948073..1948663) Nocardioides sp. JS614 4597665 YP_923027.1 CDS Noca_1828 NC_008699.1 1948796 1950016 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 1948796..1950016 Nocardioides sp. JS614 4597666 YP_923028.1 CDS Noca_1829 NC_008699.1 1950013 1950810 D PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sco:SCO1692 oxidoreductase; short-chain dehydrogenase/reductase SDR 1950013..1950810 Nocardioides sp. JS614 4597667 YP_923029.1 CDS Noca_1831 NC_008699.1 1951957 1953312 D PFAM: aminoglycoside phosphotransferase; KEGG: nfa:nfa34090 putative phosphotransferase; aminoglycoside phosphotransferase 1951957..1953312 Nocardioides sp. JS614 4597669 YP_923030.1 CDS Noca_1832 NC_008699.1 1953312 1954547 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: nfa:nfa34080 putative acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 1953312..1954547 Nocardioides sp. JS614 4597670 YP_923031.1 CDS Noca_1833 NC_008699.1 1954640 1955350 D PFAM: regulatory protein, TetR; KEGG: sma:SAV6602 TetR-family transcriptional regulator; regulatory protein TetR 1954640..1955350 Nocardioides sp. JS614 4597671 YP_923032.1 CDS Noca_1834 NC_008699.1 1955309 1956082 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro01497 3-oxoacyl-[acyl-carrier-protein] reductase; short-chain dehydrogenase/reductase SDR complement(1955309..1956082) Nocardioides sp. JS614 4597672 YP_923033.1 CDS Noca_1835 NC_008699.1 1956101 1959640 R Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; indolepyruvate ferredoxin oxidoreductase complement(1956101..1959640) Nocardioides sp. JS614 4597673 YP_923034.1 CDS Noca_1836 NC_008699.1 1959797 1960951 D KEGG: rha:RHA1_ro03580 hypothetical protein; CdaR family transcriptional regulator 1959797..1960951 Nocardioides sp. JS614 4597674 YP_923035.1 CDS Noca_1837 NC_008699.1 1961071 1962216 D PFAM: FAD dependent oxidoreductase; KEGG: pfo:Pfl_0969 FAD dependent oxidoreductase; FAD dependent oxidoreductase 1961071..1962216 Nocardioides sp. JS614 4597675 YP_923036.1 CDS Noca_1838 NC_008699.1 1962226 1963098 D PFAM: inner-membrane translocator; KEGG: dar:Daro_0271 inner-membrane translocator; inner-membrane translocator 1962226..1963098 Nocardioides sp. JS614 4597158 YP_923037.1 CDS Noca_1839 NC_008699.1 1963098 1964150 D PFAM: inner-membrane translocator; KEGG: dvu:DVU0549 high-affinity branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator 1963098..1964150 Nocardioides sp. JS614 4597159 YP_923038.1 CDS Noca_1840 NC_008699.1 1964147 1964935 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: wsu:WS1467 ABC transport system ATP-binding protein; ABC transporter-like protein 1964147..1964935 Nocardioides sp. JS614 4597160 YP_923039.1 CDS Noca_1841 NC_008699.1 1964928 1965719 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO2012 putative branched chain amino acid transport ATP-binding protein; ABC transporter-like protein 1964928..1965719 Nocardioides sp. JS614 4597161 YP_923040.1 CDS Noca_1842 NC_008699.1 1965841 1967025 D PFAM: Extracellular ligand-binding receptor; KEGG: gsu:GSU3401 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative; extracellular ligand-binding receptor 1965841..1967025 Nocardioides sp. JS614 4597162 YP_923041.1 CDS Noca_1843 NC_008699.1 1967130 1968479 D PFAM: MmgE/PrpD family protein; KEGG: sil:SPO0205 MmgE/PrpD family protein; MmgE/PrpD family protein 1967130..1968479 Nocardioides sp. JS614 4597163 YP_923042.1 CDS Noca_1844 NC_008699.1 1968476 1970491 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rha:RHA1_ro06076 2,4-dienoyl-CoA reductase; NADH:flavin oxidoreductase 1968476..1970491 Nocardioides sp. JS614 4597164 YP_923043.1 CDS Noca_1845 NC_008699.1 1970515 1970862 D PFAM: Endoribonuclease L-PSP; KEGG: pfu:PF0668 hypothetical protein; endoribonuclease L-PSP 1970515..1970862 Nocardioides sp. JS614 4597165 YP_923044.1 CDS Noca_1846 NC_008699.1 1970859 1971584 D PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: dsy:DSY2660 hypothetical protein; short-chain dehydrogenase/reductase SDR 1970859..1971584 Nocardioides sp. JS614 4597166 YP_923045.1 CDS Noca_1847 NC_008699.1 1971581 1972309 D PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: dsy:DSY2660 hypothetical protein; short-chain dehydrogenase/reductase SDR 1971581..1972309 Nocardioides sp. JS614 4597167 YP_923046.1 CDS Noca_1848 NC_008699.1 1972353 1973489 D PFAM: FAD dependent oxidoreductase; KEGG: rha:RHA1_ro00338 probable sarcosine oxidase beta subunit; FAD dependent oxidoreductase 1972353..1973489 Nocardioides sp. JS614 4597168 YP_923047.1 CDS Noca_1849 NC_008699.1 1973486 1974187 D PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bam:Bamb_4144 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1973486..1974187 Nocardioides sp. JS614 4597169 YP_923048.1 CDS Noca_1850 NC_008699.1 1974216 1974569 D PFAM: protein of unknown function DUF861, cupin_3; KEGG: fnu:FN0090 ethanolamine utilization protein EutQ; hypothetical protein 1974216..1974569 Nocardioides sp. JS614 4597170 YP_923049.1 CDS Noca_1851 NC_008699.1 1974566 1976164 D PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bxe:Bxe_C0508 putative dehydrogenase flavoprotein; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 1974566..1976164 Nocardioides sp. JS614 4597171 YP_923050.1 CDS Noca_1852 NC_008699.1 1976161 1976997 D PFAM: NmrA family protein; KEGG: nfa:nfa29880 hypothetical protein; NmrA family protein 1976161..1976997 Nocardioides sp. JS614 4597172 YP_923051.1 CDS Noca_1853 NC_008699.1 1976994 1978820 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rfr:Rfer_2384 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 1976994..1978820 Nocardioides sp. JS614 4597173 YP_923052.1 CDS Noca_1854 NC_008699.1 1978853 1979740 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: mmc:Mmcs_1118 protein of unknown function DUF6, transmembrane; hypothetical protein 1978853..1979740 Nocardioides sp. JS614 4597174 YP_923053.1 CDS Noca_1855 NC_008699.1 1979832 1980815 D PFAM: 2-nitropropane dioxygenase, NPD; KEGG: rha:RHA1_ro02687 possible 2-nitropropane dioxygenase; 2-nitropropane dioxygenase 1979832..1980815 Nocardioides sp. JS614 4597175 YP_923054.1 CDS Noca_1856 NC_008699.1 1980883 1981749 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 1980883..1981749 Nocardioides sp. JS614 4597176 YP_923055.1 CDS Noca_1857 NC_008699.1 1981981 1982718 D PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro02735 probable 3-oxoacyl-[acyl-carrier-protein] reductase; short-chain dehydrogenase/reductase SDR 1981981..1982718 Nocardioides sp. JS614 4597177 YP_923056.1 CDS Noca_1858 NC_008699.1 1982715 1983629 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: bcn:Bcen_4953 protein of unknown function DUF6, transmembrane; hypothetical protein 1982715..1983629 Nocardioides sp. JS614 4597178 YP_923057.1 CDS Noca_1860 NC_008699.1 1985025 1985369 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: fal:FRAAL4180 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 1985025..1985369 Nocardioides sp. JS614 4597180 YP_923058.1 CDS Noca_1861 NC_008699.1 1985386 1985907 R hypothetical protein complement(1985386..1985907) Nocardioides sp. JS614 4597181 YP_923059.1 CDS Noca_1862 NC_008699.1 1986022 1987971 R KEGG: sma:SAV4769 amino acid transporter; amino acid transporter complement(1986022..1987971) Nocardioides sp. JS614 4597182 YP_923060.1 CDS Noca_1863 NC_008699.1 1988090 1988458 D hypothetical protein 1988090..1988458 Nocardioides sp. JS614 4597183 YP_923061.1 CDS Noca_1864 NC_008699.1 1988488 1989603 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: fal:FRAAL5304 sensory histidine kinase in two-component regulatory system wtih KdpE, regulation of potassium translocation; ATPase domain-containing protein 1988488..1989603 Nocardioides sp. JS614 4597184 YP_923062.1 CDS Noca_1865 NC_008699.1 1989600 1990274 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sco:SCO5872 putative turgor pressure regulator; response regulator receiver 1989600..1990274 Nocardioides sp. JS614 4597185 YP_923063.1 CDS Noca_1866 NC_008699.1 1990292 1991209 R KEGG: rha:RHA1_ro04434 hypothetical protein; hypothetical protein complement(1990292..1991209) Nocardioides sp. JS614 4597186 YP_923064.1 CDS Noca_1867 NC_008699.1 1991291 1993141 R PFAM: DSBA oxidoreductase; Na+/H+ antiporter NhaA; KEGG: rha:RHA1_ro01708 Na+/H+ antiporter, NhaA family; Na+/H+ antiporter NhaA complement(1991291..1993141) Nocardioides sp. JS614 4597187 YP_923065.1 CDS Noca_1868 NC_008699.1 1993155 1993493 R KEGG: nfa:nfa55090 hypothetical protein; hypothetical protein complement(1993155..1993493) Nocardioides sp. JS614 4597188 YP_923066.1 CDS Noca_1869 NC_008699.1 1993589 1994158 R PFAM: YceI family protein; KEGG: fal:FRAAL1996 hypothetical protein; hypothetical protein complement(1993589..1994158) Nocardioides sp. JS614 4597189 YP_923067.1 CDS Noca_1870 NC_008699.1 1994263 1994739 D PFAM: regulatory protein, MarR; KEGG: fal:FRAAL1706 putative MarR-family transcriptional regulator; regulatory protein MarR 1994263..1994739 Nocardioides sp. JS614 4597190 YP_923068.1 CDS Noca_1871 NC_008699.1 1994792 1995931 D PFAM: cytochrome P450; KEGG: eba:ebA6767 hypothetical heme-thiolate monooxygenase; cytochrome P450 1994792..1995931 Nocardioides sp. JS614 4597191 YP_923069.1 CDS Noca_1872 NC_008699.1 1995955 1996215 R KEGG: nfa:nfa24740 hypothetical protein; hypothetical protein complement(1995955..1996215) Nocardioides sp. JS614 4597192 YP_923070.1 CDS Noca_1873 NC_008699.1 1996326 1997873 D KEGG: ecj:JW4343 conserved hypothetical protein; hypothetical protein 1996326..1997873 Nocardioides sp. JS614 4597193 YP_923071.1 CDS Noca_1874 NC_008699.1 1997845 1998570 D PFAM: Radical SAM domain protein; KEGG: ecp:ECP_4763 hypothetical protein YjjW; radical SAM domain-containing protein 1997845..1998570 Nocardioides sp. JS614 4597194 YP_923072.1 CDS Noca_1875 NC_008699.1 1998593 1999285 R hypothetical protein complement(1998593..1999285) Nocardioides sp. JS614 4597195 YP_923073.1 CDS Noca_1876 NC_008699.1 1999282 2000511 R KEGG: sus:Acid_6922 natural resistance-associated macrophage protein; natural resistance-associated macrophage protein complement(1999282..2000511) Nocardioides sp. JS614 4597196 YP_923074.1 CDS Noca_1877 NC_008699.1 2000508 2000960 R hypothetical protein complement(2000508..2000960) Nocardioides sp. JS614 4597197 YP_923075.1 CDS Noca_1878 NC_008699.1 2000990 2001916 R PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: eli:ELI_09720 esterase; alpha/beta hydrolase domain-containing protein complement(2000990..2001916) Nocardioides sp. JS614 4596379 YP_923076.1 CDS Noca_1879 NC_008699.1 2001990 2002355 D KEGG: rha:RHA1_ro02551 hypothetical protein; hypothetical protein 2001990..2002355 Nocardioides sp. JS614 4596380 YP_923077.1 CDS Noca_1880 NC_008699.1 2002630 2003322 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: fal:FRAAL1709 putative phosphoglycolate phosphatase; HAD family hydrolase 2002630..2003322 Nocardioides sp. JS614 4596381 YP_923078.1 CDS Noca_1881 NC_008699.1 2003395 2003709 R hypothetical protein complement(2003395..2003709) Nocardioides sp. JS614 4596382 YP_923079.1 CDS Noca_1882 NC_008699.1 2003855 2005318 R PFAM: FAD dependent oxidoreductase; KEGG: nfa:nfa43490 putative monooxygenase; FAD dependent oxidoreductase complement(2003855..2005318) Nocardioides sp. JS614 4596383 YP_923080.1 CDS Noca_1883 NC_008699.1 2005416 2007524 D PFAM: protein of unknown function DUF839; KEGG: sco:SCO3790 hypothetical protein; hypothetical protein 2005416..2007524 Nocardioides sp. JS614 4596384 YP_923081.1 CDS leuS NC_008699.1 2007767 2010313 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 2007767..2010313 Nocardioides sp. JS614 4596385 YP_923082.1 CDS Noca_1885 NC_008699.1 2010336 2011190 D TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: sma:SAV5490 hypothetical protein; degV family protein 2010336..2011190 Nocardioides sp. JS614 4596386 YP_923083.1 CDS Noca_1886 NC_008699.1 2011314 2012216 D TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; SMART: Helix-hairpin-helix DNA-binding, class 1; KEGG: nfa:nfa13820 putative DNA-binding protein; helix-hairpin-helix repeat-containing competence protein ComEA 2011314..2012216 Nocardioides sp. JS614 4596387 YP_923084.1 CDS Noca_1887 NC_008699.1 2012221 2014539 D TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: sco:SCO2567 integral membrane protein; DNA internalization-related competence protein ComEC/Rec2 2012221..2014539 Nocardioides sp. JS614 4596388 YP_923085.1 CDS Noca_1888 NC_008699.1 2014552 2015544 D TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; KEGG: sco:SCO2564 putative DNA polymerase III, delta subunit; DNA polymerase III subunit delta 2014552..2015544 Nocardioides sp. JS614 4596389 YP_923086.1 CDS rpsT NC_008699.1 2015820 2016080 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(2015820..2016080) Nocardioides sp. JS614 4596390 YP_923087.1 CDS Noca_1890 NC_008699.1 2016196 2017152 R KEGG: pac:PPA0191 hypothetical protein; hypothetical protein complement(2016196..2017152) Nocardioides sp. JS614 4596391 YP_923088.1 CDS Noca_1891 NC_008699.1 2017233 2019140 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 2017233..2019140 Nocardioides sp. JS614 4596392 YP_923089.1 CDS Noca_1892 NC_008699.1 2019140 2020051 D PFAM: aminoglycoside/hydroxyurea antibiotic resistance kinase; KEGG: sma:SAV3961 hydroxyurea phosphotransferase; aminoglycoside/hydroxyurea antibiotic resistance kinase 2019140..2020051 Nocardioides sp. JS614 4596393 YP_923090.1 CDS Noca_1893 NC_008699.1 2020069 2020725 D PFAM: MOSC domain containing protein; KEGG: sma:SAV4995 hypothetical protein; MOSC domain-containing protein 2020069..2020725 Nocardioides sp. JS614 4596394 YP_923091.1 CDS Noca_1894 NC_008699.1 2020810 2022651 D PFAM: AMP-dependent synthetase and ligase; KEGG: mmc:Mmcs_3602 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 2020810..2022651 Nocardioides sp. JS614 4596395 YP_923092.1 CDS Noca_1895 NC_008699.1 2022738 2023424 D KEGG: fal:FRAAL2178 hypothetical protein; hypothetical protein 2022738..2023424 Nocardioides sp. JS614 4596396 YP_923093.1 CDS Noca_1896 NC_008699.1 2023424 2024986 D KEGG: rha:RHA1_ro06213 possible DNA-directed DNA polymerase; putative DNA-directed DNA polymerase 2023424..2024986 Nocardioides sp. JS614 4596397 YP_923094.1 CDS dnaE2 NC_008699.1 2025002 2028439 D DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase.; error-prone DNA polymerase 2025002..2028439 Nocardioides sp. JS614 4596398 YP_923095.1 CDS Noca_1898 NC_008699.1 2028451 2029731 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 2028451..2029731 Nocardioides sp. JS614 4596399 YP_923096.1 CDS Noca_1899 NC_008699.1 2029759 2030226 D PFAM: TM2 domain containing protein+B7201; KEGG: rha:RHA1_ro01010 hypothetical protein; TM2 domain-containing protein 2029759..2030226 Nocardioides sp. JS614 4596400 YP_923097.1 CDS Noca_1900 NC_008699.1 2030262 2031125 R KEGG: mmc:Mmcs_2324 hypothetical protein; hypothetical protein complement(2030262..2031125) Nocardioides sp. JS614 4596401 YP_923098.1 CDS Noca_1901 NC_008699.1 2031166 2031411 R hypothetical protein complement(2031166..2031411) Nocardioides sp. JS614 4596402 YP_923099.1 CDS Noca_1902 NC_008699.1 2031430 2032293 R PFAM: beta-lactamase domain protein; KEGG: mbo:Mb1948 hypothetical protein; beta-lactamase domain-containing protein complement(2031430..2032293) Nocardioides sp. JS614 4596403 YP_923100.1 CDS hrcA NC_008699.1 2032442 2033455 D Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 2032442..2033455 Nocardioides sp. JS614 4596404 YP_923101.1 CDS Noca_1904 NC_008699.1 2033518 2034693 D TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ central domain protein; heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: sma:SAV5570 putative DnaJ protein; chaperone protein DnaJ 2033518..2034693 Nocardioides sp. JS614 4596405 YP_923102.1 CDS Noca_1905 NC_008699.1 2034702 2035442 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 2034702..2035442 Nocardioides sp. JS614 4596406 YP_923103.1 CDS Noca_1906 NC_008699.1 2035511 2036395 R KEGG: rxy:Rxyl_2197 hypothetical protein; hypothetical protein complement(2035511..2036395) Nocardioides sp. JS614 4596407 YP_923104.1 CDS Noca_1907 NC_008699.1 2036423 2037364 R hypothetical protein complement(2036423..2037364) Nocardioides sp. JS614 4596408 YP_923105.1 CDS Noca_1908 NC_008699.1 2037361 2037861 R PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: tfu:Tfu_0842 putative RNA polymerase ECF-subfamily sigma factor; sigma-70 factor complement(2037361..2037861) Nocardioides sp. JS614 4596409 YP_923106.1 CDS Noca_1909 NC_008699.1 2037929 2038267 D PFAM: histidine triad (HIT) protein; KEGG: sma:SAV5575 protein kinase C inhibitor (HIT family); histidine triad (HIT) protein 2037929..2038267 Nocardioides sp. JS614 4596410 YP_923107.1 CDS Noca_1910 NC_008699.1 2038264 2039505 D KEGG: sus:Acid_2373 calcium-binding EF-hand-containing protein; hypothetical protein 2038264..2039505 Nocardioides sp. JS614 4596411 YP_923108.1 CDS Noca_1911 NC_008699.1 2039493 2039798 R hypothetical protein complement(2039493..2039798) Nocardioides sp. JS614 4596412 YP_923109.1 CDS Noca_1912 NC_008699.1 2039900 2040937 D PFAM: PhoH family protein; KEGG: tfu:Tfu_0844 phosphate starvation-inducible protein PhoH predicted ATPase; PhoH family protein 2039900..2040937 Nocardioides sp. JS614 4596413 YP_923110.1 CDS Noca_1913 NC_008699.1 2040954 2041403 D PFAM: protein of unknown function UPF0054; KEGG: tfu:Tfu_0845 protein of unknown function UPF0054; putative metalloprotease 2040954..2041403 Nocardioides sp. JS614 4596360 YP_923111.1 CDS Noca_1914 NC_008699.1 2041435 2042727 D PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: pac:PPA0938 conserved protein, putative hemolysin; CBS domain-containing protein 2041435..2042727 Nocardioides sp. JS614 4596361 YP_923112.1 CDS Noca_1915 NC_008699.1 2042720 2043070 D KEGG: sma:SAV5589 hypothetical protein; hypothetical protein 2042720..2043070 Nocardioides sp. JS614 4596362 YP_923113.1 CDS Noca_1916 NC_008699.1 2043128 2044507 D PFAM: FAD linked oxidase domain protein; KEGG: rha:RHA1_ro04208 hypothetical protein; FAD linked oxidase domain-containing protein 2043128..2044507 Nocardioides sp. JS614 4596363 YP_923114.1 CDS Noca_1917 NC_008699.1 2044504 2045778 D PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rha:RHA1_ro04207 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 2044504..2045778 Nocardioides sp. JS614 4596364 YP_923115.1 CDS Noca_1918 NC_008699.1 2045848 2046621 D PFAM: Siderophore-interacting protein; FAD-binding 9, siderophore-interacting domain protein; KEGG: rha:RHA1_ro06437 hypothetical protein; siderophore-interacting protein 2045848..2046621 Nocardioides sp. JS614 4596365 YP_923116.1 CDS era NC_008699.1 2046618 2047559 D Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 2046618..2047559 Nocardioides sp. JS614 4596366 YP_923117.1 CDS Noca_1920 NC_008699.1 2047559 2047945 D KEGG: sal:Sala_2850 hypothetical protein; hypothetical protein 2047559..2047945 Nocardioides sp. JS614 4596367 YP_923118.1 CDS Noca_1921 NC_008699.1 2047948 2048817 R hypothetical protein complement(2047948..2048817) Nocardioides sp. JS614 4596368 YP_923119.1 CDS Noca_1922 NC_008699.1 2048814 2049614 R hypothetical protein complement(2048814..2049614) Nocardioides sp. JS614 4596369 YP_923120.1 CDS Noca_1923 NC_008699.1 2049787 2051322 D PFAM: ATP-binding region, ATPase domain protein domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: mtc:MT1410 sensory box protein/anti-anti-sigma factor; stage II sporulation E family protein 2049787..2051322 Nocardioides sp. JS614 4596370 YP_923121.1 CDS Noca_1924 NC_008699.1 2051292 2052038 R PFAM: GAF domain protein; ANTAR domain protein; KEGG: sma:SAV1055 hypothetical protein; ANTAR domain-containing protein complement(2051292..2052038) Nocardioides sp. JS614 4596371 YP_923122.1 CDS Noca_1925 NC_008699.1 2052035 2052883 R PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: fra:Francci3_3755 sigma 28 subunit; sigma-70 region 4 domain-containing protein complement(2052035..2052883) Nocardioides sp. JS614 4596372 YP_923123.1 CDS Noca_1926 NC_008699.1 2053169 2054350 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sco:SCO6706 glutathione-dependent aldehyde dehydrogenase; alcohol dehydrogenase 2053169..2054350 Nocardioides sp. JS614 4596373 YP_923124.1 CDS Noca_1927 NC_008699.1 2054465 2056207 D TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: tfu:Tfu_0850 yeast 2-isopropylmalate synthase; 2-isopropylmalate synthase 2054465..2056207 Nocardioides sp. JS614 4596374 YP_923125.1 CDS Noca_1928 NC_008699.1 2056217 2058979 R KEGG: psb:Psyr_2940 PAS; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; MASE1 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase complement(2056217..2058979) Nocardioides sp. JS614 4596375 YP_923126.1 CDS Noca_1929 NC_008699.1 2059104 2059928 D PFAM: alpha/beta hydrolase fold; KEGG: gme:Gmet_0263 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 2059104..2059928 Nocardioides sp. JS614 4596376 YP_923127.1 CDS Noca_1930 NC_008699.1 2059958 2060692 D TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O, RecO; KEGG: sco:SCO2510 DNA repair protein RecO (recombination protein O); DNA repair protein RecO 2059958..2060692 Nocardioides sp. JS614 4596377 YP_923128.1 CDS Noca_1931 NC_008699.1 2060803 2062074 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: sth:STH843 two-component sensor histidine kinase; ATPase domain-containing protein 2060803..2062074 Nocardioides sp. JS614 4596378 YP_923129.1 CDS Noca_1932 NC_008699.1 2062114 2062929 D KEGG: tfu:Tfu_0853 di-trans-poly-cis-decaprenylcistransferase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl pyrophosphate synthetase 2062114..2062929 Nocardioides sp. JS614 4599837 YP_923130.1 CDS Noca_1933 NC_008699.1 2062938 2064545 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: sth:STH843 two-component sensor histidine kinase; ATPase domain-containing protein 2062938..2064545 Nocardioides sp. JS614 4599838 YP_923131.1 CDS Noca_1934 NC_008699.1 2064569 2064976 R PFAM: ferric-uptake regulator; KEGG: sma:SAV5631 putative metal uptake regulation protein; zinc uptake regulator complement(2064569..2064976) Nocardioides sp. JS614 4599839 YP_923132.1 CDS Noca_1935 NC_008699.1 2064963 2065976 R PFAM: ABC-3 protein; KEGG: sco:SCO2507 putative metal transport ABC transporter; ABC-3 protein complement(2064963..2065976) Nocardioides sp. JS614 4599840 YP_923133.1 CDS Noca_1936 NC_008699.1 2065973 2066836 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV5633 putative manganese transport system ABC transporter ATP-binding protein; ABC transporter-like protein complement(2065973..2066836) Nocardioides sp. JS614 4599841 YP_923134.1 CDS Noca_1937 NC_008699.1 2066833 2067768 R PFAM: periplasmic solute binding protein; KEGG: sco:SCO2505 putative ABC-transporter metal-binding lipoprotein; periplasmic solute binding protein complement(2066833..2067768) Nocardioides sp. JS614 4599842 YP_923135.1 CDS Noca_1938 NC_008699.1 2067916 2069697 D KEGG: sma:SAV2712 hypothetical protein; periplasmic component of the Tol biopolymer transport system-like 2067916..2069697 Nocardioides sp. JS614 4599843 YP_923136.1 CDS Noca_1939 NC_008699.1 2069739 2070059 D KEGG: tfu:Tfu_0860 hypothetical protein; hypothetical protein 2069739..2070059 Nocardioides sp. JS614 4599844 YP_923137.1 CDS Noca_1940 NC_008699.1 2070120 2071535 D Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase 2070120..2071535 Nocardioides sp. JS614 4599845 YP_923138.1 CDS Noca_1941 NC_008699.1 2071545 2072315 D hypothetical protein 2071545..2072315 Nocardioides sp. JS614 4599846 YP_923139.1 CDS Noca_1942 NC_008699.1 2072359 2073519 D TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; KEGG: pac:PPA0954 TIM-barrel enzyme, NifR3 family; nifR3 family TIM-barrel protein 2072359..2073519 Nocardioides sp. JS614 4599847 YP_923140.1 CDS Noca_1943 NC_008699.1 2073666 2074535 D KEGG: rha:RHA1_ro10028 possible peptidase; hypothetical protein 2073666..2074535 Nocardioides sp. JS614 4599848 YP_923141.1 CDS Noca_1944 NC_008699.1 2074566 2075252 R hypothetical protein complement(2074566..2075252) Nocardioides sp. JS614 4599849 YP_923142.1 CDS Noca_1945 NC_008699.1 2075341 2076612 D KEGG: fra:Francci3_1281 deoxyguanosinetriphosphate triphosphohydrolase; TIGRFAM: putative deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; putative deoxyguanosinetriphosphate triphosphohydrolase 2075341..2076612 Nocardioides sp. JS614 4599850 YP_923143.1 CDS Noca_1946 NC_008699.1 2076789 2077703 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: sma:SAV2735 dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase 2076789..2077703 Nocardioides sp. JS614 4599851 YP_923144.1 CDS Noca_1947 NC_008699.1 2077725 2080523 D KEGG: pac:PPA0957 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger, CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core, N-terminal domain; SMART: Hedgehog/intein hint domain protein; Toprim sub domain protein; DNA primase DnaG, DnaB-binding; DNA primase 2077725..2080523 Nocardioides sp. JS614 4599852 YP_923145.1 CDS Noca_1948 NC_008699.1 2080520 2081041 D KEGG: tfu:Tfu_0870 hypothetical protein; hypothetical protein 2080520..2081041 Nocardioides sp. JS614 4599853 YP_923146.1 CDS Noca_1949 NC_008699.1 2081269 2082153 D KEGG: rde:RD1_2353 hypothetical protein; hypothetical protein 2081269..2082153 Nocardioides sp. JS614 4599855 YP_923147.1 CDS Noca_1950 NC_008699.1 2082175 2082903 R KEGG: sus:Acid_2413 hypothetical protein; hypothetical protein complement(2082175..2082903) Nocardioides sp. JS614 4599856 YP_923148.1 CDS Noca_1951 NC_008699.1 2082948 2083661 R PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: ade:Adeh_2146 cytochrome c biogenesis protein; cytochrome c biogenesis protein, transmembrane region complement(2082948..2083661) Nocardioides sp. JS614 4599857 YP_923149.1 CDS Noca_1952 NC_008699.1 2083807 2084454 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mbu:Mbur_0983 ABC heme exporter, ATPase subunit; ABC transporter-like protein 2083807..2084454 Nocardioides sp. JS614 4599858 YP_923150.1 CDS Noca_1953 NC_008699.1 2084451 2085113 D PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: dra:DR0407 cytochrome c-type biogenesis protein, heme exporter protein B; cytochrome c-type biogenesis protein CcmB 2084451..2085113 Nocardioides sp. JS614 4599859 YP_923151.1 CDS Noca_1954 NC_008699.1 2085206 2086603 D KEGG: ade:Adeh_3151 putative lipoprotein; putative lipoprotein 2085206..2086603 Nocardioides sp. JS614 4599860 YP_923152.1 CDS Noca_1955 NC_008699.1 2086615 2087379 D PFAM: cytochrome c assembly protein; KEGG: dra:DR0348 cytochrome c-type biogenesis protein, heme exporter protein C; cytochrome c assembly protein 2086615..2087379 Nocardioides sp. JS614 4599861 YP_923153.1 CDS Noca_1956 NC_008699.1 2087372 2087521 D hypothetical protein 2087372..2087521 Nocardioides sp. JS614 4599862 YP_923154.1 CDS Noca_1957 NC_008699.1 2087518 2087982 D PFAM: CcmE/CycJ protein; KEGG: rpb:RPB_3449 CcmE/CycJ protein; CcmE/CycJ protein 2087518..2087982 Nocardioides sp. JS614 4599863 YP_923155.1 CDS Noca_1958 NC_008699.1 2087984 2089960 D PFAM: cytochrome c assembly protein; KEGG: mxa:MXAN_3253 cytochrome c-type biogenesis protein CcmF; cytochrome c assembly protein 2087984..2089960 Nocardioides sp. JS614 4599864 YP_923156.1 CDS Noca_1959 NC_008699.1 2089957 2090526 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; Thioredoxin domain; KEGG: mxa:MXAN_3252 thiol:disulfide interchange protein DsbE; redoxin domain-containing protein 2089957..2090526 Nocardioides sp. JS614 4599865 YP_923157.1 CDS Noca_1960 NC_008699.1 2090523 2091050 D PFAM: cytochrome C biogenesis protein; KEGG: dge:Dgeo_1249 cytochrome c biogenesis protein; cytochrome C biogenesis protein 2090523..2091050 Nocardioides sp. JS614 4599866 YP_923158.1 CDS Noca_1961 NC_008699.1 2091047 2091937 D KEGG: bbr:BB2811 cytochrome C-type biogenesis protein; hypothetical protein 2091047..2091937 Nocardioides sp. JS614 4599867 YP_923159.1 CDS Noca_1962 NC_008699.1 2091934 2093280 D PFAM: glutamyl-tRNA reductase; Shikimate/quinate 5-dehydrogenase; KEGG: rxy:Rxyl_1979 shikimate/quinate 5-dehydrogenase; glutamyl-tRNA reductase 2091934..2093280 Nocardioides sp. JS614 4599868 YP_923160.1 CDS Noca_1963 NC_008699.1 2093217 2093954 R PFAM: LmbE family protein; KEGG: sco:SCO0804 hypothetical protein; LmbE family protein complement(2093217..2093954) Nocardioides sp. JS614 4599869 YP_923161.1 CDS Noca_1964 NC_008699.1 2093994 2095016 D KEGG: sco:SCO0559 hypothetical protein; hypothetical protein 2093994..2095016 Nocardioides sp. JS614 4599870 YP_923162.1 CDS Noca_1965 NC_008699.1 2095048 2095896 D PFAM: protein of unknown function DUF72; KEGG: rha:RHA1_ro02437 hypothetical protein; hypothetical protein 2095048..2095896 Nocardioides sp. JS614 4599871 YP_923163.1 CDS Noca_1966 NC_008699.1 2096111 2097322 R PFAM: phage integrase family protein; KEGG: mmc:Mmcs_1422 phage integrase; phage integrase family protein complement(2096111..2097322) Nocardioides sp. JS614 4599873 YP_923164.1 CDS Noca_1967 NC_008699.1 2097322 2097954 R hypothetical protein complement(2097322..2097954) Nocardioides sp. JS614 4599874 YP_923165.1 CDS Noca_1968 NC_008699.1 2098245 2098616 D hypothetical protein 2098245..2098616 Nocardioides sp. JS614 4598280 YP_923166.1 CDS Noca_1969 NC_008699.1 2098613 2099647 D hypothetical protein 2098613..2099647 Nocardioides sp. JS614 4598281 YP_923167.1 CDS Noca_1970 NC_008699.1 2099818 2100768 D hypothetical protein 2099818..2100768 Nocardioides sp. JS614 4598282 YP_923168.1 CDS Noca_1971 NC_008699.1 2100839 2101267 D hypothetical protein 2100839..2101267 Nocardioides sp. JS614 4598283 YP_923169.1 CDS Noca_1972 NC_008699.1 2101396 2102808 D hypothetical protein 2101396..2102808 Nocardioides sp. JS614 4598284 YP_923170.1 CDS Noca_1973 NC_008699.1 2103090 2103407 D hypothetical protein 2103090..2103407 Nocardioides sp. JS614 4598285 YP_923171.1 CDS Noca_1974 NC_008699.1 2103474 2105081 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: aba:Acid345_1526 methyl-accepting chemotaxis sensory transducer; chemotaxis sensory transducer complement(2103474..2105081) Nocardioides sp. JS614 4598286 YP_923172.1 CDS Noca_1975 NC_008699.1 2105193 2105423 D KEGG: sco:SCO4166 integral membrane protein; hypothetical protein 2105193..2105423 Nocardioides sp. JS614 4598287 YP_923173.1 CDS Noca_1976 NC_008699.1 2105464 2105679 R KEGG: mmc:Mmcs_3634 hypothetical protein; hypothetical protein complement(2105464..2105679) Nocardioides sp. JS614 4598288 YP_923174.1 CDS Noca_1977 NC_008699.1 2105763 2108981 R KEGG: mca:MCA1204 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase complement(2105763..2108981) Nocardioides sp. JS614 4598289 YP_923175.1 CDS Noca_1978 NC_008699.1 2109017 2110465 R PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: nfa:nfa31920 putative serine/threonine protein kinase; protein kinase complement(2109017..2110465) Nocardioides sp. JS614 4598290 YP_923176.1 CDS Noca_1979 NC_008699.1 2110631 2111902 D KEGG: sco:SCO1818 tyrosyl-tRNA synthetase; TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase, class Ib; RNA-binding S4 domain protein; tyrosyl-tRNA synthetase 2110631..2111902 Nocardioides sp. JS614 4598291 YP_923177.1 CDS Noca_1980 NC_008699.1 2111905 2112975 D PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; ferredoxin-dependent glutamate synthase; KEGG: dra:DR1031 (S)-2-hydroxy-acid oxidase; FMN-dependent alpha-hydroxy acid dehydrogenase 2111905..2112975 Nocardioides sp. JS614 4598292 YP_923178.1 CDS Noca_1981 NC_008699.1 2118930 2119895 D KEGG: fra:Francci3_3166 tetratricopeptide TPR_2; hypothetical protein 2118930..2119895 Nocardioides sp. JS614 4598296 YP_923179.1 CDS Noca_1982 NC_008699.1 2119928 2120734 D PFAM: protein phosphatase 2C domain protein; KEGG: cef:CE0037 putative protein phosphatase; protein phosphatase 2C domain-containing protein 2119928..2120734 Nocardioides sp. JS614 4598297 YP_923180.1 CDS Noca_1983 NC_008699.1 2120753 2121685 D PFAM: alpha/beta hydrolase fold; KEGG: rha:RHA1_ro05212 probable hydrolase; alpha/beta hydrolase fold protein 2120753..2121685 Nocardioides sp. JS614 4598298 YP_923181.1 CDS Noca_1984 NC_008699.1 2121814 2122332 D KEGG: sco:SCO2391 hypothetical protein; hypothetical protein 2121814..2122332 Nocardioides sp. JS614 4598299 YP_923182.1 CDS Noca_1985 NC_008699.1 2122335 2122820 R hypothetical protein complement(2122335..2122820) Nocardioides sp. JS614 4598300 YP_923183.1 CDS Noca_1986 NC_008699.1 2122871 2124301 R PFAM: carboxyl transferase; KEGG: mmc:Mmcs_3368 propionyl-CoA carboxylase; propionyl-CoA carboxylase complement(2122871..2124301) Nocardioides sp. JS614 4598301 YP_923184.1 CDS Noca_1987 NC_008699.1 2124328 2125578 R PFAM: beta-ketoacyl synthase; KEGG: sma:SAV5785 putative 3-oxoacyl-ACP synthase II; 3-oxoacyl-ACP synthase complement(2124328..2125578) Nocardioides sp. JS614 4598302 YP_923185.1 CDS Noca_1988 NC_008699.1 2125604 2125849 R PFAM: phosphopantetheine-binding; KEGG: sco:SCO2389 acyl carrier protein; phosphopantetheine-binding protein complement(2125604..2125849) Nocardioides sp. JS614 4598303 YP_923186.1 CDS Noca_1989 NC_008699.1 2125883 2126887 R KEGG: sco:SCO2388 3-oxoacyl-[acyl-carrier-protein] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-oxoacyl-ACP synthase complement(2125883..2126887) Nocardioides sp. JS614 4598304 YP_923187.1 CDS Noca_1990 NC_008699.1 2126887 2128086 R KEGG: tfu:Tfu_1973 acyl-carrier-protein S-malonyltransferase; (acyl-carrier-protein) S-malonyltransferase complement(2126887..2128086) Nocardioides sp. JS614 4598305 YP_923188.1 CDS Noca_1991 NC_008699.1 2128165 2129376 R KEGG: sco:SCO2386 hypothetical protein; CdaR family transcriptional regulator complement(2128165..2129376) Nocardioides sp. JS614 4598306 YP_923189.1 CDS Noca_1992 NC_008699.1 2129507 2130451 D PFAM: alpha/beta hydrolase fold; KEGG: fal:FRAAL6021 putative hydrolase; alpha/beta hydrolase fold protein 2129507..2130451 Nocardioides sp. JS614 4598307 YP_923190.1 CDS aceE NC_008699.1 2130565 2133363 R E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 complement(2130565..2133363) Nocardioides sp. JS614 4598308 YP_923191.1 CDS Noca_1994 NC_008699.1 2133539 2133982 D KEGG: mmc:Mmcs_3360 hypothetical protein; hypothetical protein 2133539..2133982 Nocardioides sp. JS614 4598309 YP_923192.1 CDS Noca_1995 NC_008699.1 2134101 2135726 D PFAM: AMP-dependent synthetase and ligase; KEGG: mmc:Mmcs_3758 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 2134101..2135726 Nocardioides sp. JS614 4598310 YP_923193.1 CDS Noca_1996 NC_008699.1 2135760 2136224 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sco:SCO2369 thiol-specific antioxidant protein; redoxin domain-containing protein 2135760..2136224 Nocardioides sp. JS614 4598311 YP_923194.1 CDS Noca_1997 NC_008699.1 2136688 2137848 D PFAM: UspA domain protein; KEGG: mmc:Mmcs_1097 UspA; UspA domain-containing protein 2136688..2137848 Nocardioides sp. JS614 4598313 YP_923195.1 CDS Noca_1998 NC_008699.1 2137927 2140326 D TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; PFAM: NAD-dependent epimerase/dehydratase; Male sterility C-terminal domain; KEGG: fal:FRAAL3759 putative fatty acyl coA reductase; HAD family hydrolase 2137927..2140326 Nocardioides sp. JS614 4598314 YP_923196.1 CDS Noca_1999 NC_008699.1 2140340 2141527 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rxy:Rxyl_2111 alcohol dehydrogenase, zinc-binding protein; alcohol dehydrogenase 2140340..2141527 Nocardioides sp. JS614 4598315 YP_923197.1 CDS Noca_2000 NC_008699.1 2141538 2143118 D KEGG: rxy:Rxyl_2107 hypothetical protein; hypothetical protein 2141538..2143118 Nocardioides sp. JS614 4598316 YP_923198.1 CDS Noca_2001 NC_008699.1 2143123 2144049 D PFAM: phospholipid/glycerol acyltransferase; KEGG: fra:Francci3_2279 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 2143123..2144049 Nocardioides sp. JS614 4598623 YP_923199.1 CDS Noca_2002 NC_008699.1 2144060 2145205 R TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: lxx:Lxx21010 iron-dependent peroxidase; Dyp-type peroxidase family protein complement(2144060..2145205) Nocardioides sp. JS614 4598624 YP_923200.1 CDS Noca_2003 NC_008699.1 2145205 2145753 R PFAM: protein of unknown function DUF461; KEGG: mmc:Mmcs_1601 protein of unknown function DUF461; hypothetical protein complement(2145205..2145753) Nocardioides sp. JS614 4598625 YP_923201.1 CDS Noca_2004 NC_008699.1 2145858 2146562 R KEGG: sma:SAV899 hypothetical protein; hypothetical protein complement(2145858..2146562) Nocardioides sp. JS614 4598626 YP_923202.1 CDS Noca_2005 NC_008699.1 2147198 2148049 D PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: mmc:Mmcs_0015 serine/threonine protein kinase; protein kinase 2147198..2148049 Nocardioides sp. JS614 4598627 YP_923203.1 CDS Noca_2006 NC_008699.1 2148057 2148728 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sco:SCO2143 two component system response regulator; response regulator receiver complement(2148057..2148728) Nocardioides sp. JS614 4598628 YP_923204.1 CDS Noca_2007 NC_008699.1 2148713 2150239 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: tfu:Tfu_1329 ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal; ATPase domain-containing protein complement(2148713..2150239) Nocardioides sp. JS614 4598629 YP_923205.1 CDS Noca_2008 NC_008699.1 2150184 2150561 R KEGG: osa:4332873 Os03g0357500; hypothetical protein complement(2150184..2150561) Nocardioides sp. JS614 4598630 YP_923206.1 CDS Noca_2009 NC_008699.1 2150726 2152291 D PFAM: AMP-dependent synthetase and ligase; KEGG: fra:Francci3_2165 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 2150726..2152291 Nocardioides sp. JS614 4598631 YP_923207.1 CDS Noca_2010 NC_008699.1 2152288 2152833 R PFAM: nitrogen-fixing NifU domain protein; KEGG: lxx:Lxx21000 thioredoxin-like protein; NifU domain-containing protein complement(2152288..2152833) Nocardioides sp. JS614 4598632 YP_923208.1 CDS Noca_2011 NC_008699.1 2152830 2154776 R PFAM: GTP-binding protein, HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: pac:PPA1677 ferrous iron transport protein B; HSR1-like GTP-binding protein complement(2152830..2154776) Nocardioides sp. JS614 4598633 YP_923209.1 CDS Noca_2012 NC_008699.1 2154773 2155018 R PFAM: FeoA family protein; KEGG: lip:LI1082 Fe2+ transport system protein A; FeoA family protein complement(2154773..2155018) Nocardioides sp. JS614 4598634 YP_923210.1 CDS Noca_2013 NC_008699.1 2155598 2156731 D PFAM: protein of unknown function DUF34; KEGG: rha:RHA1_ro01183 hypothetical protein; hypothetical protein 2155598..2156731 Nocardioides sp. JS614 4598635 YP_923211.1 CDS Noca_2014 NC_008699.1 2156804 2157508 D PFAM: protein of unknown function DUF164; KEGG: fal:FRAAL2220 conserved hypothetical protein; putative coiled-coil domain; hypothetical protein 2156804..2157508 Nocardioides sp. JS614 4598636 YP_923212.1 CDS Noca_2015 NC_008699.1 2157505 2158710 D PFAM: ribonuclease H; Phosphoglycerate mutase; KEGG: sma:SAV5877 hypothetical protein; phosphoglycerate mutase 2157505..2158710 Nocardioides sp. JS614 4598637 YP_923213.1 CDS Noca_2016 NC_008699.1 2158832 2159587 R PFAM: protein of unknown function DUF328; KEGG: sco:SCO2297 hypothetical protein; hypothetical protein complement(2158832..2159587) Nocardioides sp. JS614 4598638 YP_923214.1 CDS Noca_2017 NC_008699.1 2159651 2161054 D PFAM: ribonuclease II; KEGG: sma:SAV5880 ribonuclease R; ribonuclease II 2159651..2161054 Nocardioides sp. JS614 4598639 YP_923215.1 CDS Noca_2018 NC_008699.1 2161203 2162423 D PFAM: phosphoribosyltransferase; dienelactone hydrolase; KEGG: mbo:Mb0586c hypothetical protein; phosphoribosyltransferase 2161203..2162423 Nocardioides sp. JS614 4598640 YP_923216.1 CDS Noca_2019 NC_008699.1 2162401 2164926 R PFAM: AMP-dependent synthetase and ligase; KEGG: rha:RHA1_ro07030 possible acyl-CoA synthetase; AMP-dependent synthetase and ligase complement(2162401..2164926) Nocardioides sp. JS614 4598641 YP_923217.1 CDS Noca_2020 NC_008699.1 2164923 2165984 R PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: fra:Francci3_1590 ABC transporter related; ABC transporter-like protein complement(2164923..2165984) Nocardioides sp. JS614 4598642 YP_923218.1 CDS Noca_2021 NC_008699.1 2165981 2167549 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fra:Francci3_1591 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(2165981..2167549) Nocardioides sp. JS614 4598643 YP_923219.1 CDS Noca_2022 NC_008699.1 2167558 2168559 R PFAM: extracellular solute-binding protein, family 1; KEGG: fra:Francci3_1592 extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(2167558..2168559) Nocardioides sp. JS614 4598644 YP_923220.1 CDS Noca_2023 NC_008699.1 2168656 2169744 D KEGG: sil:SPO2120 amidinotransferase family protein; amidinotransferase family protein 2168656..2169744 Nocardioides sp. JS614 4598645 YP_923221.1 CDS Noca_2024 NC_008699.1 2169787 2170188 R KEGG: mbo:Mb2042 hypothetical protein; hypothetical protein complement(2169787..2170188) Nocardioides sp. JS614 4598646 YP_923222.1 CDS Noca_2025 NC_008699.1 2170202 2170924 R KEGG: fra:Francci3_0955 conserved hypothetical protein; hypothetical protein complement(2170202..2170924) Nocardioides sp. JS614 4598647 YP_923223.1 CDS Noca_2026 NC_008699.1 2171263 2172630 D KEGG: fal:FRAAL5813 hypothetical protein; hypothetical protein 2171263..2172630 Nocardioides sp. JS614 4598648 YP_923224.1 CDS Noca_2027 NC_008699.1 2172664 2173011 D hypothetical protein 2172664..2173011 Nocardioides sp. JS614 4598649 YP_923225.1 CDS Noca_2028 NC_008699.1 2173001 2173480 D hypothetical protein 2173001..2173480 Nocardioides sp. JS614 4598650 YP_923226.1 CDS Noca_2029 NC_008699.1 2173858 2174196 R KEGG: cef:CE2619 putative transposase; hypothetical protein complement(2173858..2174196) Nocardioides sp. JS614 4598651 YP_923227.1 CDS Noca_2030 NC_008699.1 2174177 2175616 R PFAM: Integrase, catalytic region; KEGG: mmc:Mmcs_5505 integrase, catalytic region; integrase catalytic subunit complement(2174177..2175616) Nocardioides sp. JS614 4598652 YP_923228.1 CDS Noca_2032 NC_008699.1 2176326 2176646 R PFAM: transposase IS3/IS911 family protein; KEGG: cef:CE2618 putative transposase; transposase IS3/IS911 family protein complement(2176326..2176646) Nocardioides sp. JS614 4598654 YP_923229.1 CDS Noca_2033 NC_008699.1 2176765 2177253 D KEGG: sco:SCO7806 DNA-binding protein; DNA-binding protein 2176765..2177253 Nocardioides sp. JS614 4598655 YP_923230.1 CDS Noca_2034 NC_008699.1 2177285 2178670 R PFAM: amino acid-binding ACT domain protein; malic enzyme domain protein; malic enzyme, NAD-binding; KEGG: rha:RHA1_ro00492 malate dehydrogenase (oxaloacetate-decarboxylating); malate dehydrogenase complement(2177285..2178670) Nocardioides sp. JS614 4598656 YP_923231.1 CDS Noca_2035 NC_008699.1 2179170 2179937 R KEGG: mbo:Mb2021c hypothetical protein; hypothetical protein complement(2179170..2179937) Nocardioides sp. JS614 4598658 YP_923232.1 CDS Noca_2036 NC_008699.1 2179971 2180330 R hypothetical protein complement(2179971..2180330) Nocardioides sp. JS614 4598659 YP_923233.1 CDS Noca_2037 NC_008699.1 2180462 2180926 D KEGG: sma:SAV6236 hypothetical protein; hypothetical protein 2180462..2180926 Nocardioides sp. JS614 4598660 YP_923234.1 CDS Noca_2038 NC_008699.1 2181044 2181871 R TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: sco:SCO2266 methionine aminopeptidase; methionine aminopeptidase complement(2181044..2181871) Nocardioides sp. JS614 4598661 YP_923235.1 CDS Noca_2039 NC_008699.1 2182353 2183210 R hypothetical protein complement(2182353..2183210) Nocardioides sp. JS614 4598662 YP_923236.1 CDS Noca_2040 NC_008699.1 2183254 2184510 R PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: cef:CE0204 putative transport protein; hypothetical protein complement(2183254..2184510) Nocardioides sp. JS614 4598663 YP_923237.1 CDS Noca_2041 NC_008699.1 2184532 2185695 R PFAM: glucose sorbosone dehydrogenase; KEGG: rha:RHA1_ro05704 hypothetical protein; glucose sorbosone dehydrogenase complement(2184532..2185695) Nocardioides sp. JS614 4595795 YP_923238.1 CDS panB NC_008699.1 2185754 2186641 R catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(2185754..2186641) Nocardioides sp. JS614 4595796 YP_923239.1 CDS Noca_2043 NC_008699.1 2186799 2187548 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mmc:Mmcs_4099 methyltransferase type 11; type 11 methyltransferase 2186799..2187548 Nocardioides sp. JS614 4595797 YP_923240.1 CDS nadE NC_008699.1 2187588 2189633 D catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 2187588..2189633 Nocardioides sp. JS614 4595798 YP_923241.1 CDS Noca_2045 NC_008699.1 2189903 2190370 D hypothetical protein 2189903..2190370 Nocardioides sp. JS614 4595799 YP_923242.1 CDS Noca_2046 NC_008699.1 2190351 2191718 D PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp; KEGG: sco:SCO2241 probable glutamine synthetase; L-glutamine synthetase 2190351..2191718 Nocardioides sp. JS614 4595800 YP_923243.1 CDS Noca_2047 NC_008699.1 2191715 2192437 D PFAM: glutamine amidotransferase class-I; KEGG: sco:SCO0603 amino transferase; glutamine amidotransferase 2191715..2192437 Nocardioides sp. JS614 4595801 YP_923244.1 CDS Noca_2048 NC_008699.1 2192434 2195421 D catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 2192434..2195421 Nocardioides sp. JS614 4595802 YP_923245.1 CDS Noca_2049 NC_008699.1 2195596 2195973 D hypothetical protein 2195596..2195973 Nocardioides sp. JS614 4595803 YP_923246.1 CDS Noca_2050 NC_008699.1 2195970 2196722 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rha:RHA1_ro11203 response regulator, two-component system; response regulator receiver complement(2195970..2196722) Nocardioides sp. JS614 4595804 YP_923247.1 CDS Noca_2051 NC_008699.1 2196787 2197281 R PFAM: regulatory protein, MarR; KEGG: rha:RHA1_ro01019 probable transcriptional regulator, MarR family; regulatory protein MarR complement(2196787..2197281) Nocardioides sp. JS614 4595805 YP_923248.1 CDS Noca_2052 NC_008699.1 2197392 2197967 D PFAM: NADP oxidoreductase, coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: cgb:cg1421 putative dinucleotide-binding enzyme; NADP oxidoreductase, coenzyme F420-dependent 2197392..2197967 Nocardioides sp. JS614 4595806 YP_923249.1 CDS Noca_2053 NC_008699.1 2198024 2198569 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nfa:nfa20320 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 2198024..2198569 Nocardioides sp. JS614 4595807 YP_923250.1 CDS Noca_2054 NC_008699.1 2198566 2199711 D PFAM: phospholipase/Carboxylesterase; KEGG: nph:NP0926A hypothetical protein; phospholipase/carboxylesterase 2198566..2199711 Nocardioides sp. JS614 4595808 YP_923251.1 CDS Noca_2055 NC_008699.1 2199708 2200487 D PFAM: Hydratase/decarboxylase; KEGG: mxa:MXAN_0925 putative 4-oxalocrotonate decarboxylase; 4-oxalocrotonate decarboxylase 2199708..2200487 Nocardioides sp. JS614 4595809 YP_923252.1 CDS Noca_2056 NC_008699.1 2200491 2201129 R PFAM: cation efflux protein; KEGG: cgb:cg2271 Co/Zn/Cd efflux system component; cation efflux protein complement(2200491..2201129) Nocardioides sp. JS614 4595810 YP_923253.1 CDS Noca_2057 NC_008699.1 2201126 2201884 R PFAM: polysaccharide deacetylase; KEGG: sco:SCO1129 secreted deacetylase; polysaccharide deacetylase complement(2201126..2201884) Nocardioides sp. JS614 4595811 YP_923254.1 CDS Noca_2058 NC_008699.1 2201881 2203002 R PFAM: Monogalactosyldiacylglycerol synthase; KEGG: sco:SCO1126 hypothetical protein; monogalactosyldiacylglycerol synthase complement(2201881..2203002) Nocardioides sp. JS614 4595812 YP_923255.1 CDS Noca_2059 NC_008699.1 2203123 2203737 D PFAM: phosphoesterase, PA-phosphatase related; KEGG: sco:SCO4133 integral membrane protein; undecaprenyl-diphosphatase 2203123..2203737 Nocardioides sp. JS614 4595813 YP_923256.1 CDS Noca_2060 NC_008699.1 2203734 2204453 D KEGG: fal:FRAAL3677 hypothetical protein; putative DedA family membrane protein; hypothetical protein 2203734..2204453 Nocardioides sp. JS614 4595814 YP_923257.1 CDS Noca_2061 NC_008699.1 2204632 2205942 D KEGG: sma:SAV2242 hypothetical protein; hypothetical protein 2204632..2205942 Nocardioides sp. JS614 4595815 YP_923258.1 CDS Noca_2062 NC_008699.1 2205939 2206625 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: fra:Francci3_2401 two component transcriptional regulator, winged helix family; two component transcriptional regulator 2205939..2206625 Nocardioides sp. JS614 4595816 YP_923259.1 CDS Noca_2063 NC_008699.1 2206622 2208067 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: gsu:GSU0452 sensor histidine kinase; ATPase domain-containing protein 2206622..2208067 Nocardioides sp. JS614 4595817 YP_923260.1 CDS Noca_2064 NC_008699.1 2208136 2209155 D PFAM: phosphoesterase, PA-phosphatase related; KEGG: vpa:VP2408 hypothetical protein; PA-phosphatase-like phosphoesterase 2208136..2209155 Nocardioides sp. JS614 4595818 YP_923261.1 CDS Noca_2065 NC_008699.1 2209172 2211424 D PFAM: glycosyl transferase, group 1; KEGG: rxy:Rxyl_2620 phosphatidyl-myo-inositol alpha-mannosyltransferase; group 1 glycosyl transferase 2209172..2211424 Nocardioides sp. JS614 4595819 YP_923262.1 CDS Noca_2066 NC_008699.1 2211435 2212217 D PFAM: LmbE family protein; KEGG: rha:RHA1_ro02076 possible LmbE-related protein; LmbE family protein 2211435..2212217 Nocardioides sp. JS614 4595820 YP_923263.1 CDS Noca_2067 NC_008699.1 2212469 2213116 D PFAM: CDP-alcohol phosphatidyltransferase; KEGG: sco:SCO3457 transmembrane protein; CDP-alcohol phosphatidyltransferase 2212469..2213116 Nocardioides sp. JS614 4595821 YP_923264.1 CDS Noca_2068 NC_008699.1 2213140 2214414 D KEGG: sco:SCO3456 putative secreted protein; putative ABC transporter solute-binding protein 2213140..2214414 Nocardioides sp. JS614 4595822 YP_923265.1 CDS Noca_2069 NC_008699.1 2214411 2215292 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cyb:CYB_0132 ABC transporter, permease protein; binding-protein-dependent transport systems inner membrane component 2214411..2215292 Nocardioides sp. JS614 4595823 YP_923266.1 CDS Noca_2070 NC_008699.1 2215289 2216104 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO3454 putative ABC-transporter membrane protein; binding-protein-dependent transport systems inner membrane component 2215289..2216104 Nocardioides sp. JS614 4595824 YP_923267.1 CDS Noca_2071 NC_008699.1 2216101 2217189 D PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: mmc:Mmcs_5124 ABC transporter related; ABC transporter-like protein 2216101..2217189 Nocardioides sp. JS614 4595825 YP_923268.1 CDS Noca_2072 NC_008699.1 2217186 2217863 D KEGG: sco:SCO3458 integral membrane protein; integral membrane protein 2217186..2217863 Nocardioides sp. JS614 4595826 YP_923269.1 CDS Noca_2073 NC_008699.1 2218202 2219578 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: sco:SCO3443 putative pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulfide oxidoreductase dimerisation region complement(2218202..2219578) Nocardioides sp. JS614 4595827 YP_923270.1 CDS Noca_2074 NC_008699.1 2219575 2219883 R PFAM: protein of unknown function DUF427; KEGG: dge:Dgeo_1745 protein of unknown function DUF427; hypothetical protein complement(2219575..2219883) Nocardioides sp. JS614 4595828 YP_923271.1 CDS Noca_2075 NC_008699.1 2219880 2220773 R PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: mpa:MAP2941c hypothetical protein; cytochrome c biogenesis protein, transmembrane region complement(2219880..2220773) Nocardioides sp. JS614 4595829 YP_923272.1 CDS Noca_2076 NC_008699.1 2220790 2221299 R PFAM: Redoxin domain protein; KEGG: mbo:Mb1704 probable conserved lipoprotein DsbF; redoxin domain-containing protein complement(2220790..2221299) Nocardioides sp. JS614 4595521 YP_923273.1 CDS Noca_2077 NC_008699.1 2221459 2222148 R PFAM: glutaredoxin; KEGG: sco:SCO3442 hypothetical protein; glutaredoxin complement(2221459..2222148) Nocardioides sp. JS614 4595522 YP_923274.1 CDS Noca_2078 NC_008699.1 2222271 2222915 R PFAM: isochorismatase hydrolase; KEGG: cps:CPS_1616 isochorismatase family protein; isochorismatase hydrolase complement(2222271..2222915) Nocardioides sp. JS614 4595523 YP_923275.1 CDS Noca_2079 NC_008699.1 2223028 2223993 R PFAM: protein of unknown function DUF81; KEGG: hma:rrnAC2453 hypothetical protein; hypothetical protein complement(2223028..2223993) Nocardioides sp. JS614 4595524 YP_923276.1 CDS Noca_2080 NC_008699.1 2223996 2224466 R KEGG: fra:Francci3_1889 glycoside hydrolase 15-related; hypothetical protein complement(2223996..2224466) Nocardioides sp. JS614 4595525 YP_923277.1 CDS Noca_2081 NC_008699.1 2224806 2225213 D PFAM: DoxX family protein; KEGG: mxa:MXAN_6975 DoxX family protein; DoxX family protein 2224806..2225213 Nocardioides sp. JS614 4595526 YP_923278.1 CDS Noca_2082 NC_008699.1 2225403 2226137 R KEGG: nfa:nfa13250 hypothetical protein; hypothetical protein complement(2225403..2226137) Nocardioides sp. JS614 4595527 YP_923279.1 CDS Noca_2083 NC_008699.1 2226232 2226810 R TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: rba:RB9569 probable Mip; alkylhydroperoxidase complement(2226232..2226810) Nocardioides sp. JS614 4595528 YP_923280.1 CDS Noca_2084 NC_008699.1 2226909 2227601 D PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: mtc:MT1714 transcriptional regulator, Crp/Fnr family; cyclic nucleotide-binding protein 2226909..2227601 Nocardioides sp. JS614 4595529 YP_923281.1 CDS Noca_2085 NC_008699.1 2227699 2228643 D PFAM: Patatin; KEGG: rha:RHA1_ro01898 possible lipid acyl hydrolase; patatin 2227699..2228643 Nocardioides sp. JS614 4595530 YP_923282.1 CDS Noca_2086 NC_008699.1 2228897 2230105 R KEGG: sil:SPO2232 hypothetical protein; hypothetical protein complement(2228897..2230105) Nocardioides sp. JS614 4595531 YP_923283.1 CDS Noca_2087 NC_008699.1 2230255 2232078 D PFAM: Radical SAM domain protein; KEGG: sco:SCO3462 hypothetical protein; radical SAM domain-containing protein 2230255..2232078 Nocardioides sp. JS614 4595532 YP_923284.1 CDS Noca_2088 NC_008699.1 2231905 2233359 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: sco:SCO3460 putative mercuric dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(2231905..2233359) Nocardioides sp. JS614 4595533 YP_923285.1 CDS Noca_2089 NC_008699.1 2233356 2233634 R hypothetical protein complement(2233356..2233634) Nocardioides sp. JS614 4595534 YP_923286.1 CDS Noca_2090 NC_008699.1 2233631 2234194 R PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sco:SCO3450 putative RNA polymerase sigma factor; sigma-70 region 2 domain-containing protein complement(2233631..2234194) Nocardioides sp. JS614 4595535 YP_923287.1 CDS Noca_2091 NC_008699.1 2234373 2235626 D PFAM: transcriptional regulator domain protein; GAF domain protein; KEGG: sma:SAV7178 transcriptional regulator; transcriptional regulator 2234373..2235626 Nocardioides sp. JS614 4595536 YP_923288.1 CDS Noca_2092 NC_008699.1 2235707 2237230 D PFAM: aldehyde dehydrogenase; KEGG: sma:SAV7177 putative aldehyde dehydrogenase; aldehyde dehydrogenase 2235707..2237230 Nocardioides sp. JS614 4595537 YP_923289.1 CDS Noca_2093 NC_008699.1 2237401 2238018 D PFAM: protein of unknown function DUF1486; KEGG: mac:MA1575 hypothetical protein; hypothetical protein 2237401..2238018 Nocardioides sp. JS614 4595538 YP_923290.1 CDS Noca_2094 NC_008699.1 2238076 2238381 R hypothetical protein complement(2238076..2238381) Nocardioides sp. JS614 4595539 YP_923291.1 CDS Noca_2095 NC_008699.1 2238419 2239969 R PFAM: aldehyde dehydrogenase; KEGG: nfa:nfa3930 putative aldehyde dehydrogenase; aldehyde dehydrogenase complement(2238419..2239969) Nocardioides sp. JS614 4595540 YP_923292.1 CDS Noca_2096 NC_008699.1 2239966 2240400 R hypothetical protein complement(2239966..2240400) Nocardioides sp. JS614 4595541 YP_923293.1 CDS Noca_2097 NC_008699.1 2240408 2241820 R PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; KEGG: abo:ABO_1174 GMC oxidoreductase family protein; glucose-methanol-choline oxidoreductase complement(2240408..2241820) Nocardioides sp. JS614 4595542 YP_923294.1 CDS Noca_2098 NC_008699.1 2241817 2242416 R PFAM: regulatory protein, TetR; KEGG: nfa:nfa6460 putative transcriptional regulator; TetR family transcriptional regulator complement(2241817..2242416) Nocardioides sp. JS614 4595543 YP_923295.1 CDS Noca_2099 NC_008699.1 2242607 2243365 D hypothetical protein 2242607..2243365 Nocardioides sp. JS614 4595544 YP_923296.1 CDS Noca_2100 NC_008699.1 2243435 2243671 R KEGG: mag:amb3531 hypothetical protein; hypothetical protein complement(2243435..2243671) Nocardioides sp. JS614 4595545 YP_923297.1 CDS Noca_2101 NC_008699.1 2243747 2246482 R PFAM: multicopper oxidase, type 3; KEGG: pac:PPA0092 hypothetical protein; multicopper oxidase, type 3 complement(2243747..2246482) Nocardioides sp. JS614 4599945 YP_923298.1 CDS Noca_2102 NC_008699.1 2246479 2247615 R KEGG: pac:PPA0093 hypothetical membrane protein; hypothetical protein complement(2246479..2247615) Nocardioides sp. JS614 4599946 YP_923299.1 CDS Noca_2103 NC_008699.1 2247653 2248132 R hypothetical protein complement(2247653..2248132) Nocardioides sp. JS614 4599947 YP_923300.1 CDS Noca_2104 NC_008699.1 2248133 2248573 R PFAM: OsmC family protein; KEGG: rxy:Rxyl_0142 OsmC-like protein; OsmC family protein complement(2248133..2248573) Nocardioides sp. JS614 4599948 YP_923301.1 CDS aceE NC_008699.1 2248629 2251307 R E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 complement(2248629..2251307) Nocardioides sp. JS614 4599949 YP_923302.1 CDS Noca_2106 NC_008699.1 2251355 2252032 R PFAM: regulatory protein, ArsR; KEGG: rha:RHA1_ro08261 possible transcriptional regulator, MarR family; transcriptional regulator complement(2251355..2252032) Nocardioides sp. JS614 4599950 YP_923303.1 CDS Noca_2107 NC_008699.1 2252089 2252703 R PFAM: protein of unknown function DUF664; KEGG: sco:SCO2990 hypothetical protein; hypothetical protein complement(2252089..2252703) Nocardioides sp. JS614 4599951 YP_923304.1 CDS Noca_2108 NC_008699.1 2252736 2255084 R PFAM: peptidase S15; X-Pro dipeptidyl-peptidase C-terminal domain protein; KEGG: nfa:nfa43000 putative esterase; peptidase S15 complement(2252736..2255084) Nocardioides sp. JS614 4599952 YP_923305.1 CDS Noca_2109 NC_008699.1 2255102 2255632 R KEGG: sma:SAV6531 hypothetical protein; hypothetical protein complement(2255102..2255632) Nocardioides sp. JS614 4599953 YP_923306.1 CDS Noca_2110 NC_008699.1 2255641 2256351 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mmc:Mmcs_3016 ABC transporter related; ABC transporter-like protein complement(2255641..2256351) Nocardioides sp. JS614 4599954 YP_923307.1 CDS Noca_2111 NC_008699.1 2256348 2257166 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bbr:BB1157 high-affinity branched-chain amino acid transport ATP-binding protein; ABC transporter-like protein complement(2256348..2257166) Nocardioides sp. JS614 4599955 YP_923308.1 CDS Noca_2112 NC_008699.1 2257153 2258283 R PFAM: inner-membrane translocator; KEGG: bxe:Bxe_A2754 ABC branched chain amino acid family transporter, inner membrane subunit; inner-membrane translocator complement(2257153..2258283) Nocardioides sp. JS614 4599956 YP_923309.1 CDS Noca_2113 NC_008699.1 2258280 2259188 R PFAM: inner-membrane translocator; KEGG: mes:Meso_0478 inner-membrane translocator; inner-membrane translocator complement(2258280..2259188) Nocardioides sp. JS614 4599957 YP_923310.1 CDS Noca_2114 NC_008699.1 2259185 2260609 R PFAM: Extracellular ligand-binding receptor; KEGG: tfu:Tfu_1779 hypothetical protein; extracellular ligand-binding receptor complement(2259185..2260609) Nocardioides sp. JS614 4599958 YP_923311.1 CDS Noca_2115 NC_008699.1 2260606 2261691 R KEGG: mxa:MXAN_1131 hypothetical protein; hypothetical protein complement(2260606..2261691) Nocardioides sp. JS614 4599959 YP_923312.1 CDS Noca_2116 NC_008699.1 2261932 2262309 D PFAM: DGPFAETKE family protein; KEGG: ade:Adeh_1007 DGPFAETKE domain-containing protein; DGPFAETKE family protein 2261932..2262309 Nocardioides sp. JS614 4599960 YP_923313.1 CDS Noca_2117 NC_008699.1 2262345 2263613 D PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: mxa:MXAN_5731 RNA polymerase sigma-70 factor, ECF subfamily; sigma-70 region 2 domain-containing protein 2262345..2263613 Nocardioides sp. JS614 4599961 YP_923314.1 CDS Noca_2118 NC_008699.1 2263709 2264230 D KEGG: nfa:nfa31490 hypothetical protein; hypothetical protein 2263709..2264230 Nocardioides sp. JS614 4599962 YP_923315.1 CDS Noca_2119 NC_008699.1 2264684 2267194 D PFAM: ABC transporter related; KEGG: blo:BL1083 excinuclease ABC subunit A-like protein; ABC transporter-like protein 2264684..2267194 Nocardioides sp. JS614 4599963 YP_923316.1 CDS Noca_2120 NC_008699.1 2267364 2268464 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rxy:Rxyl_1758 alcohol dehydrogenase, zinc-binding protein; alcohol dehydrogenase 2267364..2268464 Nocardioides sp. JS614 4599964 YP_923317.1 CDS Noca_2121 NC_008699.1 2268596 2268862 D hypothetical protein 2268596..2268862 Nocardioides sp. JS614 4599965 YP_923318.1 CDS Noca_2122 NC_008699.1 2269010 2269612 D PFAM: protein of unknown function DUF1326; KEGG: rde:RD1_2286 hypothetical protein; hypothetical protein 2269010..2269612 Nocardioides sp. JS614 4599966 YP_923319.1 CDS Noca_2123 NC_008699.1 2269698 2270432 D KEGG: bca:BCE_A0200 hypothetical protein; hypothetical protein 2269698..2270432 Nocardioides sp. JS614 4599967 YP_923320.1 CDS Noca_2124 NC_008699.1 2271013 2272056 R PFAM: high-affinity nickel-transporter; KEGG: mpa:MAP2924 NicT; high-affinity nickel-transporter complement(2271013..2272056) Nocardioides sp. JS614 4599968 YP_923321.1 CDS Noca_2125 NC_008699.1 2272864 2274102 D PFAM: transposase IS116/IS110/IS902 family protein; KEGG: rha:RHA1_ro01400 probable transposase; transposase IS116/IS110/IS902 family protein 2272864..2274102 Nocardioides sp. JS614 4599969 YP_923322.1 CDS Noca_2126 NC_008699.1 2274395 2274859 R KEGG: mmc:Mmcs_4295 integrase, catalytic region; integrase catalytic subunit complement(2274395..2274859) Nocardioides sp. JS614 4599970 YP_923323.1 CDS Noca_2127 NC_008699.1 2275946 2276941 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: nfa:nfa10390 putative enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase/isomerase complement(2275946..2276941) Nocardioides sp. JS614 4599971 YP_923324.1 CDS Noca_2128 NC_008699.1 2277031 2277549 D PFAM: cobalamin B12-binding domain protein; KEGG: hwa:HQ2301A methylmalonyl-CoA mutase, subunit B (cobalamin-binding subunit); cobalamin B12-binding domain-containing protein 2277031..2277549 Nocardioides sp. JS614 4599972 YP_923325.1 CDS Noca_2129 NC_008699.1 2277546 2278964 D KEGG: rpd:RPD_3222 phenylacetate--CoA ligase; phenylacetate--CoA ligase 2277546..2278964 Nocardioides sp. JS614 4599973 YP_923326.1 CDS Noca_2130 NC_008699.1 2278964 2279947 D KEGG: pfu:PF1947 hypothetical protein; TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; SMART: AAA ATPase; LAO/AO transport system ATPase 2278964..2279947 Nocardioides sp. JS614 4599190 YP_923327.1 CDS Noca_2131 NC_008699.1 2279960 2281669 D KEGG: pho:PH1306 563aa long hypothetical methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; methylmalonyl-CoA mutase 2279960..2281669 Nocardioides sp. JS614 4599191 YP_923328.1 CDS Noca_2132 NC_008699.1 2281734 2282474 D PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: mmc:Mmcs_4384 GntR-like protein; GntR family transcriptional regulator 2281734..2282474 Nocardioides sp. JS614 4599192 YP_923329.1 CDS Noca_2133 NC_008699.1 2282542 2283318 R PFAM: regulatory proteins, IclR; KEGG: rha:RHA1_ro02487 transcriptional regulator, IclR family; IclR family transcriptional regulator complement(2282542..2283318) Nocardioides sp. JS614 4599193 YP_923330.1 CDS Noca_2134 NC_008699.1 2283410 2284618 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rha:RHA1_ro01381 possible ferredoxin--NAD(+) reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(2283410..2284618) Nocardioides sp. JS614 4599194 YP_923331.1 CDS Noca_2135 NC_008699.1 2284615 2284965 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: sma:SAV6327 ferredoxin subunit of phenylpropionate dioxygenase; Rieske (2Fe-2S) domain-containing protein complement(2284615..2284965) Nocardioides sp. JS614 4599195 YP_923332.1 CDS Noca_2136 NC_008699.1 2285020 2285844 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pfl:PFL_3855 cis-1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase; short-chain dehydrogenase/reductase SDR complement(2285020..2285844) Nocardioides sp. JS614 4599196 YP_923333.1 CDS Noca_2137 NC_008699.1 2285841 2287193 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: fal:FRAAL6167 hypothetical protein; putative dioxygenase; Rieske (2Fe-2S) domain-containing protein complement(2285841..2287193) Nocardioides sp. JS614 4599197 YP_923334.1 CDS Noca_2138 NC_008699.1 2287183 2287923 R PFAM: class II aldolase/adducin family protein; KEGG: mlo:mlr6791 similar to adducins; class II aldolase/adducin family protein complement(2287183..2287923) Nocardioides sp. JS614 4599198 YP_923335.1 CDS Noca_2139 NC_008699.1 2287920 2288216 R hypothetical protein complement(2287920..2288216) Nocardioides sp. JS614 4599199 YP_923336.1 CDS Noca_2140 NC_008699.1 2288310 2289338 R catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase complement(2288310..2289338) Nocardioides sp. JS614 4599200 YP_923337.1 CDS Noca_2141 NC_008699.1 2289576 2290430 R PFAM: alpha/beta hydrolase fold; KEGG: rha:RHA1_ro04540 4,9-DSHA hydrolase; alpha/beta hydrolase fold protein complement(2289576..2290430) Nocardioides sp. JS614 4599201 YP_923338.1 CDS Noca_2142 NC_008699.1 2290521 2291579 R KEGG: rpb:RPB_1061 protocatechuate 4,5-dioxygenase; hypothetical protein complement(2290521..2291579) Nocardioides sp. JS614 4599202 YP_923339.1 CDS Noca_2143 NC_008699.1 2291785 2292429 D PFAM: regulatory protein, MarR; KEGG: mmc:Mmcs_5446 transcriptional regulator, MarR family; regulatory protein MarR 2291785..2292429 Nocardioides sp. JS614 4599203 YP_923340.1 CDS Noca_2144 NC_008699.1 2292774 2293619 R PFAM: amidohydrolase 2; KEGG: rba:RB9860 hypothetical protein; amidohydrolase 2 complement(2292774..2293619) Nocardioides sp. JS614 4599204 YP_923341.1 CDS Noca_2145 NC_008699.1 2293636 2294364 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tth:TTC0600 branched-chain amino acid transport ATP-binding protein livF; ABC transporter-like protein complement(2293636..2294364) Nocardioides sp. JS614 4599205 YP_923342.1 CDS Noca_2146 NC_008699.1 2294361 2296181 R PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: rpd:RPD_1891 ABC transporter related; ABC transporter-like protein complement(2294361..2296181) Nocardioides sp. JS614 4599206 YP_923343.1 CDS Noca_2147 NC_008699.1 2296178 2297050 R PFAM: inner-membrane translocator; KEGG: bbr:BB4292 branched-chain amino acid transport system permease; inner-membrane translocator complement(2296178..2297050) Nocardioides sp. JS614 4599207 YP_923344.1 CDS Noca_2148 NC_008699.1 2297087 2298259 R PFAM: Extracellular ligand-binding receptor; KEGG: gsu:GSU1734 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative; extracellular ligand-binding receptor complement(2297087..2298259) Nocardioides sp. JS614 4599208 YP_923345.1 CDS Noca_2149 NC_008699.1 2298450 2299478 R catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate; 4-hydroxy-2-ketovalerate aldolase complement(2298450..2299478) Nocardioides sp. JS614 4599209 YP_923346.1 CDS Noca_2150 NC_008699.1 2299475 2300419 R catalyzes the formation of acetyl-CoA from acetalaldehyde; acetaldehyde dehydrogenase complement(2299475..2300419) Nocardioides sp. JS614 4599210 YP_923347.1 CDS Noca_2151 NC_008699.1 2300416 2301231 R PFAM: Hydratase/decarboxylase; KEGG: rha:RHA1_ro08085 2-oxopent-4-enoate hydratase; 4-oxalocrotonate decarboxylase complement(2300416..2301231) Nocardioides sp. JS614 4599211 YP_923348.1 CDS Noca_2152 NC_008699.1 2301294 2302250 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rha:RHA1_ro04549 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2301294..2302250) Nocardioides sp. JS614 4599212 YP_923349.1 CDS Noca_2153 NC_008699.1 2302396 2302779 D PFAM: transposase IS3/IS911 family protein; KEGG: mmc:Mmcs_3190 transposase IS3/IS911; transposase IS3/IS911 family protein 2302396..2302779 Nocardioides sp. JS614 4599213 YP_923350.1 CDS Noca_2154 NC_008699.1 2302776 2303675 D PFAM: Integrase, catalytic region; KEGG: mmc:Mmcs_3191 integrase, catalytic region; integrase catalytic subunit 2302776..2303675 Nocardioides sp. JS614 4599214 YP_923351.1 CDS Noca_2155 NC_008699.1 2303931 2305286 R PFAM: FAD linked oxidase domain protein; KEGG: rha:RHA1_ro03236 probable D-lactate dehydrogenase (cytochrome); D-lactate dehydrogenase complement(2303931..2305286) Nocardioides sp. JS614 4599215 YP_923352.1 CDS Noca_2156 NC_008699.1 2305394 2306617 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rha:RHA1_ro02936 probable formyl-CoA transferase; L-carnitine dehydratase/bile acid-inducible protein F complement(2305394..2306617) Nocardioides sp. JS614 4599216 YP_923353.1 CDS Noca_2157 NC_008699.1 2306614 2307387 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(2306614..2307387) Nocardioides sp. JS614 4599217 YP_923354.1 CDS Noca_2158 NC_008699.1 2307387 2308535 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: nph:NP6182A predicted crotonobetainyl-CoA:carnitine CoA-transferase/alpha-methylacyl-CoA racemase 1; formyl-CoA transferase complement(2307387..2308535) Nocardioides sp. JS614 4599218 YP_923355.1 CDS Noca_2159 NC_008699.1 2308711 2309637 D PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: rpb:RPB_2122 3-hydroxyisobutyrate dehydrogenase; 3-hydroxyisobutyrate dehydrogenase 2308711..2309637 Nocardioides sp. JS614 4599219 YP_923356.1 CDS Noca_2160 NC_008699.1 2309634 2311124 D PFAM: aldehyde dehydrogenase; KEGG: rha:RHA1_ro05333 aldehyde dehydrogenase; betaine-aldehyde dehydrogenase 2309634..2311124 Nocardioides sp. JS614 4599220 YP_923357.1 CDS Noca_2161 NC_008699.1 2311697 2312212 R hypothetical protein complement(2311697..2312212) Nocardioides sp. JS614 4599221 YP_923358.1 CDS Noca_2162 NC_008699.1 2312250 2313428 R PFAM: cytochrome P450; KEGG: rha:RHA1_ro04669 cytochrome P450 CYP123; cytochrome P450 complement(2312250..2313428) Nocardioides sp. JS614 4599222 YP_923359.1 CDS Noca_2163 NC_008699.1 2313454 2316495 R PFAM: MMPL domain protein; KEGG: mmc:Mmcs_3114 transport protein; MMPL domain-containing protein complement(2313454..2316495) Nocardioides sp. JS614 4599223 YP_923360.1 CDS Noca_2164 NC_008699.1 2316611 2317240 D PFAM: regulatory protein, TetR; KEGG: sco:SCO3833 transcriptional regulator; regulatory protein TetR 2316611..2317240 Nocardioides sp. JS614 4599224 YP_923361.1 CDS Noca_2166 NC_008699.1 2318250 2318822 D PFAM: thioesterase superfamily protein; KEGG: nfa:pnf2350 hypothetical protein; thioesterase superfamily protein 2318250..2318822 Nocardioides sp. JS614 4599226 YP_923362.1 CDS Noca_2167 NC_008699.1 2318890 2319270 D KEGG: mmc:Mmcs_3184 hypothetical protein; hypothetical protein 2318890..2319270 Nocardioides sp. JS614 4599074 YP_923363.1 CDS Noca_2168 NC_008699.1 2319267 2320001 D KEGG: mmc:Mmcs_3184 hypothetical protein; hypothetical protein 2319267..2320001 Nocardioides sp. JS614 4599075 YP_923364.1 CDS Noca_2169 NC_008699.1 2320036 2321700 R TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV5831 multidrug-efflux transporter; EmrB/QacA family drug resistance transporter complement(2320036..2321700) Nocardioides sp. JS614 4599076 YP_923365.1 CDS Noca_2170 NC_008699.1 2321788 2322141 R hypothetical protein complement(2321788..2322141) Nocardioides sp. JS614 4599077 YP_923366.1 CDS Noca_2171 NC_008699.1 2322463 2322861 D PFAM: regulatory protein, MarR; KEGG: sco:SCO4961 MarR-family transcriptional regulator; regulatory protein MarR 2322463..2322861 Nocardioides sp. JS614 4599078 YP_923367.1 CDS Noca_2172 NC_008699.1 2324513 2326867 R PFAM: MMPL domain protein; KEGG: mmc:Mmcs_5142 MmpL; MMPL domain-containing protein complement(2324513..2326867) Nocardioides sp. JS614 4599079 YP_923368.1 CDS Noca_2173 NC_008699.1 2326903 2327505 R PFAM: regulatory protein, TetR; KEGG: rha:RHA1_ro04167 possible transcriptional regulator; regulatory protein TetR complement(2326903..2327505) Nocardioides sp. JS614 4599080 YP_923369.1 CDS Noca_2174 NC_008699.1 2327779 2328180 D PFAM: regulatory protein, MarR; KEGG: tfu:Tfu_0351 helix-turn-helix, fis-type; regulatory protein MarR 2327779..2328180 Nocardioides sp. JS614 4599081 YP_923370.1 CDS Noca_2175 NC_008699.1 2329133 2329987 R KEGG: fal:FRAAL0176 putative membrane transport protein; hypothetical protein complement(2329133..2329987) Nocardioides sp. JS614 4599082 YP_923371.1 CDS Noca_2176 NC_008699.1 2330165 2330542 D PFAM: helix-turn-helix domain protein; KEGG: rha:RHA1_ro11274 possible repressor protein, helix-turn-helix family; helix-turn-helix domain-containing protein 2330165..2330542 Nocardioides sp. JS614 4599083 YP_923372.1 CDS Noca_2177 NC_008699.1 2330663 2331265 R PFAM: GCN5-related N-acetyltransferase; KEGG: sma:SAV703 acetyltransferase; N-acetyltransferase GCN5 complement(2330663..2331265) Nocardioides sp. JS614 4599084 YP_923373.1 CDS Noca_2178 NC_008699.1 2331341 2332252 R PFAM: phage integrase family protein; KEGG: pfo:Pfl_1025 tyrosine recombinase XerD; phage integrase family protein complement(2331341..2332252) Nocardioides sp. JS614 4599085 YP_923374.1 CDS Noca_2179 NC_008699.1 2332508 2333248 D PFAM: GCN5-related N-acetyltransferase; KEGG: fra:Francci3_1395 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2332508..2333248 Nocardioides sp. JS614 4599086 YP_923375.1 CDS Noca_2180 NC_008699.1 2333642 2334109 R KEGG: sco:SCO0502 hypothetical protein; hypothetical protein complement(2333642..2334109) Nocardioides sp. JS614 4599087 YP_923376.1 CDS Noca_2181 NC_008699.1 2334239 2335093 R PFAM: NmrA family protein; KEGG: lxx:Lxx16700 hypothetical protein; NmrA family protein complement(2334239..2335093) Nocardioides sp. JS614 4599088 YP_923377.1 CDS Noca_2182 NC_008699.1 2335116 2335757 R PFAM: NmrA family protein; KEGG: ret:RHE_PC00048 hypothetical protein; NmrA family protein complement(2335116..2335757) Nocardioides sp. JS614 4599089 YP_923378.1 CDS Noca_2183 NC_008699.1 2335788 2336723 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: fra:Francci3_4105 alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase complement(2335788..2336723) Nocardioides sp. JS614 4599090 YP_923379.1 CDS Noca_2184 NC_008699.1 2336779 2337132 R KEGG: sco:SCO4433 integral membrane protein; integral membrane protein complement(2336779..2337132) Nocardioides sp. JS614 4599091 YP_923380.1 CDS Noca_2185 NC_008699.1 2337178 2338215 R PFAM: luciferase family protein; KEGG: bld:BLi00644 hypothetical protein; luciferase family protein complement(2337178..2338215) Nocardioides sp. JS614 4599092 YP_923381.1 CDS Noca_2186 NC_008699.1 2338217 2338930 R PFAM: regulatory protein, TetR; KEGG: fal:FRAAL3510 putative TetR-family transcriptional regulator (partial match); regulatory protein TetR complement(2338217..2338930) Nocardioides sp. JS614 4599093 YP_923382.1 CDS Noca_2187 NC_008699.1 2339053 2339835 D KEGG: fal:FRAAL6463 hypothetical protein; hypothetical protein 2339053..2339835 Nocardioides sp. JS614 4599094 YP_923383.1 CDS Noca_2188 NC_008699.1 2339832 2340425 D hypothetical protein 2339832..2340425 Nocardioides sp. JS614 4599095 YP_923384.1 CDS Noca_2189 NC_008699.1 2340554 2341225 R PFAM: RelA/SpoT domain protein; KEGG: lxx:Lxx23800 hypothetical protein; RelA/SpoT domain-containing protein complement(2340554..2341225) Nocardioides sp. JS614 4599096 YP_923385.1 CDS Noca_2191 NC_008699.1 2342167 2342799 R PFAM: 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: ret:RHE_PC00048 hypothetical protein; NmrA family protein complement(2342167..2342799) Nocardioides sp. JS614 4599098 YP_923386.1 CDS Noca_2192 NC_008699.1 2342932 2343378 R KEGG: sco:SCO5075 oxidoreductase; hypothetical protein complement(2342932..2343378) Nocardioides sp. JS614 4599099 YP_923387.1 CDS Noca_2193 NC_008699.1 2343424 2343795 R PFAM: DoxX family protein; KEGG: nfa:nfa22160 hypothetical protein; DoxX family protein complement(2343424..2343795) Nocardioides sp. JS614 4599100 YP_923388.1 CDS Noca_2194 NC_008699.1 2343927 2344583 D PFAM: regulatory protein, TetR; KEGG: fal:FRAAL3510 putative TetR-family transcriptional regulator (partial match); regulatory protein TetR 2343927..2344583 Nocardioides sp. JS614 4599101 YP_923389.1 CDS Noca_2195 NC_008699.1 2344926 2345567 R PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rxy:Rxyl_0122 methyltransferase type 11; phosphatidylethanolamine N-methyltransferase/phosphatidyl-N-methylethanolamine N-methyltransferase complement(2344926..2345567) Nocardioides sp. JS614 4599102 YP_923390.1 CDS Noca_2196 NC_008699.1 2345959 2346195 D hypothetical protein 2345959..2346195 Nocardioides sp. JS614 4599103 YP_923391.1 CDS Noca_2197 NC_008699.1 2346293 2347246 R PFAM: alkylmercury lyase; KEGG: nfa:pnf2590 putative alkylmercury lyase; alkylmercury lyase complement(2346293..2347246) Nocardioides sp. JS614 4599104 YP_923392.1 CDS Noca_2198 NC_008699.1 2347243 2347650 R PFAM: regulatory protein, MerR; KEGG: nfa:pnf2580 putative transcriptional regulator; MerR family transcriptional regulator complement(2347243..2347650) Nocardioides sp. JS614 4599105 YP_923393.1 CDS Noca_2199 NC_008699.1 2348173 2349003 R PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: tfu:Tfu_2703 putative cytochrome c biogenesis membrane protein; cytochrome c biogenesis protein, transmembrane region complement(2348173..2349003) Nocardioides sp. JS614 4599106 YP_923394.1 CDS Noca_2200 NC_008699.1 2349101 2350084 R PFAM: cytochrome c assembly protein; KEGG: fra:Francci3_0513 cytochrome c assembly protein; cytochrome c assembly protein complement(2349101..2350084) Nocardioides sp. JS614 4599107 YP_923395.1 CDS Noca_2201 NC_008699.1 2350081 2351679 R PFAM: ResB family protein; KEGG: sma:SAV4800 putative cytochrome c biogenesis membrane protein; ResB family protein complement(2350081..2351679) Nocardioides sp. JS614 4599108 YP_923396.1 CDS Noca_2202 NC_008699.1 2351676 2352260 R PFAM: Redoxin domain protein; KEGG: tfu:Tfu_2704 hypothetical protein; redoxin domain-containing protein complement(2351676..2352260) Nocardioides sp. JS614 4599109 YP_923397.1 CDS Noca_2203 NC_008699.1 2352387 2352998 D PFAM: Redoxin domain protein; Thioredoxin domain; KEGG: ttj:TTHA1728 cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE; redoxin domain-containing protein 2352387..2352998 Nocardioides sp. JS614 4599110 YP_923398.1 CDS Noca_2204 NC_008699.1 2353002 2354660 D TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: tfu:Tfu_1762 apolipoprotein N-acyltransferase; apolipoprotein N-acyltransferase 2353002..2354660 Nocardioides sp. JS614 4599111 YP_923399.1 CDS Noca_2205 NC_008699.1 2354750 2355346 R PFAM: cadmium resistance transporter; KEGG: nfa:pnf1360 putative transporter; cadmium resistance transporter complement(2354750..2355346) Nocardioides sp. JS614 4599112 YP_923400.1 CDS Noca_2206 NC_008699.1 2355476 2355997 R lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase complement(2355476..2355997) Nocardioides sp. JS614 4599113 YP_923401.1 CDS Noca_2207 NC_008699.1 2356042 2358012 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: nfa:pnf1330 putative cation-transporting ATPase; heavy metal translocating P-type ATPase complement(2356042..2358012) Nocardioides sp. JS614 4598705 YP_923402.1 CDS Noca_2208 NC_008699.1 2358009 2358323 R KEGG: nfa:pnf1320 putative transcriptional regulator; putative transcriptional regulator complement(2358009..2358323) Nocardioides sp. JS614 4598706 YP_923403.1 CDS Noca_2209 NC_008699.1 2358320 2358712 R PFAM: regulatory protein, ArsR; KEGG: nfa:pnf1320 putative transcriptional regulator; ArsR family transcriptional regulator complement(2358320..2358712) Nocardioides sp. JS614 4598707 YP_923404.1 CDS Noca_2210 NC_008699.1 2358811 2359422 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: shm:Shewmr7_2345 methyltransferase type 11; type 11 methyltransferase 2358811..2359422 Nocardioides sp. JS614 4598708 YP_923405.1 CDS Noca_2211 NC_008699.1 2359488 2360426 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV4541 putative ABC transporter ATP-binding protein; ABC transporter-like protein 2359488..2360426 Nocardioides sp. JS614 4598709 YP_923406.1 CDS Noca_2212 NC_008699.1 2360423 2362009 D KEGG: rha:RHA1_ro02954 possible ABC antibiotics transporter; putative ABC antibiotics transporter 2360423..2362009 Nocardioides sp. JS614 4598710 YP_923407.1 CDS Noca_2213 NC_008699.1 2362133 2362858 D PFAM: protein of unknown function DUF305; KEGG: ana:all7633 hypothetical protein; hypothetical protein 2362133..2362858 Nocardioides sp. JS614 4598711 YP_923408.1 CDS Noca_2214 NC_008699.1 2363221 2363721 R KEGG: pfl:PFL_2399 hypothetical protein; hypothetical protein complement(2363221..2363721) Nocardioides sp. JS614 4598712 YP_923409.1 CDS Noca_2215 NC_008699.1 2363803 2364138 D PFAM: regulatory protein, ArsR; KEGG: nfa:nfa26300 putative transcriptional regulator; ArsR family transcriptional regulator 2363803..2364138 Nocardioides sp. JS614 4598713 YP_923410.1 CDS Noca_2216 NC_008699.1 2364138 2365055 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: nfa:nfa52310 putative cation transporter; cation diffusion facilitator family transporter 2364138..2365055 Nocardioides sp. JS614 4598714 YP_923411.1 CDS Noca_2218 NC_008699.1 2365774 2366397 D hypothetical protein 2365774..2366397 Nocardioides sp. JS614 4598716 YP_923412.1 CDS Noca_2219 NC_008699.1 2366740 2367180 D PFAM: helix-turn-helix domain protein; KEGG: rha:RHA1_ro08679 possible repressor protein; helix-turn-helix domain-containing protein 2366740..2367180 Nocardioides sp. JS614 4598717 YP_923413.1 CDS Noca_2220 NC_008699.1 2367513 2368187 D PFAM: SAF domain; KEGG: rha:RHA1_ro10043 hypothetical protein; SAF domain-containing protein 2367513..2368187 Nocardioides sp. JS614 4598718 YP_923414.1 CDS Noca_2221 NC_008699.1 2368191 2369030 D KEGG: sma:SAV184 hypothetical protein; hypothetical protein 2368191..2369030 Nocardioides sp. JS614 4598719 YP_923415.1 CDS Noca_2222 NC_008699.1 2369027 2370706 D PFAM: type II secretion system protein E; KEGG: rha:RHA1_ro10045 possible type II/IV secretion system protein; type II secretion system protein E 2369027..2370706 Nocardioides sp. JS614 4598720 YP_923416.1 CDS Noca_2223 NC_008699.1 2370703 2371635 D PFAM: type II secretion system protein; KEGG: sma:SAV186 integral membrane protein; type II secretion system protein 2370703..2371635 Nocardioides sp. JS614 4598721 YP_923417.1 CDS Noca_2224 NC_008699.1 2371632 2372543 D PFAM: type II secretion system protein; KEGG: rha:RHA1_ro10047 hypothetical protein; type II secretion system protein 2371632..2372543 Nocardioides sp. JS614 4598722 YP_923418.1 CDS Noca_2225 NC_008699.1 2372618 2372821 D hypothetical protein 2372618..2372821 Nocardioides sp. JS614 4598723 YP_923419.1 CDS Noca_2226 NC_008699.1 2372828 2373223 D PFAM: TadE family protein; KEGG: sco:SCP1.173 hypothetical protein; TadE family protein 2372828..2373223 Nocardioides sp. JS614 4598724 YP_923420.1 CDS Noca_2227 NC_008699.1 2373220 2373678 D PFAM: TadE family protein; KEGG: sma:SAV190 hypothetical protein; TadE family protein 2373220..2373678 Nocardioides sp. JS614 4598725 YP_923421.1 CDS Noca_2228 NC_008699.1 2373675 2374127 D PFAM: TadE family protein; KEGG: sco:SCP1.175 hypothetical protein; TadE family protein 2373675..2374127 Nocardioides sp. JS614 4598726 YP_923422.1 CDS Noca_2229 NC_008699.1 2374124 2377384 D PFAM: Peptidoglycan-binding LysM; KEGG: sco:SCP1.176 putative large membrane protein; peptidoglycan-binding LysM 2374124..2377384 Nocardioides sp. JS614 4598727 YP_923423.1 CDS Noca_2230 NC_008699.1 2377407 2377682 D hypothetical protein 2377407..2377682 Nocardioides sp. JS614 4598728 YP_923424.1 CDS Noca_2231 NC_008699.1 2377679 2378245 D hypothetical protein 2377679..2378245 Nocardioides sp. JS614 4598729 YP_923425.1 CDS Noca_2232 NC_008699.1 2378239 2379138 D KEGG: sco:SCP1.166 putative atp/gtp-binding protein; putative atp/GTP-binding protein 2378239..2379138 Nocardioides sp. JS614 4598730 YP_923426.1 CDS Noca_2233 NC_008699.1 2379404 2380243 R hypothetical protein complement(2379404..2380243) Nocardioides sp. JS614 4598731 YP_923427.1 CDS Noca_2234 NC_008699.1 2380740 2381384 R hypothetical protein complement(2380740..2381384) Nocardioides sp. JS614 4598732 YP_923428.1 CDS Noca_2235 NC_008699.1 2381634 2382968 R PFAM: transposase IS116/IS110/IS902 family protein; KEGG: rha:RHA1_ro01400 probable transposase; transposase IS116/IS110/IS902 family protein complement(2381634..2382968) Nocardioides sp. JS614 4598733 YP_923429.1 CDS Noca_2237 NC_008699.1 2384514 2385362 D hypothetical protein 2384514..2385362 Nocardioides sp. JS614 4598735 YP_923430.1 CDS Noca_2238 NC_008699.1 2385402 2385695 D hypothetical protein 2385402..2385695 Nocardioides sp. JS614 4598736 YP_923431.1 CDS Noca_2239 NC_008699.1 2385695 2386561 D hypothetical protein 2385695..2386561 Nocardioides sp. JS614 4598737 YP_923432.1 CDS Noca_2240 NC_008699.1 2386561 2387337 D hypothetical protein 2386561..2387337 Nocardioides sp. JS614 4598738 YP_923433.1 CDS Noca_2241 NC_008699.1 2387334 2389304 D KEGG: sco:SCO6881 ATP-binding protein; hypothetical protein 2387334..2389304 Nocardioides sp. JS614 4598739 YP_923434.1 CDS Noca_2242 NC_008699.1 2389370 2390875 D KEGG: sco:SCO6880 lipoprotein; hypothetical protein 2389370..2390875 Nocardioides sp. JS614 4597788 YP_923435.1 CDS Noca_2243 NC_008699.1 2390875 2392413 D KEGG: sco:SCO6878 ATP-binding protein; ATP-binding protein 2390875..2392413 Nocardioides sp. JS614 4597789 YP_923436.1 CDS Noca_2244 NC_008699.1 2392442 2395588 D PFAM: peptidase M23B; KEGG: lxx:Lxx15390 lipoprotein; peptidase M23B 2392442..2395588 Nocardioides sp. JS614 4597790 YP_923437.1 CDS Noca_2245 NC_008699.1 2395666 2396268 D hypothetical protein 2395666..2396268 Nocardioides sp. JS614 4597791 YP_923438.1 CDS Noca_2246 NC_008699.1 2396507 2398027 D KEGG: fra:Francci3_2361 putative membrane protein; Type IV secretory pathway VirD4 components-like protein 2396507..2398027 Nocardioides sp. JS614 4597792 YP_923439.1 CDS Noca_2247 NC_008699.1 2398024 2398725 D hypothetical protein 2398024..2398725 Nocardioides sp. JS614 4597793 YP_923440.1 CDS Noca_2248 NC_008699.1 2398722 2399078 D hypothetical protein 2398722..2399078 Nocardioides sp. JS614 4597794 YP_923441.1 CDS Noca_2249 NC_008699.1 2399221 2400024 D PFAM: peptidase M48, Ste24p; KEGG: rfr:Rfer_1411 STE24 endopeptidase; peptidase M48, Ste24p 2399221..2400024 Nocardioides sp. JS614 4597795 YP_923442.1 CDS Noca_2250 NC_008699.1 2400492 2406422 R PFAM: TOPRIM domain protein; DNA primase catalytic core, N-terminal domain; SMART: Toprim sub domain protein; KEGG: mmc:Mmcs_1430 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member-like protein; DNA primase catalytic core complement(2400492..2406422) Nocardioides sp. JS614 4597796 YP_923443.1 CDS Noca_2251 NC_008699.1 2406697 2407122 D hypothetical protein 2406697..2407122 Nocardioides sp. JS614 4597797 YP_923444.1 CDS Noca_2252 NC_008699.1 2407103 2407630 D hypothetical protein 2407103..2407630 Nocardioides sp. JS614 4597798 YP_923445.1 CDS Noca_2253 NC_008699.1 2407692 2407922 R hypothetical protein complement(2407692..2407922) Nocardioides sp. JS614 4597799 YP_923446.1 CDS Noca_2254 NC_008699.1 2408037 2408288 R hypothetical protein complement(2408037..2408288) Nocardioides sp. JS614 4597800 YP_923447.1 CDS Noca_2255 NC_008699.1 2408285 2408581 R hypothetical protein complement(2408285..2408581) Nocardioides sp. JS614 4597801 YP_923448.1 CDS Noca_2256 NC_008699.1 2408578 2408817 R hypothetical protein complement(2408578..2408817) Nocardioides sp. JS614 4597802 YP_923449.1 CDS Noca_2257 NC_008699.1 2408814 2409110 R hypothetical protein complement(2408814..2409110) Nocardioides sp. JS614 4597803 YP_923450.1 CDS Noca_2258 NC_008699.1 2409187 2410191 R KEGG: sco:SCP1.352 hypothetical protein; hypothetical protein complement(2409187..2410191) Nocardioides sp. JS614 4597804 YP_923451.1 CDS Noca_2259 NC_008699.1 2410307 2411887 R PFAM: ParB domain protein nuclease; KEGG: rha:RHA1_ro03182 possible chromosome partitioning protein-like protein; nuclease complement(2410307..2411887) Nocardioides sp. JS614 4597805 YP_923452.1 CDS Noca_2260 NC_008699.1 2412199 2412654 D hypothetical protein 2412199..2412654 Nocardioides sp. JS614 4597806 YP_923453.1 CDS Noca_2261 NC_008699.1 2412840 2413304 D hypothetical protein 2412840..2413304 Nocardioides sp. JS614 4597807 YP_923454.1 CDS Noca_2262 NC_008699.1 2413381 2413770 D PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: mle:ML2684 single strand binding protein; single-strand binding protein/primosomal replication protein n 2413381..2413770 Nocardioides sp. JS614 4597808 YP_923455.1 CDS Noca_2263 NC_008699.1 2414144 2414776 R hypothetical protein complement(2414144..2414776) Nocardioides sp. JS614 4597809 YP_923456.1 CDS Noca_2264 NC_008699.1 2414985 2417378 R PFAM: phage integrase family protein; KEGG: rha:RHA1_ro10276 possible DNA integrase/recombinase; phage integrase family protein complement(2414985..2417378) Nocardioides sp. JS614 4597810 YP_923457.1 CDS Noca_2265 NC_008699.1 2417387 2418622 R PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: fra:Francci3_3532 phage integrase; phage integrase family protein complement(2417387..2418622) Nocardioides sp. JS614 4597811 YP_923458.1 CDS Noca_2266 NC_008699.1 2418722 2419663 D KEGG: tfu:Tfu_2217 hypothetical protein; hypothetical protein 2418722..2419663 Nocardioides sp. JS614 4597812 YP_923459.1 CDS Noca_2267 NC_008699.1 2419678 2419842 D hypothetical protein 2419678..2419842 Nocardioides sp. JS614 4597813 YP_923460.1 CDS Noca_2268 NC_008699.1 2419839 2420888 D TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: sma:SAV2631 putative DNA processing Smf-family protein; DNA protecting protein DprA 2419839..2420888 Nocardioides sp. JS614 4597814 YP_923461.1 CDS Noca_2269 NC_008699.1 2421131 2421400 R hypothetical protein complement(2421131..2421400) Nocardioides sp. JS614 4597815 YP_923462.1 CDS Noca_2270 NC_008699.1 2421397 2421699 R hypothetical protein complement(2421397..2421699) Nocardioides sp. JS614 4597816 YP_923463.1 CDS Noca_2271 NC_008699.1 2421762 2422718 D PFAM: ATP dependent DNA ligase; KEGG: sma:SAP1p90 putative ATP-dependint DNA ligase; ATP dependent DNA ligase 2421762..2422718 Nocardioides sp. JS614 4597817 YP_923464.1 CDS Noca_2272 NC_008699.1 2422685 2422954 R hypothetical protein complement(2422685..2422954) Nocardioides sp. JS614 4597818 YP_923465.1 CDS Noca_2273 NC_008699.1 2423399 2424178 D hypothetical protein 2423399..2424178 Nocardioides sp. JS614 4597819 YP_923466.1 CDS Noca_2274 NC_008699.1 2424175 2424861 D hypothetical protein 2424175..2424861 Nocardioides sp. JS614 4597820 YP_923467.1 CDS Noca_2275 NC_008699.1 2425190 2425639 D hypothetical protein 2425190..2425639 Nocardioides sp. JS614 4597821 YP_923468.1 CDS Noca_2276 NC_008699.1 2425729 2426367 D KEGG: sma:SAV5827 secreted protein; secreted protein 2425729..2426367 Nocardioides sp. JS614 4597822 YP_923469.1 CDS Noca_2277 NC_008699.1 2426480 2426695 R hypothetical protein complement(2426480..2426695) Nocardioides sp. JS614 4597823 YP_923470.1 CDS Noca_2278 NC_008699.1 2426863 2428284 R PFAM: sigma-70 region 4 domain protein; KEGG: sme:SMc03873 putative RNA polymerase sigma factor protein; sigma-70 region 4 domain-containing protein complement(2426863..2428284) Nocardioides sp. JS614 4597824 YP_923471.1 CDS Noca_2279 NC_008699.1 2428320 2428898 R hypothetical protein complement(2428320..2428898) Nocardioides sp. JS614 4597825 YP_923472.1 CDS Noca_2280 NC_008699.1 2428895 2430571 R PFAM: helicase domain protein; type III restriction enzyme, res subunit; restriction endonuclease; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sus:Acid_1698 type III restriction enzyme, res subunit; type III restriction enzyme, res subunit complement(2428895..2430571) Nocardioides sp. JS614 4597826 YP_923473.1 CDS Noca_2281 NC_008699.1 2430568 2432910 R KEGG: sus:Acid_1699 zinc finger, RanBP2-type; hypothetical protein complement(2430568..2432910) Nocardioides sp. JS614 4597827 YP_923474.1 CDS Noca_2282 NC_008699.1 2432927 2433286 R hypothetical protein complement(2432927..2433286) Nocardioides sp. JS614 4595830 YP_923475.1 CDS Noca_2283 NC_008699.1 2433283 2433744 R PFAM: DNA mismatch endonuclease vsr; KEGG: hch:HCH_10021 DNA G:T-mismatch repair endonuclease; T/G mismatch-specific endonuclease complement(2433283..2433744) Nocardioides sp. JS614 4595831 YP_923476.1 CDS Noca_2284 NC_008699.1 2433741 2434940 R KEGG: ngo:NGO1209 DNA cytosine methyltransferase M.NgoMIII; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; DNA-cytosine methyltransferase complement(2433741..2434940) Nocardioides sp. JS614 4595832 YP_923477.1 CDS Noca_2285 NC_008699.1 2435055 2435384 R hypothetical protein complement(2435055..2435384) Nocardioides sp. JS614 4595833 YP_923478.1 CDS Noca_2286 NC_008699.1 2435571 2437094 R hypothetical protein complement(2435571..2437094) Nocardioides sp. JS614 4595834 YP_923479.1 CDS Noca_2287 NC_008699.1 2437084 2437449 R hypothetical protein complement(2437084..2437449) Nocardioides sp. JS614 4595835 YP_923480.1 CDS Noca_2288 NC_008699.1 2437666 2438535 D KEGG: nfa:nfa9160 hypothetical protein; hypothetical protein 2437666..2438535 Nocardioides sp. JS614 4595836 YP_923481.1 CDS Noca_2289 NC_008699.1 2439582 2440298 R hypothetical protein complement(2439582..2440298) Nocardioides sp. JS614 4595837 YP_923482.1 CDS Noca_2290 NC_008699.1 2440583 2441125 R hypothetical protein complement(2440583..2441125) Nocardioides sp. JS614 4595838 YP_923483.1 CDS Noca_2291 NC_008699.1 2441485 2442834 R KEGG: lxx:Lxx13850 hypothetical protein; hypothetical protein complement(2441485..2442834) Nocardioides sp. JS614 4595839 YP_923484.1 CDS Noca_2292 NC_008699.1 2442896 2443246 R hypothetical protein complement(2442896..2443246) Nocardioides sp. JS614 4595840 YP_923485.1 CDS Noca_2293 NC_008699.1 2443413 2444600 R PFAM: phage integrase family protein; KEGG: sco:SCO5633 traSA:integrase fusion protein; phage integrase family protein complement(2443413..2444600) Nocardioides sp. JS614 4595841 YP_923486.1 CDS Noca_2294 NC_008699.1 2444706 2444981 R KEGG: fra:Francci3_3400 excisionase/Xis, DNA-binding; hypothetical protein complement(2444706..2444981) Nocardioides sp. JS614 4595842 YP_923487.1 CDS Noca_2295 NC_008699.1 2445371 2446795 R KEGG: pac:PPA0671 glutamine synthetase; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp; L-glutamine synthetase complement(2445371..2446795) Nocardioides sp. JS614 4595843 YP_923488.1 CDS Noca_2296 NC_008699.1 2446944 2447396 D PFAM: RDD domain containing protein; KEGG: pac:PPA0672 hypothetical protein; RDD domain-containing protein 2446944..2447396 Nocardioides sp. JS614 4595844 YP_923489.1 CDS Noca_2297 NC_008699.1 2447417 2448319 D hypothetical protein 2447417..2448319 Nocardioides sp. JS614 4595845 YP_923490.1 CDS Noca_2298 NC_008699.1 2448325 2449041 R KEGG: pac:PPA0683 hypothetical protein; hypothetical protein complement(2448325..2449041) Nocardioides sp. JS614 4595846 YP_923491.1 CDS Noca_2299 NC_008699.1 2449078 2450028 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(2449078..2450028) Nocardioides sp. JS614 4595847 YP_923492.1 CDS Noca_2300 NC_008699.1 2450068 2450775 R TIGRFAM: lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; KEGG: rha:RHA1_ro01153 probable lipoyltransferase; lipoate-protein ligase B complement(2450068..2450775) Nocardioides sp. JS614 4595848 YP_923493.1 CDS Noca_2301 NC_008699.1 2450954 2451346 D hypothetical protein 2450954..2451346 Nocardioides sp. JS614 4595916 YP_923494.1 CDS Noca_2302 NC_008699.1 2451292 2452188 R PFAM: dihydrodipicolinate reductase; NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; KEGG: nfa:nfa16890 putative epimerase; NAD-dependent epimerase/dehydratase complement(2451292..2452188) Nocardioides sp. JS614 4595917 YP_923495.1 CDS Noca_2303 NC_008699.1 2452196 2453989 R PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: rha:RHA1_ro01151 probable dihydrolipoyllysine-residue succinyltransferase; 2-oxoglutarate dehydrogenase E2 component complement(2452196..2453989) Nocardioides sp. JS614 4595918 YP_923496.1 CDS Noca_2304 NC_008699.1 2454025 2455404 R E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(2454025..2455404) Nocardioides sp. JS614 4595919 YP_923497.1 CDS Noca_2305 NC_008699.1 2455471 2455920 D KEGG: mmc:Mmcs_3312 hypothetical protein; hypothetical protein 2455471..2455920 Nocardioides sp. JS614 4595920 YP_923498.1 CDS Noca_2306 NC_008699.1 2455931 2457424 R PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: sco:SCO2179 putative aminopeptidase; leucyl aminopeptidase complement(2455931..2457424) Nocardioides sp. JS614 4595921 YP_923499.1 CDS gcvT NC_008699.1 2457481 2458596 D catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 2457481..2458596 Nocardioides sp. JS614 4595922 YP_923500.1 CDS Noca_2308 NC_008699.1 2458598 2458858 D KEGG: sco:SCO2172 hypothetical protein; hypothetical protein 2458598..2458858 Nocardioides sp. JS614 4595923 YP_923501.1 CDS Noca_2309 NC_008699.1 2458905 2460452 D hypothetical protein 2458905..2460452 Nocardioides sp. JS614 4595924 YP_923502.1 CDS Noca_2310 NC_008699.1 2460477 2461298 D TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: pst:PSPTO_2623 phenazine biosynthesis protein, PhzF family; PhzF family phenazine biosynthesis protein 2460477..2461298 Nocardioides sp. JS614 4595925 YP_923503.1 CDS Noca_2311 NC_008699.1 2461315 2462136 D PFAM: thymidylate synthase; KEGG: csa:Csal_2572 thymidylate synthase; thymidylate synthase 2461315..2462136 Nocardioides sp. JS614 4595926 YP_923504.1 CDS Noca_2312 NC_008699.1 2462156 2462638 D PFAM: dihydrofolate reductase region; KEGG: tbd:Tbd_2039 dihydrofolate reductase; dihydrofolate reductase 2462156..2462638 Nocardioides sp. JS614 4595927 YP_923505.1 CDS Noca_2313 NC_008699.1 2462625 2463575 D PFAM: luciferase family protein; KEGG: rha:RHA1_ro04019 probable alkanesulfonate monooxygenase; luciferase family protein 2462625..2463575 Nocardioides sp. JS614 4595928 YP_923506.1 CDS Noca_2314 NC_008699.1 2463600 2464112 R KEGG: tfu:Tfu_3023 similar to flavodoxin; flavodoxin-like complement(2463600..2464112) Nocardioides sp. JS614 4595929 YP_923507.1 CDS Noca_2315 NC_008699.1 2464225 2465121 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 2464225..2465121 Nocardioides sp. JS614 4595930 YP_923508.1 CDS Noca_2316 NC_008699.1 2465130 2466815 D PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: sco:SCO5745 hypothetical protein; beta-lactamase domain-containing protein 2465130..2466815 Nocardioides sp. JS614 4595931 YP_923509.1 CDS Noca_2317 NC_008699.1 2467281 2469917 D PFAM: cell divisionFtsK/SpoIIIE; KEGG: pac:PPA1356 FtsK/SpoIIIE protein; cell division protein FtsK 2467281..2469917 Nocardioides sp. JS614 4595932 YP_923510.1 CDS Noca_2318 NC_008699.1 2469914 2471611 D KEGG: sma:SAV2509 hypothetical protein; hypothetical protein 2469914..2471611 Nocardioides sp. JS614 4595933 YP_923511.1 CDS Noca_2319 NC_008699.1 2471669 2473111 D KEGG: sma:SAV2508 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme YliG; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004-like; SMART: Elongator protein 3/MiaB/NifB; MiaB-like tRNA modifying enzyme YliG 2471669..2473111 Nocardioides sp. JS614 4595934 YP_923512.1 CDS Noca_2320 NC_008699.1 2473146 2473754 D TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: pac:PPA1007 phosphatidylglycerophosphate synthase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2473146..2473754 Nocardioides sp. JS614 4595935 YP_923513.1 CDS Noca_2321 NC_008699.1 2473831 2476026 D PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: cgb:cg0397 probable 5'-nucleotidase precursor; 5'-nucleotidase domain-containing protein 2473831..2476026 Nocardioides sp. JS614 4595936 YP_923514.1 CDS Noca_2322 NC_008699.1 2476104 2478893 D PFAM: Endonuclease/exonuclease/phosphatase; KEGG: cjk:jk1043 putative extracellular nuclease; endonuclease/exonuclease/phosphatase 2476104..2478893 Nocardioides sp. JS614 4595937 YP_923515.1 CDS Noca_2323 NC_008699.1 2478930 2480699 R PFAM: glycoside hydrolase 15-related; KEGG: lxx:Lxx13300 hypothetical protein; glycoside hydrolase 15-like protein complement(2478930..2480699) Nocardioides sp. JS614 4595938 YP_923516.1 CDS Noca_2324 NC_008699.1 2480718 2481224 D PFAM: CinA domain protein; KEGG: fal:FRAAL5732 competence-inducible (CinA-like) protein; competence/damage-inducible protein cinA 2480718..2481224 Nocardioides sp. JS614 4595939 YP_923517.1 CDS Noca_2325 NC_008699.1 2481259 2481528 D PFAM: helix-turn-helix domain protein; KEGG: tfu:Tfu_0798 helix-turn-helix motif; helix-turn-helix domain-containing protein 2481259..2481528 Nocardioides sp. JS614 4595940 YP_923518.1 CDS Noca_2326 NC_008699.1 2481573 2481827 D hypothetical protein 2481573..2481827 Nocardioides sp. JS614 4595941 YP_923519.1 CDS Noca_2327 NC_008699.1 2481827 2482039 D hypothetical protein 2481827..2482039 Nocardioides sp. JS614 4595942 YP_923520.1 CDS Noca_2328 NC_008699.1 2482043 2482849 R PFAM: Formamidopyrimidine-DNA glycolase; KEGG: mpa:MAP3416 probable endonuclease VIII; formamidopyrimidine-DNA glycosylase complement(2482043..2482849) Nocardioides sp. JS614 4595943 YP_923521.1 CDS Noca_2329 NC_008699.1 2482842 2487392 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicases-like; KEGG: fra:Francci3_3527 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase complement(2482842..2487392) Nocardioides sp. JS614 4595944 YP_923522.1 CDS Noca_2330 NC_008699.1 2487558 2488073 R hypothetical protein complement(2487558..2488073) Nocardioides sp. JS614 4595945 YP_923523.1 CDS Noca_2331 NC_008699.1 2488319 2488678 D KEGG: nfa:nfa50720 hypothetical protein; hypothetical protein 2488319..2488678 Nocardioides sp. JS614 4595946 YP_923524.1 CDS Noca_2332 NC_008699.1 2488770 2489339 D PFAM: regulatory protein, TetR; KEGG: rha:RHA1_ro06052 possible transcriptional regulator; regulatory protein TetR 2488770..2489339 Nocardioides sp. JS614 4595947 YP_923525.1 CDS Noca_2333 NC_008699.1 2489563 2490825 R KEGG: sma:SAV5428 hypothetical protein; hypothetical protein complement(2489563..2490825) Nocardioides sp. JS614 4595948 YP_923526.1 CDS Noca_2334 NC_008699.1 2490886 2491992 D PFAM: protein of unknown function DUF1006; KEGG: mlo:mlr1373 hypothetical protein; hypothetical protein 2490886..2491992 Nocardioides sp. JS614 4595949 YP_923527.1 CDS Noca_2335 NC_008699.1 2491989 2492372 R PFAM: Endoribonuclease L-PSP; KEGG: fra:Francci3_4440 endoribonuclease L-PSP; endoribonuclease L-PSP complement(2491989..2492372) Nocardioides sp. JS614 4595950 YP_923528.1 CDS Noca_2336 NC_008699.1 2492399 2492833 R KEGG: rha:RHA1_ro05054 hypothetical protein; hypothetical protein complement(2492399..2492833) Nocardioides sp. JS614 4595951 YP_923529.1 CDS Noca_2337 NC_008699.1 2492958 2494280 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rha:RHA1_ro01206 hypothetical protein; type 12 methyltransferase 2492958..2494280 Nocardioides sp. JS614 4595952 YP_923530.1 CDS Noca_2338 NC_008699.1 2494288 2494482 D KEGG: sma:SAV2495 hypothetical protein; hypothetical protein 2494288..2494482 Nocardioides sp. JS614 4595953 YP_923531.1 CDS Noca_2339 NC_008699.1 2494487 2495752 D PFAM: major facilitator superfamily MFS_1; KEGG: nfa:nfa33380 putative transporter; major facilitator transporter 2494487..2495752 Nocardioides sp. JS614 4595954 YP_923532.1 CDS Noca_2340 NC_008699.1 2495749 2496543 D KEGG: rha:RHA1_ro04261 probable S-methyl-5-thioadenosine phosphorylase; TIGRFAM: methylthioadenosine phosphorylase; PFAM: purine phosphorylase, family 2; methylthioadenosine phosphorylase 2495749..2496543 Nocardioides sp. JS614 4595955 YP_923533.1 CDS Noca_2341 NC_008699.1 2496738 2497790 D KEGG: fra:Francci3_3525 RecA protein; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase; recA protein 2496738..2497790 Nocardioides sp. JS614 4595956 YP_923534.1 CDS Noca_2342 NC_008699.1 2497774 2498382 D PFAM: regulatory protein RecX; KEGG: sma:SAV2491 putative RecX protein; regulatory protein RecX 2497774..2498382 Nocardioides sp. JS614 4595957 YP_923535.1 CDS Noca_2343 NC_008699.1 2498372 2498863 D PFAM: phosphoribosyltransferase; KEGG: cgb:cg1659 purine phosphoribosyltransferase; phosphoribosyltransferase 2498372..2498863 Nocardioides sp. JS614 4595958 YP_923536.1 CDS Noca_2344 NC_008699.1 2498860 2499564 D PFAM: GCN5-related N-acetyltransferase; KEGG: sth:STH2617 aminoglycoside 6'-N-acetyltransferase; N-acetyltransferase GCN5 2498860..2499564 Nocardioides sp. JS614 4595959 YP_923537.1 CDS Noca_2345 NC_008699.1 2499572 2500423 D PFAM: protein of unknown function DUF344; KEGG: mmc:Mmcs_0639 protein of unknown function DUF344; hypothetical protein 2499572..2500423 Nocardioides sp. JS614 4595960 YP_923538.1 CDS Noca_2346 NC_008699.1 2500420 2501199 D KEGG: rxy:Rxyl_2213 hypothetical protein; hypothetical protein 2500420..2501199 Nocardioides sp. JS614 4595961 YP_923539.1 CDS Noca_2347 NC_008699.1 2501196 2501588 D KEGG: sco:SCO1348 hypothetical protein; hypothetical protein 2501196..2501588 Nocardioides sp. JS614 4595962 YP_923540.1 CDS Noca_2348 NC_008699.1 2501590 2502333 R PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: sco:SCO6093 secreted protein; cobalamin (vitamin B12) biosynthesis CbiX protein complement(2501590..2502333) Nocardioides sp. JS614 4595963 YP_923541.1 CDS Noca_2349 NC_008699.1 2502437 2503183 R catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase complement(2502437..2503183) Nocardioides sp. JS614 4595964 YP_923542.1 CDS Noca_2350 NC_008699.1 2503180 2503377 R KEGG: sma:SAV2128 hypothetical protein; hypothetical protein complement(2503180..2503377) Nocardioides sp. JS614 4595965 YP_923543.1 CDS Noca_2351 NC_008699.1 2503374 2505095 R PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: sco:SCO6102 putative nitrite/sulphite reductase; ferredoxin--nitrite reductase complement(2503374..2505095) Nocardioides sp. JS614 4595966 YP_923544.1 CDS glyA NC_008699.1 2505447 2506895 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 2505447..2506895 Nocardioides sp. JS614 4595967 YP_923545.1 CDS Noca_2353 NC_008699.1 2506913 2508586 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: sma:SAV2123 putative acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(2506913..2508586) Nocardioides sp. JS614 4595968 YP_923546.1 CDS Noca_2354 NC_008699.1 2508604 2509587 D PFAM: ribonuclease BN; KEGG: sma:SAV2122 integral membrane protein, ribonuclease BN-like family; ribonuclease BN 2508604..2509587 Nocardioides sp. JS614 4595969 YP_923547.1 CDS Noca_2355 NC_008699.1 2509598 2510698 D PFAM: TrkA-N domain protein; Ion transport 2 domain protein,; KEGG: pac:PPA1165 ion channel membrane protein; TrkA domain-containing protein 2509598..2510698 Nocardioides sp. JS614 4595970 YP_923548.1 CDS Noca_2356 NC_008699.1 2510784 2512790 D TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: dra:DR2419 sensory box sensor histidine kinase; PAS sensor protein 2510784..2512790 Nocardioides sp. JS614 4595971 YP_923549.1 CDS Noca_2357 NC_008699.1 2513242 2513541 D hypothetical protein 2513242..2513541 Nocardioides sp. JS614 4595972 YP_923550.1 CDS Noca_2358 NC_008699.1 2513583 2515217 R unknown function; putative glutamate synthase (NADPH) small subunit complement(2513583..2515217) Nocardioides sp. JS614 4595973 YP_923551.1 CDS Noca_2359 NC_008699.1 2515219 2516223 R PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; KEGG: rfr:Rfer_2185 thiamine pyrophosphate enzyme-like TPP-binding; pyruvate ferredoxin oxidoreductase subunit beta complement(2515219..2516223) Nocardioides sp. JS614 4595974 YP_923552.1 CDS Noca_2360 NC_008699.1 2516220 2517425 R PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: rfr:Rfer_2186 pyruvate flavodoxin/ferredoxin oxidoreductase-like; pyruvate ferredoxin oxidoreductase subunit alpha complement(2516220..2517425) Nocardioides sp. JS614 4595975 YP_923553.1 CDS Noca_2361 NC_008699.1 2517418 2517990 R TIGRFAM: pyruvate/ketoisovalerate oxidoreductase, gamma subunit; PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: rfr:Rfer_2187 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate; pyruvate ferredoxin oxidoreductase subunit gamma complement(2517418..2517990) Nocardioides sp. JS614 4595976 YP_923554.1 CDS Noca_2362 NC_008699.1 2518163 2518804 D KEGG: rha:RHA1_ro08278 hypothetical protein; hypothetical protein 2518163..2518804 Nocardioides sp. JS614 4595977 YP_923555.1 CDS Noca_2363 NC_008699.1 2518792 2519856 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: mmc:Mmcs_3405 alcohol dehydrogenase GroES-like protein; alcohol dehydrogenase complement(2518792..2519856) Nocardioides sp. JS614 4595978 YP_923556.1 CDS Noca_2364 NC_008699.1 2520113 2520457 D PFAM: helix-turn-helix domain protein; KEGG: plu:plu2127 hypothetical protein; XRE family transcriptional regulator 2520113..2520457 Nocardioides sp. JS614 4595979 YP_923557.1 CDS Noca_2365 NC_008699.1 2520447 2521682 D PFAM: HipA domain protein; KEGG: noc:Noca_2931 hypothetical protein; HipA domain-containing protein 2520447..2521682 Nocardioides sp. JS614 4595980 YP_923558.1 CDS Noca_2366 NC_008699.1 2521860 2523098 R PFAM: transposase IS116/IS110/IS902 family protein; KEGG: rha:RHA1_ro01400 probable transposase; transposase IS116/IS110/IS902 family protein complement(2521860..2523098) Nocardioides sp. JS614 4595981 YP_923559.1 CDS Noca_2367 NC_008699.1 2523835 2524659 D PFAM: aminotransferase, class IV; KEGG: sco:SCO1546 putative aminotransferase; class IV aminotransferase 2523835..2524659 Nocardioides sp. JS614 4595985 YP_923560.1 CDS Noca_2368 NC_008699.1 2524645 2525001 R PFAM: sporulation and cell division protein SsgA; KEGG: fra:Francci3_1359 sporulation and cell division protein SsgA; sporulation and cell division protein SsgA complement(2524645..2525001) Nocardioides sp. JS614 4595986 YP_923561.1 CDS Noca_2369 NC_008699.1 2525401 2525676 R hypothetical protein complement(2525401..2525676) Nocardioides sp. JS614 4599469 YP_923562.1 CDS thrS NC_008699.1 2525866 2527872 D catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 2525866..2527872 Nocardioides sp. JS614 4599470 YP_923563.1 CDS Noca_2371 NC_008699.1 2527883 2528368 R PFAM: GCN5-related N-acetyltransferase; KEGG: ccr:CC0816 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(2527883..2528368) Nocardioides sp. JS614 4599471 YP_923564.1 CDS Noca_2372 NC_008699.1 2528392 2528916 D PFAM: histidine triad (HIT) protein; KEGG: nfa:nfa37110 hypothetical protein; histidine triad (HIT) protein 2528392..2528916 Nocardioides sp. JS614 4599472 YP_923565.1 CDS Noca_2373 NC_008699.1 2528913 2529692 D PFAM: inositol monophosphatase; KEGG: cef:CE0810 hypothetical protein; inositol monophosphatase 2528913..2529692 Nocardioides sp. JS614 4599473 YP_923566.1 CDS Noca_2374 NC_008699.1 2529785 2530405 D KEGG: rha:RHA1_ro07061 hypothetical protein; hypothetical protein 2529785..2530405 Nocardioides sp. JS614 4599474 YP_923567.1 CDS Noca_2375 NC_008699.1 2530430 2531593 R catalyzes the interconversion of D-xylose to D-xylulose; xylose isomerase complement(2530430..2531593) Nocardioides sp. JS614 4599475 YP_923568.1 CDS Noca_2376 NC_008699.1 2532004 2533134 D PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sma:SAV2247 putative periplasmic solute-binding protein; periplasmic binding protein/LacI transcriptional regulator 2532004..2533134 Nocardioides sp. JS614 4599476 YP_923569.1 CDS Noca_2377 NC_008699.1 2533226 2533984 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO6010 probable ABC-transport system ATP binding protein; ABC transporter-like protein 2533226..2533984 Nocardioides sp. JS614 4599477 YP_923570.1 CDS Noca_2378 NC_008699.1 2533981 2535240 D PFAM: inner-membrane translocator; KEGG: tfu:Tfu_1920 putative ABC transporter transmembrane transport protein; inner-membrane translocator 2533981..2535240 Nocardioides sp. JS614 4599478 YP_923571.1 CDS Noca_2379 NC_008699.1 2535246 2536433 D PFAM: ROK family protein; KEGG: sma:SAV7180 xylose repressor, ROK-family transcriptional regulator; ROK family protein 2535246..2536433 Nocardioides sp. JS614 4599479 YP_923572.1 CDS Noca_2380 NC_008699.1 2536464 2537084 D PFAM: CDP-alcohol phosphatidyltransferase; KEGG: sma:SAV6826 putative membrane transferase; CDP-diacylglycerol inositol 3-phosphatidyltransferase 2536464..2537084 Nocardioides sp. JS614 4599480 YP_923573.1 CDS Noca_2381 NC_008699.1 2537088 2538017 D with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate; pyridoxal biosynthesis lyase PdxS 2537088..2538017 Nocardioides sp. JS614 4599481 YP_923574.1 CDS Noca_2382 NC_008699.1 2538014 2538619 D PFAM: SNO glutamine amidotransferase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: tfu:Tfu_2097 putative glutamine amidotransferase; SNO glutamine amidotransferase 2538014..2538619 Nocardioides sp. JS614 4599482 YP_923575.1 CDS Noca_2383 NC_008699.1 2538629 2539408 D PFAM: protein of unknown function DUF28; KEGG: sco:SCO1521 hypothetical protein; hypothetical protein 2538629..2539408 Nocardioides sp. JS614 4599483 YP_923576.1 CDS Noca_2384 NC_008699.1 2539517 2540512 R KEGG: rha:RHA1_ro05202 hypothetical protein; hypothetical protein complement(2539517..2540512) Nocardioides sp. JS614 4599484 YP_923577.1 CDS Noca_2385 NC_008699.1 2540828 2541361 D TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; KEGG: sma:SAV6833 putative Holliday junction nuclease; Holliday junction endonuclease RuvC 2540828..2541361 Nocardioides sp. JS614 4599485 YP_923578.1 CDS Noca_2386 NC_008699.1 2541358 2541960 D PFAM: RuvA domain protein; DNA recombination protein RuvA, domain I; SMART: Helix-hairpin-helix DNA-binding, class 1; KEGG: sco:SCO1519 holliday junction DNA helicase; Holliday junction DNA helicase subunit RuvA 2541358..2541960 Nocardioides sp. JS614 4599486 YP_923579.1 CDS ruvB NC_008699.1 2541965 2543047 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 2541965..2543047 Nocardioides sp. JS614 4599487 YP_923580.1 CDS Noca_2388 NC_008699.1 2543213 2543524 D TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: ccr:CC1992 preprotein translocase, YajC subunit; protein translocase subunit yajC 2543213..2543524 Nocardioides sp. JS614 4599488 YP_923581.1 CDS secD NC_008699.1 2543526 2545220 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 2543526..2545220 Nocardioides sp. JS614 4599489 YP_923582.1 CDS Noca_2390 NC_008699.1 2545220 2546458 D TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: sma:SAV6838 putative protein-export membrane protein; protein translocase subunit secF 2545220..2546458 Nocardioides sp. JS614 4599490 YP_923583.1 CDS Noca_2391 NC_008699.1 2546455 2547012 D KEGG: tfu:Tfu_2091 adenine phosphoribosyltransferase; TIGRFAM: adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; adenine phosphoribosyltransferase 2546455..2547012 Nocardioides sp. JS614 4599491 YP_923584.1 CDS Noca_2392 NC_008699.1 2547105 2549336 D KEGG: sma:SAV6840 putative ppGpp synthetase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region; RelA/SpoT family protein 2547105..2549336 Nocardioides sp. JS614 4599492 YP_923585.1 CDS Noca_2393 NC_008699.1 2549486 2550409 D KEGG: rno:84352 procollagen, type I, alpha 2; hypothetical protein 2549486..2550409 Nocardioides sp. JS614 4599493 YP_923586.1 CDS Noca_2394 NC_008699.1 2550434 2551663 R PFAM: protein of unknown function DUF349; KEGG: pac:PPA1167 putative ATPase involved in DNA repair; hypothetical protein complement(2550434..2551663) Nocardioides sp. JS614 4599494 YP_923587.1 CDS Noca_2395 NC_008699.1 2551932 2553602 D PFAM: peptidase S1 and S6, chymotrypsin/Hap; KEGG: osa:4326135 Os01g0110200; peptidase S1 and S6, chymotrypsin/Hap 2551932..2553602 Nocardioides sp. JS614 4599495 YP_923588.1 CDS Noca_2396 NC_008699.1 2553675 2554388 D PFAM: beta-lactamase domain protein; KEGG: sco:SCO1509 hydrolase; beta-lactamase domain-containing protein 2553675..2554388 Nocardioides sp. JS614 4599496 YP_923589.1 CDS hisS NC_008699.1 2554390 2555745 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 2554390..2555745 Nocardioides sp. JS614 4599497 YP_923590.1 CDS aspS NC_008699.1 2555742 2557514 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 2555742..2557514 Nocardioides sp. JS614 4599498 YP_923591.1 CDS Noca_2399 NC_008699.1 2557678 2558688 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO5476 oligopeptide transport integral membrane protein; binding-protein-dependent transport system inner membrane protein 2557678..2558688 Nocardioides sp. JS614 4599499 YP_923592.1 CDS Noca_2400 NC_008699.1 2558738 2560537 D PFAM: extracellular solute-binding protein, family 5; KEGG: sma:SAV3151 ABC transporter protein BldKB; extracellular solute-binding protein 2558738..2560537 Nocardioides sp. JS614 4599500 YP_923593.1 CDS Noca_2401 NC_008699.1 2560713 2561729 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV3152 putative ABC transporter membrane protein BldKC; binding-protein-dependent transport systems inner membrane component 2560713..2561729 Nocardioides sp. JS614 4599501 YP_923594.1 CDS Noca_2402 NC_008699.1 2561740 2562783 D KEGG: sma:SAV2766 putative ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 2561740..2562783 Nocardioides sp. JS614 4599502 YP_923595.1 CDS Noca_2403 NC_008699.1 2562780 2564057 D KEGG: sco:SCO5116 putative peptide transport system ATP-binding subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 2562780..2564057 Nocardioides sp. JS614 4599503 YP_923596.1 CDS Noca_2404 NC_008699.1 2564088 2565458 D PFAM: magnesium chelatase, ChlI subunit; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: sco:SCO1506 conserved ATP/GTP binding protein; recombination factor protein RarA 2564088..2565458 Nocardioides sp. JS614 4599504 YP_923597.1 CDS Noca_2405 NC_008699.1 2565470 2565979 D hypothetical protein 2565470..2565979 Nocardioides sp. JS614 4599505 YP_923598.1 CDS Noca_2406 NC_008699.1 2565976 2566293 D hypothetical protein 2565976..2566293 Nocardioides sp. JS614 4599506 YP_923599.1 CDS alaS NC_008699.1 2566293 2568983 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 2566293..2568983 Nocardioides sp. JS614 4599507 YP_923600.1 CDS Noca_2408 NC_008699.1 2569007 2569477 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 2569007..2569477 Nocardioides sp. JS614 4599508 YP_923601.1 CDS Noca_2409 NC_008699.1 2569478 2570671 D PFAM: aminodeoxychorismate lyase; KEGG: fal:FRAAL5250 hypothetical integral membrane protein; aminodeoxychorismate lyase 2569478..2570671 Nocardioides sp. JS614 4598245 YP_923602.1 CDS Noca_2410 NC_008699.1 2570706 2571518 D PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding, N-terminal domain protein; KEGG: sma:SAV6853 putative shikimate 5-dehydrogenase; shikimate dehydrogenase 2570706..2571518 Nocardioides sp. JS614 4598246 YP_923603.1 CDS Noca_2411 NC_008699.1 2571515 2572243 D PFAM: peptidase A24A, prepilin type IV; KEGG: sco:SCO4549 putative type IV peptidase; peptidase A24A, prepilin type IV 2571515..2572243 Nocardioides sp. JS614 4598247 YP_923604.1 CDS Noca_2412 NC_008699.1 2572283 2573461 D catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 2572283..2573461 Nocardioides sp. JS614 4598248 YP_923605.1 CDS aroK NC_008699.1 2573458 2574009 D catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 2573458..2574009 Nocardioides sp. JS614 4598249 YP_923606.1 CDS aroB NC_008699.1 2574006 2575103 D catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 2574006..2575103 Nocardioides sp. JS614 4598250 YP_923607.1 CDS Noca_2415 NC_008699.1 2575100 2575540 D PFAM: dehydroquinase, class II; KEGG: pac:PPA1686 3-dehydroquinate dehydratase; 3-dehydroquinate dehydratase 2575100..2575540 Nocardioides sp. JS614 4598251 YP_923608.1 CDS Noca_2416 NC_008699.1 2575653 2576450 D PFAM: protein of unknown function DUF541; KEGG: bmb:BruAb1_1470 Omp28, immunoreactive 28 kDa outer membrane protein; hypothetical protein 2575653..2576450 Nocardioides sp. JS614 4598252 YP_923609.1 CDS Noca_2417 NC_008699.1 2576695 2577258 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 2576695..2577258 Nocardioides sp. JS614 4598253 YP_923610.1 CDS Noca_2418 NC_008699.1 2577258 2577665 D TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: tfu:Tfu_1094 NusB antitermination factor; transcription antitermination factor NusB 2577258..2577665 Nocardioides sp. JS614 4598254 YP_923611.1 CDS Noca_2419 NC_008699.1 2577702 2579078 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: sco:SCO3443 putative pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2577702..2579078 Nocardioides sp. JS614 4598255 YP_923612.1 CDS Noca_2420 NC_008699.1 2579075 2579911 D PFAM: protein of unknown function DUF1206; KEGG: fal:FRAAL1885 putative integral membrane protein; hypothetical protein 2579075..2579911 Nocardioides sp. JS614 4598256 YP_923613.1 CDS Noca_2421 NC_008699.1 2580027 2581346 D KEGG: fal:FRAAL6717 conserved hypothetical protein; putative signal peptide; putative signal peptide 2580027..2581346 Nocardioides sp. JS614 4598257 YP_923614.1 CDS Noca_2422 NC_008699.1 2581358 2582389 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: mmc:Mmcs_2351 alcohol dehydrogenase, zinc-binding protein; alcohol dehydrogenase 2581358..2582389 Nocardioides sp. JS614 4598258 YP_923615.1 CDS Noca_2423 NC_008699.1 2582618 2584087 D TIGRFAM: arginine/ornithine antiporter; PFAM: amino acid permease-associated region; KEGG: hch:HCH_05491 amino acid transporters; arginine/ornithine antiporter 2582618..2584087 Nocardioides sp. JS614 4598259 YP_923616.1 CDS Noca_2424 NC_008699.1 2584229 2585524 D catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase 2584229..2585524 Nocardioides sp. JS614 4598260 YP_923617.1 CDS Noca_2425 NC_008699.1 2585553 2586557 D TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; KEGG: pfl:PFL_4636 ornithine carbamoyltransferase; ornithine carbamoyltransferase 2585553..2586557 Nocardioides sp. JS614 4598261 YP_923618.2 CDS Noca_2426 NC_008699.1 2586572 2587528 D reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 2586572..2587528 Nocardioides sp. JS614 4598262 YP_923619.1 CDS Noca_2427 NC_008699.1 2587676 2588290 D regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase 2587676..2588290 Nocardioides sp. JS614 4598263 YP_923620.1 CDS pyrB NC_008699.1 2588287 2589261 D catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 2588287..2589261 Nocardioides sp. JS614 4598264 YP_923621.1 CDS pyrC NC_008699.1 2589258 2590556 D catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 2589258..2590556 Nocardioides sp. JS614 4598265 YP_923622.1 CDS Noca_2430 NC_008699.1 2590553 2591689 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 2590553..2591689 Nocardioides sp. JS614 4598266 YP_923623.1 CDS Noca_2431 NC_008699.1 2591689 2595120 D TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain, oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; RimK domain protein ATP-grasp; KEGG: sco:SCO1483 carbamoylphosphate synthetase large chain; carbamoyl-phosphate synthase large subunit 2591689..2595120 Nocardioides sp. JS614 4598267 YP_923624.1 CDS Noca_2432 NC_008699.1 2595122 2596189 D PFAM: dihydroorotate dehydrogenase; KEGG: tfu:Tfu_0927 dihydroorotate dehydrogenase; dihydroorotate oxidase A 2595122..2596189 Nocardioides sp. JS614 4598268 YP_923625.1 CDS Noca_2433 NC_008699.1 2596186 2597007 D TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: sma:SAV6869 putative orotidine 5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase 2596186..2597007 Nocardioides sp. JS614 4598269 YP_923626.1 CDS Noca_2434 NC_008699.1 2597004 2597435 D hypothetical protein 2597004..2597435 Nocardioides sp. JS614 4598270 YP_923627.1 CDS Noca_2435 NC_008699.1 2597538 2597864 D KEGG: sma:SAV6870 hypothetical protein; hypothetical protein 2597538..2597864 Nocardioides sp. JS614 4598271 YP_923628.1 CDS Noca_2436 NC_008699.1 2597880 2598464 D KEGG: lxx:Lxx11120 guanylate kinase; PFAM: guanylate kinase; SMART: guanylate kinase/L-type calcium channel region; guanylate kinase 2597880..2598464 Nocardioides sp. JS614 4598272 YP_923629.1 CDS Noca_2437 NC_008699.1 2598474 2598806 D TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; KEGG: sma:SAV6872 putative RNA polymerase omega subunit; DNA-directed RNA polymerase subunit omega 2598474..2598806 Nocardioides sp. JS614 4598273 YP_923630.1 CDS Noca_2438 NC_008699.1 2598781 2600091 D catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 2598781..2600091 Nocardioides sp. JS614 4598274 YP_923631.1 CDS Noca_2439 NC_008699.1 2600173 2601363 D catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 2600173..2601363 Nocardioides sp. JS614 4598275 YP_923632.1 CDS Noca_2440 NC_008699.1 2601488 2603521 D KEGG: tfu:Tfu_1073 primosomal protein N' (replication factor Y) (superfamily II helicase); primosomal protein N' 2601488..2603521 Nocardioides sp. JS614 4598276 YP_923633.1 CDS def NC_008699.1 2603597 2604142 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 2603597..2604142 Nocardioides sp. JS614 4598277 YP_923634.1 CDS fmt NC_008699.1 2604145 2605095 D modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 2604145..2605095 Nocardioides sp. JS614 4598278 YP_923635.1 CDS Noca_2443 NC_008699.1 2605306 2606724 D PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: sco:SCO1472 conserved hypothetical Sun-family protein SCL6.29c; Fmu (Sun) domain-containing protein 2605306..2606724 Nocardioides sp. JS614 4598279 YP_923636.1 CDS Noca_2445 NC_008699.1 2607448 2608428 D KEGG: rha:RHA1_ro05237 possible DNA ligase (ATP), C-terminal; putative DNA ligase (ATP), C-terminal 2607448..2608428 Nocardioides sp. JS614 4599786 YP_923637.1 CDS Noca_2446 NC_008699.1 2608438 2609100 D catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 2608438..2609100 Nocardioides sp. JS614 4599787 YP_923638.1 CDS Noca_2447 NC_008699.1 2609486 2610523 D KEGG: pac:PPA1752 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase 2609486..2610523 Nocardioides sp. JS614 4599788 YP_923639.1 CDS Noca_2448 NC_008699.1 2610526 2611179 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 2610526..2611179 Nocardioides sp. JS614 4599789 YP_923640.1 CDS Noca_2449 NC_008699.1 2611176 2612456 D PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: tfu:Tfu_1080 3,4-dihydroxy-2-butanone 4-phosphate synthase:GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase 2611176..2612456 Nocardioides sp. JS614 4599790 YP_923641.1 CDS Noca_2450 NC_008699.1 2612460 2612945 D PFAM: 6,7-dimethyl-8-ribityllumazine synthase; KEGG: sma:SAV6905 putative riboflavin synthase beta subunit; 6,7-dimethyl-8-ribityllumazine synthase 2612460..2612945 Nocardioides sp. JS614 4599791 YP_923642.1 CDS hisE NC_008699.1 2612957 2613220 D catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase 2612957..2613220 Nocardioides sp. JS614 4599792 YP_923643.1 CDS hisG NC_008699.1 2613232 2614095 D long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 2613232..2614095 Nocardioides sp. JS614 4599793 YP_923644.1 CDS Noca_2453 NC_008699.1 2614079 2614576 D KEGG: tfu:Tfu_1082 hypothetical protein; hypothetical protein 2614079..2614576 Nocardioides sp. JS614 4599794 YP_923645.1 CDS Noca_2454 NC_008699.1 2614573 2615496 R PFAM: Aldose 1-epimerase; KEGG: fal:FRAAL2426 putative aldose-1-epimerase; aldose 1-epimerase complement(2614573..2615496) Nocardioides sp. JS614 4599795 YP_923646.1 CDS Noca_2455 NC_008699.1 2615507 2616061 R KEGG: fal:FRAAL4224 hypothetical protein; hypothetical protein complement(2615507..2616061) Nocardioides sp. JS614 4599796 YP_923647.1 CDS Noca_2456 NC_008699.1 2616070 2617305 R KEGG: sma:SAV6730 hypothetical protein; hypothetical protein complement(2616070..2617305) Nocardioides sp. JS614 4599797 YP_923648.1 CDS Noca_2457 NC_008699.1 2617305 2617751 R KEGG: tfu:Tfu_1823 hypothetical protein; hypothetical protein complement(2617305..2617751) Nocardioides sp. JS614 4599798 YP_923649.1 CDS Noca_2458 NC_008699.1 2617821 2618348 D KEGG: sco:SCO1602 hypothetical protein; hypothetical protein 2617821..2618348 Nocardioides sp. JS614 4599799 YP_923650.1 CDS Noca_2459 NC_008699.1 2618629 2619360 D TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: pac:PPA1414 translation initiation factor IF-3; translation initiation factor 3 2618629..2619360 Nocardioides sp. JS614 4599800 YP_923651.1 CDS rpmI NC_008699.1 2619458 2619652 D PFAM: ribosomal protein L35; KEGG: sma:SAV6738 putative ribosomal protein L35; 50S ribosomal protein L35 2619458..2619652 Nocardioides sp. JS614 4599801 YP_923652.1 CDS rplT NC_008699.1 2619723 2620115 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 2619723..2620115 Nocardioides sp. JS614 4599802 YP_923653.1 CDS Noca_2462 NC_008699.1 2620178 2620891 D PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; KEGG: sma:SAV6740 putative rRNA methylase; tRNA/rRNA methyltransferase SpoU 2620178..2620891 Nocardioides sp. JS614 4599803 YP_923654.1 CDS Noca_2463 NC_008699.1 2620902 2623208 D PFAM: glycoside hydrolase, family 31; KEGG: rxy:Rxyl_2586 glycoside hydrolase, family 31; alpha-glucosidase 2620902..2623208 Nocardioides sp. JS614 4597085 YP_923655.1 CDS Noca_2464 NC_008699.1 2623205 2624233 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: sco:SCO1596 two-component sensor; ATPase domain-containing protein 2623205..2624233 Nocardioides sp. JS614 4597086 YP_923656.1 CDS pheS NC_008699.1 2624334 2625440 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 2624334..2625440 Nocardioides sp. JS614 4597087 YP_923657.1 CDS Noca_2466 NC_008699.1 2625448 2627931 D TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; KEGG: sma:SAV6743 putative phenylalanyl-tRNA synthetase beta subunit; phenylalanyl-tRNA synthetase subunit beta 2625448..2627931 Nocardioides sp. JS614 4597088 YP_923658.1 CDS Noca_2467 NC_008699.1 2627991 2628791 R PFAM: protein of unknown function DUF1503; KEGG: tfu:Tfu_2998 hypothetical protein; hypothetical protein complement(2627991..2628791) Nocardioides sp. JS614 4597089 YP_923659.1 CDS argC NC_008699.1 2628891 2629937 D catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 2628891..2629937 Nocardioides sp. JS614 4597090 YP_923660.1 CDS argJ NC_008699.1 2629934 2631085 D bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 2629934..2631085 Nocardioides sp. JS614 4597091 YP_923661.1 CDS Noca_2470 NC_008699.1 2631082 2632020 D catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 2631082..2632020 Nocardioides sp. JS614 4597092 YP_923662.1 CDS Noca_2471 NC_008699.1 2632017 2633252 D TIGRFAM: acetylornithine and succinylornithine aminotransferases; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class-III; KEGG: nfa:nfa19390 putative acetylornithine aminotransferase; acetylornithine aminotransferase 2632017..2633252 Nocardioides sp. JS614 4597093 YP_923663.1 CDS Noca_2472 NC_008699.1 2633249 2634169 D TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; KEGG: lxx:Lxx06070 ornithine carbamoyltransferase; ornithine carbamoyltransferase 2633249..2634169 Nocardioides sp. JS614 4597094 YP_923664.1 CDS Noca_2473 NC_008699.1 2634166 2634708 D regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor 2634166..2634708 Nocardioides sp. JS614 4597095 YP_923665.1 CDS Noca_2474 NC_008699.1 2634705 2636138 D catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; argininosuccinate synthase 2634705..2636138 Nocardioides sp. JS614 4597096 YP_923666.1 CDS Noca_2475 NC_008699.1 2636138 2637550 D catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 2636138..2637550 Nocardioides sp. JS614 4597097 YP_923667.1 CDS Noca_2476 NC_008699.1 2637534 2638127 D responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase 2637534..2638127 Nocardioides sp. JS614 4597098 YP_923668.1 CDS Noca_2477 NC_008699.1 2644083 2644439 D PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: tfu:Tfu_2039 hypothetical protein; single-strand binding protein/primosomal replication protein n 2644083..2644439 Nocardioides sp. JS614 4597102 YP_923669.1 CDS Noca_2478 NC_008699.1 2644414 2645538 R KEGG: sco:SCO1789 hypothetical protein; hypothetical protein complement(2644414..2645538) Nocardioides sp. JS614 4597103 YP_923670.1 CDS Noca_2479 NC_008699.1 2645586 2646584 D TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sma:SAV6490 hydrolase; HAD family hydrolase 2645586..2646584 Nocardioides sp. JS614 4597104 YP_923671.1 CDS Noca_2480 NC_008699.1 2646815 2647654 D TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; KEGG: sco:SCO1782 putative membrane protein; hemolysin A 2646815..2647654 Nocardioides sp. JS614 4597105 YP_923672.1 CDS ppnK NC_008699.1 2647654 2648613 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 2647654..2648613 Nocardioides sp. JS614 4597106 YP_923673.1 CDS Noca_2482 NC_008699.1 2648606 2650360 D TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: sma:SAV6499 putative recombination and DNA repair protein; DNA repair protein RecN 2648606..2650360 Nocardioides sp. JS614 4597107 YP_923674.1 CDS Noca_2483 NC_008699.1 2650433 2651617 D KEGG: rha:RHA1_ro00933 hypothetical protein; hypothetical protein 2650433..2651617 Nocardioides sp. JS614 4597108 YP_923675.1 CDS Noca_2484 NC_008699.1 2651614 2652480 D KEGG: nfa:nfa20040 hypothetical protein; hypothetical protein 2651614..2652480 Nocardioides sp. JS614 4597109 YP_923676.1 CDS pyrG NC_008699.1 2652492 2654201 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 2652492..2654201 Nocardioides sp. JS614 4597110 YP_923677.1 CDS Noca_2486 NC_008699.1 2654222 2654803 D PFAM: NUDIX hydrolase; KEGG: tfu:Tfu_1200 conserved hypothetical protein; NUDIX hydrolase 2654222..2654803 Nocardioides sp. JS614 4597111 YP_923678.1 CDS Noca_2487 NC_008699.1 2654859 2656169 D KEGG: tcx:Tcr_0373 hypothetical protein; hypothetical protein 2654859..2656169 Nocardioides sp. JS614 4597112 YP_923679.1 CDS Noca_2488 NC_008699.1 2656219 2657334 D TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; KEGG: sma:SAV6507 putative L-alanine dehydrogenase; L-alanine dehydrogenase 2656219..2657334 Nocardioides sp. JS614 4597113 YP_923680.1 CDS Noca_2489 NC_008699.1 2657331 2658287 D TIGRFAM: tyrosine recombinase XerD; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: nfa:nfa20070 putative recombinase; tyrosine recombinase XerD 2657331..2658287 Nocardioides sp. JS614 4597114 YP_923681.1 CDS Noca_2490 NC_008699.1 2658294 2660891 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: nfa:nfa37840 putative helicase; DEAD/DEAH box helicase 2658294..2660891 Nocardioides sp. JS614 4597115 YP_923682.1 CDS Noca_2491 NC_008699.1 2661013 2662389 R PFAM: glycoside hydrolase, family 26; KEGG: bfs:BF0771 putative mannosidase; glycoside hydrolase family protein complement(2661013..2662389) Nocardioides sp. JS614 4597116 YP_923683.1 CDS Noca_2492 NC_008699.1 2662413 2662703 D KEGG: pac:PPA0096 hypothetical protein; hypothetical protein 2662413..2662703 Nocardioides sp. JS614 4597117 YP_923684.1 CDS Noca_2493 NC_008699.1 2662907 2664010 D PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: sma:SAV6508 partitioning or sporulation protein; cobyrinic acid a,c-diamide synthase 2662907..2664010 Nocardioides sp. JS614 4597118 YP_923685.1 CDS Noca_2494 NC_008699.1 2664007 2664354 D KEGG: sma:SAV6509 hypothetical protein; hypothetical protein 2664007..2664354 Nocardioides sp. JS614 4597119 YP_923686.1 CDS Noca_2495 NC_008699.1 2664351 2665280 D PFAM: chromosome segregation and condensation protein ScpA; KEGG: sma:SAV6510 putative segregation and condensation protein A; condensin subunit ScpA 2664351..2665280 Nocardioides sp. JS614 4597120 YP_923687.1 CDS Noca_2496 NC_008699.1 2665270 2665995 D TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: sma:SAV6511 segregation and condensation protein B; condensin subunit ScpB 2665270..2665995 Nocardioides sp. JS614 4597121 YP_923688.1 CDS Noca_2497 NC_008699.1 2665992 2666747 D PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pac:PPA1385 ribosomal large subunit pseudouridine synthase B; ribosomal large subunit pseudouridine synthase B 2665992..2666747 Nocardioides sp. JS614 4597122 YP_923689.1 CDS Noca_2498 NC_008699.1 2666810 2667331 D PFAM: Mycobacterium tuberculosis paralogous family 11; KEGG: mpa:MAP2474c hypothetical protein; hypothetical protein 2666810..2667331 Nocardioides sp. JS614 4597828 YP_923690.1 CDS Noca_2499 NC_008699.1 2667444 2667830 D TIGRFAM: chorismate mutase; PFAM: Chorismate mutase of the AroH class; KEGG: sma:SAV6520 putative chorismate mutase; chorismate mutase 2667444..2667830 Nocardioides sp. JS614 4597829 YP_923691.1 CDS Noca_2500 NC_008699.1 2667823 2668908 D PFAM: amino acid-binding ACT domain protein; Prephenate dehydrogenase; KEGG: lxx:Lxx05720 prephenate dehydrogenase; prephenate dehydrogenase 2667823..2668908 Nocardioides sp. JS614 4597830 YP_923692.1 CDS cmk NC_008699.1 2668890 2669621 D Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 2668890..2669621 Nocardioides sp. JS614 4597831 YP_923693.1 CDS Noca_2502 NC_008699.1 2669643 2670407 D PFAM: phospholipid/glycerol acyltransferase; KEGG: sco:SCO1759 transferase; phospholipid/glycerol acyltransferase 2669643..2670407 Nocardioides sp. JS614 4597832 YP_923694.1 CDS engA NC_008699.1 2670404 2671789 D synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 2670404..2671789 Nocardioides sp. JS614 4597833 YP_923695.1 CDS Noca_2504 NC_008699.1 2672374 2673105 R PFAM: protein of unknown function DUF124; KEGG: rxy:Rxyl_3200 protein of unknown function DUF124; hypothetical protein complement(2672374..2673105) Nocardioides sp. JS614 4597835 YP_923696.1 CDS Noca_2505 NC_008699.1 2673229 2673645 D KEGG: mmu:233210 proline rich 12; hypothetical protein 2673229..2673645 Nocardioides sp. JS614 4597836 YP_923697.1 CDS Noca_2506 NC_008699.1 2673689 2674408 D PFAM: protein of unknown function DUF81; KEGG: rxy:Rxyl_0506 protein of unknown function DUF81; hypothetical protein 2673689..2674408 Nocardioides sp. JS614 4597837 YP_923698.1 CDS Noca_2507 NC_008699.1 2674572 2675333 D PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: nar:Saro_2963 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2674572..2675333 Nocardioides sp. JS614 4597838 YP_923699.1 CDS Noca_2508 NC_008699.1 2675402 2676154 D PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro04763 short-chain dehydrogenase; short-chain dehydrogenase/reductase SDR 2675402..2676154 Nocardioides sp. JS614 4597839 YP_923700.1 CDS Noca_2509 NC_008699.1 2676234 2677721 D catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 2676234..2677721 Nocardioides sp. JS614 4597840 YP_923701.1 CDS Noca_2510 NC_008699.1 2677718 2678239 D PFAM: cobalbumin biosynthesis enzyme; KEGG: mbo:Mb0260c putative bifunctional cobalamin biosynthesis protein CobU: cobinamide kinase + cobinamide phosphate guanylyltransferase; adenosylcobinamide kinase 2677718..2678239 Nocardioides sp. JS614 4597841 YP_923702.1 CDS Noca_2511 NC_008699.1 2678400 2679089 R PFAM: cobalamin-5-phosphate synthase CobS; KEGG: tfu:Tfu_0996 putative cobalamin (5'-phosphate) synthase : adenosylcobinamide-GDP ribazoletransferase; cobalamin-5'-phosphate synthase complement(2678400..2679089) Nocardioides sp. JS614 4597842 YP_923703.1 CDS Noca_2512 NC_008699.1 2679082 2680101 R PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; KEGG: mpa:MAP1948 putative nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase complement(2679082..2680101) Nocardioides sp. JS614 4597843 YP_923704.1 CDS Noca_2513 NC_008699.1 2680107 2680667 R KEGG: cgb:cg0382 adenylate kinase or related kinase; adenylate kinase complement(2680107..2680667) Nocardioides sp. JS614 4597844 YP_923705.1 CDS Noca_2514 NC_008699.1 2680690 2681478 D KEGG: pac:PPA2016 conserved protein (putative spermidine synthase); putative spermidine synthase 2680690..2681478 Nocardioides sp. JS614 4597845 YP_923706.1 CDS Noca_2515 NC_008699.1 2681620 2682918 R PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: mtc:MT3905 IS1557, transposase; transposase, IS204/IS1001/IS1096/IS1165 family protein complement(2681620..2682918) Nocardioides sp. JS614 4597846 YP_923707.1 CDS Noca_2516 NC_008699.1 2683044 2684156 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rha:RHA1_ro04692 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(2683044..2684156) Nocardioides sp. JS614 4597847 YP_923708.1 CDS Noca_2517 NC_008699.1 2684172 2685359 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rha:RHA1_ro04693 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(2684172..2685359) Nocardioides sp. JS614 4597848 YP_923709.1 CDS Noca_2518 NC_008699.1 2685470 2686666 D PFAM: Rieske [2Fe-2S] domain protein; KEGG: rha:RHA1_ro04538 ketosteroid-9-alpha-hydroxylase, oxygenase; Rieske (2Fe-2S) domain-containing protein 2685470..2686666 Nocardioides sp. JS614 4597849 YP_923710.1 CDS Noca_2519 NC_008699.1 2686666 2686968 D KEGG: mmc:Mmcs_4641 hypothetical protein; hypothetical protein 2686666..2686968 Nocardioides sp. JS614 4597850 YP_923711.1 CDS Noca_2520 NC_008699.1 2686969 2688069 D PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: nfa:nfa50680 putative oxidoreductase; ferredoxin 2686969..2688069 Nocardioides sp. JS614 4597851 YP_923712.1 CDS Noca_2521 NC_008699.1 2688226 2688804 D hypothetical protein 2688226..2688804 Nocardioides sp. JS614 4597852 YP_923713.1 CDS Noca_2522 NC_008699.1 2688838 2689530 R PFAM: beta-lactamase domain protein; KEGG: fra:Francci3_1630 beta-lactamase-like; beta-lactamase domain-containing protein complement(2688838..2689530) Nocardioides sp. JS614 4597853 YP_923714.1 CDS Noca_2523 NC_008699.1 2689530 2690258 R KEGG: sco:SCO1959 hypothetical protein; hypothetical protein complement(2689530..2690258) Nocardioides sp. JS614 4597854 YP_923715.1 CDS uvrA NC_008699.1 2690401 2693460 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 2690401..2693460 Nocardioides sp. JS614 4597855 YP_923716.1 CDS Noca_2525 NC_008699.1 2693599 2693967 D PFAM: Rieske [2Fe-2S] domain protein; KEGG: sco:SCO1356 iron sulphur protein (secreted protein); Rieske (2Fe-2S) domain-containing protein 2693599..2693967 Nocardioides sp. JS614 4597856 YP_923717.1 CDS uvrC NC_008699.1 2693997 2695997 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 2693997..2695997 Nocardioides sp. JS614 4597857 YP_923718.1 CDS Noca_2527 NC_008699.1 2696001 2696906 D PFAM: Uncharacterised P-loop ATPase protein UPF0042; KEGG: fal:FRAAL4592 putative kinase; hypothetical protein 2696001..2696906 Nocardioides sp. JS614 4597858 YP_923719.1 CDS Noca_2528 NC_008699.1 2696914 2697906 D PFAM: protein of unknown function UPF0052 and CofD; KEGG: tfu:Tfu_2019 conserved hypothetical protein CofD related; hypothetical protein 2696914..2697906 Nocardioides sp. JS614 4597859 YP_923720.1 CDS Noca_2529 NC_008699.1 2697929 2698915 D PFAM: protein of unknown function DUF199; KEGG: sma:SAV6294 sporulation regulatory protein; hypothetical protein 2697929..2698915 Nocardioides sp. JS614 4597860 YP_923721.1 CDS Noca_2530 NC_008699.1 2699083 2700078 D KEGG: cdi:DIP1310 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase 2699083..2700078 Nocardioides sp. JS614 4597861 YP_923722.1 CDS pgk NC_008699.1 2700081 2701280 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 2700081..2701280 Nocardioides sp. JS614 4597862 YP_923723.1 CDS Noca_2532 NC_008699.1 2701382 2702176 D PFAM: triosephosphate isomerase; KEGG: sco:SCO1945 triosephosphate isomerase; triosephosphate isomerase 2701382..2702176 Nocardioides sp. JS614 4597863 YP_923724.1 CDS Noca_2533 NC_008699.1 2702208 2702438 D TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: sco:SCO1944 protein-export membrane protein secG; protein translocase subunit secG 2702208..2702438 Nocardioides sp. JS614 4597864 YP_923725.1 CDS Noca_2534 NC_008699.1 2702462 2702821 D KEGG: pac:PPA0820 electron transport protein; electron transport protein 2702462..2702821 Nocardioides sp. JS614 4597865 YP_923726.1 CDS Noca_2535 NC_008699.1 2702881 2703846 R KEGG: mpa:MAP2795 hypothetical protein; hypothetical protein complement(2702881..2703846) Nocardioides sp. JS614 4598392 YP_923727.1 CDS Noca_2536 NC_008699.1 2703965 2704690 R TIGRFAM: 6-phosphogluconolactonase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: sco:SCO1939 putative 6-phosphogluconolactonase; 6-phosphogluconolactonase complement(2703965..2704690) Nocardioides sp. JS614 4598393 YP_923728.1 CDS Noca_2537 NC_008699.1 2704687 2705598 R KEGG: sma:SAV6312 oxppcycle protein; oxppcycle protein complement(2704687..2705598) Nocardioides sp. JS614 4598394 YP_923729.1 CDS Noca_2538 NC_008699.1 2705595 2707145 R catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase complement(2705595..2707145) Nocardioides sp. JS614 4598395 YP_923730.1 CDS Noca_2539 NC_008699.1 2707142 2708809 R PFAM: phosphoglucose isomerase (PGI); KEGG: lxx:Lxx11600 glucose-6-phosphate isomerase; glucose-6-phosphate isomerase complement(2707142..2708809) Nocardioides sp. JS614 4598396 YP_923731.1 CDS Noca_2540 NC_008699.1 2708806 2709918 R catalyzes the reversible formation of D-erythrose 4-phosphate and D-fructose 6-phosphate from sedoheptulose 7-phosphate and D-glyceraldehyde 3-phosphate; transaldolase complement(2708806..2709918) Nocardioides sp. JS614 4598397 YP_923732.1 CDS Noca_2541 NC_008699.1 2709976 2712120 R catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase complement(2709976..2712120) Nocardioides sp. JS614 4598398 YP_923733.1 CDS Noca_2542 NC_008699.1 2712282 2713226 D converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 2712282..2713226 Nocardioides sp. JS614 4598399 YP_923734.1 CDS Noca_2543 NC_008699.1 2713568 2714485 R PFAM: cytochrome oxidase assembly; KEGG: fra:Francci3_1653 cytochrome oxidase assembly; cytochrome oxidase assembly complement(2713568..2714485) Nocardioides sp. JS614 4598400 YP_923735.1 CDS Noca_2544 NC_008699.1 2714485 2715282 R PFAM: ABC-2 type transporter; KEGG: sco:SCO1929 putative integral membrane transport protein; ABC transporter complement(2714485..2715282) Nocardioides sp. JS614 4598401 YP_923736.1 CDS Noca_2545 NC_008699.1 2715279 2716226 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO1928 putative ABC transporter, ATP-binding subunit; ABC transporter-like protein complement(2715279..2716226) Nocardioides sp. JS614 4598402 YP_923737.1 CDS Noca_2546 NC_008699.1 2716269 2716937 R KEGG: sil:SPO0301 glycerophosphoryl diester phosphodiesterase family protein; hypothetical protein complement(2716269..2716937) Nocardioides sp. JS614 4598403 YP_923738.1 CDS Noca_2547 NC_008699.1 2716934 2717689 R PFAM: phosphoesterase, PA-phosphatase related; KEGG: fal:FRAAL0765 putative RNA-binding protein; PA-phosphatase-like phosphoesterase complement(2716934..2717689) Nocardioides sp. JS614 4598404 YP_923739.1 CDS Noca_2548 NC_008699.1 2717811 2718671 R KEGG: rxy:Rxyl_1180 hypothetical protein; hypothetical protein complement(2717811..2718671) Nocardioides sp. JS614 4598405 YP_923740.1 CDS Noca_2549 NC_008699.1 2718818 2719540 D PFAM: HMG-I and HMG-Y, DNA-binding domain protein; regulatory protein, ArsR; Helix-turn-helix, type 11 domain protein; KEGG: sma:SAV6324 DNA-binding protein; transcriptional regulator 2718818..2719540 Nocardioides sp. JS614 4598406 YP_923741.1 CDS Noca_2550 NC_008699.1 2719537 2720955 D TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: sco:SCO1925 hypothetical protein; FeS assembly protein SufB 2719537..2720955 Nocardioides sp. JS614 4598407 YP_923742.1 CDS Noca_2551 NC_008699.1 2721054 2722259 D TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: sco:SCO1924 hypothetical protein; FeS assembly protein SufD 2721054..2722259 Nocardioides sp. JS614 4598408 YP_923743.1 CDS Noca_2552 NC_008699.1 2722256 2722606 D PFAM: Rieske [2Fe-2S] domain protein; KEGG: sco:SCO1923 putative dioxygenase ferredoxin subunit; Rieske (2Fe-2S) domain-containing protein 2722256..2722606 Nocardioides sp. JS614 4598409 YP_923744.1 CDS Noca_2553 NC_008699.1 2722603 2723364 D KEGG: pac:PPA1546 ABC transporter ATP-binding protein; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase; FeS assembly ATPase SufC 2722603..2723364 Nocardioides sp. JS614 4598410 YP_923745.1 CDS Noca_2554 NC_008699.1 2723366 2724652 D TIGRFAM: cysteine desulfurases, SufS subfamily; PFAM: aminotransferase, class V; KEGG: sma:SAV6329 putative cysteine desulfurase; SufS subfamily cysteine desulfurase 2723366..2724652 Nocardioides sp. JS614 4598411 YP_923746.1 CDS Noca_2555 NC_008699.1 2724656 2725108 D TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: fra:Francci3_1665 SUF system FeS assembly protein; NifU family SUF system FeS assembly protein 2724656..2725108 Nocardioides sp. JS614 4598412 YP_923747.1 CDS Noca_2556 NC_008699.1 2725101 2725469 D PFAM: protein of unknown function DUF59; KEGG: fra:Francci3_1666 protein of unknown function DUF59; hypothetical protein 2725101..2725469 Nocardioides sp. JS614 4598413 YP_923748.1 CDS Noca_2557 NC_008699.1 2725541 2726149 D hypothetical protein 2725541..2726149 Nocardioides sp. JS614 4598414 YP_923749.1 CDS Noca_2558 NC_008699.1 2726160 2726630 R PFAM: transcriptional regulator TrmB; KEGG: sco:SCO3632 hypothetical protein; transcriptional regulator TrmB complement(2726160..2726630) Nocardioides sp. JS614 4598415 YP_923750.1 CDS Noca_2559 NC_008699.1 2726684 2727613 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV4541 putative ABC transporter ATP-binding protein; ABC transporter-like protein 2726684..2727613 Nocardioides sp. JS614 4598416 YP_923751.1 CDS Noca_2560 NC_008699.1 2727613 2729184 D KEGG: nfa:nfa24760 putative ABC transporter; putative ABC transporter 2727613..2729184 Nocardioides sp. JS614 4598417 YP_923752.1 CDS Noca_2561 NC_008699.1 2729195 2730103 D hypothetical protein 2729195..2730103 Nocardioides sp. JS614 4598418 YP_923753.1 CDS Noca_2562 NC_008699.1 2730104 2731036 R PFAM: protein of unknown function, zinc metallopeptidase putative; KEGG: mmc:Mmcs_2304 protein of unknown function, zinc metallopeptidase putative; hypothetical protein complement(2730104..2731036) Nocardioides sp. JS614 4598419 YP_923754.1 CDS Noca_2563 NC_008699.1 2731175 2732773 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV6426 ABC transporter ATP-binding protein; ABC transporter-like protein 2731175..2732773 Nocardioides sp. JS614 4598420 YP_923755.1 CDS Noca_2564 NC_008699.1 2732803 2733612 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: sco:SCO1838 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase 2732803..2733612 Nocardioides sp. JS614 4598421 YP_923756.1 CDS Noca_2565 NC_008699.1 2733647 2735530 D PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: fra:Francci3_1676 ABC transporter related; ABC transporter-like protein 2733647..2735530 Nocardioides sp. JS614 4598422 YP_923757.1 CDS Noca_2566 NC_008699.1 2735553 2736467 R KEGG: pac:PPA1535 conserved membrane spanning protein; membrane spanning protein complement(2735553..2736467) Nocardioides sp. JS614 4598423 YP_923758.1 CDS moaA NC_008699.1 2736512 2737513 D together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 2736512..2737513 Nocardioides sp. JS614 4598424 YP_923759.1 CDS Noca_2568 NC_008699.1 2737649 2737870 R KEGG: sma:SAV6456 hypothetical protein; hypothetical protein complement(2737649..2737870) Nocardioides sp. JS614 4598425 YP_923760.1 CDS Noca_2569 NC_008699.1 2737995 2738330 R KEGG: fra:Francci3_1908 hypothetical protein; hypothetical protein complement(2737995..2738330) Nocardioides sp. JS614 4598426 YP_923761.1 CDS Noca_2570 NC_008699.1 2738386 2738598 D PFAM: protein of unknown function DUF1458; KEGG: sco:SCO0915 hypothetical protein; hypothetical protein 2738386..2738598 Nocardioides sp. JS614 4598427 YP_923762.1 CDS Noca_2571 NC_008699.1 2738700 2739419 D TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: lxx:Lxx11740 3-oxoacyl-[acyl-carrier protein] reductase; 3-oxoacyl-ACP reductase 2738700..2739419 Nocardioides sp. JS614 4598428 YP_923763.1 CDS Noca_2572 NC_008699.1 2739422 2740195 D Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase 2739422..2740195 Nocardioides sp. JS614 4598429 YP_923764.1 CDS Noca_2573 NC_008699.1 2740188 2740772 D PFAM: Phosphoglycerate mutase; KEGG: tfu:Tfu_0135 hypothetical protein; phosphoglycerate mutase 2740188..2740772 Nocardioides sp. JS614 4598430 YP_923765.1 CDS Noca_2574 NC_008699.1 2740788 2742050 R KEGG: sco:SCO1808 putative phosphoserine phosphatase; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: amino acid-binding ACT domain protein; Haloacid dehalogenase domain protein hydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; phosphoserine phosphatase complement(2740788..2742050) Nocardioides sp. JS614 4598431 YP_923766.1 CDS Noca_2575 NC_008699.1 2742047 2742784 R KEGG: sma:SAV6479 hypothetical protein; hypothetical protein complement(2742047..2742784) Nocardioides sp. JS614 4597123 YP_923767.1 CDS Noca_2576 NC_008699.1 2742839 2743633 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nfa:nfa42910 putative ABC transporter ATP-binding protein; ABC transporter-like protein 2742839..2743633 Nocardioides sp. JS614 4597124 YP_923768.1 CDS Noca_2577 NC_008699.1 2743689 2744150 D PFAM: protein of unknown function DUF107; KEGG: tfu:Tfu_2226 putative integral membrane protein; hypothetical protein 2743689..2744150 Nocardioides sp. JS614 4597125 YP_923769.1 CDS Noca_2578 NC_008699.1 2744186 2745316 D PFAM: band 7 protein; KEGG: sma:SAV6482 secreted protein; SPFH domain-containing protein/band 7 family protein 2744186..2745316 Nocardioides sp. JS614 4597126 YP_923770.1 CDS Noca_2579 NC_008699.1 2745313 2746077 D PFAM: protein of unknown function DUF81; KEGG: nfa:nfa3090 hypothetical protein; hypothetical protein 2745313..2746077 Nocardioides sp. JS614 4597127 YP_923771.1 CDS Noca_2580 NC_008699.1 2746208 2746516 R hypothetical protein complement(2746208..2746516) Nocardioides sp. JS614 4597128 YP_923772.1 CDS Noca_2581 NC_008699.1 2746617 2747327 D PFAM: nitroreductase; KEGG: fal:FRAAL2433 putative NADH dehydrogenase (H(2)O(2) forming NADH oxidase) (NADH:oxygen oxidoreductase); nitroreductase 2746617..2747327 Nocardioides sp. JS614 4597129 YP_923773.1 CDS Noca_2582 NC_008699.1 2747285 2748277 R KEGG: rha:RHA1_ro06611 hypothetical protein; hypothetical protein complement(2747285..2748277) Nocardioides sp. JS614 4597130 YP_923774.1 CDS Noca_2583 NC_008699.1 2748274 2748939 R PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: cya:CYA_0909 glycerophosphoryl diester phosphodiesterase family protein; glycerophosphoryl diester phosphodiesterase complement(2748274..2748939) Nocardioides sp. JS614 4597131 YP_923775.1 CDS Noca_2584 NC_008699.1 2748959 2749672 R PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: mle:ML1573 possible amidotransferase; peptidase C26 complement(2748959..2749672) Nocardioides sp. JS614 4597132 YP_923776.1 CDS Noca_2585 NC_008699.1 2749674 2750453 R PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sma:SAV6727 short chain dehydrogenase; short chain dehydrogenase complement(2749674..2750453) Nocardioides sp. JS614 4597133 YP_923777.1 CDS Noca_2586 NC_008699.1 2750524 2751903 R PFAM: aldehyde dehydrogenase; KEGG: mmc:Mmcs_2059 betaine-aldehyde dehydrogenase; betaine-aldehyde dehydrogenase complement(2750524..2751903) Nocardioides sp. JS614 4597134 YP_923778.1 CDS Noca_2587 NC_008699.1 2751904 2753298 R PFAM: glutamine synthetase, catalytic region; KEGG: rxy:Rxyl_3196 glutamate--ammonia ligase; L-glutamine synthetase complement(2751904..2753298) Nocardioides sp. JS614 4597135 YP_923779.1 CDS Noca_2588 NC_008699.1 2753307 2754053 R PFAM: regulatory protein GntR, HTH; GntR domain protein; Helix-turn-helix, type 11 domain protein; KEGG: sma:SAV6724 GntR-family transcriptional regulator; GntR family transcriptional regulator complement(2753307..2754053) Nocardioides sp. JS614 4597136 YP_923780.1 CDS Noca_2589 NC_008699.1 2754189 2755772 D PFAM: amino acid permease-associated region; KEGG: sco:SCO4097 amino acid/metabolite permease; amino acid permease-associated protein 2754189..2755772 Nocardioides sp. JS614 4597137 YP_923781.1 CDS Noca_2590 NC_008699.1 2755773 2756690 D PFAM: Choline/ethanolamine kinase; aminoglycoside phosphotransferase; KEGG: mlo:mll5367 hypothetical protein; choline/ethanolamine kinase 2755773..2756690 Nocardioides sp. JS614 4597138 YP_923782.1 CDS Noca_2591 NC_008699.1 2756687 2759167 D PFAM: FAD dependent oxidoreductase; glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein, C-terminal barrel; KEGG: bxe:Bxe_B1666 dehydrogenase; FAD dependent oxidoreductase 2756687..2759167 Nocardioides sp. JS614 4597139 YP_923783.1 CDS Noca_2592 NC_008699.1 2759254 2759676 D KEGG: mmc:Mmcs_4977 hypothetical protein; hypothetical protein 2759254..2759676 Nocardioides sp. JS614 4597140 YP_923784.1 CDS Noca_2593 NC_008699.1 2759654 2760604 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: gsu:GSU0574 hypothetical protein; hypothetical protein complement(2759654..2760604) Nocardioides sp. JS614 4597141 YP_923785.1 CDS Noca_2594 NC_008699.1 2760838 2761881 D KEGG: cel:C18H7.3 Collagen protein 102; hypothetical protein 2760838..2761881 Nocardioides sp. JS614 4597142 YP_923786.1 CDS Noca_2595 NC_008699.1 2761914 2762555 D PFAM: peptidase C60, sortase A and B; KEGG: sco:SCO2841 secreted protein; peptidase C60, sortase A and B 2761914..2762555 Nocardioides sp. JS614 4597143 YP_923787.1 CDS Noca_2596 NC_008699.1 2762533 2763138 R KEGG: cef:CE1098 hypothetical protein; hypothetical protein complement(2762533..2763138) Nocardioides sp. JS614 4597144 YP_923788.1 CDS Noca_2597 NC_008699.1 2763238 2764362 D PFAM: luciferase family protein; KEGG: sma:SAV4763 monooxygenase; luciferase family protein 2763238..2764362 Nocardioides sp. JS614 4597145 YP_923789.1 CDS Noca_2598 NC_008699.1 2764359 2764958 D PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: sma:SAV4764 putative NAD(P)H-dependent FMN reductase; NADPH-dependent FMN reductase 2764359..2764958 Nocardioides sp. JS614 4597146 YP_923790.1 CDS Noca_2599 NC_008699.1 2764993 2765520 R PFAM: PEBP family protein; KEGG: tfu:Tfu_2116 YbhB and YbcL; PBP family phospholipid-binding protein complement(2764993..2765520) Nocardioides sp. JS614 4597147 YP_923791.1 CDS Noca_2600 NC_008699.1 2765623 2766846 D TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: sma:SAV6796 uroporphyrin-III C-methyltransferase / precorrin-2 oxidase / ferrochelatase; uroporphyrinogen-III C-methyltransferase 2765623..2766846 Nocardioides sp. JS614 4597148 YP_923792.1 CDS Noca_2601 NC_008699.1 2766846 2767649 D PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: tfu:Tfu_2264 putative rRNA methylase; tRNA/rRNA methyltransferase SpoU 2766846..2767649 Nocardioides sp. JS614 4597149 YP_923793.1 CDS Noca_2602 NC_008699.1 2767771 2768370 R KEGG: pac:PPA1525 polypeptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase complement(2767771..2768370) Nocardioides sp. JS614 4597150 YP_923794.1 CDS Noca_2603 NC_008699.1 2768452 2769822 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rha:RHA1_ro06400 butyryl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2768452..2769822 Nocardioides sp. JS614 4597151 YP_923795.1 CDS Noca_2604 NC_008699.1 2769822 2771039 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pau:PA14_66040 putative acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2769822..2771039 Nocardioides sp. JS614 4597152 YP_923796.1 CDS Noca_2605 NC_008699.1 2771049 2771708 R KEGG: hch:HCH_05781 hypothetical protein; hypothetical protein complement(2771049..2771708) Nocardioides sp. JS614 4597153 YP_923797.1 CDS Noca_2606 NC_008699.1 2771757 2773103 D KEGG: rha:RHA1_ro05489 hypothetical protein; hypothetical protein 2771757..2773103 Nocardioides sp. JS614 4597154 YP_923798.1 CDS Noca_2607 NC_008699.1 2773337 2774536 R TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase, C terminal domain protein; KEGG: rha:RHA1_ro05490 galactokinase; galactokinase complement(2773337..2774536) Nocardioides sp. JS614 4597155 YP_923799.1 CDS Noca_2608 NC_008699.1 2774579 2776015 D catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5-monophosphate dehydrogenase 2774579..2776015 Nocardioides sp. JS614 4597156 YP_923800.1 CDS Noca_2609 NC_008699.1 2776113 2777834 R TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: mmc:Mmcs_1356 choline/carnitine/betaine transport; choline/carnitine/betaine transporter complement(2776113..2777834) Nocardioides sp. JS614 4597157 YP_923801.1 CDS Noca_2610 NC_008699.1 2777881 2778474 R PFAM: LysR, substrate-binding; KEGG: rha:RHA1_ro06801 possible transcriptional regulator, LysR family; substrate-binding protein LysR complement(2777881..2778474) Nocardioides sp. JS614 4596414 YP_923802.1 CDS Noca_2611 NC_008699.1 2778653 2779249 R PFAM: Oxidoreductase FAD-binding domain protein; KEGG: sco:SCO7059 oxidoreductase; oxidoreductase FAD-binding subunit complement(2778653..2779249) Nocardioides sp. JS614 4596415 YP_923803.1 CDS Noca_2613 NC_008699.1 2779772 2780149 D hypothetical protein 2779772..2780149 Nocardioides sp. JS614 4596417 YP_923804.1 CDS Noca_2614 NC_008699.1 2780215 2781741 D TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: pac:PPA2190 membrane-associated protein; cell envelope-related transcriptional attenuator 2780215..2781741 Nocardioides sp. JS614 4596418 YP_923805.1 CDS Noca_2615 NC_008699.1 2781783 2783465 R PFAM: CHAP domain containing protein; KEGG: cch:Cag_1920 hypothetical protein; CHAP domain-containing protein complement(2781783..2783465) Nocardioides sp. JS614 4596419 YP_923806.1 CDS Noca_2616 NC_008699.1 2783645 2785351 D activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 2783645..2785351 Nocardioides sp. JS614 4596420 YP_923807.1 CDS Noca_2617 NC_008699.1 2785418 2786011 D PFAM: GCN5-related N-acetyltransferase; KEGG: sal:Sala_2035 hypothetical protein; N-acetyltransferase GCN5 2785418..2786011 Nocardioides sp. JS614 4596421 YP_923808.1 CDS Noca_2618 NC_008699.1 2786064 2787896 D PFAM: AMP-dependent synthetase and ligase; KEGG: rha:RHA1_ro03747 probable long-chain-fatty-acid--CoA ligase; AMP-dependent synthetase and ligase 2786064..2787896 Nocardioides sp. JS614 4596422 YP_923809.1 CDS Noca_2619 NC_008699.1 2788233 2789567 D PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: tfu:Tfu_2787 hypothetical protein; hypothetical protein 2788233..2789567 Nocardioides sp. JS614 4596424 YP_923810.1 CDS Noca_2620 NC_008699.1 2789573 2790814 R KEGG: sco:SCO0604 hypothetical protein; hypothetical protein complement(2789573..2790814) Nocardioides sp. JS614 4596425 YP_923811.1 CDS Noca_2621 NC_008699.1 2790887 2791105 R KEGG: sma:SAV6637 hypothetical protein; hypothetical protein complement(2790887..2791105) Nocardioides sp. JS614 4596426 YP_923812.1 CDS Noca_2622 NC_008699.1 2791139 2792086 R PFAM: aldo/keto reductase; KEGG: sma:SAV6640 oxidoreductase; aldo/keto reductase complement(2791139..2792086) Nocardioides sp. JS614 4596427 YP_923813.1 CDS Noca_2623 NC_008699.1 2792160 2792984 D KEGG: fal:FRAAL4312 putative undecaprenol kinase (bacitracin resistance protein); TIGRFAM: putative undecaprenol kinase; PFAM: Bacitracin resistance protein BacA; undecaprenyl-diphosphatase 2792160..2792984 Nocardioides sp. JS614 4596428 YP_923814.1 CDS Noca_2624 NC_008699.1 2793021 2793992 R TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA family protein; KEGG: sma:SAV6643 putative ion transport protein; magnesium and cobalt transport protein CorA complement(2793021..2793992) Nocardioides sp. JS614 4596429 YP_923815.1 CDS Noca_2625 NC_008699.1 2794025 2794753 D PFAM: Phosphoglycerate mutase; KEGG: mmc:Mmcs_3157 phosphoglycerate mutase; phosphoglycerate mutase 2794025..2794753 Nocardioides sp. JS614 4596430 YP_923816.1 CDS Noca_2626 NC_008699.1 2794763 2795338 D KEGG: sco:SCO1665 hypothetical protein; hypothetical protein 2794763..2795338 Nocardioides sp. JS614 4596431 YP_923817.1 CDS Noca_2627 NC_008699.1 2795335 2796108 D KEGG: nfa:nfa29330 hypothetical protein; hypothetical protein 2795335..2796108 Nocardioides sp. JS614 4596432 YP_923818.1 CDS Noca_2628 NC_008699.1 2796186 2797379 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 2796186..2797379 Nocardioides sp. JS614 4599907 YP_923819.1 CDS Noca_2629 NC_008699.1 2797412 2797852 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nfa:nfa16520 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 2797412..2797852 Nocardioides sp. JS614 4599908 YP_923820.1 CDS Noca_2630 NC_008699.1 2797996 2798844 R PFAM: protein of unknown function DUF75; KEGG: sma:SAV6650 hypothetical protein; hypothetical protein complement(2797996..2798844) Nocardioides sp. JS614 4599909 YP_923821.1 CDS metH NC_008699.1 2798981 2802715 D one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 2798981..2802715 Nocardioides sp. JS614 4599910 YP_923822.1 CDS Noca_2632 NC_008699.1 2802708 2803364 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: lxx:Lxx08260 hydrolase; HAD family hydrolase 2802708..2803364 Nocardioides sp. JS614 4599911 YP_923823.1 CDS Noca_2633 NC_008699.1 2803498 2803920 D hypothetical protein 2803498..2803920 Nocardioides sp. JS614 4599912 YP_923824.1 CDS Noca_2634 NC_008699.1 2803972 2805276 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: rha:RHA1_ro06091 sensor kinase, two-component system; ATPase domain-containing protein 2803972..2805276 Nocardioides sp. JS614 4599913 YP_923825.1 CDS Noca_2635 NC_008699.1 2805273 2805896 D PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: dge:Dgeo_0555 two component transcriptional regulator, LuxR family; response regulator receiver 2805273..2805896 Nocardioides sp. JS614 4599914 YP_923826.1 CDS Noca_2636 NC_008699.1 2806014 2806913 R KEGG: fal:FRAAL2865 hypothetical protein; hypothetical protein complement(2806014..2806913) Nocardioides sp. JS614 4599915 YP_923827.1 CDS Noca_2637 NC_008699.1 2806993 2808129 D PFAM: peptidase M50; KEGG: tfu:Tfu_1815 hypothetical protein; peptidase M50 2806993..2808129 Nocardioides sp. JS614 4599916 YP_923828.1 CDS Noca_2638 NC_008699.1 2808140 2809090 D PFAM: Methyltransferase type 11; KEGG: fal:FRAAL2867 SAM-dependent methyltransferase involved in tRNA-Met maturation; tRNA (adenine-58-N(1)-) methyltransferase 2808140..2809090 Nocardioides sp. JS614 4599917 YP_923829.1 CDS Noca_2639 NC_008699.1 2809280 2811034 D KEGG: sco:SCO1648 AAA ATPase; PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; vesicle-fusing ATPase 2809280..2811034 Nocardioides sp. JS614 4599918 YP_923830.1 CDS Noca_2640 NC_008699.1 2811257 2811442 D hypothetical protein 2811257..2811442 Nocardioides sp. JS614 4599919 YP_923831.1 CDS Noca_2641 NC_008699.1 2811457 2811942 R PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: vvy:VV2843 hypothetical protein; YbaK/prolyl-tRNA synthetase associated domain-containing protein complement(2811457..2811942) Nocardioides sp. JS614 4599920 YP_923832.1 CDS Noca_2642 NC_008699.1 2811951 2812577 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rha:RHA1_ro03999 hypothetical protein; type 11 methyltransferase complement(2811951..2812577) Nocardioides sp. JS614 4599921 YP_923833.1 CDS Noca_2643 NC_008699.1 2812620 2814128 D PFAM: protein of unknown function DUF245 domain protein; protein of unknown function DUF275 domain protein; KEGG: sma:SAV6678 proteasome component; hypothetical protein 2812620..2814128 Nocardioides sp. JS614 4599922 YP_923834.1 CDS Noca_2644 NC_008699.1 2814146 2814343 D PFAM: protein of unknown function DUF797; KEGG: sma:SAV6679 hypothetical protein; hypothetical protein 2814146..2814343 Nocardioides sp. JS614 4599923 YP_923835.1 CDS Noca_2645 NC_008699.1 2814349 2815200 D PFAM: 20S proteasome, A and B subunits; KEGG: sma:SAV6681 putative 20S proteasome beta-subunit; proteasome subunit beta 2814349..2815200 Nocardioides sp. JS614 4599924 YP_923836.1 CDS Noca_2646 NC_008699.1 2815205 2815972 D PFAM: 20S proteasome, A and B subunits; KEGG: sma:SAV6682 putative 20S proteasome alpha-subunit; 20S proteasome, A and B subunits 2815205..2815972 Nocardioides sp. JS614 4599925 YP_923837.1 CDS Noca_2647 NC_008699.1 2816098 2817111 D KEGG: mpa:MAP1247 hypothetical protein; hypothetical protein 2816098..2817111 Nocardioides sp. JS614 4599926 YP_923838.1 CDS Noca_2648 NC_008699.1 2817218 2818579 D PFAM: protein of unknown function DUF245 domain protein; protein of unknown function DUF275 domain protein; KEGG: sma:SAV6685 proteasome component; hypothetical protein 2817218..2818579 Nocardioides sp. JS614 4599927 YP_923839.1 CDS Noca_2649 NC_008699.1 2818757 2819710 D PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: sma:SAV6686 FK-506 binding protein, peptidyl-prolyl cis-trans isomerase; FKBP-type peptidylprolyl isomerase 2818757..2819710 Nocardioides sp. JS614 4599928 YP_923840.1 CDS Noca_2650 NC_008699.1 2819745 2820716 D KEGG: tfu:Tfu_1771 similar to transcriptional regulator; transcriptional regulator-like protein 2819745..2820716 Nocardioides sp. JS614 4599929 YP_923841.1 CDS Noca_2651 NC_008699.1 2820713 2821705 D KEGG: fal:FRAAL2881 hypothetical protein; hypothetical protein 2820713..2821705 Nocardioides sp. JS614 4599930 YP_923842.1 CDS Noca_2652 NC_008699.1 2821740 2822039 D TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: fal:FRAAL3711 putative sec-independent protein translocase protein TatA/E; twin arginine-targeting protein translocase 2821740..2822039 Nocardioides sp. JS614 4599931 YP_923843.1 CDS Noca_2653 NC_008699.1 2822053 2822907 D TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: sco:SCO1632 putative sec-independant protein translocase; Sec-independent protein translocase TatC 2822053..2822907 Nocardioides sp. JS614 4599932 YP_923844.1 CDS Noca_2654 NC_008699.1 2822904 2823323 D hypothetical protein 2822904..2823323 Nocardioides sp. JS614 4599933 YP_923845.1 CDS Noca_2655 NC_008699.1 2823344 2824219 D PFAM: diacylglycerol kinase, catalytic region; KEGG: sma:SAV6694 hypothetical protein; diacylglycerol kinase catalytic subunit 2823344..2824219 Nocardioides sp. JS614 4599934 YP_923846.1 CDS Noca_2656 NC_008699.1 2824229 2827039 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DSH domain protein; SMART: DEAD-like helicases-like; KEGG: sco:SCO1631 putative helicase; DSH domain-containing protein 2824229..2827039 Nocardioides sp. JS614 4599935 YP_923847.1 CDS Noca_2657 NC_008699.1 2827012 2827704 R PFAM: NAD-dependent epimerase/dehydratase; KEGG: fal:FRAAL4276 hypothetical protein; NAD-dependent epimerase/dehydratase complement(2827012..2827704) Nocardioides sp. JS614 4599936 YP_923848.1 CDS Noca_2658 NC_008699.1 2827793 2828938 D KEGG: mlo:mll1182 probable dimethylaniline monooxygenase; putative dimethylaniline monooxygenase 2827793..2828938 Nocardioides sp. JS614 4599937 YP_923849.1 CDS Noca_2659 NC_008699.1 2829167 2830072 R PFAM: 5'-3' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2; KEGG: sma:SAV6714 putative 5'-3' exonuclease; 5'-3' exonuclease complement(2829167..2830072) Nocardioides sp. JS614 4599938 YP_923850.1 CDS Noca_2660 NC_008699.1 2830131 2830583 D PFAM: regulatory protein, AsnC/Lrp family; KEGG: sco:SCO1425 putative AsnC-family transcriptional regulatory protein; AsnC family transcriptional regulator 2830131..2830583 Nocardioides sp. JS614 4599939 YP_923851.1 CDS Noca_2661 NC_008699.1 2830608 2832014 R PFAM: Radical SAM domain protein; KEGG: mxa:MXAN_4699 putative L-lysine 2,3-aminomutase; L-lysine 2,3-aminomutase complement(2830608..2832014) Nocardioides sp. JS614 4599940 YP_923852.1 CDS Noca_2662 NC_008699.1 2832169 2833230 D KEGG: sth:STH34 Zn-dependent alcohol dehydrogenase and related dehydrogenase; L-erythro-3,5-diaminohexanoate dehydrogenase 2832169..2833230 Nocardioides sp. JS614 4599941 YP_923853.1 CDS Noca_2663 NC_008699.1 2833227 2834807 D KEGG: sth:STH37 lysine 5,6-aminomutase alpha subunit; D-lysine 5,6-aminomutase subunit alpha / beta-lysine 5,6-aminomutase subunit alpha 2833227..2834807 Nocardioides sp. JS614 4599942 YP_923854.1 CDS Noca_2664 NC_008699.1 2834804 2835559 D PFAM: cobalamin B12-binding domain protein; KEGG: rfr:Rfer_3887 cobalamin B12-binding; beta-lysine 5,6-aminomutase subunit beta / D-lysine 5,6-aminomutase subunit beta 2834804..2835559 Nocardioides sp. JS614 4599943 YP_923855.1 CDS Noca_2665 NC_008699.1 2835556 2835957 D KEGG: rha:RHA1_ro05324 possible acyl-CoA hydrolase; 3-aminobutyryl-CoA ammonia-lyase 2835556..2835957 Nocardioides sp. JS614 4599944 YP_923856.1 CDS Noca_2666 NC_008699.1 2836431 2838086 D TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: fal:FRAAL3769 putative polyprenol-phosphate-mannosyl transferase; apolipoprotein N-acyltransferase 2836431..2838086 Nocardioides sp. JS614 4598317 YP_923857.1 CDS Noca_2667 NC_008699.1 2838079 2838852 D PFAM: glycosyl transferase, family 2; KEGG: sco:SCO1423 glycosyl transferase; dolichyl-phosphate beta-D-mannosyltransferase 2838079..2838852 Nocardioides sp. JS614 4598318 YP_923858.1 CDS Noca_2668 NC_008699.1 2838849 2839313 D PFAM: FxsA cytoplasmic membrane protein; KEGG: pau:PA14_57030 hypothetical protein; FxsA cytoplasmic membrane protein 2838849..2839313 Nocardioides sp. JS614 4598319 YP_923859.1 CDS Noca_2669 NC_008699.1 2839317 2839703 R KEGG: pac:PPA1223 hypothetical protein; hypothetical protein complement(2839317..2839703) Nocardioides sp. JS614 4598320 YP_923860.1 CDS Noca_2670 NC_008699.1 2839926 2841302 R PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO1420 putative integral membrane protein; major facilitator transporter complement(2839926..2841302) Nocardioides sp. JS614 4598321 YP_923861.1 CDS Noca_2671 NC_008699.1 2841299 2842123 R PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sma:SAV6927 putative glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase complement(2841299..2842123) Nocardioides sp. JS614 4598322 YP_923862.1 CDS Noca_2672 NC_008699.1 2842507 2844033 R PFAM: helix-turn-helix domain protein; EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: sco:SCO5998 putative UDP-N-acetylglucosamine transferase; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(2842507..2844033) Nocardioides sp. JS614 4598323 YP_923863.1 CDS Noca_2673 NC_008699.1 2844127 2845143 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: lxx:Lxx23600 alcohol dehydrogenase; alcohol dehydrogenase 2844127..2845143 Nocardioides sp. JS614 4598324 YP_923864.1 CDS Noca_2674 NC_008699.1 2845594 2847291 D KEGG: tfu:Tfu_1967 hypothetical protein; hypothetical protein 2845594..2847291 Nocardioides sp. JS614 4598325 YP_923865.1 CDS Noca_2675 NC_008699.1 2847756 2848508 D PFAM: pentapeptide repeat protein; pentapeptide repeat-containing protein 2847756..2848508 Nocardioides sp. JS614 4598326 YP_923866.1 CDS Noca_2676 NC_008699.1 2848519 2848719 R hypothetical protein complement(2848519..2848719) Nocardioides sp. JS614 4598327 YP_923867.1 CDS Noca_2677 NC_008699.1 2848814 2849257 D PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: nfa:nfa43930 putative transcriptional regulator; AraC family transcriptional regulator 2848814..2849257 Nocardioides sp. JS614 4598328 YP_923868.1 CDS Noca_2678 NC_008699.1 2849268 2849678 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sco:SCO4436 lyase; glyoxalase/bleomycin resistance protein/dioxygenase 2849268..2849678 Nocardioides sp. JS614 4598329 YP_923869.1 CDS Noca_2679 NC_008699.1 2849706 2852093 D PFAM: ABC transporter related; KEGG: rha:RHA1_ro03835 UvrABC system protein A; ABC transporter-like protein 2849706..2852093 Nocardioides sp. JS614 4598330 YP_923870.1 CDS Noca_2680 NC_008699.1 2852274 2852570 R PFAM: plasmid stabilization system; KEGG: fal:FRAAL1798 hypothetical protein; plasmid stabilization system protein complement(2852274..2852570) Nocardioides sp. JS614 4598331 YP_923871.1 CDS Noca_2681 NC_008699.1 2852567 2852851 R TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: fra:Francci3_2678 prevent-host-death protein; prevent-host-death family protein complement(2852567..2852851) Nocardioides sp. JS614 4598332 YP_923872.1 CDS Noca_2682 NC_008699.1 2852923 2853420 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rha:RHA1_ro03900 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 2852923..2853420 Nocardioides sp. JS614 4598333 YP_923873.1 CDS Noca_2683 NC_008699.1 2853417 2854313 R PFAM: luciferase family protein; KEGG: nfa:nfa22130 putative monooxygenase; luciferase family protein complement(2853417..2854313) Nocardioides sp. JS614 4598334 YP_923874.1 CDS Noca_2684 NC_008699.1 2854324 2855061 R KEGG: rha:RHA1_ro02398 possible membrane protein; hypothetical protein complement(2854324..2855061) Nocardioides sp. JS614 4598335 YP_923875.1 CDS Noca_2685 NC_008699.1 2855117 2855341 D hypothetical protein 2855117..2855341 Nocardioides sp. JS614 4598336 YP_923876.1 CDS Noca_2686 NC_008699.1 2855338 2855775 D KEGG: nfa:nfa35130 hypothetical protein; hypothetical protein 2855338..2855775 Nocardioides sp. JS614 4598337 YP_923877.1 CDS Noca_2687 NC_008699.1 2855857 2856528 D PFAM: YhhN family protein; KEGG: sma:SAV6447 hypothetical protein; YhhN family protein 2855857..2856528 Nocardioides sp. JS614 4598338 YP_923878.1 CDS Noca_2688 NC_008699.1 2856539 2857375 D PFAM: aldo/keto reductase; KEGG: sco:SCO7356 oxidoreductase; aldo/keto reductase 2856539..2857375 Nocardioides sp. JS614 4598339 YP_923879.1 CDS Noca_2689 NC_008699.1 2857372 2858454 D PFAM: alanine racemase domain protein; KEGG: cgb:cg2890 putative amino acid processing enzyme; alanine racemase domain-containing protein 2857372..2858454 Nocardioides sp. JS614 4598340 YP_923880.1 CDS Noca_2690 NC_008699.1 2858478 2859155 D PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: rha:RHA1_ro06901 peptidylprolyl isomerase; cyclophilin type peptidyl-prolyl cis-trans isomerase 2858478..2859155 Nocardioides sp. JS614 4598341 YP_923881.1 CDS Noca_2691 NC_008699.1 2859186 2859386 R KEGG: mmc:Mmcs_0605 short-chain dehydrogenase/reductase SDR; hypothetical protein complement(2859186..2859386) Nocardioides sp. JS614 4598342 YP_923882.1 CDS Noca_2692 NC_008699.1 2859386 2859871 R PFAM: OsmC family protein; KEGG: sma:SAV2602 hypothetical protein; OsmC family protein complement(2859386..2859871) Nocardioides sp. JS614 4598343 YP_923883.1 CDS Noca_2693 NC_008699.1 2859983 2860267 D hypothetical protein 2859983..2860267 Nocardioides sp. JS614 4598344 YP_923884.1 CDS Noca_2694 NC_008699.1 2860414 2861682 R KEGG: sma:SAV7509 serine/threonine protein kinase; serine/threonine protein kinase complement(2860414..2861682) Nocardioides sp. JS614 4598345 YP_923885.1 CDS Noca_2695 NC_008699.1 2861796 2863508 R PFAM: aminotransferase, class V; KEGG: dra:DR0028 aminotransferase, putative; class V aminotransferase complement(2861796..2863508) Nocardioides sp. JS614 4598346 YP_923886.1 CDS Noca_2696 NC_008699.1 2863560 2865305 R KEGG: aba:Acid345_3562 hypothetical protein; hypothetical protein complement(2863560..2865305) Nocardioides sp. JS614 4598347 YP_923887.1 CDS Noca_2697 NC_008699.1 2865508 2867979 D TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: fal:FRAAL1606 putative aminopeptidase; aminopeptidase N 2865508..2867979 Nocardioides sp. JS614 4598348 YP_923888.1 CDS Noca_2698 NC_008699.1 2867976 2868827 D PFAM: formate dehydrogenase, subunit FdhD; KEGG: rxy:Rxyl_0145 formate dehydrogenase family accessory protein FdhD; formate dehydrogenase subunit FdhD 2867976..2868827 Nocardioides sp. JS614 4598349 YP_923889.1 CDS Noca_2699 NC_008699.1 2868856 2870211 R KEGG: mpa:MAP4216 hypothetical protein; hypothetical protein complement(2868856..2870211) Nocardioides sp. JS614 4598350 YP_923890.1 CDS Noca_2700 NC_008699.1 2870336 2870845 R KEGG: pac:PPA0986 hypothetical protein; hypothetical protein complement(2870336..2870845) Nocardioides sp. JS614 4598351 YP_923891.1 CDS Noca_2701 NC_008699.1 2870929 2872089 D TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: sma:SAV7055 putative exonuclease; exodeoxyribonuclease I subunit D 2870929..2872089 Nocardioides sp. JS614 4598352 YP_923892.1 CDS Noca_2702 NC_008699.1 2872086 2874731 D KEGG: sma:SAV7056 putative exonuclease; putative exonuclease 2872086..2874731 Nocardioides sp. JS614 4598353 YP_923893.1 CDS Noca_2703 NC_008699.1 2874765 2876309 D PFAM: peptidase U62, modulator of DNA gyrase; KEGG: sma:SAV6461 modulator of DNA gyrase; C69 family peptidase 2874765..2876309 Nocardioides sp. JS614 4598354 YP_923894.1 CDS Noca_2704 NC_008699.1 2876309 2877703 D KEGG: sco:SCO1817 hypothetical protein; hypothetical protein 2876309..2877703 Nocardioides sp. JS614 4597272 YP_923895.1 CDS Noca_2705 NC_008699.1 2877672 2879150 R PFAM: CHAD domain containing protein; adenylate cyclase; KEGG: fal:FRAAL2447 hypothetical protein; putative adenylate cyclase domain; CHAD domain-containing protein complement(2877672..2879150) Nocardioides sp. JS614 4597273 YP_923896.1 CDS Noca_2706 NC_008699.1 2879159 2879509 R hypothetical protein complement(2879159..2879509) Nocardioides sp. JS614 4597274 YP_923897.1 CDS Noca_2707 NC_008699.1 2879678 2880208 D hypothetical protein 2879678..2880208 Nocardioides sp. JS614 4597275 YP_923898.1 CDS Noca_2708 NC_008699.1 2880242 2881495 R PFAM: beta-lactamase; KEGG: sma:SAV4283 beta-lactamase; beta-lactamase complement(2880242..2881495) Nocardioides sp. JS614 4597276 YP_923899.1 CDS Noca_2709 NC_008699.1 2881583 2884498 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase complement(2881583..2884498) Nocardioides sp. JS614 4597277 YP_923900.1 CDS Noca_2710 NC_008699.1 2884706 2885302 R SMART: regulatory protein, MerR; KEGG: pac:PPA1087 predicted transcriptional regulator; regulatory protein MerR complement(2884706..2885302) Nocardioides sp. JS614 4597278 YP_923901.1 CDS Noca_2711 NC_008699.1 2885615 2886094 R PFAM: protein of unknown function DUF151; KEGG: sco:SCO1382 hypothetical protein; hypothetical protein complement(2885615..2886094) Nocardioides sp. JS614 4597279 YP_923902.1 CDS Noca_2712 NC_008699.1 2886249 2886989 R PFAM: regulatory protein, MerR; KEGG: rha:RHA1_ro00905 possible transcriptional regulator; regulatory protein MerR complement(2886249..2886989) Nocardioides sp. JS614 4597280 YP_923903.1 CDS Noca_2713 NC_008699.1 2886998 2887528 R PFAM: Forkhead-associated protein; KEGG: fra:Francci3_1468 FHA domain containing protein; forkhead-associated protein complement(2886998..2887528) Nocardioides sp. JS614 4597281 YP_923904.1 CDS Noca_2714 NC_008699.1 2887635 2888021 R TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; KEGG: fra:Francci3_1467 glycine cleavage system H protein; glycine cleavage system H protein complement(2887635..2888021) Nocardioides sp. JS614 4597282 YP_923905.1 CDS Noca_2715 NC_008699.1 2888082 2888819 R PFAM: protein of unknown function DUF881; KEGG: sco:SCO1385 hypothetical protein; hypothetical protein complement(2888082..2888819) Nocardioides sp. JS614 4597283 YP_923906.1 CDS Noca_2716 NC_008699.1 2888812 2889144 R PFAM: protein of unknown function DUF1290; KEGG: sco:SCO1386 integral membrane protein; hypothetical protein complement(2888812..2889144) Nocardioides sp. JS614 4597284 YP_923907.1 CDS Noca_2717 NC_008699.1 2889141 2890001 R PFAM: protein of unknown function DUF881; KEGG: sco:SCO1387 membrane associated protein; hypothetical protein complement(2889141..2890001) Nocardioides sp. JS614 4597285 YP_923908.1 CDS Noca_2718 NC_008699.1 2889994 2890596 R PFAM: CDP-alcohol phosphatidyltransferase; KEGG: tfu:Tfu_1393 putative CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyl-transferase; CDP-diacylglycerol-phosphatidylglycerol phosphatidyltransferase complement(2889994..2890596) Nocardioides sp. JS614 4597286 YP_923909.1 CDS Noca_2719 NC_008699.1 2890680 2891729 R PFAM: CBS domain containing protein; protein of unknown function DUF21; KEGG: fra:Francci3_3000 protein of unknown function DUF21; hypothetical protein complement(2890680..2891729) Nocardioides sp. JS614 4597287 YP_923910.1 CDS Noca_2720 NC_008699.1 2891726 2893081 R PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: fal:FRAAL4939 hypothetical protein; hypothetical protein complement(2891726..2893081) Nocardioides sp. JS614 4597288 YP_923911.1 CDS Noca_2721 NC_008699.1 2893171 2894889 D KEGG: mxa:MXAN_6410 hypothetical protein; hypothetical protein 2893171..2894889 Nocardioides sp. JS614 4597289 YP_923912.1 CDS Noca_2722 NC_008699.1 2894895 2896133 D PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_4681 protein of unknown function DUF1501; hypothetical protein 2894895..2896133 Nocardioides sp. JS614 4597290 YP_923913.1 CDS Noca_2723 NC_008699.1 2896144 2897091 R KEGG: bxe:Bxe_A1864 hypothetical protein; hypothetical protein complement(2896144..2897091) Nocardioides sp. JS614 4597291 YP_923914.1 CDS Noca_2724 NC_008699.1 2897503 2898606 R PFAM: 2-nitropropane dioxygenase, NPD; KEGG: rha:RHA1_ro04690 probable 2-nitropropane dioxygenase; 2-nitropropane dioxygenase complement(2897503..2898606) Nocardioides sp. JS614 4597292 YP_923915.1 CDS Noca_2725 NC_008699.1 2898636 2900282 R activates fatty acids by binding to coenzyme A; in Mycobacterium may be involved in virulence; acyl-CoA synthetase complement(2898636..2900282) Nocardioides sp. JS614 4597293 YP_923916.1 CDS Noca_2726 NC_008699.1 2900330 2901130 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2900330..2901130 Nocardioides sp. JS614 4597294 YP_923917.1 CDS Noca_2727 NC_008699.1 2901179 2902021 D KEGG: fal:FRAAL3586 hypothetical protein; hypothetical protein 2901179..2902021 Nocardioides sp. JS614 4597295 YP_923918.1 CDS Noca_2728 NC_008699.1 2902126 2902317 R PFAM: regulatory protein, LacI; KEGG: rxy:Rxyl_2600 transcriptional regulator, LacI family; regulatory protein LacI complement(2902126..2902317) Nocardioides sp. JS614 4597296 YP_923919.1 CDS Noca_2729 NC_008699.1 2902360 2904039 R activates fatty acids by binding to coenzyme A; acyl-CoA synthetase complement(2902360..2904039) Nocardioides sp. JS614 4597297 YP_923920.1 CDS Noca_2730 NC_008699.1 2904052 2904816 R hypothetical protein complement(2904052..2904816) Nocardioides sp. JS614 4597298 YP_923921.1 CDS Noca_2731 NC_008699.1 2904955 2906013 R PFAM: luciferase family protein; KEGG: rha:RHA1_ro04686 probable 5,10-methylenetetrahydromethanopterin reductase; luciferase family protein complement(2904955..2906013) Nocardioides sp. JS614 4597299 YP_923922.1 CDS Noca_2732 NC_008699.1 2906075 2907034 D PFAM: protein of unknown function DUF35; KEGG: nfa:nfa5230 hypothetical protein; hypothetical protein 2906075..2907034 Nocardioides sp. JS614 4597300 YP_923923.1 CDS Noca_2733 NC_008699.1 2907055 2908122 D KEGG: mmc:Mmcs_4635 lipid-transfer protein; lipid-transfer protein 2907055..2908122 Nocardioides sp. JS614 4597301 YP_923924.1 CDS Noca_2734 NC_008699.1 2908122 2909288 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 2908122..2909288 Nocardioides sp. JS614 4597302 YP_923925.1 CDS Noca_2735 NC_008699.1 2909306 2909620 D PFAM: helix-turn-helix domain protein; KEGG: sco:SCO7279 DNA-binding protein; helix-turn-helix domain-containing protein 2909306..2909620 Nocardioides sp. JS614 4597303 YP_923926.1 CDS Noca_2736 NC_008699.1 2909633 2910235 R PFAM: peptidase S14, ClpP; KEGG: sco:SCO7280 putative ATP-dependent Clp protease proteolytic subunit 2; ATP-dependent Clp protease proteolytic subunit ClpP complement(2909633..2910235) Nocardioides sp. JS614 4597304 YP_923927.1 CDS Noca_2737 NC_008699.1 2910241 2910843 R PFAM: peptidase S14, ClpP; KEGG: sco:SCO7281 putative ATP-dependent Clp protease proteolytic subunit 1; ClpP1 peptidase complement(2910241..2910843) Nocardioides sp. JS614 4597305 YP_923928.1 CDS Noca_2738 NC_008699.1 2910947 2911714 D TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: lxx:Lxx14830 methionine aminopeptidase; methionine aminopeptidase 2910947..2911714 Nocardioides sp. JS614 4597306 YP_923929.1 CDS Noca_2739 NC_008699.1 2911727 2912968 R KEGG: rha:RHA1_ro04679 cytochrome P450 CYP125; cytochrome P450 CYP125 complement(2911727..2912968) Nocardioides sp. JS614 4597307 YP_923930.1 CDS Noca_2740 NC_008699.1 2913079 2914245 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 2913079..2914245 Nocardioides sp. JS614 4597308 YP_923931.1 CDS Noca_2741 NC_008699.1 2914287 2915168 R PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro04654 3-oxoacyl-[acyl-carrier-protein] reductase; short chain dehydrogenase complement(2914287..2915168) Nocardioides sp. JS614 4597309 YP_923932.1 CDS Noca_2742 NC_008699.1 2915168 2915926 R PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro04653 short chain dehydrogenase; short chain dehydrogenase complement(2915168..2915926) Nocardioides sp. JS614 4597310 YP_923933.1 CDS Noca_2743 NC_008699.1 2915976 2916755 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2915976..2916755 Nocardioides sp. JS614 4597311 YP_923934.1 CDS Noca_2744 NC_008699.1 2916752 2917633 D PFAM: coenzyme A transferase; KEGG: sma:SAV6202 putative glutaconate CoA-transferase, subunit A; coenzyme A transferase 2916752..2917633 Nocardioides sp. JS614 4598778 YP_923935.1 CDS Noca_2745 NC_008699.1 2917630 2918400 D KEGG: nfa:nfa5080 putative CoA transferase beta subunit; putative CoA transferase subunit beta 2917630..2918400 Nocardioides sp. JS614 4598779 YP_923936.1 CDS Noca_2746 NC_008699.1 2918393 2919481 D PFAM: 2-nitropropane dioxygenase, NPD; KEGG: mmc:Mmcs_4686 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 2918393..2919481 Nocardioides sp. JS614 4598780 YP_923937.1 CDS Noca_2747 NC_008699.1 2919478 2920140 R KEGG: rxy:Rxyl_3099 hypothetical protein; hypothetical protein complement(2919478..2920140) Nocardioides sp. JS614 4598781 YP_923938.1 CDS Noca_2748 NC_008699.1 2920249 2921538 D KEGG: tma:TM0599 hypothetical protein; hypothetical protein 2920249..2921538 Nocardioides sp. JS614 4598782 YP_923939.1 CDS Noca_2749 NC_008699.1 2921520 2922008 D hypothetical protein 2921520..2922008 Nocardioides sp. JS614 4598783 YP_923940.1 CDS Noca_2750 NC_008699.1 2922034 2922402 D hypothetical protein 2922034..2922402 Nocardioides sp. JS614 4598784 YP_923941.1 CDS Noca_2751 NC_008699.1 2922568 2923614 D hypothetical protein 2922568..2923614 Nocardioides sp. JS614 4598785 YP_923942.1 CDS Noca_2752 NC_008699.1 2923745 2924233 R hypothetical protein complement(2923745..2924233) Nocardioides sp. JS614 4598786 YP_923943.1 CDS Noca_2753 NC_008699.1 2924375 2925136 R PFAM: Integrase, catalytic region; KEGG: cef:CE2619 putative transposase; integrase catalytic subunit complement(2924375..2925136) Nocardioides sp. JS614 4598787 YP_923944.1 CDS Noca_2754 NC_008699.1 2925404 2926984 D KEGG: rpa:RPA2214 possible helicase; hypothetical protein 2925404..2926984 Nocardioides sp. JS614 4598788 YP_923945.1 CDS Noca_2755 NC_008699.1 2927018 2927938 D hypothetical protein 2927018..2927938 Nocardioides sp. JS614 4598789 YP_923946.1 CDS Noca_2756 NC_008699.1 2928059 2929612 D PFAM: Integrase, catalytic region; KEGG: rha:RHA1_ro06977 possible transposase; integrase catalytic subunit 2928059..2929612 Nocardioides sp. JS614 4598790 YP_923947.1 CDS Noca_2757 NC_008699.1 2929609 2930388 D PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: rha:RHA1_ro06982 possible insertion sequence ATP-binding protein; IstB ATP binding domain-containing protein 2929609..2930388 Nocardioides sp. JS614 4598791 YP_923948.1 CDS Noca_2758 NC_008699.1 2931241 2932566 R KEGG: mbo:Mb3101 hypothetical protein; hypothetical protein complement(2931241..2932566) Nocardioides sp. JS614 4598792 YP_923949.1 CDS Noca_2759 NC_008699.1 2932659 2933081 R PFAM: regulatory protein, MarR; KEGG: mmc:Mmcs_5385 transcriptional regulator, MarR family; regulatory protein MarR complement(2932659..2933081) Nocardioides sp. JS614 4598793 YP_923950.1 CDS Noca_2760 NC_008699.1 2933236 2933346 D hypothetical protein 2933236..2933346 Nocardioides sp. JS614 4598794 YP_923951.1 CDS Noca_2761 NC_008699.1 2933437 2933604 D hypothetical protein 2933437..2933604 Nocardioides sp. JS614 4598795 YP_923952.1 CDS Noca_2762 NC_008699.1 2933601 2934068 D hypothetical protein 2933601..2934068 Nocardioides sp. JS614 4598796 YP_923953.1 CDS Noca_2764 NC_008699.1 2935358 2936521 R KEGG: rha:RHA1_ro04599 probable acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; acetyl-CoA acetyltransferase complement(2935358..2936521) Nocardioides sp. JS614 4598798 YP_923954.1 CDS Noca_2765 NC_008699.1 2936514 2937146 R PFAM: regulatory protein, TetR; KEGG: rha:RHA1_ro04598 possible transcriptional regulator; regulatory protein TetR complement(2936514..2937146) Nocardioides sp. JS614 4598799 YP_923955.1 CDS Noca_2766 NC_008699.1 2937151 2937933 R PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sma:SAV6197 putative oxidoreductase; short chain dehydrogenase complement(2937151..2937933) Nocardioides sp. JS614 4598800 YP_923956.1 CDS Noca_2767 NC_008699.1 2937930 2939066 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rha:RHA1_ro04596 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(2937930..2939066) Nocardioides sp. JS614 4598801 YP_923957.1 CDS Noca_2768 NC_008699.1 2939160 2940629 D PFAM: AMP-dependent synthetase and ligase; KEGG: rha:RHA1_ro04595 CoA ligase; AMP-dependent synthetase and ligase 2939160..2940629 Nocardioides sp. JS614 4598802 YP_923958.1 CDS Noca_2769 NC_008699.1 2940629 2941810 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: nfa:nfa4810 putative acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2940629..2941810 Nocardioides sp. JS614 4598803 YP_923959.1 CDS Noca_2770 NC_008699.1 2941807 2942676 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: mmc:Mmcs_4696 acyl-CoA dehydrogenase-like protein; acyl-CoA dehydrogenase domain-containing protein 2941807..2942676 Nocardioides sp. JS614 4598804 YP_923960.1 CDS Noca_2771 NC_008699.1 2942676 2943647 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: nfa:nfa4790 putative acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2942676..2943647 Nocardioides sp. JS614 4598805 YP_923961.1 CDS Noca_2772 NC_008699.1 2943759 2944295 D PFAM: Cupin 2, conserved barrel domain protein; KEGG: sus:Acid_7653 cupin 2, conserved barrel domain protein; cupin 2943759..2944295 Nocardioides sp. JS614 4598806 YP_923962.1 CDS Noca_2773 NC_008699.1 2944317 2944931 R PFAM: flavin reductase domain protein, FMN-binding; KEGG: rha:RHA1_ro08962 possible oxidoreductase; flavin reductase domain-containing protein complement(2944317..2944931) Nocardioides sp. JS614 4598807 YP_923963.1 CDS Noca_2774 NC_008699.1 2945010 2945912 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rha:RHA1_ro04541 3,4-DHSA dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(2945010..2945912) Nocardioides sp. JS614 4598808 YP_923964.1 CDS Noca_2775 NC_008699.1 2945909 2946817 R PFAM: alpha/beta hydrolase fold; KEGG: nfa:nfa4730 putative hydrolase; alpha/beta hydrolase fold protein complement(2945909..2946817) Nocardioides sp. JS614 4598809 YP_923965.1 CDS Noca_2776 NC_008699.1 2946819 2947985 R PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rha:RHA1_ro04539 3-HSA hydroxylase, oxygenase; acyl-CoA dehydrogenase type 2 complement(2946819..2947985) Nocardioides sp. JS614 4598810 YP_923966.1 CDS Noca_2777 NC_008699.1 2948101 2948322 R hypothetical protein complement(2948101..2948322) Nocardioides sp. JS614 4598811 YP_923967.1 CDS Noca_2778 NC_008699.1 2948433 2948567 R KEGG: rha:RHA1_ro05800 acetaldehyde dehydrogenase (acetylating); acetaldehyde dehydrogenase complement(2948433..2948567) Nocardioides sp. JS614 4598812 YP_923968.1 CDS Noca_2779 NC_008699.1 2948586 2949407 R PFAM: Hydratase/decarboxylase; KEGG: rha:RHA1_ro08085 2-oxopent-4-enoate hydratase; hydratase/decarboxylase complement(2948586..2949407) Nocardioides sp. JS614 4598813 YP_923969.1 CDS Noca_2780 NC_008699.1 2949443 2951137 D initiates steroid ring degradation; catalyzes the transhydrogenation of 3-keto-4-ene-steroid to 3-keto-1,4-diene-steroid e.g., progesterone to 1,4-androstadiene-3,17-dione; 3-ketosteroid-delta-1-dehydrogenase 2949443..2951137 Nocardioides sp. JS614 4596256 YP_923970.1 CDS Noca_2781 NC_008699.1 2951137 2951985 D PFAM: MaoC domain protein dehydratase; KEGG: rha:RHA1_ro04531 2-enoyl acyl-CoA hydratase; dehydratase 2951137..2951985 Nocardioides sp. JS614 4596257 YP_923971.1 CDS Noca_2782 NC_008699.1 2951987 2953189 R PFAM: protein of unknown function DUF480; Methyltransferase type 11; Methyltransferase type 12; KEGG: sus:Acid_1185 protein of unknown function DUF480; hypothetical protein complement(2951987..2953189) Nocardioides sp. JS614 4596258 YP_923972.1 CDS Noca_2783 NC_008699.1 2953200 2953712 R KEGG: rha:RHA1_ro00985 hypothetical protein; hypothetical protein complement(2953200..2953712) Nocardioides sp. JS614 4596259 YP_923973.1 CDS Noca_2784 NC_008699.1 2953751 2954560 D PFAM: protein of unknown function DUF344; KEGG: mbo:Mb3261c possible transcriptional regulatory protein PvdS (probable RNA polymerase sigma factor); hypothetical protein 2953751..2954560 Nocardioides sp. JS614 4596260 YP_923974.1 CDS Noca_2785 NC_008699.1 2954612 2955403 D KEGG: mpa:MAP2690c hypothetical protein; hypothetical protein 2954612..2955403 Nocardioides sp. JS614 4596261 YP_923975.1 CDS Noca_2786 NC_008699.1 2955419 2956603 R KEGG: nfa:nfa4530 lipid-transfer protein; lipid-transfer protein complement(2955419..2956603) Nocardioides sp. JS614 4596262 YP_923976.1 CDS Noca_2787 NC_008699.1 2956600 2956980 R PFAM: MaoC domain protein dehydratase; KEGG: mmc:Mmcs_4673 MaoC-like dehydratase; dehydratase complement(2956600..2956980) Nocardioides sp. JS614 4596263 YP_923977.1 CDS Noca_2788 NC_008699.1 2956977 2957375 R PFAM: protein of unknown function DUF35; KEGG: nfa:nfa4510 hypothetical protein; hypothetical protein complement(2956977..2957375) Nocardioides sp. JS614 4596264 YP_923978.1 CDS Noca_2789 NC_008699.1 2957372 2957905 R KEGG: nfa:nfa4510 hypothetical protein; hypothetical protein complement(2957372..2957905) Nocardioides sp. JS614 4596265 YP_923979.1 CDS Noca_2790 NC_008699.1 2957967 2960198 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rha:RHA1_ro04485 probable acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(2957967..2960198) Nocardioides sp. JS614 4596266 YP_923980.1 CDS Noca_2791 NC_008699.1 2960288 2961238 D PFAM: alpha/beta hydrolase fold; KEGG: nfa:nfa15720 putative hydrolase; alpha/beta hydrolase fold protein 2960288..2961238 Nocardioides sp. JS614 4596267 YP_923981.1 CDS Noca_2792 NC_008699.1 2961204 2962670 R PFAM: protein of unknown function UPF0089; KEGG: rha:RHA1_ro06855 hypothetical protein; diacylglycerol O-acyltransferase complement(2961204..2962670) Nocardioides sp. JS614 4596268 YP_923982.1 CDS Noca_2793 NC_008699.1 2962841 2964103 D PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: rha:RHA1_ro06856 possible esterase/lipase; alpha/beta hydrolase domain-containing protein 2962841..2964103 Nocardioides sp. JS614 4596269 YP_923983.1 CDS Noca_2794 NC_008699.1 2964100 2965500 R KEGG: sco:SCO2409 secreted protein; membrane-bound lytic murein transglycosylase B-like protein complement(2964100..2965500) Nocardioides sp. JS614 4596270 YP_923984.1 CDS Noca_2795 NC_008699.1 2965723 2967777 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rha:RHA1_ro04483 possible acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(2965723..2967777) Nocardioides sp. JS614 4596271 YP_923985.1 CDS Noca_2796 NC_008699.1 2967846 2968514 D KEGG: tfu:Tfu_0569 hypothetical protein; hypothetical protein 2967846..2968514 Nocardioides sp. JS614 4596272 YP_923986.1 CDS Noca_2797 NC_008699.1 2968458 2969612 R KEGG: mmc:Mmcs_5100 hypothetical protein; hypothetical protein complement(2968458..2969612) Nocardioides sp. JS614 4596273 YP_923987.1 CDS Noca_2798 NC_008699.1 2969605 2970354 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rha:RHA1_ro04657 possible methyltransferase; type 11 methyltransferase complement(2969605..2970354) Nocardioides sp. JS614 4596274 YP_923988.1 CDS Noca_2799 NC_008699.1 2970341 2971606 R PFAM: glycosyl transferase, group 1; KEGG: rha:RHA1_ro04656 probable phosphatidylinositol alpha-mannosyltransferase; group 1 glycosyl transferase complement(2970341..2971606) Nocardioides sp. JS614 4596275 YP_923989.1 CDS Noca_2800 NC_008699.1 2971805 2972410 D PFAM: regulatory protein, TetR; KEGG: nfa:nfa4470 putative transcriptional regulator; TetR family transcriptional regulator 2971805..2972410 Nocardioides sp. JS614 4596276 YP_923990.1 CDS Noca_2801 NC_008699.1 2972454 2972675 D KEGG: fra:Francci3_1080 hypothetical protein; hypothetical protein 2972454..2972675 Nocardioides sp. JS614 4596277 YP_923991.1 CDS Noca_2802 NC_008699.1 2972690 2974255 R TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: nfa:nfa48950 putative peptide chain release factor; peptide chain release factor 3 complement(2972690..2974255) Nocardioides sp. JS614 4596278 YP_923992.1 CDS Noca_2803 NC_008699.1 2974373 2975182 D PFAM: low molecular weight phosphotyrosine protein phosphatase; regulatory protein, ArsR; KEGG: mmc:Mmcs_4520 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 2974373..2975182 Nocardioides sp. JS614 4596279 YP_923993.1 CDS Noca_2804 NC_008699.1 2975175 2975576 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sme:SMb21154 hypothetical protein, bleomycin resistance protein family; glyoxalase/bleomycin resistance protein/dioxygenase 2975175..2975576 Nocardioides sp. JS614 4596280 YP_923994.1 CDS Noca_2805 NC_008699.1 2975573 2975908 D PFAM: protein of unknown function UPF0060; KEGG: rha:RHA1_ro06609 hypothetical protein; hypothetical protein 2975573..2975908 Nocardioides sp. JS614 4596281 YP_923995.1 CDS Noca_2806 NC_008699.1 2976006 2979563 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rha:RHA1_ro04958 bifunctional ABC multidrug transporter; ABC transporter-like protein complement(2976006..2979563) Nocardioides sp. JS614 4596282 YP_923996.1 CDS Noca_2807 NC_008699.1 2979617 2979796 R hypothetical protein complement(2979617..2979796) Nocardioides sp. JS614 4596283 YP_923997.1 CDS Noca_2808 NC_008699.1 2979986 2980387 D hypothetical protein 2979986..2980387 Nocardioides sp. JS614 4596284 YP_923998.1 CDS Noca_2809 NC_008699.1 2980523 2981290 D PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: fal:FRAAL3997 hypothetical protein; HNH endonuclease 2980523..2981290 Nocardioides sp. JS614 4596099 YP_923999.1 CDS Noca_2810 NC_008699.1 2981367 2981990 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: tbd:Tbd_1055 S-adenosylmethionine-dependent methyltransferase; type 12 methyltransferase 2981367..2981990 Nocardioides sp. JS614 4596100 YP_924000.1 CDS Noca_2811 NC_008699.1 2981997 2983295 R hypothetical protein complement(2981997..2983295) Nocardioides sp. JS614 4596101 YP_924001.1 CDS Noca_2812 NC_008699.1 2983409 2983906 R PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: nfa:nfa42140 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like protein complement(2983409..2983906) Nocardioides sp. JS614 4596102 YP_924002.1 CDS Noca_2813 NC_008699.1 2983910 2984665 R PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bur:Bcep18194_B1012 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(2983910..2984665) Nocardioides sp. JS614 4596103 YP_924003.1 CDS Noca_2814 NC_008699.1 2984662 2985591 R PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: nfa:nfa5340 putative short chain dehydrogenase; short-chain dehydrogenase/reductase SDR complement(2984662..2985591) Nocardioides sp. JS614 4596104 YP_924004.1 CDS Noca_2815 NC_008699.1 2985594 2985785 R KEGG: mmc:Mmcs_3697 hypothetical protein; hypothetical protein complement(2985594..2985785) Nocardioides sp. JS614 4596105 YP_924005.1 CDS Noca_2816 NC_008699.1 2985794 2986786 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: fal:FRAAL1022 putative thioredoxin reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(2985794..2986786) Nocardioides sp. JS614 4596106 YP_924006.1 CDS Noca_2817 NC_008699.1 2986850 2987536 R KEGG: sma:SAV5892 hypothetical protein; hypothetical protein complement(2986850..2987536) Nocardioides sp. JS614 4596107 YP_924007.1 CDS Noca_2818 NC_008699.1 2987536 2988066 R KEGG: sma:SAV5893 hypothetical protein; hypothetical protein complement(2987536..2988066) Nocardioides sp. JS614 4596108 YP_924008.1 CDS Noca_2819 NC_008699.1 2988063 2989331 R TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5894 putative secreted protein; virulence factor Mce family protein complement(2988063..2989331) Nocardioides sp. JS614 4596109 YP_924009.1 CDS Noca_2820 NC_008699.1 2989328 2990638 R TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5895 putative secreted protein; virulence factor Mce family protein complement(2989328..2990638) Nocardioides sp. JS614 4596110 YP_924010.1 CDS Noca_2821 NC_008699.1 2990635 2991849 R TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5896 mce-related protein; virulence factor Mce family protein complement(2990635..2991849) Nocardioides sp. JS614 4596111 YP_924011.1 CDS Noca_2822 NC_008699.1 2991846 2992835 R TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5897 putative secreted protein; virulence factor Mce family protein complement(2991846..2992835) Nocardioides sp. JS614 4596112 YP_924012.1 CDS Noca_2823 NC_008699.1 2992832 2993917 R TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: rha:RHA1_ro01970 possible Mce family protein; virulence factor Mce family protein complement(2992832..2993917) Nocardioides sp. JS614 4596113 YP_924013.1 CDS Noca_2824 NC_008699.1 2993917 2995227 R TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5899 mce-related protein; virulence factor Mce family protein complement(2993917..2995227) Nocardioides sp. JS614 4596114 YP_924014.1 CDS Noca_2825 NC_008699.1 2995235 2996074 R PFAM: protein of unknown function DUF140; KEGG: sma:SAV5900 hypothetical protein; hypothetical protein complement(2995235..2996074) Nocardioides sp. JS614 4596115 YP_924015.1 CDS Noca_2826 NC_008699.1 2996080 2996853 R PFAM: protein of unknown function DUF140; KEGG: sco:SCO2421 putative ABC-transporter integral membrane protein; hypothetical protein complement(2996080..2996853) Nocardioides sp. JS614 4596116 YP_924016.1 CDS Noca_2827 NC_008699.1 2996996 2997556 D PFAM: protein of unknown function DUF1707; KEGG: tfu:Tfu_0460 hypothetical protein; hypothetical protein 2996996..2997556 Nocardioides sp. JS614 4596117 YP_924017.1 CDS Noca_2828 NC_008699.1 2997650 2998345 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rha:RHA1_ro11203 response regulator, two-component system; response regulator receiver complement(2997650..2998345) Nocardioides sp. JS614 4596118 YP_924018.1 CDS Noca_2829 NC_008699.1 2998464 2999645 D PFAM: GAF domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: rha:RHA1_ro03573 anti-sigma factor, possible RsbU; GAF domain-containing protein 2998464..2999645 Nocardioides sp. JS614 4596119 YP_924019.1 CDS Noca_2830 NC_008699.1 2999614 3000303 R PFAM: phosphoesterase, PA-phosphatase related; KEGG: fal:FRAAL3944 hypothetical membrane protein; PA-phosphatase-like phosphoesterase complement(2999614..3000303) Nocardioides sp. JS614 4596120 YP_924020.1 CDS Noca_2831 NC_008699.1 3000326 3000880 R PFAM: Hemerythrin HHE cation binding domain protein; KEGG: eli:ELI_05015 hypothetical protein; hemerythrin HHE cation binding domain-containing protein complement(3000326..3000880) Nocardioides sp. JS614 4596121 YP_924021.1 CDS Noca_2832 NC_008699.1 3001007 3003016 D PFAM: glycosyl transferase, family 2; KEGG: rha:RHA1_ro03574 probable cellulose synthase catalytic subunit; cellulose synthase 3001007..3003016 Nocardioides sp. JS614 4596122 YP_924022.1 CDS Noca_2833 NC_008699.1 3003013 3003348 D TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rha:RHA1_ro03575 anti-sigma factor antagonist, possible RsbV; anti-anti-sigma factor 3003013..3003348 Nocardioides sp. JS614 4596123 YP_924023.1 CDS Noca_2834 NC_008699.1 3003341 3003793 D KEGG: mmc:Mmcs_0408 putative anti-sigma regulatory factor, serine/threonine protein kinase; putative anti-sigma regulatory factor 3003341..3003793 Nocardioides sp. JS614 4596124 YP_924024.1 CDS Noca_2835 NC_008699.1 3003803 3005089 R PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro05089 probable MFS transporter; major facilitator transporter complement(3003803..3005089) Nocardioides sp. JS614 4598434 YP_924025.1 CDS Noca_2836 NC_008699.1 3005214 3005651 R KEGG: sco:SCO2460 hypothetical protein; hypothetical protein complement(3005214..3005651) Nocardioides sp. JS614 4598435 YP_924026.1 CDS Noca_2837 NC_008699.1 3005648 3007768 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B complement(3005648..3007768) Nocardioides sp. JS614 4598436 YP_924027.1 CDS Noca_2838 NC_008699.1 3007823 3009082 D PFAM: phospholipase D/Transphosphatidylase; KEGG: tfu:Tfu_2817 phospholipase D/Transphosphatidylase; phospholipase D/transphosphatidylase 3007823..3009082 Nocardioides sp. JS614 4598437 YP_924028.1 CDS Noca_2839 NC_008699.1 3009126 3009689 R PFAM: Carboxymuconolactone decarboxylase; KEGG: nfa:nfa52610 hypothetical protein; carboxymuconolactone decarboxylase complement(3009126..3009689) Nocardioides sp. JS614 4598438 YP_924029.1 CDS Noca_2840 NC_008699.1 3009686 3010594 R PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: nfa:nfa26950 short chain dehydrogenase; short chain dehydrogenase complement(3009686..3010594) Nocardioides sp. JS614 4598439 YP_924030.1 CDS Noca_2841 NC_008699.1 3010600 3011541 R KEGG: nfa:nfa56060 hypothetical protein; hypothetical protein complement(3010600..3011541) Nocardioides sp. JS614 4598440 YP_924031.1 CDS Noca_2842 NC_008699.1 3011763 3012632 R PFAM: 5'-3' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2; KEGG: mmc:Mmcs_3011 DNA polymerase I; 5'-3' exonuclease complement(3011763..3012632) Nocardioides sp. JS614 4598441 YP_924032.1 CDS Noca_2843 NC_008699.1 3012759 3013775 R KEGG: dge:Dgeo_0459 hypothetical protein; hypothetical protein complement(3012759..3013775) Nocardioides sp. JS614 4598442 YP_924033.1 CDS Noca_2844 NC_008699.1 3013806 3014114 R hypothetical protein complement(3013806..3014114) Nocardioides sp. JS614 4598443 YP_924034.1 CDS ligB NC_008699.1 3014222 3015751 D catalyzes the ATP-dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; ATP-dependent DNA ligase 3014222..3015751 Nocardioides sp. JS614 4598444 YP_924035.1 CDS Noca_2846 NC_008699.1 3015837 3016520 D PFAM: regulatory protein, TetR; KEGG: mma:MM2546 hypothetical protein; regulatory protein TetR 3015837..3016520 Nocardioides sp. JS614 4598445 YP_924036.1 CDS Noca_2847 NC_008699.1 3016539 3017819 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(3016539..3017819) Nocardioides sp. JS614 4598446 YP_924037.1 CDS fabG NC_008699.1 3017917 3019251 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 3017917..3019251 Nocardioides sp. JS614 4598447 YP_924038.1 CDS Noca_2849 NC_008699.1 3019251 3020117 D PFAM: MaoC domain protein dehydratase; KEGG: abo:ABO_1719 MaoC domain protein, putative; dehydratase 3019251..3020117 Nocardioides sp. JS614 4598448 YP_924039.1 CDS Noca_2850 NC_008699.1 3020188 3021078 R PFAM: acyl-CoA thioesterase; KEGG: tfu:Tfu_0531 acyl-CoA thioesterase; palmitoyl-CoA hydrolase complement(3020188..3021078) Nocardioides sp. JS614 4598449 YP_924040.1 CDS Noca_2851 NC_008699.1 3021075 3021941 R PFAM: acyl-CoA thioesterase; KEGG: rha:RHA1_ro06887 acyl-CoA thioesterase II; palmitoyl-CoA hydrolase complement(3021075..3021941) Nocardioides sp. JS614 4598450 YP_924041.1 CDS Noca_2852 NC_008699.1 3021946 3022881 R PFAM: protein of unknown function DUF75; KEGG: mpa:MAP2831 hypothetical protein; hypothetical protein complement(3021946..3022881) Nocardioides sp. JS614 4598451 YP_924042.1 CDS Noca_2853 NC_008699.1 3022987 3024312 D KEGG: tfu:Tfu_1903 thiolase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; acetyl-CoA acetyltransferase 3022987..3024312 Nocardioides sp. JS614 4598452 YP_924043.1 CDS Noca_2854 NC_008699.1 3024309 3026399 D PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: tfu:Tfu_1904 fatty acid oxidation complex alpha-subunit; 3-hydroxyacyl-CoA dehydrogenase 3024309..3026399 Nocardioides sp. JS614 4598453 YP_924044.1 CDS Noca_2855 NC_008699.1 3026750 3028888 R KEGG: ade:Adeh_3529 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor signal transduction histidine kinase complement(3026750..3028888) Nocardioides sp. JS614 4598454 YP_924045.1 CDS Noca_2856 NC_008699.1 3029057 3030424 R KEGG: sth:STH1795 hypothetical protein; DNA primase-like protein complement(3029057..3030424) Nocardioides sp. JS614 4598455 YP_924046.1 CDS Noca_2857 NC_008699.1 3030421 3031935 R PFAM: amino acid permease-associated region; KEGG: rxy:Rxyl_2013 amino acid permease-associated region; amino acid permease-associated protein complement(3030421..3031935) Nocardioides sp. JS614 4598456 YP_924047.1 CDS Noca_2858 NC_008699.1 3031980 3033188 R KEGG: sco:SCO2134 hypothetical protein; hypothetical protein complement(3031980..3033188) Nocardioides sp. JS614 4598457 YP_924048.1 CDS Noca_2859 NC_008699.1 3033169 3035073 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(3033169..3035073) Nocardioides sp. JS614 4598458 YP_924049.1 CDS Noca_2860 NC_008699.1 3035093 3036016 R PFAM: Strictosidine synthase; SMP-30/Gluconolaconase/LRE domain protein; KEGG: mmc:Mmcs_1217 strictosidine synthase; strictosidine synthase complement(3035093..3036016) Nocardioides sp. JS614 4598459 YP_924050.1 CDS Noca_2861 NC_008699.1 3036201 3036629 R PFAM: NUDIX hydrolase; KEGG: mpa:MAP2711c hypothetical protein; NUDIX hydrolase complement(3036201..3036629) Nocardioides sp. JS614 4598460 YP_924051.1 CDS Noca_2862 NC_008699.1 3036699 3037688 D PFAM: glycoside hydrolase, family 18; SMART: chitinase II; KEGG: dsy:DSY4848 hypothetical protein; glycoside hydrolase family protein 3036699..3037688 Nocardioides sp. JS614 4598461 YP_924052.1 CDS Noca_2863 NC_008699.1 3037709 3041107 D PFAM: transcriptional regulator domain protein; transcriptional activator domain; KEGG: rha:RHA1_ro05028 probable transcriptional regulator; transcriptional activator domain-containing protein 3037709..3041107 Nocardioides sp. JS614 4598462 YP_924053.1 CDS Noca_2864 NC_008699.1 3041311 3043458 R PFAM: MMPL domain protein; KEGG: rha:RHA1_ro05027 membrane protein; MMPL domain-containing protein complement(3041311..3043458) Nocardioides sp. JS614 4598463 YP_924054.1 CDS Noca_2865 NC_008699.1 3043714 3044370 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mbo:Mb2593 probable glutamine-transport ATP-binding protein ABC transporter GlnQ; ABC transporter-like protein complement(3043714..3044370) Nocardioides sp. JS614 4598464 YP_924055.1 CDS Noca_2866 NC_008699.1 3044363 3045214 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO2674 ABC transporter ATP-binding protein; ABC transporter-like protein complement(3044363..3045214) Nocardioides sp. JS614 4598465 YP_924056.1 CDS Noca_2867 NC_008699.1 3045211 3048294 R PFAM: protein of unknown function DUF214; KEGG: fal:FRAAL5378 putative ABC transport system integral membrane protein; hypothetical protein complement(3045211..3048294) Nocardioides sp. JS614 4598466 YP_924057.1 CDS Noca_2868 NC_008699.1 3048791 3049033 D hypothetical protein 3048791..3049033 Nocardioides sp. JS614 4598467 YP_924058.1 CDS Noca_2869 NC_008699.1 3049136 3049339 R PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: tfu:Tfu_0384 cold shock protein; cold-shock DNA-binding protein family protein complement(3049136..3049339) Nocardioides sp. JS614 4598468 YP_924059.1 CDS Noca_2870 NC_008699.1 3049565 3049966 R PFAM: protein of unknown function UPF0047; KEGG: fra:Francci3_3056 protein of unknown function UPF0047; hypothetical protein complement(3049565..3049966) Nocardioides sp. JS614 4598469 YP_924060.1 CDS Noca_2871 NC_008699.1 3050190 3050573 R PFAM: protein of unknown function DUF77; KEGG: cdi:DIP1058 hypothetical protein; hypothetical protein complement(3050190..3050573) Nocardioides sp. JS614 4598470 YP_924061.1 CDS Noca_2872 NC_008699.1 3050610 3050927 D hypothetical protein 3050610..3050927 Nocardioides sp. JS614 4598471 YP_924062.1 CDS Noca_2873 NC_008699.1 3050908 3051423 R PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sma:SAV6340 RNA polymerase ECF-subfamily sigma factor; sigma-70 region 4 domain-containing protein complement(3050908..3051423) Nocardioides sp. JS614 4598472 YP_924063.1 CDS Noca_2874 NC_008699.1 3051410 3052723 R hypothetical protein complement(3051410..3052723) Nocardioides sp. JS614 4596323 YP_924064.1 CDS Noca_2875 NC_008699.1 3052921 3054219 D PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: mtc:MT3905 IS1557, transposase; transposase, IS204/IS1001/IS1096/IS1165 family protein 3052921..3054219 Nocardioides sp. JS614 4596324 YP_924065.1 CDS Noca_2876 NC_008699.1 3054292 3057108 R Catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(3054292..3057108) Nocardioides sp. JS614 4596325 YP_924066.1 CDS Noca_2877 NC_008699.1 3057380 3057790 R PFAM: DoxX family protein; KEGG: hma:rrnAC1471 terminal quinol oxidase subunit; DoxX family protein complement(3057380..3057790) Nocardioides sp. JS614 4596326 YP_924067.1 CDS cobN NC_008699.1 3058133 3061705 D with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism; cobaltochelatase subunit CobN 3058133..3061705 Nocardioides sp. JS614 4596327 YP_924068.1 CDS Noca_2879 NC_008699.1 3061702 3062421 D catalyzes the formation of precorrin 6x from precorrin 5; precorrin 6A synthase 3061702..3062421 Nocardioides sp. JS614 4596328 YP_924069.1 CDS Noca_2880 NC_008699.1 3062418 3063848 D catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 3062418..3063848 Nocardioides sp. JS614 4596329 YP_924070.1 CDS Noca_2881 NC_008699.1 3063845 3064576 D KEGG: tfu:Tfu_0310 precorrin-6x reductase CbiJ/CobK; TIGRFAM: precorrin-6x reductase; PFAM: Precorrin-6x reductase CbiJ/CobK; precorrin-6A reductase 3063845..3064576 Nocardioides sp. JS614 4596330 YP_924071.1 CDS Noca_2882 NC_008699.1 3064581 3065462 R KEGG: sma:SAV2049 hypothetical protein; hypothetical protein complement(3064581..3065462) Nocardioides sp. JS614 4596331 YP_924072.1 CDS Noca_2883 NC_008699.1 3065534 3065752 R KEGG: rpc:RPC_2504 hypothetical protein; hypothetical protein complement(3065534..3065752) Nocardioides sp. JS614 4596332 YP_924073.1 CDS Noca_2884 NC_008699.1 3065945 3066625 R KEGG: pac:PPA0659 conserved protein, putative NADH:ubiquinone oxidoreductase; hypothetical protein complement(3065945..3066625) Nocardioides sp. JS614 4596333 YP_924074.1 CDS Noca_2885 NC_008699.1 3066622 3067497 R TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: sco:SCO1847 cobalamin biosynthesis protein; adenosylcobinamide-phosphate synthase complement(3066622..3067497) Nocardioides sp. JS614 4596334 YP_924075.1 CDS Noca_2886 NC_008699.1 3067553 3068593 R PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; KEGG: nfa:nfa17000 putative nicotinate-nucleotide- dimethylbenzimidazole phosphoribosyltransferase; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase complement(3067553..3068593) Nocardioides sp. JS614 4596335 YP_924076.1 CDS Noca_2887 NC_008699.1 3068607 3071018 R TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid a,c-diamide synthase; aminotransferase, class I and II; CobB/CobQ domain protein glutamine amidotransferase; KEGG: pac:PPA0438 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase complement(3068607..3071018) Nocardioides sp. JS614 4596336 YP_924077.1 CDS Noca_2888 NC_008699.1 3071036 3071650 R catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase complement(3071036..3071650) Nocardioides sp. JS614 4596337 YP_924078.1 CDS Noca_2889 NC_008699.1 3071650 3073611 R KEGG: tfu:Tfu_0313 Mg-chelatase subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; von Willebrand factor, type A; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; protoporphyrin IX magnesium-chelatase complement(3071650..3073611) Nocardioides sp. JS614 4596338 YP_924079.1 CDS Noca_2890 NC_008699.1 3073846 3075042 D KEGG: tfu:Tfu_0314 SAM (and some other nucleotide) binding motif; TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-6Y C5,15-methyltransferase 3073846..3075042 Nocardioides sp. JS614 4596339 YP_924080.1 CDS Noca_2891 NC_008699.1 3075011 3075796 R TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: nfa:nfa50340 putative methyltransferase; precorrin-4 C(11)-methyltransferase complement(3075011..3075796) Nocardioides sp. JS614 4596340 YP_924081.1 CDS Noca_2892 NC_008699.1 3075793 3077316 R TIGRFAM: precorrin-3B C17-methyltransferase; precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: tfu:Tfu_0316 precorrin-3B C17-methyltransferase region:precorrin-2 C20-methyltransferase; precorrin-3 methyltransferase / precorrin-2 C20-methyltransferase complement(3075793..3077316) Nocardioides sp. JS614 4596341 YP_924082.1 CDS Noca_2893 NC_008699.1 3077313 3077975 R PFAM: Precorrin-8X methylmutase CbiC/CobH; KEGG: tfu:Tfu_0317 precorrin-8X methylmutase; precorrin-8X methylmutase complement(3077313..3077975) Nocardioides sp. JS614 4596342 YP_924083.1 CDS Noca_2894 NC_008699.1 3077972 3078820 R PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; KEGG: tfu:Tfu_0318 cobalamin biosynthesis protein CobG, precorrin-3B synthase; nitrite/sulfite reductase hemoprotein subunit beta complement(3077972..3078820) Nocardioides sp. JS614 4596343 YP_924084.1 CDS Noca_2895 NC_008699.1 3079217 3080836 D TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rba:RB12326 sensory histidine protein kinase; GAF sensor signal transduction histidine kinase 3079217..3080836 Nocardioides sp. JS614 4596344 YP_924085.1 CDS Noca_2896 NC_008699.1 3081193 3081459 D PFAM: CopG domain protein DNA-binding domain protein; KEGG: rha:RHA1_ro03198 hypothetical protein; CopG/DNA-binding domain-containing protein 3081193..3081459 Nocardioides sp. JS614 4596345 YP_924086.1 CDS Noca_2897 NC_008699.1 3081450 3081692 R hypothetical protein complement(3081450..3081692) Nocardioides sp. JS614 4596346 YP_924087.1 CDS Noca_2898 NC_008699.1 3081849 3082298 R KEGG: rha:RHA1_ro00918 hypothetical protein; hypothetical protein complement(3081849..3082298) Nocardioides sp. JS614 4596347 YP_924088.1 CDS Noca_2899 NC_008699.1 3082720 3083442 R hypothetical protein complement(3082720..3083442) Nocardioides sp. JS614 4596348 YP_924089.1 CDS Noca_2900 NC_008699.1 3083439 3084212 R hypothetical protein complement(3083439..3084212) Nocardioides sp. JS614 4596349 YP_924090.1 CDS Noca_2901 NC_008699.1 3084276 3085517 R PFAM: deoxyribonuclease/rho motif-related TRAM; KEGG: sma:SAV2389 putative RNA methyltransferase; deoxyribonuclease complement(3084276..3085517) Nocardioides sp. JS614 4596350 YP_924091.1 CDS Noca_2902 NC_008699.1 3085514 3087571 R KEGG: nfa:nfa37450 putative transporter; putative transporter complement(3085514..3087571) Nocardioides sp. JS614 4596351 YP_924092.1 CDS Noca_2903 NC_008699.1 3087610 3088272 D PFAM: TrkA-N domain protein; KEGG: sma:SAV2391 putative potassium transporter; TrkA domain-containing protein 3087610..3088272 Nocardioides sp. JS614 4596352 YP_924093.1 CDS Noca_2904 NC_008699.1 3088280 3088951 D PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: pac:PPA1057 Trk system potassium uptake protein; TrkA domain-containing protein 3088280..3088951 Nocardioides sp. JS614 4596353 YP_924094.1 CDS Noca_2905 NC_008699.1 3088956 3089672 R KEGG: tfu:Tfu_1932 hypothetical protein; hypothetical protein complement(3088956..3089672) Nocardioides sp. JS614 4596354 YP_924095.1 CDS Noca_2906 NC_008699.1 3089669 3090031 R PFAM: nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: sma:SAV2394 hypothetical protein; OB-fold, tRNA/helicase-type nucleic acid binding protein complement(3089669..3090031) Nocardioides sp. JS614 4596355 YP_924096.1 CDS Noca_2907 NC_008699.1 3090041 3090682 R KEGG: fra:Francci3_1319 conserved hypothetical protein; hypothetical protein complement(3090041..3090682) Nocardioides sp. JS614 4596356 YP_924097.1 CDS Noca_2908 NC_008699.1 3090702 3091148 R KEGG: tfu:Tfu_1935 deoxyUTP pyrophosphatase subfamily 1; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase; deoxyuridine 5'-triphosphate nucleotidohydrolase complement(3090702..3091148) Nocardioides sp. JS614 4596357 YP_924098.1 CDS Noca_2909 NC_008699.1 3091202 3091663 D KEGG: sma:SAV2401 secreted protein; secreted protein 3091202..3091663 Nocardioides sp. JS614 4596358 YP_924099.1 CDS Noca_2910 NC_008699.1 3091705 3092001 D KEGG: fra:Francci3_1317 hypothetical protein; hypothetical protein 3091705..3092001 Nocardioides sp. JS614 4596359 YP_924100.1 CDS Noca_2911 NC_008699.1 3092021 3092311 R KEGG: sma:SAV2403 hypothetical protein; hypothetical protein complement(3092021..3092311) Nocardioides sp. JS614 4597412 YP_924101.1 CDS Noca_2912 NC_008699.1 3092482 3093360 R PFAM: inositol monophosphatase; KEGG: sco:SCO5860 SuhB protein; inositol-phosphate phosphatase complement(3092482..3093360) Nocardioides sp. JS614 4597413 YP_924102.1 CDS hemH NC_008699.1 3093357 3094457 R protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase complement(3093357..3094457) Nocardioides sp. JS614 4597414 YP_924103.1 CDS Noca_2914 NC_008699.1 3094527 3095717 D PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV2408 transmembrane efflux protein; major facilitator transporter 3094527..3095717 Nocardioides sp. JS614 4597415 YP_924104.1 CDS Noca_2915 NC_008699.1 3095854 3096489 R PFAM: protein of unknown function UPF0126; KEGG: nmu:Nmul_A0854 hypothetical protein; hypothetical protein complement(3095854..3096489) Nocardioides sp. JS614 4597416 YP_924105.1 CDS Noca_2916 NC_008699.1 3096613 3097569 D KEGG: sma:SAV2411 DNA-binding protein; DNA-binding protein 3096613..3097569 Nocardioides sp. JS614 4597417 YP_924106.1 CDS Noca_2917 NC_008699.1 3097623 3099620 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; KR; KEGG: hch:HCH_04995 short-chain alcohol dehydrogenase-like protein; short chain dehydrogenase 3097623..3099620 Nocardioides sp. JS614 4597418 YP_924107.1 CDS Noca_2918 NC_008699.1 3099645 3100475 R PFAM: Rhodanese domain protein; KEGG: nfa:nfa10240 putative thiosulfate sulfurtransferase; thiosulfate sulfurtransferase complement(3099645..3100475) Nocardioides sp. JS614 4597419 YP_924108.1 CDS Noca_2919 NC_008699.1 3100519 3101172 D catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 3100519..3101172 Nocardioides sp. JS614 4597420 YP_924109.1 CDS Noca_2920 NC_008699.1 3101114 3102130 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: nfa:pnf1290 hypothetical protein; hypothetical protein complement(3101114..3102130) Nocardioides sp. JS614 4597421 YP_924110.1 CDS Noca_2921 NC_008699.1 3102138 3102419 R PFAM: protein of unknown function DUF156; KEGG: rha:RHA1_ro03538 hypothetical protein; hypothetical protein complement(3102138..3102419) Nocardioides sp. JS614 4597422 YP_924111.1 CDS Noca_2922 NC_008699.1 3102500 3105286 R KEGG: atc:AGR_C_1708 copper-transporting ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein; copper-translocating P-type ATPase complement(3102500..3105286) Nocardioides sp. JS614 4597423 YP_924112.1 CDS Noca_2923 NC_008699.1 3105532 3105780 D KEGG: ath:At2g05440_1 glycine-rich protein; hypothetical protein 3105532..3105780 Nocardioides sp. JS614 4597424 YP_924113.1 CDS Noca_2924 NC_008699.1 3105802 3106053 D hypothetical protein 3105802..3106053 Nocardioides sp. JS614 4597425 YP_924114.1 CDS Noca_2925 NC_008699.1 3106450 3108060 R PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: nfa:pnf1230 putative multicopper oxidase; multicopper oxidase, type 3 complement(3106450..3108060) Nocardioides sp. JS614 4597426 YP_924115.1 CDS Noca_2926 NC_008699.1 3108057 3108356 R KEGG: rha:RHA1_ro11202 hypothetical protein; hypothetical protein complement(3108057..3108356) Nocardioides sp. JS614 4597427 YP_924116.1 CDS Noca_2927 NC_008699.1 3108483 3108818 R PFAM: regulatory protein, ArsR; KEGG: rha:RHA1_ro11232 probable transcriptional regulator, ArsR family; ArsR family transcriptional regulator complement(3108483..3108818) Nocardioides sp. JS614 4597428 YP_924117.1 CDS Noca_2928 NC_008699.1 3108873 3109196 R KEGG: rha:RHA1_ro11231 hypothetical protein; hypothetical protein complement(3108873..3109196) Nocardioides sp. JS614 4597429 YP_924118.1 CDS Noca_2929 NC_008699.1 3109196 3109588 R PFAM: protein of unknown function DUF202; KEGG: rha:RHA1_ro11230 hypothetical protein; hypothetical protein complement(3109196..3109588) Nocardioides sp. JS614 4597430 YP_924119.1 CDS Noca_2930 NC_008699.1 3109588 3110724 R PFAM: beta-lactamase domain protein; SMART: Rhodanese domain protein; KEGG: rha:RHA1_ro11229 possible hydroxyacylglutathione hydrolase; beta-lactamase domain-containing protein complement(3109588..3110724) Nocardioides sp. JS614 4597431 YP_924120.1 CDS Noca_2931 NC_008699.1 3110851 3111351 D KEGG: rha:RHA1_ro11228 possible NADH dehydrogenase; putative NADH dehydrogenase 3110851..3111351 Nocardioides sp. JS614 4597432 YP_924121.1 CDS Noca_2932 NC_008699.1 3111383 3111616 D PFAM: SirA family protein; KEGG: rha:RHA1_ro11227 hypothetical protein; SirA family protein 3111383..3111616 Nocardioides sp. JS614 4597433 YP_924122.1 CDS Noca_2933 NC_008699.1 3111624 3113141 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Polysulphide reductase, NrfD; KEGG: rha:RHA1_ro11226 probable polysulphide reductase; 4Fe-4S ferredoxin 3111624..3113141 Nocardioides sp. JS614 4597434 YP_924123.1 CDS Noca_2934 NC_008699.1 3113138 3115999 D PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: rha:RHA1_ro11225 hypothetical protein; formate dehydrogenase 3113138..3115999 Nocardioides sp. JS614 4597435 YP_924124.1 CDS Noca_2935 NC_008699.1 3115996 3117129 D PFAM: protein of unknown function DUF59; KEGG: rha:RHA1_ro11224 possible ATPase; hypothetical protein 3115996..3117129 Nocardioides sp. JS614 4597436 YP_924125.1 CDS Noca_2936 NC_008699.1 3117134 3118660 D PFAM: Sulfate transporter/antisigma-factor antagonist STAS; sulphate transporter; KEGG: aeh:Mlg_1668 sulfate transporter; sulfate transporter 3117134..3118660 Nocardioides sp. JS614 4597437 YP_924126.1 CDS Noca_2937 NC_008699.1 3118667 3120025 R PFAM: beta-lactamase domain protein; SMART: Rhodanese domain protein; KEGG: rha:RHA1_ro11243 hypothetical protein; beta-lactamase domain-containing protein complement(3118667..3120025) Nocardioides sp. JS614 4597438 YP_924127.1 CDS Noca_2938 NC_008699.1 3120118 3121203 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: cef:CE0279 putative sensor kinase; ATPase domain-containing protein complement(3120118..3121203) Nocardioides sp. JS614 4597439 YP_924128.1 CDS Noca_2939 NC_008699.1 3121200 3121898 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sth:STH750 two-component response regulator, probably involved in phosphate sensing; response regulator receiver complement(3121200..3121898) Nocardioides sp. JS614 4597440 YP_924129.1 CDS Noca_2940 NC_008699.1 3121936 3122448 R KEGG: chy:CHY_1866 hypothetical protein; hypothetical protein complement(3121936..3122448) Nocardioides sp. JS614 4597441 YP_924130.1 CDS Noca_2941 NC_008699.1 3122610 3123842 D hypothetical protein 3122610..3123842 Nocardioides sp. JS614 4597442 YP_924131.1 CDS Noca_2942 NC_008699.1 3123811 3125268 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; PAS fold domain protein; KEGG: dge:Dgeo_0556 multi-sensor signal transduction histidine kinase; ATPase domain-containing protein complement(3123811..3125268) Nocardioides sp. JS614 4597443 YP_924132.1 CDS Noca_2943 NC_008699.1 3125279 3125926 R PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: dra:DR0987 DNA-binding response regulator; two component LuxR family transcriptional regulator complement(3125279..3125926) Nocardioides sp. JS614 4597444 YP_924133.1 CDS Noca_2944 NC_008699.1 3126746 3127774 D PFAM: Cytochrome b/b6, N-terminal domain; KEGG: oih:OB1775 menaquinol-cytochrome-c reductase cytochrome b subunit; cytochrome b/b6 domain-containing protein 3126746..3127774 Nocardioides sp. JS614 4597445 YP_924134.1 CDS Noca_2945 NC_008699.1 3128050 3129168 R PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: tfu:Tfu_2126 hypothetical protein; type I phosphodiesterase/nucleotide pyrophosphatase complement(3128050..3129168) Nocardioides sp. JS614 4597446 YP_924135.1 CDS Noca_2946 NC_008699.1 3129165 3129761 R KEGG: sco:SCO5843 hypothetical protein; hypothetical protein complement(3129165..3129761) Nocardioides sp. JS614 4597447 YP_924136.1 CDS Noca_2947 NC_008699.1 3129808 3130434 R KEGG: sme:SMb20814 hypothetical protein; hypothetical protein complement(3129808..3130434) Nocardioides sp. JS614 4595731 YP_924137.1 CDS Noca_2948 NC_008699.1 3130467 3133166 R PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: tfu:Tfu_2128 hypothetical protein; CoA-binding domain-containing protein complement(3130467..3133166) Nocardioides sp. JS614 4595732 YP_924138.1 CDS Noca_2949 NC_008699.1 3133283 3135763 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 3133283..3135763 Nocardioides sp. JS614 4595733 YP_924139.1 CDS Noca_2950 NC_008699.1 3135768 3136466 D KEGG: rha:RHA1_ro08664 possible lipoprotein; hypothetical protein 3135768..3136466 Nocardioides sp. JS614 4595734 YP_924140.1 CDS Noca_2951 NC_008699.1 3136463 3138217 D PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro08665 probable multidrug resistance transporter, MFS superfamily; major facilitator transporter 3136463..3138217 Nocardioides sp. JS614 4595735 YP_924141.1 CDS Noca_2952 NC_008699.1 3138239 3138739 D PFAM: carbonic anhydrase; KEGG: tfu:Tfu_2132 carbonic anhydrase, putative; carbonic anhydrase 3138239..3138739 Nocardioides sp. JS614 4595736 YP_924142.1 CDS Noca_2953 NC_008699.1 3138749 3139957 R TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: lxx:Lxx03420 acetate kinase; acetate kinase complement(3138749..3139957) Nocardioides sp. JS614 4595737 YP_924143.1 CDS Noca_2954 NC_008699.1 3139954 3142044 R catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase complement(3139954..3142044) Nocardioides sp. JS614 4595738 YP_924144.1 CDS Noca_2955 NC_008699.1 3142137 3142490 R TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: sco:SCO7046 putative integral membrane protein; camphor resistance protein CrcB complement(3142137..3142490) Nocardioides sp. JS614 4595739 YP_924145.1 CDS Noca_2956 NC_008699.1 3142505 3142891 R PFAM: protein of unknown function DUF190; KEGG: sco:SCO7045 hypothetical protein; hypothetical protein complement(3142505..3142891) Nocardioides sp. JS614 4595740 YP_924146.1 CDS Noca_2957 NC_008699.1 3142888 3143400 R TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: sma:SAV1322 putative integral membrane protein; camphor resistance protein CrcB complement(3142888..3143400) Nocardioides sp. JS614 4595741 YP_924147.1 CDS Noca_2958 NC_008699.1 3143447 3145579 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(3143447..3145579) Nocardioides sp. JS614 4595742 YP_924148.1 CDS Noca_2959 NC_008699.1 3145885 3146118 D KEGG: tfu:Tfu_2135 hypothetical protein; hypothetical protein 3145885..3146118 Nocardioides sp. JS614 4595743 YP_924149.1 CDS Noca_2960 NC_008699.1 3146208 3146684 D KEGG: nfa:nfa53640 hypothetical protein; hypothetical protein 3146208..3146684 Nocardioides sp. JS614 4595744 YP_924150.1 CDS Noca_2961 NC_008699.1 3146684 3147511 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: rha:RHA1_ro06410 hypothetical protein; hypothetical protein 3146684..3147511 Nocardioides sp. JS614 4595745 YP_924151.1 CDS Noca_2962 NC_008699.1 3147556 3148275 D hypothetical protein 3147556..3148275 Nocardioides sp. JS614 4595746 YP_924152.1 CDS Noca_2963 NC_008699.1 3148288 3149775 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; RNA polymerase sigma factor complement(3148288..3149775) Nocardioides sp. JS614 4595747 YP_924153.1 CDS Noca_2964 NC_008699.1 3150053 3150619 R PFAM: HhH-GPD family protein; KEGG: mbo:Mb1187 hypothetical protein; HhH-GPD family protein complement(3150053..3150619) Nocardioides sp. JS614 4595748 YP_924154.1 CDS Noca_2965 NC_008699.1 3150674 3151252 D PFAM: regulatory protein, TetR; KEGG: fal:FRAAL4786 putative transcriptional regulator; regulatory protein TetR 3150674..3151252 Nocardioides sp. JS614 4595749 YP_924155.1 CDS Noca_2966 NC_008699.1 3151249 3152475 D TIGRFAM: glycosyltransferase, MGT family; PFAM: UDP-glucuronosyl/UDP-glucosyltransferase; glycosyl transferase, family 28; Glycosyltransferase 28, C-terminal domain; KEGG: mmc:Mmcs_1269 glycosyltransferase, MGT family; glycosyl transferase family protein 3151249..3152475 Nocardioides sp. JS614 4595750 YP_924156.1 CDS Noca_2967 NC_008699.1 3152502 3152903 R PFAM: UspA domain protein; KEGG: rfr:Rfer_0629 UspA; UspA domain-containing protein complement(3152502..3152903) Nocardioides sp. JS614 4595751 YP_924157.1 CDS Noca_2968 NC_008699.1 3153047 3153469 D hypothetical protein 3153047..3153469 Nocardioides sp. JS614 4595752 YP_924158.1 CDS Noca_2969 NC_008699.1 3153489 3154952 R PFAM: glutamate--cysteine ligase, GCS2; KEGG: sco:SCO7509 hypothetical protein; glutamate--cysteine ligase complement(3153489..3154952) Nocardioides sp. JS614 4595753 YP_924159.1 CDS Noca_2970 NC_008699.1 3154962 3156110 R TIGRFAM: uncharacterized enzyme; PFAM: glutamate--cysteine ligase, GCS2; KEGG: sco:SCO7331 hypothetical protein; hypothetical protein complement(3154962..3156110) Nocardioides sp. JS614 4595754 YP_924160.1 CDS Noca_2971 NC_008699.1 3156281 3157129 R KEGG: tfu:Tfu_2217 hypothetical protein; hypothetical protein complement(3156281..3157129) Nocardioides sp. JS614 4595755 YP_924161.1 CDS Noca_2972 NC_008699.1 3157226 3158461 D PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: fra:Francci3_3532 phage integrase; phage integrase family protein 3157226..3158461 Nocardioides sp. JS614 4595610 YP_924162.1 CDS Noca_2973 NC_008699.1 3158470 3160863 D PFAM: phage integrase family protein; KEGG: rha:RHA1_ro10276 possible DNA integrase/recombinase; phage integrase family protein 3158470..3160863 Nocardioides sp. JS614 4595611 YP_924163.1 CDS Noca_2974 NC_008699.1 3161348 3161704 D hypothetical protein 3161348..3161704 Nocardioides sp. JS614 4595612 YP_924164.1 CDS Noca_2975 NC_008699.1 3162200 3163531 D involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 3162200..3163531 Nocardioides sp. JS614 4595613 YP_924165.1 CDS Noca_2976 NC_008699.1 3163476 3164372 R TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: sma:SAV6937 antagonist of KipI; urea amidolyase-like protein complement(3163476..3164372) Nocardioides sp. JS614 4595614 YP_924166.1 CDS Noca_2977 NC_008699.1 3164369 3164980 R PFAM: Allophanate hydrolase subunit 1; KEGG: sma:SAV6938 inhibitor of KinA; allophanate hydrolase subunit 1 complement(3164369..3164980) Nocardioides sp. JS614 4595615 YP_924167.1 CDS Noca_2978 NC_008699.1 3165346 3166041 R PFAM: LamB/YcsF family protein; KEGG: sma:SAV6939 putative lactam utilization protein; LamB/YcsF family protein complement(3165346..3166041) Nocardioides sp. JS614 4595616 YP_924168.1 CDS Noca_2979 NC_008699.1 3166065 3168245 D PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller; KEGG: nfa:nfa5630 putative protease; oligopeptidase B 3166065..3168245 Nocardioides sp. JS614 4595617 YP_924169.1 CDS Noca_2980 NC_008699.1 3168409 3169368 D PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: pac:PPA1031 RNA polymerase principal sigma factor HrdD; sigma-70 region 3 domain-containing protein 3168409..3169368 Nocardioides sp. JS614 4595618 YP_924170.1 CDS Noca_2981 NC_008699.1 3169382 3169972 R KEGG: sco:SCO1996 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; dephospho-CoA kinase complement(3169382..3169972) Nocardioides sp. JS614 4595619 YP_924171.1 CDS Noca_2982 NC_008699.1 3170008 3170412 R hypothetical protein complement(3170008..3170412) Nocardioides sp. JS614 4595620 YP_924172.1 CDS Noca_2983 NC_008699.1 3170458 3172794 R KEGG: ade:Adeh_2705 response regulator receiver; hypothetical protein complement(3170458..3172794) Nocardioides sp. JS614 4595621 YP_924173.1 CDS Noca_2984 NC_008699.1 3172990 3174627 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: aba:Acid345_1672 methyl-accepting chemotaxis sensory transducer; chemotaxis sensory transducer protein 3172990..3174627 Nocardioides sp. JS614 4595622 YP_924174.1 CDS Noca_2985 NC_008699.1 3174624 3175598 R PFAM: NAD-dependent epimerase/dehydratase; KEGG: fal:FRAAL1787 hypothetical protein; NAD-dependent epimerase/dehydratase complement(3174624..3175598) Nocardioides sp. JS614 4595623 YP_924175.1 CDS Noca_2986 NC_008699.1 3175710 3176435 D PFAM: regulatory protein, TetR; KEGG: sma:SAV1468 TetR-family transcriptional regulator; regulatory protein TetR 3175710..3176435 Nocardioides sp. JS614 4595624 YP_924176.1 CDS Noca_2987 NC_008699.1 3176432 3177733 D PFAM: AMP-dependent synthetase and ligase; KEGG: fal:FRAAL1640 putative acyl-CoA synthetase, long-chain fatty acid:CoA ligase; AMP-dependent synthetase and ligase 3176432..3177733 Nocardioides sp. JS614 4595625 YP_924177.1 CDS Noca_2988 NC_008699.1 3177792 3178736 R PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; KEGG: sma:SAV3030 AraC-family transcriptional regulator; transcriptional regulator complement(3177792..3178736) Nocardioides sp. JS614 4595626 YP_924178.1 CDS rpsA NC_008699.1 3179063 3180535 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(3179063..3180535) Nocardioides sp. JS614 4595627 YP_924179.1 CDS Noca_2990 NC_008699.1 3180748 3181557 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: tfu:Tfu_0150 hypothetical protein; type 11 methyltransferase 3180748..3181557 Nocardioides sp. JS614 4595628 YP_924180.1 CDS Noca_2991 NC_008699.1 3181587 3182549 R KEGG: rha:RHA1_ro05190 hypothetical protein; hypothetical protein complement(3181587..3182549) Nocardioides sp. JS614 4595629 YP_924181.1 CDS Noca_2992 NC_008699.1 3182625 3183314 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sus:Acid_4357 methyltransferase type 11; type 11 methyltransferase 3182625..3183314 Nocardioides sp. JS614 4595630 YP_924182.1 CDS Noca_2993 NC_008699.1 3183339 3184379 R PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: aba:Acid345_3613 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(3183339..3184379) Nocardioides sp. JS614 4595631 YP_924183.1 CDS Noca_2994 NC_008699.1 3184376 3185146 R PFAM: glycosyl transferase, family 2; KEGG: ava:Ava_3351 glycosyl transferase, family 2; glycosyl transferase family protein complement(3184376..3185146) Nocardioides sp. JS614 4595632 YP_924184.1 CDS Noca_2995 NC_008699.1 3185143 3186342 R PFAM: UDP-glucose/GDP-mannose dehydrogenase; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: pfu:PF1631 NDP-sugar dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase complement(3185143..3186342) Nocardioides sp. JS614 4595633 YP_924185.1 CDS Noca_2996 NC_008699.1 3186471 3188303 D KEGG: nfa:nfa24300 hypothetical protein; hypothetical protein 3186471..3188303 Nocardioides sp. JS614 4595634 YP_924186.1 CDS Noca_2997 NC_008699.1 3188300 3189529 D PFAM: acyltransferase 3; KEGG: cef:CE2680 hypothetical protein; acyltransferase 3 3188300..3189529 Nocardioides sp. JS614 4595635 YP_924187.1 CDS Noca_2998 NC_008699.1 3189427 3193455 R KEGG: nfa:nfa54700 hypothetical protein; hypothetical protein complement(3189427..3193455) Nocardioides sp. JS614 4595636 YP_924188.1 CDS Noca_2999 NC_008699.1 3193539 3194279 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: tfu:Tfu_2465 hypothetical protein; type 11 methyltransferase complement(3193539..3194279) Nocardioides sp. JS614 4595637 YP_924189.1 CDS Noca_3000 NC_008699.1 3194319 3195473 D PFAM: glycosyl transferase, group 1; KEGG: rha:RHA1_ro05187 possible glycosyl transferase; group 1 glycosyl transferase 3194319..3195473 Nocardioides sp. JS614 4595638 YP_924190.1 CDS Noca_3001 NC_008699.1 3195670 3197337 R KEGG: tfu:Tfu_2469 hypothetical protein; hypothetical protein complement(3195670..3197337) Nocardioides sp. JS614 4595639 YP_924191.1 CDS Noca_3002 NC_008699.1 3197391 3198698 D PFAM: polysaccharide biosynthesis protein; KEGG: rha:RHA1_ro05189 possible xylose transporter; polysaccharide biosynthesis protein 3197391..3198698 Nocardioides sp. JS614 4595640 YP_924192.1 CDS Noca_3003 NC_008699.1 3198661 3200469 R PFAM: glycoside hydrolase 15-related; KEGG: sco:SCO1830 hypothetical protein; glycoside hydrolase 15-like protein complement(3198661..3200469) Nocardioides sp. JS614 4595641 YP_924193.1 CDS Noca_3004 NC_008699.1 3200493 3200975 R KEGG: ade:Adeh_3192 hypothetical protein; hypothetical protein complement(3200493..3200975) Nocardioides sp. JS614 4595642 YP_924194.1 CDS Noca_3005 NC_008699.1 3201060 3202076 R PFAM: luciferase family protein; KEGG: mlo:mll2315 alkanal monooxygenase (bacterial liciferase alpha chain) like protein; luciferase family protein complement(3201060..3202076) Nocardioides sp. JS614 4596452 YP_924195.1 CDS Noca_3006 NC_008699.1 3202076 3204745 R KEGG: nfa:nfa18750 putative DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2; DNA polymerase I complement(3202076..3204745) Nocardioides sp. JS614 4596453 YP_924196.1 CDS Noca_3007 NC_008699.1 3204788 3205255 D TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: sma:SAV6225 hypothetical protein; hypothetical protein 3204788..3205255 Nocardioides sp. JS614 4596454 YP_924197.1 CDS Noca_3008 NC_008699.1 3205263 3205838 R PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(3205263..3205838) Nocardioides sp. JS614 4596455 YP_924198.1 CDS Noca_3009 NC_008699.1 3205949 3206695 D PFAM: protein of unknown function DUF554; KEGG: tfu:Tfu_1187 conserved hypothetical protein; hypothetical protein 3205949..3206695 Nocardioides sp. JS614 4596456 YP_924199.1 CDS Noca_3010 NC_008699.1 3206705 3207589 D PFAM: extracellular solute-binding protein, family 3; SMART: ionotropic glutamate receptor; KEGG: sma:SAV6400 putative ABC transporter substrate-binding protein; extracellular solute-binding protein 3206705..3207589 Nocardioides sp. JS614 4596457 YP_924200.1 CDS Noca_3011 NC_008699.1 3207586 3208380 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV6401 putative ABC transporter permease protein; polar amino acid ABC transporter, inner membrane subunit 3207586..3208380 Nocardioides sp. JS614 4596458 YP_924201.1 CDS Noca_3012 NC_008699.1 3208377 3209111 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV6402 putative ABC transporter ATP-binding protein; ABC transporter-like protein 3208377..3209111 Nocardioides sp. JS614 4596459 YP_924202.1 CDS Noca_3013 NC_008699.1 3209209 3210711 D PFAM: inner-membrane translocator; KEGG: tfu:Tfu_1182 branched-chain amino acid ABC-type transport system permease components; inner-membrane translocator 3209209..3210711 Nocardioides sp. JS614 4596460 YP_924203.1 CDS Noca_3014 NC_008699.1 3210722 3211714 D PFAM: inner-membrane translocator; KEGG: tfu:Tfu_1183 branched-chain amino acid transport system permease protein; inner-membrane translocator 3210722..3211714 Nocardioides sp. JS614 4596461 YP_924204.1 CDS Noca_3015 NC_008699.1 3211704 3212687 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rha:RHA1_ro00993 ABC branched-chain amino acid transporter, ATP-binding component; ABC transporter-like protein 3211704..3212687 Nocardioides sp. JS614 4596462 YP_924205.1 CDS Noca_3016 NC_008699.1 3212680 3213462 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rha:RHA1_ro00994 ABC branched-chain amino acid transport, ATP-binding component; ABC transporter-like protein 3212680..3213462 Nocardioides sp. JS614 4596463 YP_924206.1 CDS Noca_3017 NC_008699.1 3213538 3214818 R PFAM: Extracellular ligand-binding receptor; KEGG: rha:RHA1_ro00995 probable branched-chain amino acid ABC transporter binding protein; extracellular ligand-binding receptor complement(3213538..3214818) Nocardioides sp. JS614 4596464 YP_924207.1 CDS Noca_3018 NC_008699.1 3215009 3215632 R PFAM: response regulator receiver; ANTAR domain protein; KEGG: tfu:Tfu_1181 response regulator receiver; response regulator receiver complement(3215009..3215632) Nocardioides sp. JS614 4596465 YP_924208.1 CDS Noca_3019 NC_008699.1 3215815 3216549 D KEGG: sma:SAV6218 hypothetical protein; hypothetical protein 3215815..3216549 Nocardioides sp. JS614 4596467 YP_924209.1 CDS Noca_3020 NC_008699.1 3216553 3218016 R PFAM: pyruvate kinase; KEGG: sma:SAV6217 putative pyruvate kinase; pyruvate kinase complement(3216553..3218016) Nocardioides sp. JS614 4596468 YP_924210.1 CDS gltD NC_008699.1 3218119 3219600 R glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta complement(3218119..3219600) Nocardioides sp. JS614 4596469 YP_924211.1 CDS Noca_3022 NC_008699.1 3219633 3224192 R PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: sco:SCO2026 putative glutamate synthase large subunit; glutamate synthase (NADH) large subunit complement(3219633..3224192) Nocardioides sp. JS614 4596470 YP_924212.1 CDS Noca_3023 NC_008699.1 3224299 3225243 R PFAM: prolipoprotein diacylglyceryl transferase; KEGG: sco:SCO7822 probable prolipoprotein diacylglyceryl transferase.; prolipoprotein diacylglyceryl transferase complement(3224299..3225243) Nocardioides sp. JS614 4596471 YP_924213.1 CDS Noca_3024 NC_008699.1 3225240 3225872 R PFAM: electron transport protein SCO1/SenC; KEGG: fra:Francci3_2499 electron transport protein SCO1/SenC; electron transport protein SCO1/SenC complement(3225240..3225872) Nocardioides sp. JS614 4596472 YP_924214.1 CDS trpA NC_008699.1 3225856 3226680 R catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha complement(3225856..3226680) Nocardioides sp. JS614 4596473 YP_924215.1 CDS Noca_3026 NC_008699.1 3226677 3227957 R catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta complement(3226677..3227957) Nocardioides sp. JS614 4596474 YP_924216.1 CDS Noca_3027 NC_008699.1 3227954 3228736 R PFAM: Indole-3-glycerol phosphate synthase; KEGG: tfu:Tfu_1164 indole-3-glycerol-phosphate synthase; indole-3-glycerol phosphate synthase complement(3227954..3228736) Nocardioides sp. JS614 4596475 YP_924217.1 CDS Noca_3028 NC_008699.1 3228887 3229288 D KEGG: aba:Acid345_1888 hypothetical protein; hypothetical protein 3228887..3229288 Nocardioides sp. JS614 4596476 YP_924218.1 CDS Noca_3029 NC_008699.1 3229365 3229748 R KEGG: rha:RHA1_ro04356 hypothetical protein; hypothetical protein complement(3229365..3229748) Nocardioides sp. JS614 4596477 YP_924219.1 CDS Noca_3030 NC_008699.1 3229825 3230025 R KEGG: lxx:Lxx11270 mambrane protein; mambrane protein complement(3229825..3230025) Nocardioides sp. JS614 4596478 YP_924220.1 CDS Noca_3031 NC_008699.1 3230095 3230640 R KEGG: tfu:Tfu_1160 hypothetical protein; hypothetical protein complement(3230095..3230640) Nocardioides sp. JS614 4596479 YP_924221.1 CDS Noca_3032 NC_008699.1 3230666 3231037 R PFAM: phosphoribosyl-AMP cyclohydrolase; KEGG: fra:Francci3_3021 phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-AMP cyclohydrolase complement(3230666..3231037) Nocardioides sp. JS614 4596480 YP_924222.1 CDS Noca_3033 NC_008699.1 3231034 3232842 R PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tfu:Tfu_1158 ABC-type multidrug transport system ATPase and permease components; ABC transporter-like protein complement(3231034..3232842) Nocardioides sp. JS614 4596481 YP_924223.1 CDS Noca_3034 NC_008699.1 3232839 3234632 R PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tfu:Tfu_1157 ABC-type multidrug transport system ATPase and permease components; ABC transporter-like protein complement(3232839..3234632) Nocardioides sp. JS614 4596482 YP_924224.1 CDS Noca_3035 NC_008699.1 3234748 3235380 D KEGG: nfa:nfa38650 hypothetical protein; hypothetical protein 3234748..3235380 Nocardioides sp. JS614 4596483 YP_924225.1 CDS Noca_3036 NC_008699.1 3235527 3236771 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dsy:DSY4468 hypothetical protein; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 3235527..3236771 Nocardioides sp. JS614 4596484 YP_924226.1 CDS Noca_3037 NC_008699.1 3236776 3237090 D PFAM: DsrC family protein; KEGG: mta:Moth_1632 DsrC-like protein; DsrC family protein 3236776..3237090 Nocardioides sp. JS614 4596485 YP_924227.1 CDS Noca_3038 NC_008699.1 3237104 3237613 D KEGG: dsy:DSY4470 hypothetical protein; hypothetical protein 3237104..3237613 Nocardioides sp. JS614 4596486 YP_924228.1 CDS Noca_3039 NC_008699.1 3237797 3238573 R TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis; KEGG: sma:SAV6160 putative cyclase; imidazole glycerol phosphate synthase subunit hisF complement(3237797..3238573) Nocardioides sp. JS614 4596487 YP_924229.1 CDS Noca_3040 NC_008699.1 3238570 3239304 R catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide and the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)anthranilate; involved in histidine and tryptophan biosynthesis; phosphoribosyl isomerase A complement(3238570..3239304) Nocardioides sp. JS614 4596488 YP_924230.1 CDS Noca_3041 NC_008699.1 3239314 3239643 R hypothetical protein complement(3239314..3239643) Nocardioides sp. JS614 4600158 YP_924231.1 CDS hisH NC_008699.1 3239663 3240301 R with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH complement(3239663..3240301) Nocardioides sp. JS614 4600159 YP_924232.1 CDS Noca_3043 NC_008699.1 3240298 3240906 R PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: blo:BL1297 imidazoleglycerol-phosphate dehydratase; imidazoleglycerol-phosphate dehydratase complement(3240298..3240906) Nocardioides sp. JS614 4600160 YP_924233.1 CDS Noca_3044 NC_008699.1 3240906 3241994 R catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase complement(3240906..3241994) Nocardioides sp. JS614 4600161 YP_924234.1 CDS hisD NC_008699.1 3241998 3243296 R catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase complement(3241998..3243296) Nocardioides sp. JS614 4600162 YP_924235.1 CDS Noca_3046 NC_008699.1 3243408 3244073 D PFAM: peptidase S16, lon domain protein; KEGG: sma:SAV6150 hypothetical protein; peptidase S16, lon domain-containing protein 3243408..3244073 Nocardioides sp. JS614 4600163 YP_924236.1 CDS Noca_3047 NC_008699.1 3244073 3244564 D TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: sma:SAV6149 transcriptional regulator; ybaK/ebsC protein 3244073..3244564 Nocardioides sp. JS614 4600164 YP_924237.1 CDS Noca_3048 NC_008699.1 3244551 3246152 R KEGG: tfu:Tfu_0463 hypothetical protein; hypothetical protein complement(3244551..3246152) Nocardioides sp. JS614 4600165 YP_924238.1 CDS Noca_3049 NC_008699.1 3246163 3246768 R hypothetical protein complement(3246163..3246768) Nocardioides sp. JS614 4600166 YP_924239.1 CDS dnaE NC_008699.1 3246765 3250316 R catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha complement(3246765..3250316) Nocardioides sp. JS614 4600167 YP_924240.1 CDS Noca_3051 NC_008699.1 3250463 3251176 R PFAM: GCN5-related N-acetyltransferase; Chorismate mutase; KEGG: sco:SCO1988 hypothetical protein; N-acetyltransferase GCN5 complement(3250463..3251176) Nocardioides sp. JS614 4600168 YP_924241.1 CDS Noca_3052 NC_008699.1 3251166 3252104 R TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: sco:SCO2073 putative ribosomal large subunit pseudouridine synthase; ribosomal large subunit pseudouridine synthase D complement(3251166..3252104) Nocardioides sp. JS614 4600169 YP_924242.1 CDS Noca_3053 NC_008699.1 3252101 3252697 R PFAM: peptidase A8, signal peptidase II; KEGG: fal:FRAAL2208 lipoprotein signal peptidase (prolipoprotein signal peptidase) (signal peptidase II) (SPase II) (partial match); peptidase A8, signal peptidase II complement(3252101..3252697) Nocardioides sp. JS614 4600170 YP_924243.1 CDS Noca_3054 NC_008699.1 3252670 3253521 R PFAM: zinc finger, DksA/TraR C4-type; KEGG: rfr:Rfer_3349 histone protein; DksA/TraR C4-type zinc finger protein complement(3252670..3253521) Nocardioides sp. JS614 4600171 YP_924244.1 CDS Noca_3055 NC_008699.1 3253697 3254440 R PFAM: DivIVA family protein; KEGG: tfu:Tfu_1118 hypothetical protein; DivIVA family protein complement(3253697..3254440) Nocardioides sp. JS614 4600172 YP_924245.1 CDS Noca_3056 NC_008699.1 3254550 3254840 R KEGG: sma:SAV6128 hypothetical protein; hypothetical protein complement(3254550..3254840) Nocardioides sp. JS614 4600173 YP_924246.1 CDS Noca_3057 NC_008699.1 3254850 3255347 R PFAM: protein of unknown function DUF552; KEGG: tfu:Tfu_1116 hypothetical protein; hypothetical protein complement(3254850..3255347) Nocardioides sp. JS614 4600174 YP_924247.1 CDS Noca_3058 NC_008699.1 3255406 3256110 R PFAM: alanine racemase domain protein; KEGG: tfu:Tfu_1115 protein of unknown function UPF0001; alanine racemase domain-containing protein complement(3255406..3256110) Nocardioides sp. JS614 4600175 YP_924248.1 CDS Noca_3059 NC_008699.1 3256107 3256802 R PFAM: protein of unknown function DUF152; KEGG: pac:PPA0762 conserved protein; hypothetical protein complement(3256107..3256802) Nocardioides sp. JS614 4600176 YP_924249.1 CDS Noca_3060 NC_008699.1 3256799 3258004 R GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ complement(3256799..3258004) Nocardioides sp. JS614 4600177 YP_924250.1 CDS Noca_3061 NC_008699.1 3258343 3259089 R PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein, FtsQ-type; KEGG: pac:PPA0760 cell division protein FtsQ; cell division protein FtsQ complement(3258343..3259089) Nocardioides sp. JS614 4600178 YP_924251.1 CDS Noca_3062 NC_008699.1 3259082 3260422 R TIGRFAM: UDP-N-acetylmuramate--alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: tfu:Tfu_1111 UDP-N-acetylmuramate--alanine ligase; UDP-N-acetylmuramate--L-alanine ligase complement(3259082..3260422) Nocardioides sp. JS614 4600179 YP_924252.1 CDS Noca_3063 NC_008699.1 3260419 3261516 R KEGG: sco:SCO2084 putative UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; TIGRFAM: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: glycosyl transferase, family 28; Glycosyltransferase 28, C-terminal domain; UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-UDP N- acetylglucosamine transferase complement(3260419..3261516) Nocardioides sp. JS614 4600180 YP_924253.1 CDS Noca_3064 NC_008699.1 3261527 3262780 R TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: sma:SAV6121 putative cell division protein FtsW; cell division protein FtsW complement(3261527..3262780) Nocardioides sp. JS614 4600181 YP_924254.1 CDS murD NC_008699.1 3262823 3264289 R UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase complement(3262823..3264289) Nocardioides sp. JS614 4600182 YP_924255.1 CDS mraY NC_008699.1 3264289 3265383 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(3264289..3265383) Nocardioides sp. JS614 4600183 YP_924256.1 CDS Noca_3067 NC_008699.1 3265380 3266765 R TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: sco:SCO2088 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase complement(3265380..3266765) Nocardioides sp. JS614 4600184 YP_924257.1 CDS Noca_3068 NC_008699.1 3266753 3268267 R TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetases; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: sma:SAV6117 putative UDP-N-acetylmuramoylalanyl-D-glutamate- 2,6-diaminopimelate ligase; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase complement(3266753..3268267) Nocardioides sp. JS614 4600185 YP_924258.1 CDS Noca_3069 NC_008699.1 3268290 3270050 R PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: sco:SCO2090 cell division protein; peptidoglycan glycosyltransferase complement(3268290..3270050) Nocardioides sp. JS614 4600186 YP_924259.1 CDS Noca_3070 NC_008699.1 3270093 3270722 R KEGG: sma:SAV6115 hypothetical protein; hypothetical protein complement(3270093..3270722) Nocardioides sp. JS614 4600187 YP_924260.1 CDS Noca_3071 NC_008699.1 3270719 3271678 R TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: sma:SAV6114 S-adenosyl-methyltransferase; S-adenosyl-methyltransferase MraW complement(3270719..3271678) Nocardioides sp. JS614 4600188 YP_924261.1 CDS Noca_3072 NC_008699.1 3272105 3272539 R TIGRFAM: MraZ protein; PFAM: protein of unknown function UPF0040; KEGG: pac:PPA0749 MraZ protein; MraZ protein complement(3272105..3272539) Nocardioides sp. JS614 4600189 YP_924262.1 CDS Noca_3073 NC_008699.1 3272997 3273971 D PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: sma:SAV6112 putative regulatory protein; ATPase 3272997..3273971 Nocardioides sp. JS614 4600190 YP_924263.1 CDS Noca_3074 NC_008699.1 3274022 3275296 D PFAM: protein of unknown function DUF58; KEGG: sco:SCO2095 hypothetical protein; hypothetical protein 3274022..3275296 Nocardioides sp. JS614 4600191 YP_924264.1 CDS Noca_3075 NC_008699.1 3275296 3277692 D PFAM: transglutaminase domain protein; KEGG: sma:SAV6110 hypothetical protein; transglutaminase domain-containing protein 3275296..3277692 Nocardioides sp. JS614 4600192 YP_924265.1 CDS Noca_3076 NC_008699.1 3277714 3278175 R KEGG: sco:SCO2097 hypothetical protein; hypothetical protein complement(3277714..3278175) Nocardioides sp. JS614 4600193 YP_924266.1 CDS Noca_3077 NC_008699.1 3278322 3279080 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sma:SAV6108 methyltransferase; type 11 methyltransferase complement(3278322..3279080) Nocardioides sp. JS614 4600194 YP_924267.1 CDS Noca_3078 NC_008699.1 3279114 3279545 R KEGG: fra:Francci3_1400 hypothetical protein; hypothetical protein complement(3279114..3279545) Nocardioides sp. JS614 4600195 YP_924268.1 CDS Noca_3079 NC_008699.1 3279749 3280198 R hypothetical protein complement(3279749..3280198) Nocardioides sp. JS614 4600196 YP_924269.1 CDS Noca_3080 NC_008699.1 3280256 3280729 D PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: nfa:nfa28580 hypothetical protein; YbaK/prolyl-tRNA synthetase associated domain-containing protein 3280256..3280729 Nocardioides sp. JS614 4600197 YP_924270.1 CDS Noca_3081 NC_008699.1 3280729 3281085 D PFAM: arsenate reductase and related; KEGG: mxa:MXAN_3126 putative arsenate reductase; arsenate reductase-like protein 3280729..3281085 Nocardioides sp. JS614 4597866 YP_924271.1 CDS Noca_3082 NC_008699.1 3281116 3282414 D PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: sma:SAV6102 phytoene dehydrogenase; UDP-galactopyranose mutase 3281116..3282414 Nocardioides sp. JS614 4597867 YP_924272.1 CDS Noca_3083 NC_008699.1 3282434 3283324 R TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; KEGG: fal:FRAAL2163 5,10-methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase complement(3282434..3283324) Nocardioides sp. JS614 4597868 YP_924273.1 CDS Noca_3084 NC_008699.1 3283389 3284465 D PFAM: Polyprenyl synthetase; KEGG: tfu:Tfu_1051 putative polyprenyl synthase / dimethylallyltranstransferase; polyprenyl synthetase 3283389..3284465 Nocardioides sp. JS614 4597869 YP_924274.1 CDS Noca_3085 NC_008699.1 3284507 3284929 R KEGG: tfu:Tfu_1045 hypothetical protein; hypothetical protein complement(3284507..3284929) Nocardioides sp. JS614 4597870 YP_924275.1 CDS Noca_3086 NC_008699.1 3285001 3286977 D PFAM: protein kinase; PASTA domain containing protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: sco:SCO2110 putative eukaryotic-type serine/threonine protein kinase; protein kinase 3285001..3286977 Nocardioides sp. JS614 4597871 YP_924276.1 CDS Noca_3087 NC_008699.1 3287192 3288577 D KEGG: fra:Francci3_0800 HNH nuclease; hypothetical protein 3287192..3288577 Nocardioides sp. JS614 4597872 YP_924277.1 CDS Noca_3088 NC_008699.1 3288902 3289363 D KEGG: sco:SCO3763 hypothetical protein; hypothetical protein 3288902..3289363 Nocardioides sp. JS614 4597873 YP_924278.1 CDS Noca_3089 NC_008699.1 3289614 3291734 D KEGG: rba:RB9350 hypothetical protein; hypothetical protein 3289614..3291734 Nocardioides sp. JS614 4597874 YP_924279.1 CDS Noca_3090 NC_008699.1 3292202 3293086 D KEGG: sma:SAV6091 putative endonuclease IV; TIGRFAM: apurinic endonuclease Apn1; PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease, family 2; endonuclease IV 3292202..3293086 Nocardioides sp. JS614 4597875 YP_924280.1 CDS Noca_3091 NC_008699.1 3293083 3293967 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: pac:PPA0728 membrane spanning protein DUF6; hypothetical protein 3293083..3293967 Nocardioides sp. JS614 4597876 YP_924281.1 CDS Noca_3092 NC_008699.1 3294173 3295285 D TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; KEGG: tfu:Tfu_1039 phospho-2-dehydro-3-deoxyheptonate aldolase, subtype 2; 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase 3294173..3295285 Nocardioides sp. JS614 4597877 YP_924282.1 CDS Noca_3093 NC_008699.1 3295366 3296232 D KEGG: pac:PPA0345 hypothetical protein; hypothetical protein 3295366..3296232 Nocardioides sp. JS614 4597878 YP_924283.1 CDS Noca_3094 NC_008699.1 3296240 3297235 R PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase, class I and II; KEGG: sth:STH2403 threonine aldolase; L-threonine aldolase complement(3296240..3297235) Nocardioides sp. JS614 4597879 YP_924284.1 CDS Noca_3095 NC_008699.1 3297232 3297810 R PFAM: blue (type 1) copper domain protein; KEGG: aba:Acid345_1788 plastocyanin-like protein; blue (type1) copper domain-containing protein complement(3297232..3297810) Nocardioides sp. JS614 4597880 YP_924285.1 CDS Noca_3096 NC_008699.1 3297862 3299199 R KEGG: sma:SAV6086 putative 2-dehydro-3-deoxyphosphoheptonate aldolase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase, class II; 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase complement(3297862..3299199) Nocardioides sp. JS614 4597881 YP_924286.1 CDS Noca_3097 NC_008699.1 3299279 3300787 R PFAM: amino acid permease-associated region; KEGG: mmc:Mmcs_4568 amino acid permease-associated region; amino acid permease-associated protein complement(3299279..3300787) Nocardioides sp. JS614 4597882 YP_924287.1 CDS Noca_3098 NC_008699.1 3300835 3302061 R catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate; pyrophosphate--fructose-6-phosphate 1-phosphotransferase complement(3300835..3302061) Nocardioides sp. JS614 4597883 YP_924288.1 CDS Noca_3099 NC_008699.1 3302305 3303606 R PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO2690 membrane transport protein; major facilitator transporter complement(3302305..3303606) Nocardioides sp. JS614 4597884 YP_924289.1 CDS Noca_3100 NC_008699.1 3303631 3304473 D PFAM: protein of unknown function DUF1028; KEGG: rxy:Rxyl_0871 protein of unknown function DUF1028; hypothetical protein 3303631..3304473 Nocardioides sp. JS614 4597885 YP_924290.1 CDS Noca_3101 NC_008699.1 3304470 3305951 D TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase, FGGY; KEGG: rxy:Rxyl_1063 glycerol kinase; glycerol kinase 3304470..3305951 Nocardioides sp. JS614 4597886 YP_924291.1 CDS Noca_3102 NC_008699.1 3306028 3306912 R KEGG: nfa:nfa6330 hypothetical protein; hypothetical protein complement(3306028..3306912) Nocardioides sp. JS614 4597887 YP_924292.1 CDS Noca_3103 NC_008699.1 3306922 3307425 R PFAM: flavin reductase domain protein, FMN-binding; KEGG: rpb:RPB_1003 flavin reductase-like, FMN-binding; flavin reductase domain-containing protein complement(3306922..3307425) Nocardioides sp. JS614 4597888 YP_924293.1 CDS Noca_3104 NC_008699.1 3307422 3308165 R PFAM: phospholipid/glycerol acyltransferase; KEGG: fra:Francci3_3088 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase complement(3307422..3308165) Nocardioides sp. JS614 4597889 YP_924294.1 CDS Noca_3105 NC_008699.1 3308278 3309051 D PFAM: alpha/beta hydrolase fold; KEGG: sco:SCO2123 putative esterase/lipase; alpha/beta hydrolase fold protein 3308278..3309051 Nocardioides sp. JS614 4597890 YP_924295.1 CDS Noca_3106 NC_008699.1 3309067 3309531 D KEGG: sco:SCO2124 hypothetical protein; hypothetical protein 3309067..3309531 Nocardioides sp. JS614 4597891 YP_924296.1 CDS Noca_3107 NC_008699.1 3309587 3310894 D PFAM: LOR/SDH bifunctional enzyme conserved domain protein; KEGG: fal:FRAAL5090 hypothetical protein; LOR/SDH bifunctional protein 3309587..3310894 Nocardioides sp. JS614 4597892 YP_924297.1 CDS Noca_3108 NC_008699.1 3310827 3311834 R PFAM: ROK family protein; KEGG: tfu:Tfu_0273 glucokinase ROK; glucokinase complement(3310827..3311834) Nocardioides sp. JS614 4597893 YP_924298.1 CDS Noca_3109 NC_008699.1 3311849 3312790 R TIGRFAM: putative glucokinase, ROK family; PFAM: ROK family protein; KEGG: fal:FRAAL5091 putative glucokinase (glucose kinase); glucokinase complement(3311849..3312790) Nocardioides sp. JS614 4597894 YP_924299.1 CDS Noca_3110 NC_008699.1 3312787 3313251 R hypothetical protein complement(3312787..3313251) Nocardioides sp. JS614 4597895 YP_924300.1 CDS Noca_3111 NC_008699.1 3313253 3314485 R PFAM: Anion-transporting ATPase; KEGG: rxy:Rxyl_1314 arsenite-activated ATPase (ArsA); arsenite-transporting ATPase complement(3313253..3314485) Nocardioides sp. JS614 4597896 YP_924301.1 CDS Noca_3112 NC_008699.1 3314508 3314948 R PFAM: cyclase/dehydrase; KEGG: sco:SCO2129 hypothetical protein; cyclase/dehydrase complement(3314508..3314948) Nocardioides sp. JS614 4597897 YP_924302.1 CDS Noca_3113 NC_008699.1 3315098 3316900 D PFAM: AMP-dependent synthetase and ligase; KEGG: sma:SAV6069 putative acyl-CoA synthetase, long-chain-fatty-acid:CoA ligase; AMP-dependent synthetase and ligase 3315098..3316900 Nocardioides sp. JS614 4597898 YP_924303.1 CDS Noca_3114 NC_008699.1 3317102 3317836 D PFAM: SAF domain; KEGG: sus:Acid_4161 SAF domain; SAF domain-containing protein 3317102..3317836 Nocardioides sp. JS614 4597899 YP_924304.1 CDS Noca_3115 NC_008699.1 3317843 3319030 D KEGG: ade:Adeh_2826 Flp pilus assembly protein ATPase CpaE-like; Flp pilus assembly protein ATPase CpaE-like 3317843..3319030 Nocardioides sp. JS614 4597900 YP_924305.1 CDS Noca_3116 NC_008699.1 3319035 3320510 D PFAM: type II secretion system protein E; KEGG: dde:Dde_2363 type II/IV secretion system protein; type II secretion system protein E 3319035..3320510 Nocardioides sp. JS614 4595546 YP_924306.1 CDS Noca_3117 NC_008699.1 3320530 3321510 D PFAM: type II secretion system protein; KEGG: cte:CT0435 TadB protein; type II secretion system protein 3320530..3321510 Nocardioides sp. JS614 4595547 YP_924307.1 CDS Noca_3118 NC_008699.1 3321512 3322426 D PFAM: type II secretion system protein; KEGG: mxa:MXAN_4650 type II secretion system protein F domain protein; type II secretion system protein 3321512..3322426 Nocardioides sp. JS614 4595548 YP_924308.1 CDS Noca_3119 NC_008699.1 3322426 3324033 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: rxy:Rxyl_2612 GAF sensor signal transduction histidine kinase; ATPase domain-containing protein 3322426..3324033 Nocardioides sp. JS614 4595549 YP_924309.1 CDS Noca_3120 NC_008699.1 3324030 3324668 D PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: rha:RHA1_ro00150 response regulator, two-component system; response regulator receiver 3324030..3324668 Nocardioides sp. JS614 4595550 YP_924310.1 CDS Noca_3121 NC_008699.1 3324875 3325078 D PFAM: Flp/Fap pilin component; Flp/Fap pilin component 3324875..3325078 Nocardioides sp. JS614 4595551 YP_924311.1 CDS Noca_3122 NC_008699.1 3325140 3326375 R PFAM: peptidase M48, Ste24p; KEGG: mta:Moth_1231 STE24 endopeptidase; peptidase M48, Ste24p complement(3325140..3326375) Nocardioides sp. JS614 4595552 YP_924312.1 CDS Noca_3123 NC_008699.1 3326372 3327646 R KEGG: sma:SAV6064 hypothetical protein; hypothetical protein complement(3326372..3327646) Nocardioides sp. JS614 4595553 YP_924313.1 CDS Noca_3124 NC_008699.1 3327660 3328643 R PFAM: NLP/P60 protein; KEGG: sco:SCO4793 NPL/P60 family secreted protein; NLP/P60 protein complement(3327660..3328643) Nocardioides sp. JS614 4595554 YP_924314.1 CDS Noca_3125 NC_008699.1 3329004 3329237 R KEGG: mmc:Mmcs_3288 hypothetical protein; hypothetical protein complement(3329004..3329237) Nocardioides sp. JS614 4595555 YP_924315.1 CDS Noca_3126 NC_008699.1 3329291 3330568 R KEGG: sma:SAV6061 hypothetical protein; hypothetical protein complement(3329291..3330568) Nocardioides sp. JS614 4595556 YP_924316.1 CDS Noca_3127 NC_008699.1 3330579 3330845 R KEGG: sma:SAV6060 hypothetical protein; hypothetical protein complement(3330579..3330845) Nocardioides sp. JS614 4595557 YP_924317.1 CDS Noca_3128 NC_008699.1 3330957 3332762 D contains 3'-5'exonuclease domain; hypothetical protein 3330957..3332762 Nocardioides sp. JS614 4595558 YP_924318.1 CDS Noca_3129 NC_008699.1 3332782 3333060 D PFAM: regulatory protein, AsnC/Lrp family; KEGG: tfu:Tfu_1025 putative transcriptional regulator; AsnC family transcriptional regulator 3332782..3333060 Nocardioides sp. JS614 4595559 YP_924319.1 CDS Noca_3130 NC_008699.1 3333069 3333695 D KEGG: ppr:PBPRA0653 hypothetical protein; hypothetical protein 3333069..3333695 Nocardioides sp. JS614 4595560 YP_924320.1 CDS Noca_3131 NC_008699.1 3333722 3334747 R KEGG: sma:SAV6056 putative anthranilate phosphoribosyltransferase; TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase, family 3; anthranilate phosphoribosyltransferase complement(3333722..3334747) Nocardioides sp. JS614 4595561 YP_924321.1 CDS Noca_3132 NC_008699.1 3334744 3335163 R KEGG: rha:RHA1_ro05908 hypothetical protein; hypothetical protein complement(3334744..3335163) Nocardioides sp. JS614 4595562 YP_924322.1 CDS Noca_3133 NC_008699.1 3335177 3336163 R KEGG: fal:FRAAL4308 hypothetical protein; hypothetical protein complement(3335177..3336163) Nocardioides sp. JS614 4595563 YP_924323.1 CDS Noca_3134 NC_008699.1 3336203 3336850 D PFAM: cytochrome c oxidase, subunit III; KEGG: sco:SCO2151 cytochrome c oxidase subunit III; cytochrome c oxidase subunit III 3336203..3336850 Nocardioides sp. JS614 4595564 YP_924324.1 CDS Noca_3135 NC_008699.1 3336889 3337758 D PFAM: cytochrome c, class I; KEGG: sco:SCO2150 cytochrome C heme-binding subunit; cytochrome c, class I 3336889..3337758 Nocardioides sp. JS614 4595565 YP_924325.1 CDS Noca_3136 NC_008699.1 3337755 3338861 D PFAM: Rieske [2Fe-2S] domain protein; KEGG: pac:PPA0711 ubiquinol-cytochrome c reductase iron-sulfur subunit; Rieske (2Fe-2S) domain-containing protein 3337755..3338861 Nocardioides sp. JS614 4595566 YP_924326.1 CDS Noca_3137 NC_008699.1 3338864 3340612 D PFAM: Cytochrome b/b6, N-terminal domain; KEGG: pac:PPA0710 cytochrome b subunit; cytochrome b/b6 domain-containing protein 3338864..3340612 Nocardioides sp. JS614 4595567 YP_924327.1 CDS Noca_3138 NC_008699.1 3340739 3341947 R PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: mmc:Mmcs_1448 ErfK/YbiS/YcfS/YnhG; ErfK/YbiS/YcfS/YnhG family protein complement(3340739..3341947) Nocardioides sp. JS614 4595568 YP_924328.1 CDS Noca_3139 NC_008699.1 3342034 3342432 R KEGG: pac:PPA0703 hypothetical protein; hypothetical protein complement(3342034..3342432) Nocardioides sp. JS614 4595569 YP_924329.1 CDS Noca_3140 NC_008699.1 3342432 3344180 R PFAM: cytochrome c oxidase, subunit I; KEGG: sco:SCO2155 putative cytochrome c oxidase subunit I; cytochrome-c oxidase complement(3342432..3344180) Nocardioides sp. JS614 4595570 YP_924330.1 CDS Noca_3141 NC_008699.1 3344177 3345151 R PFAM: cytochrome c oxidase, subunit II; cytochrome C oxidase subunit II, transmembrane region; KEGG: pac:PPA0701 cytochrome c oxidase subunit II; cytochrome c oxidase subunit II complement(3344177..3345151) Nocardioides sp. JS614 4595571 YP_924331.1 CDS Noca_3142 NC_008699.1 3345262 3346401 D PFAM: aminotransferase, class V; KEGG: sco:SCO2157 aminotransferase; cysteine desulfurase 3345262..3346401 Nocardioides sp. JS614 4600127 YP_924332.1 CDS Noca_3143 NC_008699.1 3346398 3346646 D PFAM: SirA family protein; KEGG: sma:SAV6046 aminotransferase; SirA family protein 3346398..3346646 Nocardioides sp. JS614 4600128 YP_924333.1 CDS Noca_3144 NC_008699.1 3346630 3347613 R PFAM: PfkB domain protein; KEGG: sco:SCO2158 kinase; ribokinase-like domain-containing protein complement(3346630..3347613) Nocardioides sp. JS614 4600129 YP_924334.1 CDS Noca_3145 NC_008699.1 3347677 3347925 D hypothetical protein 3347677..3347925 Nocardioides sp. JS614 4600130 YP_924335.1 CDS Noca_3146 NC_008699.1 3347998 3348360 R TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: sma:SAV6042 hypothetical protein; iron-sulfur cluster assembly accessory protein complement(3347998..3348360) Nocardioides sp. JS614 4600131 YP_924336.1 CDS Noca_3147 NC_008699.1 3348452 3349525 R PFAM: glycerate kinase; KEGG: tfu:Tfu_1010 glycerate kinase; glycerate kinase complement(3348452..3349525) Nocardioides sp. JS614 4600132 YP_924337.1 CDS Noca_3148 NC_008699.1 3349575 3350456 D PFAM: GCN5-related N-acetyltransferase; KEGG: rxy:Rxyl_1997 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3349575..3350456 Nocardioides sp. JS614 4600133 YP_924338.1 CDS Noca_3149 NC_008699.1 3350487 3351671 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 3350487..3351671 Nocardioides sp. JS614 4600134 YP_924339.1 CDS Noca_3150 NC_008699.1 3351883 3352461 R KEGG: sco:SCO2203 hypothetical protein; hypothetical protein complement(3351883..3352461) Nocardioides sp. JS614 4600135 YP_924340.1 CDS Noca_3151 NC_008699.1 3352466 3353395 R putative metalloprotease; heat shock protein HtpX complement(3352466..3353395) Nocardioides sp. JS614 4600136 YP_924341.1 CDS Noca_3152 NC_008699.1 3353451 3354233 R PFAM: PspA/IM30 family protein; KEGG: sco:SCO2168 putative phage shock protein A; PspA/IM30 family protein complement(3353451..3354233) Nocardioides sp. JS614 4600137 YP_924342.1 CDS Noca_3153 NC_008699.1 3354385 3354969 D KEGG: sco:SCO2169 integral membrane protein; integral membrane protein 3354385..3354969 Nocardioides sp. JS614 4600138 YP_924343.1 CDS Noca_3154 NC_008699.1 3355064 3356071 R PFAM: aldo/keto reductase; KEGG: mxa:MXAN_6482 oxidoreductase, aldo/keto reductase family; aldo/keto reductase complement(3355064..3356071) Nocardioides sp. JS614 4600139 YP_924344.1 CDS Noca_3155 NC_008699.1 3356096 3357157 R TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: sco:SCO7475 putative phenylacetic acid degradation NADH oxidoreductase PaaE; phenylacetate-CoA oxygenase/reductase subunit PaaK complement(3356096..3357157) Nocardioides sp. JS614 4600140 YP_924345.1 CDS Noca_3156 NC_008699.1 3357172 3357657 R TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59; KEGG: sco:SCO7474 putative phenylacetic acid degradation protein PaaD; phenylacetate-CoA oxygenase subunit PaaJ complement(3357172..3357657) Nocardioides sp. JS614 4600141 YP_924346.1 CDS Noca_3157 NC_008699.1 3357654 3358397 R TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: rpc:RPC_0689 phenylacetate-CoA oxygenase, PaaI subunit; phenylacetate-CoA oxygenase subunit PaaI complement(3357654..3358397) Nocardioides sp. JS614 4600142 YP_924347.1 CDS paaB NC_008699.1 3358394 3358675 R with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation; phenylacetate-CoA oxygenase subunit PaaB complement(3358394..3358675) Nocardioides sp. JS614 4600143 YP_924348.1 CDS paaA NC_008699.1 3358672 3359592 R with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; phenylacetate-CoA oxygenase subunit PaaA complement(3358672..3359592) Nocardioides sp. JS614 4600144 YP_924349.1 CDS Noca_3160 NC_008699.1 3359679 3360236 D PFAM: GCN5-related N-acetyltransferase; KEGG: tfu:Tfu_0789 hypothetical protein; N-acetyltransferase GCN5 3359679..3360236 Nocardioides sp. JS614 4600145 YP_924350.1 CDS Noca_3161 NC_008699.1 3360304 3360522 D hypothetical protein 3360304..3360522 Nocardioides sp. JS614 4600146 YP_924351.1 CDS Noca_3162 NC_008699.1 3360547 3361257 D PFAM: AzlC family protein; KEGG: tfu:Tfu_1138 hypothetical protein; AzlC family protein 3360547..3361257 Nocardioides sp. JS614 4600147 YP_924352.1 CDS Noca_3163 NC_008699.1 3361254 3361556 D PFAM: branched-chain amino acid transport; KEGG: sco:SCO5764 hypothetical protein; branched-chain amino acid transport 3361254..3361556 Nocardioides sp. JS614 4600148 YP_924353.1 CDS Noca_3164 NC_008699.1 3361581 3363587 R PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; phosphotransferase system, EIIC; phosphotransferase system, lactose/cellobiose-specific IIB subunit; KEGG: ppr:PBPRB0363 putative mannitol-specific IIABC component, PTS system; phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 complement(3361581..3363587) Nocardioides sp. JS614 4600149 YP_924354.1 CDS Noca_3165 NC_008699.1 3363808 3364866 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pac:PPA0918 putative zinc-binding sorbitol dehydrogenase; alcohol dehydrogenase 3363808..3364866 Nocardioides sp. JS614 4600150 YP_924355.1 CDS Noca_3166 NC_008699.1 3365367 3366950 R PFAM: peptidase M4, thermolysin; Propeptide, peptidase M4 and M36; Peptidase M4, thermolysin; KEGG: sma:SAV5669 neutral zinc metalloprotease; griselysin complement(3365367..3366950) Nocardioides sp. JS614 4600151 YP_924356.1 CDS Noca_3167 NC_008699.1 3367087 3367830 R catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase complement(3367087..3367830) Nocardioides sp. JS614 4600152 YP_924357.1 CDS Noca_3168 NC_008699.1 3367909 3368424 D KEGG: nfa:nfa6240 hypothetical protein; hypothetical protein 3367909..3368424 Nocardioides sp. JS614 4600153 YP_924358.1 CDS Noca_3169 NC_008699.1 3368494 3369090 D KEGG: rha:RHA1_ro07230 hypothetical protein; hypothetical protein 3368494..3369090 Nocardioides sp. JS614 4600154 YP_924359.1 CDS Noca_3170 NC_008699.1 3369087 3369638 D KEGG: rha:RHA1_ro07229 hypothetical protein; hypothetical protein 3369087..3369638 Nocardioides sp. JS614 4600155 YP_924360.1 CDS Noca_3171 NC_008699.1 3369700 3370305 D PFAM: Carboxymuconolactone decarboxylase; KEGG: sma:SAV1635 hypothetical protein; carboxymuconolactone decarboxylase 3369700..3370305 Nocardioides sp. JS614 4600156 YP_924361.1 CDS Noca_3172 NC_008699.1 3370302 3371180 D PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: nfa:nfa22150 putative sigma factor; sigma-70 region 2 domain-containing protein 3370302..3371180 Nocardioides sp. JS614 4600157 YP_924362.1 CDS Noca_3173 NC_008699.1 3371225 3371923 R hypothetical protein complement(3371225..3371923) Nocardioides sp. JS614 4599036 YP_924363.1 CDS Noca_3174 NC_008699.1 3371935 3372738 R hypothetical protein complement(3371935..3372738) Nocardioides sp. JS614 4599037 YP_924364.1 CDS Noca_3175 NC_008699.1 3372748 3373494 R hypothetical protein complement(3372748..3373494) Nocardioides sp. JS614 4599038 YP_924365.1 CDS Noca_3176 NC_008699.1 3373706 3375067 R PFAM: peptidase M16 domain protein; KEGG: fal:FRAAL5752 putative zinc protease; peptidase M16 domain-containing protein complement(3373706..3375067) Nocardioides sp. JS614 4599039 YP_924366.1 CDS Noca_3177 NC_008699.1 3375064 3377292 R KEGG: sma:SAV2523 putative guanosine pentaphosphate synthetase/polyribonucleotide nucleotidyltransferase alpha chain; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein; polynucleotide phosphorylase/polyadenylase complement(3375064..3377292) Nocardioides sp. JS614 4599040 YP_924367.1 CDS Noca_3178 NC_008699.1 3377570 3377845 R PFAM: ribosomal protein S15; KEGG: tfu:Tfu_0783 ribosomal protein S15, bacterial chloroplast and mitochondrial type; 30S ribosomal protein S15 complement(3377570..3377845) Nocardioides sp. JS614 4599041 YP_924368.1 CDS Noca_3179 NC_008699.1 3378111 3378773 D KEGG: xcb:XC_3880 hypothetical protein; hypothetical protein 3378111..3378773 Nocardioides sp. JS614 4599042 YP_924369.1 CDS Noca_3180 NC_008699.1 3378783 3379028 R hypothetical protein complement(3378783..3379028) Nocardioides sp. JS614 4599043 YP_924370.1 CDS Noca_3181 NC_008699.1 3379234 3380976 R TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: mmc:Mmcs_0083 phosphoenolpyruvate-protein phosphotransferase; phosphoenolpyruvate--protein phosphotransferase complement(3379234..3380976) Nocardioides sp. JS614 4599044 YP_924371.1 CDS Noca_3182 NC_008699.1 3381009 3381776 D PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: nfa:nfa28560 putative transcriptional regulator; DeoR family transcriptional regulator 3381009..3381776 Nocardioides sp. JS614 4599045 YP_924372.1 CDS Noca_3183 NC_008699.1 3381773 3382729 D PFAM: PfkB domain protein; KEGG: nfa:nfa28550 putative fructose-1-phosphate kinase; ribokinase-like domain-containing protein 3381773..3382729 Nocardioides sp. JS614 4599046 YP_924373.1 CDS Noca_3184 NC_008699.1 3382733 3384781 D TIGRFAM: PTS system, fructose-specific, IIB subunnit; PTS system, fructose subfamily, IIA subunit; PTS system, fructose subfamily, IIC subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; phosphotransferase system, EIIC; phosphotransferase system PTS, fructose-specific IIB subunit; KEGG: mmc:Mmcs_0080 phosphotransferase system, fructose IIC component; PTS system fructose subfamily transporter subunit IIC 3382733..3384781 Nocardioides sp. JS614 4599047 YP_924374.1 CDS Noca_3185 NC_008699.1 3384819 3385076 D TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: mmc:Mmcs_0079 phosphotransferase system, HPr; HPr family phosphocarrier protein 3384819..3385076 Nocardioides sp. JS614 4599048 YP_924375.1 CDS Noca_3186 NC_008699.1 3385080 3386054 R KEGG: mbo:Mb2137 probable integral membrane protein; hypothetical protein complement(3385080..3386054) Nocardioides sp. JS614 4599049 YP_924376.1 CDS Noca_3187 NC_008699.1 3386051 3386983 R TIGRFAM: riboflavin biosynthesis protein RibF; cytidyltransferase-related domain; PFAM: Riboflavin kinase / FAD synthetase; cytidylyltransferase; KEGG: lxx:Lxx07280 riboflavin kinase/ FMN adenyltransferase; riboflavin kinase/FMN adenylyltransferase complement(3386051..3386983) Nocardioides sp. JS614 4599050 YP_924377.1 CDS truB NC_008699.1 3387004 3387873 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(3387004..3387873) Nocardioides sp. JS614 4599051 YP_924378.1 CDS rbfA NC_008699.1 3387860 3388348 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(3387860..3388348) Nocardioides sp. JS614 4599052 YP_924379.1 CDS infB NC_008699.1 3388521 3391337 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(3388521..3391337) Nocardioides sp. JS614 4599053 YP_924380.1 CDS Noca_3191 NC_008699.1 3391439 3391804 R PFAM: protein of unknown function DUF448; KEGG: mmc:Mmcs_2081 protein of unknown function DUF448; hypothetical protein complement(3391439..3391804) Nocardioides sp. JS614 4599054 YP_924381.1 CDS nusA NC_008699.1 3391878 3392861 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(3391878..3392861) Nocardioides sp. JS614 4599055 YP_924382.1 CDS Noca_3193 NC_008699.1 3392861 3393388 R in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein complement(3392861..3393388) Nocardioides sp. JS614 4599056 YP_924383.1 CDS Noca_3194 NC_008699.1 3393462 3393908 D hypothetical protein 3393462..3393908 Nocardioides sp. JS614 4599057 YP_924384.1 CDS Noca_3195 NC_008699.1 3393901 3394332 D KEGG: sco:SCO5701 hypothetical protein; hypothetical protein 3393901..3394332 Nocardioides sp. JS614 4599058 YP_924385.1 CDS Noca_3196 NC_008699.1 3394485 3395198 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: fra:Francci3_1747 HAD-superfamily hydrolase, subfamily IA, variant 1; HAD family hydrolase complement(3394485..3395198) Nocardioides sp. JS614 4599059 YP_924386.1 CDS Noca_3197 NC_008699.1 3395195 3396964 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(3395195..3396964) Nocardioides sp. JS614 4599060 YP_924387.1 CDS Noca_3198 NC_008699.1 3397310 3398155 R PFAM: GCN5-related N-acetyltransferase; KEGG: sma:SAV2560 putative acetyltransferase; N-acetyltransferase GCN5 complement(3397310..3398155) Nocardioides sp. JS614 4599061 YP_924388.1 CDS Noca_3199 NC_008699.1 3398192 3398701 R hypothetical protein complement(3398192..3398701) Nocardioides sp. JS614 4599062 YP_924389.1 CDS Noca_3200 NC_008699.1 3398729 3399871 R PFAM: phosphoesterase; KEGG: pac:PPA1745 hypothetical protein (phosphoesterase family); phosphoesterase complement(3398729..3399871) Nocardioides sp. JS614 4599063 YP_924390.1 CDS Noca_3201 NC_008699.1 3399868 3401172 R PFAM: phosphoesterase; KEGG: bam:Bamb_5381 phosphoesterase; phosphoesterase complement(3399868..3401172) Nocardioides sp. JS614 4599064 YP_924391.1 CDS ispG NC_008699.1 3401198 3402361 R catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(3401198..3402361) Nocardioides sp. JS614 4599065 YP_924392.1 CDS Noca_3203 NC_008699.1 3402385 3403746 R PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein; KEGG: sma:SAV2562 putative metalloprotease; peptidase M50 complement(3402385..3403746) Nocardioides sp. JS614 4599066 YP_924393.1 CDS Noca_3204 NC_008699.1 3403750 3404868 R catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(3403750..3404868) Nocardioides sp. JS614 4599067 YP_924394.1 CDS Noca_3205 NC_008699.1 3404982 3406334 D TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; KEGG: rha:RHA1_ro05598 4-aminobutyrate transaminase; 4-aminobutyrate aminotransferase 3404982..3406334 Nocardioides sp. JS614 4599068 YP_924395.1 CDS Noca_3206 NC_008699.1 3406345 3407337 R KEGG: rso:RS05802 putative transmembrane protein; putative transmembrane protein complement(3406345..3407337) Nocardioides sp. JS614 4599069 YP_924396.1 CDS Noca_3207 NC_008699.1 3407435 3408187 R PFAM: isochorismatase hydrolase; KEGG: eca:ECA2383 putative isochorismatase; isochorismatase hydrolase complement(3407435..3408187) Nocardioides sp. JS614 4599070 YP_924397.1 CDS Noca_3208 NC_008699.1 3408507 3408746 D KEGG: mmc:Mmcs_2752 hypothetical protein; hypothetical protein 3408507..3408746 Nocardioides sp. JS614 4599071 YP_924398.1 CDS Noca_3209 NC_008699.1 3409154 3409558 R PFAM: NUDIX hydrolase; KEGG: dar:Daro_3706 NUDIX hydrolase:thiamine monophosphate synthase; NUDIX hydrolase complement(3409154..3409558) Nocardioides sp. JS614 4599072 YP_924399.1 CDS Noca_3210 NC_008699.1 3409719 3409985 R hypothetical protein complement(3409719..3409985) Nocardioides sp. JS614 4599073 YP_924400.1 CDS Noca_3211 NC_008699.1 3410122 3411189 R KEGG: nfa:nfa6110 hypothetical protein; hypothetical protein complement(3410122..3411189) Nocardioides sp. JS614 4599149 YP_924401.1 CDS Noca_3212 NC_008699.1 3411375 3411638 D KEGG: rha:RHA1_ro06668 possible helicase; putative helicase 3411375..3411638 Nocardioides sp. JS614 4599150 YP_924402.1 CDS Noca_3213 NC_008699.1 3411651 3412352 R hypothetical protein complement(3411651..3412352) Nocardioides sp. JS614 4599151 YP_924403.1 CDS Noca_3214 NC_008699.1 3412360 3413196 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV1735 putative ABC transporter permease protein; binding-protein-dependent transport systems inner membrane component complement(3412360..3413196) Nocardioides sp. JS614 4599152 YP_924404.1 CDS Noca_3215 NC_008699.1 3413196 3414044 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV1736 putative ABC transporter permease protein; binding-protein-dependent transport system inner membrane protein complement(3413196..3414044) Nocardioides sp. JS614 4599153 YP_924405.1 CDS Noca_3216 NC_008699.1 3414046 3415263 R PFAM: extracellular solute-binding protein, family 1; KEGG: sma:SAV1737 putative ABC transporter binding protein; extracellular solute-binding protein complement(3414046..3415263) Nocardioides sp. JS614 4599154 YP_924406.1 CDS Noca_3217 NC_008699.1 3415260 3416318 R KEGG: sma:SAV1738 putative ABC transporter ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase complement(3415260..3416318) Nocardioides sp. JS614 4599155 YP_924407.1 CDS Noca_3218 NC_008699.1 3416498 3417895 D PFAM: polysaccharide deacetylase; KEGG: jan:Jann_2517 polysaccharide deacetylase; polysaccharide deacetylase 3416498..3417895 Nocardioides sp. JS614 4599156 YP_924408.1 CDS Noca_3219 NC_008699.1 3418237 3419520 D PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: mpa:MAP1053 hypothetical protein; HNH endonuclease 3418237..3419520 Nocardioides sp. JS614 4599157 YP_924409.1 CDS Noca_3220 NC_008699.1 3419517 3420389 D KEGG: nfa:nfa40670 putative translation initiation factor IF-2; hypothetical protein 3419517..3420389 Nocardioides sp. JS614 4599158 YP_924410.1 CDS Noca_3221 NC_008699.1 3420401 3421624 R PFAM: Saccharopine dehydrogenase; KEGG: mmc:Mmcs_4946 saccharopine dehydrogenase; saccharopine dehydrogenase complement(3420401..3421624) Nocardioides sp. JS614 4599159 YP_924411.1 CDS Noca_3222 NC_008699.1 3421752 3423185 R PFAM: aldehyde dehydrogenase; KEGG: rxy:Rxyl_2917 aldehyde dehydrogenase; aldehyde dehydrogenase complement(3421752..3423185) Nocardioides sp. JS614 4599160 YP_924412.1 CDS Noca_3223 NC_008699.1 3423265 3424881 R PFAM: Amidohydrolase 3; KEGG: rha:RHA1_ro00158 probable metal-dependant glycoprotease; amidohydrolase 3 complement(3423265..3424881) Nocardioides sp. JS614 4599161 YP_924413.1 CDS Noca_3224 NC_008699.1 3424882 3425883 R TIGRFAM: putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: mmc:Mmcs_1825 agmatinase, putative; agmatinase complement(3424882..3425883) Nocardioides sp. JS614 4599162 YP_924414.1 CDS Noca_3225 NC_008699.1 3425991 3427361 D PFAM: aminotransferase class-III; KEGG: sma:SAV2612 putative aminotransferase; hypothetical protein 3425991..3427361 Nocardioides sp. JS614 4599163 YP_924415.1 CDS Noca_3226 NC_008699.1 3427386 3428255 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV2588 putative polyamine ABC-transporter integral membrane protein; binding-protein-dependent transport system inner membrane protein complement(3427386..3428255) Nocardioides sp. JS614 4599164 YP_924416.1 CDS Noca_3227 NC_008699.1 3428255 3429127 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV2589 putative polyamine ABC-transporter permease protein; binding-protein-dependent transport system inner membrane protein complement(3428255..3429127) Nocardioides sp. JS614 4599165 YP_924417.1 CDS Noca_3228 NC_008699.1 3429145 3430278 R KEGG: sma:SAV2590 putative polyamine ABC-transporter ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase complement(3429145..3430278) Nocardioides sp. JS614 4599166 YP_924418.1 CDS Noca_3229 NC_008699.1 3430271 3431497 R PFAM: extracellular solute-binding protein, family 1; KEGG: sma:SAV2591 putative ABC-transporter polyamine-binding lipoprotein; extracellular solute-binding protein complement(3430271..3431497) Nocardioides sp. JS614 4599167 YP_924419.1 CDS Noca_3230 NC_008699.1 3431647 3432135 D PFAM: regulatory protein, AsnC/Lrp family; KEGG: fra:Francci3_3779 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 3431647..3432135 Nocardioides sp. JS614 4599168 YP_924420.1 CDS Noca_3231 NC_008699.1 3432120 3433520 D PFAM: FAD dependent oxidoreductase; KEGG: fal:FRAAL6023 hypothetical protein; putative signal peptide; FAD dependent oxidoreductase 3432120..3433520 Nocardioides sp. JS614 4599169 YP_924421.1 CDS Noca_3232 NC_008699.1 3433521 3434981 R PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: sco:SCO6736 metallopeptidase; peptidase M1, membrane alanine aminopeptidase complement(3433521..3434981) Nocardioides sp. JS614 4599170 YP_924422.1 CDS Noca_3233 NC_008699.1 3435379 3436101 D PFAM: protein of unknown function RIO1; KEGG: eba:ebA56 RIO-type serine/threonine protein kinase; hypothetical protein 3435379..3436101 Nocardioides sp. JS614 4599171 YP_924423.1 CDS Noca_3234 NC_008699.1 3436121 3437206 D KEGG: sma:SAV2616 hypothetical protein; hypothetical protein 3436121..3437206 Nocardioides sp. JS614 4599172 YP_924424.1 CDS Noca_3235 NC_008699.1 3437375 3438874 D PFAM: metallophosphoesterase; KEGG: sma:SAV5405 hypothetical protein; metallophosphoesterase 3437375..3438874 Nocardioides sp. JS614 4599173 YP_924425.1 CDS Noca_3236 NC_008699.1 3438898 3440079 R PFAM: glycosyl transferase, group 1; KEGG: fra:Francci3_1907 glycosyl transferase, group 1; group 1 glycosyl transferase complement(3438898..3440079) Nocardioides sp. JS614 4599174 YP_924426.1 CDS Noca_3237 NC_008699.1 3440180 3441310 R 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N complement(3440180..3441310) Nocardioides sp. JS614 4599175 YP_924427.1 CDS Noca_3238 NC_008699.1 3441378 3441722 R hypothetical protein complement(3441378..3441722) Nocardioides sp. JS614 4599176 YP_924428.1 CDS Noca_3239 NC_008699.1 3441787 3442713 R PFAM: phosphatidate cytidylyltransferase; KEGG: tfu:Tfu_0680 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase complement(3441787..3442713) Nocardioides sp. JS614 4599177 YP_924429.1 CDS Noca_3240 NC_008699.1 3442728 3443285 R PFAM: ribosome recycling factor; KEGG: pac:PPA1518 ribosome recycling factor; ribosome recycling factor complement(3442728..3443285) Nocardioides sp. JS614 4599178 YP_924430.1 CDS Noca_3241 NC_008699.1 3443328 3444041 R TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: rha:RHA1_ro06580 uridylate kinase; uridylate kinase complement(3443328..3444041) Nocardioides sp. JS614 4599179 YP_924431.1 CDS Noca_3242 NC_008699.1 3444146 3444958 R TIGRFAM: translation elongation factor Ts; PFAM: ubiquitin-associated- domain-containing protein; elongation factor Ts; KEGG: mpa:MAP2955c elongation factor EF-Ts; translation elongation factor Ts (EF-Ts) complement(3444146..3444958) Nocardioides sp. JS614 4599180 YP_924432.1 CDS Noca_3243 NC_008699.1 3445022 3445945 R PFAM: ribosomal protein S2; KEGG: sco:SCO5624 30S ribosomal protein S2; 30S ribosomal protein S2P complement(3445022..3445945) Nocardioides sp. JS614 4599181 YP_924433.1 CDS Noca_3244 NC_008699.1 3446350 3446985 D PFAM: peptidase M23B; KEGG: sco:SCO5623 hypothetical protein; peptidase M23B 3446350..3446985 Nocardioides sp. JS614 4599182 YP_924434.1 CDS Noca_3245 NC_008699.1 3446958 3447896 R PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: nfa:nfa41390 putative recombinase; phage integrase family protein complement(3446958..3447896) Nocardioides sp. JS614 4599183 YP_924435.1 CDS Noca_3246 NC_008699.1 3447925 3449061 R TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: sma:SAV2631 putative DNA processing Smf-family protein; DNA protecting protein DprA complement(3447925..3449061) Nocardioides sp. JS614 4599184 YP_924436.1 CDS Noca_3247 NC_008699.1 3449058 3450644 R KEGG: sco:SCO5603 magnesium chelatase family protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; SMART: AAA ATPase; Mg chelatase subunit ChlI complement(3449058..3450644) Nocardioides sp. JS614 4599185 YP_924437.1 CDS Noca_3248 NC_008699.1 3450644 3451018 R PFAM: protein of unknown function UPF0102; KEGG: sco:SCO5602 predicted endonuclease; hypothetical protein complement(3450644..3451018) Nocardioides sp. JS614 4599186 YP_924438.1 CDS Noca_3249 NC_008699.1 3451181 3452338 D PFAM: major facilitator superfamily MFS_1; KEGG: cvi:CV1398 hypothetical protein; major facilitator transporter 3451181..3452338 Nocardioides sp. JS614 4599187 YP_924439.1 CDS Noca_3250 NC_008699.1 3452365 3454086 R KEGG: bxe:Bxe_A2791 predicted membrane protein; hypothetical protein complement(3452365..3454086) Nocardioides sp. JS614 4599188 YP_924440.1 CDS Noca_3251 NC_008699.1 3454083 3454583 R PFAM: TadE family protein; KEGG: bam:Bamb_1401 TadE family protein; TadE family protein complement(3454083..3454583) Nocardioides sp. JS614 4599189 YP_924441.1 CDS Noca_3252 NC_008699.1 3454698 3455006 R KEGG: sma:SAV2634 hypothetical protein; hypothetical protein complement(3454698..3455006) Nocardioides sp. JS614 4599114 YP_924442.1 CDS rnhB NC_008699.1 3455003 3455725 R RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII complement(3455003..3455725) Nocardioides sp. JS614 4599115 YP_924443.1 CDS Noca_3254 NC_008699.1 3455747 3456550 R TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; KEGG: sco:SCO5597 putative signal peptidase I; signal peptidase I complement(3455747..3456550) Nocardioides sp. JS614 4599116 YP_924444.1 CDS rplS NC_008699.1 3456587 3456937 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(3456587..3456937) Nocardioides sp. JS614 4599117 YP_924445.1 CDS Noca_3256 NC_008699.1 3457126 3458283 R KEGG: lxx:Lxx14850 tRNA-(guanine-N1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: GCN5-related N-acetyltransferase; tRNA (guanine-N1-)-methyltransferase; tRNA (Guanine37-N1) methyltransferase complement(3457126..3458283) Nocardioides sp. JS614 4599118 YP_924446.1 CDS Noca_3257 NC_008699.1 3458283 3458837 R TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: tfu:Tfu_0664 16S rRNA processing protein RimM; 16S rRNA processing protein RimM complement(3458283..3458837) Nocardioides sp. JS614 4599119 YP_924447.1 CDS Noca_3258 NC_008699.1 3458842 3459522 R PFAM: GCN5-related N-acetyltransferase; KEGG: mbo:Mb0825c hypothetical protein; N-acetyltransferase GCN5 complement(3458842..3459522) Nocardioides sp. JS614 4599120 YP_924448.1 CDS Noca_3259 NC_008699.1 3459634 3459876 R KEGG: sma:SAV2643 hypothetical protein; hypothetical protein complement(3459634..3459876) Nocardioides sp. JS614 4599121 YP_924449.1 CDS Noca_3260 NC_008699.1 3459882 3461279 R PFAM: ribosomal protein S16; KEGG: rha:RHA1_ro06535 30S ribosomal protein S16; 30S ribosomal protein S16 complement(3459882..3461279) Nocardioides sp. JS614 4599122 YP_924450.1 CDS Noca_3261 NC_008699.1 3461515 3462402 D PFAM: response regulator receiver; KEGG: sco:SCO3741 putative response regulator; response regulator receiver 3461515..3462402 Nocardioides sp. JS614 4599123 YP_924451.1 CDS Noca_3262 NC_008699.1 3462411 3463496 R PFAM: amidohydrolase; KEGG: sma:SAV6403 hypothetical protein; amidohydrolase complement(3462411..3463496) Nocardioides sp. JS614 4599124 YP_924452.1 CDS Noca_3263 NC_008699.1 3463557 3465593 R PFAM: glycoside hydrolase, family 3 domain protein; KEGG: sma:SAV2708 putative glycosyl hydrolase; beta-glucosidase complement(3463557..3465593) Nocardioides sp. JS614 4599125 YP_924453.1 CDS Noca_3264 NC_008699.1 3465735 3466898 D PFAM: ROK family protein; KEGG: sma:SAV2248 ROK-family transcriptional regulator; ROK family protein 3465735..3466898 Nocardioides sp. JS614 4599126 YP_924454.1 CDS Noca_3265 NC_008699.1 3466919 3467287 R KEGG: rha:RHA1_ro00122 hypothetical protein; hypothetical protein complement(3466919..3467287) Nocardioides sp. JS614 4599127 YP_924455.1 CDS Noca_3266 NC_008699.1 3467498 3469069 R KEGG: sma:SAV2648 putative signal recognition particle; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54, G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase; signal recognition particle subunit FFH/SRP54 (srp54) complement(3467498..3469069) Nocardioides sp. JS614 4599128 YP_924456.1 CDS Noca_3267 NC_008699.1 3469207 3471330 R catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; also involved in adenylylating and deadelnylyating GlnK; PII uridylyl-transferase complement(3469207..3471330) Nocardioides sp. JS614 4599129 YP_924457.1 CDS Noca_3268 NC_008699.1 3471509 3471847 R PFAM: nitrogen regulatory protein P-II; KEGG: sco:SCO5584 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II complement(3471509..3471847) Nocardioides sp. JS614 4599130 YP_924458.1 CDS Noca_3269 NC_008699.1 3471844 3473169 R TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: rha:RHA1_ro06530 ammonium transporter; ammonium transporter complement(3471844..3473169) Nocardioides sp. JS614 4599131 YP_924459.1 CDS Noca_3270 NC_008699.1 3473350 3474480 R KEGG: sco:SCO5580 putative prokaryotic docking protein; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY complement(3473350..3474480) Nocardioides sp. JS614 4599132 YP_924460.1 CDS Noca_3271 NC_008699.1 3474520 3474774 R hypothetical protein complement(3474520..3474774) Nocardioides sp. JS614 4599133 YP_924461.1 CDS Noca_3272 NC_008699.1 3474866 3475315 R PFAM: thioesterase superfamily protein; KEGG: bur:Bcep18194_A4557 thioesterase superfamily; thioesterase superfamily protein complement(3474866..3475315) Nocardioides sp. JS614 4599134 YP_924462.1 CDS Noca_3273 NC_008699.1 3475315 3478881 R TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: sma:SAV2658 putative chromosome segregation protein; condensin subunit Smc complement(3475315..3478881) Nocardioides sp. JS614 4599135 YP_924463.1 CDS Noca_3274 NC_008699.1 3479149 3480318 R PFAM: aminotransferase, class V; KEGG: hma:rrnAC1999 aminotransferase class V; alanine-glyoxylate aminotransferase complement(3479149..3480318) Nocardioides sp. JS614 4599136 YP_924464.1 CDS Noca_3275 NC_008699.1 3480471 3481688 R TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: fra:Francci3_3430 putative transposase, IS891/IS1136/IS1341; transposase complement(3480471..3481688) Nocardioides sp. JS614 4599137 YP_924465.1 CDS Noca_3276 NC_008699.1 3482304 3483038 D KEGG: sco:SCO1931 hypothetical protein; hypothetical protein 3482304..3483038 Nocardioides sp. JS614 4599138 YP_924466.1 CDS Noca_3277 NC_008699.1 3483153 3484514 R PFAM: FAD linked oxidase domain protein; KEGG: rha:RHA1_ro01589 probable glycolate oxidase FAD-linked subunit; FAD linked oxidase domain-containing protein complement(3483153..3484514) Nocardioides sp. JS614 4599139 YP_924467.1 CDS Noca_3278 NC_008699.1 3484532 3485779 R PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1; KEGG: sma:SAV6301 antibiotic transport protein; major facilitator transporter complement(3484532..3485779) Nocardioides sp. JS614 4599140 YP_924468.1 CDS Noca_3279 NC_008699.1 3485792 3487297 R hypothetical protein complement(3485792..3487297) Nocardioides sp. JS614 4599141 YP_924469.1 CDS Noca_3280 NC_008699.1 3487632 3488519 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase complement(3487632..3488519) Nocardioides sp. JS614 4599142 YP_924470.1 CDS Noca_3281 NC_008699.1 3488533 3489363 R PFAM: ribonuclease III; double-stranded RNA binding domain protein; KEGG: sma:SAV2665 putative ribonuclease III; ribonuclease III complement(3488533..3489363) Nocardioides sp. JS614 4599143 YP_924471.1 CDS Noca_3282 NC_008699.1 3489513 3490091 R PFAM: protein of unknown function DUF177; KEGG: tfu:Tfu_0649 conserved hypothetical protein; hypothetical protein complement(3489513..3490091) Nocardioides sp. JS614 4599144 YP_924472.1 CDS Noca_3283 NC_008699.1 3490150 3490629 R KEGG: rha:RHA1_ro06519 pantetheine-phosphate adenylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain; PFAM: cytidylyltransferase; pantetheine-phosphate adenylyltransferase complement(3490150..3490629) Nocardioides sp. JS614 4599145 YP_924473.1 CDS Noca_3284 NC_008699.1 3490639 3491235 R TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: tfu:Tfu_0647 conserved hypothetical protein 95; putative methyltransferase complement(3490639..3491235) Nocardioides sp. JS614 4599146 YP_924474.1 CDS Noca_3285 NC_008699.1 3491243 3493495 R KEGG: sco:SCO5566 putative ATP-dependent DNA helicase; TIGRFAM: ATP-dependent DNA helicase RecG; PFAM: helicase domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; ATP-dependent DNA helicase RecG complement(3491243..3493495) Nocardioides sp. JS614 4599147 YP_924475.1 CDS Noca_3286 NC_008699.1 3493505 3495163 R PFAM: Dak phosphatase; KEGG: sco:SCO5565 hypothetical protein; Dak phosphatase complement(3493505..3495163) Nocardioides sp. JS614 4599148 YP_924476.1 CDS Noca_3287 NC_008699.1 3495346 3495531 D PFAM: ribosomal protein L28; KEGG: sco:SCO5564 putative 50S ribosomal protein L28; 50S ribosomal protein L28 3495346..3495531 Nocardioides sp. JS614 4598159 YP_924477.1 CDS Noca_3288 NC_008699.1 3495603 3496553 R catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase complement(3495603..3496553) Nocardioides sp. JS614 4598160 YP_924478.1 CDS Noca_3289 NC_008699.1 3496657 3496893 D PFAM: regulatory protein, AsnC/Lrp family; KEGG: fal:FRAAL5817 hypothetical protein; AsnC family transcriptional regulator 3496657..3496893 Nocardioides sp. JS614 4598161 YP_924479.1 CDS Noca_3290 NC_008699.1 3496906 3497430 D KEGG: tfu:Tfu_0641 hypothetical protein; hypothetical protein 3496906..3497430 Nocardioides sp. JS614 4598162 YP_924480.1 CDS Noca_3291 NC_008699.1 3497459 3498580 R TIGRFAM: D-alanine--D-alanine ligase; PFAM: ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; D-alanine--D-alanine ligase domain protein; KEGG: sco:SCO5560 D-alanine-D-alanine ligase; D-alanine--D-alanine ligase complement(3497459..3498580) Nocardioides sp. JS614 4598163 YP_924481.1 CDS Noca_3292 NC_008699.1 3498613 3499692 D PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: cgb:cg3086 putative L,L-cystathionine gamma-lyase; Cys/Met metabolism pyridoxal-phosphate-dependent protein 3498613..3499692 Nocardioides sp. JS614 4598164 YP_924482.1 CDS Noca_3293 NC_008699.1 3499740 3500747 R PFAM: NADP oxidoreductase, coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE, N-terminal domain protein; KEGG: sma:SAV2680 putative glycerol-3-phosphate dehydrogenase, NAD(P)H-dependent; glycerol-3-phosphate dehydrogenase (NAD(P)(+)) complement(3499740..3500747) Nocardioides sp. JS614 4598165 YP_924483.1 CDS Noca_3294 NC_008699.1 3500744 3501547 R PFAM: phospholipid/glycerol acyltransferase; KEGG: sco:SCO5558 acyltransferase; phospholipid/glycerol acyltransferase complement(3500744..3501547) Nocardioides sp. JS614 4598166 YP_924484.1 CDS Noca_3295 NC_008699.1 3501638 3502273 D KEGG: sco:SCO5557a hypothetical protein; hypothetical protein 3501638..3502273 Nocardioides sp. JS614 4598167 YP_924485.1 CDS Noca_3296 NC_008699.1 3502342 3502950 R PFAM: histone family protein DNA-binding protein; KEGG: mpa:MAP3024c HupB; nucleoid protein Hbs complement(3502342..3502950) Nocardioides sp. JS614 4598168 YP_924486.1 CDS Noca_3297 NC_008699.1 3503181 3503789 R KEGG: rha:RHA1_ro06500 3-isopropylmalate dehydratase small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; 3-isopropylmalate dehydratase small subunit complement(3503181..3503789) Nocardioides sp. JS614 4598169 YP_924487.1 CDS Noca_3298 NC_008699.1 3503791 3505206 R TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: aconitate hydratase domain protein; KEGG: sco:SCO5553 3-isopropylmalate dehydratase large subunit; 3-isopropylmalate dehydratase large subunit complement(3503791..3505206) Nocardioides sp. JS614 4598170 YP_924488.1 CDS Noca_3299 NC_008699.1 3505319 3506041 D PFAM: regulatory proteins, IclR; KEGG: sma:SAV2687 IclR-family transcriptional regulator; regulatory proteins IclR 3505319..3506041 Nocardioides sp. JS614 4598171 YP_924489.1 CDS Noca_3300 NC_008699.1 3506105 3506584 R KEGG: pat:Patl_3876 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; methylated-DNA--protein-cysteine methyltransferase complement(3506105..3506584) Nocardioides sp. JS614 4598172 YP_924490.1 CDS Noca_3301 NC_008699.1 3506586 3508070 R PFAM: helix-turn-helix- domain containing protein, AraC type; HhH-GPD family protein; Ada, metal-binding domain protein; AlkA domain protein; KEGG: sco:SCO6461 putative ADA-like regulatory protein; DNA-3-methyladenine glycosylase II / transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase complement(3506586..3508070) Nocardioides sp. JS614 4598173 YP_924491.1 CDS Noca_3302 NC_008699.1 3508257 3509477 D TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: sco:SCO3042 transcriptional regulator; cell envelope-related transcriptional attenuator 3508257..3509477 Nocardioides sp. JS614 4598174 YP_924492.1 CDS Noca_3303 NC_008699.1 3509518 3510468 R PFAM: Bile acid:sodium symporter; KEGG: rpe:RPE_3198 bile acid:sodium symporter; bile acid:sodium symporter complement(3509518..3510468) Nocardioides sp. JS614 4598175 YP_924493.1 CDS Noca_3304 NC_008699.1 3510465 3511205 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: sil:SPO0795 oxidoreductase, short chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR complement(3510465..3511205) Nocardioides sp. JS614 4598176 YP_924494.1 CDS Noca_3305 NC_008699.1 3511207 3512151 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: rpe:RPE_3197 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(3511207..3512151) Nocardioides sp. JS614 4598177 YP_924495.1 CDS Noca_3306 NC_008699.1 3512158 3513924 R PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: afu:AF2100 acetolactate synthase large subunit; thiamine pyrophosphate binding domain-containing protein complement(3512158..3513924) Nocardioides sp. JS614 4600198 YP_924496.1 CDS Noca_3307 NC_008699.1 3514040 3515146 D KEGG: mpa:MAP3677 hypothetical protein; hypothetical protein 3514040..3515146 Nocardioides sp. JS614 4600199 YP_924497.1 CDS Noca_3308 NC_008699.1 3515182 3515901 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pol:Bpro_2645 methyltransferase type 11; type 11 methyltransferase complement(3515182..3515901) Nocardioides sp. JS614 4600200 YP_924498.1 CDS Noca_3309 NC_008699.1 3515972 3516550 R KEGG: fal:FRAAL0869 hypothetical protein; peroxiredoxins-like protein complement(3515972..3516550) Nocardioides sp. JS614 4600201 YP_924499.1 CDS Noca_3310 NC_008699.1 3516608 3518146 R PFAM: regulatory protein, LuxR; metal-dependent phosphohydrolase, HD sub domain; Bacterio-opsin activator, HTH domain protein; KEGG: rha:RHA1_ro06927 hypothetical protein; regulatory protein LuxR complement(3516608..3518146) Nocardioides sp. JS614 4600202 YP_924500.1 CDS Noca_3311 NC_008699.1 3518334 3519443 D TIGRFAM: uncharacterized enzyme; PFAM: glutamate--cysteine ligase, GCS2; KEGG: cef:CE2886 hypothetical protein; hypothetical protein 3518334..3519443 Nocardioides sp. JS614 4600203 YP_924501.1 CDS Noca_3312 NC_008699.1 3519450 3520565 R KEGG: rxy:Rxyl_1168 peptidase M29, aminopeptidase II; leucyl aminopeptidase complement(3519450..3520565) Nocardioides sp. JS614 4600204 YP_924502.1 CDS Noca_3313 NC_008699.1 3520562 3522073 R PFAM: carbohydrate kinase, FGGY; KEGG: rde:RD1_3760 xylulose kinase, putative; carbohydrate kinase complement(3520562..3522073) Nocardioides sp. JS614 4600205 YP_924503.1 CDS Noca_3314 NC_008699.1 3522073 3522879 R PFAM: photosystem I assembly BtpA; KEGG: mmc:Mmcs_2423 photosystem I assembly BtpA; photosystem I assembly BtpA complement(3522073..3522879) Nocardioides sp. JS614 4600206 YP_924504.1 CDS Noca_3315 NC_008699.1 3522950 3523573 R PFAM: Dak phosphatase; KEGG: tfu:Tfu_1716 glycerone kinase; Dak phosphatase complement(3522950..3523573) Nocardioides sp. JS614 4600207 YP_924505.1 CDS Noca_3316 NC_008699.1 3523577 3524578 R PFAM: Dak kinase; KEGG: tfu:Tfu_1716 glycerone kinase; Glycerone kinase complement(3523577..3524578) Nocardioides sp. JS614 4600208 YP_924506.1 CDS Noca_3317 NC_008699.1 3524593 3525687 R PFAM: inner-membrane translocator; KEGG: atc:AGR_L_81 putative permease component of transport system, probably ribose specific; inner-membrane translocator complement(3524593..3525687) Nocardioides sp. JS614 4600209 YP_924507.1 CDS Noca_3318 NC_008699.1 3525684 3526706 R PFAM: inner-membrane translocator; KEGG: atc:AGR_L_83 putative permease component of transport system, probably ribose specific; inner-membrane translocator complement(3525684..3526706) Nocardioides sp. JS614 4600210 YP_924508.1 CDS Noca_3319 NC_008699.1 3526703 3528202 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: atc:AGR_L_85 ABC transporter ATP binding protein; ABC transporter-like protein complement(3526703..3528202) Nocardioides sp. JS614 4600211 YP_924509.1 CDS Noca_3320 NC_008699.1 3528281 3529327 R KEGG: bxe:Bxe_C1270 ABC sugar transporter, periplasmic ligand binding protein; ABC sugar transporter, periplasmic ligand binding protein complement(3528281..3529327) Nocardioides sp. JS614 4600212 YP_924510.1 CDS Noca_3321 NC_008699.1 3529520 3530257 D PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: rha:RHA1_ro11060 transcriptional regulator, DeoR family; DeoR family transcriptional regulator 3529520..3530257 Nocardioides sp. JS614 4600213 YP_924511.1 CDS Noca_3322 NC_008699.1 3530390 3531406 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pto:PTO1249 alcohol dehydrogenase; alcohol dehydrogenase complement(3530390..3531406) Nocardioides sp. JS614 4600214 YP_924512.1 CDS Noca_3323 NC_008699.1 3531514 3532533 R PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: gvi:glr1554 probable serine proteinase; peptidase S8/S53 subtilisin kexin sedolisin complement(3531514..3532533) Nocardioides sp. JS614 4600215 YP_924513.1 CDS Noca_3324 NC_008699.1 3532686 3532991 R KEGG: sus:Acid_1047 conserved hypothetical cytosolic protein; hypothetical protein complement(3532686..3532991) Nocardioides sp. JS614 4600216 YP_924514.1 CDS Noca_3325 NC_008699.1 3533097 3533375 D TIGRFAM: prevent-host-death family protein; KEGG: fra:Francci3_0142 prevent-host-death protein; prevent-host-death family protein 3533097..3533375 Nocardioides sp. JS614 4600217 YP_924515.1 CDS Noca_3326 NC_008699.1 3533365 3533796 D PFAM: PilT protein domain protein; KEGG: fra:Francci3_0141 PilT protein-like; PilT domain-containing protein 3533365..3533796 Nocardioides sp. JS614 4600218 YP_924516.1 CDS Noca_3327 NC_008699.1 3533876 3534355 D PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: rxy:Rxyl_1758 alcohol dehydrogenase, zinc-binding protein; alcohol dehydrogenase 3533876..3534355 Nocardioides sp. JS614 4600219 YP_924517.1 CDS Noca_3328 NC_008699.1 3534418 3535050 D PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rxy:Rxyl_0122 methyltransferase type 11; phosphatidylethanolamine N-methyltransferase/phosphatidyl-N-methylethanolamine N-methyltransferase 3534418..3535050 Nocardioides sp. JS614 4600220 YP_924518.1 CDS Noca_3329 NC_008699.1 3535186 3535590 D PFAM: DoxX family protein; KEGG: mxa:MXAN_6975 DoxX family protein; DoxX family protein 3535186..3535590 Nocardioides sp. JS614 4600221 YP_924519.1 CDS Noca_3330 NC_008699.1 3535618 3537567 R KEGG: sru:SRU_0851 hypothetical protein; hypothetical protein complement(3535618..3537567) Nocardioides sp. JS614 4600222 YP_924520.1 CDS Noca_3331 NC_008699.1 3537773 3538273 D SMART: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 3537773..3538273 Nocardioides sp. JS614 4600223 YP_924521.1 CDS Noca_3332 NC_008699.1 3538273 3538836 D KEGG: mbo:Mb0764c hypothetical protein; hypothetical protein 3538273..3538836 Nocardioides sp. JS614 4600224 YP_924522.1 CDS Noca_3333 NC_008699.1 3538850 3539398 D KEGG: mmc:Mmcs_4828 phage integrase; hypothetical protein 3538850..3539398 Nocardioides sp. JS614 4600225 YP_924523.1 CDS Noca_3334 NC_008699.1 3539395 3539598 D KEGG: cdi:DIP0182 putative phage integrase; hypothetical protein 3539395..3539598 Nocardioides sp. JS614 4600226 YP_924524.1 CDS Noca_3335 NC_008699.1 3539943 3540935 R PFAM: Abortive infection protein; KEGG: pac:PPA1365 conserved protein YyaK; abortive infection protein complement(3539943..3540935) Nocardioides sp. JS614 4600229 YP_924525.1 CDS gltX NC_008699.1 3540928 3542403 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(3540928..3542403) Nocardioides sp. JS614 4600230 YP_924526.1 CDS Noca_3337 NC_008699.1 3542411 3543220 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: pac:PPA1366 putative 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; 5-carboxymethyl-2-hydroxymuconate delta-isomerase complement(3542411..3543220) Nocardioides sp. JS614 4600231 YP_924527.1 CDS Noca_3338 NC_008699.1 3543251 3545620 R PFAM: peptidase S45, penicillin amidase; KEGG: dra:DRA0255 aculeacin A acylase; peptidase S45, penicillin amidase complement(3543251..3545620) Nocardioides sp. JS614 4600232 YP_924528.1 CDS Noca_3339 NC_008699.1 3545684 3546286 R PFAM: MOSC domain containing protein; KEGG: rpe:RPE_1637 MOSC domain containing protein; MOSC domain-containing protein complement(3545684..3546286) Nocardioides sp. JS614 4600233 YP_924529.1 CDS Noca_3340 NC_008699.1 3546320 3547231 D KEGG: nfa:nfa25070 hypothetical protein; hypothetical protein 3546320..3547231 Nocardioides sp. JS614 4600234 YP_924530.1 CDS Noca_3341 NC_008699.1 3547236 3547703 R PFAM: CoA-binding domain protein; KEGG: sus:Acid_0397 CoA-binding protein; CoA-binding domain-containing protein complement(3547236..3547703) Nocardioides sp. JS614 4600235 YP_924531.1 CDS Noca_3342 NC_008699.1 3548099 3548383 D PFAM: Excalibur domain protein; KEGG: bld:BLi04157 YhjA; Excalibur domain-containing protein 3548099..3548383 Nocardioides sp. JS614 4598740 YP_924532.1 CDS Noca_3343 NC_008699.1 3548431 3549033 D PFAM: dienelactone hydrolase; KEGG: ret:RHE_CH02612 hypothetical protein; dienelactone hydrolase 3548431..3549033 Nocardioides sp. JS614 4598741 YP_924533.1 CDS Noca_3344 NC_008699.1 3549040 3549561 D KEGG: bcn:Bcen_5567 hypothetical protein; hypothetical protein 3549040..3549561 Nocardioides sp. JS614 4598742 YP_924534.1 CDS Noca_3345 NC_008699.1 3549567 3550133 D PFAM: peptidase M23B; KEGG: syf:Synpcc7942_0344 probable peptidase; peptidase M23B 3549567..3550133 Nocardioides sp. JS614 4598743 YP_924535.1 CDS Noca_3346 NC_008699.1 3550130 3550399 D KEGG: dra:DR0234 hypothetical protein; hypothetical protein 3550130..3550399 Nocardioides sp. JS614 4598744 YP_924536.1 CDS Noca_3347 NC_008699.1 3550396 3550977 D PFAM: pentapeptide repeat protein; KEGG: fal:FRAAL1624 hypothetical protein; putative pentapeptide repeat domain; pentapeptide repeat-containing protein 3550396..3550977 Nocardioides sp. JS614 4598745 YP_924537.1 CDS Noca_3348 NC_008699.1 3550987 3551544 R PFAM: regulatory protein, TetR; Tetracyclin repressor domain protein; KEGG: mmc:Mmcs_3074 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(3550987..3551544) Nocardioides sp. JS614 4598746 YP_924538.1 CDS Noca_3349 NC_008699.1 3551662 3552285 D PFAM: BioY protein; KEGG: cef:CE1851 putative biotin synthase; BioY protein 3551662..3552285 Nocardioides sp. JS614 4598747 YP_924539.1 CDS Noca_3350 NC_008699.1 3552291 3552983 D PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: cjk:jk1119 ABC-type cobalt transport system ATPase component; ABC transporter-like protein 3552291..3552983 Nocardioides sp. JS614 4598748 YP_924540.1 CDS Noca_3351 NC_008699.1 3552980 3553594 D PFAM: cobalt transport protein; KEGG: rha:RHA1_ro05259 hypothetical protein; cobalt transport protein 3552980..3553594 Nocardioides sp. JS614 4598749 YP_924541.1 CDS Noca_3352 NC_008699.1 3553626 3554312 R KEGG: rha:RHA1_ro04234 possible transcriptional regulator; putative transcriptional regulator complement(3553626..3554312) Nocardioides sp. JS614 4598750 YP_924542.1 CDS Noca_3353 NC_008699.1 3554438 3554878 D KEGG: rha:RHA1_ro04235 possible membrane protein; hypothetical protein 3554438..3554878 Nocardioides sp. JS614 4598751 YP_924543.1 CDS Noca_3354 NC_008699.1 3554875 3555534 D PFAM: GTP cyclohydrolase I; KEGG: nfa:nfa31470 putative GTP cyclohydrolase I; GTP cyclohydrolase 3554875..3555534 Nocardioides sp. JS614 4598752 YP_924544.1 CDS Noca_3355 NC_008699.1 3555531 3556709 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: sco:SCO7117 ferredoxin reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 3555531..3556709 Nocardioides sp. JS614 4598753 YP_924545.1 CDS Noca_3356 NC_008699.1 3556711 3557367 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: fal:FRAAL2466 putative short chain dehydrogenase; short-chain dehydrogenase/reductase SDR complement(3556711..3557367) Nocardioides sp. JS614 4598754 YP_924546.1 CDS Noca_3357 NC_008699.1 3557383 3557904 R PFAM: GCN5-related N-acetyltransferase; KEGG: mmc:Mmcs_0265 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(3557383..3557904) Nocardioides sp. JS614 4598755 YP_924547.1 CDS Noca_3358 NC_008699.1 3557909 3559321 R PFAM: Amidase; KEGG: tfu:Tfu_2207 amidase; amidase complement(3557909..3559321) Nocardioides sp. JS614 4598756 YP_924548.1 CDS Noca_3359 NC_008699.1 3559367 3559918 R PFAM: NADPH-dependent FMN reductase; KEGG: sma:SAV7045 reductase; NADPH-dependent FMN reductase complement(3559367..3559918) Nocardioides sp. JS614 4598757 YP_924549.1 CDS Noca_3360 NC_008699.1 3559985 3560611 D PFAM: regulatory protein, TetR; KEGG: rha:RHA1_ro06435 possible transcriptional regulator, TetR family; regulatory protein TetR 3559985..3560611 Nocardioides sp. JS614 4598758 YP_924550.1 CDS Noca_3361 NC_008699.1 3560696 3561115 R hypothetical protein complement(3560696..3561115) Nocardioides sp. JS614 4598759 YP_924551.1 CDS Noca_3362 NC_008699.1 3561135 3562556 R PFAM: aminotransferase, class V; Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: sth:STH3269 arginine/lysine/ornithine decarboxylase; Orn/Lys/Arg decarboxylase, major region complement(3561135..3562556) Nocardioides sp. JS614 4598760 YP_924552.1 CDS Noca_3363 NC_008699.1 3562546 3563673 R PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: sru:SRU_2799 acetylornithine deacetylase; acetylornithine deacetylase complement(3562546..3563673) Nocardioides sp. JS614 4598761 YP_924553.1 CDS Noca_3364 NC_008699.1 3563696 3565288 R KEGG: sco:SCO5529 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; putative alpha-isopropylmalate/homocitrate synthase family transferase complement(3563696..3565288) Nocardioides sp. JS614 4598762 YP_924554.1 CDS Noca_3365 NC_008699.1 3565382 3567019 R PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: tfu:Tfu_0592 tyrosine protein kinase:serine/threonine protein kinase; protein kinase complement(3565382..3567019) Nocardioides sp. JS614 4598763 YP_924555.1 CDS Noca_3367 NC_008699.1 3567527 3568600 R KEGG: xcb:XC_3380 branched-chain amino acid aminotransferase; TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase, class IV; branched chain amino acid aminotransferase complement(3567527..3568600) Nocardioides sp. JS614 4598765 YP_924556.1 CDS Noca_3368 NC_008699.1 3568764 3570200 R PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: sco:SCO5522 3-isopropylmalate dehydrogenase; 3-isopropylmalate dehydrogenase complement(3568764..3570200) Nocardioides sp. JS614 4598766 YP_924557.1 CDS Noca_3369 NC_008699.1 3570376 3570942 D KEGG: dra:DR0603 cytidine/deoxycytidylate deaminase/NUDIX/methyltransferase domains protein; cytidine/deoxycytidylate deaminase/NUDIX/methyltransferase domain-containing protein 3570376..3570942 Nocardioides sp. JS614 4598767 YP_924558.1 CDS Noca_3370 NC_008699.1 3571248 3571850 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mmc:Mmcs_1188 methyltransferase type 11; type 12 methyltransferase complement(3571248..3571850) Nocardioides sp. JS614 4598768 YP_924559.1 CDS Noca_3371 NC_008699.1 3571889 3572374 R KEGG: nfa:nfa32370 hypothetical protein; hypothetical protein complement(3571889..3572374) Nocardioides sp. JS614 4598769 YP_924560.1 CDS Noca_3372 NC_008699.1 3572383 3573069 R PFAM: protein of unknown function DUF161; KEGG: sco:SCO1418 integral membrane protein; hypothetical protein complement(3572383..3573069) Nocardioides sp. JS614 4598770 YP_924561.1 CDS Noca_3373 NC_008699.1 3573131 3574567 D PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: rha:RHA1_ro05556 transcriptional regulator/aminotransferase; GntR family transcriptional regulator 3573131..3574567 Nocardioides sp. JS614 4598771 YP_924562.1 CDS Noca_3374 NC_008699.1 3574585 3575064 R PFAM: regulatory protein, MarR; KEGG: fal:FRAAL1706 putative MarR-family transcriptional regulator; MarR family transcriptional regulator complement(3574585..3575064) Nocardioides sp. JS614 4598772 YP_924563.1 CDS Noca_3375 NC_008699.1 3575057 3575983 R PFAM: luciferase family protein; KEGG: rxy:Rxyl_3088 luciferase-like protein; luciferase family protein complement(3575057..3575983) Nocardioides sp. JS614 4598773 YP_924564.1 CDS Noca_3376 NC_008699.1 3575980 3578160 R PFAM: FAD linked oxidase domain protein; KEGG: rxy:Rxyl_3087 FAD linked oxidase-like protein; FAD linked oxidase domain-containing protein complement(3575980..3578160) Nocardioides sp. JS614 4598774 YP_924565.1 CDS Noca_3377 NC_008699.1 3578283 3579269 D PFAM: 2-nitropropane dioxygenase, NPD; KEGG: mpa:MAP3628c hypothetical protein; 2-nitropropane dioxygenase 3578283..3579269 Nocardioides sp. JS614 4598775 YP_924566.1 CDS Noca_3378 NC_008699.1 3579593 3580930 R PFAM: purine catabolism PurC domain protein; KEGG: mmc:Mmcs_5287 transcriptional regulator, CdaR; purine catabolism PurC domain-containing protein complement(3579593..3580930) Nocardioides sp. JS614 4598776 YP_924567.1 CDS Noca_3379 NC_008699.1 3581120 3582637 D PFAM: amino acid permease-associated region; KEGG: mmc:Mmcs_5286 amino acid permease-associated region; amino acid permease-associated protein 3581120..3582637 Nocardioides sp. JS614 4598777 YP_924568.1 CDS Noca_3380 NC_008699.1 3582634 3583356 D PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: mmc:Mmcs_5285 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3582634..3583356 Nocardioides sp. JS614 4598178 YP_924569.1 CDS Noca_3381 NC_008699.1 3583356 3584129 D PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: mmc:Mmcs_5284 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3583356..3584129 Nocardioides sp. JS614 4598179 YP_924570.1 CDS Noca_3382 NC_008699.1 3584182 3585147 D TIGRFAM: putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: mmc:Mmcs_5283 agmatinase, putative; agmatinase 3584182..3585147 Nocardioides sp. JS614 4598180 YP_924571.1 CDS Noca_3383 NC_008699.1 3585144 3586043 D PFAM: polysaccharide deacetylase; KEGG: mmc:Mmcs_2257 polysaccharide deacetylase; polysaccharide deacetylase 3585144..3586043 Nocardioides sp. JS614 4598181 YP_924572.1 CDS Noca_3384 NC_008699.1 3586037 3587932 R PFAM: glycoside hydrolase, family 3 domain protein; KEGG: rxy:Rxyl_0629 beta-N-acetylhexosaminidase; glycoside hydrolase family 3 protein complement(3586037..3587932) Nocardioides sp. JS614 4598182 YP_924573.1 CDS Noca_3385 NC_008699.1 3588017 3589627 R catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase complement(3588017..3589627) Nocardioides sp. JS614 4598183 YP_924574.1 CDS Noca_3386 NC_008699.1 3589841 3591391 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV1689 ABC transporter ATP-binding protein; ABC transporter-like protein 3589841..3591391 Nocardioides sp. JS614 4598184 YP_924575.1 CDS Noca_3387 NC_008699.1 3591395 3591769 R KEGG: lxx:Lxx16280 putative iron-dependent peroxidase; putative iron-dependent peroxidase complement(3591395..3591769) Nocardioides sp. JS614 4598185 YP_924576.1 CDS Noca_3388 NC_008699.1 3591793 3592677 R PFAM: iron permease FTR1; KEGG: sco:SCO2277 high-affinity iron transporter; iron permease FTR1 complement(3591793..3592677) Nocardioides sp. JS614 4598186 YP_924577.1 CDS Noca_3389 NC_008699.1 3592731 3593438 R PFAM: DSBA oxidoreductase; KEGG: sco:SCO1869 hypothetical protein; DSBA oxidoreductase complement(3592731..3593438) Nocardioides sp. JS614 4598187 YP_924578.1 CDS Noca_3390 NC_008699.1 3593495 3594523 R catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase complement(3593495..3594523) Nocardioides sp. JS614 4598188 YP_924579.1 CDS ilvH NC_008699.1 3594569 3595123 R with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit complement(3594569..3595123) Nocardioides sp. JS614 4598189 YP_924580.1 CDS Noca_3392 NC_008699.1 3595120 3596877 R acetolactate synthase large subunit; catalyzes the formation of 2-acetolactate from pyruvate; acetolactate synthase 1 catalytic subunit complement(3595120..3596877) Nocardioides sp. JS614 4598190 YP_924581.1 CDS Noca_3393 NC_008699.1 3597102 3597776 R PFAM: transcriptional coactivator/pterin dehydratase; KEGG: cef:CE0476 putative pterin-4-alpha-carbinolamine dehydratase; pterin-4-alpha-carbinolamine dehydratase complement(3597102..3597776) Nocardioides sp. JS614 4598191 YP_924582.1 CDS Noca_3394 NC_008699.1 3597773 3598189 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pol:Bpro_0156 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(3597773..3598189) Nocardioides sp. JS614 4598192 YP_924583.1 CDS Noca_3395 NC_008699.1 3598226 3598573 D KEGG: rha:RHA1_ro04002 hypothetical protein; hypothetical protein 3598226..3598573 Nocardioides sp. JS614 4598193 YP_924584.1 CDS Noca_3396 NC_008699.1 3598679 3599884 R PFAM: aminotransferase, class V; KEGG: rha:RHA1_ro01800 kynureninase; kynureninase complement(3598679..3599884) Nocardioides sp. JS614 4598194 YP_924585.1 CDS Noca_3397 NC_008699.1 3599881 3601278 R TIGRFAM: xylulokinase; PFAM: carbohydrate kinase, FGGY; KEGG: rha:RHA1_ro02812 probable xylulokinase; xylulokinase complement(3599881..3601278) Nocardioides sp. JS614 4598195 YP_924586.1 CDS Noca_3398 NC_008699.1 3601340 3602224 D PFAM: Aldose 1-epimerase; KEGG: tfu:Tfu_1083 putative aldose-1-epimerase; aldose 1-epimerase 3601340..3602224 Nocardioides sp. JS614 4598196 YP_924587.1 CDS Noca_3400 NC_008699.1 3603372 3605057 R required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC complement(3603372..3605057) Nocardioides sp. JS614 4598198 YP_924588.1 CDS Noca_3401 NC_008699.1 3605057 3605869 R KEGG: rme:Rmet_0169 phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; phosphomethylpyrimidine kinase complement(3605057..3605869) Nocardioides sp. JS614 4598199 YP_924589.1 CDS Noca_3402 NC_008699.1 3605866 3606459 R PFAM: thiamine monophosphate synthase; KEGG: pca:Pcar_0607 thiamine-phosphate pyrophosphorylase; thiamine monophosphate synthase complement(3605866..3606459) Nocardioides sp. JS614 4598200 YP_924590.1 CDS thiG NC_008699.1 3606456 3607214 R functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase complement(3606456..3607214) Nocardioides sp. JS614 4598201 YP_924591.1 CDS Noca_3404 NC_008699.1 3607220 3607408 R TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: sma:SAV6094 thiamine biosynthesis ThiS; thiamine biosynthesis protein ThiS complement(3607220..3607408) Nocardioides sp. JS614 4598202 YP_924592.1 CDS Noca_3405 NC_008699.1 3607405 3608520 R TIGRFAM: glycine oxidase ThiO; PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sco:SCO2107 putative oxidoreductase; glycine oxidase ThiO complement(3607405..3608520) Nocardioides sp. JS614 4598203 YP_924593.1 CDS Noca_3406 NC_008699.1 3608517 3609128 R KEGG: dde:Dde_1379 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase complement(3608517..3609128) Nocardioides sp. JS614 4598204 YP_924594.1 CDS Noca_3407 NC_008699.1 3609492 3610160 R TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase; KEGG: fra:Francci3_2878 Cob(II)yrinic acid a,c-diamide reductase; cob(II)yrinic acid a,c-diamide reductase complement(3609492..3610160) Nocardioides sp. JS614 4598205 YP_924595.1 CDS Noca_3408 NC_008699.1 3610160 3610933 R TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: nfa:nfa50340 putative methyltransferase; precorrin-4 C(11)-methyltransferase complement(3610160..3610933) Nocardioides sp. JS614 4598206 YP_924596.1 CDS Noca_3409 NC_008699.1 3610930 3612510 R TIGRFAM: precorrin-3B C17-methyltransferase; precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: tfu:Tfu_0316 precorrin-3B C17-methyltransferase region:precorrin-2 C20-methyltransferase; precorrin-3 methyltransferase / precorrin-2 C20-methyltransferase complement(3610930..3612510) Nocardioides sp. JS614 4598207 YP_924597.1 CDS Noca_3410 NC_008699.1 3612507 3612719 R hypothetical protein complement(3612507..3612719) Nocardioides sp. JS614 4598208 YP_924598.1 CDS Noca_3411 NC_008699.1 3612716 3613339 R KEGG: tfu:Tfu_0318 cobalamin biosynthesis protein CobG, precorrin-3B synthase; cobalamin biosynthesis protein CobG complement(3612716..3613339) Nocardioides sp. JS614 4598209 YP_924599.1 CDS Noca_3412 NC_008699.1 3613336 3614181 R TIGRFAM: dethiobiotin synthase; KEGG: rha:RHA1_ro01053 dethiobiotin synthetase; dethiobiotin synthase complement(3613336..3614181) Nocardioides sp. JS614 4598210 YP_924600.1 CDS Noca_3413 NC_008699.1 3614178 3615320 R catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase complement(3614178..3615320) Nocardioides sp. JS614 4598211 YP_924601.1 CDS Noca_3414 NC_008699.1 3615434 3616738 R TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: sco:SCO1245 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; adenosylmethionine-8-amino-7-oxononanoate aminotransferase complement(3615434..3616738) Nocardioides sp. JS614 4598212 YP_924602.1 CDS Noca_3415 NC_008699.1 3616735 3617859 R catalyzes the formation of biotin from dethiobiotin and sulfur 2 S-adenosyl-L-methionine; biotin synthase complement(3616735..3617859) Nocardioides sp. JS614 4598213 YP_924603.1 CDS Noca_3416 NC_008699.1 3618101 3618709 D PFAM: Berberine/berberine domain protein; KEGG: eba:ebA6736 probable FAD/FMN-containing oxidoreductase; berberine/berberine domain-containing protein 3618101..3618709 Nocardioides sp. JS614 4598214 YP_924604.1 CDS Noca_3417 NC_008699.1 3618735 3619493 D PFAM: Asp/Glu racemase; KEGG: dar:Daro_1336 hydantoin racemase; Asp/Glu racemase 3618735..3619493 Nocardioides sp. JS614 4598215 YP_924605.1 CDS Noca_3418 NC_008699.1 3620272 3620688 R hypothetical protein complement(3620272..3620688) Nocardioides sp. JS614 4598216 YP_924606.1 CDS Noca_3419 NC_008699.1 3621708 3623411 R catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase complement(3621708..3623411) Nocardioides sp. JS614 4598217 YP_924607.1 CDS Noca_3420 NC_008699.1 3623484 3624242 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pac:PPA1107 haloacid dehalogenase-like hydrolase; beta-phosphoglucomutase family hydrolase 3623484..3624242 Nocardioides sp. JS614 4598218 YP_924608.1 CDS Noca_3421 NC_008699.1 3624242 3626818 D PFAM: glycoside hydrolase, family 65 domain protein; glycoside hydrolase family 65, central catalytic; glycoside hydrolase family 65 domain protein; KEGG: pac:PPA1108 trehalose phosphorylase; Kojibiose phosphorylase 3624242..3626818 Nocardioides sp. JS614 4597237 YP_924609.1 CDS Noca_3422 NC_008699.1 3626712 3627761 R KEGG: bcz:BCZK2308 hypothetical protein; hypothetical protein complement(3626712..3627761) Nocardioides sp. JS614 4597238 YP_924610.1 CDS Noca_3423 NC_008699.1 3627856 3628353 R KEGG: nfa:nfa51460 hypothetical protein; hypothetical protein complement(3627856..3628353) Nocardioides sp. JS614 4597239 YP_924611.1 CDS Noca_3424 NC_008699.1 3628358 3629446 R KEGG: rha:RHA1_ro02402 hypothetical protein; hypothetical protein complement(3628358..3629446) Nocardioides sp. JS614 4597240 YP_924612.1 CDS Noca_3425 NC_008699.1 3629522 3630400 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: tfu:Tfu_1994 putative integral membrane protein; hypothetical protein 3629522..3630400 Nocardioides sp. JS614 4597241 YP_924613.1 CDS Noca_3426 NC_008699.1 3630511 3630732 D hypothetical protein 3630511..3630732 Nocardioides sp. JS614 4597242 YP_924614.1 CDS Noca_3427 NC_008699.1 3630779 3631693 D PFAM: alpha/beta hydrolase fold; KEGG: ade:Adeh_1736 alpha/beta hydrolase fold-1; alpha/beta hydrolase fold protein 3630779..3631693 Nocardioides sp. JS614 4597243 YP_924615.1 CDS Noca_3428 NC_008699.1 3631695 3632864 D PFAM: NHL repeat containing protein; glucose sorbosone dehydrogenase; KEGG: rha:RHA1_ro02468 possible glucose dehydrogenase; glucose sorbosone dehydrogenase 3631695..3632864 Nocardioides sp. JS614 4597244 YP_924616.1 CDS Noca_3429 NC_008699.1 3632851 3633672 R KEGG: sco:SCO2325 integral membrane protein; integral membrane protein complement(3632851..3633672) Nocardioides sp. JS614 4597245 YP_924617.1 CDS Noca_3430 NC_008699.1 3633669 3635261 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV5847 putative ABC transporter ATP-binding subunit; ABC transporter-like protein complement(3633669..3635261) Nocardioides sp. JS614 4597246 YP_924618.1 CDS Noca_3431 NC_008699.1 3635258 3636382 R PFAM: cobalt transport protein; KEGG: sma:SAV5848 integral membrane protein; cobalt transport protein complement(3635258..3636382) Nocardioides sp. JS614 4597247 YP_924619.1 CDS Noca_3432 NC_008699.1 3636379 3637242 R KEGG: syw:SYNW2303 hypothetical protein; hypothetical protein complement(3636379..3637242) Nocardioides sp. JS614 4597248 YP_924620.1 CDS Noca_3433 NC_008699.1 3637244 3638887 R KEGG: xac:XAC3546 outer membrane protein; hypothetical protein complement(3637244..3638887) Nocardioides sp. JS614 4597249 YP_924621.1 CDS Noca_3434 NC_008699.1 3639206 3640504 R PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: mtc:MT3905 IS1557, transposase; transposase, IS204/IS1001/IS1096/IS1165 family protein complement(3639206..3640504) Nocardioides sp. JS614 4597250 YP_924622.1 CDS gatB NC_008699.1 3640758 3642251 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(3640758..3642251) Nocardioides sp. JS614 4597251 YP_924623.1 CDS gatA NC_008699.1 3642248 3643768 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(3642248..3643768) Nocardioides sp. JS614 4597252 YP_924624.1 CDS Noca_3437 NC_008699.1 3643768 3644076 R TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase, C subunit; KEGG: tfu:Tfu_0605 glutamyl-tRNA(Gln) amidotransferase C subunit; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C complement(3643768..3644076) Nocardioides sp. JS614 4597253 YP_924625.1 CDS Noca_3438 NC_008699.1 3644276 3645613 D PFAM: aminotransferase, class V; KEGG: rha:RHA1_ro04390 probable cysteine desulfurase; cysteine desulfurase 3644276..3645613 Nocardioides sp. JS614 4597254 YP_924626.1 CDS Noca_3439 NC_008699.1 3645627 3645929 R hypothetical protein complement(3645627..3645929) Nocardioides sp. JS614 4597255 YP_924627.1 CDS Noca_3440 NC_008699.1 3646044 3648302 R KEGG: mbo:Mb3039c DNA ligase; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation; SMART: NAD-dependent DNA ligase-like; DNA ligase, NAD-dependent complement(3646044..3648302) Nocardioides sp. JS614 4597256 YP_924628.1 CDS Noca_3441 NC_008699.1 3648331 3648978 D PFAM: regulatory protein, TetR; KEGG: sco:SCO3167 TetR-family transcriptional regulator; TetR family transcriptional regulator 3648331..3648978 Nocardioides sp. JS614 4597257 YP_924629.1 CDS Noca_3442 NC_008699.1 3648978 3650570 D TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV3887 transmembrane efflux protein; EmrB/QacA family drug resistance transporter 3648978..3650570 Nocardioides sp. JS614 4597258 YP_924630.1 CDS Noca_3443 NC_008699.1 3650649 3651185 R TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: aba:Acid345_2316 peptidase C56, PfpI; PfpI family intracellular peptidase complement(3650649..3651185) Nocardioides sp. JS614 4597259 YP_924631.1 CDS Noca_3444 NC_008699.1 3651228 3652244 R PFAM: Methionine synthase, vitamin-B12 independent; KEGG: tfu:Tfu_0602 hypothetical protein; methionine synthase, vitamin-B12 independent complement(3651228..3652244) Nocardioides sp. JS614 4597260 YP_924632.1 CDS mnmA NC_008699.1 3652241 3653341 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(3652241..3653341) Nocardioides sp. JS614 4597261 YP_924633.1 CDS Noca_3446 NC_008699.1 3653349 3654548 R PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sma:SAV2756 putative pyridoxal-phosphate-dependent aminotransferase; class V aminotransferase complement(3653349..3654548) Nocardioides sp. JS614 4597262 YP_924634.1 CDS Noca_3447 NC_008699.1 3654628 3655230 R KEGG: sco:SCO3789 integral membrane protein; integral membrane protein complement(3654628..3655230) Nocardioides sp. JS614 4597263 YP_924635.1 CDS Noca_3448 NC_008699.1 3655266 3656381 R catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase complement(3655266..3656381) Nocardioides sp. JS614 4597264 YP_924636.1 CDS obgE NC_008699.1 3656400 3657950 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(3656400..3657950) Nocardioides sp. JS614 4597265 YP_924637.1 CDS rpmA NC_008699.1 3658048 3658302 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(3658048..3658302) Nocardioides sp. JS614 4597266 YP_924638.1 CDS rplU NC_008699.1 3658334 3658642 R PFAM: ribosomal protein L21; KEGG: pac:PPA0827 50S ribosomal protein L21; 50S ribosomal protein L21 complement(3658334..3658642) Nocardioides sp. JS614 4597267 YP_924639.1 CDS Noca_3452 NC_008699.1 3658808 3662020 R TIGRFAM: ribonuclease, Rne/Rng family; SMART: RNA binding S1 domain protein; KEGG: sma:SAV5465 hypothetical protein; ribonuclease G complement(3658808..3662020) Nocardioides sp. JS614 4597268 YP_924640.1 CDS Noca_3453 NC_008699.1 3662369 3663079 R KEGG: sma:SAV5464 hypothetical protein; hypothetical protein complement(3662369..3663079) Nocardioides sp. JS614 4597269 YP_924641.1 CDS Noca_3454 NC_008699.1 3663097 3664287 R KEGG: mmc:Mmcs_2986 hypothetical protein; hypothetical protein complement(3663097..3664287) Nocardioides sp. JS614 4597270 YP_924642.1 CDS Noca_3455 NC_008699.1 3664434 3665543 D PFAM: major facilitator superfamily MFS_1; KEGG: tfu:Tfu_1375 putative integral membrane transporter; major facilitator transporter 3664434..3665543 Nocardioides sp. JS614 4597271 YP_924643.1 CDS Noca_3456 NC_008699.1 3665660 3665986 D hypothetical protein 3665660..3665986 Nocardioides sp. JS614 4596237 YP_924644.1 CDS Noca_3457 NC_008699.1 3665976 3666206 D PFAM: CopG domain protein DNA-binding domain protein; CopG/DNA-binding domain-containing protein 3665976..3666206 Nocardioides sp. JS614 4596238 YP_924645.1 CDS Noca_3458 NC_008699.1 3666203 3666850 D PFAM: NUDIX hydrolase; KEGG: mmc:Mmcs_4021 NUDIX hydrolase; NUDIX hydrolase 3666203..3666850 Nocardioides sp. JS614 4596239 YP_924646.1 CDS Noca_3459 NC_008699.1 3666763 3668754 R PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sma:SAV5461 hypothetical protein; radical SAM domain-containing protein complement(3666763..3668754) Nocardioides sp. JS614 4596240 YP_924647.1 CDS Noca_3460 NC_008699.1 3668841 3669041 R hypothetical protein complement(3668841..3669041) Nocardioides sp. JS614 4596241 YP_924648.1 CDS Noca_3461 NC_008699.1 3669072 3670313 R TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: fal:FRAAL1920 rod shape-determining membrane protein; cell elongation; rod shape-determining protein RodA complement(3669072..3670313) Nocardioides sp. JS614 4596242 YP_924649.1 CDS Noca_3462 NC_008699.1 3670315 3672441 R PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: sma:SAV5458 penicillin-binding protein; peptidoglycan glycosyltransferase complement(3670315..3672441) Nocardioides sp. JS614 4596243 YP_924650.1 CDS Noca_3463 NC_008699.1 3672458 3672970 R KEGG: sco:SCO2609 rod shape-determining protein; rod shape-determining protein complement(3672458..3672970) Nocardioides sp. JS614 4596244 YP_924651.1 CDS Noca_3464 NC_008699.1 3672967 3673875 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(3672967..3673875) Nocardioides sp. JS614 4596245 YP_924652.1 CDS Noca_3465 NC_008699.1 3673875 3674903 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(3673875..3674903) Nocardioides sp. JS614 4596246 YP_924653.1 CDS ndk NC_008699.1 3675201 3675608 R catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase complement(3675201..3675608) Nocardioides sp. JS614 4596247 YP_924654.1 CDS Noca_3467 NC_008699.1 3675684 3676370 R KEGG: nfa:nfa50150 hypothetical protein; hypothetical protein complement(3675684..3676370) Nocardioides sp. JS614 4596248 YP_924655.1 CDS Noca_3468 NC_008699.1 3676441 3677766 D PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: nfa:nfa50160 putative transcriptional regulator; GntR family transcriptional regulator 3676441..3677766 Nocardioides sp. JS614 4596249 YP_924656.1 CDS Noca_3469 NC_008699.1 3677755 3678135 R KEGG: sma:SAV5453 hypothetical protein; hypothetical protein complement(3677755..3678135) Nocardioides sp. JS614 4596250 YP_924657.1 CDS Noca_3470 NC_008699.1 3678132 3679514 R TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: sma:SAV5452 putative folylpolyglutamate synthase; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase complement(3678132..3679514) Nocardioides sp. JS614 4596251 YP_924658.1 CDS Noca_3471 NC_008699.1 3679572 3680684 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rha:RHA1_ro04873 alcohol dehydrogenase; alcohol dehydrogenase 3679572..3680684 Nocardioides sp. JS614 4596252 YP_924659.1 CDS Noca_3472 NC_008699.1 3680662 3681567 R PFAM: GCN5-related N-acetyltransferase; KEGG: nfa:nfa46710 putative acetyltransferase; N-acetyltransferase GCN5 complement(3680662..3681567) Nocardioides sp. JS614 4596253 YP_924660.1 CDS valS NC_008699.1 3681647 3684262 D valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 3681647..3684262 Nocardioides sp. JS614 4596254 YP_924661.1 CDS Noca_3474 NC_008699.1 3684280 3684960 R KEGG: osa:4347106 Os09g0425200; hypothetical protein complement(3684280..3684960) Nocardioides sp. JS614 4596255 YP_924662.1 CDS clpX NC_008699.1 3685095 3686375 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(3685095..3686375) Nocardioides sp. JS614 4595572 YP_924663.1 CDS Noca_3476 NC_008699.1 3686518 3687138 R PFAM: peptidase S14, ClpP; KEGG: pac:PPA1572 ATP-dependent Clp protease proteolytic subunit 2; ClpP2 peptidase complement(3686518..3687138) Nocardioides sp. JS614 4595573 YP_924664.1 CDS Noca_3477 NC_008699.1 3687144 3687731 R PFAM: peptidase S14, ClpP; KEGG: fra:Francci3_1205 endopeptidase Clp; ClpP1 peptidase complement(3687144..3687731) Nocardioides sp. JS614 4595574 YP_924665.1 CDS Noca_3478 NC_008699.1 3687845 3688327 R PFAM: cyclase/dehydrase; KEGG: mmc:Mmcs_4470 hypothetical protein; cyclase/dehydrase complement(3687845..3688327) Nocardioides sp. JS614 4595575 YP_924666.1 CDS Noca_3479 NC_008699.1 3688329 3689465 R PFAM: PGAP1 family protein; KEGG: rha:RHA1_ro05901 hypothetical protein; PGAP1 family protein complement(3688329..3689465) Nocardioides sp. JS614 4595576 YP_924667.1 CDS Noca_3480 NC_008699.1 3689517 3690932 R TIGRFAM: trigger factor; PFAM: peptidylprolyl isomerase, FKBP-type; trigger factor, C-terminal domain protein; trigger factor, N-terminal domain; KEGG: pac:PPA1575 trigger factor (chaperone in protein export); trigger factor complement(3689517..3690932) Nocardioides sp. JS614 4595577 YP_924668.1 CDS Noca_3481 NC_008699.1 3691274 3692377 R PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sco:SCO2624 integral membrane protein; stage II sporulation E family protein complement(3691274..3692377) Nocardioides sp. JS614 4595580 YP_924669.1 CDS Noca_3482 NC_008699.1 3692409 3693257 R PFAM: Formamidopyrimidine-DNA glycolase; KEGG: sma:SAV5427 putative DNA repair hydrolase; formamidopyrimidine-DNA glycosylase complement(3692409..3693257) Nocardioides sp. JS614 4595581 YP_924670.1 CDS Noca_3483 NC_008699.1 3693250 3693738 R catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity; ribose-5-phosphate isomerase B complement(3693250..3693738) Nocardioides sp. JS614 4595582 YP_924671.1 CDS Noca_3484 NC_008699.1 3693752 3694621 R PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: mmc:Mmcs_0314 alpha/beta hydrolase fold-3; alpha/beta hydrolase domain-containing protein complement(3693752..3694621) Nocardioides sp. JS614 4595583 YP_924672.1 CDS Noca_3485 NC_008699.1 3694756 3695898 D KEGG: tfu:Tfu_2606 alanine racemase region; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase 3694756..3695898 Nocardioides sp. JS614 4595584 YP_924673.1 CDS Noca_3486 NC_008699.1 3695895 3696830 D KEGG: mmc:Mmcs_1929 D-alanine--D-alanine ligase; TIGRFAM: D-alanine--D-alanine ligase; PFAM: ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; protein of unknown function DUF201; D-alanine--D-alanine ligase domain protein; D-alanine--D-alanine ligase 3695895..3696830 Nocardioides sp. JS614 4595585 YP_924674.1 CDS Noca_3487 NC_008699.1 3696842 3698122 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: lxx:Lxx14550 two-component system, sensor protein; histidine kinase, dimerisation and phosphoacceptor region 3696842..3698122 Nocardioides sp. JS614 4595586 YP_924675.1 CDS Noca_3488 NC_008699.1 3698119 3698808 D PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: lxx:Lxx14540 two-component system, regulatory protein; response regulator receiver 3698119..3698808 Nocardioides sp. JS614 4595587 YP_924676.1 CDS Noca_3489 NC_008699.1 3698819 3699358 R KEGG: sco:SCO3059 phosphoribosylaminoimidazole carboxylase catalytic subunit PurE; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit complement(3698819..3699358) Nocardioides sp. JS614 4595588 YP_924677.1 CDS Noca_3490 NC_008699.1 3699351 3700550 R With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit complement(3699351..3700550) Nocardioides sp. JS614 4595589 YP_924678.1 CDS Noca_3491 NC_008699.1 3700574 3701002 R PFAM: transcriptional regulator domain protein; KEGG: tfu:Tfu_2549 response regulator receiver; transcriptional regulator domain-containing protein complement(3700574..3701002) Nocardioides sp. JS614 4595590 YP_924679.1 CDS Noca_3492 NC_008699.1 3701117 3702124 R PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: sma:SAV3329 putative adenylate cyclase; adenylate cyclase complement(3701117..3702124) Nocardioides sp. JS614 4595591 YP_924680.1 CDS Noca_3493 NC_008699.1 3702111 3702611 R PFAM: membrane-flanked domain; KEGG: mpa:MAP3396c hypothetical protein; membrane-flanked domain-containing protein complement(3702111..3702611) Nocardioides sp. JS614 4595592 YP_924681.1 CDS Noca_3494 NC_008699.1 3702624 3703415 R TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; KEGG: sco:SCO4927 biotin apo-protein ligase; biotin--acetyl-CoA-carboxylase ligase complement(3702624..3703415) Nocardioides sp. JS614 4595593 YP_924682.1 CDS Noca_3495 NC_008699.1 3703487 3705109 D PFAM: carboxyl transferase; KEGG: sco:SCO4926 propionyl-CoA carboxylase complex B subunit; carboxyl transferase 3703487..3705109 Nocardioides sp. JS614 4595594 YP_924683.1 CDS Noca_3496 NC_008699.1 3705265 3705519 D KEGG: fal:FRAAL1211 hypothetical protein; hypothetical protein 3705265..3705519 Nocardioides sp. JS614 4595595 YP_924684.1 CDS Noca_3497 NC_008699.1 3705691 3707181 D PFAM: glycosyl transferase, family 2; KEGG: bcl:ABC2648 hypothetical protein; glycosyl transferase family protein 3705691..3707181 Nocardioides sp. JS614 4595596 YP_924685.1 CDS Noca_3498 NC_008699.1 3707212 3707934 D hypothetical protein 3707212..3707934 Nocardioides sp. JS614 4595597 YP_924686.1 CDS Noca_3499 NC_008699.1 3708068 3708421 D PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: mmc:Mmcs_2855 protein of unknown function DUF222; HNH endonuclease 3708068..3708421 Nocardioides sp. JS614 4595598 YP_924687.1 CDS Noca_3500 NC_008699.1 3708480 3709550 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cjk:jk1635 response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; response regulator receiver complement(3708480..3709550) Nocardioides sp. JS614 4595599 YP_924688.1 CDS Noca_3501 NC_008699.1 3709635 3710675 R PFAM: glycoside hydrolase, family 6; KEGG: mtc:MT0067 cellulase; cellulase complement(3709635..3710675) Nocardioides sp. JS614 4595600 YP_924689.1 CDS Noca_3502 NC_008699.1 3710699 3712123 R TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro06636 multidrug resistance transporter, MFS superfamily; EmrB/QacA family drug resistance transporter complement(3710699..3712123) Nocardioides sp. JS614 4595601 YP_924690.1 CDS Noca_3503 NC_008699.1 3712190 3712792 D PFAM: regulatory protein, TetR; KEGG: rha:RHA1_ro06635 transcriptional regulator, TetR family; TetR family transcriptional regulator 3712190..3712792 Nocardioides sp. JS614 4595602 YP_924691.1 CDS Noca_3504 NC_008699.1 3712789 3713400 D TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: sco:SCO4923 putative septum formation protein; maf protein 3712789..3713400 Nocardioides sp. JS614 4595603 YP_924692.1 CDS Noca_3505 NC_008699.1 3713345 3713923 R PFAM: GtrA family protein; KEGG: lxx:Lxx04815 conserved putative integral membrane protein; GtrA family protein complement(3713345..3713923) Nocardioides sp. JS614 4595604 YP_924693.1 CDS Noca_3506 NC_008699.1 3713970 3715169 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: mpa:MAP2312c FadE19; butyryl-CoA dehydrogenase complement(3713970..3715169) Nocardioides sp. JS614 4595605 YP_924694.1 CDS Noca_3507 NC_008699.1 3715397 3715678 R PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: fra:Francci3_2007 FAD linked oxidase-like; hypothetical protein complement(3715397..3715678) Nocardioides sp. JS614 4595606 YP_924695.1 CDS Noca_3508 NC_008699.1 3715715 3716317 R PFAM: regulatory protein, TetR; KEGG: cvi:CV4310 probable transcription regulator, TetR family; regulatory protein TetR complement(3715715..3716317) Nocardioides sp. JS614 4595607 YP_924696.1 CDS Noca_3509 NC_008699.1 3716357 3717580 D KEGG: rha:RHA1_ro03056 hypothetical protein; hypothetical protein 3716357..3717580 Nocardioides sp. JS614 4595608 YP_924697.1 CDS Noca_3510 NC_008699.1 3717691 3719463 D PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: tfu:Tfu_2557 putative acyl-CoA carboxylase, alpha subunit; carbamoyl-phosphate synthase subunit L 3717691..3719463 Nocardioides sp. JS614 4595609 YP_924698.1 CDS Noca_3511 NC_008699.1 3719487 3719984 D PFAM: membrane-flanked domain; KEGG: rha:RHA1_ro05943 hypothetical protein; membrane-flanked domain-containing protein 3719487..3719984 Nocardioides sp. JS614 4595693 YP_924699.1 CDS Noca_3512 NC_008699.1 3719981 3721456 D PFAM: membrane-flanked domain; KEGG: rha:RHA1_ro05942 hypothetical protein; membrane-flanked domain-containing protein 3719981..3721456 Nocardioides sp. JS614 4595694 YP_924700.1 CDS Noca_3513 NC_008699.1 3721525 3724911 D biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase 3721525..3724911 Nocardioides sp. JS614 4595695 YP_924701.1 CDS Noca_3514 NC_008699.1 3724989 3726074 D TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: rha:RHA1_ro01572 benzoate membrane transport protein BenE; benzoate transporter 3724989..3726074 Nocardioides sp. JS614 4595696 YP_924702.1 CDS Noca_3515 NC_008699.1 3726055 3727308 R TIGRFAM: SpoIID/LytB domain; PFAM: Stage II sporulation D domain protein; KEGG: rha:RHA1_ro04051 probable stage II sporulation protein; SpoIID/LytB domain-containing protein complement(3726055..3727308) Nocardioides sp. JS614 4595697 YP_924703.1 CDS Noca_3516 NC_008699.1 3727351 3728505 R TIGRFAM: SpoIID/LytB domain; PFAM: Stage II sporulation D domain protein; KEGG: rha:RHA1_ro04051 probable stage II sporulation protein; SpoIID/LytB domain-containing protein complement(3727351..3728505) Nocardioides sp. JS614 4595698 YP_924704.1 CDS Noca_3517 NC_008699.1 3728542 3729939 R catalyzes the reduction of nonspecific electron acceptors such as 2,6-dimethyl-1,4-benzoquinone and 5-hydroxy-1,4-naphthaquinone; does not have lipoamide dehydrogenase activity; flavoprotein disulfide reductase complement(3728542..3729939) Nocardioides sp. JS614 4595699 YP_924705.1 CDS Noca_3518 NC_008699.1 3729951 3731345 R E3 component of alpha keto acid dehydrogenase complexes LpdC; forms a homodimer; binds one molecule of FAD monomer; catalyzes NAD+-dependent oxidation of dihydrolipoyl cofactors that are covalently linked to the E2 component; dihydrolipoamide dehydrogenase complement(3729951..3731345) Nocardioides sp. JS614 4595700 YP_924706.1 CDS Noca_3519 NC_008699.1 3731451 3731858 D KEGG: sco:SCO4918 hypothetical protein; hypothetical protein 3731451..3731858 Nocardioides sp. JS614 4595701 YP_924707.1 CDS Noca_3520 NC_008699.1 3731972 3732916 R KEGG: rha:RHA1_ro05202 hypothetical protein; hypothetical protein complement(3731972..3732916) Nocardioides sp. JS614 4595702 YP_924708.1 CDS Noca_3521 NC_008699.1 3733125 3733946 D catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase 3733125..3733946 Nocardioides sp. JS614 4595703 YP_924709.1 CDS Noca_3522 NC_008699.1 3733955 3734623 D PFAM: regulatory protein, TetR; KEGG: reu:Reut_B3897 regulatory protein, TetR; TetR family transcriptional regulator 3733955..3734623 Nocardioides sp. JS614 4595704 YP_924710.1 CDS Noca_3523 NC_008699.1 3734613 3735446 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: tfu:Tfu_1140 hypothetical protein; NAD-dependent epimerase/dehydratase 3734613..3735446 Nocardioides sp. JS614 4595705 YP_924711.1 CDS Noca_3524 NC_008699.1 3735477 3736481 D PFAM: aldo/keto reductase; KEGG: ade:Adeh_3036 aldo/keto reductase; aldo/keto reductase 3735477..3736481 Nocardioides sp. JS614 4595706 YP_924712.1 CDS Noca_3525 NC_008699.1 3736478 3736924 R KEGG: sco:SCO1535 hypothetical protein; hypothetical protein complement(3736478..3736924) Nocardioides sp. JS614 4595707 YP_924713.1 CDS Noca_3526 NC_008699.1 3736942 3738594 D PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: sma:SAV3343 putative phosphomannomutase; phosphoglucomutase/phosphomannomutase alpha/beta/subunit 3736942..3738594 Nocardioides sp. JS614 4595708 YP_924714.1 CDS Noca_3527 NC_008699.1 3738591 3739193 R hypothetical protein complement(3738591..3739193) Nocardioides sp. JS614 4595709 YP_924715.1 CDS Noca_3528 NC_008699.1 3739220 3740194 D KEGG: sco:SCO4914 putative deoxyribose-phosphate aldolase; TIGRFAM: deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; deoxyribose-phosphate aldolase 3739220..3740194 Nocardioides sp. JS614 4595710 YP_924716.1 CDS Noca_3529 NC_008699.1 3740200 3741654 D PFAM: aldehyde dehydrogenase; KEGG: sco:SCO4913 putative aldehyde dehydrogenase; aldehyde dehydrogenase (acceptor) 3740200..3741654 Nocardioides sp. JS614 4595711 YP_924717.1 CDS Noca_3530 NC_008699.1 3741719 3742588 D PFAM: aldehyde dehydrogenase; KEGG: sma:SAV3348 aldehyde dehydrogenase; aldehyde dehydrogenase 3741719..3742588 Nocardioides sp. JS614 4595712 YP_924718.1 CDS Noca_3531 NC_008699.1 3742596 3743207 D KEGG: sma:SAV3350 ATP-binding protein; uridine kinase 3742596..3743207 Nocardioides sp. JS614 4595713 YP_924719.1 CDS Noca_3532 NC_008699.1 3743204 3743752 D hypothetical protein 3743204..3743752 Nocardioides sp. JS614 4595714 YP_924720.1 CDS Noca_3533 NC_008699.1 3743754 3744875 R catalyzes the formation of inosine from adenosine; adenosine deaminase complement(3743754..3744875) Nocardioides sp. JS614 4595715 YP_924721.1 CDS Noca_3534 NC_008699.1 3744941 3745393 D PFAM: MaoC domain protein dehydratase; KEGG: sco:SCO1698 hypothetical protein; dehydratase 3744941..3745393 Nocardioides sp. JS614 4595716 YP_924722.1 CDS deoA NC_008699.1 3745401 3746687 R Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate; thymidine phosphorylase complement(3745401..3746687) Nocardioides sp. JS614 4595717 YP_924723.1 CDS Noca_3536 NC_008699.1 3746680 3747855 R PFAM: cytochrome P450; KEGG: sco:SCO3636 putative cytochrome P-450 hydroxylase; cytochrome P450 complement(3746680..3747855) Nocardioides sp. JS614 4595718 YP_924724.1 CDS Noca_3537 NC_008699.1 3747827 3748228 R TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: lxx:Lxx04640 cytidine deaminase; cytidine deaminase complement(3747827..3748228) Nocardioides sp. JS614 4595719 YP_924725.1 CDS Noca_3538 NC_008699.1 3748228 3749526 R PFAM: inner-membrane translocator; KEGG: sma:SAV3367 putative sugar ABC transporter integral membrane protein; inner-membrane translocator complement(3748228..3749526) Nocardioides sp. JS614 4595720 YP_924726.1 CDS Noca_3539 NC_008699.1 3749573 3750688 R PFAM: inner-membrane translocator; KEGG: sco:SCO4887 putative sugar ABC transporter integral membrane protein; inner-membrane translocator complement(3749573..3750688) Nocardioides sp. JS614 4595721 YP_924727.1 CDS Noca_3540 NC_008699.1 3750685 3752205 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO4886 putative sugar ABC transporter ATP-binding protein; ABC transporter-like protein complement(3750685..3752205) Nocardioides sp. JS614 4595722 YP_924728.1 CDS Noca_3541 NC_008699.1 3752333 3753397 R PFAM: basic membrane lipoprotein; KEGG: sco:SCO4885 putative lipoprotein; basic membrane lipoprotein complement(3752333..3753397) Nocardioides sp. JS614 4595723 YP_924729.1 CDS Noca_3542 NC_008699.1 3753530 3754750 R KEGG: fra:Francci3_0694 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase complement(3753530..3754750) Nocardioides sp. JS614 4595724 YP_924730.1 CDS Noca_3543 NC_008699.1 3754806 3755792 R TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; KEGG: sma:SAV2041 putative lysine arginine ornithine transport system kinase; LAO/AO transport system ATPase complement(3754806..3755792) Nocardioides sp. JS614 4595725 YP_924731.1 CDS Noca_3544 NC_008699.1 3755792 3757954 R MDM; functions in conversion of succinate to propionate; methylmalonyl-CoA mutase complement(3755792..3757954) Nocardioides sp. JS614 4595726 YP_924732.1 CDS Noca_3545 NC_008699.1 3757951 3759660 R PFAM: methylmalonyl-CoA mutase; KEGG: fal:FRAAL4951 methylmalonyl-CoA mutase small subunit (MCM-beta); methylmalonyl-CoA mutase complement(3757951..3759660) Nocardioides sp. JS614 4595727 YP_924733.1 CDS Noca_3546 NC_008699.1 3759730 3760473 R hypothetical protein complement(3759730..3760473) Nocardioides sp. JS614 4595728 YP_924734.1 CDS Noca_3547 NC_008699.1 3760547 3761323 R catalyzes the fumarate and succinate interconversion; fumarate reductase is used under anaerobic conditions with glucose or glycerol as carbon source; fumarate reductase iron-sulfur subunit complement(3760547..3761323) Nocardioides sp. JS614 4595729 YP_924735.1 CDS sdhA NC_008699.1 3761334 3763199 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit complement(3761334..3763199) Nocardioides sp. JS614 4595730 YP_924736.1 CDS Noca_3549 NC_008699.1 3763276 3764109 R KEGG: sco:SCO5108 integral membrane protein; integral membrane protein complement(3763276..3764109) Nocardioides sp. JS614 4599428 YP_924737.1 CDS Noca_3550 NC_008699.1 3764176 3765345 D PFAM: glycosyl transferase, group 1; KEGG: mmc:Mmcs_0761 glycosyl transferase, group 1; group 1 glycosyl transferase 3764176..3765345 Nocardioides sp. JS614 4599429 YP_924738.1 CDS Noca_3551 NC_008699.1 3765409 3766110 D TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family; KEGG: tfu:Tfu_2453 succinate dehydrogenase, cytochrome b558 subunit; succinate dehydrogenase subunit C 3765409..3766110 Nocardioides sp. JS614 4599430 YP_924739.1 CDS sdhA NC_008699.1 3766131 3768149 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 3766131..3768149 Nocardioides sp. JS614 4599431 YP_924740.1 CDS Noca_3553 NC_008699.1 3768149 3768892 D TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: tfu:Tfu_2451 putative succinate dehydrogenase iron-sulfur protein; succinate dehydrogenase/fumarate reductase iron-sulfur subunit 3768149..3768892 Nocardioides sp. JS614 4599432 YP_924741.1 CDS Noca_3554 NC_008699.1 3768901 3769923 R KEGG: ter:Tery_3075 TPR repeat; hypothetical protein complement(3768901..3769923) Nocardioides sp. JS614 4599433 YP_924742.1 CDS Noca_3555 NC_008699.1 3769920 3771770 R KEGG: gsu:GSU0970 hypothetical protein; hypothetical protein complement(3769920..3771770) Nocardioides sp. JS614 4599434 YP_924743.1 CDS Noca_3556 NC_008699.1 3771803 3772342 R PFAM: 2',5' RNA ligase; KEGG: fal:FRAAL1171 putative secreted protein; putative phosphodiesterase domain; 2',5' RNA ligase complement(3771803..3772342) Nocardioides sp. JS614 4599435 YP_924744.1 CDS Noca_3557 NC_008699.1 3772353 3773411 R TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase, class Ib; KEGG: nfa:nfa9360 putative tryptophanyl-tRNA synthetase; tryptophanyl-tRNA synthetase complement(3772353..3773411) Nocardioides sp. JS614 4599436 YP_924745.1 CDS Noca_3558 NC_008699.1 3773486 3774958 R PFAM: glycoside hydrolase, family 5; KEGG: pac:PPA2106 endoglycoceramidase; endoglycoceramidase complement(3773486..3774958) Nocardioides sp. JS614 4599437 YP_924746.1 CDS Noca_3559 NC_008699.1 3775031 3775687 D PFAM: GCN5-related N-acetyltransferase; KEGG: fal:FRAAL1305 putative acetyltransferase; N-acetyltransferase GCN5 3775031..3775687 Nocardioides sp. JS614 4599438 YP_924747.1 CDS Noca_3560 NC_008699.1 3775561 3776796 R PFAM: major facilitator superfamily MFS_1; KEGG: nfa:nfa9260 putative transporter; major facilitator transporter complement(3775561..3776796) Nocardioides sp. JS614 4599439 YP_924748.1 CDS Noca_3561 NC_008699.1 3776860 3777690 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rha:RHA1_ro02614 short chain dehydrogenase; short chain dehydrogenase complement(3776860..3777690) Nocardioides sp. JS614 4599440 YP_924749.1 CDS Noca_3562 NC_008699.1 3777687 3779042 R PFAM: cytochrome P450; KEGG: rha:RHA1_ro05210 cytochrome P450 CYP136; cytochrome P450 complement(3777687..3779042) Nocardioides sp. JS614 4599441 YP_924750.1 CDS Noca_3563 NC_008699.1 3779119 3779730 D KEGG: rha:RHA1_ro05211 possible transcriptional regulator, TetR family; TetR family transcriptional regulator 3779119..3779730 Nocardioides sp. JS614 4599442 YP_924751.1 CDS Noca_3564 NC_008699.1 3780735 3781046 D PFAM: transposase IS3/IS911 family protein; KEGG: cef:CE2618 putative transposase; transposase IS3/IS911 family protein 3780735..3781046 Nocardioides sp. JS614 4599443 YP_924752.1 CDS Noca_3565 NC_008699.1 3781262 3782014 D PFAM: Integrase, catalytic region; KEGG: cef:CE2619 putative transposase; integrase catalytic subunit 3781262..3782014 Nocardioides sp. JS614 4599444 YP_924753.1 CDS Noca_3566 NC_008699.1 3781989 3782807 R KEGG: sus:Acid_5880 TIR protein; hypothetical protein complement(3781989..3782807) Nocardioides sp. JS614 4599445 YP_924754.1 CDS Noca_3567 NC_008699.1 3783296 3784030 R hypothetical protein complement(3783296..3784030) Nocardioides sp. JS614 4599446 YP_924755.1 CDS Noca_3568 NC_008699.1 3784225 3784893 R hypothetical protein complement(3784225..3784893) Nocardioides sp. JS614 4599447 YP_924756.1 CDS Noca_3569 NC_008699.1 3785638 3786171 R hypothetical protein complement(3785638..3786171) Nocardioides sp. JS614 4599448 YP_924757.1 CDS Noca_3570 NC_008699.1 3787513 3788631 R PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: sco:SCO3537 DNA-binding protein; hypothetical protein complement(3787513..3788631) Nocardioides sp. JS614 4599449 YP_924758.1 CDS Noca_3571 NC_008699.1 3788628 3789377 R hypothetical protein complement(3788628..3789377) Nocardioides sp. JS614 4599450 YP_924759.1 CDS Noca_3572 NC_008699.1 3789653 3790357 D hypothetical protein 3789653..3790357 Nocardioides sp. JS614 4599451 YP_924760.1 CDS Noca_3573 NC_008699.1 3790417 3792108 D KEGG: mpa:MAP0443c hypothetical protein; hypothetical protein 3790417..3792108 Nocardioides sp. JS614 4599452 YP_924761.1 CDS Noca_3574 NC_008699.1 3792140 3792676 R hypothetical protein complement(3792140..3792676) Nocardioides sp. JS614 4599453 YP_924762.1 CDS Noca_3575 NC_008699.1 3792669 3794882 R KEGG: sma:SAV7214 putative isocitrate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type; isocitrate dehydrogenase complement(3792669..3794882) Nocardioides sp. JS614 4599454 YP_924763.1 CDS Noca_3576 NC_008699.1 3795060 3796055 D TIGRFAM: MIP family channel proteins; PFAM: major intrinsic protein; KEGG: bcn:Bcen_2859 MIP family channel proteins; MIP family channel protein 3795060..3796055 Nocardioides sp. JS614 4599455 YP_924764.1 CDS Noca_3577 NC_008699.1 3796036 3796713 R hypothetical protein complement(3796036..3796713) Nocardioides sp. JS614 4599456 YP_924765.1 CDS Noca_3578 NC_008699.1 3796792 3797778 D catalyzes the oxidation of malate to oxaloacetate; malate dehydrogenase 3796792..3797778 Nocardioides sp. JS614 4599457 YP_924766.1 CDS Noca_3579 NC_008699.1 3797797 3798486 R KEGG: nfa:nfa19270 hypothetical protein; hypothetical protein complement(3797797..3798486) Nocardioides sp. JS614 4599458 YP_924767.1 CDS Noca_3580 NC_008699.1 3798487 3798837 R KEGG: nfa:nfa19270 hypothetical protein; hypothetical protein complement(3798487..3798837) Nocardioides sp. JS614 4599459 YP_924768.1 CDS Noca_3581 NC_008699.1 3798869 3799201 R KEGG: tfu:Tfu_2569 putative integral membrane protein; putative integral membrane protein complement(3798869..3799201) Nocardioides sp. JS614 4599460 YP_924769.1 CDS Noca_3582 NC_008699.1 3799198 3800049 R PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: tfu:Tfu_2571 methenyltetrahydrofolate cyclohydrolase; methenyltetrahydrofolate cyclohydrolase complement(3799198..3800049) Nocardioides sp. JS614 4599461 YP_924770.1 CDS purH NC_008699.1 3800072 3801649 R involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(3800072..3801649) Nocardioides sp. JS614 4599462 YP_924771.1 CDS purN NC_008699.1 3801758 3802384 R glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase complement(3801758..3802384) Nocardioides sp. JS614 4599463 YP_924772.1 CDS Noca_3585 NC_008699.1 3802381 3803649 R KEGG: tfu:Tfu_2575 hypothetical protein; hypothetical protein complement(3802381..3803649) Nocardioides sp. JS614 4599464 YP_924773.1 CDS Noca_3586 NC_008699.1 3803742 3805571 D KEGG: sma:SAV3318 putative RNA polymerase ECF-subfamily sigma factor; hypothetical protein 3803742..3805571 Nocardioides sp. JS614 4599465 YP_924774.1 CDS Noca_3587 NC_008699.1 3805966 3806478 D PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sco:SCO3709 putative ECF sigma factor; sigma-70 factor 3805966..3806478 Nocardioides sp. JS614 4599466 YP_924775.1 CDS Noca_3588 NC_008699.1 3806471 3807427 D hypothetical protein 3806471..3807427 Nocardioides sp. JS614 4599467 YP_924776.1 CDS Noca_3589 NC_008699.1 3807536 3808429 R Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha complement(3807536..3808429) Nocardioides sp. JS614 4599468 YP_924777.1 CDS sucC NC_008699.1 3808449 3809609 R catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta complement(3808449..3809609) Nocardioides sp. JS614 4599393 YP_924778.1 CDS Noca_3591 NC_008699.1 3809768 3810199 R PFAM: cobalamin B12-binding domain protein; KEGG: sco:SCO4800 isobutiryl CoA mutase, small subunit; cobalamin B12-binding domain-containing protein complement(3809768..3810199) Nocardioides sp. JS614 4599394 YP_924779.1 CDS Noca_3592 NC_008699.1 3810397 3811362 D PFAM: peptidase M23B; KEGG: sma:SAV4118 peptidase; peptidase M23B 3810397..3811362 Nocardioides sp. JS614 4599395 YP_924780.1 CDS Noca_3593 NC_008699.1 3811375 3813768 R TIGRFAM: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase; KEGG: sco:SCO4797 putative ATP-dependent DNA helicase II; ATP-dependent DNA helicase PcrA complement(3811375..3813768) Nocardioides sp. JS614 4599396 YP_924781.1 CDS Noca_3594 NC_008699.1 3813831 3814307 R hypothetical protein complement(3813831..3814307) Nocardioides sp. JS614 4599397 YP_924782.1 CDS Noca_3595 NC_008699.1 3814319 3814681 R PFAM: response regulator receiver; KEGG: gme:Gmet_3119 response regulator receiver domain protein (CheY-like); response regulator receiver complement(3814319..3814681) Nocardioides sp. JS614 4599398 YP_924783.1 CDS Noca_3596 NC_008699.1 3814715 3815167 R KEGG: aba:Acid345_1530 hypothetical protein; hypothetical protein complement(3814715..3815167) Nocardioides sp. JS614 4599399 YP_924784.1 CDS Noca_3597 NC_008699.1 3815164 3815559 R PFAM: response regulator receiver; KEGG: aba:Acid345_1527 response regulator receiver protein, CheY; response regulator receiver complement(3815164..3815559) Nocardioides sp. JS614 4599400 YP_924785.1 CDS Noca_3598 NC_008699.1 3815547 3816383 R PFAM: MCP methyltransferase, CheR-type; Methyltransferase type 12; KEGG: aba:Acid345_1529 MCP methyltransferase, CheR-type; chemotaxis protein CheR complement(3815547..3816383) Nocardioides sp. JS614 4599401 YP_924786.1 CDS Noca_3599 NC_008699.1 3816380 3817480 R PFAM: CheB methylesterase; response regulator receiver; KEGG: aba:Acid345_1528 response regulator receiver modulated CheB methylesterase; response regulator receiver modulated CheB methylesterase complement(3816380..3817480) Nocardioides sp. JS614 4599402 YP_924787.1 CDS Noca_3600 NC_008699.1 3817577 3818482 R hypothetical protein complement(3817577..3818482) Nocardioides sp. JS614 4599403 YP_924788.1 CDS Noca_3601 NC_008699.1 3818526 3818801 R KEGG: aba:Acid345_1672 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(3818526..3818801) Nocardioides sp. JS614 4599404 YP_924789.1 CDS Noca_3602 NC_008699.1 3818828 3820384 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: aba:Acid345_1672 methyl-accepting chemotaxis sensory transducer; chemotaxis sensory transducer complement(3818828..3820384) Nocardioides sp. JS614 4599405 YP_924790.1 CDS Noca_3603 NC_008699.1 3820433 3820852 R PFAM: CheW domain protein; KEGG: aba:Acid345_1525 CheW protein; CheW protein complement(3820433..3820852) Nocardioides sp. JS614 4599406 YP_924791.1 CDS Noca_3604 NC_008699.1 3820849 3823077 R PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: aba:Acid345_1524 CheA signal transduction histidine kinases; ATPase domain-containing protein complement(3820849..3823077) Nocardioides sp. JS614 4599407 YP_924792.1 CDS Noca_3605 NC_008699.1 3823175 3823531 R KEGG: sma:SAV3466 integral membrane protein; integral membrane protein complement(3823175..3823531) Nocardioides sp. JS614 4599408 YP_924793.1 CDS Noca_3606 NC_008699.1 3823558 3824247 R PFAM: regulatory protein, LuxR; response regulator receiver; Bacterio-opsin activator, HTH domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sma:SAV3470 two-component system response regulator; regulatory protein LuxR complement(3823558..3824247) Nocardioides sp. JS614 4599409 YP_924794.1 CDS Noca_3607 NC_008699.1 3824240 3825562 R PFAM: ATP-binding region, ATPase domain protein domain protein; PspC domain protein; KEGG: sma:SAV3471 two-component system sensor kinase; ATPase domain-containing protein complement(3824240..3825562) Nocardioides sp. JS614 4599410 YP_924795.1 CDS Noca_3608 NC_008699.1 3825670 3826929 D PFAM: PspC domain protein; KEGG: sma:SAV3472 hypothetical protein; PspC domain-containing protein 3825670..3826929 Nocardioides sp. JS614 4599411 YP_924796.1 CDS Noca_3609 NC_008699.1 3826926 3827234 D hypothetical protein 3826926..3827234 Nocardioides sp. JS614 4599412 YP_924797.1 CDS Noca_3610 NC_008699.1 3827256 3827798 D PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: tfu:Tfu_0591 hypothetical protein; YbaK/prolyl-tRNA synthetase associated domain-containing protein 3827256..3827798 Nocardioides sp. JS614 4599413 YP_924798.1 CDS Noca_3611 NC_008699.1 3827809 3828318 D KEGG: mmc:Mmcs_2518 hypothetical protein; hypothetical protein 3827809..3828318 Nocardioides sp. JS614 4599414 YP_924799.1 CDS Noca_3612 NC_008699.1 3828352 3829380 D PFAM: luciferase family protein; KEGG: tfu:Tfu_0980 putative oxidoreductase; luciferase family protein 3828352..3829380 Nocardioides sp. JS614 4599415 YP_924800.1 CDS Noca_3613 NC_008699.1 3829380 3830528 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: sco:SCO6787 probable acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 3829380..3830528 Nocardioides sp. JS614 4599416 YP_924801.1 CDS Noca_3614 NC_008699.1 3830561 3830836 R hypothetical protein complement(3830561..3830836) Nocardioides sp. JS614 4599417 YP_924802.1 CDS Noca_3615 NC_008699.1 3830913 3831860 D PFAM: NAD-dependent epimerase/dehydratase; KEGG: ava:Ava_3981 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 3830913..3831860 Nocardioides sp. JS614 4599418 YP_924803.1 CDS Noca_3616 NC_008699.1 3831968 3832363 R PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: mmc:Mmcs_2855 protein of unknown function DUF222; HNH endonuclease complement(3831968..3832363) Nocardioides sp. JS614 4599419 YP_924804.1 CDS Noca_3617 NC_008699.1 3832817 3834643 D PFAM: AMP-dependent synthetase and ligase; KEGG: sco:SCO6790 putative long chain fatty acid coA ligase; AMP-dependent synthetase and ligase 3832817..3834643 Nocardioides sp. JS614 4599420 YP_924805.1 CDS Noca_3618 NC_008699.1 3834830 3836968 D PFAM: MMPL domain protein; KEGG: sma:SAV6879 putative membrane protein; MMPL domain-containing protein 3834830..3836968 Nocardioides sp. JS614 4599421 YP_924806.1 CDS fbiC NC_008699.1 3837036 3839561 D 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase; catalyzes radical-mediated transfer of hydroxybenzyl group from 4-hydroxyphenylpyruvate (HPP) to 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione to form 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO); functions in F420 biosynthesis; FO synthase 3837036..3839561 Nocardioides sp. JS614 4599422 YP_924807.1 CDS Noca_3620 NC_008699.1 3839565 3841961 R PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: cya:CYA_1981 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase family protein; putative phosphoketolase complement(3839565..3841961) Nocardioides sp. JS614 4599423 YP_924808.1 CDS Noca_3621 NC_008699.1 3842054 3842494 D KEGG: rha:RHA1_ro02139 hypothetical protein; hypothetical protein 3842054..3842494 Nocardioides sp. JS614 4599424 YP_924809.1 CDS Noca_3622 NC_008699.1 3842546 3842689 D hypothetical protein 3842546..3842689 Nocardioides sp. JS614 4599425 YP_924810.1 CDS Noca_3623 NC_008699.1 3842783 3843433 R TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: mmc:Mmcs_2993 phage SPO1 DNA polymerase-related protein; phage SPO1 DNA polymerase-like protein complement(3842783..3843433) Nocardioides sp. JS614 4599426 YP_924811.1 CDS Noca_3624 NC_008699.1 3843464 3844081 D KEGG: nfa:nfa43450 hypothetical protein; hypothetical protein 3843464..3844081 Nocardioides sp. JS614 4599427 YP_924812.1 CDS Noca_3625 NC_008699.1 3844184 3844792 D KEGG: mmc:Mmcs_3326 luciferase-like protein; luciferase-like protein 3844184..3844792 Nocardioides sp. JS614 4597448 YP_924813.1 CDS Noca_3626 NC_008699.1 3844875 3845099 D hypothetical protein 3844875..3845099 Nocardioides sp. JS614 4597449 YP_924814.1 CDS Noca_3627 NC_008699.1 3845101 3846060 D KEGG: sco:SCO6495 dehydrogenase; dehydrogenase 3845101..3846060 Nocardioides sp. JS614 4597450 YP_924815.1 CDS Noca_3628 NC_008699.1 3846015 3846470 R KEGG: mmc:Mmcs_3027 hypothetical protein; hypothetical protein complement(3846015..3846470) Nocardioides sp. JS614 4597451 YP_924816.1 CDS Noca_3629 NC_008699.1 3846719 3848005 D KEGG: bcl:ABC0432 O-acetylhomoserine (thiol)-lyase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; O-acetylhomoserine/O-acetylserine sulfhydrylase 3846719..3848005 Nocardioides sp. JS614 4597452 YP_924817.1 CDS Noca_3630 NC_008699.1 3848010 3849119 D KEGG: nha:Nham_0676 homoserine O-acetyltransferase; TIGRFAM: homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold; homoserine O-acetyltransferase 3848010..3849119 Nocardioides sp. JS614 4597453 YP_924818.1 CDS guaA NC_008699.1 3849134 3850717 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(3849134..3850717) Nocardioides sp. JS614 4597454 YP_924819.1 CDS Noca_3632 NC_008699.1 3851093 3852805 R PFAM: glucose-methanol-choline oxidoreductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD dependent oxidoreductase; KEGG: nfa:nfa43500 putative cholesterol oxidase; glucose-methanol-choline oxidoreductase complement(3851093..3852805) Nocardioides sp. JS614 4597455 YP_924820.1 CDS gabD2 NC_008699.1 3852802 3854424 R NADP-dependent semialdehyde dehydrogenase; part of alternative pathway from alpha-ketoglutarate to succinate; succinate-semialdehyde dehydrogenase complement(3852802..3854424) Nocardioides sp. JS614 4597456 YP_924821.1 CDS Noca_3634 NC_008699.1 3854528 3855970 R PFAM: aldehyde dehydrogenase; KEGG: mpa:MAP2338 hypothetical protein; aldehyde dehydrogenase complement(3854528..3855970) Nocardioides sp. JS614 4597457 YP_924822.1 CDS Noca_3635 NC_008699.1 3855996 3857117 R KEGG: mbo:Mb3194 hypothetical protein; hypothetical protein complement(3855996..3857117) Nocardioides sp. JS614 4597458 YP_924823.1 CDS Noca_3636 NC_008699.1 3857114 3858241 R PFAM: aminoglycoside phosphotransferase; KEGG: mmc:Mmcs_1560 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase complement(3857114..3858241) Nocardioides sp. JS614 4597459 YP_924824.1 CDS Noca_3637 NC_008699.1 3858439 3860193 R PFAM: FAD dependent oxidoreductase; KEGG: tfu:Tfu_2593 glycerol-3-phosphate dehydrogenase; FAD dependent oxidoreductase complement(3858439..3860193) Nocardioides sp. JS614 4597460 YP_924825.1 CDS Noca_3638 NC_008699.1 3860266 3861477 D KEGG: pac:PPA1185 putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation); putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) 3860266..3861477 Nocardioides sp. JS614 4597461 YP_924826.1 CDS Noca_3639 NC_008699.1 3861481 3862269 R PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: sma:SAV3194 hydrolase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(3861481..3862269) Nocardioides sp. JS614 4597462 YP_924827.1 CDS Noca_3640 NC_008699.1 3862277 3863383 R catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5-monophosphate dehydrogenase complement(3862277..3863383) Nocardioides sp. JS614 4597463 YP_924828.1 CDS Noca_3641 NC_008699.1 3863447 3864025 R hypothetical protein complement(3863447..3864025) Nocardioides sp. JS614 4597464 YP_924829.1 CDS Noca_3642 NC_008699.1 3864123 3866015 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: sco:SCO1071 two component system sensor kinase; ATPase domain-containing protein 3864123..3866015 Nocardioides sp. JS614 4597465 YP_924830.1 CDS Noca_3643 NC_008699.1 3866012 3866659 D PFAM: regulatory protein, LuxR; response regulator receiver; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sco:SCO6667 two-component regulator; two component LuxR family transcriptional regulator 3866012..3866659 Nocardioides sp. JS614 4597466 YP_924831.1 CDS Noca_3644 NC_008699.1 3866785 3868881 D KEGG: bcn:Bcen_6533 outer membrane autotransporter barrel; hypothetical protein 3866785..3868881 Nocardioides sp. JS614 4595756 YP_924832.1 CDS Noca_3645 NC_008699.1 3868895 3870397 R KEGG: sma:SAV5000 putative inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase; inosine-5'-monophosphate dehydrogenase complement(3868895..3870397) Nocardioides sp. JS614 4595757 YP_924833.1 CDS Noca_3646 NC_008699.1 3870577 3872202 R TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: sma:SAV4992 putative class I heat-shock protein; chaperonin GroEL complement(3870577..3872202) Nocardioides sp. JS614 4595758 YP_924834.1 CDS groES NC_008699.1 3872299 3872592 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(3872299..3872592) Nocardioides sp. JS614 4595759 YP_924835.1 CDS Noca_3648 NC_008699.1 3872789 3873955 D KEGG: sco:SCO4758 hypothetical protein; hypothetical protein 3872789..3873955 Nocardioides sp. JS614 4595760 YP_924836.1 CDS Noca_3649 NC_008699.1 3874134 3874760 R KEGG: cdi:DIP1163 hypothetical protein; hypothetical protein complement(3874134..3874760) Nocardioides sp. JS614 4595761 YP_924837.1 CDS Noca_3650 NC_008699.1 3874935 3875558 R PFAM: beta-lactamase domain protein; KEGG: sco:SCO0740 hydrolase; beta-lactamase domain-containing protein complement(3874935..3875558) Nocardioides sp. JS614 4595762 YP_924838.1 CDS Noca_3651 NC_008699.1 3875558 3876655 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sco:SCO0741 putative NAD/factor-dependent formaldehyde dehydrogenase; alcohol dehydrogenase complement(3875558..3876655) Nocardioides sp. JS614 4595763 YP_924839.1 CDS Noca_3652 NC_008699.1 3876743 3877399 R hypothetical protein complement(3876743..3877399) Nocardioides sp. JS614 4595764 YP_924840.1 CDS Noca_3653 NC_008699.1 3877396 3878814 R KEGG: aba:Acid345_4298 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase complement(3877396..3878814) Nocardioides sp. JS614 4595765 YP_924841.1 CDS Noca_3654 NC_008699.1 3878992 3879510 D PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sco:SCO4005 RNA polymerase sigma factor; sigma-70 factor 3878992..3879510 Nocardioides sp. JS614 4595766 YP_924842.1 CDS Noca_3655 NC_008699.1 3879507 3880646 D hypothetical protein 3879507..3880646 Nocardioides sp. JS614 4595767 YP_924843.1 CDS Noca_3656 NC_008699.1 3880705 3882864 D PFAM: MMPL domain protein; KEGG: rha:RHA1_ro04933 membrane efflux protein; MMPL domain-containing protein 3880705..3882864 Nocardioides sp. JS614 4595768 YP_924844.1 CDS Noca_3657 NC_008699.1 3882932 3883978 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease complement(3882932..3883978) Nocardioides sp. JS614 4595769 YP_924845.1 CDS Noca_3658 NC_008699.1 3884110 3884559 R PFAM: regulatory protein, AsnC/Lrp family; KEGG: rha:RHA1_ro03337 probable leucine-responsive regulator; AsnC family transcriptional regulator complement(3884110..3884559) Nocardioides sp. JS614 4595770 YP_924846.1 CDS Noca_3659 NC_008699.1 3884595 3885296 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: sco:SCO3362 hypothetical protein; lysine exporter protein LysE/YggA 3884595..3885296 Nocardioides sp. JS614 4595771 YP_924847.1 CDS Noca_3660 NC_008699.1 3885357 3885719 R TIGRFAM: death-on-curing family protein; PFAM: Death-on-curing protein; KEGG: rha:RHA1_ro05890 hypothetical protein; death-on-curing family protein complement(3885357..3885719) Nocardioides sp. JS614 4595772 YP_924848.1 CDS Noca_3661 NC_008699.1 3885716 3885961 R PFAM: CopG domain protein DNA-binding domain protein; KEGG: rha:RHA1_ro05889 hypothetical protein; CopG/DNA-binding domain-containing protein complement(3885716..3885961) Nocardioides sp. JS614 4595773 YP_924849.1 CDS Noca_3662 NC_008699.1 3886116 3886592 R TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: tfu:Tfu_2603 ribosomal-protein-alanine acetyltransferase; 30S ribosomal protein S18 complement(3886116..3886592) Nocardioides sp. JS614 4595774 YP_924850.1 CDS Noca_3663 NC_008699.1 3886589 3887227 R PFAM: peptidase M22, glycoprotease; KEGG: sco:SCO4750 hypothetical protein; peptidase M22, glycoprotease complement(3886589..3887227) Nocardioides sp. JS614 4595775 YP_924851.1 CDS Noca_3664 NC_008699.1 3887533 3888180 R PFAM: regulatory protein, LuxR; KEGG: sma:SAV6477 two-component system response regulator; regulatory protein LuxR complement(3887533..3888180) Nocardioides sp. JS614 4595776 YP_924852.1 CDS Noca_3665 NC_008699.1 3888249 3889331 R KEGG: sco:SCO6709 hypothetical protein; hypothetical protein complement(3888249..3889331) Nocardioides sp. JS614 4595777 YP_924853.1 CDS Noca_3666 NC_008699.1 3889528 3889830 R hypothetical protein complement(3889528..3889830) Nocardioides sp. JS614 4595778 YP_924854.1 CDS Noca_3667 NC_008699.1 3889830 3891032 R PFAM: fatty acid desaturase; KEGG: rha:RHA1_ro01720 probable fatty acid desaturase; fatty acid desaturase complement(3889830..3891032) Nocardioides sp. JS614 4595779 YP_924855.1 CDS Noca_3668 NC_008699.1 3891057 3892163 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: nfa:nfa46020 putative oxidoreductase; ferredoxin complement(3891057..3892163) Nocardioides sp. JS614 4595780 YP_924856.1 CDS Noca_3669 NC_008699.1 3892272 3892673 D KEGG: sco:SCO6061 putative oxidoreductase; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; methionine-R-sulfoxide reductase 3892272..3892673 Nocardioides sp. JS614 4595781 YP_924857.1 CDS Noca_3670 NC_008699.1 3892771 3893409 R hypothetical protein complement(3892771..3893409) Nocardioides sp. JS614 4595782 YP_924858.1 CDS Noca_3671 NC_008699.1 3893483 3894205 R PFAM: Chlorite dismutase; KEGG: sma:SAV2221 hypothetical protein; chlorite dismutase complement(3893483..3894205) Nocardioides sp. JS614 4595783 YP_924859.1 CDS Noca_3672 NC_008699.1 3894320 3895702 R KEGG: sco:SCO6041 putative protoporphyrinogen oxidase; TIGRFAM: protoporphyrinogen oxidase; PFAM: amine oxidase; FAD dependent oxidoreductase; protoporphyrinogen oxidase complement(3894320..3895702) Nocardioides sp. JS614 4595784 YP_924860.1 CDS Noca_3673 NC_008699.1 3895764 3896738 D KEGG: sma:SAV2224 lipoprotein; lipoprotein 3895764..3896738 Nocardioides sp. JS614 4595785 YP_924861.1 CDS Noca_3674 NC_008699.1 3896816 3897853 R KEGG: sco:SCO6031 uroporphyrinogen decarboxylase; TIGRFAM: uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); uroporphyrinogen decarboxylase complement(3896816..3897853) Nocardioides sp. JS614 4595786 YP_924862.1 CDS Noca_3675 NC_008699.1 3897925 3898554 D KEGG: sma:SAV2229 hypothetical protein; hypothetical protein 3897925..3898554 Nocardioides sp. JS614 4595787 YP_924863.1 CDS Noca_3676 NC_008699.1 3898556 3899884 D PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: sma:SAV2231 putative ribonuclease D; 3'-5' exonuclease 3898556..3899884 Nocardioides sp. JS614 4595788 YP_924864.1 CDS Noca_3677 NC_008699.1 3899985 3900689 D KEGG: mmc:Mmcs_4377 hypothetical protein; hypothetical protein 3899985..3900689 Nocardioides sp. JS614 4595789 YP_924865.1 CDS Noca_3678 NC_008699.1 3901098 3901766 D KEGG: sme:SMa1134 hypothetical protein; hypothetical protein 3901098..3901766 Nocardioides sp. JS614 4595790 YP_924866.1 CDS Noca_3679 NC_008699.1 3901958 3902680 R PFAM: inositol monophosphatase; KEGG: tfu:Tfu_1943 inositol-1(or 4)-monophosphatase; inositol-phosphate phosphatase complement(3901958..3902680) Nocardioides sp. JS614 4595791 YP_924867.1 CDS Noca_3680 NC_008699.1 3902770 3903864 R PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: mmc:Mmcs_2417 ABC transporter related; ABC transporter-like protein complement(3902770..3903864) Nocardioides sp. JS614 4595792 YP_924868.1 CDS Noca_3681 NC_008699.1 3903878 3904795 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mmc:Mmcs_2418 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(3903878..3904795) Nocardioides sp. JS614 4595793 YP_924869.1 CDS Noca_3682 NC_008699.1 3904792 3905643 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mmc:Mmcs_2419 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(3904792..3905643) Nocardioides sp. JS614 4595794 YP_924870.1 CDS Noca_3683 NC_008699.1 3905693 3906991 R PFAM: extracellular solute-binding protein, family 1; KEGG: mmc:Mmcs_2420 extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(3905693..3906991) Nocardioides sp. JS614 4597600 YP_924871.1 CDS Noca_3684 NC_008699.1 3907078 3907848 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mmc:Mmcs_2421 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(3907078..3907848) Nocardioides sp. JS614 4597601 YP_924872.1 CDS Noca_3685 NC_008699.1 3907845 3909377 R PFAM: carbohydrate kinase, FGGY; KEGG: mmc:Mmcs_2422 carbohydrate kinase, FGGY; carbohydrate kinase complement(3907845..3909377) Nocardioides sp. JS614 4597602 YP_924873.1 CDS Noca_3686 NC_008699.1 3909391 3910209 R PFAM: photosystem I assembly BtpA; KEGG: mmc:Mmcs_2423 photosystem I assembly BtpA; photosystem I assembly BtpA complement(3909391..3910209) Nocardioides sp. JS614 4597603 YP_924874.1 CDS Noca_3687 NC_008699.1 3910350 3911129 D PFAM: regulatory protein GntR, HTH; regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: mmc:Mmcs_2425 transcriptional regulator, DeoR family; regulatory protein DeoR 3910350..3911129 Nocardioides sp. JS614 4597604 YP_924875.1 CDS Noca_3688 NC_008699.1 3911251 3912651 R PFAM: extracellular solute-binding protein, family 1; KEGG: bcl:ABC3585 sugar ABC transporter substrate-binding protein; extracellular solute-binding protein complement(3911251..3912651) Nocardioides sp. JS614 4597605 YP_924876.1 CDS Noca_3689 NC_008699.1 3912784 3913560 D hypothetical protein 3912784..3913560 Nocardioides sp. JS614 4597606 YP_924877.1 CDS Noca_3690 NC_008699.1 3913651 3914028 R KEGG: mpa:MAP2218 hypothetical protein; hypothetical protein complement(3913651..3914028) Nocardioides sp. JS614 4597607 YP_924878.1 CDS Noca_3691 NC_008699.1 3914222 3914791 R KEGG: lxx:Lxx18480 hypothetical protein; hypothetical protein complement(3914222..3914791) Nocardioides sp. JS614 4597608 YP_924879.1 CDS Noca_3692 NC_008699.1 3914828 3918676 R KEGG: sco:SCO4092 ATP-dependent helicase; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases-like; ATP-dependent helicase HrpA complement(3914828..3918676) Nocardioides sp. JS614 4597609 YP_924880.1 CDS Noca_3693 NC_008699.1 3918724 3920310 D PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: rha:RHA1_ro05813 probable 3-oxosteroid 1-dehydrogenase; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 3918724..3920310 Nocardioides sp. JS614 4597610 YP_924881.1 CDS Noca_3694 NC_008699.1 3920320 3921564 D hypothetical protein 3920320..3921564 Nocardioides sp. JS614 4597611 YP_924882.1 CDS Noca_3695 NC_008699.1 3921640 3922350 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sma:SAV4198 putative two-component system response regulator; response regulator receiver 3921640..3922350 Nocardioides sp. JS614 4597612 YP_924883.1 CDS Noca_3696 NC_008699.1 3922347 3923756 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: sco:SCO4021 putative two component system histidine kinase; ATPase domain-containing protein 3922347..3923756 Nocardioides sp. JS614 4597613 YP_924884.1 CDS Noca_3697 NC_008699.1 3923804 3924415 R PFAM: regulatory protein, TetR; KEGG: rha:RHA1_ro06009 probable transcriptional regulator, TetR family; regulatory protein TetR complement(3923804..3924415) Nocardioides sp. JS614 4597614 YP_924885.1 CDS Noca_3698 NC_008699.1 3924458 3926047 D KEGG: nfa:nfa47010 putative monooxygenase; putative monooxygenase 3924458..3926047 Nocardioides sp. JS614 4597615 YP_924886.1 CDS Noca_3699 NC_008699.1 3926044 3926886 D PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro06007 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 3926044..3926886 Nocardioides sp. JS614 4597616 YP_924887.1 CDS Noca_3700 NC_008699.1 3926896 3928317 R PFAM: protein of unknown function DUF1212; KEGG: rha:RHA1_ro04718 possible amino acid export carrier protein; hypothetical protein complement(3926896..3928317) Nocardioides sp. JS614 4597617 YP_924888.1 CDS Noca_3701 NC_008699.1 3928347 3928850 D KEGG: sth:STH1763 hypothetical protein; hypothetical protein 3928347..3928850 Nocardioides sp. JS614 4597618 YP_924889.1 CDS Noca_3702 NC_008699.1 3928870 3930000 D ATP-dependent carboxylate-amine ligase; carboxylate-amine ligase 3928870..3930000 Nocardioides sp. JS614 4597619 YP_924890.1 CDS Noca_3703 NC_008699.1 3930069 3931157 R involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV complement(3930069..3931157) Nocardioides sp. JS614 4597620 YP_924891.1 CDS Noca_3704 NC_008699.1 3931154 3932254 R KEGG: nfa:nfa53760 hypothetical protein; hypothetical protein complement(3931154..3932254) Nocardioides sp. JS614 4597621 YP_924892.1 CDS Noca_3705 NC_008699.1 3932414 3933763 D PFAM: protein of unknown function RIO1; protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: lxx:Lxx00220 serine/threonine kinase; protein kinase 3932414..3933763 Nocardioides sp. JS614 4597622 YP_924893.1 CDS Noca_3706 NC_008699.1 3933845 3935263 D PFAM: protein of unknown function UPF0089; KEGG: rha:RHA1_ro08645 hypothetical protein; diacylglycerol O-acyltransferase 3933845..3935263 Nocardioides sp. JS614 4597623 YP_924894.1 CDS Noca_3707 NC_008699.1 3935260 3936438 R PFAM: DNA methylase N-4/N-6 domain protein; KEGG: sat:SYN_01825 type III restriction-modification system methylation subunit; adenine-specific DNA-methyltransferase complement(3935260..3936438) Nocardioides sp. JS614 4597624 YP_924895.1 CDS Noca_3708 NC_008699.1 3936805 3937362 D PFAM: peptidase M10A and M12B, matrixin and adamalysin; peptidase M10A and M12B, matrixin and adamalysin 3936805..3937362 Nocardioides sp. JS614 4597625 YP_924896.1 CDS Noca_3709 NC_008699.1 3937527 3939086 D PFAM: peptidase S15; KEGG: nph:NP4164A hypothetical protein; peptidase S15 3937527..3939086 Nocardioides sp. JS614 4597626 YP_924897.1 CDS Noca_3710 NC_008699.1 3939106 3940368 D KEGG: sth:STH163 hypothetical protein; similar to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase; exopolysaccharide biosynthesis protein-like 3939106..3940368 Nocardioides sp. JS614 4597627 YP_924898.1 CDS Noca_3711 NC_008699.1 3940350 3940799 R hypothetical protein complement(3940350..3940799) Nocardioides sp. JS614 4597628 YP_924899.1 CDS Noca_3712 NC_008699.1 3940856 3941422 D PFAM: Uracil-DNA glycosylase superfamily; KEGG: rha:RHA1_ro05894 G/U mismatch-specific DNA glycosylase; G/U mismatch-specific uracil-DNA glycosylase 3940856..3941422 Nocardioides sp. JS614 4597629 YP_924900.1 CDS Noca_3713 NC_008699.1 3941460 3942380 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: mca:MCA0612 UDP-glucose 4-epimerase; NAD-dependent epimerase/dehydratase 3941460..3942380 Nocardioides sp. JS614 4597630 YP_924901.1 CDS Noca_3714 NC_008699.1 3942390 3942776 R hypothetical protein complement(3942390..3942776) Nocardioides sp. JS614 4597631 YP_924902.1 CDS Noca_3715 NC_008699.1 3942924 3944237 R KEGG: mmc:Mmcs_1337 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase complement(3942924..3944237) Nocardioides sp. JS614 4597632 YP_924903.1 CDS Noca_3716 NC_008699.1 3944234 3944893 R PFAM: protein of unknown function UPF0126; KEGG: mmc:Mmcs_0767 protein of unknown function UPF0126; hypothetical protein complement(3944234..3944893) Nocardioides sp. JS614 4597633 YP_924904.1 CDS glgC NC_008699.1 3945032 3946279 R catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase complement(3945032..3946279) Nocardioides sp. JS614 4597634 YP_924905.1 CDS Noca_3718 NC_008699.1 3946332 3947525 D TIGRFAM: glycogen synthase; PFAM: glycosyl transferase, group 1; KEGG: fal:FRAAL4552 putative glycosyl transferase; glycogen synthase 3946332..3947525 Nocardioides sp. JS614 4597635 YP_924906.1 CDS Noca_3719 NC_008699.1 3947662 3948093 D hypothetical protein 3947662..3948093 Nocardioides sp. JS614 4597636 YP_924907.1 CDS Noca_3720 NC_008699.1 3948128 3948805 D KEGG: nfa:nfa29830 hypothetical protein; hypothetical protein 3948128..3948805 Nocardioides sp. JS614 4597637 YP_924908.1 CDS Noca_3721 NC_008699.1 3948790 3949170 R PFAM: protein of unknown function DUF427; KEGG: sme:SMb21379 hypothetical protein; hypothetical protein complement(3948790..3949170) Nocardioides sp. JS614 4598583 YP_924909.1 CDS Noca_3722 NC_008699.1 3949253 3949735 R KEGG: mmc:Mmcs_5328 carbohydrate kinase, thermoresistant glucokinase; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase; gluconate kinase complement(3949253..3949735) Nocardioides sp. JS614 4598584 YP_924910.1 CDS Noca_3723 NC_008699.1 3949745 3950398 R KEGG: sco:SCO0635 hypothetical protein; hypothetical protein complement(3949745..3950398) Nocardioides sp. JS614 4598585 YP_924911.1 CDS Noca_3724 NC_008699.1 3950379 3951047 R KEGG: nfa:nfa6820 putative phosphodiesterase; putative phosphodiesterase complement(3950379..3951047) Nocardioides sp. JS614 4598586 YP_924912.1 CDS Noca_3725 NC_008699.1 3951086 3951604 R hypothetical protein complement(3951086..3951604) Nocardioides sp. JS614 4598587 YP_924913.1 CDS Noca_3726 NC_008699.1 3951715 3952866 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: mmc:Mmcs_5118 acyl-CoA dehydrogenase-like protein; acyl-CoA dehydrogenase domain-containing protein 3951715..3952866 Nocardioides sp. JS614 4598588 YP_924914.1 CDS Noca_3727 NC_008699.1 3952892 3954028 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rha:RHA1_ro01910 probable acyl CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 3952892..3954028 Nocardioides sp. JS614 4598589 YP_924915.1 CDS Noca_3728 NC_008699.1 3954151 3954405 D hypothetical protein 3954151..3954405 Nocardioides sp. JS614 4598590 YP_924916.1 CDS Noca_3729 NC_008699.1 3954579 3954893 D KEGG: mmc:Mmcs_1345 protein of unknown function DUF909; hypothetical protein 3954579..3954893 Nocardioides sp. JS614 4598591 YP_924917.1 CDS Noca_3730 NC_008699.1 3954893 3955195 D KEGG: mmc:Mmcs_1344 putative EsaT-6 like protein 12 (hypothetical alanine rich protein); hypothetical protein 3954893..3955195 Nocardioides sp. JS614 4598592 YP_924918.1 CDS Noca_3731 NC_008699.1 3955192 3956562 D KEGG: nfa:nfa42710 hypothetical protein; hypothetical protein 3955192..3956562 Nocardioides sp. JS614 4598593 YP_924919.1 CDS Noca_3732 NC_008699.1 3956576 3956860 D hypothetical protein 3956576..3956860 Nocardioides sp. JS614 4598594 YP_924920.1 CDS Noca_3733 NC_008699.1 3957163 3957483 R hypothetical protein complement(3957163..3957483) Nocardioides sp. JS614 4598595 YP_924921.1 CDS Noca_3734 NC_008699.1 3957505 3957957 D hypothetical protein 3957505..3957957 Nocardioides sp. JS614 4598596 YP_924922.1 CDS Noca_3735 NC_008699.1 3958130 3958759 D KEGG: fal:FRAAL2306 hypothetical protein; hypothetical protein 3958130..3958759 Nocardioides sp. JS614 4598597 YP_924923.1 CDS Noca_3736 NC_008699.1 3958756 3959091 D KEGG: fra:Francci3_4441 conserved hypothetical protein; hypothetical protein 3958756..3959091 Nocardioides sp. JS614 4598598 YP_924924.1 CDS Noca_3737 NC_008699.1 3959106 3959597 D KEGG: mpa:MAP3097 hypothetical protein; hypothetical protein 3959106..3959597 Nocardioides sp. JS614 4598599 YP_924925.1 CDS Noca_3738 NC_008699.1 3959667 3960173 R hypothetical protein complement(3959667..3960173) Nocardioides sp. JS614 4598600 YP_924926.1 CDS Noca_3739 NC_008699.1 3960405 3961142 D KEGG: mmc:Mmcs_4460 hypothetical protein; hypothetical protein 3960405..3961142 Nocardioides sp. JS614 4598601 YP_924927.1 CDS Noca_3740 NC_008699.1 3961147 3961548 R KEGG: fra:Francci3_2396 conserved hypothetical protein; hypothetical protein complement(3961147..3961548) Nocardioides sp. JS614 4598602 YP_924928.1 CDS Noca_3741 NC_008699.1 3961565 3962029 R hypothetical protein complement(3961565..3962029) Nocardioides sp. JS614 4598603 YP_924929.1 CDS Noca_3742 NC_008699.1 3962104 3962454 R PFAM: regulatory protein, ArsR; KEGG: fra:Francci3_3239 transcriptional regulator, ArsR family; ArsR family transcriptional regulator complement(3962104..3962454) Nocardioides sp. JS614 4598604 YP_924930.1 CDS Noca_3743 NC_008699.1 3962547 3963350 D PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rpd:RPD_3422 methyltransferase type 11; type 11 methyltransferase 3962547..3963350 Nocardioides sp. JS614 4598605 YP_924931.1 CDS Noca_3744 NC_008699.1 3963347 3964438 D TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: mmc:Mmcs_4522 arsenical-resistance protein; arsenical-resistance protein 3963347..3964438 Nocardioides sp. JS614 4598606 YP_924932.1 CDS Noca_3745 NC_008699.1 3964435 3964878 D PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: sco:SCO6835 arsenate reductase; low molecular weight phosphotyrosine protein phosphatase 3964435..3964878 Nocardioides sp. JS614 4598607 YP_924933.1 CDS Noca_3746 NC_008699.1 3964875 3968090 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: rxy:Rxyl_0133 ATPase, P type cation/copper-transporter; heavy metal translocating P-type ATPase complement(3964875..3968090) Nocardioides sp. JS614 4598608 YP_924934.1 CDS Noca_3747 NC_008699.1 3968095 3968304 R PFAM: Heavy metal transport/detoxification protein; KEGG: nfa:nfa49020 putative metal-binding protein; heavy metal transport/detoxification protein complement(3968095..3968304) Nocardioides sp. JS614 4598609 YP_924935.1 CDS Noca_3748 NC_008699.1 3968752 3969165 D TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: mbo:Mb1796 hypothetical protein; alkylhydroperoxidase 3968752..3969165 Nocardioides sp. JS614 4598610 YP_924936.1 CDS Noca_3749 NC_008699.1 3969313 3970293 R PFAM: aldo/keto reductase; KEGG: tfu:Tfu_1674 putative oxidoreductase; aldo/keto reductase complement(3969313..3970293) Nocardioides sp. JS614 4598611 YP_924937.1 CDS Noca_3750 NC_008699.1 3970323 3970865 R hypothetical protein complement(3970323..3970865) Nocardioides sp. JS614 4598612 YP_924938.1 CDS Noca_3751 NC_008699.1 3970900 3971247 D KEGG: mpa:MAP1582c hypothetical protein; hypothetical protein 3970900..3971247 Nocardioides sp. JS614 4598613 YP_924939.1 CDS Noca_3752 NC_008699.1 3971291 3971623 R KEGG: rha:RHA1_ro02506 possible suppressor protein DnaK; putative suppressor protein DnaK complement(3971291..3971623) Nocardioides sp. JS614 4598614 YP_924940.1 CDS rumB NC_008699.1 3971620 3972759 R RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; 23S rRNA methyluridine methyltransferase complement(3971620..3972759) Nocardioides sp. JS614 4598615 YP_924941.1 CDS Noca_3754 NC_008699.1 3972972 3975377 D TIGRFAM: conserved repeat domain; PFAM: protein of unknown function DUF11; KEGG: rsp:RSP_3667 transcriptional regulator, AraC family with parallel beta-helix repeat; hypothetical protein 3972972..3975377 Nocardioides sp. JS614 4598616 YP_924942.1 CDS Noca_3755 NC_008699.1 3975452 3976807 D KEGG: sma:SAV5466 hypothetical protein; hypothetical protein 3975452..3976807 Nocardioides sp. JS614 4598617 YP_924943.1 CDS Noca_3756 NC_008699.1 3976841 3978034 R catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate coenzyme A ligase complement(3976841..3978034) Nocardioides sp. JS614 4598618 YP_924944.1 CDS tdh NC_008699.1 3978036 3979076 R converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase complement(3978036..3979076) Nocardioides sp. JS614 4598619 YP_924945.1 CDS Noca_3758 NC_008699.1 3979126 3981861 R KEGG: sma:SAV2604 secreted protein; secreted protein complement(3979126..3981861) Nocardioides sp. JS614 4598620 YP_924946.1 CDS Noca_3759 NC_008699.1 3981907 3983184 R PFAM: sodium/hydrogen exchanger; KEGG: rha:RHA1_ro01570 Na+/H+ antiporter; sodium/hydrogen exchanger complement(3981907..3983184) Nocardioides sp. JS614 4598621 YP_924947.1 CDS Noca_3760 NC_008699.1 3983280 3984590 D KEGG: sma:SAV5466 hypothetical protein; hypothetical protein 3983280..3984590 Nocardioides sp. JS614 4598622 YP_924948.1 CDS Noca_3761 NC_008699.1 3984886 3985152 D hypothetical protein 3984886..3985152 Nocardioides sp. JS614 4597507 YP_924949.1 CDS Noca_3762 NC_008699.1 3985173 3985607 D KEGG: ade:Adeh_1681 PE-PGRS family protein; PE-PGRS family protein 3985173..3985607 Nocardioides sp. JS614 4597508 YP_924950.1 CDS Noca_3763 NC_008699.1 3985581 3985886 R PFAM: Excinuclease ABC, C subunit domain protein; KEGG: rpc:RPC_0376 excinuclease ABC, C subunit-like; excinuclease ABC subunit C complement(3985581..3985886) Nocardioides sp. JS614 4597509 YP_924951.1 CDS Noca_3764 NC_008699.1 3986154 3986891 D KEGG: mmc:Mmcs_4669 AAA ATPase containing von Willebrand factor type A (vWA) domain-like protein; hypothetical protein 3986154..3986891 Nocardioides sp. JS614 4597510 YP_924952.1 CDS Noca_3765 NC_008699.1 3986962 3987534 D PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sma:SAV4735 RNA polymerase ECF-subfamily sigma factor; sigma-70 region 4 domain-containing protein 3986962..3987534 Nocardioides sp. JS614 4597511 YP_924953.1 CDS Noca_3766 NC_008699.1 3987531 3988394 D KEGG: hsa:93953 acidic repeat containing; hypothetical protein 3987531..3988394 Nocardioides sp. JS614 4597512 YP_924954.1 CDS Noca_3767 NC_008699.1 3988361 3989515 R PFAM: fatty acid desaturase; KEGG: fal:FRAAL6454 linoleoyl-CoA desaturase (delta(6)-desaturase); fatty acid desaturase complement(3988361..3989515) Nocardioides sp. JS614 4597513 YP_924955.1 CDS Noca_3768 NC_008699.1 3989685 3990443 D PFAM: regulatory proteins, IclR; KEGG: sco:SCO7618 transcriptional regulator; regulatory proteins IclR 3989685..3990443 Nocardioides sp. JS614 4597514 YP_924956.1 CDS Noca_3769 NC_008699.1 3990516 3991550 D PFAM: dehydrogenase, E1 component; KEGG: tte:TTE0688 Thiamine pyrophosphate-dependent dehydrogenases, E1 component alpha subunit; pyruvate dehydrogenase 3990516..3991550 Nocardioides sp. JS614 4597515 YP_924957.1 CDS Noca_3770 NC_008699.1 3991561 3992604 D PFAM: Transketolase, central region; Transketolase domain protein; KEGG: tte:TTE0689 Thiamine pyrophosphate-dependent dehydrogenases, E1 component beta subunit; transketolase, central region 3991561..3992604 Nocardioides sp. JS614 4597516 YP_924958.1 CDS Noca_3771 NC_008699.1 3992601 3992837 D PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: rsp:RSP_0964 dihydrolipoamide acetyltransferase; biotin/lipoyl attachment domain-containing protein 3992601..3992837 Nocardioides sp. JS614 4597517 YP_924959.1 CDS Noca_3772 NC_008699.1 3993006 3994226 D TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: pol:Bpro_1180 40-residue YVTN beta-propeller repeat; hypothetical protein 3993006..3994226 Nocardioides sp. JS614 4597518 YP_924960.1 CDS Noca_3773 NC_008699.1 3994331 3995125 D PFAM: prolipoprotein diacylglyceryl transferase; KEGG: ctc:CTC00251 prolipoprotein diacylglyceryl transferase; prolipoprotein diacylglyceryl transferase 3994331..3995125 Nocardioides sp. JS614 4597519 YP_924961.1 CDS Noca_3774 NC_008699.1 3995170 3995970 D PFAM: peptidase M23B; KEGG: sco:SCO4108 probable peptidase; peptidase M23B 3995170..3995970 Nocardioides sp. JS614 4597520 YP_924962.1 CDS Noca_3775 NC_008699.1 3995974 3996879 R PFAM: ABC transporter related; YHS domain protein; SMART: AAA ATPase; TRASH domain protein; KEGG: rpe:RPE_3321 ABC transporter related; ABC transporter-like protein complement(3995974..3996879) Nocardioides sp. JS614 4597521 YP_924963.1 CDS Noca_3776 NC_008699.1 3996876 3998018 R PFAM: protein of unknown function DUF214; KEGG: dvu:DVUA0023 ABC transporter, permease protein, putative; hypothetical protein complement(3996876..3998018) Nocardioides sp. JS614 4597522 YP_924964.1 CDS Noca_3777 NC_008699.1 3998015 3999166 R PFAM: protein of unknown function DUF214; KEGG: bpm:BURPS1710b_A1034 ABC transporter, permease protein; hypothetical protein complement(3998015..3999166) Nocardioides sp. JS614 4597523 YP_924965.1 CDS Noca_3778 NC_008699.1 3999194 3999532 R hypothetical protein complement(3999194..3999532) Nocardioides sp. JS614 4597524 YP_924966.1 CDS Noca_3779 NC_008699.1 3999529 3999774 R KEGG: rha:RHA1_ro11211 hypothetical protein; hypothetical protein complement(3999529..3999774) Nocardioides sp. JS614 4597525 YP_924967.1 CDS Noca_3780 NC_008699.1 3999907 4000272 R hypothetical protein complement(3999907..4000272) Nocardioides sp. JS614 4597526 YP_924968.1 CDS Noca_3781 NC_008699.1 4000346 4000636 R KEGG: fra:Francci3_2227 conserved hypothetical protein; hypothetical protein complement(4000346..4000636) Nocardioides sp. JS614 4597527 YP_924969.1 CDS Noca_3782 NC_008699.1 4000718 4001611 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rha:RHA1_ro11203 response regulator, two-component system; response regulator receiver 4000718..4001611 Nocardioides sp. JS614 4597528 YP_924970.1 CDS Noca_3783 NC_008699.1 4001774 4002100 D PFAM: glutaredoxin 2; glutaredoxin 4001774..4002100 Nocardioides sp. JS614 4597529 YP_924971.1 CDS Noca_3784 NC_008699.1 4002093 4003046 D PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: rxy:Rxyl_1821 cytochrome c biogenesis protein, transmembrane region; cytochrome c biogenesis protein, transmembrane region 4002093..4003046 Nocardioides sp. JS614 4597530 YP_924972.1 CDS Noca_3785 NC_008699.1 4003059 4003682 D PFAM: Redoxin domain protein; KEGG: ttj:TTHA1300 bacterioferritin comigratory protein, thiol peroxidase, putative; redoxin domain-containing protein 4003059..4003682 Nocardioides sp. JS614 4597531 YP_924973.1 CDS Noca_3786 NC_008699.1 4003789 4004100 D PFAM: protein of unknown function DUF156; KEGG: rha:RHA1_ro11208 hypothetical protein; hypothetical protein 4003789..4004100 Nocardioides sp. JS614 4597532 YP_924974.1 CDS Noca_3787 NC_008699.1 4004327 4004545 D PFAM: Heavy metal transport/detoxification protein; KEGG: rha:RHA1_ro11206 Cu(2+)-exporting ATPase; heavy metal transport/detoxification protein 4004327..4004545 Nocardioides sp. JS614 4597533 YP_924975.1 CDS Noca_3788 NC_008699.1 4004575 4006932 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: rha:RHA1_ro11213 probable copper resistance transporter, ATPase component; heavy metal translocating P-type ATPase 4004575..4006932 Nocardioides sp. JS614 4597534 YP_924976.1 CDS Noca_3789 NC_008699.1 4007143 4008918 D PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; SMART: Animal peptidoglycan recognition protein PGRP; KEGG: sco:SCO3040 secreted protein; N-acetylmuramoyl-L-alanine amidase 4007143..4008918 Nocardioides sp. JS614 4597535 YP_924977.1 CDS Noca_3790 NC_008699.1 4008956 4009546 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mpa:MAP0199 hypothetical protein; type 11 methyltransferase 4008956..4009546 Nocardioides sp. JS614 4597536 YP_924978.1 CDS Noca_3791 NC_008699.1 4009543 4010001 D hypothetical protein 4009543..4010001 Nocardioides sp. JS614 4597537 YP_924979.1 CDS Noca_3792 NC_008699.1 4010018 4010281 R hypothetical protein complement(4010018..4010281) Nocardioides sp. JS614 4597538 YP_924980.1 CDS Noca_3793 NC_008699.1 4010724 4012670 D PFAM: thiamineS protein; nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: pai:PAE2577 ferredoxin-nitrite reductase; assimilatory nitrite reductase (ferredoxin) 4010724..4012670 Nocardioides sp. JS614 4597539 YP_924981.1 CDS Noca_3794 NC_008699.1 4012676 4013524 D PFAM: phosphoadenosine phosphosulfate reductase; KEGG: pai:PAE2575 phosphoadenosine phosphosulfate reductase (PAPS reductase); phosphoadenylylsulfate reductase 4012676..4013524 Nocardioides sp. JS614 4597540 YP_924982.1 CDS Noca_3795 NC_008699.1 4013521 4014129 D hypothetical protein 4013521..4014129 Nocardioides sp. JS614 4597541 YP_924983.1 CDS Noca_3796 NC_008699.1 4014187 4014354 D hypothetical protein 4014187..4014354 Nocardioides sp. JS614 4597542 YP_924984.1 CDS Noca_3797 NC_008699.1 4014351 4015448 R hypothetical protein complement(4014351..4015448) Nocardioides sp. JS614 4599020 YP_924985.1 CDS Noca_3798 NC_008699.1 4015675 4015989 D hypothetical protein 4015675..4015989 Nocardioides sp. JS614 4599021 YP_924986.1 CDS Noca_3799 NC_008699.1 4016036 4016293 R hypothetical protein complement(4016036..4016293) Nocardioides sp. JS614 4599022 YP_924987.1 CDS Noca_3800 NC_008699.1 4016438 4016626 D KEGG: rha:RHA1_ro00019 hypothetical protein; hypothetical protein 4016438..4016626 Nocardioides sp. JS614 4599023 YP_924988.1 CDS Noca_3801 NC_008699.1 4016660 4017124 R PFAM: protein of unknown function DUF1130; KEGG: rha:RHA1_ro08282 hypothetical protein; hypothetical protein complement(4016660..4017124) Nocardioides sp. JS614 4599024 YP_924989.1 CDS Noca_3802 NC_008699.1 4017273 4017488 R hypothetical protein complement(4017273..4017488) Nocardioides sp. JS614 4599025 YP_924990.1 CDS Noca_3803 NC_008699.1 4017647 4019506 R KEGG: fra:Francci3_3745 superfamily I DNA and RNA helicases and helicase subunits-like; hypothetical protein complement(4017647..4019506) Nocardioides sp. JS614 4599026 YP_924991.1 CDS Noca_3804 NC_008699.1 4019544 4020641 D KEGG: rxy:Rxyl_2373 membrane protein-like protein; hypothetical protein 4019544..4020641 Nocardioides sp. JS614 4599027 YP_924992.1 CDS Noca_3805 NC_008699.1 4020718 4021419 R SMART: protein of unknown function SprT; KEGG: lxx:Lxx20670 hypothetical protein; hypothetical protein complement(4020718..4021419) Nocardioides sp. JS614 4599028 YP_924993.1 CDS Noca_3806 NC_008699.1 4021522 4022514 R PFAM: ERCC4 domain protein; KEGG: mbo:Mb2558 hypothetical protein; ERCC4 domain-containing protein complement(4021522..4022514) Nocardioides sp. JS614 4599029 YP_924994.1 CDS Noca_3807 NC_008699.1 4022533 4023732 R TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase, class V; KEGG: sco:SCO1054 aminotransferase; cysteine desulfurase complement(4022533..4023732) Nocardioides sp. JS614 4599030 YP_924995.1 CDS Noca_3808 NC_008699.1 4023779 4024774 R KEGG: fal:FRAAL5342 hypothetical protein; putative DNA helicase II homolog; hypothetical protein complement(4023779..4024774) Nocardioides sp. JS614 4599031 YP_924996.1 CDS Noca_3809 NC_008699.1 4025003 4028104 D PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sco:SCO2863 helicase; type III restriction enzyme, res subunit 4025003..4028104 Nocardioides sp. JS614 4599032 YP_924997.1 CDS Noca_3810 NC_008699.1 4028263 4029480 D PFAM: BRCT domain protein; Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: tfu:Tfu_0714 exonuclease; exonuclease 4028263..4029480 Nocardioides sp. JS614 4599033 YP_924998.1 CDS Noca_3811 NC_008699.1 4029737 4032607 R catalyzes the reduction of ribonucleotides to deoxyribonucleotides; the rate-limiting step in dNTP synthesis; vitamin B12-dependent ribonucleotide reductase complement(4029737..4032607) Nocardioides sp. JS614 4599034 YP_924999.1 CDS Noca_3812 NC_008699.1 4032748 4033266 R PFAM: ATP-cone domain protein; KEGG: tfu:Tfu_2150 hypothetical protein; ATP-cone domain-containing protein complement(4032748..4033266) Nocardioides sp. JS614 4599035 YP_925000.1 CDS Noca_3813 NC_008699.1 4033847 4034620 D PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: mmc:Mmcs_1281 RNA polymerase, sigma 28 subunit; sigma-70 region 2 domain-containing protein 4033847..4034620 Nocardioides sp. JS614 4595878 YP_925001.1 CDS Noca_3814 NC_008699.1 4034683 4035132 D hypothetical protein 4034683..4035132 Nocardioides sp. JS614 4595879 YP_925002.1 CDS Noca_3815 NC_008699.1 4035388 4035744 R PFAM: Peptidoglycan-binding LysM; KEGG: fra:Francci3_3509 peptidoglycan-binding LysM; peptidoglycan-binding LysM complement(4035388..4035744) Nocardioides sp. JS614 4595880 YP_925003.1 CDS Noca_3816 NC_008699.1 4035962 4036648 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dar:Daro_1357 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(4035962..4036648) Nocardioides sp. JS614 4595881 YP_925004.1 CDS Noca_3817 NC_008699.1 4036856 4037596 D Represses a number of genes involved in the response to DNA damage; LexA repressor 4036856..4037596 Nocardioides sp. JS614 4595882 YP_925005.1 CDS Noca_3818 NC_008699.1 4037660 4038607 D KEGG: sco:SCO2807 integral membrane protein; integral membrane protein 4037660..4038607 Nocardioides sp. JS614 4595883 YP_925006.1 CDS Noca_3819 NC_008699.1 4038844 4040415 D PFAM: Alkaline phosphatase; KEGG: sco:SCO2068 secreted alkaline phosphatase; alkaline phosphatase 4038844..4040415 Nocardioides sp. JS614 4595884 YP_925007.1 CDS Noca_3820 NC_008699.1 4040538 4041734 D PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: pgi:PG0126 type I phosphodiesterase/nucleotide pyrophosphatase family protein; type I phosphodiesterase/nucleotide pyrophosphatase 4040538..4041734 Nocardioides sp. JS614 4595885 YP_925008.1 CDS Noca_3821 NC_008699.1 4041731 4042258 D hypothetical protein 4041731..4042258 Nocardioides sp. JS614 4595886 YP_925009.1 CDS Noca_3822 NC_008699.1 4042263 4043735 D KEGG: mxa:MXAN_6640 hypothetical protein; hypothetical protein 4042263..4043735 Nocardioides sp. JS614 4595887 YP_925010.1 CDS Noca_3823 NC_008699.1 4043771 4045360 D KEGG: mxa:MXAN_6640 hypothetical protein; hypothetical protein 4043771..4045360 Nocardioides sp. JS614 4595888 YP_925011.1 CDS Noca_3824 NC_008699.1 4045353 4047383 R SMART: helicase c2; DEAD-like helicases-like; KEGG: sma:SAV2464 putative ATP-dependent helicase; helicase c2 complement(4045353..4047383) Nocardioides sp. JS614 4595889 YP_925012.1 CDS Noca_3825 NC_008699.1 4047528 4048001 R hypothetical protein complement(4047528..4048001) Nocardioides sp. JS614 4595890 YP_925013.1 CDS Noca_3826 NC_008699.1 4048052 4048738 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sma:SAV5250 two-component system response regulator; response regulator receiver 4048052..4048738 Nocardioides sp. JS614 4595891 YP_925014.1 CDS Noca_3827 NC_008699.1 4048750 4050027 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: sco:SCO2800 two component system histidine kinase; ATPase domain-containing protein 4048750..4050027 Nocardioides sp. JS614 4595892 YP_925015.1 CDS Noca_3828 NC_008699.1 4050622 4051041 D KEGG: cef:CE0820 hypothetical protein; hypothetical protein 4050622..4051041 Nocardioides sp. JS614 4595893 YP_925016.1 CDS Noca_3829 NC_008699.1 4051046 4051987 D PFAM: ApbE family lipoprotein; KEGG: fal:FRAAL3949 putative thiamine biosynthesis lipoprotein, ApbE-like; ApbE family lipoprotein 4051046..4051987 Nocardioides sp. JS614 4595894 YP_925017.1 CDS Noca_3830 NC_008699.1 4051984 4052571 D PFAM: Ferric reductase domain protein transmembrane component, N-terminal domain; KEGG: fra:Francci3_2586 putative integral membrane protein; ferric reductase domain-containing protein 4051984..4052571 Nocardioides sp. JS614 4595895 YP_925018.1 CDS Noca_3831 NC_008699.1 4052568 4053806 D PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: fra:Francci3_2587 respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; respiratory-chain NADH dehydrogenase domain-containing protein 4052568..4053806 Nocardioides sp. JS614 4595896 YP_925019.1 CDS Noca_3832 NC_008699.1 4053803 4053997 D KEGG: fra:Francci3_2588 hypothetical protein; hypothetical protein 4053803..4053997 Nocardioides sp. JS614 4595897 YP_925020.1 CDS Noca_3835 NC_008699.1 4054562 4055278 R hypothetical protein complement(4054562..4055278) Nocardioides sp. JS614 4595900 YP_925021.1 CDS Noca_3836 NC_008699.1 4055368 4056264 D PFAM: alpha/beta hydrolase fold; KEGG: sma:SAV5711 hydrolase; alpha/beta hydrolase fold protein 4055368..4056264 Nocardioides sp. JS614 4595901 YP_925022.1 CDS Noca_3837 NC_008699.1 4056426 4057907 R PFAM: GTP-binding protein, HSR1-related; KEGG: sma:SAV2470 putative ATP/GTP-binding protein; HSR1-like GTP-binding protein complement(4056426..4057907) Nocardioides sp. JS614 4595902 YP_925023.1 CDS Noca_3838 NC_008699.1 4057991 4060474 D PFAM: FAD dependent oxidoreductase; glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein, C-terminal barrel; KEGG: sit:TM1040_0434 FAD dependent oxidoreductase; FAD dependent oxidoreductase 4057991..4060474 Nocardioides sp. JS614 4595903 YP_925024.1 CDS Noca_3839 NC_008699.1 4060471 4061052 D KEGG: dge:Dgeo_2867 phosphoribulokinase/uridine kinase; phosphoribulokinase/uridine kinase 4060471..4061052 Nocardioides sp. JS614 4595904 YP_925025.1 CDS Noca_3840 NC_008699.1 4061142 4061930 R PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: tfu:Tfu_0275 putative short chain dehydrogenase; short-chain dehydrogenase/reductase SDR complement(4061142..4061930) Nocardioides sp. JS614 4595905 YP_925026.1 CDS Noca_3841 NC_008699.1 4061990 4062829 R PFAM: diaminopimelate epimerase; KEGG: sma:SAV2473 putative diaminopimelate epimerase; diaminopimelate epimerase complement(4061990..4062829) Nocardioides sp. JS614 4595906 YP_925027.1 CDS Noca_3842 NC_008699.1 4062826 4063383 R KEGG: mmc:Mmcs_0215 bifunctional deaminase-reductase-like protein; bifunctional deaminase-reductase-like protein complement(4062826..4063383) Nocardioides sp. JS614 4595907 YP_925028.1 CDS Noca_3843 NC_008699.1 4063380 4064312 R KEGG: sco:SCO5791 putative tRNA delta(2)-isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; tRNA delta(2)-isopentenylpyrophosphate transferase complement(4063380..4064312) Nocardioides sp. JS614 4595908 YP_925029.1 CDS Noca_3844 NC_008699.1 4064766 4065224 D PFAM: NUDIX hydrolase; KEGG: fra:Francci3_2547 NUDIX hydrolase; NUDIX hydrolase 4064766..4065224 Nocardioides sp. JS614 4595909 YP_925030.1 CDS Noca_3845 NC_008699.1 4065239 4065502 D hypothetical protein 4065239..4065502 Nocardioides sp. JS614 4595910 YP_925031.1 CDS Noca_3846 NC_008699.1 4065499 4065810 D hypothetical protein 4065499..4065810 Nocardioides sp. JS614 4595911 YP_925032.1 CDS Noca_3847 NC_008699.1 4065829 4067319 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase complement(4065829..4067319) Nocardioides sp. JS614 4595912 YP_925033.1 CDS Noca_3848 NC_008699.1 4067374 4067730 D KEGG: rha:RHA1_ro05927 hypothetical protein; hypothetical protein 4067374..4067730 Nocardioides sp. JS614 4595913 YP_925034.1 CDS Noca_3849 NC_008699.1 4067748 4069241 D PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: sco:SCO4428 putative secreted protein; phosphotransferase domain-containing protein 4067748..4069241 Nocardioides sp. JS614 4595914 YP_925035.1 CDS Noca_3850 NC_008699.1 4069225 4069689 R KEGG: abo:ABO_1590 hypothetical protein; hypothetical protein complement(4069225..4069689) Nocardioides sp. JS614 4595915 YP_925036.1 CDS Noca_3851 NC_008699.1 4069801 4070685 R PFAM: PASTA domain containing protein; protein PASTA domain-containing protein complement(4069801..4070685) Nocardioides sp. JS614 4597986 YP_925037.1 CDS Noca_3852 NC_008699.1 4070751 4071560 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sma:SAV3570 putative trans-aconitate methyltransferase; trans-aconitate 2-methyltransferase complement(4070751..4071560) Nocardioides sp. JS614 4597987 YP_925038.1 CDS Noca_3853 NC_008699.1 4071627 4072115 D PFAM: regulatory protein, MarR; KEGG: sco:SCO3133 MarR-family regulator; regulatory protein MarR 4071627..4072115 Nocardioides sp. JS614 4597988 YP_925039.1 CDS Noca_3854 NC_008699.1 4072146 4073981 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tfu:Tfu_0409 ABC transporter, ATP-binding subunit; ABC transporter-like protein complement(4072146..4073981) Nocardioides sp. JS614 4597989 YP_925040.1 CDS Noca_3855 NC_008699.1 4073974 4074867 R catalyzes the phosphorylation of 4-diphosphocytidyl-2-C-methyl-D-erythritol in the nonmevalonate pathway of isoprenoid biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase complement(4073974..4074867) Nocardioides sp. JS614 4597990 YP_925041.1 CDS ksgA NC_008699.1 4074870 4075763 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(4074870..4075763) Nocardioides sp. JS614 4597991 YP_925042.1 CDS Noca_3857 NC_008699.1 4075819 4076982 R PFAM: protein of unknown function DUF348; Transglycosylase domain protein; G5 domain protein; KEGG: nfa:nfa49040 hypothetical protein; transglycosylase domain-containing protein complement(4075819..4076982) Nocardioides sp. JS614 4597992 YP_925043.1 CDS Noca_3858 NC_008699.1 4077193 4078020 R TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: sco:SCO3151 putative deoxyribonuclease; TatD family hydrolase complement(4077193..4078020) Nocardioides sp. JS614 4597993 YP_925044.1 CDS Noca_3859 NC_008699.1 4078017 4078853 R PFAM: alpha/beta hydrolase fold; KEGG: rha:RHA1_ro01528 possible epoxide hydrolase; alpha/beta hydrolase fold protein complement(4078017..4078853) Nocardioides sp. JS614 4597994 YP_925045.1 CDS Noca_3860 NC_008699.1 4078856 4079698 R PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: sma:SAV3591 putative tetrapyrrole methylase; uroporphyrin-III C/tetrapyrrole methyltransferase complement(4078856..4079698) Nocardioides sp. JS614 4597995 YP_925046.1 CDS Noca_3861 NC_008699.1 4079765 4081390 D PFAM: glycosyl transferase, family 39; KEGG: pac:PPA0523 putative dolichyl-phosphate-mannose-protein mannosyltransferase; glycosyl transferase family protein 4079765..4081390 Nocardioides sp. JS614 4597996 YP_925047.1 CDS Noca_3862 NC_008699.1 4081595 4082203 R PFAM: regulatory protein, TetR; KEGG: nfa:nfa34140 putative transcriptional regulator; regulatory protein TetR complement(4081595..4082203) Nocardioides sp. JS614 4597997 YP_925048.1 CDS fabG NC_008699.1 4082251 4083003 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 4082251..4083003 Nocardioides sp. JS614 4597998 YP_925049.1 CDS Noca_3864 NC_008699.1 4083003 4083821 D PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sco:SCO1692 oxidoreductase; short-chain dehydrogenase/reductase SDR 4083003..4083821 Nocardioides sp. JS614 4597999 YP_925050.1 CDS Noca_3865 NC_008699.1 4083818 4084870 D PFAM: aminoglycoside phosphotransferase; KEGG: nfa:nfa34090 putative phosphotransferase; aminoglycoside phosphotransferase 4083818..4084870 Nocardioides sp. JS614 4598000 YP_925051.1 CDS Noca_3866 NC_008699.1 4084872 4086095 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: nfa:nfa34080 putative acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 4084872..4086095 Nocardioides sp. JS614 4598001 YP_925052.1 CDS Noca_3867 NC_008699.1 4086264 4087196 D PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: bur:Bcep18194_C6777 lipolytic enzyme; alpha/beta hydrolase domain-containing protein 4086264..4087196 Nocardioides sp. JS614 4598002 YP_925053.1 CDS Noca_3868 NC_008699.1 4087569 4088051 D PFAM: DGPFAETKE family protein; KEGG: sco:SCO4453 hypothetical protein; DGPFAETKE family protein 4087569..4088051 Nocardioides sp. JS614 4598003 YP_925054.1 CDS Noca_3869 NC_008699.1 4088066 4089199 D PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: sco:SCO4452 RNA polymerase sigma factor; sigma-70 region 2 domain-containing protein 4088066..4089199 Nocardioides sp. JS614 4598004 YP_925055.1 CDS Noca_3870 NC_008699.1 4089165 4089782 R PFAM: putative RNA methylase; methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: pac:PPA1810 hypothetical protein; methyltransferase small complement(4089165..4089782) Nocardioides sp. JS614 4598005 YP_925056.1 CDS Noca_3871 NC_008699.1 4089775 4090581 R KEGG: tfu:Tfu_2616 tRNA pseudouridine synthase; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; tRNA pseudouridine synthase A complement(4089775..4090581) Nocardioides sp. JS614 4598006 YP_925057.1 CDS Noca_3872 NC_008699.1 4090699 4091601 R PFAM: PfkB domain protein; KEGG: rha:RHA1_ro02811 fructokinase; ribokinase-like domain-containing protein complement(4090699..4091601) Nocardioides sp. JS614 4598007 YP_925058.1 CDS Noca_3873 NC_008699.1 4091643 4092002 D PFAM: regulatory protein GntR, HTH; KEGG: nfa:nfa49100 putative transcriptional regulator; GntR family transcriptional regulator 4091643..4092002 Nocardioides sp. JS614 4598008 YP_925059.1 CDS Noca_3874 NC_008699.1 4092090 4092698 R PFAM: ribosomal protein L17; KEGG: mmc:Mmcs_1114 ribosomal protein L17; 50S ribosomal protein L17 complement(4092090..4092698) Nocardioides sp. JS614 4598009 YP_925060.1 CDS Noca_3875 NC_008699.1 4092849 4093865 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(4092849..4093865) Nocardioides sp. JS614 4598010 YP_925061.1 CDS rpsD NC_008699.1 4094017 4094625 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(4094017..4094625) Nocardioides sp. JS614 4598011 YP_925062.1 CDS Noca_3877 NC_008699.1 4094657 4095064 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(4094657..4095064) Nocardioides sp. JS614 4598012 YP_925063.2 CDS rpsM NC_008699.1 4095154 4095528 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(4095154..4095528) Nocardioides sp. JS614 4598013 YP_925064.1 CDS rpmJ NC_008699.1 4095689 4095802 R smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 complement(4095689..4095802) Nocardioides sp. JS614 4598014 YP_925065.1 CDS infA NC_008699.1 4095835 4096056 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(4095835..4096056) Nocardioides sp. JS614 4598015 YP_925066.1 CDS Noca_3881 NC_008699.1 4096314 4097411 R PFAM: luciferase family protein; KEGG: mpa:MAP2513c hypothetical protein; luciferase family protein complement(4096314..4097411) Nocardioides sp. JS614 4598016 YP_925067.1 CDS Noca_3882 NC_008699.1 4097415 4098473 R PFAM: Integral membrane protein TerC; KEGG: mmc:Mmcs_4785 integral membrane protein TerC; integral membrane protein TerC complement(4097415..4098473) Nocardioides sp. JS614 4598017 YP_925068.1 CDS Noca_3883 NC_008699.1 4098702 4099520 R KEGG: fal:FRAAL1104 methionine aminopeptidase C (MAP) (peptidase M); TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; methionine aminopeptidase complement(4098702..4099520) Nocardioides sp. JS614 4598018 YP_925069.1 CDS adk NC_008699.1 4099531 4100106 R essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(4099531..4100106) Nocardioides sp. JS614 4598019 YP_925070.1 CDS secY NC_008699.1 4100167 4101480 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(4100167..4101480) Nocardioides sp. JS614 4598020 YP_925071.1 CDS rplO NC_008699.1 4101646 4102086 R late assembly protein; 50S ribosomal protein L15 complement(4101646..4102086) Nocardioides sp. JS614 4598021 YP_925072.1 CDS rpmD NC_008699.1 4102088 4102270 R L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 complement(4102088..4102270) Nocardioides sp. JS614 4598022 YP_925073.1 CDS Noca_3888 NC_008699.1 4102270 4102887 R TIGRFAM: ribosomal protein S5; PFAM: ribosomal protein S5 domain protein; Ribosomal protein S5-like; KEGG: sco:SCO4719 30S ribosomal protein S5; 30S ribosomal protein S5 complement(4102270..4102887) Nocardioides sp. JS614 4598023 YP_925074.1 CDS Noca_3889 NC_008699.1 4102960 4103343 R TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: pac:PPA1845 50S ribosomal protein L18; 50S ribosomal protein L18 complement(4102960..4103343) Nocardioides sp. JS614 4598024 YP_925075.1 CDS rplF NC_008699.1 4103346 4103885 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(4103346..4103885) Nocardioides sp. JS614 4598025 YP_925076.1 CDS rpsH NC_008699.1 4103917 4104324 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(4103917..4104324) Nocardioides sp. JS614 4598026 YP_925077.1 CDS Noca_3892 NC_008699.1 4104474 4104659 R PFAM: ribosomal protein S14; KEGG: pac:PPA1849 30S ribosomal protein S14; 30S ribosomal protein S14 complement(4104474..4104659) Nocardioides sp. JS614 4598027 YP_925078.1 CDS rplE NC_008699.1 4104661 4105257 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(4104661..4105257) Nocardioides sp. JS614 4598028 YP_925079.1 CDS rplX NC_008699.1 4105257 4105628 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(4105257..4105628) Nocardioides sp. JS614 4598029 YP_925080.1 CDS rplN NC_008699.1 4105632 4106000 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(4105632..4106000) Nocardioides sp. JS614 4598030 YP_925081.1 CDS Noca_3896 NC_008699.1 4106131 4106412 R PFAM: ribosomal protein S17; KEGG: sma:SAV4935 putative ribosomal protein S17; 30S ribosomal protein S17 complement(4106131..4106412) Nocardioides sp. JS614 4598031 YP_925082.1 CDS Noca_3897 NC_008699.1 4106409 4106651 R PFAM: ribosomal protein L29; KEGG: cdi:DIP0481 50S ribosomal protein L29; 50S ribosomal protein L29 complement(4106409..4106651) Nocardioides sp. JS614 4598032 YP_925083.1 CDS rplP NC_008699.1 4106651 4107070 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(4106651..4107070) Nocardioides sp. JS614 4598033 YP_925084.1 CDS rpsC NC_008699.1 4107075 4107911 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(4107075..4107911) Nocardioides sp. JS614 4598034 YP_925085.1 CDS rplV NC_008699.1 4107911 4108351 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(4107911..4108351) Nocardioides sp. JS614 4598035 YP_925086.1 CDS Noca_3901 NC_008699.1 4108348 4108629 R TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; KEGG: pac:PPA1859 30S ribosomal protein S19; 30S ribosomal protein S19 complement(4108348..4108629) Nocardioides sp. JS614 4598036 YP_925087.1 CDS rplB NC_008699.1 4108645 4109481 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(4108645..4109481) Nocardioides sp. JS614 4598037 YP_925088.1 CDS rplW NC_008699.1 4109513 4109818 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(4109513..4109818) Nocardioides sp. JS614 4598038 YP_925089.1 CDS Noca_3904 NC_008699.1 4109815 4110594 R PFAM: ribosomal protein L4/L1e; KEGG: fal:FRAAL1082 50S ribosomal protein L4; 50S ribosomal protein L4P complement(4109815..4110594) Nocardioides sp. JS614 4598039 YP_925090.1 CDS rplC NC_008699.1 4110597 4111268 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(4110597..4111268) Nocardioides sp. JS614 4598040 YP_925091.1 CDS rpsJ NC_008699.1 4111279 4111587 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(4111279..4111587) Nocardioides sp. JS614 4598041 YP_925092.1 CDS Noca_3907 NC_008699.1 4112019 4113107 D KEGG: mtc:MT3791 hypothetical protein; hypothetical protein 4112019..4113107 Nocardioides sp. JS614 4598042 YP_925093.1 CDS Noca_3908 NC_008699.1 4113104 4113727 D KEGG: sco:SCO3016 integral membrane protein; integral membrane protein 4113104..4113727 Nocardioides sp. JS614 4598043 YP_925094.1 CDS Noca_3909 NC_008699.1 4113724 4114839 D KEGG: sco:SCO3017 secreted protein; secreted protein 4113724..4114839 Nocardioides sp. JS614 4598044 YP_925095.1 CDS Noca_3910 NC_008699.1 4114836 4115834 D PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: sco:SCO3018 putative regulatory protein; ATPase 4114836..4115834 Nocardioides sp. JS614 4598045 YP_925096.1 CDS Noca_3911 NC_008699.1 4115845 4117137 D PFAM: protein of unknown function DUF58; KEGG: sma:SAV5057 hypothetical protein; hypothetical protein 4115845..4117137 Nocardioides sp. JS614 4598046 YP_925097.1 CDS Noca_3912 NC_008699.1 4117257 4118252 R KEGG: sco:SCO3020 integral membrane protein; integral membrane protein complement(4117257..4118252) Nocardioides sp. JS614 4598047 YP_925098.1 CDS Noca_3913 NC_008699.1 4118309 4119118 D PFAM: RDD domain containing protein; KEGG: mpa:MAP0356c hypothetical protein; RDD domain-containing protein 4118309..4119118 Nocardioides sp. JS614 4598048 YP_925099.1 CDS Noca_3914 NC_008699.1 4119473 4120846 D PFAM: extracellular solute-binding protein, family 1; KEGG: tfu:Tfu_2337 ABC-type glucosylglycerol transport system substrate-binding protein; extracellular solute-binding protein 4119473..4120846 Nocardioides sp. JS614 4598049 YP_925100.1 CDS Noca_3915 NC_008699.1 4121034 4121996 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tfu:Tfu_2338 ABC-type glucosylglycerol transport system permease protein; binding-protein-dependent transport systems inner membrane component 4121034..4121996 Nocardioides sp. JS614 4598050 YP_925101.1 CDS Noca_3916 NC_008699.1 4122046 4122975 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tfu:Tfu_2339 ABC-type glucosylglycerol transport system permease protein; binding-protein-dependent transport system inner membrane protein 4122046..4122975 Nocardioides sp. JS614 4598051 YP_925102.1 CDS Noca_3917 NC_008699.1 4123014 4124381 R PFAM: glycoside hydrolase, family 1; KEGG: tth:TT_P0042 beta-glycosidase; beta-glucosidase complement(4123014..4124381) Nocardioides sp. JS614 4598052 YP_925103.1 CDS Noca_3918 NC_008699.1 4124429 4125484 D PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: fra:Francci3_2164 transcriptional regulator, LacI family; LacI family transcriptional regulator 4124429..4125484 Nocardioides sp. JS614 4598053 YP_925104.1 CDS Noca_3919 NC_008699.1 4125444 4126190 R KEGG: pac:PPA1808 conserved methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: putative methyltransferase; tRNA (guanine-N(7)-)-methyltransferase complement(4125444..4126190) Nocardioides sp. JS614 4598054 YP_925105.1 CDS Noca_3920 NC_008699.1 4126353 4126838 D PFAM: transcription activator, effector binding; KEGG: cte:CT0179 hypothetical protein; transcription activator, effector binding 4126353..4126838 Nocardioides sp. JS614 4598055 YP_925106.1 CDS Noca_3921 NC_008699.1 4126835 4128187 D PFAM: aminotransferase class-III; KEGG: pae:PA5523 glutamate-1-semialdehyde 2,1-aminomutase, putative; aminotransferase 4126835..4128187 Nocardioides sp. JS614 4598056 YP_925107.1 CDS Noca_3922 NC_008699.1 4128474 4129667 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(4128474..4129667) Nocardioides sp. JS614 4598057 YP_925108.1 CDS Noca_3923 NC_008699.1 4129750 4131861 R TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; elongation factor G, domain IV; KEGG: fal:FRAAL1078 protein chain elongation factor EF-G, GTP-binding; translation elongation factor 2 (EF-2/EF-G) complement(4129750..4131861) Nocardioides sp. JS614 4598058 YP_925109.1 CDS Noca_3924 NC_008699.1 4131947 4132417 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(4131947..4132417) Nocardioides sp. JS614 4598059 YP_925110.1 CDS rpsL NC_008699.1 4132419 4132793 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 complement(4132419..4132793) Nocardioides sp. JS614 4598060 YP_925111.1 CDS Noca_3926 NC_008699.1 4132924 4134297 R PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1; KEGG: bxe:Bxe_B2022 major facilitator superfamily (MFS) multidrug efflux pump; major facilitator transporter complement(4132924..4134297) Nocardioides sp. JS614 4598061 YP_925112.1 CDS Noca_3927 NC_008699.1 4134321 4134791 R PFAM: regulatory protein, MarR; KEGG: fra:Francci3_0086 transcriptional regulator, MarR family; regulatory protein MarR complement(4134321..4134791) Nocardioides sp. JS614 4598062 YP_925113.1 CDS Noca_3928 NC_008699.1 4134883 4136358 R PFAM: Xanthine/uracil/vitamin C permease; KEGG: sma:SAV6386 putative hypoxanthine/guanine permease; xanthine/uracil/vitamin C permease complement(4134883..4136358) Nocardioides sp. JS614 4598063 YP_925114.1 CDS Noca_3929 NC_008699.1 4136461 4136697 D KEGG: sma:SAV3898 integral membrane protein; integral membrane protein 4136461..4136697 Nocardioides sp. JS614 4598064 YP_925115.1 CDS Noca_3930 NC_008699.1 4136827 4137621 R KEGG: fal:FRAAL6731 hypothetical protein; hypothetical protein complement(4136827..4137621) Nocardioides sp. JS614 4598065 YP_925116.1 CDS Noca_3931 NC_008699.1 4137663 4139012 D PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO4329 integral membrane protein; major facilitator transporter 4137663..4139012 Nocardioides sp. JS614 4598066 YP_925117.1 CDS Noca_3932 NC_008699.1 4139022 4139417 R PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: pac:PPA0477 cold shock protein; cold-shock DNA-binding protein family protein complement(4139022..4139417) Nocardioides sp. JS614 4598067 YP_925118.1 CDS Noca_3933 NC_008699.1 4139472 4140890 R PFAM: ExsB family protein; Haloacid dehalogenase domain protein hydrolase; PP-loop domain protein; KEGG: ade:Adeh_1542 hypothetical protein; hydrolase complement(4139472..4140890) Nocardioides sp. JS614 4598068 YP_925119.1 CDS Noca_3935 NC_008699.1 4143086 4143307 R KEGG: mes:Meso_0710 hypothetical protein; hypothetical protein complement(4143086..4143307) Nocardioides sp. JS614 4598070 YP_925120.1 CDS Noca_3936 NC_008699.1 4143392 4144606 R KEGG: sma:SAV5466 hypothetical protein; hypothetical protein complement(4143392..4144606) Nocardioides sp. JS614 4598071 YP_925121.1 CDS Noca_3937 NC_008699.1 4144769 4146388 R activates fatty acids by binding to coenzyme A; AMP-binding domain-containing protein complement(4144769..4146388) Nocardioides sp. JS614 4598072 YP_925122.1 CDS Noca_3938 NC_008699.1 4146439 4146849 R KEGG: bja:blr0750 hypothetical protein; hypothetical protein complement(4146439..4146849) Nocardioides sp. JS614 4598073 YP_925123.1 CDS Noca_3939 NC_008699.1 4147148 4149625 R PFAM: peptidase M6, immune inhibitor A; KEGG: ade:Adeh_0322 peptidase M6, immune inhibitor A; peptidase M6, immune inhibitor A complement(4147148..4149625) Nocardioides sp. JS614 4598074 YP_925124.1 CDS Noca_3940 NC_008699.1 4149699 4150748 R PFAM: RDD domain containing protein; KEGG: lxx:Lxx12090 hypothetical protein; RDD domain-containing protein complement(4149699..4150748) Nocardioides sp. JS614 4598075 YP_925125.1 CDS Noca_3941 NC_008699.1 4150745 4151794 R PFAM: Forkhead-associated protein; KEGG: lxx:Lxx04220 hypothetical protein; forkhead-associated protein complement(4150745..4151794) Nocardioides sp. JS614 4598076 YP_925126.1 CDS Noca_3942 NC_008699.1 4151791 4152633 R PFAM: protein phosphatase 2C domain protein; KEGG: lxx:Lxx12030 protein phosphatase; protein phosphatase 2C domain-containing protein complement(4151791..4152633) Nocardioides sp. JS614 4598077 YP_925127.1 CDS Noca_3943 NC_008699.1 4152736 4153884 R PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: sco:SCO1294 cystathionine gamma-synthase; cystathionine gamma-synthase complement(4152736..4153884) Nocardioides sp. JS614 4598078 YP_925128.1 CDS Noca_3944 NC_008699.1 4154003 4154509 D PFAM: regulatory protein, AsnC/Lrp family; KEGG: rha:RHA1_ro07274 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 4154003..4154509 Nocardioides sp. JS614 4598079 YP_925129.1 CDS Noca_3945 NC_008699.1 4154606 4156882 D KEGG: sma:SAV3911 hypothetical protein; hypothetical protein 4154606..4156882 Nocardioides sp. JS614 4598080 YP_925130.1 CDS Noca_3946 NC_008699.1 4156892 4157419 D PFAM: protein of unknown function DUF1470; KEGG: sma:SAV2986 hypothetical protein; hypothetical protein 4156892..4157419 Nocardioides sp. JS614 4598081 YP_925131.1 CDS Noca_3947 NC_008699.1 4157563 4159203 D PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sma:SAV3912 ATP-dependent DNA helicase; helicase domain-containing protein 4157563..4159203 Nocardioides sp. JS614 4598082 YP_925132.1 CDS Noca_3948 NC_008699.1 4159443 4160378 D PFAM: peptidase M23B; KEGG: sco:SCO4108 probable peptidase; peptidase M23B 4159443..4160378 Nocardioides sp. JS614 4598083 YP_925133.1 CDS Noca_3949 NC_008699.1 4161334 4162689 D catalyzes the formation of L-tryptophan from indole and L-serine; tryptophan synthase subunit beta 4161334..4162689 Nocardioides sp. JS614 4598084 YP_925134.1 CDS Noca_3950 NC_008699.1 4162805 4165528 R KEGG: sma:SAV2604 secreted protein; secreted protein complement(4162805..4165528) Nocardioides sp. JS614 4598085 YP_925135.1 CDS Noca_3951 NC_008699.1 4165693 4166886 D catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 4165693..4166886 Nocardioides sp. JS614 4598086 YP_925136.1 CDS Noca_3952 NC_008699.1 4167070 4167939 D KEGG: mmc:Mmcs_4212 hypothetical protein; hypothetical protein 4167070..4167939 Nocardioides sp. JS614 4598087 YP_925137.1 CDS Noca_3953 NC_008699.1 4167996 4169258 D hypothetical protein 4167996..4169258 Nocardioides sp. JS614 4598088 YP_925138.1 CDS Noca_3954 NC_008699.1 4169255 4169629 R PFAM: nuclear transport factor 2; KEGG: rha:RHA1_ro03609 steroid delta-isomerase; nuclear transport factor 2 complement(4169255..4169629) Nocardioides sp. JS614 4598089 YP_925139.1 CDS Noca_3955 NC_008699.1 4169709 4170314 D KEGG: sma:SAV3919 hypothetical protein; hypothetical protein 4169709..4170314 Nocardioides sp. JS614 4598090 YP_925140.1 CDS Noca_3956 NC_008699.1 4170355 4170615 R KEGG: sco:SCO4310 hypothetical protein; hypothetical protein complement(4170355..4170615) Nocardioides sp. JS614 4598091 YP_925141.1 CDS Noca_3957 NC_008699.1 4170612 4171355 R PFAM: CutC family protein; KEGG: pac:PPA0471 putative copper homeostasis protein CutC; CutC family protein complement(4170612..4171355) Nocardioides sp. JS614 4598092 YP_925142.1 CDS Noca_3958 NC_008699.1 4171418 4171774 D KEGG: sma:SAV3922 hypothetical protein; hypothetical protein 4171418..4171774 Nocardioides sp. JS614 4598093 YP_925143.1 CDS Noca_3959 NC_008699.1 4171956 4172615 R PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: pac:PPA0676 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(4171956..4172615) Nocardioides sp. JS614 4598094 YP_925144.1 CDS Noca_3960 NC_008699.1 4172778 4175315 R PFAM: protein of unknown function DUF214; KEGG: fal:FRAAL2863 putative ABC transport system integral membrane protein; hypothetical protein complement(4172778..4175315) Nocardioides sp. JS614 4598095 YP_925145.1 CDS Noca_3961 NC_008699.1 4175496 4176263 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO3089 putative ABC transporter ATP-binding protein; ABC transporter-like protein complement(4175496..4176263) Nocardioides sp. JS614 4598096 YP_925146.1 CDS Noca_3962 NC_008699.1 4176400 4177014 D KEGG: sma:SAV1131 alkylated DNA repair protein; DNA-N1-methyladenine dioxygenase 4176400..4177014 Nocardioides sp. JS614 4598097 YP_925147.1 CDS Noca_3963 NC_008699.1 4177092 4177760 D PFAM: methyltransferase small; KEGG: mxa:MXAN_4908 putative protein methyltransferase HemK; methyltransferase small 4177092..4177760 Nocardioides sp. JS614 4598098 YP_925148.1 CDS Noca_3964 NC_008699.1 4178023 4178991 R KEGG: sma:SAV7196 hypothetical protein; hypothetical protein complement(4178023..4178991) Nocardioides sp. JS614 4598099 YP_925149.1 CDS Noca_3965 NC_008699.1 4179205 4179768 R PFAM: LemA family protein; KEGG: mmc:Mmcs_2382 LemA; LemA family protein complement(4179205..4179768) Nocardioides sp. JS614 4598100 YP_925150.1 CDS Noca_3966 NC_008699.1 4179789 4183016 D PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV4106 hypothetical protein; major facilitator transporter 4179789..4183016 Nocardioides sp. JS614 4598101 YP_925151.1 CDS Noca_3967 NC_008699.1 4183079 4183819 R PFAM: carbon monoxide dehydrogenase subunit G; KEGG: rxy:Rxyl_0120 carbon monoxide dehydrogenase subunit G; carbon monoxide dehydrogenase subunit G complement(4183079..4183819) Nocardioides sp. JS614 4598102 YP_925152.1 CDS Noca_3968 NC_008699.1 4183826 4184680 R PFAM: molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: rha:RHA1_ro04975 carbon monoxide dehydrogenase medium subunit; carbon monoxide dehydrogenase, medium subunit complement(4183826..4184680) Nocardioides sp. JS614 4598103 YP_925153.1 CDS Noca_3969 NC_008699.1 4184733 4187240 R PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: rha:RHA1_ro04976 carbon monoxide dehydrogenase large subunit; xanthine dehydrogenase, molybdenum binding subunit apoprotein complement(4184733..4187240) Nocardioides sp. JS614 4598104 YP_925154.1 CDS Noca_3970 NC_008699.1 4187237 4187707 R PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rha:RHA1_ro04977 carbon monoxide dehydrogenase small subunit (ferredoxin); 2Fe-2S iron-sulfur cluster binding domain-containing protein complement(4187237..4187707) Nocardioides sp. JS614 4598105 YP_925155.1 CDS Noca_3971 NC_008699.1 4187894 4189129 R PFAM: transcriptional regulator domain protein; KEGG: nfa:nfa41070 hypothetical protein; transcriptional regulator domain-containing protein complement(4187894..4189129) Nocardioides sp. JS614 4598106 YP_925156.1 CDS Noca_3972 NC_008699.1 4189469 4192450 D PFAM: PKD domain containing protein; KEGG: sde:Sde_3982 protein of unknown function DUF37; PKD domain-containing protein 4189469..4192450 Nocardioides sp. JS614 4598107 YP_925157.1 CDS Noca_3973 NC_008699.1 4192436 4193632 R PFAM: protein of unknown function DUF182; KEGG: mmc:Mmcs_0488 protein of unknown function DUF182; hypothetical protein complement(4192436..4193632) Nocardioides sp. JS614 4598108 YP_925158.1 CDS Noca_3974 NC_008699.1 4193625 4194737 R PFAM: VWA containing CoxE family protein; SMART: von Willebrand factor, type A; KEGG: rha:RHA1_ro04978 hypothetical protein; VWA containing CoxE family protein complement(4193625..4194737) Nocardioides sp. JS614 4598109 YP_925159.1 CDS Noca_3975 NC_008699.1 4194937 4195821 R PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rha:RHA1_ro04979 probable ATPase, MoxR family; ATPase complement(4194937..4195821) Nocardioides sp. JS614 4598110 YP_925160.1 CDS Noca_3976 NC_008699.1 4195870 4196427 R KEGG: rha:RHA1_ro04499 hypothetical protein; hypothetical protein complement(4195870..4196427) Nocardioides sp. JS614 4598111 YP_925161.1 CDS Noca_3977 NC_008699.1 4196471 4197091 R hypothetical protein complement(4196471..4197091) Nocardioides sp. JS614 4598112 YP_925162.1 CDS Noca_3978 NC_008699.1 4197088 4197612 R PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: cdi:DIP0880 putative RNA polymerase sigma factor; sigma-70 factor complement(4197088..4197612) Nocardioides sp. JS614 4598113 YP_925163.1 CDS Noca_3979 NC_008699.1 4197736 4198794 D PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: rfr:Rfer_4140 C4-dicarboxylate transporter/malic acid transport protein; C4-dicarboxylate transporter/malic acid transport protein 4197736..4198794 Nocardioides sp. JS614 4598114 YP_925164.1 CDS Noca_3980 NC_008699.1 4198861 4199700 R PFAM: Hemerythrin HHE cation binding domain protein; KEGG: pac:PPA0240 hypothetical protein; hemerythrin HHE cation binding domain-containing protein complement(4198861..4199700) Nocardioides sp. JS614 4598115 YP_925165.1 CDS Noca_3981 NC_008699.1 4199794 4200489 D PFAM: LexA DNA-binding domain protein; KEGG: mpa:MAP2725c hypothetical protein; transcriptional regulator 4199794..4200489 Nocardioides sp. JS614 4598116 YP_925166.1 CDS groEL NC_008699.1 4200741 4202366 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL complement(4200741..4202366) Nocardioides sp. JS614 4598117 YP_925167.1 CDS Noca_3983 NC_008699.1 4202745 4203617 R PFAM: protein of unknown function DUF201; KEGG: pat:Patl_0408 hypothetical protein; hypothetical protein complement(4202745..4203617) Nocardioides sp. JS614 4598118 YP_925168.1 CDS Noca_3984 NC_008699.1 4203696 4204715 R PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: tfu:Tfu_0938 regulatory protein, LacI; LacI family transcriptional regulator complement(4203696..4204715) Nocardioides sp. JS614 4598119 YP_925169.1 CDS Noca_3985 NC_008699.1 4204968 4205864 R PFAM: lipolytic enzyme, G-D-S-L family; KEGG: sco:SCO3078 secreted protein; GDSL family lipase complement(4204968..4205864) Nocardioides sp. JS614 4598120 YP_925170.1 CDS Noca_3986 NC_008699.1 4205937 4206218 R PFAM: thiamineS protein; KEGG: tfu:Tfu_0227 hypothetical protein; sulfur transfer protein ThiS complement(4205937..4206218) Nocardioides sp. JS614 4598121 YP_925171.1 CDS Noca_3987 NC_008699.1 4206245 4207519 R catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase complement(4206245..4207519) Nocardioides sp. JS614 4598122 YP_925172.1 CDS Noca_3988 NC_008699.1 4207766 4210075 R KEGG: nfa:nfa56180 putative ATP-dependent protease; TIGRFAM: ATP-dependent protease La; PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: peptidase S16, lon domain protein; AAA ATPase; ATP-dependent protease La complement(4207766..4210075) Nocardioides sp. JS614 4598123 YP_925173.1 CDS Noca_3989 NC_008699.1 4210257 4211102 R TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase; KEGG: sma:SAV3937 trehalose-6-phosphatase; HAD family hydrolase complement(4210257..4211102) Nocardioides sp. JS614 4598124 YP_925174.1 CDS Noca_3990 NC_008699.1 4211154 4211645 R KEGG: rha:RHA1_ro02174 possible glycoprotein; hypothetical protein complement(4211154..4211645) Nocardioides sp. JS614 4598125 YP_925175.1 CDS Noca_3991 NC_008699.1 4211649 4211942 R KEGG: mpa:MAP3919 hypothetical protein; hypothetical protein complement(4211649..4211942) Nocardioides sp. JS614 4598126 YP_925176.1 CDS Noca_3992 NC_008699.1 4212060 4213070 D PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: sru:SRU_0347 oxidoreductase family, NAD-binding Rossmann fold domain protein; oxidoreductase domain-containing protein 4212060..4213070 Nocardioides sp. JS614 4598127 YP_925177.1 CDS Noca_3993 NC_008699.1 4213095 4213616 R KEGG: sco:SCO4598 two-component system sensor kinase; hypothetical protein complement(4213095..4213616) Nocardioides sp. JS614 4598128 YP_925178.1 CDS Noca_3994 NC_008699.1 4213722 4215170 D PFAM: glycosyl transferase, family 20; KEGG: pac:PPA0961 alpha,alpha-trehalose-phosphate synthase; alpha,alpha-trehalose-phosphate synthase 4213722..4215170 Nocardioides sp. JS614 4598129 YP_925179.1 CDS Noca_3995 NC_008699.1 4215244 4216641 D PFAM: alpha/beta hydrolase fold; KEGG: rha:RHA1_ro04396 probable poly-beta-hydroxybutyrate polymerase; alpha/beta hydrolase fold protein 4215244..4216641 Nocardioides sp. JS614 4598130 YP_925180.1 CDS Noca_3996 NC_008699.1 4216738 4218069 D PFAM: major facilitator superfamily MFS_1; KEGG: syg:sync_2195 putative GPH family sugar transporter; major facilitator transporter 4216738..4218069 Nocardioides sp. JS614 4598131 YP_925181.1 CDS Noca_3997 NC_008699.1 4218066 4219616 D PFAM: aminotransferase, class V; Pyridoxal-dependent decarboxylase; KEGG: sth:STH1274 putative sphingosine-1-phosphate lyase; pyridoxal-dependent decarboxylase 4218066..4219616 Nocardioides sp. JS614 4598132 YP_925182.1 CDS Noca_3998 NC_008699.1 4219565 4220491 R PFAM: PfkB domain protein; KEGG: rde:RD1_3878 sugar kinase, putative; ribokinase-like domain-containing protein complement(4219565..4220491) Nocardioides sp. JS614 4598133 YP_925183.1 CDS Noca_3999 NC_008699.1 4220488 4221264 R PFAM: regulatory protein, TetR; KEGG: tfu:Tfu_0143 similar to transcriptional regulator; regulatory protein TetR complement(4220488..4221264) Nocardioides sp. JS614 4598134 YP_925184.1 CDS Noca_4000 NC_008699.1 4221278 4222777 D PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: nfa:nfa30780 putative oxidoreductase; amine oxidase 4221278..4222777 Nocardioides sp. JS614 4598135 YP_925185.1 CDS Noca_4001 NC_008699.1 4222714 4223904 R KEGG: ade:Adeh_1681 PE-PGRS family protein; PE-PGRS family protein complement(4222714..4223904) Nocardioides sp. JS614 4598136 YP_925186.1 CDS Noca_4002 NC_008699.1 4223973 4224665 D Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 4223973..4224665 Nocardioides sp. JS614 4598137 YP_925187.1 CDS Noca_4003 NC_008699.1 4224694 4225470 D PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: rha:RHA1_ro01018 hypothetical protein; extradiol ring-cleavage dioxygenase III subunit B 4224694..4225470 Nocardioides sp. JS614 4598138 YP_925188.1 CDS gabD2 NC_008699.1 4225593 4227152 R NADP-dependent semialdehyde dehydrogenase; part of alternative pathway from alpha-ketoglutarate to succinate; succinate-semialdehyde dehydrogenase complement(4225593..4227152) Nocardioides sp. JS614 4598139 YP_925189.1 CDS Noca_4005 NC_008699.1 4227158 4228795 R PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: dra:DR0965 GMC oxidoreductase; glucose-methanol-choline oxidoreductase complement(4227158..4228795) Nocardioides sp. JS614 4598140 YP_925190.1 CDS Noca_4006 NC_008699.1 4228910 4229791 D catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase 4228910..4229791 Nocardioides sp. JS614 4598141 YP_925191.1 CDS Noca_4007 NC_008699.1 4229849 4230598 R KEGG: bta:540183 similar to tyrosylprotein sulfotransferase 2 Pfam: DUF470 Sulfotransfer_1; hypothetical protein complement(4229849..4230598) Nocardioides sp. JS614 4598142 YP_925192.1 CDS Noca_4008 NC_008699.1 4230841 4231434 D PFAM: protein of unknown function DUF305; KEGG: nfa:nfa38100 hypothetical protein; hypothetical protein 4230841..4231434 Nocardioides sp. JS614 4598143 YP_925193.1 CDS Noca_4009 NC_008699.1 4231597 4232319 R PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: mmc:Mmcs_3395 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(4231597..4232319) Nocardioides sp. JS614 4598145 YP_925194.1 CDS Noca_4010 NC_008699.1 4232365 4232811 R KEGG: mmc:Mmcs_1152 hypothetical protein; hypothetical protein complement(4232365..4232811) Nocardioides sp. JS614 4598146 YP_925195.1 CDS Noca_4011 NC_008699.1 4232877 4234082 D KEGG: pac:PPA0386 hypothetical protein; hypothetical protein 4232877..4234082 Nocardioides sp. JS614 4598147 YP_925196.1 CDS Noca_4012 NC_008699.1 4234209 4235507 D PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: mtc:MT3905 IS1557, transposase; transposase, IS204/IS1001/IS1096/IS1165 family protein 4234209..4235507 Nocardioides sp. JS614 4598148 YP_925197.1 CDS Noca_4013 NC_008699.1 4235741 4236328 R KEGG: sma:SAV6531 hypothetical protein; hypothetical protein complement(4235741..4236328) Nocardioides sp. JS614 4598149 YP_925198.1 CDS Noca_4014 NC_008699.1 4236331 4238016 R KEGG: rno:315071 procollagen, type XXII, alpha 1 (predicted); hypothetical protein complement(4236331..4238016) Nocardioides sp. JS614 4598150 YP_925199.1 CDS Noca_4015 NC_008699.1 4238013 4238720 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_1835 ABC transporter related; ABC transporter-like protein complement(4238013..4238720) Nocardioides sp. JS614 4598151 YP_925200.1 CDS Noca_4016 NC_008699.1 4238717 4239535 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fal:FRAAL2623 hypothetical protein; putative membrane protein involved in branched-chain amino acid transport, ATP-binding; ABC transporter-like protein complement(4238717..4239535) Nocardioides sp. JS614 4598152 YP_925201.1 CDS Noca_4017 NC_008699.1 4239525 4241618 R PFAM: inner-membrane translocator; KEGG: fal:FRAAL3359 putative sulfate-transporting ATPase; inner-membrane translocator complement(4239525..4241618) Nocardioides sp. JS614 4598153 YP_925202.1 CDS Noca_4018 NC_008699.1 4242081 4243526 R KEGG: rme:Rmet_5877 extracellular ligand-binding receptor; ABC-type branched-chain amino acid transport systems periplasmic component-like complement(4242081..4243526) Nocardioides sp. JS614 4598154 YP_925203.1 CDS Noca_4019 NC_008699.1 4243634 4245076 R PFAM: metallophosphoesterase; KEGG: swo:Swol_2226 hypothetical protein; metallophosphoesterase complement(4243634..4245076) Nocardioides sp. JS614 4598155 YP_925204.1 CDS Noca_4020 NC_008699.1 4245178 4246122 R TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; KEGG: mmc:Mmcs_4736 RNA methyltransferase TrmH, group 3; RNA methyltransferase complement(4245178..4246122) Nocardioides sp. JS614 4598156 YP_925205.1 CDS cysS NC_008699.1 4246125 4247540 R catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase complement(4246125..4247540) Nocardioides sp. JS614 4598157 YP_925206.1 CDS Noca_4022 NC_008699.1 4247563 4248759 D KEGG: sma:SAV6915 hypothetical protein; hypothetical protein 4247563..4248759 Nocardioides sp. JS614 4596536 YP_925207.1 CDS Noca_4023 NC_008699.1 4248915 4250480 R PFAM: oxidoreductase, molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: rha:RHA1_ro01563 probable sufite oxidase; oxidoreductase complement(4248915..4250480) Nocardioides sp. JS614 4596537 YP_925208.1 CDS ispF NC_008699.1 4250519 4251013 D catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4250519..4251013 Nocardioides sp. JS614 4596538 YP_925209.1 CDS Noca_4025 NC_008699.1 4250985 4251368 R TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: fra:Francci3_0795 nitrite reductase (NAD(P)H) large subunit, NirD; nitrite reductase (NAD(P)H) small subunit complement(4250985..4251368) Nocardioides sp. JS614 4596539 YP_925210.1 CDS Noca_4026 NC_008699.1 4251590 4251916 R hypothetical protein complement(4251590..4251916) Nocardioides sp. JS614 4596540 YP_925211.1 CDS Noca_4027 NC_008699.1 4251903 4252526 R KEGG: cya:CYA_0495 hypothetical protein; hypothetical protein complement(4251903..4252526) Nocardioides sp. JS614 4596541 YP_925212.1 CDS Noca_4028 NC_008699.1 4252608 4253459 R TIGRFAM: ethanolamine utilization protein EutJ family protein; PFAM: cell division protein FtsA; KEGG: dde:Dde_3275 ethanolamine utilization protein EutJ; ethanolamine utilization protein EutJ family protein complement(4252608..4253459) Nocardioides sp. JS614 4596542 YP_925213.1 CDS Noca_4029 NC_008699.1 4253459 4254022 R PFAM: protein of unknown function DUF861, cupin_3; Ethanolamine utilisation EutQ family protein; KEGG: ecj:JW2444 conserved hypothetical protein; ethanolamine utilisation EutQ family protein complement(4253459..4254022) Nocardioides sp. JS614 4596543 YP_925214.1 CDS Noca_4030 NC_008699.1 4254057 4254371 R PFAM: microcompartments protein; KEGG: dsy:DSY4991 hypothetical protein; microcompartments protein complement(4254057..4254371) Nocardioides sp. JS614 4596544 YP_925215.1 CDS Noca_4031 NC_008699.1 4254499 4256034 R KEGG: lin:lin1143 hypothetical protein; acetaldehyde dehydrogenase complement(4254499..4256034) Nocardioides sp. JS614 4596545 YP_925216.1 CDS Noca_4032 NC_008699.1 4256034 4256690 R PFAM: microcompartments protein; KEGG: dsy:DSY4965 hypothetical protein; microcompartments protein complement(4256034..4256690) Nocardioides sp. JS614 4596546 YP_925217.1 CDS Noca_4033 NC_008699.1 4256690 4257712 R PFAM: Ethanolamine ammonia-lyase light chain; KEGG: dsy:DSY4961 hypothetical protein; ethanolamine ammonia-lyase light chain complement(4256690..4257712) Nocardioides sp. JS614 4596547 YP_925218.1 CDS Noca_4034 NC_008699.1 4257727 4259094 R PFAM: Ethanolamine ammonia lyase large subunit; KEGG: ctc:CTC02176 ethanolamine ammonia-lyase heavy chain; ethanolamine ammonia-lyase heavy chain complement(4257727..4259094) Nocardioides sp. JS614 4596548 YP_925219.1 CDS eutA NC_008699.1 4259125 4260561 R ethanolamine utilization protein EutA; reactivating factor for ethanolamine ammonia lyase complement(4259125..4260561) Nocardioides sp. JS614 4596549 YP_925220.1 CDS Noca_4036 NC_008699.1 4260568 4260858 R PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: rba:RB2581 probable ethanolamine utilization protein EutN; ethanolamine utilization protein EutN/carboxysome structural protein Ccml complement(4260568..4260858) Nocardioides sp. JS614 4596550 YP_925221.1 CDS Noca_4037 NC_008699.1 4260860 4262320 R TIGRFAM: ethanolamine transproter; PFAM: amino acid permease-associated region; KEGG: rxy:Rxyl_3197 ethanolamine permease; ethanolamine transporter complement(4260860..4262320) Nocardioides sp. JS614 4596551 YP_925222.1 CDS Noca_4038 NC_008699.1 4262576 4263247 D PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: mta:Moth_2487 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase 4262576..4263247 Nocardioides sp. JS614 4596552 YP_925223.1 CDS Noca_4039 NC_008699.1 4263204 4263806 R KEGG: fra:Francci3_4254 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; hypothetical protein complement(4263204..4263806) Nocardioides sp. JS614 4596553 YP_925224.1 CDS Noca_4040 NC_008699.1 4263890 4264375 R PFAM: transcription factor CarD; KEGG: pac:PPA0357 putative transcriptional regulator; CarD family transcriptional regulator complement(4263890..4264375) Nocardioides sp. JS614 4596554 YP_925225.1 CDS Noca_4041 NC_008699.1 4264618 4265490 D KEGG: fal:FRAAL6457 putative integral membrane protein; hypothetical protein 4264618..4265490 Nocardioides sp. JS614 4596555 YP_925226.1 CDS Noca_4042 NC_008699.1 4265585 4266127 D hypothetical protein 4265585..4266127 Nocardioides sp. JS614 4596556 YP_925227.1 CDS gpmA NC_008699.1 4266159 4266902 D 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 4266159..4266902 Nocardioides sp. JS614 4596557 YP_925228.1 CDS Noca_4044 NC_008699.1 4267419 4268135 R TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: pac:PPA0361 putative phosphate transport system protein; phosphate uptake regulator PhoU complement(4267419..4268135) Nocardioides sp. JS614 4596558 YP_925229.1 CDS Noca_4045 NC_008699.1 4268193 4269347 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: sma:SAV3973 putative two-component system sensor kinase; ATPase domain-containing protein 4268193..4269347 Nocardioides sp. JS614 4596559 YP_925230.1 CDS Noca_4046 NC_008699.1 4269344 4270021 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sco:SCO4230 putative response regulator; response regulator receiver 4269344..4270021 Nocardioides sp. JS614 4596560 YP_925231.1 CDS Noca_4047 NC_008699.1 4270214 4271152 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: sco:SCO1704 integral membrane conserved hypothetical protein; hypothetical protein 4270214..4271152 Nocardioides sp. JS614 4596561 YP_925232.1 CDS Noca_4048 NC_008699.1 4271226 4272896 D PFAM: ABC-1 domain protein; KEGG: xac:XAC0422 ABC transporter substrate binding protein; hypothetical protein 4271226..4272896 Nocardioides sp. JS614 4596562 YP_925233.1 CDS Noca_4049 NC_008699.1 4272881 4273480 R KEGG: sco:SCO4205 hypothetical protein; hypothetical protein complement(4272881..4273480) Nocardioides sp. JS614 4596563 YP_925234.1 CDS Noca_4050 NC_008699.1 4273477 4274853 R PFAM: glycosyl transferase, group 1; KEGG: sma:SAV4006 glycosyl transferase; group 1 glycosyl transferase complement(4273477..4274853) Nocardioides sp. JS614 4596564 YP_925235.1 CDS Noca_4051 NC_008699.1 4274843 4275226 R hypothetical protein complement(4274843..4275226) Nocardioides sp. JS614 4596565 YP_925236.1 CDS Noca_4052 NC_008699.1 4275325 4276071 D PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sco:SCO3298 putative oxidoreductase; short-chain dehydrogenase/reductase SDR 4275325..4276071 Nocardioides sp. JS614 4596566 YP_925237.1 CDS Noca_4053 NC_008699.1 4276228 4277028 R hypothetical protein complement(4276228..4277028) Nocardioides sp. JS614 4596567 YP_925238.1 CDS Noca_4054 NC_008699.1 4277025 4277609 R hypothetical protein complement(4277025..4277609) Nocardioides sp. JS614 4596568 YP_925239.1 CDS Noca_4055 NC_008699.1 4277676 4278365 D TIGRFAM: aspartate racemase; PFAM: Asp/Glu racemase; KEGG: ccr:CC3278 aspartate racemase; aspartate racemase 4277676..4278365 Nocardioides sp. JS614 4596569 YP_925240.1 CDS Noca_4056 NC_008699.1 4278426 4279718 R PFAM: peptidase M4, thermolysin; Peptidase M4, thermolysin; KEGG: bbr:BB2878 putative metalloprotease; peptidase M4, thermolysin complement(4278426..4279718) Nocardioides sp. JS614 4596570 YP_925241.1 CDS Noca_4057 NC_008699.1 4279731 4282463 R KEGG: cch:Cag_1235 hypothetical protein; hypothetical protein complement(4279731..4282463) Nocardioides sp. JS614 4596571 YP_925242.1 CDS Noca_4058 NC_008699.1 4282593 4283147 R PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: rha:RHA1_ro05058 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like protein complement(4282593..4283147) Nocardioides sp. JS614 4596572 YP_925243.1 CDS Noca_4059 NC_008699.1 4283200 4284963 R KEGG: cch:Cag_1235 hypothetical protein; hypothetical protein complement(4283200..4284963) Nocardioides sp. JS614 4596573 YP_925244.1 CDS Noca_4060 NC_008699.1 4285072 4286967 D TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: tfu:Tfu_2456 small GTP-binding protein domain:GTP-binding protein TypA; GTP-binding protein TypA 4285072..4286967 Nocardioides sp. JS614 4596574 YP_925245.1 CDS Noca_4061 NC_008699.1 4287204 4288634 D PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sfr:Sfri_3690 flavocytochrome c; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 4287204..4288634 Nocardioides sp. JS614 4596575 YP_925246.1 CDS Noca_4062 NC_008699.1 4288713 4289882 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: sco:SCO3051 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(4288713..4289882) Nocardioides sp. JS614 4596576 YP_925247.1 CDS Noca_4063 NC_008699.1 4289939 4290667 R PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: mta:Moth_2304 GntR-like; GntR family transcriptional regulator complement(4289939..4290667) Nocardioides sp. JS614 4596577 YP_925248.1 CDS Noca_4064 NC_008699.1 4290861 4291382 D PFAM: MaoC domain protein dehydratase; KEGG: pol:Bpro_5294 MaoC-like dehydratase; dehydratase 4290861..4291382 Nocardioides sp. JS614 4596578 YP_925249.1 CDS Noca_4065 NC_008699.1 4291386 4292420 D PFAM: luciferase family protein; KEGG: mmc:Mmcs_3213 luciferase-like protein; luciferase family protein 4291386..4292420 Nocardioides sp. JS614 4596579 YP_925250.1 CDS Noca_4066 NC_008699.1 4292417 4293646 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bxe:Bxe_A4084 putative L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 4292417..4293646 Nocardioides sp. JS614 4596580 YP_925251.1 CDS Noca_4067 NC_008699.1 4293643 4295049 D PFAM: MmgE/PrpD family protein; KEGG: bur:Bcep18194_B1168 MmgE/PrpD family protein; MmgE/PrpD family protein 4293643..4295049 Nocardioides sp. JS614 4596581 YP_925252.1 CDS Noca_4068 NC_008699.1 4295052 4296269 D PFAM: Endoribonuclease L-PSP; KEGG: bbr:BB1154 hypothetical protein; endoribonuclease L-PSP 4295052..4296269 Nocardioides sp. JS614 4596582 YP_925253.1 CDS Noca_4069 NC_008699.1 4296266 4296766 D KEGG: mpa:MAP1460 hypothetical protein; hypothetical protein 4296266..4296766 Nocardioides sp. JS614 4596583 YP_925254.1 CDS Noca_4070 NC_008699.1 4296763 4297206 D PFAM: MaoC domain protein dehydratase; KEGG: deh:cbdb_A489 hypothetical protein; dehydratase 4296763..4297206 Nocardioides sp. JS614 4596584 YP_925255.1 CDS Noca_4071 NC_008699.1 4297203 4298351 D KEGG: pol:Bpro_5279 thiolase; thiolase 4297203..4298351 Nocardioides sp. JS614 4596585 YP_925256.1 CDS Noca_4072 NC_008699.1 4298348 4298776 D PFAM: protein of unknown function DUF35; KEGG: rha:RHA1_ro05826 hypothetical protein; hypothetical protein 4298348..4298776 Nocardioides sp. JS614 4596586 YP_925257.1 CDS Noca_4073 NC_008699.1 4298773 4299933 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: bxe:Bxe_A4085 putative acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 4298773..4299933 Nocardioides sp. JS614 4596587 YP_925258.1 CDS Noca_4074 NC_008699.1 4299933 4300796 D converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase 4299933..4300796 Nocardioides sp. JS614 4596588 YP_925259.1 CDS Noca_4075 NC_008699.1 4300781 4302235 R PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sfr:Sfri_2586 flavocytochrome c; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein complement(4300781..4302235) Nocardioides sp. JS614 4596589 YP_925260.1 CDS Noca_4076 NC_008699.1 4302335 4304494 R KEGG: ade:Adeh_0244 LigA; hypothetical protein complement(4302335..4304494) Nocardioides sp. JS614 4596590 YP_925261.1 CDS Noca_4077 NC_008699.1 4304586 4306061 R PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ctc:CTC00811 fumarate reductase flavoprotein subunit precursor; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein complement(4304586..4306061) Nocardioides sp. JS614 4596591 YP_925262.1 CDS Noca_4078 NC_008699.1 4306058 4306891 R hypothetical protein complement(4306058..4306891) Nocardioides sp. JS614 4596592 YP_925263.1 CDS Noca_4079 NC_008699.1 4306928 4307779 R PFAM: HpcH/HpaI aldolase; KEGG: rxy:Rxyl_0366 citryl-CoA lyase; HpcH/HpaI aldolase complement(4306928..4307779) Nocardioides sp. JS614 4596593 YP_925264.1 CDS Noca_4080 NC_008699.1 4307925 4309310 D PFAM: major facilitator superfamily MFS_1; KEGG: fal:FRAAL0582 putative efflux membrane protein (partial match); major facilitator transporter 4307925..4309310 Nocardioides sp. JS614 4596594 YP_925265.1 CDS Noca_4081 NC_008699.1 4309303 4310211 R PFAM: alpha/beta hydrolase fold; KEGG: hne:HNE_1214 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold protein complement(4309303..4310211) Nocardioides sp. JS614 4596595 YP_925266.1 CDS Noca_4082 NC_008699.1 4310245 4311825 R PFAM: extracellular solute-binding protein, family 5; KEGG: bcl:ABC1605 oligopeptide ABC transporter substrate-binding protein; extracellular solute-binding protein complement(4310245..4311825) Nocardioides sp. JS614 4596596 YP_925267.1 CDS Noca_4083 NC_008699.1 4312060 4313256 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: sco:SCO2032 hypothetical protein; L-carnitine dehydratase/bile acid-inducible protein F 4312060..4313256 Nocardioides sp. JS614 4596597 YP_925268.1 CDS Noca_4084 NC_008699.1 4313314 4314156 D PFAM: cyclase family protein; KEGG: rxy:Rxyl_0367 putative cyclase; cyclase family protein 4313314..4314156 Nocardioides sp. JS614 4596598 YP_925269.1 CDS Noca_4085 NC_008699.1 4314149 4315579 D PFAM: MmgE/PrpD family protein; KEGG: rxy:Rxyl_0368 MmgE/PrpD; MmgE/PrpD family protein 4314149..4315579 Nocardioides sp. JS614 4596599 YP_925270.1 CDS Noca_4086 NC_008699.1 4315576 4317042 D PFAM: amidohydrolase; KEGG: ana:alr5010 D-hydantoinase; amidohydrolase 4315576..4317042 Nocardioides sp. JS614 4596600 YP_925271.1 CDS Noca_4087 NC_008699.1 4317128 4318798 R KEGG: pat:Patl_2766 alpha/beta hydrolase fold; alpha/beta fold family hydrolase/acetyltransferase complement(4317128..4318798) Nocardioides sp. JS614 4596601 YP_925272.1 CDS Noca_4088 NC_008699.1 4318969 4319901 D hypothetical protein 4318969..4319901 Nocardioides sp. JS614 4596602 YP_925273.1 CDS Noca_4089 NC_008699.1 4319898 4320602 D PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sco:SCO2490 dehydrogenase (secreted protein); short-chain dehydrogenase/reductase SDR 4319898..4320602 Nocardioides sp. JS614 4596603 YP_925274.1 CDS Noca_4090 NC_008699.1 4320731 4321807 R KEGG: ttj:TTHA0473 peptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase complement(4320731..4321807) Nocardioides sp. JS614 4596604 YP_925275.1 CDS Noca_4091 NC_008699.1 4321804 4322823 R KEGG: bxe:Bxe_A0185 ABC dipeptide/oligopeptide/nickel transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase complement(4321804..4322823) Nocardioides sp. JS614 4596605 YP_925276.1 CDS Noca_4092 NC_008699.1 4322810 4323850 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC1242 oligopeptide ABC transporter permease; binding-protein-dependent transport system inner membrane protein complement(4322810..4323850) Nocardioides sp. JS614 4596606 YP_925277.1 CDS Noca_4093 NC_008699.1 4323847 4324812 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: psp:PSPPH_2785 ABC-transport protein, inner membrane component; binding-protein-dependent transport systems inner membrane component complement(4323847..4324812) Nocardioides sp. JS614 4596607 YP_925278.1 CDS Noca_4094 NC_008699.1 4325003 4326019 R hypothetical protein complement(4325003..4326019) Nocardioides sp. JS614 4596608 YP_925279.1 CDS Noca_4095 NC_008699.1 4326187 4326996 R PFAM: regulatory proteins, IclR; KEGG: rxy:Rxyl_0364 transcriptional regulator, IclR family; IclR family transcriptional regulator complement(4326187..4326996) Nocardioides sp. JS614 4596609 YP_925280.1 CDS Noca_4096 NC_008699.1 4327298 4328824 D PFAM: AMP-dependent synthetase and ligase; KEGG: rxy:Rxyl_0353 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 4327298..4328824 Nocardioides sp. JS614 4596610 YP_925281.1 CDS Noca_4097 NC_008699.1 4328844 4329575 D KEGG: pat:Patl_3828 hypothetical protein; hypothetical protein 4328844..4329575 Nocardioides sp. JS614 4596611 YP_925282.1 CDS Noca_4098 NC_008699.1 4329606 4330166 R hypothetical protein complement(4329606..4330166) Nocardioides sp. JS614 4596612 YP_925283.1 CDS Noca_4099 NC_008699.1 4330286 4331305 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; KEGG: ava:Ava_4427 zinc-containing alcohol dehydrogenase superfamily; alcohol dehydrogenase 4330286..4331305 Nocardioides sp. JS614 4596613 YP_925284.1 CDS Noca_4100 NC_008699.1 4331326 4332777 R PFAM: amidohydrolase; Amidohydrolase 3; KEGG: mma:MM2279 N-ethylammeline chlorohydrolase; amidohydrolase complement(4331326..4332777) Nocardioides sp. JS614 4596614 YP_925285.1 CDS Noca_4101 NC_008699.1 4332774 4333322 R hypothetical protein complement(4332774..4333322) Nocardioides sp. JS614 4596615 YP_925286.1 CDS Noca_4102 NC_008699.1 4333319 4334068 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mta:Moth_2498 ABC transporter related; ABC transporter-like protein complement(4333319..4334068) Nocardioides sp. JS614 4596616 YP_925287.1 CDS Noca_4103 NC_008699.1 4334065 4335813 R PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: bpe:BP0620 branched-chain amino acid ABC transporter, permease protein; ABC transporter-like protein complement(4334065..4335813) Nocardioides sp. JS614 4596617 YP_925288.1 CDS Noca_4104 NC_008699.1 4335890 4336762 R PFAM: inner-membrane translocator; KEGG: bpa:BPP0593 putative branched-chain amino acid transport system permease protein; inner-membrane translocator complement(4335890..4336762) Nocardioides sp. JS614 4596618 YP_925289.1 CDS Noca_4105 NC_008699.1 4336855 4338078 R PFAM: Extracellular ligand-binding receptor; KEGG: rso:RS01985 probable amino acid-binding periplasmic (pbp) ABC transporter protein; extracellular ligand-binding receptor complement(4336855..4338078) Nocardioides sp. JS614 4596619 YP_925290.1 CDS Noca_4106 NC_008699.1 4338230 4339627 R PFAM: amidohydrolase; KEGG: aor:AO090001000163 atrazine chlorohydrolase/guanine deaminase Pfam: A_deaminase Amidohydro_3 Amidohydro_1; amidohydrolase complement(4338230..4339627) Nocardioides sp. JS614 4596620 YP_925291.1 CDS Noca_4107 NC_008699.1 4340083 4340874 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: gme:Gmet_2224 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase complement(4340083..4340874) Nocardioides sp. JS614 4596621 YP_925292.1 CDS Noca_4108 NC_008699.1 4340894 4341112 R PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: pst:PSPTO_4243 UreA amidolyase-related protein; biotin/lipoyl attachment domain-containing protein complement(4340894..4341112) Nocardioides sp. JS614 4596622 YP_925293.1 CDS Noca_4109 NC_008699.1 4341191 4341643 R PFAM: MaoC domain protein dehydratase; KEGG: tth:TTC0237 dehydrogenase; dehydratase complement(4341191..4341643) Nocardioides sp. JS614 4596623 YP_925294.1 CDS Noca_4110 NC_008699.1 4341650 4342447 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: fal:FRAAL2628 putative enoyl-CoA hydratase/isomerase, involved in phenylacetic acid degradation; short chain enoyl-CoA hydratase complement(4341650..4342447) Nocardioides sp. JS614 4596624 YP_925295.1 CDS Noca_4111 NC_008699.1 4342560 4343195 D PFAM: regulatory protein, TetR; KEGG: rha:RHA1_ro02343 probable transcriptional regulator, TetR family; regulatory protein TetR 4342560..4343195 Nocardioides sp. JS614 4596625 YP_925296.1 CDS Noca_4112 NC_008699.1 4343247 4343972 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_0356 ABC transporter related; ABC transporter-like protein complement(4343247..4343972) Nocardioides sp. JS614 4596626 YP_925297.1 CDS Noca_4113 NC_008699.1 4343969 4344712 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_0111 ABC transporter related; ABC transporter-like protein complement(4343969..4344712) Nocardioides sp. JS614 4596627 YP_925298.1 CDS Noca_4114 NC_008699.1 4344709 4345674 R PFAM: inner-membrane translocator; KEGG: tde:TDE2365 high-affinity branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator complement(4344709..4345674) Nocardioides sp. JS614 4596628 YP_925299.1 CDS Noca_4115 NC_008699.1 4345671 4346534 R PFAM: inner-membrane translocator; KEGG: bpa:BPP0593 putative branched-chain amino acid transport system permease protein; inner-membrane translocator complement(4345671..4346534) Nocardioides sp. JS614 4596629 YP_925300.1 CDS Noca_4116 NC_008699.1 4346531 4348030 R PFAM: AMP-dependent synthetase and ligase; KEGG: rxy:Rxyl_0353 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(4346531..4348030) Nocardioides sp. JS614 4596630 YP_925301.1 CDS Noca_4117 NC_008699.1 4348035 4349210 R PFAM: Extracellular ligand-binding receptor; KEGG: bxe:Bxe_B1023 ABC branched chain amino acid family transporter, periplasmic ligand binding protein; extracellular ligand-binding receptor complement(4348035..4349210) Nocardioides sp. JS614 4596631 YP_925302.1 CDS Noca_4118 NC_008699.1 4349455 4350681 D PFAM: beta-ketoacyl synthase; KEGG: cya:CYA_2873 3-oxoacyl-[acyl-carrier-protein] synthase II; beta-ketoacyl synthase 4349455..4350681 Nocardioides sp. JS614 4596632 YP_925303.1 CDS Noca_4119 NC_008699.1 4350678 4351079 D KEGG: ccr:CC2307 hypothetical protein; hypothetical protein 4350678..4351079 Nocardioides sp. JS614 4596633 YP_925304.1 CDS Noca_4120 NC_008699.1 4351119 4352051 D PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro04654 3-oxoacyl-[acyl-carrier-protein] reductase; short-chain dehydrogenase/reductase SDR 4351119..4352051 Nocardioides sp. JS614 4596634 YP_925305.1 CDS Noca_4121 NC_008699.1 4352098 4353780 D PFAM: AMP-dependent synthetase and ligase; KEGG: tfu:Tfu_1300 DitJ-like CoA ligase (AMP forming), possibly related to diterpenoid metabolism; AMP-dependent synthetase and ligase 4352098..4353780 Nocardioides sp. JS614 4596635 YP_925306.1 CDS Noca_4122 NC_008699.1 4353777 4354622 D PFAM: inner-membrane translocator; KEGG: bbr:BB4292 branched-chain amino acid transport system permease; inner-membrane translocator 4353777..4354622 Nocardioides sp. JS614 4596636 YP_925307.1 CDS Noca_4123 NC_008699.1 4354619 4355677 D PFAM: inner-membrane translocator; KEGG: gsu:GSU1732 branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator 4354619..4355677 Nocardioides sp. JS614 4596637 YP_925308.1 CDS Noca_4124 NC_008699.1 4355674 4356438 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpe:RPE_3782 ABC transporter related; ABC transporter-like protein 4355674..4356438 Nocardioides sp. JS614 4596638 YP_925309.1 CDS Noca_4125 NC_008699.1 4356435 4357142 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO7182 putative branched amino acid transport system ATP-binding protein; ABC transporter-like protein 4356435..4357142 Nocardioides sp. JS614 4596639 YP_925310.1 CDS Noca_4126 NC_008699.1 4357139 4358284 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rha:RHA1_ro08152 probable fatty acid-CoA racemase; L-carnitine dehydratase/bile acid-inducible protein F 4357139..4358284 Nocardioides sp. JS614 4596640 YP_925311.1 CDS Noca_4127 NC_008699.1 4358432 4359634 R PFAM: Extracellular ligand-binding receptor; KEGG: chy:CHY_2238 high affinity branched-chain amino acid ABC transporter, amino acid-binding protein; extracellular ligand-binding receptor complement(4358432..4359634) Nocardioides sp. JS614 4596641 YP_925312.1 CDS Noca_4128 NC_008699.1 4359715 4360773 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: fal:FRAAL3878 putative acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(4359715..4360773) Nocardioides sp. JS614 4596642 YP_925313.1 CDS Noca_4129 NC_008699.1 4360770 4361846 R PFAM: aminoglycoside phosphotransferase; KEGG: rxy:Rxyl_2337 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase complement(4360770..4361846) Nocardioides sp. JS614 4596643 YP_925314.1 CDS Noca_4130 NC_008699.1 4361843 4363156 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: mpa:MAP3122 FadE1_2; acyl-CoA dehydrogenase domain-containing protein complement(4361843..4363156) Nocardioides sp. JS614 4596644 YP_925315.1 CDS Noca_4131 NC_008699.1 4363208 4364356 R KEGG: nfa:nfa22710 putative lipid-transfer protein; putative lipid-transfer protein complement(4363208..4364356) Nocardioides sp. JS614 4596645 YP_925316.1 CDS Noca_4132 NC_008699.1 4364359 4364808 R PFAM: protein of unknown function DUF35; KEGG: mpa:MAP0797 hypothetical protein; hypothetical protein complement(4364359..4364808) Nocardioides sp. JS614 4596646 YP_925317.1 CDS Noca_4133 NC_008699.1 4364838 4365650 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: nfa:nfa25020 putative short chain dehydrogenase; short-chain dehydrogenase/reductase SDR complement(4364838..4365650) Nocardioides sp. JS614 4596647 YP_925318.1 CDS Noca_4134 NC_008699.1 4365647 4366888 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rha:RHA1_ro07066 probable acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(4365647..4366888) Nocardioides sp. JS614 4596648 YP_925319.1 CDS Noca_4135 NC_008699.1 4366885 4367352 R PFAM: MaoC domain protein dehydratase; KEGG: sma:SAV6603 hypothetical protein; dehydratase complement(4366885..4367352) Nocardioides sp. JS614 4596649 YP_925320.1 CDS Noca_4136 NC_008699.1 4367349 4368917 R PFAM: carboxyl transferase; KEGG: ade:Adeh_0250 carboxyl transferase; propionyl-CoA carboxylase complement(4367349..4368917) Nocardioides sp. JS614 4596650 YP_925321.1 CDS Noca_4137 NC_008699.1 4369039 4370703 D PFAM: AMP-dependent synthetase and ligase; KEGG: rpa:RPA0464 putative long-chain fatty-acid-CoA ligase; AMP-dependent synthetase and ligase 4369039..4370703 Nocardioides sp. JS614 4596651 YP_925322.1 CDS Noca_4138 NC_008699.1 4370700 4371674 D PFAM: 2-nitropropane dioxygenase, NPD; KEGG: mmc:Mmcs_4067 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 4370700..4371674 Nocardioides sp. JS614 4596652 YP_925323.1 CDS Noca_4139 NC_008699.1 4371667 4372464 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 4371667..4372464 Nocardioides sp. JS614 4596653 YP_925324.1 CDS Noca_4140 NC_008699.1 4372454 4372993 D KEGG: nfa:nfa27940 hypothetical protein; hypothetical protein 4372454..4372993 Nocardioides sp. JS614 4596654 YP_925325.1 CDS Noca_4141 NC_008699.1 4372974 4373723 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: tfu:Tfu_1259 enoyl-CoA hydratase/isomerase-like protein; enoyl-CoA hydratase complement(4372974..4373723) Nocardioides sp. JS614 4596655 YP_925326.1 CDS Noca_4142 NC_008699.1 4373723 4374916 R KEGG: rha:RHA1_ro01876 acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; acetyl-CoA acetyltransferase complement(4373723..4374916) Nocardioides sp. JS614 4596656 YP_925327.1 CDS Noca_4143 NC_008699.1 4375027 4378158 D KEGG: tfu:Tfu_2811 methylmalonyl-CoA mutase, N-terminal; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: ArgK protein; methylmalonyl-CoA mutase; cobalamin B12-binding domain protein; methylmalonyl-CoA mutase large subunit 4375027..4378158 Nocardioides sp. JS614 4596657 YP_925328.1 CDS Noca_4144 NC_008699.1 4378177 4378641 R PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: mca:MCA1307 cytosine deaminase; cytosine deaminase complement(4378177..4378641) Nocardioides sp. JS614 4596658 YP_925329.1 CDS Noca_4145 NC_008699.1 4378678 4379577 R PFAM: inner-membrane translocator; KEGG: mlo:mll4174 sugar ABC transporter, permease protein, rbsC-2; inner-membrane translocator complement(4378678..4379577) Nocardioides sp. JS614 4596659 YP_925330.1 CDS Noca_4146 NC_008699.1 4379574 4380674 R PFAM: inner-membrane translocator; KEGG: sme:SMa2367 putative ABC transporter, permease; inner-membrane translocator complement(4379574..4380674) Nocardioides sp. JS614 4596660 YP_925331.1 CDS Noca_4147 NC_008699.1 4380671 4382245 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: jan:Jann_1303 ABC transporter related; ABC transporter-like protein complement(4380671..4382245) Nocardioides sp. JS614 4596661 YP_925332.1 CDS Noca_4148 NC_008699.1 4382242 4383315 R PFAM: basic membrane lipoprotein; KEGG: mlo:mll4178 hypothetical protein, contains weak similarity to membrane lipoprotein; basic membrane lipoprotein complement(4382242..4383315) Nocardioides sp. JS614 4596662 YP_925333.1 CDS Noca_4149 NC_008699.1 4383460 4384989 D PFAM: purine catabolism PurC domain protein; KEGG: sco:SCO7033 regulatory protein; purine catabolism PurC domain-containing protein 4383460..4384989 Nocardioides sp. JS614 4596663 YP_925334.1 CDS Noca_4150 NC_008699.1 4385067 4385579 D KEGG: nfa:nfa27940 hypothetical protein; hypothetical protein 4385067..4385579 Nocardioides sp. JS614 4596664 YP_925335.1 CDS Noca_4151 NC_008699.1 4385679 4386314 R hypothetical protein complement(4385679..4386314) Nocardioides sp. JS614 4596665 YP_925336.1 CDS Noca_4152 NC_008699.1 4386370 4386975 R KEGG: mpa:MAP2481c hypothetical protein; hypothetical protein complement(4386370..4386975) Nocardioides sp. JS614 4596666 YP_925337.1 CDS Noca_4153 NC_008699.1 4387071 4389662 R KEGG: noc:Noca_0728 hypothetical protein; hypothetical protein complement(4387071..4389662) Nocardioides sp. JS614 4596667 YP_925338.1 CDS Noca_4154 NC_008699.1 4389713 4390405 R PFAM: bifunctional deaminase-reductase domain protein; KEGG: tfu:Tfu_1316 hypothetical protein; hypothetical protein complement(4389713..4390405) Nocardioides sp. JS614 4596668 YP_925339.1 CDS Noca_4155 NC_008699.1 4390402 4390908 R KEGG: tfu:Tfu_1315 hypothetical protein; hypothetical protein complement(4390402..4390908) Nocardioides sp. JS614 4596669 YP_925340.1 CDS Noca_4156 NC_008699.1 4390905 4391768 R KEGG: tfu:Tfu_1314 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS; dihydropteroate synthase complement(4390905..4391768) Nocardioides sp. JS614 4596670 YP_925341.1 CDS Noca_4157 NC_008699.1 4391765 4392664 R PFAM: glycosyl transferase, family 2; KEGG: tfu:Tfu_1732 hypothetical protein; putative glucosyl-3-phosphoglycerate synthase complement(4391765..4392664) Nocardioides sp. JS614 4596671 YP_925342.1 CDS Noca_4158 NC_008699.1 4392698 4393315 D PFAM: regulatory protein, TetR; KEGG: fal:FRAAL2897 putative transcription regulator TetR/AcrR family; TetR family transcriptional regulator 4392698..4393315 Nocardioides sp. JS614 4596672 YP_925343.1 CDS Noca_4159 NC_008699.1 4393319 4394149 R KEGG: fra:Francci3_3007 hypothetical protein; hypothetical protein complement(4393319..4394149) Nocardioides sp. JS614 4596673 YP_925344.1 CDS Noca_4160 NC_008699.1 4394302 4395081 R PFAM: cell wall hydrolase/autolysin; KEGG: fra:Francci3_1357 cell wall hydrolase/autolysin; cell wall hydrolase/autolysin complement(4394302..4395081) Nocardioides sp. JS614 4596674 YP_925345.1 CDS Noca_4161 NC_008699.1 4395081 4396085 R TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; KEGG: pac:PPA0069 UDP-glucose 4-epimerase; UDP-galactose 4-epimerase complement(4395081..4396085) Nocardioides sp. JS614 4596675 YP_925346.1 CDS Noca_4162 NC_008699.1 4396424 4396864 D hypothetical protein 4396424..4396864 Nocardioides sp. JS614 4596676 YP_925347.1 CDS Noca_4163 NC_008699.1 4396934 4397599 R hypothetical protein complement(4396934..4397599) Nocardioides sp. JS614 4596677 YP_925348.1 CDS Noca_4164 NC_008699.1 4397589 4398023 R hypothetical protein complement(4397589..4398023) Nocardioides sp. JS614 4596678 YP_925349.1 CDS Noca_4165 NC_008699.1 4398046 4398402 R hypothetical protein complement(4398046..4398402) Nocardioides sp. JS614 4596679 YP_925350.1 CDS Noca_4166 NC_008699.1 4398409 4399623 R KEGG: ath:At4g01985 expressed protein; hypothetical protein complement(4398409..4399623) Nocardioides sp. JS614 4596680 YP_925351.1 CDS Noca_4167 NC_008699.1 4399620 4399931 R hypothetical protein complement(4399620..4399931) Nocardioides sp. JS614 4596681 YP_925352.1 CDS Noca_4168 NC_008699.1 4400083 4401927 R catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP; phosphoenolpyruvate carboxykinase complement(4400083..4401927) Nocardioides sp. JS614 4596682 YP_925353.1 CDS Noca_4169 NC_008699.1 4402035 4403414 D PFAM: Sulfate transporter/antisigma-factor antagonist STAS; sulphate transporter; KEGG: tfu:Tfu_0873 sulfate permease, SulP family; sulfate transporter/antisigma-factor antagonist STAS 4402035..4403414 Nocardioides sp. JS614 4596683 YP_925354.1 CDS Noca_4170 NC_008699.1 4403402 4403845 R PFAM: regulatory protein, MarR; regulatory protein, ArsR; KEGG: mmc:Mmcs_2643 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(4403402..4403845) Nocardioides sp. JS614 4596684 YP_925355.1 CDS Noca_4171 NC_008699.1 4403943 4406273 D PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sco:SCO7374 nitrate reductase NarB (fragment); molybdopterin oxidoreductase 4403943..4406273 Nocardioides sp. JS614 4596685 YP_925356.1 CDS Noca_4172 NC_008699.1 4406275 4406751 D KEGG: mpa:MAP4100c hypothetical protein; hypothetical protein 4406275..4406751 Nocardioides sp. JS614 4596686 YP_925357.1 CDS Noca_4173 NC_008699.1 4406983 4407990 D PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro08310 short chain dehydrogenase; short chain dehydrogenase 4406983..4407990 Nocardioides sp. JS614 4596687 YP_925358.1 CDS Noca_4174 NC_008699.1 4407987 4410989 D PFAM: FAD linked oxidase domain protein; KEGG: sco:SCO5966 putative oxidase; FAD linked oxidase domain-containing protein 4407987..4410989 Nocardioides sp. JS614 4596688 YP_925359.1 CDS Noca_4175 NC_008699.1 4410986 4412767 D catalyzes the formation of acetate from pyruvate; thiamine pyrophosphate protein 4410986..4412767 Nocardioides sp. JS614 4596689 YP_925360.1 CDS Noca_4176 NC_008699.1 4412764 4413894 D PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: rha:RHA1_ro08313 probable mandalate racemase; mandelate racemase/muconate lactonizing protein 4412764..4413894 Nocardioides sp. JS614 4596690 YP_925361.1 CDS Noca_4177 NC_008699.1 4413912 4414988 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: nfa:nfa35140 putative dehydrogenase; alcohol dehydrogenase 4413912..4414988 Nocardioides sp. JS614 4596691 YP_925362.1 CDS Noca_4178 NC_008699.1 4414985 4416793 D PFAM: glycoside hydrolase 15-related; KEGG: tfu:Tfu_1345 hypothetical protein; glycoside hydrolase 15-like protein 4414985..4416793 Nocardioides sp. JS614 4596692 YP_925363.1 CDS Noca_4179 NC_008699.1 4416790 4416993 D hypothetical protein 4416790..4416993 Nocardioides sp. JS614 4596693 YP_925364.1 CDS Noca_4180 NC_008699.1 4417111 4418364 D KEGG: blo:BL0495 narrowly conserved hypothetical protein; hypothetical protein 4417111..4418364 Nocardioides sp. JS614 4596694 YP_925365.1 CDS Noca_4181 NC_008699.1 4418403 4419383 D TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: fra:Francci3_1307 GDP-mannose 4,6-dehydratase; GDP-mannose 4,6-dehydratase 4418403..4419383 Nocardioides sp. JS614 4596695 YP_925366.1 CDS Noca_4182 NC_008699.1 4419389 4420342 D PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: fal:FRAAL2056 GDP-D-mannose dehydratase, NAD(P)-binding (partial match); NAD-dependent epimerase/dehydratase 4419389..4420342 Nocardioides sp. JS614 4596696 YP_925367.1 CDS Noca_4183 NC_008699.1 4420495 4421799 R PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: mpa:MAP0443c hypothetical protein; HNH endonuclease complement(4420495..4421799) Nocardioides sp. JS614 4596697 YP_925368.1 CDS Noca_4184 NC_008699.1 4422049 4423881 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KR; KEGG: fal:FRAAL5661 dTDP-glucose 4,6-dehydratase transmembrane protein putative capsular polysaccharide biosynthesis protein; polysaccharide biosynthesis protein CapD complement(4422049..4423881) Nocardioides sp. JS614 4596698 YP_925369.1 CDS Noca_4185 NC_008699.1 4424170 4425591 D PFAM: lipopolysaccharide biosynthesis; KEGG: fal:FRAAL5660 putative tyrosine-protein kinase; lipopolysaccharide biosynthesis protein 4424170..4425591 Nocardioides sp. JS614 4596699 YP_925370.1 CDS Noca_4186 NC_008699.1 4425779 4426168 R PFAM: mannose-6-phosphate isomerase, type II; Cupin 2, conserved barrel domain protein; KEGG: rpe:RPE_3497 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; mannose-6-phosphate isomerase complement(4425779..4426168) Nocardioides sp. JS614 4596700 YP_925371.1 CDS Noca_4187 NC_008699.1 4426280 4426573 R KEGG: mpa:MAP3969 hypothetical protein; hypothetical protein complement(4426280..4426573) Nocardioides sp. JS614 4596701 YP_925372.1 CDS Noca_4188 NC_008699.1 4426848 4428206 R PFAM: aldehyde dehydrogenase; KEGG: rha:RHA1_ro01994 probable succinate-semialdehyde dehydrogenase (NAD(P)+); aldehyde dehydrogenase complement(4426848..4428206) Nocardioides sp. JS614 4596702 YP_925373.1 CDS Noca_4189 NC_008699.1 4428222 4429424 R KEGG: rha:RHA1_ro02904 possible fumarylacetoacetate hydrolase; putative fumarylacetoacetate hydrolase complement(4428222..4429424) Nocardioides sp. JS614 4596703 YP_925374.1 CDS Noca_4190 NC_008699.1 4429421 4429882 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mlo:mll8574 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase complement(4429421..4429882) Nocardioides sp. JS614 4596704 YP_925375.1 CDS Noca_4191 NC_008699.1 4429879 4430322 R PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: gbe:GbCGDNIH1_1383 blasticidin-S deaminase; zinc-binding CMP/dCMP deaminase complement(4429879..4430322) Nocardioides sp. JS614 4596705 YP_925376.1 CDS Noca_4192 NC_008699.1 4430330 4431250 R PFAM: inner-membrane translocator; KEGG: rxy:Rxyl_0158 inner-membrane translocator; inner-membrane translocator complement(4430330..4431250) Nocardioides sp. JS614 4596706 YP_925377.1 CDS Noca_4193 NC_008699.1 4431237 4432364 R PFAM: inner-membrane translocator; KEGG: cya:CYA_1582 carbohydrate ABC transporter-2 (CUT2) family, permease protein; inner-membrane translocator complement(4431237..4432364) Nocardioides sp. JS614 4596707 YP_925378.1 CDS Noca_4194 NC_008699.1 4432361 4433908 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rxy:Rxyl_0156 ABC transporter related; ABC transporter-like protein complement(4432361..4433908) Nocardioides sp. JS614 4596708 YP_925379.1 CDS Noca_4195 NC_008699.1 4433905 4434903 R PFAM: basic membrane lipoprotein; KEGG: rxy:Rxyl_0155 basic membrane lipoprotein; basic membrane lipoprotein complement(4433905..4434903) Nocardioides sp. JS614 4596709 YP_925380.1 CDS Noca_4196 NC_008699.1 4435048 4436004 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: rha:RHA1_ro02903 phosphoglycerate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase 4435048..4436004 Nocardioides sp. JS614 4596710 YP_925381.1 CDS Noca_4197 NC_008699.1 4436055 4436822 D PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: rha:RHA1_ro02909 transcriptional regulator, GntR family; GntR family transcriptional regulator 4436055..4436822 Nocardioides sp. JS614 4596711 YP_925382.1 CDS Noca_4198 NC_008699.1 4436819 4437610 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: fal:FRAAL3120 2-deoxy-D-gluconate 3-dehydrogenase (2-keto-3-deoxygluconate oxidoreductase); short-chain dehydrogenase/reductase SDR 4436819..4437610 Nocardioides sp. JS614 4596712 YP_925383.1 CDS Noca_4199 NC_008699.1 4437625 4439193 D PFAM: aldehyde dehydrogenase; KEGG: rha:RHA1_ro03790 aldehyde dehydrogenase (NAD+); aldehyde dehydrogenase 4437625..4439193 Nocardioides sp. JS614 4596713 YP_925384.1 CDS Noca_4200 NC_008699.1 4439297 4439992 R KEGG: rha:RHA1_ro02104 hypothetical protein; hypothetical protein complement(4439297..4439992) Nocardioides sp. JS614 4596714 YP_925385.1 CDS Noca_4201 NC_008699.1 4440010 4440396 R PFAM: helix-turn-helix domain protein; KEGG: fal:FRAAL0956 putative DNA-binding protein (partial match); helix-turn-helix domain-containing protein complement(4440010..4440396) Nocardioides sp. JS614 4596715 YP_925386.1 CDS Noca_4202 NC_008699.1 4440607 4441845 D TIGRFAM: mannose-6-phosphate isomerase, class I; PFAM: mannose-6-phosphate isomerase, type I; KEGG: tfu:Tfu_0016 mannose-6-phosphate isomerase, type I; mannose-6-phosphate isomerase 4440607..4441845 Nocardioides sp. JS614 4596716 YP_925387.1 CDS Noca_4203 NC_008699.1 4441847 4442869 R TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: rha:RHA1_ro05444 GDP-mannose 4,6-dehydratase; GDP-mannose 4,6-dehydratase complement(4441847..4442869) Nocardioides sp. JS614 4596717 YP_925388.1 CDS Noca_4204 NC_008699.1 4443092 4444066 R PFAM: L-asparaginase II; KEGG: sma:SAV4025 L-asparaginase II; L-asparaginase II complement(4443092..4444066) Nocardioides sp. JS614 4596718 YP_925389.1 CDS Noca_4205 NC_008699.1 4444114 4446126 D PFAM: low molecular weight phosphotyrosine protein phosphatase; adenylylsulfate kinase; KEGG: tfu:Tfu_0425 adenylylsulfate kinase; adenylylsulfate kinase 4444114..4446126 Nocardioides sp. JS614 4596719 YP_925390.1 CDS Noca_4206 NC_008699.1 4446176 4447165 D PFAM: protein of unknown function DUF81; KEGG: fal:FRAAL1625 membrane protein, putative (partial match); hypothetical protein 4446176..4447165 Nocardioides sp. JS614 4596720 YP_925391.1 CDS Noca_4207 NC_008699.1 4447270 4448184 D with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 4447270..4448184 Nocardioides sp. JS614 4596721 YP_925392.1 CDS Noca_4208 NC_008699.1 4448184 4449482 D KEGG: fal:FRAAL2109 ATP-sulfurylase, subunit 1 (ATP:sulfate adenylyltransferase); TIGRFAM: small GTP-binding protein; sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; sulfate adenylyltransferase subunit 1 4448184..4449482 Nocardioides sp. JS614 4596722 YP_925393.1 CDS Noca_4209 NC_008699.1 4449613 4450209 D KEGG: pac:PPA0134 putative acetyltransferase; putative acetyltransferase 4449613..4450209 Nocardioides sp. JS614 4596723 YP_925394.1 CDS Noca_4210 NC_008699.1 4450213 4451301 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pac:PPA0135 aspartate aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 4450213..4451301 Nocardioides sp. JS614 4596724 YP_925395.1 CDS Noca_4211 NC_008699.1 4451303 4452316 D PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: pac:PPA0136 NAD-dependent dehydrogenase; oxidoreductase domain-containing protein 4451303..4452316 Nocardioides sp. JS614 4596725 YP_925396.1 CDS Noca_4212 NC_008699.1 4452313 4453614 D PFAM: UDP-glucose/GDP-mannose dehydrogenase; 6-phosphogluconate dehydrogenase, NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: pac:PPA0145 putative UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase 4452313..4453614 Nocardioides sp. JS614 4596726 YP_925397.1 CDS Noca_4213 NC_008699.1 4453812 4454843 D KEGG: aba:Acid345_3309 membrane protein involved in the export of O-antigen and teichoic acid; hypothetical protein 4453812..4454843 Nocardioides sp. JS614 4596727 YP_925398.1 CDS Noca_4214 NC_008699.1 4454845 4456137 D hypothetical protein 4454845..4456137 Nocardioides sp. JS614 4596728 YP_925399.1 CDS Noca_4215 NC_008699.1 4456134 4457357 D PFAM: glycosyl transferase, group 1; KEGG: tte:TTE0660 predicted glycosyltransferase; group 1 glycosyl transferase 4456134..4457357 Nocardioides sp. JS614 4596729 YP_925400.1 CDS Noca_4216 NC_008699.1 4457350 4458183 R PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: ter:Tery_2252 methyltransferase type 11; type 11 methyltransferase complement(4457350..4458183) Nocardioides sp. JS614 4596730 YP_925401.1 CDS Noca_4217 NC_008699.1 4458256 4459512 R PFAM: glycosyl transferase, group 1; KEGG: cvi:CV4119 probable glycosyltransferase; group 1 glycosyl transferase complement(4458256..4459512) Nocardioides sp. JS614 4596731 YP_925402.1 CDS Noca_4218 NC_008699.1 4459522 4460307 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mmc:Mmcs_1869 methyltransferase type 11; type 11 methyltransferase complement(4459522..4460307) Nocardioides sp. JS614 4596732 YP_925403.1 CDS Noca_4219 NC_008699.1 4460304 4460891 R PFAM: sugar transferase; KEGG: bth:BT0611 glycosyltransferase; sugar transferase complement(4460304..4460891) Nocardioides sp. JS614 4596733 YP_925404.1 CDS Noca_4220 NC_008699.1 4460939 4462048 R PFAM: aminotransferase, class V; DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: gka:GK3168 pleiotropic regulatory protein; DegT/DnrJ/EryC1/StrS aminotransferase complement(4460939..4462048) Nocardioides sp. JS614 4596734 YP_925405.1 CDS Noca_4221 NC_008699.1 4462048 4462971 R PFAM: Transketolase, central region; Transketolase domain protein; KEGG: lmf:LMOf2365_1054 transketolase, C-terminal subunit, putative; transketolase subunit B complement(4462048..4462971) Nocardioides sp. JS614 4596735 YP_925406.1 CDS Noca_4222 NC_008699.1 4462968 4463780 R PFAM: Transketolase domain protein; KEGG: tma:TM0954 transketolase, N-terminal subunit; transketolase complement(4462968..4463780) Nocardioides sp. JS614 4596736 YP_925407.1 CDS Noca_4223 NC_008699.1 4463786 4464607 R KEGG: sma:SAV951 dTDP-6-deoxy-L-hexose 3-O-methyltransferase; dTDP-6-deoxy-L-hexose 3-O-methyltransferase complement(4463786..4464607) Nocardioides sp. JS614 4596737 YP_925408.1 CDS Noca_4224 NC_008699.1 4464696 4466396 R KEGG: mmc:Mmcs_0947 hypothetical protein; hypothetical protein complement(4464696..4466396) Nocardioides sp. JS614 4596738 YP_925409.1 CDS Noca_4225 NC_008699.1 4466500 4466913 R hypothetical protein complement(4466500..4466913) Nocardioides sp. JS614 4596739 YP_925410.1 CDS Noca_4226 NC_008699.1 4467029 4467940 R PFAM: protein of unknown function DUF849; KEGG: sth:STH64 hypothetical protein; 3-keto-5-aminohexanoate cleavage protein complement(4467029..4467940) Nocardioides sp. JS614 4596740 YP_925411.1 CDS Noca_4227 NC_008699.1 4468524 4468940 D hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 4468524..4468940 Nocardioides sp. JS614 4596741 YP_925412.1 CDS Noca_4228 NC_008699.1 4469118 4471079 D KEGG: bld:BLi00800 hypothetical protein; hypothetical protein 4469118..4471079 Nocardioides sp. JS614 4596742 YP_925413.1 CDS Noca_4229 NC_008699.1 4471245 4471541 R PFAM: protein of unknown function DUF1416; KEGG: fra:Francci3_0450 protein of unknown function DUF1416; hypothetical protein complement(4471245..4471541) Nocardioides sp. JS614 4596743 YP_925414.1 CDS Noca_4230 NC_008699.1 4471541 4472389 R PFAM: Rhodanese domain protein; KEGG: mmc:Mmcs_4529 thiosulfate sulfurtransferase; rhodanese domain-containing protein complement(4471541..4472389) Nocardioides sp. JS614 4596744 YP_925415.1 CDS Noca_4231 NC_008699.1 4472445 4472930 R KEGG: sma:SAV1484 hypothetical protein; hypothetical protein complement(4472445..4472930) Nocardioides sp. JS614 4596745 YP_925416.1 CDS Noca_4232 NC_008699.1 4473253 4473765 R KEGG: fal:FRAAL0941 putative thioredoxin; putative thioredoxin complement(4473253..4473765) Nocardioides sp. JS614 4596746 YP_925417.1 CDS Noca_4233 NC_008699.1 4473825 4474253 D KEGG: lxx:Lxx09000 hypothetical protein; hypothetical protein 4473825..4474253 Nocardioides sp. JS614 4596747 YP_925418.1 CDS Noca_4234 NC_008699.1 4474230 4474520 R PFAM: regulatory protein, MerR; KEGG: fal:FRAAL4032 putative chaperone locus transcriptional regulator, HspR; regulatory protein MerR complement(4474230..4474520) Nocardioides sp. JS614 4596748 YP_925419.1 CDS Noca_4235 NC_008699.1 4474775 4475206 D PFAM: heat shock protein Hsp20; KEGG: rha:RHA1_ro08348 heat shock protein (18 KDa antigen-like protein); heat shock protein Hsp20 4474775..4475206 Nocardioides sp. JS614 4596749 YP_925420.1 CDS Noca_4236 NC_008699.1 4475262 4476080 R KEGG: ddi:DDB0204485 hypothetical protein; hypothetical protein complement(4475262..4476080) Nocardioides sp. JS614 4596750 YP_925421.1 CDS Noca_4237 NC_008699.1 4476073 4476630 R TIGRFAM: peptidase S26B, signal peptidase; PFAM: peptidase S24, S26A and S26B; KEGG: tfu:Tfu_2961 peptidase S26B, eukaryotic signal peptidase; peptidase S26B, signal peptidase complement(4476073..4476630) Nocardioides sp. JS614 4596751 YP_925422.1 CDS Noca_4238 NC_008699.1 4476678 4477190 R KEGG: cef:CE1188 hypothetical protein; hypothetical protein complement(4476678..4477190) Nocardioides sp. JS614 4596752 YP_925423.1 CDS Noca_4239 NC_008699.1 4477395 4477667 R PFAM: thiamineS protein; KEGG: fra:Francci3_0445 thiamine S; sulfur transfer protein ThiS complement(4477395..4477667) Nocardioides sp. JS614 4596753 YP_925424.1 CDS Noca_4240 NC_008699.1 4477761 4478534 D PFAM: transcriptional regulator domain protein; KEGG: sco:SCO4159 transcriptional regulatory protein; transcriptional regulator domain-containing protein 4477761..4478534 Nocardioides sp. JS614 4596754 YP_925425.1 CDS Noca_4241 NC_008699.1 4478508 4478906 R hypothetical protein complement(4478508..4478906) Nocardioides sp. JS614 4596755 YP_925426.1 CDS Noca_4242 NC_008699.1 4478909 4481437 R PFAM: MMPL domain protein; KEGG: fal:FRAAL1424 putative integral membrane export protein; MMPL domain-containing protein complement(4478909..4481437) Nocardioides sp. JS614 4596756 YP_925427.1 CDS Noca_4243 NC_008699.1 4481437 4482297 R KEGG: sma:SAV1712 hypothetical protein; hypothetical protein complement(4481437..4482297) Nocardioides sp. JS614 4596757 YP_925428.1 CDS Noca_4244 NC_008699.1 4482475 4483113 D PFAM: regulatory protein, TetR; KEGG: fra:Francci3_1551 transcriptional regulator, TetR family; TetR family transcriptional regulator 4482475..4483113 Nocardioides sp. JS614 4596758 YP_925429.1 CDS Noca_4245 NC_008699.1 4483138 4483803 R PFAM: regulatory protein, TetR; KEGG: cvi:CV1837 probable transcriptional regulator, TetR family; regulatory protein TetR complement(4483138..4483803) Nocardioides sp. JS614 4596759 YP_925430.1 CDS Noca_4246 NC_008699.1 4483859 4484809 R KEGG: rpc:RPC_1203 dipeptidyl aminopeptidases/acylaminoacyl-peptidases-like; dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein complement(4483859..4484809) Nocardioides sp. JS614 4596760 YP_925431.1 CDS Noca_4247 NC_008699.1 4485163 4487343 R PFAM: MMPL domain protein; KEGG: rha:RHA1_ro04933 membrane efflux protein; MMPL domain-containing protein complement(4485163..4487343) Nocardioides sp. JS614 4596761 YP_925432.1 CDS Noca_4248 NC_008699.1 4487477 4488364 D PFAM: GCN5-related N-acetyltransferase; FR47 domain protein; KEGG: nfa:nfa5990 putative acetyltransferase; N-acetyltransferase GCN5 4487477..4488364 Nocardioides sp. JS614 4596762 YP_925433.1 CDS Noca_4249 NC_008699.1 4488382 4488648 R hypothetical protein complement(4488382..4488648) Nocardioides sp. JS614 4596763 YP_925434.1 CDS Noca_4250 NC_008699.1 4488891 4489865 R PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: sma:SAV4028 hypothetical protein; glycine cleavage T protein (aminomethyl transferase) complement(4488891..4489865) Nocardioides sp. JS614 4596764 YP_925435.1 CDS Noca_4251 NC_008699.1 4489862 4490281 R PFAM: ferric-uptake regulator; Penicillinase repressor; KEGG: sma:SAV4029 iron uptake regulatory protein; FUR family nickel uptake regulator complement(4489862..4490281) Nocardioides sp. JS614 4596765 YP_925436.1 CDS Noca_4252 NC_008699.1 4490329 4490823 R KEGG: pac:PPA0347 hypothetical protein; hypothetical protein complement(4490329..4490823) Nocardioides sp. JS614 4596766 YP_925437.1 CDS Noca_4253 NC_008699.1 4490847 4491203 D KEGG: fra:Francci3_0454 conserved hypothetical protein; hypothetical protein 4490847..4491203 Nocardioides sp. JS614 4596767 YP_925438.1 CDS Noca_4254 NC_008699.1 4491249 4493720 D KEGG: tcr:503617.20 kinetoplast DNA-associated protein Pfam: DUF1682 HC2 TolA PROSITE: ALA_RICH GLU_RICH; hypothetical protein 4491249..4493720 Nocardioides sp. JS614 4596768 YP_925439.1 CDS Noca_4255 NC_008699.1 4494242 4495204 D KEGG: rha:RHA1_ro04851 hypothetical protein; hypothetical protein 4494242..4495204 Nocardioides sp. JS614 4596769 YP_925440.1 CDS Noca_4256 NC_008699.1 4495266 4496309 R PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: mpa:MAP3006c LipN; alpha/beta hydrolase domain-containing protein complement(4495266..4496309) Nocardioides sp. JS614 4596770 YP_925441.1 CDS Noca_4257 NC_008699.1 4496425 4498515 D catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 4496425..4498515 Nocardioides sp. JS614 4596771 YP_925442.1 CDS Noca_4258 NC_008699.1 4498659 4499276 D PFAM: protein of unknown function DUF47; KEGG: sco:SCO4137 hypothetical protein; hypothetical protein 4498659..4499276 Nocardioides sp. JS614 4596772 YP_925443.1 CDS Noca_4259 NC_008699.1 4499278 4500276 D PFAM: phosphate transporter; KEGG: sma:SAV4076 putative low-affinity inorganic phosphate transporter; phosphate transporter 4499278..4500276 Nocardioides sp. JS614 4596773 YP_925444.1 CDS Noca_4260 NC_008699.1 4500451 4501230 R KEGG: tfu:Tfu_2743 phosphate transport system permease protein 1; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; phosphate ABC transporter ATPase complement(4500451..4501230) Nocardioides sp. JS614 4596774 YP_925445.1 CDS Noca_4261 NC_008699.1 4501268 4502344 R TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lxx:Lxx18440 ABC transporter, permease protein; phosphate ABC transporter permease complement(4501268..4502344) Nocardioides sp. JS614 4596775 YP_925446.1 CDS Noca_4262 NC_008699.1 4502350 4503288 R TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lxx:Lxx18430 ABC transporter, permease protein; phosphate ABC transporter permease complement(4502350..4503288) Nocardioides sp. JS614 4596776 YP_925447.1 CDS Noca_4263 NC_008699.1 4503383 4504495 R TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: lxx:Lxx18420 phosphate porter; phosphate ABC transporter, periplasmic phosphate-binding protein complement(4503383..4504495) Nocardioides sp. JS614 4596777 YP_925448.1 CDS Noca_4264 NC_008699.1 4504666 4505526 R PFAM: NUDIX hydrolase; Phosphoglycerate mutase; KEGG: pac:PPA0342 hypothetical protein; NUDIX hydrolase complement(4504666..4505526) Nocardioides sp. JS614 4596778 YP_925449.1 CDS Noca_4265 NC_008699.1 4505569 4506642 D hypothetical protein 4505569..4506642 Nocardioides sp. JS614 4596779 YP_925450.1 CDS Noca_4266 NC_008699.1 4506768 4507820 D KEGG: mmc:Mmcs_0096 hypothetical protein; hypothetical protein 4506768..4507820 Nocardioides sp. JS614 4596780 YP_925451.1 CDS Noca_4267 NC_008699.1 4507906 4508238 R PFAM: protein of unknown function DUF156; KEGG: rha:RHA1_ro03538 hypothetical protein; hypothetical protein complement(4507906..4508238) Nocardioides sp. JS614 4596781 YP_925452.1 CDS Noca_4268 NC_008699.1 4508295 4508480 R hypothetical protein complement(4508295..4508480) Nocardioides sp. JS614 4596782 YP_925453.1 CDS Noca_4269 NC_008699.1 4508671 4508874 R PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: sco:SCO4505 cold shock protein; cold-shock DNA-binding protein family protein complement(4508671..4508874) Nocardioides sp. JS614 4596783 YP_925454.1 CDS Noca_4270 NC_008699.1 4509471 4510586 R KEGG: rha:RHA1_ro05296 cyanuric acid amidohydrolase; barbiturase complement(4509471..4510586) Nocardioides sp. JS614 4596784 YP_925455.1 CDS Noca_4271 NC_008699.1 4510583 4513066 R PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: ctc:CTC02477 putative carbon-monoxide dehydrogenase, large subunit; xanthine dehydrogenase, molybdenum binding subunit apoprotein complement(4510583..4513066) Nocardioides sp. JS614 4596785 YP_925456.1 CDS Noca_4272 NC_008699.1 4513059 4513562 R PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: chy:CHY_0691 2Fe-2S iron-sulfur cluster binding domain; 2Fe-2S iron-sulfur cluster binding domain-containing protein complement(4513059..4513562) Nocardioides sp. JS614 4596786 YP_925457.1 CDS Noca_4273 NC_008699.1 4513562 4514377 R PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: sme:SMb20130 putative dehydrogenase protein; molybdopterin dehydrogenase complement(4513562..4514377) Nocardioides sp. JS614 4596787 YP_925458.1 CDS Noca_4274 NC_008699.1 4514838 4516550 R KEGG: rha:RHA1_ro04368 hypothetical protein; hypothetical protein complement(4514838..4516550) Nocardioides sp. JS614 4596789 YP_925459.1 CDS Noca_4275 NC_008699.1 4516778 4518190 D PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro04369 multidrug transport protein, MFS superfamily; major facilitator transporter 4516778..4518190 Nocardioides sp. JS614 4596790 YP_925460.1 CDS Noca_4276 NC_008699.1 4518204 4519862 R KEGG: rha:RHA1_ro04370 hypothetical protein; CdaR family transcriptional regulator complement(4518204..4519862) Nocardioides sp. JS614 4596791 YP_925461.1 CDS Noca_4277 NC_008699.1 4519991 4520443 D PFAM: protein of unknown function DUF336; KEGG: rha:RHA1_ro04371 possible GlcG protein; hypothetical protein 4519991..4520443 Nocardioides sp. JS614 4596792 YP_925462.1 CDS Noca_4278 NC_008699.1 4520452 4520949 R PFAM: Endoribonuclease L-PSP; KEGG: rha:RHA1_ro04378 hypothetical protein; endoribonuclease L-PSP complement(4520452..4520949) Nocardioides sp. JS614 4596793 YP_925463.1 CDS Noca_4279 NC_008699.1 4521053 4522612 R PFAM: gamma-glutamyltranspeptidase; KEGG: rha:RHA1_ro04377 probable gamma-glutamyltransferase; gamma-glutamyltransferase complement(4521053..4522612) Nocardioides sp. JS614 4596794 YP_925464.1 CDS Noca_4280 NC_008699.1 4522672 4523073 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: rha:RHA1_ro04376 probable aromatic ring dioxygenase; Rieske (2Fe-2S) domain-containing protein complement(4522672..4523073) Nocardioides sp. JS614 4596795 YP_925465.1 CDS Noca_4281 NC_008699.1 4523084 4524529 R PFAM: aldehyde dehydrogenase; KEGG: rha:RHA1_ro04375 aldehyde dehydrogenase (NAD+); aldehyde dehydrogenase complement(4523084..4524529) Nocardioides sp. JS614 4596796 YP_925466.1 CDS Noca_4282 NC_008699.1 4524522 4525733 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rha:RHA1_ro04374 reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(4524522..4525733) Nocardioides sp. JS614 4596797 YP_925467.1 CDS Noca_4283 NC_008699.1 4525730 4526056 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: rha:RHA1_ro04373 probable dioxygenase ferredoxin component; Rieske (2Fe-2S) domain-containing protein complement(4525730..4526056) Nocardioides sp. JS614 4596798 YP_925468.1 CDS Noca_4284 NC_008699.1 4526187 4526951 R KEGG: rha:RHA1_ro04372 possible coenzyme PQQ synthesis protein; putative coenzyme PQQ synthesis protein complement(4526187..4526951) Nocardioides sp. JS614 4596799 YP_925469.1 CDS Noca_4285 NC_008699.1 4527024 4527893 D PFAM: protein of unknown function DUF1275; KEGG: bli:BL00156 conserved membrane protein YoaK; hypothetical protein 4527024..4527893 Nocardioides sp. JS614 4596800 YP_925470.1 CDS Noca_4286 NC_008699.1 4528136 4528918 D hypothetical protein 4528136..4528918 Nocardioides sp. JS614 4596801 YP_925471.1 CDS Noca_4287 NC_008699.1 4528866 4529483 R PFAM: GCN5-related N-acetyltransferase; KEGG: cef:CE0548 hypothetical protein; N-acetyltransferase GCN5 complement(4528866..4529483) Nocardioides sp. JS614 4596802 YP_925472.1 CDS Noca_4288 NC_008699.1 4529525 4530214 D PFAM: thioesterase superfamily protein; KEGG: mmc:Mmcs_2763 thioesterase superfamily; thioesterase superfamily protein 4529525..4530214 Nocardioides sp. JS614 4596803 YP_925473.1 CDS Noca_4289 NC_008699.1 4530345 4531850 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: fal:FRAAL1622 NADH dehydrogenase; NADH dehydrogenase complement(4530345..4531850) Nocardioides sp. JS614 4596804 YP_925474.1 CDS Noca_4290 NC_008699.1 4532116 4533063 D PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: sco:SCO0542 hypothetical regulatory protein; ATPase domain-containing protein 4532116..4533063 Nocardioides sp. JS614 4596805 YP_925475.1 CDS Noca_4291 NC_008699.1 4533106 4533459 R PFAM: protein of unknown function DUF1025; KEGG: mpa:MAP0195c hypothetical protein; hypothetical protein complement(4533106..4533459) Nocardioides sp. JS614 4596806 YP_925476.1 CDS Noca_4292 NC_008699.1 4534250 4535419 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rha:RHA1_ro02304 probable glutaryl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(4534250..4535419) Nocardioides sp. JS614 4596810 YP_925477.1 CDS Noca_4293 NC_008699.1 4535431 4536582 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rha:RHA1_ro02631 possible butyryl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(4535431..4536582) Nocardioides sp. JS614 4596811 YP_925478.1 CDS Noca_4294 NC_008699.1 4536585 4537448 R PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: cef:CE0323 putative 3-hydroxybutyryl-CoA dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase complement(4536585..4537448) Nocardioides sp. JS614 4596812 YP_925479.1 CDS Noca_4295 NC_008699.1 4537448 4538230 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: cef:CE2776 putative 3-hydroxybutyryl-CoA dehydratase; short chain enoyl-CoA hydratase complement(4537448..4538230) Nocardioides sp. JS614 4596813 YP_925480.1 CDS Noca_4296 NC_008699.1 4538227 4539846 R AliA; in Rhodopseudomonas palustris, this enzyme was found to act on 3-chlorobenzoate and allows the organism to grow on this substrate; cyclohexanecarboxylate-CoA ligase complement(4538227..4539846) Nocardioides sp. JS614 4596814 YP_925481.1 CDS Noca_4297 NC_008699.1 4539863 4540603 R PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: cef:CE2778 putative 2-hydroxycyclohexanecarboxyl-CoA dehyrogenase; short-chain dehydrogenase/reductase SDR complement(4539863..4540603) Nocardioides sp. JS614 4596815 YP_925482.1 CDS Noca_4298 NC_008699.1 4540672 4541817 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: eba:ebA1959 cyclohexanecarboxyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(4540672..4541817) Nocardioides sp. JS614 4596816 YP_925483.1 CDS Noca_4299 NC_008699.1 4541839 4542636 R TIGRFAM: naphthoate synthase; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rha:RHA1_ro02630 probable naphthoate synthase; 1,4-dihydroxy-2-naphthoate synthase complement(4541839..4542636) Nocardioides sp. JS614 4596817 YP_925484.1 CDS Noca_4300 NC_008699.1 4542782 4543459 D PFAM: regulatory protein, TetR; KEGG: rha:RHA1_ro02626 transcriptional regulator; transcriptional regulator 4542782..4543459 Nocardioides sp. JS614 4596818 YP_925485.1 CDS Noca_4301 NC_008699.1 4543494 4543769 R hypothetical protein complement(4543494..4543769) Nocardioides sp. JS614 4596819 YP_925486.1 CDS Noca_4302 NC_008699.1 4543857 4544363 R PFAM: Hemerythrin HHE cation binding domain protein; KEGG: sso:SSO1764 hypothetical protein; hemerythrin HHE cation binding domain-containing protein complement(4543857..4544363) Nocardioides sp. JS614 4596820 YP_925487.1 CDS Noca_4303 NC_008699.1 4544376 4544720 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mpa:MAP2726c FdxA; 4Fe-4S ferredoxin complement(4544376..4544720) Nocardioides sp. JS614 4596821 YP_925488.1 CDS Noca_4304 NC_008699.1 4544811 4545500 D KEGG: bba:Bd1520 hypothetical protein; hypothetical protein 4544811..4545500 Nocardioides sp. JS614 4596822 YP_925489.1 CDS Noca_4305 NC_008699.1 4545490 4546275 D KEGG: rha:RHA1_ro08261 possible transcriptional regulator, MarR family; transcriptional regulator 4545490..4546275 Nocardioides sp. JS614 4596823 YP_925490.1 CDS Noca_4306 NC_008699.1 4546409 4547017 R TIGRFAM: serine O-acetyltransferase; KEGG: pfo:Pfl_4614 serine O-acetyltransferase; serine O-acetyltransferase complement(4546409..4547017) Nocardioides sp. JS614 4596824 YP_925491.1 CDS Noca_4307 NC_008699.1 4547020 4547949 R TIGRFAM: cysteine synthases; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: mpa:MAP2123 cysteine synthase; cysteine synthase complement(4547020..4547949) Nocardioides sp. JS614 4596825 YP_925492.1 CDS Noca_4308 NC_008699.1 4548592 4548975 R hypothetical protein complement(4548592..4548975) Nocardioides sp. JS614 4596826 YP_925493.1 CDS Noca_4309 NC_008699.1 4549087 4552860 D KEGG: mmc:Mmcs_3642 PE-PGRS family protein; hypothetical protein 4549087..4552860 Nocardioides sp. JS614 4596827 YP_925494.1 CDS Noca_4310 NC_008699.1 4553045 4555807 R KEGG: cps:CPS_4816 hypothetical protein; hypothetical protein complement(4553045..4555807) Nocardioides sp. JS614 4596828 YP_925495.1 CDS Noca_4311 NC_008699.1 4555839 4559111 D KEGG: cya:CYA_2836 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase 4555839..4559111 Nocardioides sp. JS614 4596829 YP_925496.1 CDS Noca_4312 NC_008699.1 4559113 4560351 D hypothetical protein 4559113..4560351 Nocardioides sp. JS614 4596830 YP_925497.1 CDS Noca_4313 NC_008699.1 4560433 4561524 D PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; KEGG: sma:SAV4132 putative valine dehydrogenase (NADP+); VanW protein 4560433..4561524 Nocardioides sp. JS614 4596831 YP_925498.1 CDS Noca_4314 NC_008699.1 4561734 4561922 R KEGG: mbo:Mb0833c hypothetical protein; hypothetical protein complement(4561734..4561922) Nocardioides sp. JS614 4596832 YP_925499.1 CDS Noca_4315 NC_008699.1 4562133 4563221 R KEGG: sco:SCO4087 phosphoribosylformylglycinamidine cyclo-ligase; TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; phosphoribosylformylglycinamidine cyclo-ligase complement(4562133..4563221) Nocardioides sp. JS614 4596833 YP_925500.1 CDS Noca_4316 NC_008699.1 4563229 4564773 R Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase complement(4563229..4564773) Nocardioides sp. JS614 4596834 YP_925501.1 CDS Noca_4317 NC_008699.1 4564918 4566720 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: GAF domain protein; KEGG: sth:STH843 two-component sensor histidine kinase; ATPase domain-containing protein 4564918..4566720 Nocardioides sp. JS614 4596835 YP_925502.1 CDS Noca_4318 NC_008699.1 4566808 4568589 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: ava:Ava_2239 adenylate/guanylate cyclase; ATPase domain-containing protein 4566808..4568589 Nocardioides sp. JS614 4596836 YP_925503.1 CDS Noca_4319 NC_008699.1 4568701 4570038 R PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: mmc:Mmcs_3645 peptidase M20; hypothetical protein complement(4568701..4570038) Nocardioides sp. JS614 4596837 YP_925504.1 CDS Noca_4320 NC_008699.1 4570118 4570477 R KEGG: tfu:Tfu_2746 hypothetical protein; hypothetical protein complement(4570118..4570477) Nocardioides sp. JS614 4596838 YP_925505.1 CDS Noca_4321 NC_008699.1 4570477 4571079 R PFAM: regulatory protein, ArsR; KEGG: sma:SAV5143 ArsR-family transcriptional regulator; ArsR family transcriptional regulator complement(4570477..4571079) Nocardioides sp. JS614 4596839 YP_925506.1 CDS Noca_4322 NC_008699.1 4571149 4572405 D PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV3640 multidrug resistance protein; major facilitator transporter 4571149..4572405 Nocardioides sp. JS614 4596840 YP_925507.1 CDS Noca_4323 NC_008699.1 4572481 4573464 R PFAM: protein of unknown function UPF0074; Helix-turn-helix, type 11 domain protein; KEGG: fal:FRAAL3900 putative DeoR-family transcriptional regulator; helix-turn-helix, type 11 domain-containing protein complement(4572481..4573464) Nocardioides sp. JS614 4596841 YP_925508.1 CDS Noca_4324 NC_008699.1 4573506 4573760 D hypothetical protein 4573506..4573760 Nocardioides sp. JS614 4596842 YP_925509.1 CDS Noca_4325 NC_008699.1 4573771 4574610 R KEGG: mxa:MXAN_0913 hypothetical protein; hypothetical protein complement(4573771..4574610) Nocardioides sp. JS614 4596843 YP_925510.1 CDS Noca_4326 NC_008699.1 4574768 4577023 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II complement(4574768..4577023) Nocardioides sp. JS614 4596844 YP_925511.1 CDS Noca_4327 NC_008699.1 4577207 4577755 R PFAM: regulatory protein, TetR; KEGG: sma:SAV6352 TetR-family transcriptional regulator; regulatory protein TetR complement(4577207..4577755) Nocardioides sp. JS614 4596845 YP_925512.1 CDS Noca_4328 NC_008699.1 4577888 4579336 D PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV6351 transmembrane efflux protein; major facilitator transporter 4577888..4579336 Nocardioides sp. JS614 4596846 YP_925513.1 CDS Noca_4329 NC_008699.1 4579359 4579619 R hypothetical protein complement(4579359..4579619) Nocardioides sp. JS614 4596847 YP_925514.1 CDS Noca_4330 NC_008699.1 4579841 4581298 D PFAM: Peptidoglycan-binding domain 1 protein; KEGG: sma:SAV6085 hypothetical protein; peptidoglycan binding domain-containing protein 4579841..4581298 Nocardioides sp. JS614 4596848 YP_925515.1 CDS Noca_4331 NC_008699.1 4581318 4581764 R KEGG: lxx:Lxx22990 membrane protein; membrane protein complement(4581318..4581764) Nocardioides sp. JS614 4596849 YP_925516.1 CDS Noca_4332 NC_008699.1 4581761 4582429 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I complement(4581761..4582429) Nocardioides sp. JS614 4596850 YP_925517.1 CDS Noca_4333 NC_008699.1 4582426 4582683 R TIGRFAM: phosphoribosylformylglycinamidine synthase, purS; PFAM: phosphoribosylformylglycinamidine synthetase PurS; KEGG: sma:SAV4140 phosphoribosylformylglycinamidine synthase; phosphoribosylformylglycinamidine synthase PurS complement(4582426..4582683) Nocardioides sp. JS614 4596851 YP_925518.1 CDS Noca_4334 NC_008699.1 4582767 4583270 D KEGG: pac:PPA0648 hypothetical protein; hypothetical protein 4582767..4583270 Nocardioides sp. JS614 4596852 YP_925519.1 CDS Noca_4335 NC_008699.1 4583397 4584962 R PFAM: AMP-dependent synthetase and ligase; KEGG: rha:RHA1_ro03779 long-chain-fatty-acid--CoA ligase; AMP-dependent synthetase and ligase complement(4583397..4584962) Nocardioides sp. JS614 4596853 YP_925520.1 CDS Noca_4336 NC_008699.1 4585067 4585474 R hypothetical protein complement(4585067..4585474) Nocardioides sp. JS614 4596854 YP_925521.1 CDS Noca_4337 NC_008699.1 4585468 4586322 R KEGG: sma:SAV4146 putative phosphoribosylaminoimidazole-succinocar boxamide synthetase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(4585468..4586322) Nocardioides sp. JS614 4596855 YP_925522.1 CDS Noca_4338 NC_008699.1 4586416 4587030 D KEGG: sma:SAV48 hypothetical protein; hypothetical protein 4586416..4587030 Nocardioides sp. JS614 4596856 YP_925523.1 CDS Noca_4339 NC_008699.1 4587049 4587348 R PFAM: acylphosphatase; KEGG: tko:TK2031 acylphosphatase; acylphosphatase complement(4587049..4587348) Nocardioides sp. JS614 4596857 YP_925524.1 CDS Noca_4340 NC_008699.1 4587365 4588807 D PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO0680 transmembrane efflux protein; major facilitator transporter 4587365..4588807 Nocardioides sp. JS614 4596858 YP_925525.1 CDS Noca_4341 NC_008699.1 4588817 4590247 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(4588817..4590247) Nocardioides sp. JS614 4596859 YP_925526.1 CDS Noca_4342 NC_008699.1 4590349 4591599 R KEGG: sma:SAV4149 putative phosphoribosylglycinamide synthetase; TIGRFAM: phosphoribosylamine--glycine ligase; PFAM: phosphoribosylglycinamide synthetase; phosphoribosylamine--glycine ligase complement(4590349..4591599) Nocardioides sp. JS614 4596860 YP_925527.1 CDS Noca_4343 NC_008699.1 4591611 4592522 R PFAM: Catalase domain protein; KEGG: mpa:MAP2744c hypothetical protein; catalase domain-containing protein complement(4591611..4592522) Nocardioides sp. JS614 4596861 YP_925528.1 CDS Noca_4344 NC_008699.1 4592536 4593834 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(4592536..4593834) Nocardioides sp. JS614 4596862 YP_925529.1 CDS Noca_4345 NC_008699.1 4593998 4594894 D PFAM: diacylglycerol kinase, catalytic region; KEGG: ade:Adeh_3510 hypothetical protein; diacylglycerol kinase catalytic subunit 4593998..4594894 Nocardioides sp. JS614 4596863 YP_925530.1 CDS Noca_4346 NC_008699.1 4595163 4596155 R PFAM: Helix-turn-helix, type 11 domain protein; KEGG: sco:SCO1353 transcriptional regulator; helix-turn-helix, type 11 domain-containing protein complement(4595163..4596155) Nocardioides sp. JS614 4596864 YP_925531.1 CDS lysS NC_008699.1 4596343 4597893 R class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase complement(4596343..4597893) Nocardioides sp. JS614 4596865 YP_925532.1 CDS Noca_4348 NC_008699.1 4597924 4598406 R KEGG: sco:SCO3647 hypothetical protein; hypothetical protein complement(4597924..4598406) Nocardioides sp. JS614 4596866 YP_925533.1 CDS Noca_4349 NC_008699.1 4598438 4599919 D TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro06023 multidrug efflux transport protein; EmrB/QacA family drug resistance transporter 4598438..4599919 Nocardioides sp. JS614 4596867 YP_925534.1 CDS Noca_4350 NC_008699.1 4599986 4601017 R catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase complement(4599986..4601017) Nocardioides sp. JS614 4596868 YP_925535.1 CDS Noca_4351 NC_008699.1 4601185 4601655 D KEGG: nfa:nfa30040 hypothetical protein; hypothetical protein 4601185..4601655 Nocardioides sp. JS614 4596869 YP_925536.1 CDS Noca_4352 NC_008699.1 4601675 4602334 R PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: tfu:Tfu_2449 tRNA/rRNA methyltransferase; tRNA/rRNA methyltransferase SpoU complement(4601675..4602334) Nocardioides sp. JS614 4596870 YP_925537.1 CDS Noca_4353 NC_008699.1 4602433 4603176 D KEGG: pac:PPA2014 conserved membrane protein (DedA family); DedA family membrane protein 4602433..4603176 Nocardioides sp. JS614 4596871 YP_925538.1 CDS Noca_4354 NC_008699.1 4603225 4603764 R TIGRFAM: orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: fal:FRAAL1055 orotate phosphoribosyltransferase (OprT) (OPRTase); orotate phosphoribosyltransferase complement(4603225..4603764) Nocardioides sp. JS614 4596872 YP_925539.1 CDS Noca_4355 NC_008699.1 4603808 4604965 D PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase, class I and II; KEGG: sma:SAV4517 putative aminotransferase; succinyldiaminopimelate aminotransferase 4603808..4604965 Nocardioides sp. JS614 4596873 YP_925540.1 CDS Noca_4356 NC_008699.1 4605026 4606030 R hypothetical protein complement(4605026..4606030) Nocardioides sp. JS614 4596874 YP_925541.1 CDS Noca_4357 NC_008699.1 4606087 4608687 R PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: tfu:Tfu_0200 ATPase; ATPase complement(4606087..4608687) Nocardioides sp. JS614 4596875 YP_925542.1 CDS Noca_4358 NC_008699.1 4608818 4609612 D PFAM: pentapeptide repeat protein; KEGG: fra:Francci3_2300 pentapeptide repeat; pentapeptide repeat-containing protein 4608818..4609612 Nocardioides sp. JS614 4596876 YP_925543.1 CDS Noca_4359 NC_008699.1 4609703 4611187 D PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: mxa:MXAN_0340 sensory box histidine kinase; ATPase domain-containing protein 4609703..4611187 Nocardioides sp. JS614 4596877 YP_925544.1 CDS Noca_4360 NC_008699.1 4611218 4611652 R PFAM: regulatory protein, MerR; KEGG: fal:FRAAL6642 putative heat shock protein HspR; regulatory protein MerR complement(4611218..4611652) Nocardioides sp. JS614 4596878 YP_925545.1 CDS Noca_4361 NC_008699.1 4611654 4612844 R TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ central domain protein; heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: sco:SCO3669 molecular chaperone; chaperone protein DnaJ complement(4611654..4612844) Nocardioides sp. JS614 4596879 YP_925546.1 CDS Noca_4362 NC_008699.1 4612909 4613547 R PFAM: GrpE protein; KEGG: sco:SCO3670 heat chock protein; GrpE protein HSP-70 cofactor complement(4612909..4613547) Nocardioides sp. JS614 4596880 YP_925547.1 CDS Noca_4363 NC_008699.1 4613544 4615409 R TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70; KEGG: sma:SAV4484 putative heat shock protein hsp70; chaperone protein DnaK complement(4613544..4615409) Nocardioides sp. JS614 4596881 YP_925548.1 CDS Noca_4364 NC_008699.1 4615463 4616380 D TIGRFAM: aspartate racemase; PFAM: Asp/Glu racemase; KEGG: rfr:Rfer_3727 aspartate racemase; aspartate racemase 4615463..4616380 Nocardioides sp. JS614 4596882 YP_925549.1 CDS Noca_4365 NC_008699.1 4616422 4617312 D hypothetical protein 4616422..4617312 Nocardioides sp. JS614 4596883 YP_925550.1 CDS Noca_4366 NC_008699.1 4617340 4617837 R PFAM: regulatory protein, MarR; KEGG: atc:AGR_C_466 hypothetical protein; MarR family transcriptional regulator complement(4617340..4617837) Nocardioides sp. JS614 4596884 YP_925551.1 CDS Noca_4367 NC_008699.1 4617868 4618824 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: sco:SCO2646 integral membrane protein; hypothetical protein 4617868..4618824 Nocardioides sp. JS614 4596885 YP_925552.1 CDS Noca_4368 NC_008699.1 4618743 4619318 R hypothetical protein complement(4618743..4619318) Nocardioides sp. JS614 4596886 YP_925553.1 CDS Noca_4369 NC_008699.1 4619415 4619855 R KEGG: mmc:Mmcs_2007 hypothetical protein; hypothetical protein complement(4619415..4619855) Nocardioides sp. JS614 4596887 YP_925554.1 CDS Noca_4370 NC_008699.1 4619926 4620780 D KEGG: nfa:nfa29530 hypothetical protein; hypothetical protein 4619926..4620780 Nocardioides sp. JS614 4596888 YP_925555.1 CDS Noca_4371 NC_008699.1 4620780 4621931 D KEGG: nfa:nfa24570 hypothetical protein; hypothetical protein 4620780..4621931 Nocardioides sp. JS614 4596889 YP_925556.1 CDS Noca_4372 NC_008699.1 4621931 4622770 D PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro01522 short chain dehydrogenase; short chain dehydrogenase 4621931..4622770 Nocardioides sp. JS614 4596890 YP_925557.1 CDS Noca_4373 NC_008699.1 4622832 4623992 D KEGG: nfa:nfa24590 hypothetical protein; hypothetical protein 4622832..4623992 Nocardioides sp. JS614 4596891 YP_925558.1 CDS Noca_4374 NC_008699.1 4624060 4624794 D KEGG: sco:SCO0378 conserved secreted protein; hypothetical protein 4624060..4624794 Nocardioides sp. JS614 4596892 YP_925559.1 CDS Noca_4375 NC_008699.1 4624876 4626270 R PFAM: cytochrome P450; KEGG: mtc:MT0342 P450 heme-thiolate protein; cytochrome P450 complement(4624876..4626270) Nocardioides sp. JS614 4596893 YP_925560.1 CDS Noca_4376 NC_008699.1 4626336 4627088 R KEGG: tfu:Tfu_2504 putative integral membrane protein; putative integral membrane protein complement(4626336..4627088) Nocardioides sp. JS614 4596894 YP_925561.1 CDS Noca_4377 NC_008699.1 4627199 4628110 R PFAM: Sucraseferredoxin family protein; KEGG: rha:RHA1_ro03455 hypothetical protein; sucraseferredoxin family protein complement(4627199..4628110) Nocardioides sp. JS614 4596895 YP_925562.1 CDS Noca_4378 NC_008699.1 4628107 4629318 R PFAM: Cupin 4 family protein; KEGG: mmc:Mmcs_5250 cupin 4; cupin 4 family protein complement(4628107..4629318) Nocardioides sp. JS614 4596896 YP_925563.1 CDS Noca_4379 NC_008699.1 4629319 4629543 R KEGG: pfa:PFI1205c hypothetical protein; hypothetical protein complement(4629319..4629543) Nocardioides sp. JS614 4596897 YP_925564.1 CDS Noca_4380 NC_008699.1 4629589 4630443 R PFAM: Sucraseferredoxin family protein; KEGG: nfa:nfa9080 hypothetical protein; sucraseferredoxin family protein complement(4629589..4630443) Nocardioides sp. JS614 4596898 YP_925565.1 CDS Noca_4381 NC_008699.1 4630577 4631722 D PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cef:CE1938 putative coenzyme PQQ synthesis protein; radical SAM domain-containing protein 4630577..4631722 Nocardioides sp. JS614 4596899 YP_925566.1 CDS Noca_4382 NC_008699.1 4631768 4634788 R PFAM: regulatory protein, LuxR; Bacterio-opsin activator, HTH domain protein; Tetratricopeptide TPR_4; KEGG: sma:SAV2729 LuxR-family transcriptional regulator; regulatory protein LuxR complement(4631768..4634788) Nocardioides sp. JS614 4596900 YP_925567.1 CDS Noca_4383 NC_008699.1 4635033 4636031 R PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: ade:Adeh_2267 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(4635033..4636031) Nocardioides sp. JS614 4596901 YP_925568.1 CDS Noca_4384 NC_008699.1 4636163 4636417 D KEGG: ret:RHE_CH02031 putative gualylate cyclase protein; putative gualylate cyclase protein 4636163..4636417 Nocardioides sp. JS614 4596902 YP_925569.1 CDS Noca_4385 NC_008699.1 4636438 4637613 R catalyzes the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase complement(4636438..4637613) Nocardioides sp. JS614 4596903 YP_925570.1 CDS Noca_4386 NC_008699.1 4637598 4638890 R catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate; N-formimino-L-glutamate deiminase complement(4637598..4638890) Nocardioides sp. JS614 4596904 YP_925571.1 CDS Noca_4387 NC_008699.1 4638887 4640071 R allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase complement(4638887..4640071) Nocardioides sp. JS614 4596905 YP_925572.1 CDS Noca_4388 NC_008699.1 4640094 4640729 D PFAM: nitroreductase; KEGG: dde:Dde_1353 nitroreductase family protein; nitroreductase 4640094..4640729 Nocardioides sp. JS614 4596906 YP_925573.1 CDS Noca_4389 NC_008699.1 4640806 4642128 D PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: mxa:MXAN_2289 peptidase, M20E (Gly-X carboxypeptidase) subfamily; hypothetical protein 4640806..4642128 Nocardioides sp. JS614 4596907 YP_925574.1 CDS Noca_4390 NC_008699.1 4642128 4643603 D PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro00430 multidrug resistance transporter, MFS superfamily; major facilitator transporter 4642128..4643603 Nocardioides sp. JS614 4596908 YP_925575.1 CDS Noca_4391 NC_008699.1 4643689 4644255 D KEGG: nfa:nfa29360 hypothetical protein; hypothetical protein 4643689..4644255 Nocardioides sp. JS614 4596909 YP_925576.1 CDS Noca_4392 NC_008699.1 4644252 4645097 D converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase 4644252..4645097 Nocardioides sp. JS614 4596910 YP_925577.1 CDS Noca_4393 NC_008699.1 4645202 4646293 D PFAM: HpcH/HpaI aldolase; KEGG: fra:Francci3_2805 HpcH/HpaI aldolase; HpcH/HpaI aldolase 4645202..4646293 Nocardioides sp. JS614 4596911 YP_925578.1 CDS Noca_4394 NC_008699.1 4646290 4647168 D PFAM: HpcH/HpaI aldolase; KEGG: fal:FRAAL5522 citrate lyase beta subunit; citryl-CoA lyase 4646290..4647168 Nocardioides sp. JS614 4596912 YP_925579.1 CDS Noca_4395 NC_008699.1 4647247 4647390 D KEGG: rha:RHA1_ro05133 hypothetical protein; hypothetical protein 4647247..4647390 Nocardioides sp. JS614 4596913 YP_925580.1 CDS Noca_4396 NC_008699.1 4647455 4648549 R PFAM: peptidase M48, Ste24p; KEGG: tfu:Tfu_2172 hypothetical protein; peptidase M48, Ste24p complement(4647455..4648549) Nocardioides sp. JS614 4596914 YP_925581.1 CDS Noca_4397 NC_008699.1 4648593 4650260 R catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase complement(4648593..4650260) Nocardioides sp. JS614 4596915 YP_925582.1 CDS Noca_4398 NC_008699.1 4650257 4651858 R catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase complement(4650257..4651858) Nocardioides sp. JS614 4596916 YP_925583.1 CDS Noca_4399 NC_008699.1 4652179 4653459 D KEGG: rxy:Rxyl_0139 LigA; hypothetical protein 4652179..4653459 Nocardioides sp. JS614 4596917 YP_925584.1 CDS Noca_4400 NC_008699.1 4653530 4654723 D PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro06491 transporter, MFS superfamily; major facilitator transporter 4653530..4654723 Nocardioides sp. JS614 4596918 YP_925585.1 CDS Noca_4401 NC_008699.1 4654876 4655232 D KEGG: rha:RHA1_ro05135 hypothetical protein; hypothetical protein 4654876..4655232 Nocardioides sp. JS614 4596919 YP_925586.1 CDS Noca_4402 NC_008699.1 4655243 4656013 D PFAM: regulatory proteins, IclR; KEGG: lxx:Lxx22150 transcriptional regulator, IclR family; regulatory proteins IclR 4655243..4656013 Nocardioides sp. JS614 4596920 YP_925587.1 CDS Noca_4403 NC_008699.1 4656072 4658501 D KEGG: mxa:MXAN_3638 peptidase, M19 family; hypothetical protein 4656072..4658501 Nocardioides sp. JS614 4596921 YP_925588.1 CDS Noca_4404 NC_008699.1 4658649 4661750 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: mpa:MAP3831c hypothetical protein; hypothetical protein 4658649..4661750 Nocardioides sp. JS614 4596922 YP_925589.1 CDS Noca_4405 NC_008699.1 4661916 4662872 D hypothetical protein 4661916..4662872 Nocardioides sp. JS614 4596923 YP_925590.1 CDS Noca_4406 NC_008699.1 4662854 4663132 R KEGG: cdi:DIP1013 hypothetical protein; hypothetical protein complement(4662854..4663132) Nocardioides sp. JS614 4596924 YP_925591.1 CDS Noca_4407 NC_008699.1 4663143 4664984 R TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: pac:PPA2193 sodium:solute symporter; SSS family solute/sodium (Na+) symporter complement(4663143..4664984) Nocardioides sp. JS614 4596925 YP_925592.1 CDS Noca_4408 NC_008699.1 4665092 4665586 D KEGG: fra:Francci3_2434 hypothetical protein; hypothetical protein 4665092..4665586 Nocardioides sp. JS614 4596926 YP_925593.1 CDS Noca_4409 NC_008699.1 4665679 4666503 D KEGG: rha:RHA1_ro02601 hypothetical protein; hypothetical protein 4665679..4666503 Nocardioides sp. JS614 4596927 YP_925594.1 CDS Noca_4410 NC_008699.1 4666535 4666690 D hypothetical protein 4666535..4666690 Nocardioides sp. JS614 4596928 YP_925595.1 CDS Noca_4411 NC_008699.1 4666773 4667135 R PFAM: FAD-binding 9, siderophore-interacting domain protein; KEGG: cgb:cg0767 siderophore-interacting protein; FAD-binding 9, siderophore-interacting domain-containing protein complement(4666773..4667135) Nocardioides sp. JS614 4596929 YP_925596.1 CDS dcd NC_008699.1 4667163 4667738 R Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase complement(4667163..4667738) Nocardioides sp. JS614 4596930 YP_925597.1 CDS Noca_4413 NC_008699.1 4667803 4668603 D PFAM: lipolytic enzyme, G-D-S-L family; KEGG: lxx:Lxx11940 hypothetical protein; GDSL family lipase 4667803..4668603 Nocardioides sp. JS614 4596931 YP_925598.1 CDS Noca_4414 NC_008699.1 4669623 4670933 D KEGG: bps:BPSS2166 hypothetical protein; hypothetical protein 4669623..4670933 Nocardioides sp. JS614 4596933 YP_925599.1 CDS Noca_4415 NC_008699.1 4670933 4672030 D hypothetical protein 4670933..4672030 Nocardioides sp. JS614 4596934 YP_925600.1 CDS Noca_4416 NC_008699.1 4672209 4672850 D KEGG: nfa:nfa48830 hypothetical protein; hypothetical protein 4672209..4672850 Nocardioides sp. JS614 4596935 YP_925601.1 CDS Noca_4417 NC_008699.1 4672868 4673320 R PFAM: nuclear transport factor 2; KEGG: mpa:MAP0541c hypothetical protein; nuclear transport factor 2 complement(4672868..4673320) Nocardioides sp. JS614 4596936 YP_925602.1 CDS Noca_4418 NC_008699.1 4673438 4674556 D hypothetical protein 4673438..4674556 Nocardioides sp. JS614 4596937 YP_925603.1 CDS Noca_4419 NC_008699.1 4674566 4675024 R TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: rha:RHA1_ro04161 possible transcriptional regulator; BadM/Rrf2 family transcriptional regulator complement(4674566..4675024) Nocardioides sp. JS614 4596938 YP_925604.1 CDS Noca_4420 NC_008699.1 4675115 4676011 R PFAM: protein of unknown function DUF81; KEGG: tfu:Tfu_1694 hypothetical protein; hypothetical protein complement(4675115..4676011) Nocardioides sp. JS614 4596939 YP_925605.1 CDS Noca_4421 NC_008699.1 4676265 4676774 D KEGG: fra:Francci3_3736 conserved hypothetical protein; hypothetical protein 4676265..4676774 Nocardioides sp. JS614 4596940 YP_925606.1 CDS Noca_4422 NC_008699.1 4676771 4677484 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sma:SAV5250 two-component system response regulator; response regulator receiver 4676771..4677484 Nocardioides sp. JS614 4596941 YP_925607.1 CDS Noca_4423 NC_008699.1 4677492 4678841 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: sma:SAV5251 two-component system sensor kinase; ATPase domain-containing protein 4677492..4678841 Nocardioides sp. JS614 4596942 YP_925608.1 CDS Noca_4424 NC_008699.1 4678915 4679184 D KEGG: mlo:mlr0587 hypothetical glycine-rich protein; hypothetical protein 4678915..4679184 Nocardioides sp. JS614 4596943 YP_925609.1 CDS Noca_4425 NC_008699.1 4679181 4680110 D PFAM: ApbE family lipoprotein; KEGG: fal:FRAAL3949 putative thiamine biosynthesis lipoprotein, ApbE-like; ApbE family lipoprotein 4679181..4680110 Nocardioides sp. JS614 4596944 YP_925610.1 CDS Noca_4426 NC_008699.1 4680107 4680724 D KEGG: fal:FRAAL3950 hypothetical protein; putative membrane protein; hypothetical protein 4680107..4680724 Nocardioides sp. JS614 4596945 YP_925611.1 CDS Noca_4427 NC_008699.1 4680721 4681959 D PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: sco:SCP1.160c putative oxidoreductase; respiratory-chain NADH dehydrogenase domain-containing protein 4680721..4681959 Nocardioides sp. JS614 4596946 YP_925612.1 CDS Noca_4428 NC_008699.1 4681956 4682147 D KEGG: sma:SAV5486 oxidoreductase; oxidoreductase 4681956..4682147 Nocardioides sp. JS614 4596947 YP_925613.1 CDS Noca_4429 NC_008699.1 4682576 4684441 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: sma:SAV4390 putative acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 4682576..4684441 Nocardioides sp. JS614 4596948 YP_925614.1 CDS Noca_4430 NC_008699.1 4684534 4684764 D hypothetical protein 4684534..4684764 Nocardioides sp. JS614 4596949 YP_925615.1 CDS Noca_4431 NC_008699.1 4684775 4685656 R specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein complement(4684775..4685656) Nocardioides sp. JS614 4596950 YP_925616.1 CDS Noca_4432 NC_008699.1 4685727 4686329 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: xcv:XCV3263 L-lysine exporter family protein; lysine exporter protein LysE/YggA 4685727..4686329 Nocardioides sp. JS614 4596951 YP_925617.1 CDS Noca_4433 NC_008699.1 4686340 4687176 D KEGG: mbo:Mb3126c hypothetical protein; hypothetical protein 4686340..4687176 Nocardioides sp. JS614 4596952 YP_925618.1 CDS Noca_4434 NC_008699.1 4687184 4688134 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mbo:Mb0069 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 4687184..4688134 Nocardioides sp. JS614 4596953 YP_925619.1 CDS Noca_4435 NC_008699.1 4688125 4689570 R KEGG: nfa:nfa44140 hypothetical protein; hypothetical protein complement(4688125..4689570) Nocardioides sp. JS614 4596954 YP_925620.1 CDS Noca_4436 NC_008699.1 4689650 4690474 D PFAM: aldo/keto reductase; KEGG: ecj:JW1403 predicted oxidoreductase, NAD(P)-binding; aldo/keto reductase 4689650..4690474 Nocardioides sp. JS614 4596955 YP_925621.1 CDS Noca_4437 NC_008699.1 4690478 4691194 R KEGG: fal:FRAAL4052 hypothetical membrane protein; hypothetical protein complement(4690478..4691194) Nocardioides sp. JS614 4596956 YP_925622.1 CDS Noca_4438 NC_008699.1 4691218 4692912 D catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 4691218..4692912 Nocardioides sp. JS614 4596957 YP_925623.1 CDS Noca_4439 NC_008699.1 4692917 4693330 R hypothetical protein complement(4692917..4693330) Nocardioides sp. JS614 4596958 YP_925624.1 CDS Noca_4440 NC_008699.1 4693350 4694141 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fal:FRAAL0729 high-affinity branched-chain amino acid transport protein (ABC superfamily, atp_bind); ABC transporter-like protein complement(4693350..4694141) Nocardioides sp. JS614 4596959 YP_925625.1 CDS Noca_4441 NC_008699.1 4694141 4695952 R PFAM: inner-membrane translocator; ABC transporter related; KEGG: bme:BMEII0874 high-affinity branched-chain amino acid transport system permease protein LivH / high-affinity branched-chain amino acid transport ATP-binding protein LivG; ABC transporter-like protein complement(4694141..4695952) Nocardioides sp. JS614 4596960 YP_925626.1 CDS Noca_4442 NC_008699.1 4695949 4696833 R PFAM: inner-membrane translocator; KEGG: gsu:GSU2006 branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator complement(4695949..4696833) Nocardioides sp. JS614 4596961 YP_925627.1 CDS Noca_4443 NC_008699.1 4696833 4698074 R PFAM: Extracellular ligand-binding receptor; KEGG: hwa:HQ3182A ABC-type branched-chain amino acid transport systems, substrate-binding protein; extracellular ligand-binding receptor complement(4696833..4698074) Nocardioides sp. JS614 4596962 YP_925628.1 CDS Noca_4444 NC_008699.1 4698265 4699836 D PFAM: FAD dependent oxidoreductase; KEGG: ana:all3744 probable phytoene dehydrogenase; FAD dependent oxidoreductase 4698265..4699836 Nocardioides sp. JS614 4596963 YP_925629.1 CDS Noca_4445 NC_008699.1 4699868 4700809 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO3956 putative ABC transporter ATP-binding protein; ABC transporter-like protein 4699868..4700809 Nocardioides sp. JS614 4596964 YP_925630.1 CDS Noca_4446 NC_008699.1 4700793 4701704 D KEGG: sco:SCO3957 possible integral membrane protein; putative integral membrane protein 4700793..4701704 Nocardioides sp. JS614 4596965 YP_925631.1 CDS Noca_4447 NC_008699.1 4701704 4702615 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV4248 putative ABC transporter ATP-binding protein; ABC transporter-like protein 4701704..4702615 Nocardioides sp. JS614 4596966 YP_925632.1 CDS Noca_4448 NC_008699.1 4702612 4703331 D KEGG: sco:SCO3959 possible integral membrane protein; putative integral membrane protein 4702612..4703331 Nocardioides sp. JS614 4596967 YP_925633.1 CDS Noca_4449 NC_008699.1 4703518 4704099 D hypothetical protein 4703518..4704099 Nocardioides sp. JS614 4596968 YP_925634.1 CDS Noca_4450 NC_008699.1 4704273 4705175 R PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: lxx:Lxx06230 RNA polymerase, sigma factor; sigma-70 region 4 domain-containing protein complement(4704273..4705175) Nocardioides sp. JS614 4596969 YP_925635.1 CDS Noca_4451 NC_008699.1 4705385 4705849 R PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: rha:RHA1_ro06715 hypothetical protein; activator of Hsp90 ATPase 1 family protein complement(4705385..4705849) Nocardioides sp. JS614 4596970 YP_925636.1 CDS Noca_4452 NC_008699.1 4705971 4706804 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: hch:HCH_03658 SAM-dependent methyltransferase; type 11 methyltransferase 4705971..4706804 Nocardioides sp. JS614 4596971 YP_925637.1 CDS Noca_4453 NC_008699.1 4707091 4708374 R PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: gbe:GbCGDNIH1_1185 dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; dehydrogenase catalytic domain-containing protein complement(4707091..4708374) Nocardioides sp. JS614 4596972 YP_925638.1 CDS Noca_4454 NC_008699.1 4708376 4710556 R PFAM: dehydrogenase, E1 component; Transketolase, central region; Transketolase domain protein; KEGG: bme:BMEII0061 2-oxoisovalerate dehydrogenase alpha and beta subunit; dehydrogenase, E1 component complement(4708376..4710556) Nocardioides sp. JS614 4596973 YP_925639.1 CDS Noca_4455 NC_008699.1 4710700 4711200 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cps:CPS_3057 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase 4710700..4711200 Nocardioides sp. JS614 4596974 YP_925640.1 CDS Noca_4456 NC_008699.1 4711193 4711834 D PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: bxe:Bxe_C0293 transcriptional regulator, GntR family; GntR family transcriptional regulator 4711193..4711834 Nocardioides sp. JS614 4596975 YP_925641.1 CDS Noca_4457 NC_008699.1 4711831 4712283 D PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: mag:amb1303 aerobic-type carbon monoxide dehydrogenase small subunit CoxS/CutS homolog; 2Fe-2S iron-sulfur cluster binding domain-containing protein 4711831..4712283 Nocardioides sp. JS614 4596976 YP_925642.1 CDS Noca_4458 NC_008699.1 4712280 4714292 D PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: bja:blr6047 putative oxidoreductase protein; aldehyde oxidase and xanthine dehydrogenase 4712280..4714292 Nocardioides sp. JS614 4596977 YP_925643.1 CDS Noca_4459 NC_008699.1 4714357 4714989 D KEGG: rha:RHA1_ro03794 hypothetical protein; hypothetical protein 4714357..4714989 Nocardioides sp. JS614 4596978 YP_925644.1 CDS Noca_4460 NC_008699.1 4715048 4716007 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rha:RHA1_ro01058 NADPH:quinone reductase; alcohol dehydrogenase 4715048..4716007 Nocardioides sp. JS614 4596979 YP_925645.1 CDS Noca_4461 NC_008699.1 4716046 4716387 D KEGG: nfa:nfa44070 hypothetical protein; hypothetical protein 4716046..4716387 Nocardioides sp. JS614 4596980 YP_925646.1 CDS Noca_4462 NC_008699.1 4716394 4717002 R PFAM: bifunctional deaminase-reductase domain protein; KEGG: cvi:CV3295 hypothetical protein; deaminase-reductase domain-containing protein complement(4716394..4717002) Nocardioides sp. JS614 4596981 YP_925647.1 CDS Noca_4463 NC_008699.1 4717089 4718438 D PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV4232 hypothetical protein; major facilitator transporter 4717089..4718438 Nocardioides sp. JS614 4596982 YP_925648.1 CDS Noca_4464 NC_008699.1 4718442 4718675 R KEGG: rpc:RPC_0104 succinate-semialdehyde dehydrogenase (NAD(P)+); succinate-semialdehyde dehydrogenase (NAD(P)+) complement(4718442..4718675) Nocardioides sp. JS614 4596983 YP_925649.1 CDS Noca_4465 NC_008699.1 4718706 4719881 R PFAM: NADH-ubiquinone oxidoreductase, chain 49kDa; KEGG: mbo:Mb0090 possible formate hydrogenase HycQ (FHL); NADH-ubiquinone oxidoreductase, chain 49kDa complement(4718706..4719881) Nocardioides sp. JS614 4596984 YP_925650.1 CDS Noca_4466 NC_008699.1 4720175 4721461 R PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: mtc:MT0093 NADH-ubiquinone oxidoreductase, putative; NADH dehydrogenase (quinone) complement(4720175..4721461) Nocardioides sp. JS614 4596985 YP_925651.1 CDS Noca_4467 NC_008699.1 4721605 4722267 R KEGG: mbo:Mb0088 possible hydrogenase HycP; putative hydrogenase HycP complement(4721605..4722267) Nocardioides sp. JS614 4596986 YP_925652.1 CDS Noca_4468 NC_008699.1 4722267 4723217 R KEGG: mbo:Mb0087 possible formate hydrogenlyase HycD (FHL); putative formate hydrogenlyase HycD (FHL) complement(4722267..4723217) Nocardioides sp. JS614 4596987 YP_925653.1 CDS Noca_4469 NC_008699.1 4723214 4725208 R PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: mtc:MT0090 NADH-ubiquinone oxidoreductase, putative; NADH dehydrogenase (quinone) complement(4723214..4725208) Nocardioides sp. JS614 4596988 YP_925654.1 CDS Noca_4470 NC_008699.1 4725228 4725716 R PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: mbo:Mb0085 probable oxidoreductase; NADH ubiquinone oxidoreductase, 20 kDa subunit complement(4725228..4725716) Nocardioides sp. JS614 4596989 YP_925655.1 CDS Noca_4471 NC_008699.1 4725713 4726045 R PFAM: regulatory protein, ArsR; KEGG: tfu:Tfu_0872 regulatory protein, ArsR; ArsR family transcriptional regulator complement(4725713..4726045) Nocardioides sp. JS614 4596990 YP_925656.1 CDS Noca_4472 NC_008699.1 4726167 4728020 D catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP; phosphoenolpyruvate carboxykinase 4726167..4728020 Nocardioides sp. JS614 4596991 YP_925657.1 CDS Noca_4473 NC_008699.1 4728175 4729635 R PFAM: aldehyde dehydrogenase; KEGG: rpc:RPC_0104 succinate-semialdehyde dehydrogenase (NAD(P)+); succinate semialdehyde dehydrogenase complement(4728175..4729635) Nocardioides sp. JS614 4596992 YP_925658.1 CDS Noca_4474 NC_008699.1 4729658 4730905 R PFAM: peptidase M24; KEGG: hma:rrnB0212 aminopeptidase; peptidase M24 complement(4729658..4730905) Nocardioides sp. JS614 4596993 YP_925659.1 CDS Noca_4475 NC_008699.1 4730905 4731861 R PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: pae:PA2199 probable dehydrogenase; 6-phosphogluconate dehydrogenase complement(4730905..4731861) Nocardioides sp. JS614 4596994 YP_925660.1 CDS Noca_4476 NC_008699.1 4731861 4732991 R PFAM: protein of unknown function DUF1100, hydrolase family protein; KEGG: bcn:Bcen_5609 hypothetical protein; hypothetical protein complement(4731861..4732991) Nocardioides sp. JS614 4596995 YP_925661.1 CDS Noca_4477 NC_008699.1 4733127 4734005 D KEGG: pol:Bpro_0362 extracellular solute-binding protein, family 3; extracellular solute-binding protein 4733127..4734005 Nocardioides sp. JS614 4596996 YP_925662.1 CDS Noca_4478 NC_008699.1 4734002 4735198 D PFAM: major facilitator superfamily MFS_1; KEGG: dar:Daro_1096 major facilitator superfamily MFS_1; major facilitator transporter 4734002..4735198 Nocardioides sp. JS614 4596997 YP_925663.1 CDS Noca_4479 NC_008699.1 4735200 4736228 D PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: reu:Reut_B5848 periplasmic binding protein/LacI transcriptional regulator; LacI family transcriptional regulator 4735200..4736228 Nocardioides sp. JS614 4596998 YP_925664.1 CDS Noca_4480 NC_008699.1 4736350 4737579 R PFAM: fatty acid desaturase; KEGG: fal:FRAAL6454 linoleoyl-CoA desaturase (delta(6)-desaturase); fatty acid desaturase complement(4736350..4737579) Nocardioides sp. JS614 4596999 YP_925665.1 CDS Noca_4481 NC_008699.1 4737601 4738755 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: nfa:nfa46020 putative oxidoreductase; oxidoreductase FAD-binding subunit complement(4737601..4738755) Nocardioides sp. JS614 4597000 YP_925666.1 CDS Noca_4482 NC_008699.1 4738825 4739994 D KEGG: fra:Francci3_3797 hypothetical protein; hypothetical protein 4738825..4739994 Nocardioides sp. JS614 4597001 YP_925667.1 CDS Noca_4483 NC_008699.1 4740064 4740849 R TIGRFAM: glucosamine-6-phosphate isomerase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: rha:RHA1_ro01547 glucosamine-6-phosphate deaminase; glucosamine-6-phosphate isomerase complement(4740064..4740849) Nocardioides sp. JS614 4597002 YP_925668.1 CDS Noca_4484 NC_008699.1 4740849 4741805 R PFAM: amidohydrolase; KEGG: rxy:Rxyl_0658 N-acetylglucosamine-6-phosphate deacetylase; N-acetylglucosamine 6-phosphate deacetylase complement(4740849..4741805) Nocardioides sp. JS614 4597003 YP_925669.1 CDS Noca_4485 NC_008699.1 4741802 4742719 R PFAM: ROK family protein; KEGG: blo:BL1341 possible sugar kinase; ROK family protein complement(4741802..4742719) Nocardioides sp. JS614 4597004 YP_925670.1 CDS Noca_4486 NC_008699.1 4742716 4744122 R PFAM: glycoside hydrolase, family 3 domain protein; KEGG: sco:SCO5235 sugar hydrolase; glycoside hydrolase family protein complement(4742716..4744122) Nocardioides sp. JS614 4597005 YP_925671.1 CDS Noca_4487 NC_008699.1 4744119 4744304 R KEGG: sco:SCO0533 putative sugar transporter membrane protein; putative sugar transporter membrane protein complement(4744119..4744304) Nocardioides sp. JS614 4597006 YP_925672.1 CDS Noca_4488 NC_008699.1 4744508 4745632 R PFAM: ROK family protein; KEGG: blo:BL1342 NagC/XylR-type transciptional regulator; ROK family protein complement(4744508..4745632) Nocardioides sp. JS614 4597007 YP_925673.1 CDS Noca_4489 NC_008699.1 4745816 4746712 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: fal:FRAAL3261 putative membrane transport protein (cation efflux); cation diffusion facilitator family transporter complement(4745816..4746712) Nocardioides sp. JS614 4597008 YP_925674.1 CDS Noca_4490 NC_008699.1 4746809 4747708 D PFAM: lipolytic enzyme, G-D-S-L family; KEGG: sco:SCO7513 secreted hydrolase; GDSL family lipase 4746809..4747708 Nocardioides sp. JS614 4597009 YP_925675.1 CDS Noca_4491 NC_008699.1 4747691 4749217 R PFAM: Amidohydrolase 3; KEGG: pac:PPA0940 conserved protein, putative metal-dependent hydrolase; amidohydrolase 3 complement(4747691..4749217) Nocardioides sp. JS614 4597010 YP_925676.1 CDS Noca_4492 NC_008699.1 4749317 4750780 R TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bbr:BB2411 putative transmembrane efflux protein; EmrB/QacA family drug resistance transporter complement(4749317..4750780) Nocardioides sp. JS614 4597011 YP_925677.1 CDS Noca_4493 NC_008699.1 4750871 4752544 R TIGRFAM: phenylacetic acid degradation protein paaN; PFAM: aldehyde dehydrogenase; KEGG: reu:Reut_B3740 phenylacetic acid degradation protein paaN2; phenylacetic acid degradation protein paaN complement(4750871..4752544) Nocardioides sp. JS614 4597012 YP_925678.1 CDS Noca_4494 NC_008699.1 4752682 4753326 D hypothetical protein 4752682..4753326 Nocardioides sp. JS614 4597013 YP_925679.1 CDS Noca_4495 NC_008699.1 4753369 4753941 D PFAM: stress protein; KEGG: rha:RHA1_ro02442 stress related protein; stress protein 4753369..4753941 Nocardioides sp. JS614 4597014 YP_925680.1 CDS Noca_4496 NC_008699.1 4754066 4755532 R PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: tfu:Tfu_0454 tyrosine protein kinase:serine/threonine protein kinase; protein kinase complement(4754066..4755532) Nocardioides sp. JS614 4597015 YP_925681.1 CDS Noca_4497 NC_008699.1 4755620 4756564 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tfu:Tfu_1436 ABC-type multidrug transport system ATPase component; ABC transporter-like protein 4755620..4756564 Nocardioides sp. JS614 4597016 YP_925682.1 CDS Noca_4498 NC_008699.1 4756561 4757379 D KEGG: fal:FRAAL6618 hypothetical protein; hypothetical protein 4756561..4757379 Nocardioides sp. JS614 4597017 YP_925683.1 CDS Noca_4499 NC_008699.1 4757441 4758007 D PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: tfu:Tfu_0455 sigma subunit sigma24 -like protein; sigma-70 region 2 domain-containing protein 4757441..4758007 Nocardioides sp. JS614 4597018 YP_925684.1 CDS Noca_4500 NC_008699.1 4758175 4759596 D PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: sma:SAV3952 metallopeptidase; peptidase M1, membrane alanine aminopeptidase 4758175..4759596 Nocardioides sp. JS614 4597019 YP_925685.1 CDS Noca_4501 NC_008699.1 4759656 4760648 D PFAM: NAD-dependent epimerase/dehydratase; KEGG: bja:blr6721 putative reductase; NAD-dependent epimerase/dehydratase 4759656..4760648 Nocardioides sp. JS614 4597020 YP_925686.1 CDS Noca_4502 NC_008699.1 4760739 4762232 D PFAM: carboxyl transferase; Enoyl-CoA hydratase/isomerase; KEGG: rha:RHA1_ro02935 acetyl-CoA carboxylase carboxyl transferase subunit; carboxyl transferase 4760739..4762232 Nocardioides sp. JS614 4597021 YP_925687.1 CDS Noca_4503 NC_008699.1 4762375 4763178 D KEGG: rha:RHA1_ro06351 reductase; reductase 4762375..4763178 Nocardioides sp. JS614 4597022 YP_925688.1 CDS Noca_4504 NC_008699.1 4763206 4764087 D PFAM: Patatin; KEGG: rha:RHA1_ro06546 hypothetical protein; patatin 4763206..4764087 Nocardioides sp. JS614 4597023 YP_925689.1 CDS Noca_4505 NC_008699.1 4764109 4765080 R KEGG: nfa:nfa7310 hypothetical protein; hypothetical protein complement(4764109..4765080) Nocardioides sp. JS614 4597024 YP_925690.1 CDS Noca_4506 NC_008699.1 4765096 4766382 D TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: bce:BC2248 acetylornithine deacetylase; acetylornithine deacetylase 4765096..4766382 Nocardioides sp. JS614 4597025 YP_925691.1 CDS Noca_4507 NC_008699.1 4766438 4767862 R PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: sco:SCO3815 putative dihydrolipoamide acyltransferase component; dehydrogenase catalytic domain-containing protein complement(4766438..4767862) Nocardioides sp. JS614 4597026 YP_925692.1 CDS Noca_4508 NC_008699.1 4767874 4768854 R PFAM: Transketolase, central region; Transketolase domain protein; KEGG: sco:SCO3816 putative branched-chain alpha keto acid dehydrogenase E1 beta subunit; transketolase, central region complement(4767874..4768854) Nocardioides sp. JS614 4597027 YP_925693.1 CDS Noca_4509 NC_008699.1 4768856 4770052 R PFAM: dehydrogenase, E1 component; KEGG: tfu:Tfu_0180 pyruvate dehydrogenase (lipoamide); pyruvate dehydrogenase complement(4768856..4770052) Nocardioides sp. JS614 4597028 YP_925694.1 CDS Noca_4510 NC_008699.1 4770234 4770977 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: sco:SCO6751 putative efflux protein; cation diffusion facilitator family transporter complement(4770234..4770977) Nocardioides sp. JS614 4597029 YP_925695.1 CDS Noca_4511 NC_008699.1 4771246 4772271 D PFAM: glycoside hydrolase, family 43; KEGG: dge:Dgeo_2723 glycoside hydrolase, family 43; glycoside hydrolase family protein 4771246..4772271 Nocardioides sp. JS614 4597030 YP_925696.1 CDS Noca_4512 NC_008699.1 4772384 4773358 R KEGG: rha:RHA1_ro06020 possible glutathione S-transferase; putative glutathione S-transferase complement(4772384..4773358) Nocardioides sp. JS614 4597031 YP_925697.1 CDS Noca_4513 NC_008699.1 4773409 4774575 R PFAM: glycoside hydrolase, family 3 domain protein; KEGG: fal:FRAAL0843 putative beta-N-acetylhexosaminidase; glycoside hydrolase family 3 protein complement(4773409..4774575) Nocardioides sp. JS614 4597032 YP_925698.1 CDS Noca_4514 NC_008699.1 4774595 4775665 R TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase, class I and II; KEGG: sma:SAV4261 putative histidinol-phosphate aminotransferase; aminotransferase complement(4774595..4775665) Nocardioides sp. JS614 4597033 YP_925699.1 CDS Noca_4515 NC_008699.1 4775675 4776229 R hypothetical protein complement(4775675..4776229) Nocardioides sp. JS614 4597034 YP_925700.1 CDS Noca_4516 NC_008699.1 4776420 4776827 D PFAM: membrane protein of unknown function; KEGG: sma:SAV4271 hypothetical protein; membrane protein 4776420..4776827 Nocardioides sp. JS614 4597035 YP_925701.1 CDS Noca_4517 NC_008699.1 4776831 4777421 D PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: tfu:Tfu_2341 protein-tyrosine-phosphatase; protein tyrosine phosphatase 4776831..4777421 Nocardioides sp. JS614 4597036 YP_925702.1 CDS Noca_4518 NC_008699.1 4777418 4778296 D PFAM: aminoglycoside phosphotransferase; fructosamine kinase; KEGG: tfu:Tfu_2340 hypothetical protein; aminoglycoside phosphotransferase 4777418..4778296 Nocardioides sp. JS614 4597037 YP_925703.1 CDS Noca_4519 NC_008699.1 4778373 4779077 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: nfa:nfa49640 putative two-component system response regulator; response regulator receiver 4778373..4779077 Nocardioides sp. JS614 4597038 YP_925704.1 CDS Noca_4520 NC_008699.1 4779074 4780489 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rha:RHA1_ro05623 sensor kinase, two-component system; ATPase domain-containing protein 4779074..4780489 Nocardioides sp. JS614 4597039 YP_925705.1 CDS Noca_4521 NC_008699.1 4780510 4781049 D hypothetical protein 4780510..4781049 Nocardioides sp. JS614 4597040 YP_925706.1 CDS Noca_4522 NC_008699.1 4781068 4781922 D KEGG: nfa:nfa5300 hypothetical protein; hypothetical protein 4781068..4781922 Nocardioides sp. JS614 4597041 YP_925707.1 CDS Noca_4523 NC_008699.1 4781945 4783186 D TIGRFAM: ornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: mmc:Mmcs_0992 ornithine aminotransferase; aminotransferase 4781945..4783186 Nocardioides sp. JS614 4597042 YP_925708.1 CDS Noca_4524 NC_008699.1 4783250 4785103 R KEGG: bps:BPSS1911 hypothetical protein; hypothetical protein complement(4783250..4785103) Nocardioides sp. JS614 4597043 YP_925709.1 CDS Noca_4525 NC_008699.1 4785581 4786810 R PFAM: transposase IS116/IS110/IS902 family protein; KEGG: chy:CHY_2508 ISChy2, transposase; transposase IS116/IS110/IS902 family protein complement(4785581..4786810) Nocardioides sp. JS614 4597044 YP_925710.1 CDS Noca_4526 NC_008699.1 4786945 4788393 R catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase complement(4786945..4788393) Nocardioides sp. JS614 4597045 YP_925711.1 CDS Noca_4527 NC_008699.1 4788425 4789738 R PFAM: Anthranilate synthase component I and chorismate binding protein; KEGG: nfa:nfa16010 putative para-aminobenzoate synthase; anthranilate synthase component I/chorismate-binding protein complement(4788425..4789738) Nocardioides sp. JS614 4597046 YP_925712.1 CDS Noca_4528 NC_008699.1 4789735 4790298 R TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: cgb:cg1134 para-aminobenzoate synthase component I and II; anthranilate synthase, component II complement(4789735..4790298) Nocardioides sp. JS614 4597047 YP_925713.1 CDS Noca_4529 NC_008699.1 4790398 4792398 R PFAM: glutamine amidotransferase class-I; Anthranilate synthase component I and chorismate binding protein; KEGG: sco:SCO2117 anthranilate synthase; anthranilate synthase component I/chorismate-binding protein complement(4790398..4792398) Nocardioides sp. JS614 4597048 YP_925714.1 CDS Noca_4530 NC_008699.1 4792622 4793074 R hypothetical protein complement(4792622..4793074) Nocardioides sp. JS614 4597049 YP_925715.1 CDS Noca_4531 NC_008699.1 4793196 4795376 R KEGG: pac:PPA0733 putative helicase protein; putative helicase protein complement(4793196..4795376) Nocardioides sp. JS614 4597050 YP_925716.1 CDS Noca_4532 NC_008699.1 4795615 4796382 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: nfa:nfa53270 putative enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase complement(4795615..4796382) Nocardioides sp. JS614 4597051 YP_925717.1 CDS Noca_4533 NC_008699.1 4796436 4797962 D PFAM: oxidoreductase, molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: sco:SCO0555 membrane-bound oxidoreductase; oxidoreductase 4796436..4797962 Nocardioides sp. JS614 4597052 YP_925718.1 CDS Noca_4534 NC_008699.1 4798145 4798798 D PFAM: beta-Ig-H3/fasciclin; KEGG: sco:SCO0638 lipoprotein; beta-Ig-H3/fasciclin 4798145..4798798 Nocardioides sp. JS614 4597053 YP_925719.1 CDS Noca_4535 NC_008699.1 4798838 4799440 D Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in M. bovis this protein has been shown to be involved in expression of antigenic proteins; RNA polymerase sigma factor SigK 4798838..4799440 Nocardioides sp. JS614 4597054 YP_925720.1 CDS Noca_4536 NC_008699.1 4799437 4800189 D KEGG: sco:SCO0633 hypothetical protein; hypothetical protein 4799437..4800189 Nocardioides sp. JS614 4597055 YP_925721.1 CDS Noca_4537 NC_008699.1 4800186 4802189 D PFAM: amine oxidase; FAD dependent oxidoreductase; protein of unknown function DUF1365; KEGG: rha:RHA1_ro02557 possible amine oxidase; hypothetical protein 4800186..4802189 Nocardioides sp. JS614 4597056 YP_925722.1 CDS Noca_4538 NC_008699.1 4802186 4803433 D PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rha:RHA1_ro02559 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 4802186..4803433 Nocardioides sp. JS614 4597057 YP_925723.1 CDS Noca_4539 NC_008699.1 4803430 4804212 D PFAM: protein of unknown function DUF1295; KEGG: rha:RHA1_ro02561 possible membrane protein; hypothetical protein 4803430..4804212 Nocardioides sp. JS614 4597058 YP_925724.1 CDS Noca_4540 NC_008699.1 4804216 4804632 R KEGG: nfa:nfa26690 hypothetical protein; hypothetical protein complement(4804216..4804632) Nocardioides sp. JS614 4597059 YP_925725.1 CDS Noca_4541 NC_008699.1 4804671 4805237 D PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: mka:MK0282 protein-L-isoaspartate carboxylmethyltransferase; protein-L-isoaspartate(D-aspartate) O-methyltransferase 4804671..4805237 Nocardioides sp. JS614 4597060 YP_925726.1 CDS Noca_4542 NC_008699.1 4805251 4806048 D KEGG: rha:RHA1_ro01881 possible tyrosine protein phosphatase; putative tyrosine protein phosphatase 4805251..4806048 Nocardioides sp. JS614 4597061 YP_925727.1 CDS Noca_4543 NC_008699.1 4806195 4806605 D KEGG: mpa:MAP3880 hypothetical protein; hypothetical protein 4806195..4806605 Nocardioides sp. JS614 4597062 YP_925728.1 CDS Noca_4544 NC_008699.1 4806562 4807629 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: hne:HNE_0194 NADH:flavin oxidoreductase/NADH oxidase family protein; NADH:flavin oxidoreductase complement(4806562..4807629) Nocardioides sp. JS614 4597063 YP_925729.1 CDS Noca_4545 NC_008699.1 4807806 4808375 R PFAM: GCN5-related N-acetyltransferase; KEGG: sco:SCO2876 acetyltransferase; N-acetyltransferase GCN5 complement(4807806..4808375) Nocardioides sp. JS614 4597064 YP_925730.1 CDS Noca_4546 NC_008699.1 4808462 4810078 D hypothetical protein 4808462..4810078 Nocardioides sp. JS614 4597065 YP_925731.1 CDS Noca_4547 NC_008699.1 4810090 4810854 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: fal:FRAAL5043 putative methyltransferase (partial match); type 11 methyltransferase complement(4810090..4810854) Nocardioides sp. JS614 4597066 YP_925732.1 CDS Noca_4548 NC_008699.1 4810871 4811920 R PFAM: ribonuclease BN; KEGG: mpa:MAP1682c hypothetical protein; ribonuclease BN complement(4810871..4811920) Nocardioides sp. JS614 4597067 YP_925733.1 CDS Noca_4549 NC_008699.1 4811925 4813184 R involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV complement(4811925..4813184) Nocardioides sp. JS614 4597068 YP_925734.1 CDS Noca_4550 NC_008699.1 4813306 4814466 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: mpa:MAP0910c acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(4813306..4814466) Nocardioides sp. JS614 4597069 YP_925735.1 CDS Noca_4551 NC_008699.1 4814463 4816364 R PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: nfa:nfa53290 putative acetyl/propionyl-CoA carboxylase alpha subunit; carbamoyl-phosphate synthase subunit L complement(4814463..4816364) Nocardioides sp. JS614 4597070 YP_925736.1 CDS Noca_4552 NC_008699.1 4816537 4818141 R PFAM: carboxyl transferase; KEGG: rha:RHA1_ro01931 probable methylcrotonoyl-CoA carboxylase, beta chain; propionyl-CoA carboxylase complement(4816537..4818141) Nocardioides sp. JS614 4597071 YP_925737.1 CDS Noca_4553 NC_008699.1 4818138 4818623 R PFAM: cyclase/dehydrase; Activator of Hsp90 ATPase 1 family protein; KEGG: mpa:MAP1606c hypothetical protein; activator of Hsp90 ATPase 1 family protein complement(4818138..4818623) Nocardioides sp. JS614 4597072 YP_925738.1 CDS Noca_4554 NC_008699.1 4818620 4819780 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: nfa:nfa53310 putative acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(4818620..4819780) Nocardioides sp. JS614 4597073 YP_925739.1 CDS Noca_4555 NC_008699.1 4819777 4821531 R PFAM: protein of unknown function DUF1446; KEGG: nfa:nfa53320 hypothetical protein; hypothetical protein complement(4819777..4821531) Nocardioides sp. JS614 4597074 YP_925740.1 CDS Noca_4556 NC_008699.1 4821524 4822324 R KEGG: mmc:Mmcs_5394 hypothetical protein; hypothetical protein complement(4821524..4822324) Nocardioides sp. JS614 4597075 YP_925741.1 CDS Noca_4557 NC_008699.1 4822321 4822920 R PFAM: regulatory protein, TetR; KEGG: sma:SAV3862 TetR-family transcriptional regulator; TetR family transcriptional regulator complement(4822321..4822920) Nocardioides sp. JS614 4597076 YP_925742.1 CDS Noca_4558 NC_008699.1 4823098 4823916 D PFAM: RDD domain containing protein; KEGG: mpa:MAP1025 Pra; RDD domain-containing protein 4823098..4823916 Nocardioides sp. JS614 4597077 YP_925743.1 CDS Noca_4559 NC_008699.1 4823923 4825188 D PFAM: alpha/beta hydrolase fold; KEGG: sco:SCO0805 prolyl aminopeptidase; prolyl aminopeptidase 2 4823923..4825188 Nocardioides sp. JS614 4597078 YP_925744.1 CDS Noca_4560 NC_008699.1 4825431 4826102 R PFAM: Phosphoglycerate mutase; KEGG: mxa:MXAN_5898 hypothetical protein; phosphoglycerate mutase complement(4825431..4826102) Nocardioides sp. JS614 4597079 YP_925745.1 CDS Noca_4561 NC_008699.1 4826186 4827865 R PFAM: formate-tetrahydrofolate ligase, FTHFS; KEGG: gbe:GbCGDNIH1_0047 formate--tetrahydrofolate ligase; formate-tetrahydrofolate ligase complement(4826186..4827865) Nocardioides sp. JS614 4597080 YP_925746.1 CDS Noca_4562 NC_008699.1 4828113 4830323 R PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: mpa:MAP0790 enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase; short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase complement(4828113..4830323) Nocardioides sp. JS614 4597081 YP_925747.1 CDS Noca_4563 NC_008699.1 4830422 4831633 R KEGG: sco:SCO6731 acetyl-CoA acyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; acetyl-CoA acetyltransferase complement(4830422..4831633) Nocardioides sp. JS614 4597082 YP_925748.1 CDS Noca_4565 NC_008699.1 4832475 4833371 D PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; KEGG: nfa:nfa11930 hypothetical protein; NAD-dependent epimerase/dehydratase 4832475..4833371 Nocardioides sp. JS614 4597084 YP_925749.1 CDS Noca_4566 NC_008699.1 4833517 4834218 R PFAM: Abortive infection protein; KEGG: mpa:MAP2640c hypothetical protein; abortive infection protein complement(4833517..4834218) Nocardioides sp. JS614 4598664 YP_925750.1 CDS Noca_4567 NC_008699.1 4834292 4835815 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: lxx:Lxx20780 ATP-dependent RNA helicase; DEAD/DEAH box helicase domain-containing protein complement(4834292..4835815) Nocardioides sp. JS614 4598665 YP_925751.1 CDS Noca_4568 NC_008699.1 4835999 4836193 R PFAM: CsbD family protein; KEGG: rha:RHA1_ro04155 hypothetical protein; CsbD family protein complement(4835999..4836193) Nocardioides sp. JS614 4598666 YP_925752.1 CDS Noca_4569 NC_008699.1 4836251 4837690 R PFAM: FAD dependent oxidoreductase; KEGG: rha:RHA1_ro02919 flavin binding monooxygenase; FAD dependent oxidoreductase complement(4836251..4837690) Nocardioides sp. JS614 4598667 YP_925753.1 CDS Noca_4570 NC_008699.1 4837729 4838460 R Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; glutamine amidotransferase complement(4837729..4838460) Nocardioides sp. JS614 4598668 YP_925754.1 CDS Noca_4571 NC_008699.1 4838469 4839626 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: sma:SAV1682 fatty acid-CoA racemase; L-carnitine dehydratase/bile acid-inducible protein F complement(4838469..4839626) Nocardioides sp. JS614 4598669 YP_925755.1 CDS Noca_4573 NC_008699.1 4840818 4841555 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV6281 putative ABC transporter ATP-binding protein - glutamine transport; ABC transporter-like protein complement(4840818..4841555) Nocardioides sp. JS614 4598671 YP_925756.1 CDS Noca_4574 NC_008699.1 4841552 4842277 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV6282 putative glutamine ABC transporter permease protein; polar amino acid ABC transporter inner membrane subunit complement(4841552..4842277) Nocardioides sp. JS614 4598672 YP_925757.1 CDS Noca_4575 NC_008699.1 4842400 4843293 R PFAM: extracellular solute-binding protein, family 3; KEGG: sma:SAV6283 putative amino acid ABC transporter, periplasmic amino acid-binding protein; extracellular solute-binding protein complement(4842400..4843293) Nocardioides sp. JS614 4598673 YP_925758.1 CDS Noca_4576 NC_008699.1 4843418 4843963 D PFAM: transcriptional regulator PadR family protein; KEGG: nfa:nfa12910 putative transcriptional regulator; PadR family transcriptional regulator 4843418..4843963 Nocardioides sp. JS614 4598674 YP_925759.1 CDS Noca_4577 NC_008699.1 4843960 4845966 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rha:RHA1_ro01415 2,4-dienoyl-CoA reductase (NADPH); 2,4-dienoyl-CoA reductase 4843960..4845966 Nocardioides sp. JS614 4598675 YP_925760.1 CDS Noca_4578 NC_008699.1 4845978 4847138 D PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase, class I and II; KEGG: rha:RHA1_ro08885 probable aminotransferase; class I and II aminotransferase 4845978..4847138 Nocardioides sp. JS614 4598676 YP_925761.1 CDS Noca_4579 NC_008699.1 4847231 4848553 D PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: sma:SAV5025 putative UDP-glucose 6-dehydrogenase; UDP-glucose 6-dehydrogenase 4847231..4848553 Nocardioides sp. JS614 4598677 YP_925762.1 CDS Noca_4580 NC_008699.1 4848664 4849953 R KEGG: cac:CAC1615 predicted glycosyltransferase; hypothetical protein complement(4848664..4849953) Nocardioides sp. JS614 4598678 YP_925763.1 CDS Noca_4581 NC_008699.1 4849971 4850900 R KEGG: rxy:Rxyl_3098 hypothetical protein; hypothetical protein complement(4849971..4850900) Nocardioides sp. JS614 4598679 YP_925764.1 CDS Noca_4582 NC_008699.1 4850905 4851993 R KEGG: rxy:Rxyl_3097 hypothetical protein; hypothetical protein complement(4850905..4851993) Nocardioides sp. JS614 4598680 YP_925765.1 CDS Noca_4583 NC_008699.1 4852004 4853647 R PFAM: glycosyl transferase, family 2; KEGG: tfu:Tfu_1639 similar to glycosyltransferase; glycosyl transferase family protein complement(4852004..4853647) Nocardioides sp. JS614 4598681 YP_925766.1 CDS Noca_4584 NC_008699.1 4853655 4855295 R PFAM: glycosyl transferase, family 2; KEGG: dsy:DSY3936 hypothetical protein; glycosyl transferase family protein complement(4853655..4855295) Nocardioides sp. JS614 4598682 YP_925767.1 CDS Noca_4585 NC_008699.1 4855295 4856287 R KEGG: mes:Meso_0486 hypothetical protein; hypothetical protein complement(4855295..4856287) Nocardioides sp. JS614 4598683 YP_925768.1 CDS Noca_4586 NC_008699.1 4856342 4856965 D hypothetical protein 4856342..4856965 Nocardioides sp. JS614 4598684 YP_925769.1 CDS Noca_4587 NC_008699.1 4856993 4858390 R PFAM: glycoside hydrolase, family 1; KEGG: sma:SAV5598 putative beta-glucosidase; beta-glucosidase complement(4856993..4858390) Nocardioides sp. JS614 4598685 YP_925770.1 CDS Noca_4588 NC_008699.1 4858495 4859199 R KEGG: lma:LmjF35.0540 proteophosphoglycan 5; hypothetical protein complement(4858495..4859199) Nocardioides sp. JS614 4598686 YP_925771.1 CDS Noca_4589 NC_008699.1 4859177 4860100 R PFAM: diacylglycerol kinase, catalytic region; KEGG: sco:SCO0667 secreted protein; diacylglycerol kinase catalytic subunit complement(4859177..4860100) Nocardioides sp. JS614 4598687 YP_925772.1 CDS Noca_4590 NC_008699.1 4860097 4861653 R PFAM: FAD linked oxidase domain protein; KEGG: sco:SCO0668 putative flavoprotein; FAD linked oxidase domain-containing protein complement(4860097..4861653) Nocardioides sp. JS614 4598688 YP_925773.1 CDS Noca_4591 NC_008699.1 4861692 4862294 D PFAM: regulatory protein, TetR; KEGG: sco:SCO0669 TetR-family transcriptional regulator; regulatory protein TetR 4861692..4862294 Nocardioides sp. JS614 4598689 YP_925774.1 CDS Noca_4592 NC_008699.1 4862291 4863862 D PFAM: FAD dependent oxidoreductase; KEGG: sco:SCO0670 glycerol-3-phosphate dehydrogenase; FAD dependent oxidoreductase 4862291..4863862 Nocardioides sp. JS614 4598690 YP_925775.1 CDS Noca_4593 NC_008699.1 4863925 4865022 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; RNA polymerase factor sigma-70 4863925..4865022 Nocardioides sp. JS614 4598691 YP_925776.1 CDS Noca_4594 NC_008699.1 4865024 4865587 D KEGG: fal:FRAAL4123 hypothetical protein; hypothetical protein 4865024..4865587 Nocardioides sp. JS614 4598692 YP_925777.1 CDS Noca_4595 NC_008699.1 4865657 4866667 D PFAM: regulatory protein, LuxR; KEGG: sco:SCO4263 transcriptional regulatory protein; regulatory protein LuxR 4865657..4866667 Nocardioides sp. JS614 4598693 YP_925778.1 CDS Noca_4596 NC_008699.1 4866788 4867612 R KEGG: sil:SPO0916 hypothetical protein; hypothetical protein complement(4866788..4867612) Nocardioides sp. JS614 4598694 YP_925779.1 CDS Noca_4597 NC_008699.1 4867848 4868813 D hypothetical protein 4867848..4868813 Nocardioides sp. JS614 4598695 YP_925780.1 CDS Noca_4598 NC_008699.1 4868868 4870325 R PFAM: aldehyde dehydrogenase; KEGG: rha:RHA1_ro02683 succinate-semialdehyde dehydrogenase (NAD(P)+); succinate semialdehyde dehydrogenase complement(4868868..4870325) Nocardioides sp. JS614 4598696 YP_925781.1 CDS Noca_4599 NC_008699.1 4870833 4872938 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 4870833..4872938 Nocardioides sp. JS614 4598697 YP_925782.1 CDS Noca_4600 NC_008699.1 4873046 4874965 R PFAM: penicillin-binding protein, transpeptidase; KEGG: mxa:MXAN_7139 putative penicillin-binding protein; penicillin-binding protein, transpeptidase complement(4873046..4874965) Nocardioides sp. JS614 4598698 YP_925783.1 CDS Noca_4601 NC_008699.1 4875022 4876791 R PFAM: helicase domain protein; DbpA, RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: lxx:Lxx13450 ATP-dependent RNA helicase; DEAD/DEAH box helicase complement(4875022..4876791) Nocardioides sp. JS614 4598699 YP_925784.1 CDS Noca_4602 NC_008699.1 4876868 4878700 R TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase, class-II; sugar isomerase (SIS); KEGG: sco:SCO2789 glucosamine-fructose-6-phosphate aminotransferase; glutamine--fructose-6-phosphate transaminase complement(4876868..4878700) Nocardioides sp. JS614 4598700 YP_925785.1 CDS Noca_4603 NC_008699.1 4878811 4879098 R KEGG: sco:SCO2788 hypothetical protein; hypothetical protein complement(4878811..4879098) Nocardioides sp. JS614 4598701 YP_925786.1 CDS Noca_4604 NC_008699.1 4879215 4879487 D hypothetical protein 4879215..4879487 Nocardioides sp. JS614 4598702 YP_925787.1 CDS Noca_4605 NC_008699.1 4879668 4880258 D PFAM: YceI family protein; KEGG: sco:SCO5533 hypothetical protein; hypothetical protein 4879668..4880258 Nocardioides sp. JS614 4598703 YP_925788.1 CDS Noca_4606 NC_008699.1 4880364 4881290 D PFAM: GCN5-related N-acetyltransferase; KEGG: sco:SCO4151 acetyltransferase; N-acetyltransferase GCN5 4880364..4881290 Nocardioides sp. JS614 4598704 YP_925789.1 CDS Noca_4607 NC_008699.1 4881303 4882529 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: sco:SCO1209 putative acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(4881303..4882529) Nocardioides sp. JS614 4596063 YP_925790.1 CDS Noca_4608 NC_008699.1 4882600 4884243 R PFAM: Na+/solute symporter; KEGG: sma:SAV3025 putative proline permease; Na+/solute symporter complement(4882600..4884243) Nocardioides sp. JS614 4596064 YP_925791.1 CDS Noca_4609 NC_008699.1 4884240 4884551 R KEGG: sma:SAV3024 hypothetical protein; hypothetical protein complement(4884240..4884551) Nocardioides sp. JS614 4596065 YP_925792.1 CDS Noca_4610 NC_008699.1 4884767 4885870 R hypothetical protein complement(4884767..4885870) Nocardioides sp. JS614 4596066 YP_925793.1 CDS Noca_4611 NC_008699.1 4886029 4886487 R PFAM: protein of unknown function DUF1707; KEGG: tfu:Tfu_2623 hypothetical protein; hypothetical protein complement(4886029..4886487) Nocardioides sp. JS614 4596067 YP_925794.1 CDS Noca_4612 NC_008699.1 4886484 4887188 R PFAM: transcriptional regulator PadR family protein; KEGG: nfa:nfa36110 putative transcriptional regulator; PadR family transcriptional regulator complement(4886484..4887188) Nocardioides sp. JS614 4596068 YP_925795.1 CDS Noca_4613 NC_008699.1 4887395 4889320 R PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: ade:Adeh_0397 thimet oligopeptidase; thimet oligopeptidase complement(4887395..4889320) Nocardioides sp. JS614 4596069 YP_925796.1 CDS Noca_4614 NC_008699.1 4889383 4890624 R PFAM: sigma-70 region 2 domain protein; Tetratricopeptide TPR_2 repeat protein; Sigma-70, region 4 type 2; KEGG: sma:SAV1195 putative RNA polymerase ECF-subfamily sigma factor; sigma-70 region 2 domain-containing protein complement(4889383..4890624) Nocardioides sp. JS614 4596070 YP_925797.1 CDS Noca_4615 NC_008699.1 4890818 4891201 D KEGG: sco:SCO4674 hypothetical protein; hypothetical protein 4890818..4891201 Nocardioides sp. JS614 4596071 YP_925798.1 CDS Noca_4616 NC_008699.1 4891198 4891812 D KEGG: mmc:Mmcs_1143 hypothetical protein; hypothetical protein 4891198..4891812 Nocardioides sp. JS614 4596072 YP_925799.1 CDS Noca_4617 NC_008699.1 4891817 4892842 D PFAM: glycoside hydrolase, family 6; KEGG: mtu:Rv0062 cellulase / endoglucanase; cellulase 4891817..4892842 Nocardioides sp. JS614 4596073 YP_925800.1 CDS Noca_4618 NC_008699.1 4892852 4894132 D PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro04995 probable multidrug resistance transporter, MFS superfamily; major facilitator transporter 4892852..4894132 Nocardioides sp. JS614 4596074 YP_925801.1 CDS Noca_4619 NC_008699.1 4894151 4894657 R KEGG: mpa:MAP3942 hypothetical protein; hypothetical protein complement(4894151..4894657) Nocardioides sp. JS614 4596075 YP_925802.1 CDS Noca_4620 NC_008699.1 4894755 4897895 R PFAM: RelA/SpoT domain protein; KEGG: rha:RHA1_ro05719 cytochrome P450 CYP130; RelA/SpoT domain-containing protein complement(4894755..4897895) Nocardioides sp. JS614 4596076 YP_925803.1 CDS Noca_4621 NC_008699.1 4898560 4899483 R PFAM: Indigoidine synthase A family protein; KEGG: dge:Dgeo_0357 indigoidine synthase A like protein; indigoidine synthase A family protein complement(4898560..4899483) Nocardioides sp. JS614 4596077 YP_925804.1 CDS Noca_4622 NC_008699.1 4899480 4900589 R PFAM: PfkB domain protein; Helix-turn-helix, type 11 domain protein; KEGG: dge:Dgeo_0358 PfkB; ribokinase-like domain-containing protein complement(4899480..4900589) Nocardioides sp. JS614 4596078 YP_925805.1 CDS Noca_4623 NC_008699.1 4900595 4901878 R PFAM: YibE/F family protein; KEGG: rha:RHA1_ro05459 hypothetical protein; hypothetical protein complement(4900595..4901878) Nocardioides sp. JS614 4596079 YP_925806.1 CDS Noca_4624 NC_008699.1 4901971 4902612 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: nfa:nfa34180 putative translocator; lysine exporter protein LysE/YggA 4901971..4902612 Nocardioides sp. JS614 4596080 YP_925807.1 CDS Noca_4625 NC_008699.1 4902619 4904226 R PFAM: purine catabolism PurC domain protein; KEGG: rha:RHA1_ro04467 possible transcriptional regulator; CdaR family transcriptional regulator complement(4902619..4904226) Nocardioides sp. JS614 4596081 YP_925808.1 CDS Noca_4626 NC_008699.1 4904236 4905732 D TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: mmc:Mmcs_0348 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 4904236..4905732 Nocardioides sp. JS614 4596082 YP_925809.1 CDS Noca_4627 NC_008699.1 4905748 4907055 D PFAM: aminotransferase class-III; KEGG: mmc:Mmcs_0347 aminotransferase class-III; hypothetical protein 4905748..4907055 Nocardioides sp. JS614 4596083 YP_925810.1 CDS Noca_4628 NC_008699.1 4907042 4908475 D PFAM: FAD dependent oxidoreductase; KEGG: rha:RHA1_ro05390 hypothetical protein; FAD dependent oxidoreductase 4907042..4908475 Nocardioides sp. JS614 4596084 YP_925811.1 CDS Noca_4629 NC_008699.1 4908497 4909264 R hypothetical protein complement(4908497..4909264) Nocardioides sp. JS614 4596085 YP_925812.1 CDS Noca_4630 NC_008699.1 4909269 4911503 R PFAM: glycoside hydrolase, family 31; KEGG: lmo:lmo0182 hypothetical protein; glycoside hydrolase family protein complement(4909269..4911503) Nocardioides sp. JS614 4596086 YP_925813.1 CDS Noca_4631 NC_008699.1 4911500 4912660 R PFAM: glycoside hydrolase 15-related; KEGG: xac:XAC4082 hypothetical protein; glycoside hydrolase 15-like protein complement(4911500..4912660) Nocardioides sp. JS614 4596087 YP_925814.1 CDS Noca_4632 NC_008699.1 4912744 4914003 R PFAM: extracellular solute-binding protein, family 1; KEGG: lmo:lmo0181 similar to sugar ABC transporter, sugar-binding protein; extracellular solute-binding protein complement(4912744..4914003) Nocardioides sp. JS614 4596088 YP_925815.1 CDS Noca_4633 NC_008699.1 4914068 4914895 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lmf:LMOf2365_0191 sugar ABC transporter, permease protein; binding-protein-dependent transport systems inner membrane component complement(4914068..4914895) Nocardioides sp. JS614 4596089 YP_925816.1 CDS Noca_4634 NC_008699.1 4914888 4915766 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lin:lin0218 similar to sugar ABC transporters, permease proteins; binding-protein-dependent transport systems inner membrane component complement(4914888..4915766) Nocardioides sp. JS614 4596090 YP_925817.1 CDS Noca_4635 NC_008699.1 4915766 4916971 R PFAM: ROK family protein; KEGG: sma:SAV1081 ROK-family transcriptional regulator; ROK family protein complement(4915766..4916971) Nocardioides sp. JS614 4596091 YP_925818.1 CDS Noca_4636 NC_008699.1 4917093 4917956 D hypothetical protein 4917093..4917956 Nocardioides sp. JS614 4596092 YP_925819.1 CDS Noca_4637 NC_008699.1 4918023 4918604 D PFAM: GCN5-related N-acetyltransferase; KEGG: fal:FRAAL3248 putative acetyltransferase; N-acetyltransferase GCN5 4918023..4918604 Nocardioides sp. JS614 4596093 YP_925820.1 CDS Noca_4638 NC_008699.1 4918612 4919280 R PFAM: GCN5-related N-acetyltransferase; KEGG: lxx:Lxx17400 acetyltransferase; N-acetyltransferase GCN5 complement(4918612..4919280) Nocardioides sp. JS614 4596094 YP_925821.1 CDS Noca_4639 NC_008699.1 4919423 4920943 D KEGG: fal:FRAAL6508 putative serine/threonine protein kinase; hypothetical protein 4919423..4920943 Nocardioides sp. JS614 4596095 YP_925822.1 CDS Noca_4640 NC_008699.1 4920965 4921705 R KEGG: btk:BT9727_2577 hypothetical protein; hypothetical protein complement(4920965..4921705) Nocardioides sp. JS614 4596096 YP_925823.1 CDS Noca_4641 NC_008699.1 4921702 4922166 R hypothetical protein complement(4921702..4922166) Nocardioides sp. JS614 4596097 YP_925824.1 CDS Noca_4642 NC_008699.1 4922232 4922468 D hypothetical protein 4922232..4922468 Nocardioides sp. JS614 4596098 YP_925825.1 CDS Noca_4643 NC_008699.1 4922465 4923118 D PFAM: Sigma-70, region 4 type 2; KEGG: rpa:RPA1819 RNA polymerase ECF-type sigma factor, possible FecI; sigma-70 factor 4922465..4923118 Nocardioides sp. JS614 4596504 YP_925826.1 CDS Noca_4644 NC_008699.1 4923115 4923348 D hypothetical protein 4923115..4923348 Nocardioides sp. JS614 4596505 YP_925827.1 CDS Noca_4645 NC_008699.1 4923360 4924292 D PFAM: Patatin; KEGG: rha:RHA1_ro01898 possible lipid acyl hydrolase; patatin 4923360..4924292 Nocardioides sp. JS614 4596506 YP_925828.1 CDS Noca_4646 NC_008699.1 4924352 4924687 D PFAM: protein of unknown function DUF488; KEGG: nha:Nham_3631 protein of unknown function DUF488; hypothetical protein 4924352..4924687 Nocardioides sp. JS614 4596507 YP_925829.1 CDS Noca_4647 NC_008699.1 4924749 4925198 D PFAM: NC domain protein; KEGG: syf:Synpcc7942_2528 hypothetical protein; NC domain-containing protein 4924749..4925198 Nocardioides sp. JS614 4596508 YP_925830.1 CDS Noca_4648 NC_008699.1 4925226 4925723 D PFAM: GtrA family protein; KEGG: tfu:Tfu_2548 hypothetical protein; GtrA family protein 4925226..4925723 Nocardioides sp. JS614 4596509 YP_925831.1 CDS Noca_4649 NC_008699.1 4926034 4927053 R KEGG: nfa:pnf1690 hypothetical protein; hypothetical protein complement(4926034..4927053) Nocardioides sp. JS614 4596510 YP_925832.1 CDS Noca_4650 NC_008699.1 4927187 4927501 D hypothetical protein 4927187..4927501 Nocardioides sp. JS614 4596511 YP_925833.1 CDS Noca_4651 NC_008699.1 4927602 4928963 D KEGG: mpa:MAP3467c hypothetical protein; hypothetical protein 4927602..4928963 Nocardioides sp. JS614 4596512 YP_925834.1 CDS Noca_4652 NC_008699.1 4929169 4930671 D PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: mlo:mll9045 transposase; transposase, IS111A/IS1328/IS1533 4929169..4930671 Nocardioides sp. JS614 4596513 YP_925835.1 CDS Noca_4653 NC_008699.1 4931409 4931759 R hypothetical protein complement(4931409..4931759) Nocardioides sp. JS614 4596514 YP_925836.1 CDS Noca_4654 NC_008699.1 4932078 4932707 R PFAM: NUDIX hydrolase; NUDIX hydrolase complement(4932078..4932707) Nocardioides sp. JS614 4596515 YP_925837.1 CDS Noca_4655 NC_008699.1 4932704 4933438 R hypothetical protein complement(4932704..4933438) Nocardioides sp. JS614 4596516 YP_925838.1 CDS Noca_4656 NC_008699.1 4933763 4934356 R KEGG: nar:Saro_2717 hypothetical protein; hypothetical protein complement(4933763..4934356) Nocardioides sp. JS614 4596517 YP_925839.1 CDS Noca_4657 NC_008699.1 4934880 4937354 R PFAM: DnaB domain protein helicase, N-terminal domain protein; DnaB domain protein helicase, C-terminal domain protein; KEGG: mmc:Mmcs_5366 DnaB helicase-like protein; DnaB domain-containing protein complement(4934880..4937354) Nocardioides sp. JS614 4596518 YP_925840.1 CDS Noca_4658 NC_008699.1 4937851 4939230 D TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: sma:SAV4285 DNA-damage-inducible protein F; MATE efflux family protein 4937851..4939230 Nocardioides sp. JS614 4596519 YP_925841.1 CDS Noca_4659 NC_008699.1 4939273 4939812 D hypothetical protein 4939273..4939812 Nocardioides sp. JS614 4596520 YP_925842.1 CDS Noca_4660 NC_008699.1 4939889 4941091 D KEGG: mxa:MXAN_5598 OmpA domain protein; hypothetical protein 4939889..4941091 Nocardioides sp. JS614 4596521 YP_925843.1 CDS Noca_4661 NC_008699.1 4941228 4941674 R PFAM: ribosomal protein L9; KEGG: tfu:Tfu_3092 ribosomal protein L9; 50S ribosomal protein L9 complement(4941228..4941674) Nocardioides sp. JS614 4596522 YP_925844.1 CDS rpsR NC_008699.1 4941689 4941925 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(4941689..4941925) Nocardioides sp. JS614 4596523 YP_925845.1 CDS Noca_4663 NC_008699.1 4942006 4942572 R TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: fra:Francci3_4521 single-strand binding protein; single-strand binding protein complement(4942006..4942572) Nocardioides sp. JS614 4596524 YP_925846.1 CDS Noca_4664 NC_008699.1 4942697 4942987 R PFAM: ribosomal protein S6; KEGG: mpa:MAP0067 30S ribosomal protein S6; 30S ribosomal protein S6 complement(4942697..4942987) Nocardioides sp. JS614 4596525 YP_925847.1 CDS Noca_4665 NC_008699.1 4943349 4944272 D PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: sco:SCO3860 serine/threonine protein kinase; protein kinase 4943349..4944272 Nocardioides sp. JS614 4596526 YP_925848.1 CDS Noca_4666 NC_008699.1 4944582 4945391 D Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 4944582..4945391 Nocardioides sp. JS614 4596527 YP_925849.1 CDS Noca_4667 NC_008699.1 4945388 4945801 D KEGG: sco:SCO4220 hypothetical protein; hypothetical protein 4945388..4945801 Nocardioides sp. JS614 4596528 YP_925850.1 CDS Noca_4668 NC_008699.1 4945825 4946124 R hypothetical protein complement(4945825..4946124) Nocardioides sp. JS614 4596529 YP_925851.1 CDS Noca_4669 NC_008699.1 4946259 4948694 R PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: sco:SCO6994 hypothetical protein; hypothetical protein complement(4946259..4948694) Nocardioides sp. JS614 4596530 YP_925852.1 CDS Noca_4670 NC_008699.1 4948702 4950297 R PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: sco:SCO6995 protease; peptidase S8/S53 subtilisin kexin sedolisin complement(4948702..4950297) Nocardioides sp. JS614 4596531 YP_925853.1 CDS Noca_4671 NC_008699.1 4950311 4950772 R hypothetical protein complement(4950311..4950772) Nocardioides sp. JS614 4596532 YP_925854.1 CDS Noca_4672 NC_008699.1 4950772 4951383 R PFAM: sigma-70 region 2 domain protein; KEGG: sco:SCO6996 RNA polymerase sigma factor; sigma-70 region 2 domain-containing protein complement(4950772..4951383) Nocardioides sp. JS614 4596533 YP_925855.1 CDS Noca_4673 NC_008699.1 4951556 4952707 D PFAM: Methicillin resistance protein; KEGG: sco:SCO3593 hypothetical protein; methicillin resistance protein 4951556..4952707 Nocardioides sp. JS614 4596534 YP_925856.1 CDS Noca_4674 NC_008699.1 4952715 4953770 D PFAM: alanine racemase domain protein; KEGG: sco:SCO3903 hypothetical protein; alanine racemase domain-containing protein 4952715..4953770 Nocardioides sp. JS614 4596535 YP_925857.1 CDS Noca_4675 NC_008699.1 4953856 4955346 R KEGG: sco:SCO3902 integral membrane protein; integral membrane protein complement(4953856..4955346) Nocardioides sp. JS614 4598219 YP_925858.1 CDS Noca_4676 NC_008699.1 4955357 4957693 R PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; KEGG: pac:PPA0126 putative penicillin-binding protein; glycosyl transferase family protein complement(4955357..4957693) Nocardioides sp. JS614 4598220 YP_925859.1 CDS Noca_4677 NC_008699.1 4957890 4958501 D PFAM: transcriptional regulator PadR family protein; KEGG: sma:SAV4295 transcriptional regulator PadR-like family; PadR family transcriptional regulator 4957890..4958501 Nocardioides sp. JS614 4598221 YP_925860.1 CDS Noca_4678 NC_008699.1 4958562 4959647 D PFAM: Myo-inositol-1-phosphate synthase; Myo-inositol-1-phosphate synthase, GAPDH domain protein; KEGG: tfu:Tfu_3099 myo-inositol-1-phosphate synthase; myo-inositol-1-phosphate synthase 4958562..4959647 Nocardioides sp. JS614 4598222 YP_925861.1 CDS Noca_4679 NC_008699.1 4959854 4963957 D PFAM: PKD domain containing protein; peptidase M6, immune inhibitor A; KEGG: gka:GK1831 metal-dependent protease; PKD domain-containing protein 4959854..4963957 Nocardioides sp. JS614 4598223 YP_925862.1 CDS Noca_4680 NC_008699.1 4964017 4965606 R PFAM: protein of unknown function DUF853, NPT hydrolase putative; KEGG: sma:SAV4175 hypothetical protein; hypothetical protein complement(4964017..4965606) Nocardioides sp. JS614 4598224 YP_925863.1 CDS Noca_4681 NC_008699.1 4965705 4967156 R KEGG: sma:SAV4299 putative RNA nucleotidyltransferase; TIGRFAM: metal dependent phophohydrolase; HDIG domain protein; PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; HDIG domain-containing protein complement(4965705..4967156) Nocardioides sp. JS614 4598225 YP_925864.1 CDS Noca_4682 NC_008699.1 4967226 4969433 D KEGG: sco:SCO3895 hypothetical protein; hypothetical protein 4967226..4969433 Nocardioides sp. JS614 4598226 YP_925865.1 CDS Noca_4683 NC_008699.1 4969430 4971088 D TIGRFAM: integral membrane protein MviN; PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: sma:SAV4052 transmembrane protein; integral membrane protein MviN 4969430..4971088 Nocardioides sp. JS614 4598227 YP_925866.1 CDS Noca_4684 NC_008699.1 4971168 4973036 D SMART: serine/threonine protein kinase; KEGG: pac:PPA2303 probable serine-threonine protein kinase; serine/threonine protein kinase 4971168..4973036 Nocardioides sp. JS614 4598228 YP_925867.1 CDS Noca_4685 NC_008699.1 4973077 4973778 D Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription: in Mycobacterium bovis this protein has been shown to be active at high temperatures and during stationary phase; RNA polymerase sigma factor SigM 4973077..4973778 Nocardioides sp. JS614 4598229 YP_925868.1 CDS Noca_4686 NC_008699.1 4973841 4974608 D hypothetical protein 4973841..4974608 Nocardioides sp. JS614 4598230 YP_925869.1 CDS Noca_4687 NC_008699.1 4974736 4975725 D TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sco:SCO3890 thioredoxin reductase (NADPH); thioredoxin reductase 4974736..4975725 Nocardioides sp. JS614 4598231 YP_925870.1 CDS Noca_4688 NC_008699.1 4975837 4976163 D TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: sma:SAV4306 putative thioredoxin; thioredoxin 4975837..4976163 Nocardioides sp. JS614 4598232 YP_925871.1 CDS Noca_4689 NC_008699.1 4976270 4976944 R PFAM: GCN5-related N-acetyltransferase; KEGG: fra:Francci3_4539 conserved hypothetical protein; N-acetyltransferase GCN5 complement(4976270..4976944) Nocardioides sp. JS614 4598233 YP_925872.1 CDS Noca_4690 NC_008699.1 4977012 4978331 D PFAM: aminotransferase, class I and II; KEGG: tfu:Tfu_1641 valine-pyruvate aminotransferase; class I and II aminotransferase 4977012..4978331 Nocardioides sp. JS614 4598234 YP_925873.1 CDS Noca_4691 NC_008699.1 4978354 4979325 D KEGG: tfu:Tfu_1640 D-alanine--D-alanine ligase; TIGRFAM: D-alanine--D-alanine ligase; PFAM: phosphoribosylglycinamide synthetase; D-alanine--D-alanine ligase domain protein; D-alanine--D-alanine ligase 4978354..4979325 Nocardioides sp. JS614 4598235 YP_925874.1 CDS Noca_4692 NC_008699.1 4979327 4980103 D PFAM: phospholipid/glycerol acyltransferase; KEGG: nfa:nfa1490 putative 1-acylglycerol-3-phosphate O-acyltransferase; phospholipid/glycerol acyltransferase 4979327..4980103 Nocardioides sp. JS614 4598236 YP_925875.1 CDS Noca_4693 NC_008699.1 4980138 4981094 R TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: sma:SAV4308 putative ParB homolog; chromosome segregation DNA-binding protein complement(4980138..4981094) Nocardioides sp. JS614 4598237 YP_925876.1 CDS Noca_4694 NC_008699.1 4981094 4982179 R PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: sma:SAV4309 putative partitioning or sporulation protein; chromosome segregation ATPase complement(4981094..4982179) Nocardioides sp. JS614 4598238 YP_925877.1 CDS Noca_4695 NC_008699.1 4982176 4982928 R TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: tfu:Tfu_3112 glucose inhibited division protein; methyltransferase GidB complement(4982176..4982928) Nocardioides sp. JS614 4598239 YP_925878.1 CDS Noca_4696 NC_008699.1 4982939 4983517 R PFAM: single-stranded nucleic acid binding R3H domain protein; KEGG: sma:SAV4311 putative Jag-like protein; single-stranded nucleic acid binding R3H domain-containing protein complement(4982939..4983517) Nocardioides sp. JS614 4598240 YP_925879.1 CDS Noca_4697 NC_008699.1 4983514 4984605 R functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC complement(4983514..4984605) Nocardioides sp. JS614 4598241 YP_925880.1 CDS Noca_4698 NC_008699.1 4984609 4984887 R PFAM: protein of unknown function DUF37; KEGG: pol:Bpro_4906 protein of unknown function DUF37; hypothetical protein complement(4984609..4984887) Nocardioides sp. JS614 4598242 YP_925881.1 CDS Noca_4699 NC_008699.1 4984884 4985237 R TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: sma:SAV4314 putative RNase P component; ribonuclease P protein component complement(4984884..4985237) Nocardioides sp. JS614 4598243 YP_925882.1 CDS Noca_4700 NC_008699.1 4985272 4985409 R PFAM: ribosomal protein L34; KEGG: tfu:Tfu_3117 ribosomal protein L34; 50S ribosomal protein L34 complement(4985272..4985409) Nocardioides sp. JS614 4598244 Noca_R0001 tRNA Noca_R0001 NC_008699.1 11935 12008 D tRNA-Ile 11935..12008 Nocardioides sp. JS614 4598360 Noca_R0002 tRNA Noca_R0002 NC_008699.1 12276 12351 D tRNA-Ala 12276..12351 Nocardioides sp. JS614 4598361 Noca_R0003 tRNA Noca_R0003 NC_008699.1 32617 32700 D tRNA-Leu 32617..32700 Nocardioides sp. JS614 4598382 Noca_R0004 tRNA Noca_R0004 NC_008699.1 196527 196614 R tRNA-Ser complement(196527..196614) Nocardioides sp. JS614 4599001 Noca_R0005 tRNA Noca_R0005 NC_008699.1 197696 197788 D tRNA-Ser 197696..197788 Nocardioides sp. JS614 4599004 Noca_R0006 tRNA Noca_R0006 NC_008699.1 202663 202735 D tRNA-Arg 202663..202735 Nocardioides sp. JS614 4599008 Noca_R0007 tRNA Noca_R0007 NC_008699.1 303375 303464 D tRNA-Ser 303375..303464 Nocardioides sp. JS614 4595992 Noca_R0008 tRNA Noca_R0008 NC_008699.1 339643 339731 R tRNA-Ser complement(339643..339731) Nocardioides sp. JS614 4597951 Noca_R0010 tRNA Noca_R0010 NC_008699.1 347117 347193 R tRNA-Pro complement(347117..347193) Nocardioides sp. JS614 4597960 Noca_R0011 tRNA Noca_R0011 NC_008699.1 425150 425225 D tRNA-Thr 425150..425225 Nocardioides sp. JS614 4597780 Noca_R0012 tRNA Noca_R0012 NC_008699.1 595077 595158 D tRNA-Tyr 595077..595158 Nocardioides sp. JS614 4596232 Noca_R0013 tRNA Noca_R0013 NC_008699.1 709261 709333 D tRNA-Thr 709261..709333 Nocardioides sp. JS614 4599531 Noca_R0014 tRNA Noca_R0014 NC_008699.1 709389 709462 D tRNA-Met 709389..709462 Nocardioides sp. JS614 4599532 Noca_R0015 tRNA Noca_R0015 NC_008699.1 733698 733773 D tRNA-Trp 733698..733773 Nocardioides sp. JS614 4597558 Noca_R0016 tRNA Noca_R0016 NC_008699.1 827249 827324 R tRNA-Arg complement(827249..827324) Nocardioides sp. JS614 4598864 Noca_R0017 tRNA Noca_R0017 NC_008699.1 838947 839022 D tRNA-Ala 838947..839022 Nocardioides sp. JS614 4598877 Noca_R0018 tRNA Noca_R0018 NC_008699.1 950002 950080 D tRNA-Gln 950002..950080 Nocardioides sp. JS614 4599590 Noca_R0019 tRNA Noca_R0019 NC_008699.1 981354 981430 D tRNA-Leu 981354..981430 Nocardioides sp. JS614 4597468 Noca_R0022 tRNA Noca_R0022 NC_008699.1 1396961 1397045 R tRNA-Leu complement(1396961..1397045) Nocardioides sp. JS614 4598564 Noca_R0023 tRNA Noca_R0023 NC_008699.1 1410376 1410451 R tRNA-Lys complement(1410376..1410451) Nocardioides sp. JS614 4598578 Noca_R0024 tRNA Noca_R0024 NC_008699.1 1428940 1429015 R tRNA-His complement(1428940..1429015) Nocardioides sp. JS614 4598516 Noca_R0025 tRNA Noca_R0025 NC_008699.1 1436447 1436523 R tRNA-Arg complement(1436447..1436523) Nocardioides sp. JS614 4598526 Noca_R0026 tRNA Noca_R0026 NC_008699.1 1625605 1625681 D tRNA-Met 1625605..1625681 Nocardioides sp. JS614 4595682 Noca_R0027 tRNA Noca_R0027 NC_008699.1 1693513 1693597 D tRNA-Met 1693513..1693597 Nocardioides sp. JS614 4596502 Noca_R0028 tRNA Noca_R0028 NC_008699.1 1850749 1850821 R tRNA-Arg complement(1850749..1850821) Nocardioides sp. JS614 4598504 Noca_R0029 tRNA Noca_R0029 NC_008699.1 1942709 1942784 D tRNA-Ala 1942709..1942784 Nocardioides sp. JS614 4597660 Noca_R0030 tRNA Noca_R0030 NC_008699.1 2081097 2081169 D tRNA-Asn 2081097..2081169 Nocardioides sp. JS614 4599854 Noca_R0031 tRNA Noca_R0031 NC_008699.1 2095934 2096010 D tRNA-Met 2095934..2096010 Nocardioides sp. JS614 4599872 Noca_R0035 tRNA Noca_R0035 NC_008699.1 2136462 2136536 D tRNA-Val 2136462..2136536 Nocardioides sp. JS614 4598312 Noca_R0037 tRNA Noca_R0037 NC_008699.1 2523391 2523465 R tRNA-Val complement(2523391..2523465) Nocardioides sp. JS614 4595982 Noca_R0038 tRNA Noca_R0038 NC_008699.1 2523490 2523563 R tRNA-Cys complement(2523490..2523563) Nocardioides sp. JS614 4595983 Noca_R0039 tRNA Noca_R0039 NC_008699.1 2523595 2523667 R tRNA-Gly complement(2523595..2523667) Nocardioides sp. JS614 4595984 Noca_R0040 tRNA Noca_R0040 NC_008699.1 2525215 2525289 D tRNA-Val 2525215..2525289 Nocardioides sp. JS614 4595987 Noca_R0044 tRNA Noca_R0044 NC_008699.1 2671978 2672054 D tRNA-Pro 2671978..2672054 Nocardioides sp. JS614 4597834 Noca_R0045 tRNA Noca_R0045 NC_008699.1 2788065 2788153 R tRNA-Leu complement(2788065..2788153) Nocardioides sp. JS614 4596423 Noca_R0046 tRNA Noca_R0046 NC_008699.1 3215698 3215771 D tRNA-Leu 3215698..3215771 Nocardioides sp. JS614 4596466 Noca_R0048 tRNA Noca_R0048 NC_008699.1 3539648 3539723 R tRNA-Glu complement(3539648..3539723) Nocardioides sp. JS614 4600227 Noca_R0049 tRNA Noca_R0049 NC_008699.1 3539813 3539887 R tRNA-Gln complement(3539813..3539887) Nocardioides sp. JS614 4600228 Noca_R0050 tRNA Noca_R0050 NC_008699.1 3690972 3691044 R tRNA-Pro complement(3690972..3691044) Nocardioides sp. JS614 4595578 Noca_R0051 tRNA Noca_R0051 NC_008699.1 3691089 3691162 R tRNA-Gly complement(3691089..3691162) Nocardioides sp. JS614 4595579 Noca_R0053 tRNA Noca_R0053 NC_008699.1 4231439 4231514 R tRNA-Thr complement(4231439..4231514) Nocardioides sp. JS614 4598144 Noca_R0054 tRNA Noca_R0054 NC_008699.1 4514690 4514765 D tRNA-Lys 4514690..4514765 Nocardioides sp. JS614 4596788 Noca_R0055 tRNA Noca_R0055 NC_008699.1 4533618 4533694 R tRNA-Asp complement(4533618..4533694) Nocardioides sp. JS614 4596807 Noca_R0056 tRNA Noca_R0056 NC_008699.1 4533809 4533884 R tRNA-Glu complement(4533809..4533884) Nocardioides sp. JS614 4596808 Noca_R0057 tRNA Noca_R0057 NC_008699.1 4534026 4534102 D tRNA-Phe 4534026..4534102 Nocardioides sp. JS614 4596809 Noca_R0058 tRNA Noca_R0058 NC_008699.1 4668644 4668719 D tRNA-Gly 4668644..4668719 Nocardioides sp. JS614 4596932 Noca_R0032 rRNA Noca_R0032 NC_008699.1 2113497 2115016 D 16S ribosomal RNA 2113497..2115016 Nocardioides sp. JS614 4598293 Noca_R0033 rRNA Noca_R0033 NC_008699.1 2115459 2118586 D 23S ribosomal RNA 2115459..2118586 Nocardioides sp. JS614 4598294 Noca_R0034 rRNA Noca_R0034 NC_008699.1 2118714 2118830 D 5S ribosomal RNA 2118714..2118830 Nocardioides sp. JS614 4598295 Noca_R0041 rRNA Noca_R0041 NC_008699.1 2638556 2640075 D 16S ribosomal RNA 2638556..2640075 Nocardioides sp. JS614 4597099 Noca_R0042 rRNA Noca_R0042 NC_008699.1 2640518 2643645 D 23S ribosomal RNA 2640518..2643645 Nocardioides sp. JS614 4597100 Noca_R0043 rRNA Noca_R0043 NC_008699.1 2643773 2643889 D 5S ribosomal RNA 2643773..2643889 Nocardioides sp. JS614 4597101