-- dump date 20140619_165100 -- class Genbank::CDS -- table cds_note -- id note YP_919151.1 KEGG: rha:RHA1_ro03109 hypothetical protein YP_919153.1 PFAM: Chromosomal replication initiator, DnaA C-terminal domain; KEGG: syw:SYNW1536 chromosomal replication initiator protein DnaA YP_919155.1 KEGG: sma:SAV4509 conjugative transfer gene complex protein YP_919156.1 KEGG: mmr:Mmar10_0854 hypothetical protein YP_919158.1 KEGG: sco:SCO6878 ATP-binding protein YP_919161.1 KEGG: sco:SCO3515 integral membrane protein YP_919162.1 KEGG: fal:FRAAL0037 hypothetical protein; putative membrane protein YP_919168.1 PFAM: Peptidoglycan-binding LysM; KEGG: sma:SAV192 hypothetical protein YP_919169.1 KEGG: fra:Francci3_1731 putative membrane protein YP_919170.1 PFAM: TadE family protein; KEGG: sma:SAV190 hypothetical protein YP_919171.1 KEGG: sma:SAV189 hypothetical protein YP_919173.1 KEGG: sco:SCO4528 integral membrane protein YP_919174.1 PFAM: phage integrase family protein; KEGG: nfa:pnf2830 putative recombinase YP_919175.1 KEGG: nfa:pnf2840 hypothetical protein YP_919176.1 KEGG: nfa:pnf2850 hypothetical protein YP_919177.1 KEGG: sco:SCO4527 integral membrane protein YP_919178.1 PFAM: type II secretion system protein E; KEGG: sco:SCO4526 protein kinase YP_919179.1 KEGG: sco:SCO4525 hypothetical protein YP_919180.1 PFAM: SAF domain; KEGG: fra:Francci3_1738 putative membrane protein YP_919181.1 KEGG: sco:SCP1.166 putative atp/gtp-binding protein YP_919183.1 PFAM: regulatory protein, ArsR; KEGG: sth:STH2610 hypothetical protein YP_919187.1 PFAM: protein of unknown function DUF1016; KEGG: cch:Cag_0721 hypothetical protein YP_919189.1 KEGG: rha:RHA1_ro08604 hypothetical protein YP_919190.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: rha:RHA1_ro10013 possible chromosome partitioning protein ParA YP_919196.1 PFAM: helicase domain protein; SMART: DEAD-like helicases-like; KEGG: nfa:pnf11080 hypothetical protein YP_919197.1 PFAM: protein of unknown function DUF1173; KEGG: mes:Meso_4154 protein of unknown function DUF1173 YP_919199.1 KEGG: mmc:Mmcs_5629 hypothetical protein YP_919207.1 KEGG: rha:RHA1_ro07281 hypothetical protein YP_919209.1 PFAM: SMC domain protein; KEGG: rsp:RSP_3757 hypothetical protein YP_919210.1 KEGG: rsp:RSP_3756 putative DNA helicase II / ATP-dependent DNA helicase PcrA YP_919215.1 PFAM: phage Gp37Gp68 family protein; KEGG: mbo:Mb2753 hypothetical protein YP_919216.1 KEGG: mbo:Mb2754c hypothetical protein YP_919217.1 KEGG: fra:Francci3_2839 McrBC 5-methylcytosine restriction system component-like YP_919218.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: fra:Francci3_2840 AAA_5 ATPase associated with various cellular activities YP_919219.1 KEGG: tfu:Tfu_0724 putative type II DNA modification enzyme YP_919220.1 PFAM: helicase domain protein; SMART: DEAD-like helicases-like; KEGG: dge:Dgeo_1544 helicase-like protein YP_919221.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: dge:Dgeo_1543 DEAD/DEAH box helicase-like protein YP_919225.1 PFAM: C-5 cytosine-specific DNA methylase; KEGG: nfa:nfa40370 hypothetical protein YP_919227.1 PFAM: helicase domain protein; KEGG: mmc:Mmcs_0813 helicase-like protein YP_919228.1 KEGG: net:Neut_0370 conserved hypothetical protein YP_919229.1 PFAM: CopG domain protein DNA-binding domain protein; YfbU family protein; KEGG: blo:BL0816 hypothetical protein YP_919231.1 KEGG: mmc:Mmcs_0812 hypothetical protein YP_919232.1 PFAM: helicase domain protein; KEGG: mmc:Mmcs_0811 helicase-like protein YP_919233.1 PFAM: transposase, IS4 family protein; KEGG: mmc:Mmcs_5428 TnpC protein YP_919234.1 SMART: DEAD-like helicases-like; KEGG: mmc:Mmcs_0811 helicase-like protein YP_919235.1 KEGG: nfa:nfa41400 putative Rossmann-fold nucleotide-binding protein YP_919236.1 PFAM: SMF family protein; KEGG: sma:SAV2631 putative DNA processing Smf-family protein YP_919238.1 KEGG: tfu:Tfu_2217 hypothetical protein YP_919239.1 PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: fra:Francci3_3532 phage integrase YP_919240.1 PFAM: phage integrase family protein; KEGG: rha:RHA1_ro10276 possible DNA integrase/recombinase YP_919244.1 PFAM: ParB domain protein nuclease; KEGG: rha:RHA1_ro03182 possible chromosome partitioning protein-like protein YP_919247.1 PFAM: TOPRIM domain protein; DNA primase catalytic core, N-terminal domain; SMART: Toprim sub domain protein; KEGG: mmc:Mmcs_1430 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member-like protein YP_919248.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: psb:Psyr_3605 trimethylamine-N-oxide reductase (cytochrome c) YP_919253.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: bja:blr3678 putative oxidoreductase YP_919254.1 PFAM: methane/phenol/toluene hydroxylase; KEGG: fra:Francci3_2520 methane monooxygenase YP_919255.1 PFAM: monooxygenase component MmoB/DmpM YP_919256.1 PFAM: methane/phenol/toluene hydroxylase; KEGG: fra:Francci3_2518 methane/phenol/toluene hydroxylase YP_919257.1 PFAM: Methionine synthase, vitamin-B12 independent; KEGG: sso:SSO0407 5-methyltetrahydropteroyltriglutamate- homocysteine methyltransferase YP_919258.1 PFAM: CoA-binding domain protein; KEGG: rxy:Rxyl_2544 CoA-binding protein YP_919259.1 KEGG: rxy:Rxyl_1583 glutaconate CoA-transferase YP_919260.1 PFAM: coenzyme A transferase; KEGG: bxe:Bxe_A2751 putative acyl CoA-transferase subunit A YP_919261.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bbr:BB1748 short chain dehydrogenase YP_919262.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: ttj:TTHA1835 NADH oxidase YP_919263.1 PFAM: (2R)-phospho-3-sulfolactate synthase, ComA; KEGG: sru:SRU_0020 phosphosulfolactate synthase YP_919264.1 KEGG: mac:MA3750 hypothetical protein YP_919265.1 PFAM: fumarate lyase; KEGG: pae:PA3517 probable lyase YP_919266.1 PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: pab:PAB2303 1-aminocyclopropane-1-carboxylate deaminase YP_919267.1 PFAM: fumarate lyase; KEGG: reu:Reut_B3820 argininosuccinate lyase YP_919268.1 PFAM: phosphoadenosine phosphosulfate reductase; KEGG: sma:SAV2129 putative phosphoadenosine phosphosulfate reductase YP_919269.1 KEGG: sus:Acid_3101 succinate-semialdehyde dehydrogenase (NAD(P)(+)) YP_919270.1 KEGG: sma:SAV7236 hypothetical protein YP_919271.1 KEGG: aba:Acid345_0842 hypothetical protein YP_919272.1 KEGG: nfa:pnf2590 putative alkylmercury lyase YP_919273.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: mba:Mbar_A0777 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase YP_919274.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: tte:TTE1674 dihydrolipoamide dehydrogenase/glutathione oxidoreductase and related enzymes YP_919275.1 KEGG: aba:Acid345_0842 hypothetical protein YP_919276.1 KEGG: sma:SAV7236 hypothetical protein YP_919277.1 PFAM: Integrase, catalytic region; KEGG: mmc:Mmcs_3191 integrase, catalytic region YP_919278.1 KEGG: sma:SAV7236 hypothetical protein YP_919279.1 PFAM: luciferase family protein; KEGG: nfa:nfa26250 hypothetical protein YP_919280.1 KEGG: sus:Acid_3101 succinate-semialdehyde dehydrogenase (NAD(P)(+)) YP_919281.1 PFAM: phosphoadenosine phosphosulfate reductase; KEGG: sma:SAV2129 putative phosphoadenosine phosphosulfate reductase YP_919282.1 PFAM: fumarate lyase; KEGG: reu:Reut_B3820 argininosuccinate lyase YP_919283.1 PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: pab:PAB2303 1-aminocyclopropane-1-carboxylate deaminase YP_919284.1 PFAM: fumarate lyase; KEGG: pau:PA14_18830 putative lyase YP_919285.1 KEGG: mhu:Mhun_1798 hypothetical protein YP_919286.1 PFAM: (2R)-phospho-3-sulfolactate synthase, ComA; KEGG: sru:SRU_0020 phosphosulfolactate synthase YP_919287.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; KEGG: ttj:TTHA1835 NADH oxidase YP_919288.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: tfu:Tfu_1466 short-chain alcohol dehydrogenase YP_919289.1 PFAM: coenzyme A transferase; KEGG: nph:NP6034A 3-oxoacid CoA-transferase , alpha subunit YP_919290.1 KEGG: rxy:Rxyl_1583 glutaconate CoA-transferase YP_919291.1 PFAM: CoA-binding domain protein; KEGG: rxy:Rxyl_2544 CoA-binding protein YP_919294.1 PFAM: Patatin; KEGG: rha:RHA1_ro01898 possible lipid acyl hydrolase YP_919295.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sco:SCO7117 ferredoxin reductase YP_919296.1 PFAM: GTP cyclohydrolase I; KEGG: nfa:nfa31470 putative GTP cyclohydrolase I YP_919297.1 KEGG: rha:RHA1_ro04235 possible membrane protein YP_919298.1 KEGG: mbo:Mb2651 hypothetical protein YP_919299.1 KEGG: ade:Adeh_3852 sigma-24 (FecI-like) YP_919301.1 KEGG: bcz:BCZK2544 hypothetical protein YP_919302.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: mpa:MAP2723c hypothetical protein YP_919303.1 KEGG: rha:RHA1_ro08094 hypothetical protein YP_919304.1 paralogs to the E1 component of pyruvate dehydrogenase subunit E1 YP_919305.1 KEGG: mpa:MAP2725c hypothetical protein YP_919306.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mpa:MAP2726c FdxA YP_919307.1 KEGG: sco:SCO7426 hypothetical protein YP_919308.1 TIGRFAM: ornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: mmc:Mmcs_0992 ornithine aminotransferase YP_919309.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: rha:RHA1_ro08265 possible carboxymuconolactone decarboxylase YP_919310.1 PFAM: cytochrome c oxidase, subunit I; KEGG: sma:SAV6048 putative cytochrome c oxidase subunit I YP_919311.1 KEGG: sco:SCO3606 regulator YP_919312.1 PFAM: band 7 protein; KEGG: mmc:Mmcs_1484 band 7 protein YP_919313.1 PFAM: protein of unknown function DUF488; KEGG: sco:SCO7620 hypothetical protein YP_919314.1 catalyzes the reversible formation of D-erythrose 4-phosphate and D-fructose 6-phosphate from sedoheptulose 7-phosphate and D-glyceraldehyde 3-phosphate YP_919315.1 PFAM: UspA domain protein; KEGG: fra:Francci3_2760 UspA YP_919316.1 KEGG: rha:RHA1_ro04235 possible membrane protein YP_919317.1 PFAM: glyceraldehyde 3-phosphate dehydrogenase; KEGG: sma:SAV6296 putative glyceraldehyde-3-phosphate dehydrogenase YP_919318.1 KEGG: ade:Adeh_3192 hypothetical protein YP_919319.1 PFAM: glycoside hydrolase 15-related; KEGG: sco:SCO6944 hypothetical protein YP_919320.1 KEGG: sco:SCO6164 putative DnaK suppressor protein YP_919321.1 KEGG: cch:Cag_0577 hypothetical protein YP_919323.1 KEGG: mmc:Mmcs_4843 hypothetical protein YP_919324.1 PFAM: phage Gp37Gp68 family protein; KEGG: mbo:Mb2753 hypothetical protein YP_919327.1 KEGG: mmc:Mmcs_0815 hypothetical protein YP_919328.1 KEGG: mmc:Mmcs_0814 hypothetical protein YP_919329.1 KEGG: nfa:pnf1910 hypothetical protein YP_919330.1 KEGG: nfa:pnf1900 hypothetical protein YP_919331.1 PFAM: phage integrase family protein; KEGG: nfa:pnf1890 hypothetical protein YP_919332.1 KEGG: rha:RHA1_ro03205 hypothetical protein YP_919333.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: rha:RHA1_ro03562 hypothetical protein YP_919334.1 KEGG: cch:Cag_1216 hypothetical protein YP_919336.1 KEGG: ret:RHE_CH02031 putative gualylate cyclase protein YP_919337.1 PFAM: transcriptional activator domain; Tetratricopeptide TPR_4; KEGG: mlo:mlr2433 probable regulatory protein YP_919338.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: hch:HCH_03658 SAM-dependent methyltransferase YP_919340.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: fal:FRAAL2981 putative two-component sensor YP_919341.1 PFAM: regulatory protein, LuxR; response regulator receiver; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sco:SCO3640 putative two-component system regulator YP_919342.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: rha:RHA1_ro04202 response regulator, two-component system YP_919343.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: rha:RHA1_ro04201 sensor kinase, two-component system YP_919346.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: sma:SAV4680 two-component system sensor kinase YP_919347.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: sco:SCO3640 putative two-component system regulator YP_919350.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: rha:RHA1_ro04201 sensor kinase, two-component system YP_919351.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: rha:RHA1_ro04202 response regulator, two-component system YP_919352.1 PFAM: protein of unknown function DUF1326; KEGG: mlo:mll4476 hypothetical protein YP_919353.1 KEGG: bca:BCE_A0200 hypothetical protein YP_919354.1 PFAM: FAD linked oxidase domain protein; Berberine/berberine domain protein; KEGG: pol:Bpro_1506 FAD linked oxidase-like YP_919355.1 PFAM: helix-turn-helix, HxlR type; KEGG: mbo:Mb1754c hypothetical protein YP_919356.1 PFAM: regulatory protein, LuxR; KEGG: mmc:Mmcs_0427 transcriptional regulator, LuxR family YP_919357.1 PFAM: protein of unknown function DUF1486; KEGG: sma:SAV3997 hypothetical protein YP_919359.1 PFAM: alpha/beta hydrolase fold; KEGG: pau:PA14_28630 putative hydrolase YP_919360.1 KEGG: neu:NE2346 possible hydrolase YP_919361.1 PFAM: regulatory protein, LuxR; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: mpa:MAP3352c hypothetical protein YP_919362.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: bja:bll8020 putative ubiquinone/menaquinone biosynthesis methyltransferase YP_919363.1 PFAM: regulatory protein, LuxR; Tetratricopeptide TPR_4; KEGG: mmc:Mmcs_0427 transcriptional regulator, LuxR family YP_919365.1 KEGG: fra:Francci3_1530 conserved hypothetical protein YP_919368.1 PFAM: protein of unknown function DUF1486; KEGG: sma:SAV3997 hypothetical protein YP_919369.1 PFAM: regulatory protein, LuxR; KEGG: mmc:Mmcs_0427 transcriptional regulator, LuxR family YP_919371.1 PFAM: transcriptional activator domain; Tetratricopeptide TPR_4; KEGG: ade:Adeh_3289 transcriptional regulator, SARP family YP_919372.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bja:bll4353 2-deoxy-D-gluconate 3-dehydrogenase YP_919373.1 PFAM: protein of unknown function DUF1326; KEGG: bpm:BURPS1710b_1552 hypothetical protein YP_919374.1 KEGG: rxy:Rxyl_0427 hypothetical protein YP_919375.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: rha:RHA1_ro03562 hypothetical protein YP_919379.1 PFAM: TOPRIM domain protein; DNA primase catalytic core, N-terminal domain; SMART: Toprim sub domain protein; KEGG: mmc:Mmcs_1430 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member-like protein YP_919380.1 PFAM: regulatory protein, TetR; Tetracyclin repressor domain protein; KEGG: rha:RHA1_ro02950 probable transcriptional regulator, TetR family YP_919381.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cyb:CYB_1206 drug exporter-1 ABC transporter (DrugE1) family, ATP-binding protein YP_919382.1 PFAM: ABC-2 type transporter; KEGG: ape:APE2512 putative ABC-2 type transport system permease protein YP_919383.1 KEGG: cya:CYA_1761 putative ABC-2 type transporter, permease protein YP_919384.1 PFAM: alkylmercury lyase; KEGG: mmr:Mmar10_2330 alkylmercury lyase YP_919387.1 PFAM: regulatory protein, MerR; KEGG: bam:Bamb_1782 transcriptional regulator, MerR family YP_919388.1 TIGRFAM: mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: cjk:jk1442 putative mercuric reductase YP_919389.1 PFAM: regulatory protein, MerR; KEGG: cjk:jk1441 putative transcriptional regulator (MerR family) YP_919390.1 PFAM: Bile acid:sodium symporter; KEGG: fal:FRAAL5305 putative arsenite efflux pump or related permease YP_919391.1 KEGG: nfa:nfa28290 hypothetical protein YP_919392.1 PFAM: regulatory protein, MerR; KEGG: nfa:pnf2580 putative transcriptional regulator YP_919393.1 PFAM: Redoxin domain protein; Thioredoxin domain; KEGG: mbo:Mb1704 probable conserved lipoprotein DsbF YP_919394.1 PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: mbo:Mb2902c probable conserved integral membrane protein YP_919395.1 KEGG: nfa:nfa28290 hypothetical protein YP_919396.1 PFAM: regulatory protein, MerR; KEGG: nfa:pnf2580 putative transcriptional regulator YP_919399.1 PFAM: protein of unknown function UPF0060; KEGG: mbo:Mb2672c hypothetical protein YP_919400.1 PFAM: protein of unknown function UPF0157; KEGG: mmc:Mmcs_3004 dephospho-CoA kinase YP_919402.1 KEGG: rfr:Rfer_3556 hypothetical protein YP_919404.1 PFAM: transcriptional regulator domain protein; transcriptional activator domain; Tetratricopeptide TPR_4; KEGG: nfa:nfa34460 putative transcriptional regulator YP_919407.1 KEGG: chu:CHU_0224 hypothetical protein YP_919408.1 PFAM: MMPL domain protein; KEGG: sco:SCO6091 integral membrane protein YP_919410.1 PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: sco:SCO3537 DNA-binding protein YP_919411.1 KEGG: gsu:GSU0763 helicase, putative YP_919412.1 KEGG: chu:CHU_0041 hypothetical protein YP_921238.1 KEGG: fra:Francci3_0001 chromosomal replication initiator protein DnaA; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator, DnaA C-terminal domain; Chromosomal replication initiator, DnaA; SMART: AAA ATPase YP_921239.1 binds the polymerase to DNA and acts as a sliding clamp YP_921240.1 similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate YP_921241.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA YP_921242.1 PFAM: protein of unknown function DUF721; KEGG: sco:SCO3875 conserved hypothetical protein YP_921243.1 negatively supercoils closed circular double-stranded DNA YP_921244.1 negatively supercoils closed circular double-stranded DNA YP_921245.1 KEGG: sma:SAV4323 hypothetical protein YP_921246.1 PFAM: plasmid pRiA4b ORF-3 family protein; KEGG: cef:CE1215 hypothetical protein YP_921247.1 PFAM: fatty acid hydroxylase; KEGG: mmc:Mmcs_2728 fatty acid hydroxylase YP_921248.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: mmc:Mmcs_2727 regulatory protein GntR, HTH YP_921249.1 KEGG: tfu:Tfu_0164 hypothetical protein YP_921250.1 KEGG: sma:SAV2833 hypothetical protein YP_921251.1 PFAM: Patatin; KEGG: fal:FRAAL0742 hypothetical protein YP_921252.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: fal:FRAAL0743 hypothetical protein; putative signal peptide; putative acyltransferase domain YP_921253.1 KEGG: aor:AO090120000081 predicted protein Pfam: IncA TolA PROSITE: ALA_RICH ARG_RICH GLU_RICH GLY_RICH YP_921254.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: pac:PPA0718 probable peptidyl-prolyl cis-trans isomerase A YP_921255.1 PFAM: Rhomboid family protein; KEGG: mmc:Mmcs_5148 rhomboid-like protein YP_921256.1 KEGG: fra:Francci3_0932 hypothetical protein YP_921258.1 PFAM: protein of unknown function DUF881; KEGG: pac:PPA0183 membrane spanning protein DUF881 YP_921259.1 PFAM: protein kinase; PASTA domain containing protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: tfu:Tfu_3066 tyrosine protein kinase:serine/threonine protein kinase:PASTA YP_921260.1 PFAM: protein of unknown function RIO1; protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: tfu:Tfu_3065 tyrosine protein kinase:serine/threonine protein kinase YP_921261.1 PFAM: penicillin-binding protein, transpeptidase; KEGG: fal:FRAAL6753 putative penicillin-binding protein PbpA YP_921262.1 PFAM: cell cycle protein; KEGG: fal:FRAAL6752 putative cell division protein FtsW YP_921263.1 PFAM: protein phosphatase 2C domain protein; KEGG: sco:SCO3845 putative protein phosphatase YP_921264.1 PFAM: Forkhead-associated protein; KEGG: tfu:Tfu_3061 FHA domain protein YP_921265.1 PFAM: Forkhead-associated protein; KEGG: pac:PPA0189 conserved protein containing FHA domain YP_921266.1 PFAM: GCN5-related N-acetyltransferase; FR47 domain protein; KEGG: sco:SCO4496 acetyltransferase YP_921267.1 PFAM: major facilitator superfamily MFS_1; KEGG: rxy:Rxyl_2414 major facilitator superfamily MFS_1 YP_921268.1 PFAM: MaoC domain protein dehydratase; KEGG: bja:bll6394 putative monoamine oxidase regulatory protein YP_921269.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; KEGG: mka:MK0828 succinate dehydrogenase/fumarate reductase, flavoprotein subunit YP_921270.1 PFAM: dihydrodipicolinate synthetase; KEGG: sco:SCO1889 dihydropicolinate synthase YP_921271.1 catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate YP_921272.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: sco:SCO6565 transcriptional regulator YP_921273.1 PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: rxy:Rxyl_2477 thiamine pyrophosphate enzyme-like TPP binding region YP_921274.1 PFAM: aldehyde dehydrogenase; KEGG: nfa:nfa35030 putative aldehyde dehydrogenase YP_921275.1 PFAM: Dimethylmenaquinone methyltransferase; KEGG: pol:Bpro_2296 dimethylmenaquinone methyltransferase YP_921276.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: mes:Meso_2971 L-carnitine dehydratase/bile acid-inducible protein F YP_921277.1 PFAM: MmgE/PrpD family protein; KEGG: bur:Bcep18194_B1168 MmgE/PrpD family protein YP_921278.1 PFAM: extracellular solute-binding protein, family 1; KEGG: mes:Meso_4520 extracellular solute-binding protein, family 1 YP_921279.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lin:lin0218 similar to sugar ABC transporters, permease proteins YP_921280.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tte:TTE1936 sugar permeases YP_921281.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ape:APE1484 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase YP_921282.1 PFAM: MaoC domain protein dehydratase YP_921283.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: ppu:PP_3725 acyl-CoA dehydrogenase, putative YP_921284.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: mes:Meso_2971 L-carnitine dehydratase/bile acid-inducible protein F YP_921285.1 PFAM: GntR domain protein; KEGG: sco:SCO1410 GntR-family transcriptional regulator YP_921286.1 TIGRFAM: Dyp-type peroxidase family; KEGG: rpc:RPC_1956 Tat-translocated enzyme YP_921287.1 KEGG: pst:PSPTO_4772 hypothetical protein YP_921291.1 KEGG: sag:SAG0550 hypothetical protein YP_921292.1 PFAM: Glycosyl hydrolase family 32, N terminal domain protein; SMART: glycoside hydrolase, family 32; KEGG: hma:rrnAC1479 sucrose-6-phosphate hydrolase YP_921293.1 KEGG: afm:Afu5g00510 hypothetical protein YP_921294.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sma:SAV6288 LacI-family transcriptional regulator YP_921295.1 PFAM: extracellular solute-binding protein, family 1; KEGG: oih:OB0774 sugar ABC transporter sugar-binding protein YP_921296.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB0775 sugar ABC transporter permease YP_921297.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB0776 sugar ABC transporter permease YP_921298.1 PFAM: PfkB domain protein; KEGG: rha:RHA1_ro02811 fructokinase YP_921299.1 PFAM: transposase IS3/IS911 family protein; KEGG: mbo:Mb2839c probable transposase YP_921300.1 PFAM: Integrase, catalytic region; KEGG: mmc:Mmcs_5505 integrase, catalytic region YP_921301.1 KEGG: ret:RHE_PE00355 putative inulin fructotransferase protein YP_921303.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: sco:SCO3362 hypothetical protein YP_921304.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: rha:RHA1_ro03337 probable leucine-responsive regulator YP_921305.1 PFAM: ornithine cyclodeaminase/mu-crystallin; Shikimate/quinate 5-dehydrogenase; KEGG: bcz:BCZK0803 ornithine cyclodeaminase YP_921306.1 PFAM: helix-turn-helix domain protein; KEGG: nfa:nfa13110 putative DNA-binding protein YP_921307.1 KEGG: shm:Shewmr7_0115 hypothetical protein YP_921308.1 KEGG: cgb:cg1413 secreted sugar-binding protein YP_921309.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO0811 putative ABC transporter ATP-binding protein YP_921310.1 PFAM: inner-membrane translocator; KEGG: sha:SH0178 ribose ABC transporter permease YP_921311.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bpm:BURPS1710b_3485 short chain dehydrogenase YP_921312.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: mta:Moth_1967 5-oxoprolinase (ATP-hydrolyzing) YP_921313.1 PFAM: Hydantoinase B/oxoprolinase; KEGG: gka:GK2893 N-methylhydantoinase B (ATP-hydrolyzing) YP_921314.1 PFAM: peptidase M19, renal dipeptidase; KEGG: mlo:mlr6286 similar to dipeptidase YP_921315.1 PFAM: FAD dependent oxidoreductase; KEGG: sma:SAV1734 oxidoreductase YP_921316.1 KEGG: sma:SAV1733 hypothetical protein YP_921317.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; BFD domain protein [2Fe-2S]-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sco:SCO6291 secreted oxidase YP_921318.1 PFAM: dihydrodipicolinate synthetase; KEGG: sma:SAV1731 putative dihydrodipicolinate synthase YP_921319.1 PFAM: aldehyde dehydrogenase; KEGG: rha:RHA1_ro02898 aldehyde dehydrogenase (NADP+) YP_921320.1 KEGG: sma:SAV2725 transcriptional regulator YP_921321.1 PFAM: Proline dehydrogenase; KEGG: tfu:Tfu_0434 proline dehydrogenase YP_921322.1 TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: tfu:Tfu_0433 delta-1-pyrroline-5-carboxylate dehydrogenase 1 YP_921323.1 PFAM: beta-lactamase domain protein; KEGG: plu:plu2238 hypothetical protein YP_921324.1 TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: tfu:Tfu_1968 allophanate hydrolase subunit 2 YP_921325.1 PFAM: protein of unknown function DUF1445; KEGG: pst:PSPTO_5379 hypothetical protein YP_921326.1 PFAM: Asp/Glu racemase; KEGG: chy:CHY_1338 hydantoin racemase YP_921327.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: mlo:mll9131 hydantoinase YP_921328.1 PFAM: protein of unknown function DUF917; KEGG: mlo:mll9130 hypothetical protein YP_921329.1 KEGG: sco:SCO1052 regulatory protein YP_921330.1 PFAM: protein of unknown function DUF917; KEGG: mes:Meso_1849 protein of unknown function DUF917 YP_921331.1 KEGG: rha:RHA1_ro02908 possible ABC sugar transporter, substrate binding component YP_921332.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rha:RHA1_ro09082 ABC sugar transporter, ATP-binding component YP_921333.1 PFAM: inner-membrane translocator; KEGG: rha:RHA1_ro11174 ABC sugar transporter, permease component YP_921334.1 PFAM: peptidase M19, renal dipeptidase; KEGG: dsy:DSY1937 hypothetical protein YP_921337.1 KEGG: rha:RHA1_ro00813 possible lipoate-protein ligase A YP_921338.1 PFAM: peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins; KEGG: mmc:Mmcs_0342 peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins YP_921339.1 PFAM: aldo/keto reductase; KEGG: sma:SAV1050 oxidoreductase YP_921340.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: dge:Dgeo_2864 alcohol dehydrogenase GroES-like YP_921341.1 KEGG: sco:SCO1740 hypothetical protein YP_921344.1 PFAM: cyclase/dehydrase YP_921345.1 PFAM: amino acid-binding ACT domain protein; malic enzyme domain protein; malic enzyme, NAD-binding; KEGG: tfu:Tfu_2390 malate dehydrogenase (oxaloacetate decarboxylating) YP_921346.1 PFAM: MMPL domain protein; KEGG: mmc:Mmcs_0519 MmpL YP_921347.1 PFAM: regulatory protein, MarR; KEGG: rxy:Rxyl_1740 transcriptional regulator, MarR family YP_921348.1 PFAM: ROK family protein; KEGG: lxx:Lxx09960 glucokinase YP_921349.1 PFAM: transcriptional regulator PadR family protein; KEGG: nfa:nfa31300 putative transcriptional regulator YP_921350.1 PFAM: protein of unknown function DUF88; KEGG: dvu:DVU0091 hypothetical protein YP_921351.1 PFAM: protein of unknown function DUF1503; KEGG: sco:SCO1068 hypothetical protein YP_921352.1 KEGG: tfu:Tfu_1447 ABC-type multidrug transport system ATPase component; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_921353.1 PFAM: ABC-2 type transporter; KEGG: sco:SCO5382 putative ABC transporter, integral membrane subunit YP_921354.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; fatty acid desaturase; KEGG: nfa:nfa46180 putative alkane-1-monooxygenase YP_921355.1 PFAM: regulatory protein, TetR; KEGG: mmc:Mmcs_3220 transcriptional regulator, TetR family YP_921356.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV4524 transmembrane efflux protein YP_921359.1 TIGRFAM: formyltetrahydrofolate deformylase; PFAM: formyl transferase domain protein; amino acid-binding ACT domain protein; KEGG: bte:BTH_I0496 formyltetrahydrofolate deformylase YP_921360.1 KEGG: nha:Nham_2367 hypothetical protein YP_921362.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: mmc:Mmcs_1554 alcohol dehydrogenase, zinc-binding protein YP_921363.1 PFAM: peptidase M13, neprilysin; peptidase M13; KEGG: fal:FRAAL4107 zinc metalloendopeptidase YP_921365.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sma:SAV2450 putative ATP-dependent DNA helicase YP_921368.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro01949 multidrug resistance transporter, MFS superfamily YP_921369.1 PFAM: glutathione peroxidase; KEGG: nfa:nfa46650 putative glutathione peroxidase YP_921370.1 PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sco:SCO1167 helicase YP_921371.1 PFAM: zinc finger, SWIM domain protein; KEGG: sma:SAV368 hypothetical protein YP_921372.1 PFAM: regulatory protein, TetR; KEGG: fra:Francci3_2248 transcriptional regulator, TetR family YP_921373.1 PFAM: protein of unknown function DUF156; KEGG: cef:CE0057 hypothetical protein YP_921374.1 PFAM: protein of unknown function DUF302; KEGG: nfa:nfa41010 hypothetical protein YP_921375.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: nfa:nfa18780 putative thioredoxin YP_921376.1 PFAM: MMPL domain protein; KEGG: nfa:pnf2660 hypothetical protein YP_921377.1 KEGG: cgb:cg1481 hypothetical protein YP_921378.1 PFAM: Hyalin; KEGG: hch:HCH_03306 protein of unknown function (DUF1555) YP_921379.1 PFAM: carboxyl transferase; KEGG: sco:SCO2776 acetyl/propionyl CoA carboxylase, beta subunit YP_921380.1 PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: rso:RSc0265 probable acyl-CoA carboxylase alpha chain protein YP_921381.1 PFAM: pyruvate carboxyltransferase; KEGG: sma:SAV5276 putative hydroxymethylglutaryl-CoA lyase YP_921382.1 KEGG: syd:Syncc9605_2166 hypothetical protein YP_921385.1 KEGG: pac:PPA2088 hypothetical protein YP_921386.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys YP_921388.1 PFAM: Rhodanese domain protein; KEGG: sco:SCO3839 hypothetical protein YP_921389.1 PFAM: Formamidopyrimidine-DNA glycolase; KEGG: lxx:Lxx00140 formamidopyrimidine-DNA glycosylase YP_921391.1 KEGG: rha:RHA1_ro02400 hypothetical protein YP_921392.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mlo:mlr1095 hypothetical protein YP_921393.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sma:SAV4224 putative phosphodiesterase YP_921394.1 PFAM: SEC-C motif domain protein; KEGG: sma:SAV4226 hypothetical protein YP_921395.1 KEGG: sma:SAV5728 hypothetical protein YP_921396.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: rha:RHA1_ro05084 probable adenylate cyclase YP_921397.1 PFAM: cyclic nucleotide-binding; KEGG: mmc:Mmcs_2490 cyclic nucleotide-binding protein YP_921398.1 catalyzes the degradation of arginine to citruline and ammonia YP_921399.1 PFAM: protein of unknown function UPF0016; KEGG: fal:FRAAL0931 hypothetical protein YP_921400.1 PFAM: protein of unknown function DUF111; KEGG: cef:CE2361 hypothetical protein YP_921401.1 KEGG: syc:syc0382_d circadian phase modifier CpmA YP_921402.1 PFAM: prephenate dehydratase; KEGG: rpa:RPA3695 chorismate mutase/prephenate dehydratase YP_921403.1 KEGG: sth:STH3328 hypothetical protein YP_921404.1 PFAM: Mycobacterium tuberculosis paralogous family 11; KEGG: rha:RHA1_ro02638 hypothetical protein YP_921405.1 PFAM: phosphoesterase, PA-phosphatase related; diacylglycerol kinase, catalytic region; KEGG: lxx:Lxx21980 hypothetical protein YP_921406.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_921407.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; KEGG: pac:PPA2205 hydrolase (HAD superfamily) YP_921408.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sco:SCO4311 hypothetical protein YP_921409.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; KEGG: sco:SCO3950 hypothetical protein YP_921411.1 KEGG: tfu:Tfu_0071 hypothetical protein YP_921412.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sma:SAV4368 quinone oxidoreductase YP_921413.1 KEGG: sco:SCO3828 molybdopterin-guanine dinucleotide biosynthesis protein YP_921414.1 KEGG: sma:SAV4365 molybdopterin-guanine dinucleotide biosynthesis protein YP_921415.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: nfa:nfa46820 putative hydrolase YP_921417.1 PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: fra:Francci3_3765 biotin/lipoyl attachment YP_921420.1 PFAM: regulatory protein, LuxR; Helix-turn-helix, type 11 domain protein; Sigma-70, region 4 type 2; KEGG: sma:SAV86 erythropoiesis-stimulating protein YP_921421.1 KEGG: sco:SCO2686 LuxR-family transcriptional regulator YP_921422.1 catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP YP_921423.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: mbu:Mbur_0510 external sensor signal transduction histidine kinase YP_921424.1 TIGRFAM: phosphate binding protein; KEGG: tth:TTC1726 phosphate-binding protein YP_921425.1 KEGG: rxy:Rxyl_3061 hypothetical protein YP_921426.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: sth:STH749 two-component sensor kinase, probably involved in phosphate sensing YP_921427.1 KEGG: mtc:MT1192 hypothetical protein YP_921428.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: dge:Dgeo_2243 transcriptional regulator, LacI family YP_921429.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: sco:SCO2226 bi-functional protein (secreted alpha-amylase/dextrinase) YP_921430.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: sil:SPO1469 3-ketosteroid dehydrogenase, putative YP_921431.1 KEGG: sil:SPO1461 hypothetical protein YP_921432.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: bxe:Bxe_B1003 putative succinate dehydrogenase/fumarate reductase, flavoprotein subunit YP_921433.1 PFAM: isochorismatase hydrolase; KEGG: bur:Bcep18194_C7071 isochorismatase hydrolase YP_921434.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: sil:SPO0595 gluconate 5-dehydrogenase YP_921435.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: bbr:BB3064 hypothetical protein YP_921436.1 KEGG: bbr:BB0718 carboxyvinyl-carboxyphosphonate phosphorylmutase YP_921437.1 KEGG: rme:Rmet_5998 hypothetical protein YP_921438.1 PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: nfa:nfa33590 hypothetical protein YP_921439.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mmc:Mmcs_1630 glyoxalase/bleomycin resistance protein/dioxygenase YP_921440.1 PFAM: alpha/beta hydrolase fold; KEGG: ttj:TTHB237 2-hydroxymuconic semialdehyde hydrolase YP_921441.1 PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: bur:Bcep18194_B1413 acyl-CoA dehydrogenase-like YP_921442.1 PFAM: alpha/beta hydrolase fold; KEGG: ttj:TTHB237 2-hydroxymuconic semialdehyde hydrolase YP_921443.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: rha:RHA1_ro04906 hypothetical protein YP_921445.1 KEGG: fal:FRAAL4811 putative superfamily I DNA and RNA helicases YP_921447.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc02358 putative high-affinity branched-chain amino acid transport ATP-binding ABC transporter protein YP_921448.1 PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: dra:DRA0261 branched-chain amino acid transport system ATP-binding protein YP_921449.1 PFAM: inner-membrane translocator; KEGG: gka:GK2979 branched-chain amino acid ABC transporter (permease) YP_921450.1 KEGG: nfa:nfa52540 hypothetical protein YP_921451.1 PFAM: regulatory protein, TetR; KEGG: mpa:MAP1732c hypothetical protein YP_921452.1 PFAM: regulatory protein, TetR; KEGG: mpa:MAP1732c hypothetical protein YP_921453.1 PFAM: flavin reductase domain protein, FMN-binding; KEGG: nar:Saro_1462 flavin reductase-like, FMN-binding YP_921454.1 PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: mtc:MT0390 carbon monoxide dehydrogenase, medium subunit, putative YP_921455.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rha:RHA1_ro05231 possible carbon monoxide dehydrogenase YP_921456.1 TIGRFAM: carbon-monoxide dehydrogenase, large subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: mmc:Mmcs_0491 carbon-monoxide dehydrogenase, large subunit YP_921457.1 KEGG: mbo:Mb0378c hypothetical protein YP_921458.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: mbo:Mb0384 probable transcriptional regulatory protein (probably LysR-family) YP_921460.1 PFAM: molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: mmc:Mmcs_0489 carbon-monoxide dehydrogenase YP_921461.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rxy:Rxyl_0111 (2Fe-2S)-binding protein YP_921462.1 KEGG: rha:RHA1_ro05232 possible carbon monoxide dehydrogenase; TIGRFAM: carbon-monoxide dehydrogenase, large subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding YP_921463.1 PFAM: protein of unknown function DUF182; YHS domain protein; SMART: TRASH domain protein; KEGG: rha:RHA1_ro05233 hypothetical protein YP_921464.1 PFAM: carbon monoxide dehydrogenase subunit G; KEGG: rha:RHA1_ro05235 hypothetical protein YP_921470.1 PFAM: VWA containing CoxE family protein; SMART: von Willebrand factor, type A; KEGG: rxy:Rxyl_0115 VWA containing CoxE-like protein YP_921471.1 PFAM: ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rxy:Rxyl_0114 ATPase associated with various cellular activities, AAA_5 YP_921473.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: tfu:Tfu_0068 putative acyl-CoA dehydrogenase YP_921474.1 PFAM: regulatory protein, TetR; KEGG: tfu:Tfu_0069 putative transcriptional regulator YP_921475.1 TIGRFAM: NADPH-dependent F420 reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; KEGG: tfu:Tfu_0970 NADPH-dependent F420 reductase YP_921477.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: sma:SAV7039 sugar acetyltransferase YP_921478.1 KEGG: sco:SCO0502 hypothetical protein YP_921479.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: sth:STH843 two-component sensor histidine kinase YP_921480.1 PFAM: Cupin 2, conserved barrel domain protein YP_921481.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO6360 ABC transporter ATP-binding protein YP_921482.1 KEGG: fal:FRAAL2980 putative ABC transporter transmembrane protein YP_921483.1 TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V, RecC subunit; KEGG: mtc:MT0659 exodeoxyribonuclease V, gamma subunit YP_921484.1 TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: mmc:Mmcs_0900 exodeoxyribonuclease V, beta subunit YP_921485.1 KEGG: mpa:MAP4091c exodeoxyribonuclease V alpha chain; TIGRFAM: exodeoxyribonuclease V, alpha subunit; SMART: AAA ATPase YP_921486.1 PFAM: amino acid-binding ACT domain protein; KEGG: pac:PPA1121 hypothetical protein YP_921487.1 PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV5597 hypothetical protein YP_921489.1 PFAM: Mycobacterium tuberculosis paralogous family 11; KEGG: sma:SAV7465 hypothetical protein YP_921490.1 TIGRFAM: naphthoate synthase; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: nfa:nfa51380 putative dihydroxynaphtoic acid synthetase YP_921491.1 KEGG: cef:CE1017 hypothetical protein YP_921492.1 forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm YP_921493.1 PFAM: NAD(P) transhydrogenase, beta subunit; KEGG: mmc:Mmcs_0100 NAD(P) transhydrogenase, beta subunit YP_921496.1 KEGG: cya:CYA_2465 GTP-binding protein YP_921497.1 PFAM: Silent information regulator protein Sir2; KEGG: sal:Sala_2748 silent information regulator protein Sir2 YP_921498.1 KEGG: sco:SCO7393 lipoprotein YP_921499.1 KEGG: nfa:nfa18050 putative glycosyl hydrolase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain YP_921500.1 KEGG: lxx:Lxx02190 malto-oligosyl trehalose synthase; TIGRFAM: malto-oligosyltrehalose synthase; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain YP_921501.1 KEGG: mpa:MAP3262c GlgX_2; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain YP_921502.1 PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro04813 multidrug resistance transporter, MFS superfamily YP_921503.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rha:RHA1_ro08138 long-chain-acyl-CoA dehydrogenase YP_921504.1 PFAM: protein of unknown function DUF125, transmembrane; KEGG: sma:SAV6445 hypothetical protein YP_921505.1 TIGRFAM: 2'-5' RNA ligase; PFAM: 2',5' RNA ligase; KEGG: tfu:Tfu_0243 2',5' RNA ligase YP_921506.1 PFAM: RelA/SpoT domain protein; KEGG: lxx:Lxx23800 hypothetical protein YP_921507.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_921508.1 KEGG: tfu:Tfu_0025 hypothetical protein YP_921509.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: fal:FRAAL0635 tRNA-specific adenosine deaminase YP_921510.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: lxx:Lxx15560 lyase YP_921511.1 PFAM: ferredoxin-dependent glutamate synthase; KEGG: mmc:Mmcs_5268 ferredoxin-dependent glutamate synthase YP_921512.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: nfa:nfa32960 putative L-lactate dehydrogenase YP_921513.1 KEGG: rha:RHA1_ro04896 hypothetical protein YP_921514.1 KEGG: sye:Syncc9902_0128 hypothetical protein YP_921515.1 KEGG: rha:RHA1_ro00038 hypothetical protein YP_921516.1 KEGG: fra:Francci3_4502 putative signal-transduction protein with CBS domains YP_921517.1 KEGG: sco:SCO0174 putative DNA-binding protein YP_921519.1 KEGG: mbo:Mb3555c possible siderophore-binding protein YP_921520.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_921523.1 PFAM: ATPase associated with various cellular activities, AAA_5; KEGG: fal:FRAAL1932 hypothetical protein YP_921524.1 PFAM: VWA containing CoxE family protein; KEGG: fal:FRAAL1933 hypothetical protein YP_921525.1 KEGG: blo:BL1804 hypothetical protein YP_921527.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_921528.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: mbo:Mb1848 hypothetical protein YP_921529.1 PFAM: Redoxin domain protein; KEGG: fal:FRAAL5492 hypothetical protein; putative thiol:disulfide interchange protein YP_921530.1 the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli YP_921531.1 KEGG: pac:PPA2178 hypothetical protein YP_921532.1 KEGG: fal:FRAAL0085 hypothetical protein YP_921534.1 KEGG: nfa:nfa48960 hypothetical protein YP_921535.1 PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: sco:SCO5734 ATP/GTP binding protein (membrane protein) YP_921536.1 KEGG: ret:RHE_CH02708 hypothetical protein YP_921538.1 PFAM: protein of unknown function DUF909; KEGG: cgb:cg0672 hypothetical protein YP_921539.1 TIGRFAM: CD9/CD37/CD63 antigen; KEGG: sma:SAV2527 hypothetical protein YP_921540.1 KEGG: fal:FRAAL2961 hypothetical protein YP_921541.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: mmc:Mmcs_0380 peptidase S8 and S53, subtilisin, kexin, sedolisin YP_921542.1 PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: nfa:pnf1230 putative multicopper oxidase YP_921543.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rha:RHA1_ro11203 response regulator, two-component system YP_921544.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rha:RHA1_ro11204 histidine kinase YP_921545.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: rha:RHA1_ro11210 probable copper-exporting ATPase YP_921546.1 PFAM: protein of unknown function DUF305; KEGG: nfa:nfa38100 hypothetical protein YP_921547.1 PFAM: oxidoreductase, molybdopterin binding; KEGG: mpa:MAP2359c hypothetical protein YP_921548.1 KEGG: sco:SCO4067 DNA polymerase III subunit gamma; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase YP_921549.1 PFAM: conserved hypothetical protein 103; KEGG: rha:RHA1_ro04210 hypothetical protein YP_921550.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_921551.1 KEGG: sma:SAV4558 hypothetical protein YP_921552.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation. YP_921553.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde YP_921555.1 PFAM: metallophosphoesterase; KEGG: mmc:Mmcs_4826 metallophosphoesterase YP_921556.1 PFAM: GatB/Yqey domain protein; KEGG: tfu:Tfu_0108 hypothetical protein YP_921557.1 PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; PASTA domain containing protein; KEGG: tfu:Tfu_0109 PASTA YP_921558.1 PFAM: transcription factor WhiB; KEGG: sco:SCO3579 regulatory protein YP_921559.1 PFAM: Anion-transporting ATPase; KEGG: tfu:Tfu_0111 putative ion-transporting ATPase YP_921560.1 PFAM: Anion-transporting ATPase; KEGG: sco:SCO3577 ion-transporting ATPase YP_921561.1 KEGG: fal:FRAAL3148 succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (succinyl CoA:3-oxoacid CoA-transferase) (OXCT A); TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase YP_921562.1 KEGG: fra:Francci3_2503 3-oxoacid CoA-transferase, subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase YP_921563.1 PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: lxx:Lxx06230 RNA polymerase, sigma factor YP_921564.1 PFAM: sigma-70 region 4 domain protein; KEGG: lxx:Lxx06230 RNA polymerase, sigma factor YP_921565.1 TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: lxx:Lxx06230 RNA polymerase, sigma factor YP_921566.1 KEGG: fra:Francci3_4281 hypothetical protein YP_921567.1 PFAM: Endoribonuclease L-PSP; KEGG: sco:SCO3575 hypothetical protein YP_921568.1 PFAM: NUDIX hydrolase; KEGG: sma:SAV4589 hypothetical protein YP_921569.1 PFAM: beta-lactamase domain protein; KEGG: sco:SCO3572 hydrolase YP_921570.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: tfu:Tfu_0117 cyclic nucleotide-binding:bacterial regulatory protein, Crp YP_921571.1 KEGG: sma:SAV4593 putative endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop YP_921572.1 PFAM: Redoxin domain protein; KEGG: pac:PPA0224 hypothetical protein YP_921573.1 PFAM: NUDIX hydrolase; KEGG: sma:SAV4594 hypothetical protein YP_921574.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap; Colicin V production protein; KEGG: fra:Francci3_4292 colicin V production protein YP_921575.1 PFAM: protein of unknown function DUF1469; KEGG: cdi:DIP0309 hypothetical protein YP_921576.1 PFAM: Na+/H+ antiporter NhaA; sodium/hydrogen exchanger; KEGG: fra:Francci3_2583 Na+/H+ antiporter NhaA YP_921577.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA YP_921578.1 TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: sco:SCO1822 putative transmembrane transport protein YP_921579.1 PFAM: protein of unknown function DUF485; KEGG: sma:SAV6453 hypothetical protein YP_921580.1 PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr2806 nitrite extrusion protein YP_921581.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: fra:Francci3_0863 molybdopterin oxidoreductase YP_921582.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: mmc:Mmcs_3231 nitrite reductase (NAD(P)H) large subunit, NirB YP_921583.1 TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: fal:FRAAL1355 nitrite reductase, large subunit, nucleotide-binding YP_921584.1 TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: fra:Francci3_0795 nitrite reductase (NAD(P)H) large subunit, NirD YP_921585.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane YP_921586.1 PFAM: Na+/solute symporter; KEGG: sma:SAV7117 transmembrane transport protein YP_921587.1 KEGG: rha:RHA1_ro05042 hypothetical protein YP_921588.1 PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: sma:SAV7115 regulatory protein YP_921589.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase internal region; KEGG: sma:SAV7118 putative two-component system sensor kinase YP_921590.1 PFAM: carbonic anhydrase; KEGG: mag:amb0581 carbonic anhydrase YP_921591.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mpa:MAP3459 putative methyltransferase YP_921592.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; KEGG: sco:SCO3558 morphological differentiation-associated protein YP_921593.1 KEGG: sco:SCO3557 septum site determining protein YP_921594.1 PFAM: type II secretion system protein E; KEGG: sco:SCO3556 putative secretory protein YP_921595.1 PFAM: type II secretion system protein; KEGG: sco:SCO3555 integral membrane protein YP_921596.1 PFAM: type II secretion system protein; KEGG: tfu:Tfu_0126 putative integral membrane protein YP_921597.1 KEGG: sco:SCO3552 hypothetical protein YP_921598.1 KEGG: fal:FRAAL6570 hypothetical protein; putative TonB Box domain YP_921600.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sco:SCO3550 putative helicase YP_921601.1 TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: fal:FRAAL6574 anti-sigma-B factor antagonist (anti-anti-sigma-B factor) YP_921602.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient YP_921603.1 KEGG: cch:Cag_1235 hypothetical protein YP_921604.1 PFAM: methyltransferase small; Methyltransferase type 12; KEGG: sma:SAV4618 rRNA or tRNA methyltransferase YP_921607.1 PFAM: regulatory protein, LuxR; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sma:SAV6340 RNA polymerase ECF-subfamily sigma factor YP_921608.1 KEGG: sma:SAV4621 putative DNA topoisomerase I; TIGRFAM: DNA topoisomerase I; PFAM: TOPRIM domain protein; DNA topoisomerase, type IA, central domain protein; SMART: DNA topoisomerase I, ATP-binding; DNA topoisomerase I, DNA-binding; Toprim sub domain protein YP_921609.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sco:SCO6349 transcriptional regulator YP_921610.1 catalyzes the phosphorylation of ribulose to ribulose 5-phosphate YP_921611.1 catalyzes the formation of D-xylulose 5-phosphate from L-ribulose 5-phosphate YP_921612.1 catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism YP_921613.1 KEGG: ret:RHE_CH03165 xylose ABC transporter, substrate-binding protein YP_921614.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lxx:Lxx00320 multiple sugar (arabinose, xylose, galactose, glucose, fucose) putative porter YP_921615.1 PFAM: inner-membrane translocator; KEGG: sco:SCO2406 putative sugar transport permease YP_921616.1 PFAM: thymidylate kinase; KEGG: pac:PPA0243 putative thymidylate kinase YP_921617.1 TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: pac:PPA0244 DNA polymerase III delta' subunit YP_921618.1 PFAM: alpha/beta hydrolase fold; TAP domain protein; KEGG: sco:SCO3540 proteinase (secreted protein) YP_921619.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: nfa:nfa30780 putative oxidoreductase YP_921620.1 PFAM: peptidase U34, dipeptidase; KEGG: pae:PA4677 hypothetical protein YP_921621.1 PFAM: Limonene-1,2-epoxide hydrolase; KEGG: nfa:nfa48080 hypothetical protein YP_921622.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: csa:Csal_1417 transcriptional regulator, LysR family YP_921626.1 PFAM: DGPFAETKE family protein; KEGG: sma:SAV1196 hypothetical protein YP_921627.1 KEGG: rha:RHA1_ro05190 hypothetical protein YP_921628.1 PFAM: class II aldolase/adducin family protein; KEGG: cpf:CPF_1051 L-fuculose phosphate aldolase YP_921629.1 PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: cch:Cag_1641 hypothetical protein YP_921630.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: btk:BT9727_2719 conserved hypothetical protein, possible polyketide synthesis domain protein YP_921631.1 PFAM: class II aldolase/adducin family protein; short-chain dehydrogenase/reductase SDR; KEGG: syn:slr1208 short-chain alcohol dehydrogenase family YP_921632.1 PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: tte:TTE0461 Transcriptional regulator YP_921633.1 KEGG: fal:FRAAL1411 methylthioribose-1-phosphate isomerase (MTR-1-P isomerase); TIGRFAM: eIF-2B alpha/beta/delta-related uncharacterized proteins; PFAM: initiation factor 2B related YP_921634.1 KEGG: ret:RHE_PB00122 probable sugar ABC transporter, substrate-binding protein YP_921635.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: psp:PSPPH_2279 ABC transporter protein, ATP binding component YP_921636.1 PFAM: inner-membrane translocator; KEGG: mlo:mlr7287 ABC transporter, permease protein YP_921637.1 phosphorylates methylthioribose to form methylthioribose-1-phosphate; involved in methionine salvage pathway YP_921638.1 PFAM: Thrombospondin type 3 repeat; KEGG: ade:Adeh_3645 outer membrane protein, OmpA/MotB family YP_921639.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: rxy:Rxyl_0706 short-chain dehydrogenase/reductase SDR YP_921640.1 KEGG: xom:XOO_4078 hypothetical protein YP_921641.1 PFAM: Vitamin K epoxide reductase; KEGG: blo:BL0088 narrowly conserved hypothetical transmembrane protein YP_921642.1 PFAM: DSBA oxidoreductase; KEGG: nfa:nfa52230 hypothetical protein YP_921644.1 PFAM: peptidase S15; X-Pro dipeptidyl-peptidase C-terminal domain protein; KEGG: nfa:nfa43000 putative esterase YP_921645.1 PFAM: protein of unknown function DUF161; KEGG: eca:ECA3669 hypothetical protein YP_921646.1 KEGG: sma:SAV6755 hypothetical protein YP_921647.1 PFAM: ribonuclease H; KEGG: eli:ELI_01550 ribonuclease H YP_921648.1 PFAM: Endonuclease/exonuclease/phosphatase YP_921649.1 PFAM: helix-turn-helix, HxlR type; KEGG: sma:SAV4875 transcriptional regulator YP_921650.1 PFAM: NmrA family protein; KEGG: lxx:Lxx16700 hypothetical protein YP_921651.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: fra:Francci3_0236 modification methylase, HemK family YP_921652.1 KEGG: fal:FRAAL1608 hypothetical protein; putative membrane protein YP_921653.1 KEGG: tfu:Tfu_0355 putative integral membrane protein YP_921654.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: rha:RHA1_ro03045 probable NADH-dependent flavin oxidoreductase YP_921655.1 PFAM: dihydrodipicolinate reductase; KEGG: rha:RHA1_ro02530 hypothetical protein YP_921656.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: mmc:Mmcs_4362 short-chain dehydrogenase/reductase SDR YP_921657.1 PFAM: beta-lactamase domain protein; KEGG: rha:RHA1_ro04761 hypothetical protein YP_921658.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rha:RHA1_ro06613 hypothetical protein YP_921659.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: eli:ELI_09720 esterase YP_921660.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: sma:SAV1635 hypothetical protein YP_921661.1 PFAM: DNA gyrase C-terminal repeat, beta-propeller; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sco:SCO2742 putative sigma factor YP_921662.1 TIGRFAM: ABC transporter, periplasmic binding protein, thiB subfamily; PFAM: extracellular solute-binding protein, family 1; KEGG: sco:SCO5646 putative solute binding lipoprotein YP_921663.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO5647 ABC transporter integral membrane protein YP_921664.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO5648 ABC transporter ATP binding protein YP_921665.1 KEGG: pca:Pcar_1759 hypothetical protein YP_921666.1 PFAM: acyl-CoA oxidase domain protein; acyl-CoA dehydrogenase domain protein; KEGG: tfu:Tfu_2239 hypothetical protein YP_921667.1 PFAM: Inorganic pyrophosphatase; KEGG: sma:SAV4661 putative inorganic pyrophosphatase YP_921668.1 TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13, D-Ala-D-Ala carboxypeptidase C; KEGG: sma:SAV4662 D-alanyl-D-alanine carboxypeptidase YP_921669.1 KEGG: sma:SAV4663 hypothetical protein YP_921670.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: tfu:Tfu_2897 helix-turn-helix, fis-type YP_921672.1 KEGG: sco:SCO3405 putative hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_921673.1 KEGG: sma:SAV4666 putative cell division protein FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase YP_921674.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_921675.1 KEGG: sma:SAV4672 putative dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS YP_921676.1 TIGRFAM: dihydroneopterin aldolase; KEGG: tfu:Tfu_2891 dihydroneopterin aldolase family:dihydroneopterin aldolase YP_921677.1 KEGG: sco:SCO3401 putative hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK YP_921678.1 KEGG: sco:SCO3402 secreted protein YP_921679.1 KEGG: sco:SCP2.27c putative multidomain membrane protein YP_921680.1 PFAM: GCN5-related N-acetyltransferase YP_921681.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV7409 putative ABC transporter ATP-binding protein YP_921682.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV7406 putative ABC transporter permease protein YP_921683.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fal:FRAAL6728 putative ABC transporter permease protein YP_921684.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: fal:FRAAL6729 putative amino acid ABC transporter amino acid-binding protein YP_921685.1 PFAM: glycosyl transferase, family 2; KEGG: sco:SCO2590 glycosyltransferase YP_921686.1 KEGG: rxy:Rxyl_3097 hypothetical protein YP_921687.1 KEGG: rxy:Rxyl_3098 hypothetical protein YP_921688.1 KEGG: sco:SCO3384 hypothetical protein YP_921689.1 KEGG: nfa:nfa4060 putative pantothenate synthetase; TIGRFAM: pantoate--beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase YP_921690.1 KEGG: nfa:nfa4070 putative aspartate 1-decarboxylase; TIGRFAM: aspartate 1-decarboxylase; PFAM: aspartate decarboxylase YP_921691.1 catalyzes the formation of oxaloacetate from L-aspartate YP_921692.1 KEGG: fra:Francci3_4378 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase YP_921693.1 TIGRFAM: putative transcriptional activator, Baf family; PFAM: Bordetella pertussis Bvg accessory factor; KEGG: sma:SAV4690 putative Bordetella pertussis Bvg accessory factor family YP_921694.1 KEGG: pac:PPA0277 hypothetical protein YP_921695.1 PFAM: UvrB/UvrC protein; AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: sma:SAV4697 putative ATP-dependent Clp protease YP_921696.1 PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: sco:SCO3355 putative adenine glycosylase YP_921697.1 KEGG: tfu:Tfu_2874 hypothetical protein YP_921698.1 non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair YP_921699.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_921700.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sth:STH770 LacI family transcriptional repressor YP_921701.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rha:RHA1_ro06583 hypothetical protein YP_921702.1 KEGG: pac:PPA0314 hypothetical protein YP_921703.1 KEGG: sco:SCO3349 conserved hypothetical protein YP_921704.1 PFAM: Ppx/GppA phosphatase; KEGG: sco:SCO3348 putative DNA-binding protein YP_921705.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sco:SCO3347 conserved hypothetical protein YP_921706.1 PFAM: regulatory protein, TetR; KEGG: rha:RHA1_ro00946 transcriptional regulator, TetR family YP_921707.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nfa:nfa19890 putative ABC transporter ATP-binding protein YP_921708.1 PFAM: ABC-2 type transporter; KEGG: rha:RHA1_ro00945 ABC transporter, permease component YP_921709.1 PFAM: Proline dehydrogenase; KEGG: tfu:Tfu_0434 proline dehydrogenase YP_921710.1 KEGG: sma:SAV4724 putative pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein YP_921711.1 KEGG: sma:SAV4725 putative tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase, class Ib YP_921712.1 PFAM: histone deacetylase superfamily; KEGG: tfu:Tfu_2707 putative acetoin utilization protein YP_921713.1 TIGRFAM: DNA binding domain, excisionase family; PFAM: Prophage CP4-57 regulatory; KEGG: cef:CE0431 hypothetical protein YP_921714.1 PFAM: Protein of unknown function DUF1713; KEGG: pac:PPA0320 hypothetical protein YP_921715.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: fra:Francci3_0479 NAD-dependent epimerase/dehydratase YP_921716.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: fal:FRAAL0978 putative acyltransferase YP_921717.1 KEGG: sma:SAV4734 hypothetical protein YP_921718.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sma:SAV4735 RNA polymerase ECF-subfamily sigma factor YP_921719.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sma:SAV4736 3-phosphoserine phosphatase YP_921720.1 PFAM: AMP-dependent synthetase and ligase; KEGG: tth:TTC1065 long-chain-fatty-acid-CoA ligase YP_921721.1 PFAM: glutaredoxin; glutaredoxin 2; KEGG: sma:SAV4737 redoxin YP_921722.1 modulates transcription in response to the NADH/NAD(+) redox state YP_921723.1 PFAM: glutamyl-tRNA reductase; Shikimate/quinate 5-dehydrogenase; KEGG: rha:RHA1_ro02053 glutamyl-tRNA reductase YP_921724.1 KEGG: rha:RHA1_ro02052 hydroxymethylbilane synthase; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase YP_921725.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: sco:SCO3317 putative uroporphyrin-III C-methyltransferase/uroporphyrinogen-III synthase YP_921726.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_921727.1 KEGG: sma:SAV6229 secreted protein YP_921728.1 TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: sma:SAV4795 putative glutamate-1-semialdehyde 2,1-aminotransferase YP_921729.1 PFAM: Phosphoglycerate mutase; KEGG: sma:SAV4796 phosphoglycerate mutase YP_921730.1 PFAM: Redoxin domain protein; KEGG: pac:PPA0325 hypothetical protein YP_921731.1 PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: sco:SCO4473 putative cytochrome biogenesis related protein YP_921732.1 PFAM: ResB family protein; KEGG: sco:SCO4474 putative integral membrane protein YP_921733.1 PFAM: cytochrome c assembly protein; KEGG: pac:PPA0328 putative cytochrome c biogenesis protein YP_921736.1 catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate YP_921737.1 PFAM: AMP-dependent synthetase and ligase; KEGG: tfu:Tfu_1408 putative ortho-succinylbenzoate-CoA synthetase YP_921738.1 catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate YP_921739.1 KEGG: pac:PPA0903 menaquinone biosynthesis protein YP_921740.1 TIGRFAM: Na+/H+ antiporter; PFAM: sodium/hydrogen exchanger; KEGG: mmc:Mmcs_0521 Na+/H+ antiporter YP_921741.1 PFAM: cytochrome P450; KEGG: mmc:Mmcs_3241 cytochrome P450 YP_921742.1 PFAM: GCN5-related N-acetyltransferase; KEGG: nfa:nfa41970 putative enoyl-CoA hydratase/isomerase family protein YP_921743.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: sma:SAV7466 hypothetical protein YP_921744.1 PFAM: beta-lactamase domain protein; KEGG: sma:SAV1967 hypothetical protein YP_921745.1 TIGRFAM: isochorismate synthases; PFAM: Anthranilate synthase component I and chorismate binding protein; KEGG: tfu:Tfu_1413 isochorismate synthase YP_921747.1 PFAM: Peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein; KEGG: sma:SAV3383 lipoprotein YP_921748.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone YP_921749.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; KEGG: sma:SAV4837 putative NADH dehydrogenase chain A YP_921750.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen YP_921751.1 Catalyzes the transfer of electrons from NADH to quinone YP_921752.1 Catalyzes the transfer of electrons from NADH to quinone YP_921753.1 Catalyzes the transfer of electrons from NADH to quinone YP_921754.1 KEGG: rha:RHA1_ro05914 probable NADH dehydrogenase subunit F; TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit YP_921755.1 Catalyzes the transfer of electrons from NADH to quinone YP_921756.1 Catalyzes the transfer of electrons from NADH to quinone YP_921757.1 Catalyzes the transfer of electrons from NADH to quinone YP_921758.1 Catalyzes the transfer of electrons from NADH to quinone YP_921759.1 Catalyzes the transfer of electrons from NADH to quinone YP_921760.1 Catalyzes the transfer of electrons from NADH to ubiquinone YP_921761.1 KEGG: rha:RHA1_ro05921 probable NADH dehydrogenase subunit M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I) YP_921762.1 Catalyzes the transfer of electrons from NADH to quinone YP_921763.1 PFAM: Polyprenyl synthetase; KEGG: sco:SCO4583 putative polyprenyl diphosphate synthase YP_921764.1 TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6, transmembrane; KEGG: sma:SAV4873 RarD protein YP_921765.1 catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin YP_921766.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: tfu:Tfu_2674 2-oxoglutarate ferredoxin oxidoreductase, alpha subunit YP_921767.1 TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: mmc:Mmcs_3482 thiosulphate-binding protein YP_921768.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mbo:Mb2421c probable sulfate-transport integral membrane protein ABC transporter CysT YP_921769.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mtc:MT2469 sulfate ABC transporter, permease protein YP_921770.1 KEGG: mpa:MAP2210c sulfate transport system ATP-binding protein; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase YP_921771.1 PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: ccr:CC1928 inosine-uridine preferring nucleoside hydrolase YP_921772.1 PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: rxy:Rxyl_1898 transcriptional regulator, GntR family YP_921773.1 KEGG: syn:sll1776 deoxyribose-phosphate aldolase; TIGRFAM: deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase YP_921774.1 PFAM: PfkB domain protein; KEGG: rxy:Rxyl_1888 PfkB YP_921779.1 TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: nfa:nfa15380 putative phage tail YP_921782.1 TIGRFAM: DNA binding domain, excisionase family YP_921784.1 KEGG: lxx:Lxx24020 phage-related terminase YP_921785.1 KEGG: lxx:Lxx24010 hypothetical protein YP_921790.1 TIGRFAM: DNA binding domain, excisionase family; KEGG: mmc:Mmcs_4829 hypothetical protein YP_921792.1 PFAM: phage integrase family protein; KEGG: mmc:Mmcs_4828 phage integrase YP_921793.1 putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription YP_921794.1 PFAM: phage integrase family protein; KEGG: sco:SCO5349 integrase YP_921795.1 KEGG: sco:SCO5348 excisionase YP_921799.1 PFAM: single-strand binding protein/Primosomal replication protein n YP_921800.1 PFAM: transposase IS3/IS911 family protein; KEGG: cef:CE2618 putative transposase YP_921801.1 PFAM: Integrase, catalytic region; KEGG: mmc:Mmcs_5505 integrase, catalytic region YP_921802.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z YP_921803.1 PFAM: oxidoreductase domain protein; NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: mxa:MXAN_2154 NADP oxidoreductase, coenzyme F420-dependent YP_921804.1 PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; protein of unknown function DUF1486; KEGG: nfa:nfa29880 hypothetical protein YP_921805.1 PFAM: protein of unknown function DUF336; KEGG: mlo:msr9402 hypothetical protein YP_921806.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; KEGG: sme:SMa0257 probable methylamine YP_921807.1 PFAM: Integrase, catalytic region; KEGG: rha:RHA1_ro06977 possible transposase YP_921808.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: rha:RHA1_ro06982 possible insertion sequence ATP-binding protein YP_921809.1 KEGG: mxa:MXAN_4930 amine oxidase, flavin-containing YP_921810.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: aor:AO090020000701 monoamine oxidase Pfam: FAD_binding_3 HI0933_like FAD_binding_2 GIDA DAO Amino_oxidase YP_921812.1 KEGG: fal:FRAAL2528 hypothetical protein YP_921813.1 KEGG: rha:RHA1_ro03774 hypothetical protein YP_921814.1 PFAM: Stress responsive alpha-beta barrel domain protein; KEGG: mmp:MMP0887 hypothetical protein YP_921815.1 PFAM: cyclase family protein; KEGG: pfl:PFL_4035 hypothetical polyketide cyclase YP_921816.1 PFAM: monooxygenase, FAD-binding; KEGG: bur:Bcep18194_A4962 hypothetical protein YP_921817.1 PFAM: carbon monoxide dehydrogenase subunit G; KEGG: mmc:Mmcs_4601 carbon monoxide dehydrogenase subunit G YP_921818.1 PFAM: molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: rpb:RPB_3113 molybdopterin dehydrogenase, FAD-binding YP_921819.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rxy:Rxyl_1873 (2Fe-2S)-binding protein YP_921820.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: rxy:Rxyl_1872 carbon-monoxide dehydrogenase YP_921821.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: sma:SAV4383 hydrolase YP_921822.1 PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: eba:p2A227 putative integrase YP_921823.1 PFAM: phage integrase family protein; KEGG: sus:Acid_3311 phage integrase family protein YP_921824.1 PFAM: phage integrase family protein; KEGG: eba:p2A229 putative integrase YP_921825.1 KEGG: mmc:Mmcs_3178 integrase, catalytic region YP_921826.1 KEGG: fal:FRAAL2528 hypothetical protein YP_921827.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: gka:GKP18 carbon monoxide dehydrogenase small chain YP_921828.1 PFAM: molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: rpb:RPB_3113 molybdopterin dehydrogenase, FAD-binding YP_921829.1 KEGG: rha:RHA1_ro03774 hypothetical protein YP_921831.1 PFAM: inner-membrane translocator; KEGG: fal:FRAAL2526 putative ribose transport system permease protein; putative membrane protein YP_921832.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fal:FRAAL2527 putative ATP-binding protein of sugar ABC transporter YP_921833.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: rxy:Rxyl_1874 carbon-monoxide dehydrogenase YP_921834.1 PFAM: protein of unknown function DUF1100, hydrolase family protein; KEGG: ppu:PP_3195 hypothetical protein YP_921835.1 PFAM: protein of unknown function DUF861, cupin_3; Cupin 2, conserved barrel domain protein; KEGG: sma:SAV6269 hypothetical protein YP_921837.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sme:SMa0257 probable methylamine YP_921838.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: nfa:nfa30730 hypothetical protein YP_921839.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sma:SAV4790 LysR-family transcriptional regulator YP_921840.1 PFAM: protein of unknown function DUF861, cupin_3; KEGG: mlo:mll2946 hypothetical protein YP_921841.1 PFAM: FAD dependent oxidoreductase; KEGG: fal:FRAAL6023 hypothetical protein; putative signal peptide YP_921842.1 PFAM: small multidrug resistance protein; KEGG: nfa:nfa19760 putative multi-drug efflux transporter YP_921843.1 PFAM: transposase, mutator type; KEGG: mbo:Mb3664c putative transposase YP_921844.1 KEGG: mbo:Mb3664c putative transposase YP_921845.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rha:RHA1_ro04979 probable ATPase, MoxR family YP_921846.1 PFAM: protein of unknown function DUF182; KEGG: mmc:Mmcs_0488 protein of unknown function DUF182 YP_921847.1 PFAM: FAD dependent oxidoreductase; KEGG: bam:Bamb_3196 FAD dependent oxidoreductase YP_921848.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: nfa:nfa50890 putative ferredoxin reductase YP_921849.1 PFAM: NADPH-dependent FMN reductase; flavodoxin/nitric oxide synthase; KEGG: mpa:MAP3035 putative Trp repressor binding protein YP_921850.1 PFAM: purine catabolism PurC domain protein; KEGG: mmc:Mmcs_3284 purine catabolism PurC-like protein YP_921851.1 KEGG: fra:Francci3_4407 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS YP_921852.1 PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: sco:SCO1081 putative electron transfer flavoprotein, alpha subunit YP_921853.1 PFAM: electron transfer flavoprotein beta-subunit; KEGG: sco:SCO1082 putative electron transfer flavoprotein, beta subunit YP_921854.1 PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: tfu:Tfu_2571 methenyltetrahydrofolate cyclohydrolase YP_921855.1 PFAM: FAD dependent oxidoreductase; glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein, C-terminal barrel; KEGG: jan:Jann_2849 FAD dependent oxidoreductase YP_921856.1 TIGRFAM: formyltetrahydrofolate deformylase; PFAM: formyl transferase domain protein; amino acid-binding ACT domain protein; KEGG: bbr:BB4045 putative formyltetrahydrofolate deformylase YP_921857.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: mmc:Mmcs_3012 transcriptional regulator, LysR family YP_921858.1 TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; KEGG: mmc:Mmcs_2274 4-aminobutyrate aminotransferase YP_921859.1 PFAM: aldehyde dehydrogenase; KEGG: mlo:mll5719 succinate-semialdehyde dehydrogenase YP_921860.1 PFAM: FAD dependent oxidoreductase; KEGG: rxy:Rxyl_1818 D-amino-acid dehydrogenase YP_921861.1 KEGG: sco:SCO6164 putative DnaK suppressor protein YP_921862.1 KEGG: pol:Bpro_0100 transcriptional regulators, TraR/DksA family YP_921864.1 PFAM: metallophosphoesterase; KEGG: nfa:nfa48690 putative phosphoesterase YP_921866.1 PFAM: monooxygenase, FAD-binding; KEGG: rha:RHA1_ro03540 pentachlorophenol monooxygenase YP_921867.1 KEGG: sma:SAV1313 hypothetical protein YP_921868.1 KEGG: rha:RHA1_ro02309 probable fumarylacetoacetase; TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase YP_921869.1 KEGG: rha:RHA1_ro02310 hypothetical protein YP_921870.1 PFAM: homogentisate 1,2-dioxygenase; Cupin 2, conserved barrel domain protein; KEGG: rha:RHA1_ro02311 homogentisate 1,2-dioxygenase YP_921871.1 PFAM: aldo/keto reductase; KEGG: tma:TM1297 oxidoreductase, putative YP_921872.1 PFAM: glycosyl transferase, group 1; KEGG: pac:PPA1824 glycosyl transferase YP_921873.1 KEGG: lxx:Lxx05505 hypothetical protein YP_921874.1 KEGG: mmc:Mmcs_4148 hypothetical protein YP_921875.1 TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: rha:RHA1_ro03039 formate dehydrogenase YP_921876.1 PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: sco:SCO0468 hypothetical protein YP_921877.1 PFAM: methyladenine glycosylase; KEGG: cef:CE2657 putative 3-methyladenine-DNA glycosylase YP_921878.1 PFAM: ROK family protein; KEGG: rha:RHA1_ro02370 possible xylose repressor YP_921879.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_921880.1 KEGG: nfa:nfa53170 hypothetical protein YP_921881.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif YP_921883.1 KEGG: sco:SCO4636 hypothetical protein YP_921884.1 PFAM: MaoC domain protein dehydratase; KEGG: sco:SCO4637 hypothetical protein YP_921885.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_921886.1 KEGG: nfa:nfa53880 hypothetical protein YP_921887.1 catalyzes the formation of inosine from adenosine YP_921888.1 PFAM: aminotransferase, class I and II; KEGG: nfa:nfa2740 hypothetical protein YP_921889.1 KEGG: rha:RHA1_ro05298 hypothetical protein YP_921890.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: rde:RD1_2007 hydroxydechloroatrazine ethylaminohydrolase, putative YP_921891.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bpm:BURPS1710b_A1655 ribose ABC transporter, ATP-binding protein YP_921892.1 KEGG: hso:HS_0765 ABC-type sugar-binding periplasmic protein YP_921893.1 PFAM: inner-membrane translocator; KEGG: rha:RHA1_ro09081 ABC sugar transporter, permease component YP_921894.1 PFAM: regulatory proteins, IclR; KEGG: mpa:MAP2738c hypothetical protein YP_921895.1 PFAM: ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain protein; KEGG: mmc:Mmcs_5458 ring hydroxylating dioxygenase, alpha subunit YP_921896.1 PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit; KEGG: mmc:Mmcs_1690 aromatic-ring-hydroxylating dioxygenase, beta subunit YP_921898.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sma:SAV1609 ferredoxin reductase YP_921899.1 PFAM: regulatory proteins, IclR; KEGG: sco:SCO6669 transcriptional regulator YP_921900.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sco:SCO6304 oxidoreductase YP_921901.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dar:Daro_3244 short-chain dehydrogenase/reductase SDR YP_921902.1 KEGG: jan:Jann_1453 dihydrodipicolinate synthetase YP_921903.1 PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: reu:Reut_B3761 ornithine cyclodeaminase/mu-crystallin YP_921904.1 PFAM: aldehyde dehydrogenase; KEGG: sme:SMa0260 GabD3 succinate-semialdehyde dehdyrogenase YP_921905.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sco:SCO6309 LysR-family transcriptional regulator YP_921906.1 TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: sco:SCO4646 preprotein translocase SecE subunit YP_921907.1 KEGG: sco:SCO4647 transcription antitermination protein; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG; SMART: NGN domain protein YP_921908.1 PFAM: ribosomal protein L11; KEGG: pac:PPA1890 50S ribosomal protein L11 YP_921909.1 PFAM: ribosomal protein L1; KEGG: sco:SCO4649 50S ribosomal protein L1 YP_921910.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_921911.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_921912.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rha:RHA1_ro02744 ABC superfamily, ATP-binding component YP_921913.1 PFAM: protein of unknown function DUF140; KEGG: sma:SAV5901 putative ABC-transporter integral membrane protein YP_921914.1 PFAM: protein of unknown function DUF140; KEGG: sma:SAV5900 hypothetical protein YP_921915.1 TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5899 mce-related protein YP_921916.1 TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5898 putative secreted protein YP_921917.1 TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5897 putative secreted protein YP_921918.1 TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5896 mce-related protein YP_921919.1 TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5895 putative secreted protein YP_921920.1 TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5894 putative secreted protein YP_921921.1 KEGG: mmc:Mmcs_0159 putative conserved transmembrane protein YP_921922.1 PFAM: heat shock protein DnaJ domain protein; KEGG: rha:RHA1_ro02745 hypothetical protein YP_921923.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_921924.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_921925.1 KEGG: rha:RHA1_ro01772 hypothetical protein YP_921926.1 TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase; KEGG: rha:RHA1_ro01992 possible dehydrogenase YP_921927.1 PFAM: NUDIX hydrolase; KEGG: pac:PPA0550 hypothetical protein YP_921929.1 KEGG: gvi:glr0014 phosphate ABC transporter periplasmic phosphate-binding protein YP_921930.1 KEGG: hne:HNE_2670 putative lipoprotein YP_921931.1 KEGG: sma:SAV4404 hypothetical protein YP_921932.1 KEGG: mmc:Mmcs_0533 hypothetical protein YP_921933.1 PFAM: glycosyl transferase, family 2; General secretory system II, protein E domain protein; KEGG: ttj:TTHA0743 glycosyltransferase related protein YP_921935.1 PFAM: glycoside hydrolase, family 5; KEGG: sma:SAV1854 endo-1,4-beta-glucanase YP_921936.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: rxy:Rxyl_2381 iron-containing alcohol dehydrogenase YP_921937.1 PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; FAD linked oxidase domain protein; KEGG: rha:RHA1_ro00345 possible oxidoreductase, N-termminal YP_921938.1 KEGG: pen:PSEEN4336 hypothetical protein YP_921939.1 KEGG: tfu:Tfu_0244 hypothetical protein YP_921940.1 KEGG: mmc:Mmcs_1279 hypothetical protein YP_921941.1 PFAM: Appr-1-p processing domain protein; KEGG: nfa:nfa36990 hypothetical protein YP_921942.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate YP_921943.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sma:SAV3627 acetyltransferase YP_921945.1 forms citrate from oxaloacetate and acetyl-CoA; functions in TCA cycle YP_921946.1 KEGG: sma:SAV3858 putative pyridoxamine 5'-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding YP_921947.1 PFAM: regulatory protein, TetR; KEGG: mmc:Mmcs_2550 transcriptional regulator, TetR family YP_921948.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: fal:FRAAL0788 putative ABC phosphate-transporting ATPase YP_921949.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: rha:RHA1_ro04170 bifunctional ABC lipid A exporter YP_921951.1 TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: dsy:DSY2974 hypothetical protein YP_921952.1 PFAM: type III secretion exporter; KEGG: plu:plu1895 flagellar biosynthetic protein FlhB YP_921953.1 TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: tbd:Tbd_1612 flagellar biosynthesis protein FliR YP_921954.1 PFAM: export protein FliQ, family 3; KEGG: mta:Moth_0787 flagellar biosynthetic protein FliQ YP_921955.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus YP_921957.1 TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: tma:TM0680a chemotaxis protein YP_921958.1 PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: tde:TDE2763 flagellar motor switch protein FliM YP_921959.1 PFAM: flagellar basal body-associated protein FliL; KEGG: tbd:Tbd_1606 probable flagellar transmembrane protein FliL YP_921960.1 PFAM: OmpA/MotB domain protein; KEGG: chy:CHY_0964 flagellar motor protein MotB YP_921961.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dsy:DSY3032 hypothetical protein YP_921962.1 PFAM: flagellar FlbD family protein; KEGG: lxx:Lxx06430 motility protein YP_921963.1 PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: bha:BH2449 flagellar hook protein YP_921964.1 PFAM: flagellar hook capping protein; KEGG: bja:bll6853 hook formation protein YP_921965.1 PFAM: flagellar hook-length control protein; KEGG: lma:LmjF35.0290 hypothetical protein, conserved YP_921966.1 PFAM: NLP/P60 protein; Lytic transglycosylase, catalytic; KEGG: chy:CHY_0404 transglycosylase YP_921968.1 KEGG: lxx:Lxx06360 flagellum-like ATP synthase; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; SMART: AAA ATPase YP_921969.1 KEGG: lxx:Lxx06350 hypothetical protein YP_921970.1 PFAM: flagellar motor switch protein FliG; KEGG: gka:GK1220 flagellar motor switch protein YP_921971.1 TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring C-terminal domain protein; KEGG: lxx:Lxx06320 flagellar M-ring protein YP_921972.1 TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: lxx:Lxx06330 flagellar basal-body protein YP_921973.1 KEGG: lxx:Lxx06310 flagellar basal-body rod protein YP_921974.1 TIGRFAM: flagellar basal-body rod protein FlgB; KEGG: sth:STH3006 flagella basal body rod protein YP_921976.1 PFAM: flagellar protein FliS; KEGG: lxx:Lxx06280 flagellar-like protein YP_921977.1 PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: gme:Gmet_0444 flagellar hook-associated protein 2-like YP_921978.1 PFAM: flagellin domain protein; KEGG: mta:Moth_0760 flagellin-like YP_921979.1 TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: xac:XAC1933 RNA polymerase sigma factor for flagellar operon FliA YP_921981.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: mta:Moth_0746 flagellar hook-associated protein YP_921982.1 TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: mta:Moth_0747 flagellin-like YP_921983.1 PFAM: protein of unknown function DUF180; KEGG: sth:STH122 hypothetical protein YP_921984.1 PFAM: carbon storage regulator; KEGG: bld:BLi03781 carbon storage regulator; RBL05035 YP_921985.1 PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO0623 membrane transport protein YP_921986.1 PFAM: regulatory protein, MarR; KEGG: sco:SCO5287 MarR-family transcriptional regulator YP_921987.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: tfu:Tfu_0833 alpha amylase, catalytic subdomain YP_921988.1 KEGG: tfu:Tfu_1381 hypothetical protein YP_921989.1 KEGG: rru:Rru_A1285 WD-40 repeat YP_921990.1 PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein; KEGG: fal:FRAAL0101 deoxyribodipyrimidine photolyase (DNA photolyase) (photoreactivating enzyme) YP_921991.1 PFAM: iron dependent repressor; KEGG: sma:SAV3855 putative iron dependent regulatory protein YP_921993.1 PFAM: Silent information regulator protein Sir2; KEGG: nfa:nfa43380 putative Sir2 family regulator YP_921994.1 KEGG: sme:SMa0044 hypothetical protein YP_921995.1 PFAM: Saccharopine dehydrogenase; KEGG: sma:SAV1683 hypothetical protein YP_921996.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: sma:SAV2240 transcriptional regulator YP_921997.1 PFAM: large-conductance mechanosensitive channel; KEGG: pac:PPA0491 large conductance mechanosensitive channel YP_921998.1 PFAM: SAF domain; KEGG: rha:RHA1_ro05629 hypothetical protein YP_921999.1 TIGRFAM: putative regulatory protein, FmdB family; KEGG: mmc:Mmcs_4292 putative regulatory protein, FmdB YP_922000.1 PFAM: peptidase S45, penicillin amidase; KEGG: sco:SCO3184 putative penicillin acylase YP_922001.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: sco:SCO3183 hypothetical protein YP_922002.1 PFAM: UTP--glucose-1-phosphate uridylyltransferase; KEGG: pac:PPA0489 UTP--glucose-1-phosphate uridylyltransferase YP_922003.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: sma:SAV3672 putative molybdopterin biosynthesis protein YP_922004.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis YP_922005.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; KEGG: sco:SCO3179 molybdenum cofactor biosynthesis protein (putative secreted protein) YP_922006.1 PFAM: GCN5-related N-acetyltransferase; KEGG: tfu:Tfu_0377 ribosomal-protein-alanine N-acetyltransferase YP_922007.1 KEGG: sco:SCO3177 hypothetical protein YP_922008.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro02334 possible 3-oxoacyl-[acyl-carrier-protein] reductase YP_922009.1 PFAM: nitroreductase; KEGG: fal:FRAAL2433 putative NADH dehydrogenase (H(2)O(2) forming NADH oxidase) (NADH:oxygen oxidoreductase) YP_922010.1 KEGG: sus:Acid_6472 methylmalonyl-CoA mutase, large subunit; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase YP_922011.1 PFAM: cobalamin B12-binding domain protein; KEGG: pfu:PF1946 methylmalonyl-CoAmutase, subunit alpha YP_922012.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rha:RHA1_ro03966 acyl-CoA synthetase YP_922013.1 TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; KEGG: sma:SAV2855 lysine arginine ornithine transport system kinase YP_922014.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: fal:FRAAL4766 putative enoyl-CoA hydratase/isomerase YP_922015.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: sma:SAV3834 acyl-CoA dehydrogenase YP_922016.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: mmc:Mmcs_5189 acyl-CoA dehydrogenase-like protein YP_922017.1 PFAM: nitroreductase; KEGG: fal:FRAAL2433 putative NADH dehydrogenase (H(2)O(2) forming NADH oxidase) (NADH:oxygen oxidoreductase) YP_922018.1 KEGG: ret:RHE_PC00149 putative sugar ABC transporter, substrate-binding protein YP_922019.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: atc:AGR_L_2027 ABC transporter protein, ATP binding component YP_922020.1 PFAM: inner-membrane translocator; KEGG: rha:RHA1_ro08440 probable monosaccharide-transporting ATPase YP_922021.1 PFAM: regulatory protein, TetR; KEGG: mlo:mll7734 transcriptional regulator YP_922022.1 PFAM: luciferase family protein; KEGG: rxy:Rxyl_0369 luciferase-like protein YP_922023.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bbr:BB0763 enoyl-CoA hydratase YP_922024.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bxe:Bxe_C0282 alpha-methylacyl-CoA racemase YP_922025.1 PFAM: luciferase family protein; KEGG: sma:SAV6641 FMN-dependent monooxygenase YP_922026.1 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase; catalyzes radical-mediated transfer of hydroxybenzyl group from 4-hydroxyphenylpyruvate (HPP) to 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione to form 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO); functions in F420 biosynthesis YP_922027.1 KEGG: mbo:Mb3007 conserved hypothetical alanine rich protein YP_922028.1 TIGRFAM: NADPH-dependent F420 reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; KEGG: tfu:Tfu_0970 NADPH-dependent F420 reductase YP_922029.1 PFAM: regulatory protein, TetR; KEGG: nfa:nfa34140 putative transcriptional regulator YP_922030.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rha:RHA1_ro02345 long-chain-acyl-CoA dehydrogenase YP_922031.1 KEGG: sma:SAV403 putative pyridine nucleotide transhydrogenase, beta subunit YP_922032.1 KEGG: fal:FRAAL3976 putative acyl-CoA dehydrogenase YP_922034.1 PFAM: protein of unknown function DUF1271; KEGG: mac:MA1680 hypothetical protein YP_922035.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: sma:SAV1546 hypothetical protein YP_922036.1 PFAM: ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain protein; KEGG: rha:RHA1_ro02842 large subunit of ring-hydroxylating dioxygenase YP_922037.1 PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit; KEGG: fal:FRAAL3401 putative dioxygenase component, beta subunit YP_922039.1 PFAM: glutamine amidotransferase class-I; KEGG: sai:Saci_1154 hypothetical protein YP_922040.1 PFAM: glutamine synthetase, catalytic region; KEGG: bja:bll1069 probable glutamine synthetase YP_922041.1 PFAM: ferredoxin; KEGG: bmb:BruAb1_1031 ferredoxin, 2Fe-2S YP_922042.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rfr:Rfer_0300 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_922043.1 PFAM: alpha/beta hydrolase fold; KEGG: mmc:Mmcs_1701 4-carboxymuconolactone decarboxylase YP_922044.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: mmc:Mmcs_1374 transcriptional regulator, LysR family YP_922045.1 PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: nfa:nfa35210 putative muconate cycloisomerase YP_922046.1 TIGRFAM: catechol 1,2-dioxygenase; PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase, N-terminal domain protein; KEGG: mmc:Mmcs_1376 catechol 1,2-dioxygenase YP_922047.1 PFAM: Muconolactone delta-isomerase; KEGG: nfa:nfa35230 putative muconolactone delta-isomerase YP_922048.1 KEGG: nha:Nham_3300 hypothetical protein YP_922049.1 PFAM: ferric-uptake regulator; KEGG: nfa:nfa3250 putative ferric uptake regulator YP_922050.1 PFAM: regulatory protein, MarR; KEGG: rha:RHA1_ro08295 transcriptional regulator, MarR family YP_922051.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: bha:BH3167 transcriptional regulator (GntR family) YP_922053.1 PFAM: protein of unknown function DUF35; KEGG: bja:bll2959 hypothetical protein YP_922054.1 KEGG: pol:Bpro_5255 thiolase YP_922055.1 PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: mes:Meso_4533 mandelate racemase/muconate lactonizing enzyme-like YP_922056.1 PFAM: aldehyde dehydrogenase; KEGG: bxe:Bxe_A3599 betaine-aldehyde dehydrogenase YP_922057.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: hma:rrnAC3415 hypothetical protein YP_922058.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rha:RHA1_ro00742 hypothetical protein YP_922059.1 PFAM: luciferase family protein; KEGG: rha:RHA1_ro05823 hypothetical protein YP_922060.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: sco:SCO7702 GntR-family transcriptional regulator YP_922061.1 PFAM: Extracellular ligand-binding receptor; KEGG: rxy:Rxyl_0193 extracellular ligand-binding receptor YP_922062.1 PFAM: inner-membrane translocator; KEGG: mag:amb2873 branched-chain amino acid ABC-type transport system YP_922063.1 PFAM: inner-membrane translocator; KEGG: rxy:Rxyl_0195 inner-membrane translocator YP_922064.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bpa:BPP2198 putative ABC transport system, ATP-bidning protein YP_922065.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bbr:BB2905 high-affinity branched-chain amino acid transport, ATP-binding protein YP_922066.1 KEGG: afu:AF1066 N5,N10-methylenetetrahydromethanopterin reductase YP_922067.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpb:RPB_0555 enoyl-CoA hydratase/isomerase YP_922068.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: reu:Reut_A1835 acyl-CoA dehydrogenase, C-terminal:acyl-CoA dehydrogenase, central region:acyl-CoA dehydrogenase, N-terminal YP_922069.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rxy:Rxyl_0244 L-carnitine dehydratase/bile acid-inducible protein F YP_922070.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rxy:Rxyl_1704 AMP-dependent synthetase and ligase YP_922071.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: gka:GK2036 3-hydroxybutyryl-CoA dehydrogenase YP_922072.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rha:RHA1_ro01928 probable enoyl-CoA hydratase YP_922073.1 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase; catalyzes radical-mediated transfer of hydroxybenzyl group from 4-hydroxyphenylpyruvate (HPP) to 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione to form 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO); functions in F420 biosynthesis YP_922074.1 TIGRFAM: NADPH-dependent F420 reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE, N-terminal domain protein; KEGG: tfu:Tfu_0970 NADPH-dependent F420 reductase YP_922075.1 KEGG: sco:SCO5557a hypothetical protein YP_922076.1 PFAM: GTP cyclohydrolase II; KEGG: sma:SAV545 putative GTP cyclohydrolase II YP_922077.1 KEGG: lma:LmjF35.0540 proteophosphoglycan 5 YP_922078.1 PFAM: ROK family protein; KEGG: ret:RHE_CH01552 probable transcriptional regulator protein, ROK family YP_922079.1 PFAM: extracellular solute-binding protein, family 1; KEGG: sme:SMb21221 putative sugar uptake ABC transporter periplasmic solute-binding protein precursor YP_922080.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mxa:MXAN_7294 putative sugar ABC transporter, permease protein YP_922081.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMb21219 putative sugar uptake ABC transporter permease protein YP_922082.1 PFAM: sugar isomerase (SIS); KEGG: mes:Meso_3554 sugar isomerase (SIS) YP_922083.1 PFAM: PfkB domain protein; KEGG: mlo:mlr3644 carbohydrate kinase YP_922084.1 PFAM: ferric-uptake regulator; KEGG: rha:RHA1_ro05274 Fe(3+) uptake regulator YP_922085.1 KEGG: rha:RHA1_ro05275 catalase; TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase YP_922086.1 KEGG: dra:DR1380 hypothetical protein YP_922087.1 KEGG: fal:FRAAL6695 hypothetical protein YP_922088.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: fal:FRAAL1971 conserved hypothetical protein; putative FMN-binding split barrel domain YP_922089.1 PFAM: Clp N terminal domain protein YP_922090.1 PFAM: aldo/keto reductase; KEGG: tfu:Tfu_2293 oxidoreductase YP_922092.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV1878 ABC transporter ATP-binding protein YP_922094.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: rha:RHA1_ro05624 possible serine protease, C-terminal YP_922095.1 PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV7030 transmembrane efflux protein YP_922096.1 TIGRFAM: conserved repeat domain; PFAM: protein of unknown function DUF11; KEGG: rpd:RPD_3003 outer membrane autotransporter barrel YP_922097.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: eli:ELI_10920 hydrolase, haloacid dehalogenase-like family protein YP_922098.1 KEGG: rxy:Rxyl_1676 citrate synthase I; TIGRFAM: citrate synthase I; PFAM: Citrate synthase YP_922099.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_922100.1 forms a direct contact with the tRNA during translation YP_922101.1 TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: sma:SAV4959 putative phosphoglucomutase/phosphomannomutase YP_922102.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO1742 putative ABC-transporter ATP-binding protein YP_922103.1 KEGG: rha:RHA1_ro06014 hypothetical protein YP_922105.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis YP_922106.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_922107.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids YP_922108.1 KEGG: fra:Francci3_0932 hypothetical protein YP_922109.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family N-terminal domain protein; KEGG: sco:SCO4742 hypothetical protein YP_922110.1 KEGG: sco:SCO4745 putative alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein YP_922111.1 PFAM: alpha/beta hydrolase fold; KEGG: sma:SAV4968 hydrolase YP_922112.1 PFAM: protein of unknown function UPF0079; KEGG: sma:SAV4969 hypothetical protein YP_922113.1 KEGG: rxy:Rxyl_3097 hypothetical protein YP_922114.1 PFAM: glycosyl transferase, group 1; KEGG: sco:SCO2592 transferase YP_922116.1 KEGG: sma:SAV2206 hypothetical protein YP_922117.1 catalyzes the ATP-dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; in mycobacteria LigC has weak intrinsic nick joining activities and is not essential for growth YP_922118.1 KEGG: cef:CE1016 glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase; TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase YP_922119.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_922120.1 TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: sco:SCO2018 putative aminopeptidase YP_922121.1 TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal protein L25; KEGG: rha:RHA1_ro05695 50S ribosomal protein L25 YP_922122.1 PFAM: peptidyl-tRNA hydrolase; KEGG: sco:SCO3125 peptidyl-tRNA hydrolase YP_922123.1 PFAM: inositol monophosphatase; KEGG: mmc:Mmcs_3917 inositol monophosphatase YP_922124.1 KEGG: sma:SAV3169 hypothetical protein YP_922125.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fra:Francci3_4264 phosphate ABC transporter, permease protein PstC YP_922126.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fal:FRAAL6533 phosphate ABC transporter permease protein YP_922127.1 TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; KEGG: fal:FRAAL6535 high-affinity phosphate transport protein (ABC superfamily) YP_922129.1 PFAM: peptidase C60, sortase A and B; KEGG: fal:FRAAL2033 putative sortase (surface protein transpeptidase) YP_922130.1 KEGG: cya:CYA_1212 phosphate uptake transporter (PhoT) ABC transporter family, substrate-binding protein YP_922131.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cef:CE2464 putative phosphate transport system ATP-binding protein YP_922132.1 KEGG: tfu:Tfu_2594 similar to membrane-bound lytic murein transglycosylase B YP_922133.1 PFAM: Collagen triple helix repeat; KEGG: hso:HS_1632 conserved hypothetical protein YP_922134.1 KEGG: sco:SCO3109 putative transcriptional-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like YP_922136.1 PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: sma:SAV3537 putative MazG-family transcriptional regulator YP_922137.1 KEGG: mpa:MAP3892 hypothetical protein YP_922138.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_922139.1 PFAM: Septum formation initiator; KEGG: pac:PPA0546 conserved protein, putative septum formation initiator YP_922140.1 PFAM: protein of unknown function DUF501; KEGG: sma:SAV3531 hypothetical protein YP_922141.1 PFAM: Ppx/GppA phosphatase; KEGG: sco:SCO3093 hydrolase YP_922142.1 PFAM: protein of unknown function DUF1469; KEGG: sco:SCO1911 integral membrane protein YP_922143.1 KEGG: mmc:Mmcs_2235 hypothetical protein YP_922144.1 KEGG: sma:SAV5684 hypothetical protein YP_922145.1 PFAM: Uracil-DNA glycosylase superfamily; KEGG: fal:FRAAL6229 uracil-DNA glycosylase YP_922146.1 PFAM: Methyltransferase type 11; KEGG: bte:BTH_I1959 hypothetical protein YP_922147.1 PFAM: protein of unknown function DUF1112; KEGG: pac:PPA0549 membrane spanning protein YP_922148.1 PFAM: lipolytic enzyme, G-D-S-L family; KEGG: sma:SAV3511 secreted protein YP_922149.1 KEGG: rha:RHA1_ro05843 probable cystathionine beta-synthase; TIGRFAM: cystathionine beta-synthase; PFAM: CBS domain containing protein; Pyridoxal-5'-phosphate-dependent enzyme, beta subunit YP_922150.1 PFAM: protein of unknown function DUF35; KEGG: mbo:Mb1654c hypothetical protein YP_922151.1 KEGG: mpa:MAP1320c lipid-transfer protein YP_922152.1 PFAM: cytochrome bd ubiquinol oxidase, subunit I; KEGG: lxx:Lxx12300 cytochrome D ubiquinol oxidase subunit I YP_922153.1 TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; KEGG: sco:SCO3946 putative cytochrome oxidase subunit II YP_922154.1 KEGG: sco:SCO3947 putative ABC transporter; TIGRFAM: ABC transporter, transmembrane region, type 1; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase YP_922155.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: fra:Francci3_3253 two component transcriptional regulator, LuxR family YP_922156.1 PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: sco:SCO0203 two-component sensor YP_922157.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: sco:SCO0174 putative DNA-binding protein YP_922158.1 PFAM: UspA domain protein; KEGG: rha:RHA1_ro04893 universal stress protein YP_922159.1 PFAM: CBS domain containing protein; KEGG: pai:PAE3319 conserved protein with 2 CBS domains YP_922160.1 KEGG: mmc:Mmcs_2103 sec-C motif containing protein YP_922161.1 PFAM: UspA domain protein; KEGG: cjk:jk0100 putative universal stress protein YP_922162.1 KEGG: rha:RHA1_ro05589 probable magnesium chelatase subunit ChlI YP_922163.1 PFAM: von Willebrand factor, type A; KEGG: rha:RHA1_ro05590 hypothetical protein YP_922164.1 PFAM: glycoside hydrolase, family 31; KEGG: tfu:Tfu_1613 putative alpha-glucosidase YP_922167.1 KEGG: rxy:Rxyl_3164 periplasmic binding protein YP_922169.1 PFAM: protein of unknown function DUF81; KEGG: sco:SCO2485 hypothetical protein YP_922170.1 PFAM: protein of unknown function UPF0029; KEGG: rha:RHA1_ro05575 hypothetical protein YP_922171.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: mpa:MAP3938c hypothetical protein YP_922172.1 KEGG: sma:SAV3002 hypothetical protein YP_922173.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sma:SAV785 hypothetical protein YP_922174.1 PFAM: ABC-1 domain protein; KEGG: sma:SAV3068 ABC transporter ATP-binding protein YP_922175.1 PFAM: FAD dependent oxidoreductase; KEGG: sco:SCO7388 dehydrogenase YP_922176.1 KEGG: cgb:cg1735 secreted cell wall-associated hydrolase (invasion-associated protein) YP_922177.1 PFAM: PspC domain protein; KEGG: sco:SCO4903 hypothetical protein YP_922178.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fal:FRAAL1681 putative ABC transporter, ATP-binding protein YP_922179.1 PFAM: protein of unknown function DUF214; KEGG: fal:FRAAL1680 hypothetical protein; putative membrane protein; putative HPr serine phosphorylation domain YP_922180.1 PFAM: DGPFAETKE family protein; KEGG: rha:RHA1_ro00578 hypothetical protein YP_922181.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ret:RHE_CH02466 hypothetical protein YP_922182.1 PFAM: secretory lipase; KEGG: rha:RHA1_ro01045 hypothetical protein YP_922183.1 PFAM: regulatory protein, TetR; KEGG: rme:Rmet_5057 transcriptional regulator, TetR family YP_922184.1 KEGG: cya:CYA_0467 methionine-S-sulfoxide reductase; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A YP_922185.1 PFAM: aminotransferase, class V; Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: tfu:Tfu_0440 cystathionine gamma-synthase YP_922186.1 KEGG: dsy:DSY3235 hypothetical protein YP_922187.1 PFAM: protein of unknown function UPF0118; KEGG: lxx:Lxx16910 integral membrane protein YP_922188.1 catalyzes the formation of 2-oxobutanoate from L-threonine YP_922189.1 TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: tfu:Tfu_0447 prokaryotic transcription elongation factor GreA YP_922190.1 PFAM: LmbE family protein; KEGG: tfu:Tfu_0449 hypothetical protein YP_922192.1 PFAM: thiopurine S-methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: fal:FRAAL2901 putative methyltransferase YP_922193.1 KEGG: rha:RHA1_ro00065 hypothetical protein YP_922194.1 KEGG: gvi:glr0185 hypothetical protein YP_922195.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_922196.1 PFAM: UspA domain protein; KEGG: tfu:Tfu_3032 hypothetical protein YP_922197.1 PFAM: UspA domain protein; KEGG: rha:RHA1_ro00021 probable universal stress protein YP_922198.1 KEGG: nfa:nfa28960 hypothetical protein YP_922199.1 PFAM: CBS domain containing protein; KEGG: mmc:Mmcs_5097 putative signal-transduction protein with CBS domains YP_922200.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: fra:Francci3_3253 two component transcriptional regulator, LuxR family YP_922201.1 KEGG: sma:SAV1271 putative DNA-binding protein YP_922202.1 PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: tfu:Tfu_3046 GAF:ATP-binding region, ATPase-like YP_922203.1 KEGG: fra:Francci3_1002 hypothetical protein YP_922204.1 PFAM: UspA domain protein; KEGG: mpa:MAP1742c hypothetical protein YP_922205.1 PFAM: UspA domain protein; KEGG: rha:RHA1_ro02263 possible universal stress protein YP_922206.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: ade:Adeh_0468 cation transporting P-type ATPase YP_922207.1 KEGG: pac:PPA1465 hypothetical protein YP_922208.1 PFAM: UspA domain protein; KEGG: mmc:Mmcs_0719 UspA YP_922209.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: mfa:Mfla_1382 beta-lactamase-like protein YP_922210.1 KEGG: cef:CE2430 hypothetical protein YP_922211.1 PFAM: fructose-bisphosphate aldolase, class-I; KEGG: bxe:Bxe_B1334 fructose-bisphosphate aldolase YP_922212.1 PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: tfu:Tfu_1311 hypothetical protein YP_922213.1 PFAM: UspA domain protein; KEGG: mpa:MAP1742c hypothetical protein YP_922214.1 PFAM: PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: xcv:XCV1708 histidine kinase-response regulator hybrid protein YP_922215.1 PFAM: phosphoesterase; KEGG: sma:SAV5971 secreted acid phosphatase YP_922216.1 PFAM: regulatory proteins, IclR; KEGG: mmc:Mmcs_1697 regulatory proteins, IclR YP_922217.1 TIGRFAM: 4-carboxymuconolactone decarboxylase; PFAM: alpha/beta hydrolase fold; Carboxymuconolactone decarboxylase; KEGG: mmc:Mmcs_1701 4-carboxymuconolactone decarboxylase YP_922218.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: mmc:Mmcs_1366 transcriptional regulator, LysR family YP_922219.1 KEGG: nfa:nfa35170 putative ayl-CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase YP_922220.1 KEGG: mmc:Mmcs_1702 3-oxoacid CoA-transferase, subunit A; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase YP_922221.1 KEGG: mmc:Mmcs_1703 3-oxoacid CoA-transferase, subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase YP_922222.1 PFAM: cysteinyl-tRNA synthetase, class Ia; KEGG: tfu:Tfu_1832 cysteine--tRNA ligase YP_922223.1 KEGG: mmc:Mmcs_1202 hypothetical protein YP_922225.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: sma:SAV4680 two-component system sensor kinase YP_922226.1 PFAM: regulatory protein, LuxR; response regulator receiver; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: nfa:nfa42530 putative two-component system response regulator YP_922227.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tfu:Tfu_1436 ABC-type multidrug transport system ATPase component YP_922228.1 KEGG: mmc:Mmcs_0550 putative ABC transporter membrane protein YP_922229.1 PFAM: protein of unknown function DUF255; KEGG: tfu:Tfu_0451 conserved hypothetical protein YP_922230.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: rha:RHA1_ro01400 probable transposase YP_922232.1 KEGG: cef:CE0046 hypothetical protein YP_922233.1 KEGG: hch:HCH_06379 hypothetical protein YP_922234.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: mbu:Mbur_1610 DegT/DnrJ/EryC1/StrS aminotransferase YP_922235.1 PFAM: AAA ATPase, central domain protein; KEGG: tde:TDE1329 ATPase, AAA family YP_922239.1 PFAM: aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; KEGG: tac:Ta0575 probable aspartate carbamoyltransferase, catalytic chain YP_922240.1 PFAM: Radical SAM domain protein; KEGG: rpe:RPE_3191 radical SAM domain protein YP_922241.1 PFAM: nitroreductase; KEGG: sth:STH638 nitroreductase YP_922243.1 PFAM: pentapeptide repeat protein YP_922245.1 PFAM: protein of unknown function DUF201 YP_922248.1 KEGG: sco:SCO2693 oxygenase (secreted protein) YP_922251.1 KEGG: mmc:Mmcs_0815 hypothetical protein YP_922253.1 PFAM: phage Gp37Gp68 family protein; KEGG: mbo:Mb2753 hypothetical protein YP_922256.1 KEGG: pfl:PFL_4977 site-specific recombinase, phage integrase family YP_922257.1 PFAM: protein of unknown function DUF255; KEGG: fra:Francci3_3900 protein of unknown function DUF255 YP_922258.1 PFAM: aldehyde dehydrogenase; KEGG: fal:FRAAL4279 putative aldehyde dehydrogenase YP_922259.1 PFAM: alpha/beta hydrolase fold; KEGG: mmc:Mmcs_0140 acylglycerol lipase YP_922260.1 PFAM: Hly-III family protein; KEGG: sco:SCO4978 putative integral membrane protein YP_922261.1 KEGG: tfu:Tfu_0456 di-trans-poly-cis-decaprenylcistransferase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase YP_922262.1 PFAM: PhoH family protein; SMART: Nucleotide binding protein, PINc; KEGG: sma:SAV3236 putative ATP-binding protein YP_922263.1 KEGG: tfu:Tfu_0458 secreted protein YP_922264.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle YP_922265.1 KEGG: sma:SAV2969 hypothetical protein YP_922266.1 TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: nfa:nfa32060 putative fumarate hydratase YP_922267.1 PFAM: protein of unknown function DUF1707; KEGG: sma:SAV5183 hypothetical protein YP_922268.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sco:SCO4240 ABC transporter ATP-binding protein YP_922269.1 PFAM: alpha/beta hydrolase fold; KEGG: rpc:RPC_1656 alpha/beta hydrolase fold YP_922270.1 PFAM: PGAP1 family protein; KEGG: sus:Acid_1787 PGAP1 family protein YP_922271.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese YP_922272.1 PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase; KEGG: mmc:Mmcs_2797 ABC transporter related YP_922273.1 TIGRFAM: NifC-like ABC-type porter; molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rha:RHA1_ro03637 probable ABC molybdenum transporter, permease protein YP_922274.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: mmc:Mmcs_0045 molybdenum ABC transporter, periplasmic molybdate-binding protein YP_922275.1 TIGRFAM: DNA binding domain, excisionase family; PFAM: regulatory protein, MerR; TOBE domain protein; KEGG: fal:FRAAL6311 molybdenum binding protein YP_922277.1 TIGRFAM: conserved repeat domain; KEGG: cel:H02F09.3 Hypothetical protein H02F09.3 YP_922278.1 TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit; KEGG: sma:SAV3212 putative exoribonuclease small subunit YP_922279.1 KEGG: sco:SCO5056 putative exoribonuclease large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit; nucleic acid binding, OB-fold, tRNA/helicase-type YP_922280.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_922281.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain; KEGG: sco:SCO7360 hypothetical protein YP_922282.1 PFAM: protein of unknown function DUF195; KEGG: fal:FRAAL6141 hypothetical protein; putative signal peptide; putative DNA recombination protein protein (RmuC-like ) YP_922283.1 TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: tfu:Tfu_0258 AP endonuclease, family 1:exodeoxyribonuclease III xth YP_922284.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_922289.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: pen:PSEEN0753 adenine specific DNA methylase YP_922290.1 PFAM: type III restriction enzyme, res subunit; KEGG: pac:PPA1612 putative type III restriction enzyme YP_922292.1 PFAM: Resolvase, N-terminal domain; KEGG: bcl:ABC2865 site-specific recombinase for integration and excision YP_922294.1 PFAM: Resolvase, N-terminal domain; Recombinase; KEGG: mmc:Mmcs_3518 recombinase YP_922295.1 PFAM: transposase IS3/IS911 family protein; KEGG: cef:CE2618 putative transposase YP_922298.1 KEGG: mta:Moth_2233 hypothetical protein YP_922299.1 KEGG: hne:HNE_2537 hypothetical protein YP_922300.1 PFAM: ExsB family protein; KEGG: mta:Moth_2235 ExsB YP_922301.1 PFAM: Radical SAM domain protein; KEGG: fra:Francci3_1753 radical SAM YP_922302.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: tma:TM0038 6-pyruvoyltetrahydropterin synthase YP_922303.1 PFAM: phage integrase family protein; KEGG: mmc:Mmcs_4828 phage integrase YP_922304.1 PFAM: helix-turn-helix domain protein; KEGG: fra:Francci3_0807 transcriptional regulator, XRE family YP_922305.1 KEGG: mmc:Mmcs_1430 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member-like protein YP_922306.1 PFAM: protein of unknown function DUF262; protein of unknown function DUF1524 RloF; KEGG: nar:Saro_0260 protein of unknown function DUF1524 RloF YP_922307.1 TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: xfa:XF2728 type I restriction-modification system DNA methylase YP_922308.1 PFAM: restriction modification system DNA specificity domain; KEGG: xfa:XF2726 type I restriction-modification system specificity determinant YP_922309.1 PFAM: restriction modification system DNA specificity domain; KEGG: hpa:HPAG1_0832 HP0790-like protein YP_922310.1 KEGG: xfa:XF2725 type I restriction-modification system endonuclease; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like YP_922311.1 KEGG: vvy:VV1848 hypothetical protein YP_922314.1 KEGG: pae:PA1915 hypothetical protein YP_922316.1 PFAM: FAD dependent oxidoreductase; KEGG: tfu:Tfu_2058 hypothetical protein YP_922317.1 PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; KEGG: pfl:PFL_5732 cytosine/purine/uracil/thiamine/allantoin permease family protein YP_922318.1 PFAM: aldehyde dehydrogenase; KEGG: mlo:mlr4198 aldehyde dehydrogenase YP_922319.1 PFAM: aldehyde dehydrogenase; KEGG: mes:Meso_4451 aldehyde dehydrogenase YP_922320.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: mca:MCA1204 sensory box histidine kinase/response regulator YP_922321.1 TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sco:SCO5621 RNA polymerase sigma factor WhiG YP_922322.1 PFAM: peptidase M23B; peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins; KEGG: tfu:Tfu_0368 hypothetical protein YP_922323.1 KEGG: bps:BPSS1265 hypothetical protein YP_922324.1 KEGG: sat:SYN_00814 tfp pilus assembly protein, major pilin YP_922325.1 KEGG: eba:ebA1616 general secretion protein H YP_922326.1 KEGG: bpm:BURPS1710b_2168 Hep_Hag family protein/haemagluttinin motif family protein/YadA-like domain protein YP_922329.1 KEGG: rxy:Rxyl_1165 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase YP_922330.1 PFAM: type II secretion system protein; KEGG: pca:Pcar_2147 type IV pilus biogenesis protein PilC YP_922331.1 PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; KEGG: tte:TTE1262 predicted ATPases involved in pili biogenesis, PilB homologs YP_922332.1 KEGG: sma:SAV4026 AmfC protein YP_922333.1 KEGG: dra:DR0442 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase YP_922334.1 TIGRFAM: type IV pilus assembly protein PilM; KEGG: ade:Adeh_0641 type IV pilus assembly protein PilM YP_922335.1 PFAM: Fimbrial assembly family protein YP_922337.1 KEGG: sus:Acid_4274 serine/threonine protein kinase YP_922339.1 PFAM: peptidase A24A, prepilin type IV; peptidase A24A domain protein; KEGG: rxy:Rxyl_1154 peptidase A24A-like protein YP_922340.1 KEGG: mag:amb2980 hypothetical 918 kDa protein Y4LL; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_922341.1 KEGG: rxy:Rxyl_2783 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_922342.1 KEGG: gme:Gmet_0700 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_922343.1 proposed role in polysaccahride synthesis YP_922344.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: sco:SCO4974 deaminase YP_922345.1 PFAM: Uricase; KEGG: rha:RHA1_ro01568 urate oxidase YP_922346.1 PFAM: Transthyretin; KEGG: nfa:nfa52430 hypothetical protein YP_922347.1 KEGG: rha:RHA1_ro01566 possible urate oxidase, N-terminal YP_922349.1 PFAM: protein of unknown function DUF202; KEGG: cgb:cg0135 putative inner membrane protein YP_922351.1 KEGG: sma:SAV2762 hypothetical protein YP_922352.1 KEGG: mmu:677305 hypothetical protein LOC677305 YP_922354.1 KEGG: csa:Csal_0055 putative hemagglutinin/hemolysin-related protein YP_922355.1 KEGG: afm:Afu4g03440 hypothetical protein YP_922356.1 KEGG: rha:RHA1_ro08006 possible growth inhibitor YP_922357.1 PFAM: NUDIX hydrolase; KEGG: sma:SAV3187 putative mutT-like protein YP_922359.1 KEGG: cch:Cag_1709 hypothetical protein YP_922360.1 PFAM: LmbE family protein; KEGG: sma:SAV3138 N-acetyl-1-D-myo-inosityl-2-amino-2-deoxy-alpha-D- glucopyranoside deacetylase YP_922362.1 PFAM: protein of unknown function DUF433; KEGG: rpc:RPC_2760 protein of unknown function DUF433 YP_922363.1 PFAM: VanW family protein; KEGG: rha:RHA1_ro05201 hypothetical protein YP_922364.1 PFAM: lipase, class 2; KEGG: rxy:Rxyl_2289 lipase, class 2 YP_922365.1 PFAM: glycerate kinase; KEGG: rha:RHA1_ro02573 glycerate kinase YP_922366.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: rha:RHA1_ro05076 possible carbonic anhydrase YP_922367.1 PFAM: cyclase family protein; KEGG: rxy:Rxyl_0352 putative cyclase YP_922368.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: mta:Moth_2268 alcohol dehydrogenase superfamily, zinc-containing YP_922369.1 PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: sme:SMb20130 putative dehydrogenase protein YP_922370.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: chy:CHY_0691 2Fe-2S iron-sulfur cluster binding domain YP_922371.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: rpb:RPB_4416 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding YP_922372.1 PFAM: protein of unknown function UPF0261; KEGG: hma:rrnB0188 hypothetical protein YP_922373.1 PFAM: protein of unknown function DUF849; KEGG: bcn:Bcen_4033 protein of unknown function DUF849 YP_922374.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: mta:Moth_0073 transcriptional regulator, GntR family YP_922375.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: sma:SAV6021 GntR-family transcriptional regulator YP_922376.1 PFAM: Transaldolase; KEGG: pac:PPA0454 transaldolase YP_922377.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rxy:Rxyl_1758 alcohol dehydrogenase, zinc-binding protein YP_922378.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: afu:AF1207 2-deoxy-D-gluconate 3-dehydrogenase (KduD) YP_922379.1 PFAM: beta-lactamase domain protein; KEGG: sco:SCO5091 cyclase YP_922380.1 PFAM: inner-membrane translocator; KEGG: hma:rrnAC2468 branched chain amino acid transporter permease protein YP_922381.1 PFAM: inner-membrane translocator; KEGG: csa:Csal_1419 inner-membrane translocator YP_922382.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tfu:Tfu_1184 branched-chain amino acid transport system ATP-binding protein YP_922383.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_4428 ABC transporter related YP_922384.1 KEGG: bpa:BPP2107 putative ABC transport system, solute-binding protein YP_922385.1 PFAM: PEP-utilising enzyme, mobile region; KEGG: bsu:BG14114 similar to pyruvate,water dikinase YP_922386.1 PFAM: pyruvate phosphate dikinase, PEP/pyruvate-binding; KEGG: mka:MK0252 phosphoenolpyruvate synthase/pyruvate phosphate dikinase YP_922387.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: afu:AF0091 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (HpcE-1) YP_922388.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: rxy:Rxyl_2236 antibiotic biosynthesis monooxygenase YP_922389.1 PFAM: aldehyde dehydrogenase; KEGG: rha:RHA1_ro00658 succinate-semialdehyde dehydrogenase (NAD(P)+) YP_922390.1 PFAM: tRNA synthetase, class II (D, K and N); nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: dge:Dgeo_0796 aspartyl-tRNA synthetase YP_922391.1 PFAM: conserved hypothetical protein 341; KEGG: sco:SCO4737 integral membrane protein YP_922392.1 PFAM: GCN5-related N-acetyltransferase; FR47 domain protein; KEGG: sma:SAV3130 acetyltransferase YP_922393.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: sco:SCO5135 ferredoxin YP_922394.1 catalyzes the formation of N-succinyl-LL-2,6-diaminopimelate from N-succinyl-L-2-amino-6-oxopimelate in lysine biosynthesis YP_922395.1 KEGG: sma:SAV3126 hypothetical protein YP_922396.1 KEGG: rha:RHA1_ro05962 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase YP_922397.1 PFAM: protein of unknown function DUF664; KEGG: sma:SAV7047 hypothetical protein YP_922398.1 PFAM: protein of unknown function DUF820; KEGG: lbl:LBL_0718 hypothetical protein YP_922399.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin) YP_922400.1 PFAM: luciferase family protein; KEGG: mmc:Mmcs_4324 luciferase-like protein YP_922401.1 catalyzes the formation of succinate and diaminoheptanedioate from succinyldiaminoheptanedioate YP_922402.1 PFAM: conserved hypothetical protein 730; KEGG: sco:SCO5140 hypothetical protein YP_922403.1 KEGG: pac:PPA0637 hypothetical protein YP_922405.1 PFAM: peptidase M14, carboxypeptidase A; KEGG: cya:CYA_2877 zinc carboxypeptidase YP_922406.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: sma:SAV3120 putative enoyl-CoA hydratase/isomerase YP_922407.1 PFAM: PaaX domain protein; PaaX domain protein, C-terminal domain; KEGG: sth:STH211 transcriptional regulatory protein, repressor-type YP_922408.1 PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: tfu:Tfu_0503 leucyl aminopeptidase YP_922410.1 PFAM: O-methyltransferase, family 3; Methyltransferase type 11; KEGG: fal:FRAAL6092 methyltransferase (O-methyltransferase) YP_922411.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in M. tuberculosis this protein is involved in heat shock, oxidative stress and virulence YP_922413.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: fra:Francci3_0069 peptidase S1 and S6, chymotrypsin/Hap YP_922414.1 TIGRFAM: DNA binding domain, excisionase family; PFAM: regulatory protein, MerR; KEGG: fra:Francci3_0771 putative transcriptional regulator YP_922415.1 KEGG: fal:FRAAL1311 hypothetical protein; putative signal peptide YP_922416.1 KEGG: fal:FRAAL1312 hypothetical protein YP_922417.1 KEGG: mmc:Mmcs_5112 hypothetical protein YP_922418.1 KEGG: rha:RHA1_ro02410 hypothetical protein YP_922419.1 PFAM: protein of unknown function UPF0089; KEGG: rha:RHA1_ro06332 hypothetical protein YP_922420.1 KEGG: tfu:Tfu_2483 hypothetical protein YP_922421.1 TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: tfu:Tfu_0433 delta-1-pyrroline-5-carboxylate dehydrogenase 1 YP_922423.1 KEGG: rha:RHA1_ro02087 hypothetical protein YP_922424.1 KEGG: pac:PPA1330 hypothetical protein YP_922425.1 PFAM: tryptophan 2,3-dioxygenase; KEGG: aba:Acid345_0682 tryptophan 2,3-dioxygenase YP_922426.1 PFAM: NAD-glutamate dehydrogenase; KEGG: sco:SCO2999 hypothetical protein YP_922427.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: mmc:Mmcs_4445 ABC transporter related YP_922428.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: mmc:Mmcs_4444 ABC transporter related YP_922429.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_922431.1 KEGG: reu:Reut_B3920 hypothetical protein YP_922432.1 PFAM: regulatory protein, TetR; KEGG: ade:Adeh_3099 transcriptional regulator, TetR family YP_922433.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro06221 possible dehydrogenase YP_922434.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: fra:Francci3_0182 glyoxalase/bleomycin resistance protein/dioxygenase YP_922435.1 PFAM: Ku domain protein; KEGG: mpa:MAP0875c hypothetical protein YP_922436.1 PFAM: ATP dependent DNA ligase; KEGG: fal:FRAAL4382 hypothetical protein YP_922437.1 KEGG: sma:SAV6775 secreted protein YP_922438.1 KEGG: mmc:Mmcs_4352 ATP dependent DNA ligase YP_922440.1 PFAM: peptidase S24, S26A and S26B; KEGG: mka:MK1031 type I signal peptidase YP_922441.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sma:SAV3481 two-component system response regulator YP_922442.1 PFAM: histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: tfu:Tfu_2550 ATP-binding region, ATPase-like:histidine kinase A, N-terminal YP_922443.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sco:SCO2843 putative N-acetylglucosamine-6-phosphate deacetylase YP_922444.1 PFAM: NLP/P60 protein; KEGG: sco:SCO1240 NLP/P60 family protein (secreted protein) YP_922447.1 KEGG: ath:At4g01985 expressed protein YP_922448.1 Converts oxaloacetate to phosphoenolpyruvate using ATP as an energy source YP_922449.1 PFAM: carboxyl transferase; KEGG: cdi:DIP0740 methylmalonyl-CoA decarboxylase, alpha-subunit YP_922450.1 KEGG: cdi:DIP0741 hypothetical protein YP_922451.1 PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: cdi:DIP0742 putative decarboxylase YP_922452.1 PFAM: Fibronectin, type III domain protein; KEGG: mbo:Mb0063 possible cellulase CelA1 (endoglucanase) (endo-1,4-beta-glucanase) (fi-cmcase) (carboxymethyl cellulase) YP_922453.1 PFAM: type II secretion system protein E; KEGG: fal:FRAAL1319 putative type II/type IV pathway secretion protein YP_922454.1 PFAM: type II secretion system protein; KEGG: fal:FRAAL1320 hypothetical protein YP_922455.1 PFAM: type II secretion system protein; KEGG: fal:FRAAL1321 hypothetical protein YP_922456.1 KEGG: fra:Francci3_0782 hypothetical protein YP_922457.1 PFAM: TadE family protein; KEGG: fal:FRAAL1323 hypothetical protein YP_922458.1 KEGG: fra:Francci3_0784 hypothetical protein YP_922460.1 KEGG: bba:Bd1210 hypothetical protein YP_922461.1 PFAM: Allergen V5/Tpx-1 family protein; KEGG: cac:CAC2230 uncharacterized protein of PR1 family, YkwD B.subtilis ortholog YP_922463.1 KEGG: bxe:Bxe_A2026 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_922464.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; KEGG: sma:SAV3185 magnesium or manganese-dependent protein phosphatase YP_922465.1 TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: mpa:MAP3175c peptide chain release factor RF-2 YP_922466.1 KEGG: sma:SAV1587 hypothetical protein YP_922468.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: dra:DR0933 alpha-amlyase YP_922469.1 KEGG: sma:SAV5104 putative cell division ATP-binding protein; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase YP_922470.1 PFAM: protein of unknown function DUF214; KEGG: pac:PPA1352 cell division protein YP_922471.1 PFAM: peptidase M23B; KEGG: ava:Ava_0183 peptidase M23B YP_922472.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap; KEGG: dme:Dmel_CG4927 CG4927 YP_922473.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_922474.1 PFAM: amidohydrolase 2; KEGG: nfa:nfa25480 putative amidohydrolase YP_922475.1 PFAM: regulatory protein, ArsR; KEGG: mlo:mll3559 probable transcription regulator YP_922476.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: fal:FRAAL4597 putative DNA binding protein YP_922477.1 PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: mlo:mll3558 hypothetical protein YP_922481.1 SMART: HNH nuclease; KEGG: fal:FRAAL3997 hypothetical protein YP_922482.1 PFAM: peptidase C11, clostripain; KEGG: mac:MA4003 clostripain YP_922483.1 PFAM: Ig domain protein, group 1 domain protein; KEGG: mpa:MAP3163 hypothetical protein YP_922484.1 KEGG: rxy:Rxyl_2608 transglycosylase-associated protein YP_922485.1 PFAM: histidine triad (HIT) protein; KEGG: sus:Acid_2826 histidine triad (HIT) protein YP_922486.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: sma:SAV7008 putative 3-oxoacyl-ACP reductase YP_922487.1 KEGG: sco:SCO6705 secreted protein YP_922488.1 PFAM: regulatory protein, TetR; KEGG: nfa:nfa30770 putative transcriptional regulator YP_922490.1 PFAM: protein of unknown function DUF179; KEGG: sma:SAV5129 putative transcriptional regulator YP_922491.1 KEGG: pac:PPA1685 hypothetical protein YP_922492.1 PFAM: type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sma:SAV5140 protein involving differentiation YP_922493.1 SMART: regulatory proteins, IclR; KEGG: sma:SAV5141 differentiation regulon (IclR-family transcriptional regulator) YP_922494.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: aba:Acid345_1672 methyl-accepting chemotaxis sensory transducer YP_922495.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: sco:SCO2928 AsnC-family transcriptional regulator YP_922496.1 KEGG: rha:RHA1_ro03041 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_922497.1 PFAM: major facilitator superfamily MFS_1; KEGG: nfa:nfa4770 putative transporter YP_922498.1 PFAM: regulatory protein, MarR; KEGG: rha:RHA1_ro05520 possible transcriptional regulator, MarR family YP_922499.1 PFAM: protein of unknown function DUF1697; KEGG: lic:LIC10638 hypothetical protein YP_922500.1 PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: sco:SCO2015 putative nucleotidase YP_922501.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rha:RHA1_ro03948 possible enoyl-CoA hydratase YP_922502.1 PFAM: isochorismatase hydrolase; KEGG: mmc:Mmcs_5114 isochorismatase hydrolase YP_922503.1 PFAM: ROK family protein; KEGG: sco:SCO6008 probable transcriptional repressor protein YP_922504.1 PFAM: extracellular solute-binding protein, family 1; KEGG: pac:PPA1966 bacterial extracellular solute-binding protein YP_922505.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pac:PPA1965 binding-protein-dependent transport permease YP_922506.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pac:PPA1964 binding-protein-dependent transport permease YP_922507.1 PFAM: N-acylglucosamine 2-epimerase; KEGG: tfu:Tfu_1736 hypothetical protein YP_922508.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate YP_922509.1 KEGG: sco:SCO2915 hypothetical protein YP_922510.1 PFAM: NUDIX hydrolase; KEGG: rha:RHA1_ro06443 MutT/NUDIX family protein YP_922511.1 PFAM: Mov34/MPN/PAD-1 family protein; KEGG: sma:SAV5162 hypothetical protein YP_922512.1 PFAM: thiamineS protein; KEGG: rha:RHA1_ro01437 possible molybdopterin biosynthesis protein YP_922513.1 KEGG: tfu:Tfu_2368 cysteine synthase K/M; TIGRFAM: cysteine synthases; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit YP_922514.1 KEGG: tbd:Tbd_2428 putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; SMART: PAC repeat-containing protein YP_922515.1 PFAM: sulfatase; type I phosphodiesterase/nucleotide pyrophosphatase; metalloenzyme domain protein; KEGG: bfr:BF3778 hypothetical protein YP_922516.1 converts L-glutamate to D-glutamate, a component of peptidoglycan YP_922517.1 PFAM: beta-lactamase domain protein; KEGG: tfu:Tfu_2366 hypothetical protein YP_922519.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: tfu:Tfu_2233 regulatory protein, LuxR:response regulator receiver YP_922520.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: sma:SAV1990 two-component system sensor kinase YP_922521.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tfu:Tfu_1436 ABC-type multidrug transport system ATPase component YP_922523.1 KEGG: sco:SCO6361 integral membrane protein YP_922524.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs YP_922525.1 TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; KEGG: nfa:nfa10960 HAM1 protein YP_922526.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: ttj:TTHA1390 acyltransferase family protein YP_922527.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sma:SAV5176 putative AhpC/TSA family protein YP_922528.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: sma:SAV3606 putative membrane protein YP_922529.1 KEGG: sma:SAV3606 putative membrane protein YP_922530.1 TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: sma:SAV3607 putative integral membrane transport protein YP_922531.1 KEGG: sma:SAV3608 putative ABC transporter ATP-binding protein; TIGRFAM: cobalt ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_922532.1 KEGG: sco:SCO2900 membrane protein YP_922533.1 PFAM: chaperonin Cpn10; KEGG: sma:SAV5178 putative GroES-family molecular chaperone YP_922534.1 PFAM: peptidase S45, penicillin amidase; KEGG: dra:DRA0255 aculeacin A acylase YP_922536.1 PFAM: Rieske [2Fe-2S] domain protein; FAD dependent oxidoreductase; KEGG: mpa:MAP1672 hypothetical protein YP_922537.1 TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: rha:RHA1_ro02920 tRNA processing ribonuclease BN YP_922538.1 PFAM: regulatory protein, LuxR; KEGG: sco:SCO0421 two-component response regulator YP_922539.1 PFAM: glycosyl transferase, family 2; KEGG: eba:ebA6116 putative beta-(1-3)-glucosyl transferase YP_922540.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: nfa:nfa23620 putative oxidoreductase YP_922541.1 KEGG: mag:amb1112 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; MASE1 domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_922542.1 PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: sco:SCO3798 possible chromosome condensation protein YP_922544.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; KEGG: cps:CPS_3335 serine protease, subtilase family YP_922545.1 PFAM: regulatory protein, ArsR; LexA DNA-binding domain protein; KEGG: mpa:MAP2725c hypothetical protein YP_922546.1 PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO0213 putative nitrate/nitrite transporter protein YP_922547.1 TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: sco:SCO6535 putative nitrate reductase alpha chain NarG YP_922548.1 TIGRFAM: nitrate reductase, beta subunit; KEGG: mmc:Mmcs_1262 nitrate reductase, beta subunit YP_922549.1 TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase, delta subunit; KEGG: nfa:nfa45510 putative nitrate reductase delta subunit YP_922550.1 TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase, gamma subunit; KEGG: mbo:Mb1765c probable nitrate reductase NarX YP_922551.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: mmc:Mmcs_5288 hemerythrin HHE cation binding region YP_922552.1 3'-5' exoribonuclease specific for small oligoribonuclotides YP_922553.1 PFAM: DoxX family protein; KEGG: fal:FRAAL1525 hypothetical protein; putative membrane protein; putative DoxD-like domain YP_922554.1 PFAM: DSBA oxidoreductase; KEGG: fra:Francci3_0913 DsbA oxidoreductase YP_922555.1 KEGG: mpa:MAP1053 hypothetical protein YP_922556.1 catalyzes the formation of inosine from adenosine YP_922557.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: mmc:Mmcs_1056 two component transcriptional regulator, LuxR family YP_922560.1 KEGG: ade:Adeh_3507 hypothetical protein YP_922562.1 KEGG: rha:RHA1_ro02307 hypothetical protein YP_922563.1 KEGG: rha:RHA1_ro02307 hypothetical protein YP_922564.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: nfa:nfa32740 hypothetical protein YP_922565.1 PFAM: peptidase M24; peptidase M24B, X-Pro dipeptidase/aminopeptidase domain protein; KEGG: tfu:Tfu_1744 Xaa-Pro aminopeptidase YP_922566.1 KEGG: tfu:Tfu_1996 putative integral membrane protein YP_922567.1 KEGG: pac:PPA1639 putative ABC transporter YP_922568.1 KEGG: pac:PPA1638 putative ABC transporter YP_922569.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: lxx:Lxx12825 single-strand DNA-binding protein YP_922570.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_922571.1 PFAM: regulatory protein, MarR; KEGG: nfa:nfa2240 putative transcriptional regulator YP_922572.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_922573.1 PFAM: regulatory protein, TetR; KEGG: ade:Adeh_2880 putative transcriptional regulator, TetR family YP_922574.1 PFAM: acyl-ACP thioesterase; thioesterase superfamily protein; KEGG: sco:SCO2676 hypothetical protein YP_922575.1 KEGG: sco:SCO4826 hypothetical protein YP_922576.1 KEGG: lma:LmjF31.2670 hypothetical protein, unknown function YP_922577.1 PFAM: globin; KEGG: sco:SCO2671 putative globin YP_922578.1 PFAM: OsmC family protein; KEGG: sma:SAV1862 putative ATP/GTP-binding protein YP_922579.1 PFAM: MscS Mechanosensitive ion channel; KEGG: fra:Francci3_1154 MscS mechanosensitive ion channel YP_922581.1 KEGG: fra:Francci3_1159 hypothetical protein YP_922582.1 TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: sco:SCO2643 aminopeptidase N YP_922583.1 TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: rxy:Rxyl_2688 chromate transporter YP_922584.1 KEGG: mmc:Mmcs_3603 DsbA oxidoreductase YP_922585.1 KEGG: fal:FRAAL5554 hypothetical protein YP_922586.1 KEGG: rha:RHA1_ro05008 hypothetical protein YP_922587.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_922588.1 KEGG: mmc:Mmcs_2426 class I peptide chain release factor YP_922589.1 PFAM: CoA-binding domain protein; KEGG: rha:RHA1_ro01695 possible CoA-binding protein YP_922591.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: sco:SCO3051 acyl-CoA dehydrogenase YP_922592.1 KEGG: sma:SAV1685 hypothetical protein YP_922593.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; KEGG: cya:CYA_2836 sensory box histidine kinase/response regulator YP_922594.1 PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: fal:FRAAL5992 SigH putative RNA polymerase sigma factor YP_922595.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_922596.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: pac:PPA1699 cell envelope-related transcriptional attenuator YP_922597.1 PFAM: protein of unknown function UPF0089; KEGG: rha:RHA1_ro00024 hypothetical protein YP_922598.1 PFAM: thioesterase superfamily protein; KEGG: sco:SCO3049 acyl-CoA hydrolase YP_922599.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: tfu:Tfu_0017 cell envelope-related transcriptional attenuator YP_922600.1 PFAM: glycosyl transferase, family 2; KEGG: cdi:DIP0168 putative glycosyl transferase YP_922601.1 PFAM: glycosyl transferase, family 2; KEGG: mth:MTH348 rhamnosyl transferase YP_922602.1 PFAM: UDP-galactopyranose mutase; KEGG: rha:RHA1_ro04053 UDP-galactopyranose mutase YP_922603.1 KEGG: rha:RHA1_ro04054 possible glycosyltransferase YP_922604.1 PFAM: ABC-2 type transporter; KEGG: lxx:Lxx05020 lipopolysaccharide exporter YP_922605.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lxx:Lxx05010 lipopolysaccharide exporter YP_922606.1 PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; FG-GAP repeat protein; SMART: Animal peptidoglycan recognition protein PGRP; KEGG: sma:SAV5036 hypothetical protein YP_922607.1 KEGG: sma:SAV5035 hypothetical protein YP_922608.1 PFAM: Nucleotidyl transferase; KEGG: lxx:Lxx04570 mannose-1-phosphate guanylyltransferase YP_922609.1 KEGG: fal:FRAAL1258 hypothetical protein; putative signal peptide YP_922610.1 TIGRFAM: F420-dependent oxidoreductase, putative; PFAM: protein of unknown function DUF129; KEGG: tfu:Tfu_2518 hypothetical protein YP_922611.1 catalyzes the formation of the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) and GMP from actyl (2) diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO) YP_922612.1 PFAM: transcription factor WhiB; KEGG: sco:SCO3034 sporulation regulatory protein YP_922613.1 PFAM: glycosyl transferase, family 2; KEGG: sma:SAV5043 hypothetical protein YP_922614.1 KEGG: tfu:Tfu_2513 hypothetical protein YP_922615.1 PFAM: ornithine cyclodeaminase/mu-crystallin; Shikimate/quinate 5-dehydrogenase; KEGG: eca:ECA2039 putative ornithine cyclodeaminase YP_922616.1 PFAM: alanine racemase domain protein; KEGG: bja:bll3964 hypothetical protein YP_922617.1 PFAM: aldo/keto reductase; KEGG: bja:blr1124 oxidoreductase YP_922618.1 PFAM: amidohydrolase; D-aminoacylase domain protein; Amidohydrolase 3; KEGG: mta:Moth_1302 N-acyl-D-amino-acid deacylase YP_922619.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_B0418 ABC sugar transporter, inner membrane subunit YP_922620.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_B0419 ABC sugar transporter, inner membrane subunit YP_922621.1 PFAM: extracellular solute-binding protein, family 1; KEGG: bmb:BruAb2_0484 sugar ABC transporter, periplasmic sugar-binding protein YP_922622.1 PFAM: aldehyde dehydrogenase; KEGG: gka:GK1919 aldehyde dehydrogenase YP_922623.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: mta:Moth_0073 transcriptional regulator, GntR family YP_922624.1 KEGG: fal:FRAAL1269 hypothetical protein YP_922625.1 KEGG: sma:SAV5046 hypothetical protein YP_922626.1 PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: sco:SCO3028 phosphomannomutase YP_922627.1 PFAM: protein of unknown function DUF343; KEGG: sma:SAV5049 hypothetical protein YP_922628.1 KEGG: pac:PPA1688 hypothetical protein YP_922629.1 PFAM: acyltransferase 3; KEGG: sma:SAV5444 hypothetical protein YP_922630.1 KEGG: fal:FRAAL2102 protoporphyrinogen oxidase; TIGRFAM: protoporphyrinogen oxidase; PFAM: amine oxidase; FAD dependent oxidoreductase YP_922631.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pai:PAE0596 metallo cofactor biosynthesis protein YP_922632.1 PFAM: protein of unknown function DUF808; KEGG: mmc:Mmcs_2667 protein of unknown function DUF808 YP_922633.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_922634.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sco:SCO3013 putative two-component system response regulator YP_922635.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: sco:SCO3012 putative two-component system histidine kinase YP_922636.1 KEGG: lxx:Lxx05370 lipoprotein YP_922637.1 KEGG: sco:SCO3010 hypothetical protein YP_922638.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: sma:SAV5067 hypothetical protein YP_922639.1 PFAM: regulatory protein, LuxR; response regulator receiver; Bacterio-opsin activator, HTH domain protein; KEGG: sma:SAV5068 putative two-component system response regulator YP_922640.1 PFAM: protein of unknown function DUF1006; KEGG: tfu:Tfu_0254 hypothetical protein YP_922641.1 TIGRFAM: preprotein translocase, SecA subunit; PFAM: helicase domain protein; SEC-C motif domain protein; SecA DEAD domain protein; SecA Wing and Scaffold; SecA preprotein cross-linking region; KEGG: sma:SAV5071 preprotein translocase SecA subunit YP_922642.1 KEGG: fal:FRAAL1307 hypothetical protein YP_922643.1 KEGG: fra:Francci3_1730 response regulator receiver and SARP domain protein YP_922644.1 KEGG: fra:Francci3_0770 hypothetical protein YP_922645.1 mediates the export of protein precursors bearing twin-arginine signal peptides YP_922646.1 PFAM: protein of unknown function DUF59; KEGG: sma:SAV3112 putative ATP-binding protein YP_922647.1 PFAM: protein of unknown function DUF1003; KEGG: sma:SAV3111 hypothetical protein YP_922648.1 PFAM: CBS domain containing protein; MgtE intracellular region; KEGG: sma:SAV3110 magnesium (Mg2+) transporter YP_922650.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: hch:HCH_02985 beta-glucanase/beta-glucan synthetase YP_922651.1 KEGG: sma:SAV5466 hypothetical protein YP_922652.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pat:Patl_3212 coagulation factor 5/8 type-like YP_922655.1 KEGG: sma:SAV5466 hypothetical protein YP_922657.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: sma:SAV1915 putative acyl-CoA dehydrogenase YP_922660.1 PFAM: MaoC domain protein dehydratase; KEGG: sco:SCO6470 hypothetical protein YP_922661.1 PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro06868 probable transporter, MFS superfamily YP_922662.1 PFAM: TrkA-N domain protein; KEGG: mlo:mll0907 probable secreted protein YP_922663.1 PFAM: Phosphoglycerate mutase; KEGG: fal:FRAAL1530 putative phosphoglycerate mutase family protein YP_922664.1 SMART: HNH nuclease; KEGG: fal:FRAAL3997 hypothetical protein YP_922665.1 KEGG: tfu:Tfu_0510 hypothetical protein YP_922666.1 PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: pac:PPA1328 predicted metal-dependent phosphoesterase YP_922667.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sco:SCO4764 putative dehydrogenase YP_922668.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: fal:FRAAL6061 putative partitioning or sporulation protein YP_922669.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: sco:SCO4430 secreted protein YP_922670.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: pac:PPA1325 putative ATP-dependent RNA helicase YP_922671.1 KEGG: sma:SAV3097 hypothetical protein YP_922672.1 KEGG: sco:SCO1819 integral membrane protein YP_922673.1 KEGG: sma:SAV3095 hypothetical protein YP_922674.1 PFAM: regulatory protein, TetR; KEGG: sco:SCO5170 TetR-family transcriptional regulator YP_922675.1 PFAM: UBA/THIF-type NAD/FAD binding protein; Rhodanese domain protein; MoeZ/MoeB domain protein; KEGG: sma:SAV3082 molybdopterin biosynthesis protein MoeB YP_922677.1 KEGG: sco:SCO6136 transmembrane protein YP_922679.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: mmc:Mmcs_0154 ATPase associated with various cellular activities, AAA_3 YP_922680.1 PFAM: protein of unknown function DUF58; KEGG: mpa:MAP3217c hypothetical protein YP_922682.1 PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: tfu:Tfu_0522 hypothetical protein YP_922683.1 KEGG: rha:RHA1_ro04496 ABC transporter, ATP-binding component; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_922684.1 PFAM: ABC-2 type transporter; KEGG: rha:RHA1_ro04497 ABC transporter, permease component YP_922685.1 PFAM: protein of unknown function DUF1116; KEGG: mta:Moth_2121 protein of unknown function DUF1116 YP_922686.1 PFAM: FdrA family protein; KEGG: ecp:ECP_4036 YahF/FdrA-like protein YP_922688.1 KEGG: rha:RHA1_ro05298 hypothetical protein YP_922689.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: rha:RHA1_ro03492 possible xanthine/uracil permease YP_922690.1 PFAM: molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: rha:RHA1_ro03491 dehydrogenase YP_922691.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rha:RHA1_ro03490 probable carbon monoxide dehydrogenase small subunit (ferredoxin) YP_922692.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: rha:RHA1_ro03489 probable carbon monoxide dehydrogenase large subunit YP_922693.1 PFAM: carbon monoxide dehydrogenase subunit G; KEGG: rha:RHA1_ro03488 possible carbon monoxide dehydrogenase protein G YP_922694.1 PFAM: Amidase; KEGG: rha:RHA1_ro04799 probable amidase YP_922695.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: lxx:Lxx12140 1-acylglycerol-3-phosphate O-acyltransferase YP_922696.1 PFAM: Amidohydrolase 3; KEGG: bja:bll7276 putative cytosine deaminase YP_922697.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: rha:RHA1_ro03487 probable hydantoin utilization protein A YP_922698.1 PFAM: Hydantoinase B/oxoprolinase; KEGG: rha:RHA1_ro03486 probable hydantoin utilization protein B YP_922699.1 KEGG: fal:FRAAL0649 hypothetical protein YP_922700.1 PFAM: NmrA family protein; KEGG: rha:RHA1_ro03485 hypothetical protein YP_922701.1 PFAM: protein of unknown function DUF124; KEGG: tko:TK0182 hypothetical protein YP_922702.1 PFAM: protein of unknown function DUF985; KEGG: blo:BL1117 narrowly conserved hypothetical protein YP_922703.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: sco:SCO1335 putative oxidoreductase YP_922704.1 KEGG: sco:SCO3603 putative Na(+)/H(+) antiporter YP_922705.1 catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP YP_922706.1 KEGG: rha:RHA1_ro05296 cyanuric acid amidohydrolase YP_922707.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rha:RHA1_ro02936 probable formyl-CoA transferase YP_922708.1 PFAM: ThiJ/PfpI domain protein; KEGG: bca:BCE_2883 hypothetical protein YP_922709.1 PFAM: UvrD/REP helicase; KEGG: sco:SCO5183 ATP-dependent DNA helicase YP_922710.1 PFAM: UvrD/REP helicase; KEGG: fra:Francci3_3799 UvrD/REP helicase YP_922713.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sma:SAV1562 oxidoreductase YP_922714.1 TIGRFAM: purine nucleoside phosphorylase; PFAM: purine and other phosphorylases, family 1; KEGG: oih:OB2345 purine nucleoside phosphorylase YP_922715.1 PFAM: NUDIX hydrolase; KEGG: tfu:Tfu_0527 conserved hypothetical protein YP_922716.1 TIGRFAM: Glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: sco:SCO5187 glutaredoxin-like protein YP_922717.1 PFAM: UvrD/REP helicase; HRDC domain protein; KEGG: sco:SCO5188 putative ATP-dependent DNA helicase YP_922718.1 PFAM: HMG-I and HMG-Y, DNA-binding domain protein; transcription factor WhiB; KEGG: sco:SCO5190 DNA-binding protein YP_922720.1 KEGG: mmc:Mmcs_1412 hypothetical protein YP_922721.1 KEGG: fra:Francci3_1839 hypothetical protein YP_922722.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rme:Rmet_5150 enoyl-CoA hydratase/isomerase YP_922723.1 PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: nfa:nfa41810 hypothetical protein YP_922724.1 PFAM: protein of unknown function DUF45; KEGG: sco:SCO5194 hypothetical protein YP_922725.1 PFAM: NUDIX hydrolase; KEGG: tfu:Tfu_0535 hypothetical protein YP_922726.1 KEGG: sma:SAV3061 hypothetical protein YP_922727.1 PFAM: molybdopterin biosynthesis MoaE; KEGG: sma:SAV3059 putative molybdopterin biosynthesis protein E YP_922729.1 PFAM: PDZ/DHR/GLGF domain protein; KEGG: fal:FRAAL6029 putative secreted protein YP_922730.1 KEGG: sma:SAV3056 hypothetical protein YP_922731.1 PFAM: protein of unknown function UPF0182; KEGG: sco:SCO5204 integral membrane protein YP_922732.1 PFAM: major facilitator superfamily MFS_1; KEGG: bpm:BURPS1710b_A1561 light regulation of gametogenesis6 protein YP_922733.1 TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: rha:RHA1_ro03075 probable chromate transporter, chromate ion transporter family YP_922734.1 KEGG: rha:RHA1_ro03074 probable chromate resistance protein YP_922735.1 KEGG: rha:RHA1_ro03073 possible chromate resistance protein YP_922736.1 KEGG: rha:RHA1_ro03072 possible surface antigen protein YP_922737.1 TIGRFAM: DNA binding domain, excisionase family; KEGG: rxy:Rxyl_1923 phage transcriptional regulator, AlpA YP_922739.1 KEGG: fra:Francci3_1784 hypothetical protein YP_922740.1 PFAM: SAF domain; KEGG: sco:SCP1.167 hypothetical protein YP_922741.1 KEGG: sco:SCO4525 hypothetical protein YP_922742.1 PFAM: type II secretion system protein E; KEGG: sco:SCO4526 protein kinase YP_922743.1 KEGG: sco:SCO4527 integral membrane protein YP_922744.1 PFAM: type II secretion system protein; KEGG: sco:SCO4528 integral membrane protein YP_922746.1 KEGG: fra:Francci3_1733 putative membrane protein YP_922747.1 PFAM: TadE family protein; KEGG: sco:SCP1.174 hypothetical protein YP_922748.1 KEGG: fra:Francci3_3328 putative membrane protein YP_922749.1 PFAM: Peptidoglycan-binding LysM; KEGG: sma:SAV192 hypothetical protein YP_922750.1 PFAM: major facilitator superfamily MFS_1; KEGG: fra:Francci3_2321 major facilitator superfamily MFS_1 YP_922751.1 PFAM: polysaccharide deacetylase; KEGG: sco:SCO1129 secreted deacetylase YP_922752.1 KEGG: sco:SCO1126 hypothetical protein YP_922753.1 KEGG: pac:PPA2014 conserved membrane protein (DedA family) YP_922754.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: sco:SCO4133 integral membrane protein YP_922755.1 KEGG: fal:FRAAL3677 hypothetical protein; putative DedA family membrane protein YP_922756.1 KEGG: sma:SAV1313 hypothetical protein YP_922757.1 KEGG: fra:Francci3_2388 hypothetical protein YP_922759.1 KEGG: bbr:BB1276 putative integral membrane protein YP_922760.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: fra:Francci3_2401 two component transcriptional regulator, winged helix family YP_922761.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: fal:FRAAL3820 putative transmembrane sensory transduction histidine kinase for metal resistance YP_922762.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: vpa:VP2408 hypothetical protein YP_922763.1 PFAM: glycosyl transferase, family 2; KEGG: fra:Francci3_2271 dolichyl-phosphate beta-D-mannosyltransferase YP_922764.1 PFAM: glycosyl transferase, group 1; KEGG: mac:MA0798 N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein YP_922765.1 PFAM: LmbE family protein; KEGG: mpa:MAP2993 hypothetical protein YP_922771.1 KEGG: fal:FRAAL0037 hypothetical protein; putative membrane protein YP_922772.1 KEGG: fal:FRAAL0036 putative integral membrane protein YP_922773.1 KEGG: sco:SCO6878 ATP-binding protein YP_922774.1 PFAM: peptidase M23B; KEGG: blo:BL0895 narrowly conserved hypothetical protein YP_922775.1 KEGG: rha:RHA1_ro09096 hypothetical protein YP_922777.1 KEGG: sma:SAV4509 conjugative transfer gene complex protein YP_922780.1 KEGG: rpc:RPC_4006 hypothetical protein YP_922781.1 PFAM: TOPRIM domain protein; DNA primase catalytic core, N-terminal domain; SMART: Toprim sub domain protein; KEGG: mmc:Mmcs_1430 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member-like protein YP_922782.1 KEGG: sco:SCP1.352 hypothetical protein YP_922783.1 PFAM: ParB domain protein nuclease; KEGG: rha:RHA1_ro03182 possible chromosome partitioning protein-like protein YP_922786.1 KEGG: pat:Patl_3755 hypothetical protein YP_922787.1 PFAM: restriction endonuclease; KEGG: mbo:Mb2557c probable restriction system protein MRR YP_922788.1 KEGG: stc:str1376 type II restriction-modification system modification subunit YP_922789.1 PFAM: type III restriction enzyme, res subunit; SMART: DEAD-like helicases-like; KEGG: spd:SPD_1079 type II restriction endonuclease, putative YP_922790.1 PFAM: Eco57I restriction endonuclease; KEGG: stc:str1375 type II restriction-modification system restriction subunit YP_922791.1 PFAM: phage integrase family protein; KEGG: fal:FRAAL6356 putative tyrosine recombinase XerD YP_922792.1 PFAM: transposase IS3/IS911 family protein; KEGG: cef:CE2618 putative transposase YP_922793.1 PFAM: Integrase, catalytic region; KEGG: cef:CE2619 putative transposase YP_922794.1 KEGG: fal:FRAAL6356 putative tyrosine recombinase XerD YP_922795.1 KEGG: sme:SMc02477 hypothetical protein YP_922796.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: fal:FRAAL0031 conserved hypothetical protein; putative integral membrane protein YP_922797.1 PFAM: mannose-6-phosphate isomerase, type II; Cupin 2, conserved barrel domain protein; KEGG: syn:slr0493 putative mannose-1-phosphate guanylyltransferase YP_922798.1 PFAM: GtrA family protein; KEGG: tfu:Tfu_2548 hypothetical protein YP_922799.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rha:RHA1_ro08012 response regulator, two-component system YP_922800.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rha:RHA1_ro08011 sensory histidine kinase YP_922802.1 PFAM: protein of unknown function DUF347; KEGG: fal:FRAAL6358 putative integral membrane protein (partial match) YP_922803.1 KEGG: fra:Francci3_2390 glycosyl transferase, family 39 YP_922804.1 PFAM: phosphoesterase; KEGG: fal:FRAAL3218 putative acid phosphatase YP_922805.1 PFAM: glycosyl transferase, family 2; KEGG: ade:Adeh_2624 dolichyl-phosphate beta-D-mannosyltransferase YP_922806.1 PFAM: protein of unknown function DUF214; KEGG: sco:SCO6365 putative integral membrane protein YP_922807.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rha:RHA1_ro03122 ABC lipoprotein transporter, ATP-binding component YP_922808.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO6367 ABC transporter ATP-binding protein YP_922809.1 KEGG: sco:SCO6368 lipoprotein YP_922810.1 KEGG: rha:RHA1_ro08010 hypothetical protein YP_922811.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rha:RHA1_ro08012 response regulator, two-component system YP_922812.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rha:RHA1_ro08011 sensory histidine kinase YP_922813.1 KEGG: sil:SPOA0410 hypothetical protein YP_922814.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rha:RHA1_ro08549 response regulator, two-component system YP_922815.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rha:RHA1_ro00073 sensor kinase, two-component system YP_922816.1 PFAM: phage integrase family protein; KEGG: fal:FRAAL6356 putative tyrosine recombinase XerD YP_922817.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: rha:RHA1_ro08265 possible carboxymuconolactone decarboxylase YP_922818.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: afu:AF2137 hypothetical protein YP_922819.1 KEGG: gme:Gmet_1011 antibiotic biosynthesis monooxygenase YP_922820.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: lsl:LSL_1782 transcriptional regulator, crp family YP_922821.1 KEGG: ade:Adeh_0447 hypothetical protein YP_922822.1 PFAM: cytochrome c oxidase, subunit II; KEGG: tdn:Tmden_0103 putative cytochrome c oxidase subunit II YP_922823.1 PFAM: cytochrome c oxidase, subunit I; KEGG: tdn:Tmden_0104 cytochrome c oxidase, subunit I YP_922824.1 tryptophan indole-lyase; catalyzes the formation of indole and pyruvate from tryptophan YP_922825.1 PFAM: regulatory protein, AsnC/Lrp family; helix-turn-helix, HxlR type; KEGG: tfu:Tfu_0920 regulatory proteins, AsnC/Lrp YP_922826.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: fra:Francci3_0845 amidohydrolase YP_922827.1 PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: mta:Moth_2000 pyridoxal-5'-phosphate-dependent enzyme, beta subunit YP_922828.1 PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: hal:VNG2430G threonine synthase YP_922829.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: mta:Moth_1957 amidohydrolase YP_922830.1 PFAM: luciferase family protein; KEGG: hma:pNG7255 F420-dependent N5,N10-methylene-tetrahydromethanopterin reductase YP_922831.1 KEGG: pho:PH0720 aspartate carbamoyltransferase catalytic chain; TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YP_922832.1 PFAM: aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; KEGG: mta:Moth_1996 ornithine carbamoyltransferase YP_922833.1 PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: ecc:c3458 hypothetical protein YgfM YP_922834.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: hma:pNG7246 possible hypoxanthine oxidase XdhD YP_922835.1 KEGG: sus:Acid_7659 dihydropyrimidinase; TIGRFAM: dihydropyrimidinase; PFAM: amidohydrolase; Amidohydrolase 3 YP_922836.1 PFAM: ferredoxin; molybdopterin dehydrogenase, FAD-binding; [2Fe-2S]-binding domain protein; CO dehydrogenase flavoprotein domain protein; KEGG: sco:SCO4971 putative dehydrogenase YP_922837.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: dge:Dgeo_2604 xanthine dehydrogenase YP_922838.1 PFAM: protein of unknown function DUF182; KEGG: sco:SCO4973 xanthine dehydrogenase accessory factor YP_922839.1 KEGG: mxa:MXAN_7473 hypothetical protein YP_922840.1 PFAM: protein of unknown function DUF323; KEGG: bbr:BB1966 hypothetical protein YP_922841.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: rxy:Rxyl_1332 transcriptional regulator, Crp/Fnr family YP_922844.1 PFAM: protein of unknown function DUF427; KEGG: dge:Dgeo_1745 protein of unknown function DUF427 YP_922845.1 TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sco:SCO3446 putative dehalogenase YP_922846.1 PFAM: regulatory protein, MerR; KEGG: mbo:Mb3367 probable transcriptional regulatory protein (probably MerR-family) YP_922847.1 KEGG: nfa:pnf2590 putative alkylmercury lyase YP_922848.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: sep:SE0080 regulatory protein YP_922849.1 catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate YP_922850.1 catalyzes the formation of acetyl-CoA from acetalaldehyde YP_922851.1 PFAM: Hydratase/decarboxylase; KEGG: nfa:nfa33180 putative hydratase YP_922852.1 PFAM: regulatory proteins, IclR; KEGG: rha:RHA1_ro08086 transcriptional regulator, IclR family YP_922854.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: cjk:jk0549 putative lipase/esterase LipN YP_922855.1 PFAM: carbohydrate kinase, FGGY; KEGG: mxa:MXAN_2879 putative xylulokinase YP_922856.1 PFAM: class II aldolase/adducin family protein; aminotransferase class-III; KEGG: psp:PSPPH_2738 glutamate-1-semialdehyde aminotransferase YP_922857.1 KEGG: fra:Francci3_3797 hypothetical protein YP_922858.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer YP_922860.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: rxy:Rxyl_1803 transcriptional regulator, Crp/Fnr family YP_922861.1 KEGG: sco:SCO4689 hypothetical protein YP_922862.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: cgb:cg3295 cation transport ATPase YP_922863.1 PFAM: Heavy metal transport/detoxification protein; KEGG: cgb:cg1328 putative copper chaperone YP_922864.1 PFAM: regulatory protein, TetR; KEGG: mmc:Mmcs_0484 transcriptional regulator, TetR family YP_922865.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rha:RHA1_ro06063 probable ABC transporter, ATP-binding component YP_922866.1 KEGG: rha:RHA1_ro06064 possible ABC antibiotics transporter YP_922867.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; KEGG: sru:SRU_2653 3-beta hydroxysteroid dehydrogenase/isomerase family YP_922868.1 KEGG: rfr:Rfer_1964 putative dehydrogenase YP_922869.1 PFAM: condensation domain protein; protein of unknown function UPF0089; KEGG: sru:SRU_2506 uncharacterized protein family (UPF0089) YP_922870.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: mag:amb3735 signal transduction histidine kinase YP_922872.1 KEGG: mmr:Mmar10_0244 hypothetical protein YP_922873.1 KEGG: mes:Meso_2289 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_922874.1 KEGG: bha:BH0230 hypothetical protein YP_922875.1 PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like; KEGG: lxx:Lxx07490 ATP-dependent RNA helicase YP_922876.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rha:RHA1_ro01261 sigma factor, sigma 70 type, group 4 YP_922877.1 KEGG: rha:RHA1_ro01260 possible membrane protein YP_922878.1 PFAM: CDP-alcohol phosphatidyltransferase; sulfatase; KEGG: sma:SAV5650 hypothetical protein YP_922879.1 KEGG: sma:SAV1797 dehydrogenase YP_922880.1 KEGG: sco:SCO6650 hypothetical protein YP_922881.1 PFAM: glycosyl transferase, group 1; KEGG: sma:SAV1795 glycosyl transferase YP_922882.1 KEGG: sma:SAV1793 hypothetical protein YP_922883.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: nfa:nfa33100 putative riboflavin-specific deaminase YP_922884.1 catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate YP_922885.1 TIGRFAM: peptidase S26B, signal peptidase; PFAM: cellulose-binding, family II; peptidase S24, S26A and S26B; KEGG: rpd:RPD_3003 outer membrane autotransporter barrel YP_922887.1 KEGG: cne:CND01740 ceramidase YP_922888.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: ade:Adeh_2233 transcriptional regulator, GntR family YP_922889.1 PFAM: amino acid permease-associated region; KEGG: bte:BTH_II1129 amino acid permease YP_922890.1 KEGG: mxa:MXAN_6640 hypothetical protein YP_922891.1 TIGRFAM: cytidyltransferase-related domain; PFAM: Riboflavin kinase / FAD synthetase; cytidylyltransferase; KEGG: ppr:PBPRA2703 putative glycerol-3-phosphate cytidyltransferase YP_922892.1 PFAM: protein of unknown function DUF445; KEGG: fra:Francci3_2863 protein of unknown function DUF445 YP_922893.1 PFAM: RNA-binding S4 domain protein; KEGG: rha:RHA1_ro03734 hypothetical protein YP_922894.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: sma:SAV6687 putative FK-506 binding protein, peptidyl-prolyl cis-trans isomerase YP_922895.1 PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: fal:FRAAL0362 putative integral membrane protein YP_922896.1 PFAM: CBS domain containing protein; KEGG: mpa:MAP2219c hypothetical protein YP_922897.1 TIGRFAM: histidinol-phosphate phosphatase, putative; PFAM: inositol monophosphatase; KEGG: pac:PPA1271 putative inositol monophosphatase YP_922899.1 PFAM: GTPase EngC; KEGG: sma:SAV3043 hypothetical protein YP_922900.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_922901.1 PFAM: DoxX family protein; KEGG: sco:SCO7372 hypothetical protein YP_922902.1 PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: sco:SCO4117 hypothetical protein YP_922904.1 PFAM: protein of unknown function DUF159; KEGG: rha:RHA1_ro08499 hypothetical protein YP_922905.1 KEGG: sma:SAV3039 hypothetical protein YP_922906.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sma:SAV3038 putative RNA polymerase ECF-subfamily sigma factor YP_922907.1 KEGG: tfu:Tfu_0549 anti-sigma factor YP_922908.1 KEGG: tfu:Tfu_0552 hypothetical protein YP_922909.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rha:RHA1_ro06470 possible acetyltransferase YP_922910.1 PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: tfu:Tfu_0553 acetolactate synthase large subunit YP_922911.1 KEGG: bat:BAS2855 hypothetical protein YP_922912.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation/phosphoacceptor; PAS fold-4 domain protein; KEGG: sma:SAV3017 two-component system sensor kinase YP_922913.1 PFAM: transcription factor WhiB; KEGG: pac:PPA1264 probable transcription factor WhiB3 YP_922914.1 KEGG: mpa:MAP3318c hypothetical protein YP_922915.1 PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: fal:FRAAL5992 SigH putative RNA polymerase sigma factor YP_922916.1 KEGG: fal:FRAAL5991 anti-sigma factor (partial match) YP_922917.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: afu:AF1018 ABC transporter, ATP-binding protein YP_922918.1 PFAM: protein of unknown function DUF214; KEGG: tte:TTE2713 ABC-type transport systems, involved in lipoprotein release, permease components YP_922919.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dra:DR2404 ABC transporter, ATP-binding protein, MsbA family YP_922920.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: chy:CHY_2508 ISChy2, transposase YP_922921.1 KEGG: mmc:Mmcs_1430 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member-like protein YP_922922.1 PFAM: helix-turn-helix domain protein; KEGG: fra:Francci3_0807 transcriptional regulator, XRE family YP_922923.1 KEGG: mmc:Mmcs_4829 hypothetical protein YP_922924.1 PFAM: phage integrase family protein; KEGG: nfa:nfa7110 putative phage integrase YP_922925.1 KEGG: sco:SCO5254 superoxide dismutase YP_922926.1 PFAM: peptidase S24, S26A and S26B; KEGG: sma:SAV2987 signal peptidase protein YP_922927.1 PFAM: malic enzyme domain protein; malic enzyme, NAD-binding; KEGG: sma:SAV2981 putative malate dehydrogenase YP_922928.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: tfu:Tfu_1276 alcohol dehydrogenase YP_922929.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: sma:SAV2750 short chain dehydrogenase YP_922930.1 PFAM: regulatory protein, TetR; KEGG: mmc:Mmcs_1257 transcriptional regulator, TetR family YP_922931.1 KEGG: rha:RHA1_ro01407 hypothetical protein YP_922934.1 KEGG: fra:Francci3_2783 conserved hypothetical protein YP_922935.1 KEGG: bja:blr3900 probable arylsulfatase YP_922936.1 KEGG: tfu:Tfu_0565 hypothetical protein YP_922937.1 kgd; produces succinic semialdehyde; part of alternative pathway from alpha-ketoglutarate to succinate; essential for normal growth YP_922939.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: mta:Moth_2366 cell envelope-related transcriptional attenuator YP_922941.1 SMART: HNH nuclease; KEGG: fal:FRAAL3997 hypothetical protein YP_922942.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_922943.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: pac:PPA1259 diaminopimelate decarboxylase YP_922944.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_922945.1 TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: sco:SCO5355 threonine synthase YP_922946.1 KEGG: sco:SCO5356 homoserine kinase; TIGRFAM: homoserine kinase; PFAM: GHMP kinase; GHMP kinase, C terminal domain protein YP_922947.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_922948.1 PFAM: response regulator receiver; KEGG: dsy:DSY2891 hypothetical protein YP_922949.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: mbu:Mbur_0510 external sensor signal transduction histidine kinase YP_922950.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_922951.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_922952.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: sco:SCO5361 putative methylase YP_922953.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain; KEGG: sma:SAV2910 hypothetical protein YP_922954.1 PFAM: glycosyl transferase, family 4; KEGG: pac:PPA1248 putative undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase YP_922955.1 KEGG: fal:FRAAL5940 putative ATP synthase protein I YP_922957.1 TIGRFAM: ATP synthase F0, A subunit; PFAM: H+-transporting two-sector ATPase, A subunit; KEGG: pac:PPA1245 ATP synthase A chain YP_922958.1 PFAM: H+-transporting two-sector ATPase, C subunit; KEGG: pac:PPA1244 ATP synthase C chain YP_922959.1 TIGRFAM: ATP synthase F0, B subunit; PFAM: H+-transporting two-sector ATPase, B/B' subunit; KEGG: rha:RHA1_ro01476 H(+)-transporting two-sector ATPase subunit B YP_922960.1 TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+-transporting two-sector ATPase, delta (OSCP) subunit; KEGG: sco:SCO5370 ATP synthase delta chain YP_922961.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_922962.1 KEGG: lxx:Lxx07040 ATP synthase, gamma chain; TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+-transporting two-sector ATPase, gamma subunit YP_922963.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_922964.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex YP_922965.1 KEGG: sma:SAV2879 hypothetical protein YP_922966.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: mtc:MT3905 IS1557, transposase YP_922967.1 PFAM: FAD linked oxidase domain protein; KEGG: nfa:nfa45960 putative oxidoreductase YP_922968.1 KEGG: nfa:nfa33290 putative transcriptional regulator YP_922969.1 PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro04560 probable transporter, MFS superfamily YP_922970.1 TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: sco:SCO5381 hypothetical protein YP_922971.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: sco:SCO5386 anti-sigma factor antagonist YP_922972.1 KEGG: sma:SAV1912 putative methylmalonyl-CoA mutase, coenzyme B12-dependent alpha subunit; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein YP_922974.1 PFAM: Ferritin, Dps family protein; KEGG: rha:RHA1_ro04028 probable ferritin YP_922976.1 KEGG: sco:SCO4438 integral membrane protein YP_922978.1 KEGG: lbl:LBL_1155 plastocyanin YP_922979.1 KEGG: bja:bll2443 hypothetical protein YP_922980.1 PFAM: FAD dependent oxidoreductase; KEGG: rxy:Rxyl_0526 D-amino acid oxidase YP_922981.1 PFAM: protein of unknown function DUF91; KEGG: nfa:nfa10710 hypothetical protein YP_922982.1 PFAM: chemotaxis sensory transducer; KEGG: ter:Tery_4229 methyl-accepting chemotaxis sensory transducer YP_922983.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: sco:SCO6475 oxidoreductase YP_922984.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: sma:SAV5186 sugar transport protein YP_922986.1 KEGG: tfu:Tfu_2558 hypothetical protein YP_922987.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: rxy:Rxyl_2930 peptidase S8 and S53, subtilisin, kexin, sedolisin YP_922988.1 KEGG: sco:SCO0537 secreted protein YP_922989.1 PFAM: alpha/beta hydrolase fold; KEGG: pac:PPA1101 putative esterase/lipase YbfF YP_922990.1 PFAM: protein of unknown function DUF1470; KEGG: mmc:Mmcs_1119 protein of unknown function DUF1470 YP_922991.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: mmc:Mmcs_1118 protein of unknown function DUF6, transmembrane YP_922992.1 PFAM: protein of unknown function UPF0118; KEGG: rha:RHA1_ro00086 hypothetical protein YP_922993.1 KEGG: tfu:Tfu_2396 putative cellulose-binding protein YP_922994.1 TIGRFAM: crotonyl-CoA reductase; PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sma:SAV1911 crotonyl-CoA reductase YP_922995.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rha:RHA1_ro01456 possible methylmalonyl-CoA epimerase YP_922996.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis YP_922997.1 TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; KEGG: sma:SAV2855 lysine arginine ornithine transport system kinase YP_922999.1 KEGG: fal:FRAAL2022 hypothetical protein YP_923000.1 PFAM: regulatory protein, MarR; KEGG: tfu:Tfu_2393 regulatory protein, MarR YP_923001.1 KEGG: sma:SAV2832 putative isobutyryl-CoA mutase, chain A; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase YP_923002.1 PFAM: acetyl-CoA hydrolase/transferase; KEGG: fra:Francci3_1561 4-hydroxybutyrate coenzyme A transferase YP_923003.1 PFAM: Thioredoxin domain; KEGG: sma:SAV2830 putative thioredoxin YP_923004.1 PFAM: NUDIX hydrolase; KEGG: pac:PPA1110 putative pyrophosphohydrolase YP_923005.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain YP_923006.1 KEGG: rha:RHA1_ro06042 hypothetical protein YP_923007.1 KEGG: sma:SAV2803 trehalose synthase; TIGRFAM: trehalose synthase; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain YP_923008.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: fra:Francci3_3678 alpha amylase, catalytic region YP_923009.1 PFAM: peptidase M36, fungalysin; KEGG: rxy:Rxyl_2538 coagulation factor 5/8 type-like protein YP_923010.1 KEGG: sma:SAV2800 putative glycogen phosphorylase; TIGRFAM: alpha-glucan phosphorylases; PFAM: glycosyl transferase, family 35 YP_923011.1 KEGG: sma:SAV2789 putative glycosyl hydrolase; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain YP_923012.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: sma:SAV2786 enoyl-CoA hydratase YP_923014.1 PFAM: electron transfer flavoprotein beta-subunit; KEGG: sco:SCO1082 putative electron transfer flavoprotein, beta subunit YP_923015.1 PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: sco:SCO1081 putative electron transfer flavoprotein, alpha subunit YP_923016.1 KEGG: sma:SAV4459 hypothetical protein YP_923017.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_923019.1 KEGG: cef:CE2257 putative nicotinate mononucleotide adenylyltransferase; TIGRFAM: cytidyltransferase-related domain; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase YP_923020.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: sma:SAV5480 hypothetical protein YP_923021.1 PFAM: Phosphoglycerate mutase; KEGG: tfu:Tfu_2169 putative phosphoglycerate mutase YP_923022.1 KEGG: fal:FRAAL1760 integrase YP_923023.1 PFAM: type IV pilus assembly PilZ YP_923024.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: mmc:Mmcs_1694 transcriptional regulator, AraC family YP_923025.1 PFAM: plasmid pRiA4b ORF-3 family protein; KEGG: cef:CE1215 hypothetical protein YP_923026.1 PFAM: regulatory protein, TetR; KEGG: nfa:nfa34140 putative transcriptional regulator YP_923027.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_923028.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sco:SCO1692 oxidoreductase YP_923029.1 PFAM: aminoglycoside phosphotransferase; KEGG: nfa:nfa34090 putative phosphotransferase YP_923030.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: nfa:nfa34080 putative acyl-CoA dehydrogenase YP_923031.1 PFAM: regulatory protein, TetR; KEGG: sma:SAV6602 TetR-family transcriptional regulator YP_923032.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro01497 3-oxoacyl-[acyl-carrier-protein] reductase YP_923033.1 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates YP_923034.1 KEGG: rha:RHA1_ro03580 hypothetical protein YP_923035.1 PFAM: FAD dependent oxidoreductase; KEGG: pfo:Pfl_0969 FAD dependent oxidoreductase YP_923036.1 PFAM: inner-membrane translocator; KEGG: dar:Daro_0271 inner-membrane translocator YP_923037.1 PFAM: inner-membrane translocator; KEGG: dvu:DVU0549 high-affinity branched-chain amino acid ABC transporter, permease protein YP_923038.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: wsu:WS1467 ABC transport system ATP-binding protein YP_923039.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO2012 putative branched chain amino acid transport ATP-binding protein YP_923040.1 PFAM: Extracellular ligand-binding receptor; KEGG: gsu:GSU3401 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative YP_923041.1 PFAM: MmgE/PrpD family protein; KEGG: sil:SPO0205 MmgE/PrpD family protein YP_923042.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rha:RHA1_ro06076 2,4-dienoyl-CoA reductase YP_923043.1 PFAM: Endoribonuclease L-PSP; KEGG: pfu:PF0668 hypothetical protein YP_923044.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: dsy:DSY2660 hypothetical protein YP_923045.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: dsy:DSY2660 hypothetical protein YP_923046.1 PFAM: FAD dependent oxidoreductase; KEGG: rha:RHA1_ro00338 probable sarcosine oxidase beta subunit YP_923047.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bam:Bamb_4144 short-chain dehydrogenase/reductase SDR YP_923048.1 PFAM: protein of unknown function DUF861, cupin_3; KEGG: fnu:FN0090 ethanolamine utilization protein EutQ YP_923049.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bxe:Bxe_C0508 putative dehydrogenase flavoprotein YP_923050.1 PFAM: NmrA family protein; KEGG: nfa:nfa29880 hypothetical protein YP_923051.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rfr:Rfer_2384 acyl-CoA dehydrogenase-like YP_923052.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: mmc:Mmcs_1118 protein of unknown function DUF6, transmembrane YP_923053.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: rha:RHA1_ro02687 possible 2-nitropropane dioxygenase YP_923054.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_923055.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro02735 probable 3-oxoacyl-[acyl-carrier-protein] reductase YP_923056.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: bcn:Bcen_4953 protein of unknown function DUF6, transmembrane YP_923057.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: fal:FRAAL4180 hypothetical protein YP_923059.1 KEGG: sma:SAV4769 amino acid transporter YP_923061.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: fal:FRAAL5304 sensory histidine kinase in two-component regulatory system wtih KdpE, regulation of potassium translocation YP_923062.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sco:SCO5872 putative turgor pressure regulator YP_923063.1 KEGG: rha:RHA1_ro04434 hypothetical protein YP_923064.1 PFAM: DSBA oxidoreductase; Na+/H+ antiporter NhaA; KEGG: rha:RHA1_ro01708 Na+/H+ antiporter, NhaA family YP_923065.1 KEGG: nfa:nfa55090 hypothetical protein YP_923066.1 PFAM: YceI family protein; KEGG: fal:FRAAL1996 hypothetical protein YP_923067.1 PFAM: regulatory protein, MarR; KEGG: fal:FRAAL1706 putative MarR-family transcriptional regulator YP_923068.1 PFAM: cytochrome P450; KEGG: eba:ebA6767 hypothetical heme-thiolate monooxygenase YP_923069.1 KEGG: nfa:nfa24740 hypothetical protein YP_923070.1 KEGG: ecj:JW4343 conserved hypothetical protein YP_923071.1 PFAM: Radical SAM domain protein; KEGG: ecp:ECP_4763 hypothetical protein YjjW YP_923073.1 KEGG: sus:Acid_6922 natural resistance-associated macrophage protein YP_923075.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: eli:ELI_09720 esterase YP_923076.1 KEGG: rha:RHA1_ro02551 hypothetical protein YP_923077.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: fal:FRAAL1709 putative phosphoglycolate phosphatase YP_923079.1 PFAM: FAD dependent oxidoreductase; KEGG: nfa:nfa43490 putative monooxygenase YP_923080.1 PFAM: protein of unknown function DUF839; KEGG: sco:SCO3790 hypothetical protein YP_923081.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_923082.1 TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: sma:SAV5490 hypothetical protein YP_923083.1 TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; SMART: Helix-hairpin-helix DNA-binding, class 1; KEGG: nfa:nfa13820 putative DNA-binding protein YP_923084.1 TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: sco:SCO2567 integral membrane protein YP_923085.1 TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; KEGG: sco:SCO2564 putative DNA polymerase III, delta subunit YP_923086.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_923087.1 KEGG: pac:PPA0191 hypothetical protein YP_923088.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_923089.1 PFAM: aminoglycoside/hydroxyurea antibiotic resistance kinase; KEGG: sma:SAV3961 hydroxyurea phosphotransferase YP_923090.1 PFAM: MOSC domain containing protein; KEGG: sma:SAV4995 hypothetical protein YP_923091.1 PFAM: AMP-dependent synthetase and ligase; KEGG: mmc:Mmcs_3602 AMP-dependent synthetase and ligase YP_923092.1 KEGG: fal:FRAAL2178 hypothetical protein YP_923093.1 KEGG: rha:RHA1_ro06213 possible DNA-directed DNA polymerase YP_923094.1 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase. YP_923095.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_923096.1 PFAM: TM2 domain containing protein+B7201; KEGG: rha:RHA1_ro01010 hypothetical protein YP_923097.1 KEGG: mmc:Mmcs_2324 hypothetical protein YP_923099.1 PFAM: beta-lactamase domain protein; KEGG: mbo:Mb1948 hypothetical protein YP_923100.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons YP_923101.1 TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ central domain protein; heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: sma:SAV5570 putative DnaJ protein YP_923102.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_923103.1 KEGG: rxy:Rxyl_2197 hypothetical protein YP_923105.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: tfu:Tfu_0842 putative RNA polymerase ECF-subfamily sigma factor YP_923106.1 PFAM: histidine triad (HIT) protein; KEGG: sma:SAV5575 protein kinase C inhibitor (HIT family) YP_923107.1 KEGG: sus:Acid_2373 calcium-binding EF-hand-containing protein YP_923109.1 PFAM: PhoH family protein; KEGG: tfu:Tfu_0844 phosphate starvation-inducible protein PhoH predicted ATPase YP_923110.1 PFAM: protein of unknown function UPF0054; KEGG: tfu:Tfu_0845 protein of unknown function UPF0054 YP_923111.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: pac:PPA0938 conserved protein, putative hemolysin YP_923112.1 KEGG: sma:SAV5589 hypothetical protein YP_923113.1 PFAM: FAD linked oxidase domain protein; KEGG: rha:RHA1_ro04208 hypothetical protein YP_923114.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rha:RHA1_ro04207 cyclopropane-fatty-acyl-phospholipid synthase YP_923115.1 PFAM: Siderophore-interacting protein; FAD-binding 9, siderophore-interacting domain protein; KEGG: rha:RHA1_ro06437 hypothetical protein YP_923116.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_923117.1 KEGG: sal:Sala_2850 hypothetical protein YP_923120.1 PFAM: ATP-binding region, ATPase domain protein domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: mtc:MT1410 sensory box protein/anti-anti-sigma factor YP_923121.1 PFAM: GAF domain protein; ANTAR domain protein; KEGG: sma:SAV1055 hypothetical protein YP_923122.1 PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: fra:Francci3_3755 sigma 28 subunit YP_923123.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sco:SCO6706 glutathione-dependent aldehyde dehydrogenase YP_923124.1 TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: tfu:Tfu_0850 yeast 2-isopropylmalate synthase YP_923125.1 KEGG: psb:Psyr_2940 PAS; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; MASE1 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_923126.1 PFAM: alpha/beta hydrolase fold; KEGG: gme:Gmet_0263 alpha/beta hydrolase fold YP_923127.1 TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O, RecO; KEGG: sco:SCO2510 DNA repair protein RecO (recombination protein O) YP_923128.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: sth:STH843 two-component sensor histidine kinase YP_923129.1 KEGG: tfu:Tfu_0853 di-trans-poly-cis-decaprenylcistransferase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase YP_923130.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: sth:STH843 two-component sensor histidine kinase YP_923131.1 PFAM: ferric-uptake regulator; KEGG: sma:SAV5631 putative metal uptake regulation protein YP_923132.1 PFAM: ABC-3 protein; KEGG: sco:SCO2507 putative metal transport ABC transporter YP_923133.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV5633 putative manganese transport system ABC transporter ATP-binding protein YP_923134.1 PFAM: periplasmic solute binding protein; KEGG: sco:SCO2505 putative ABC-transporter metal-binding lipoprotein YP_923135.1 KEGG: sma:SAV2712 hypothetical protein YP_923136.1 KEGG: tfu:Tfu_0860 hypothetical protein YP_923137.1 Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_923139.1 TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; KEGG: pac:PPA0954 TIM-barrel enzyme, NifR3 family YP_923140.1 KEGG: rha:RHA1_ro10028 possible peptidase YP_923142.1 KEGG: fra:Francci3_1281 deoxyguanosinetriphosphate triphosphohydrolase; TIGRFAM: putative deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region YP_923143.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: sma:SAV2735 dehydrogenase YP_923144.1 KEGG: pac:PPA0957 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger, CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core, N-terminal domain; SMART: Hedgehog/intein hint domain protein; Toprim sub domain protein; DNA primase DnaG, DnaB-binding YP_923145.1 KEGG: tfu:Tfu_0870 hypothetical protein YP_923146.1 KEGG: rde:RD1_2353 hypothetical protein YP_923147.1 KEGG: sus:Acid_2413 hypothetical protein YP_923148.1 PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: ade:Adeh_2146 cytochrome c biogenesis protein YP_923149.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mbu:Mbur_0983 ABC heme exporter, ATPase subunit YP_923150.1 PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: dra:DR0407 cytochrome c-type biogenesis protein, heme exporter protein B YP_923151.1 KEGG: ade:Adeh_3151 putative lipoprotein YP_923152.1 PFAM: cytochrome c assembly protein; KEGG: dra:DR0348 cytochrome c-type biogenesis protein, heme exporter protein C YP_923154.1 PFAM: CcmE/CycJ protein; KEGG: rpb:RPB_3449 CcmE/CycJ protein YP_923155.1 PFAM: cytochrome c assembly protein; KEGG: mxa:MXAN_3253 cytochrome c-type biogenesis protein CcmF YP_923156.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; Thioredoxin domain; KEGG: mxa:MXAN_3252 thiol:disulfide interchange protein DsbE YP_923157.1 PFAM: cytochrome C biogenesis protein; KEGG: dge:Dgeo_1249 cytochrome c biogenesis protein YP_923158.1 KEGG: bbr:BB2811 cytochrome C-type biogenesis protein YP_923159.1 PFAM: glutamyl-tRNA reductase; Shikimate/quinate 5-dehydrogenase; KEGG: rxy:Rxyl_1979 shikimate/quinate 5-dehydrogenase YP_923160.1 PFAM: LmbE family protein; KEGG: sco:SCO0804 hypothetical protein YP_923161.1 KEGG: sco:SCO0559 hypothetical protein YP_923162.1 PFAM: protein of unknown function DUF72; KEGG: rha:RHA1_ro02437 hypothetical protein YP_923163.1 PFAM: phage integrase family protein; KEGG: mmc:Mmcs_1422 phage integrase YP_923171.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: aba:Acid345_1526 methyl-accepting chemotaxis sensory transducer YP_923172.1 KEGG: sco:SCO4166 integral membrane protein YP_923173.1 KEGG: mmc:Mmcs_3634 hypothetical protein YP_923174.1 KEGG: mca:MCA1204 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_923175.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: nfa:nfa31920 putative serine/threonine protein kinase YP_923176.1 KEGG: sco:SCO1818 tyrosyl-tRNA synthetase; TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase, class Ib; RNA-binding S4 domain protein YP_923177.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; ferredoxin-dependent glutamate synthase; KEGG: dra:DR1031 (S)-2-hydroxy-acid oxidase YP_923178.1 KEGG: fra:Francci3_3166 tetratricopeptide TPR_2 YP_923179.1 PFAM: protein phosphatase 2C domain protein; KEGG: cef:CE0037 putative protein phosphatase YP_923180.1 PFAM: alpha/beta hydrolase fold; KEGG: rha:RHA1_ro05212 probable hydrolase YP_923181.1 KEGG: sco:SCO2391 hypothetical protein YP_923183.1 PFAM: carboxyl transferase; KEGG: mmc:Mmcs_3368 propionyl-CoA carboxylase YP_923184.1 PFAM: beta-ketoacyl synthase; KEGG: sma:SAV5785 putative 3-oxoacyl-ACP synthase II YP_923185.1 PFAM: phosphopantetheine-binding; KEGG: sco:SCO2389 acyl carrier protein YP_923186.1 KEGG: sco:SCO2388 3-oxoacyl-[acyl-carrier-protein] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YP_923187.1 KEGG: tfu:Tfu_1973 acyl-carrier-protein S-malonyltransferase YP_923188.1 KEGG: sco:SCO2386 hypothetical protein YP_923189.1 PFAM: alpha/beta hydrolase fold; KEGG: fal:FRAAL6021 putative hydrolase YP_923190.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC YP_923191.1 KEGG: mmc:Mmcs_3360 hypothetical protein YP_923192.1 PFAM: AMP-dependent synthetase and ligase; KEGG: mmc:Mmcs_3758 AMP-dependent synthetase and ligase YP_923193.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sco:SCO2369 thiol-specific antioxidant protein YP_923194.1 PFAM: UspA domain protein; KEGG: mmc:Mmcs_1097 UspA YP_923195.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; PFAM: NAD-dependent epimerase/dehydratase; Male sterility C-terminal domain; KEGG: fal:FRAAL3759 putative fatty acyl coA reductase YP_923196.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rxy:Rxyl_2111 alcohol dehydrogenase, zinc-binding protein YP_923197.1 KEGG: rxy:Rxyl_2107 hypothetical protein YP_923198.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: fra:Francci3_2279 phospholipid/glycerol acyltransferase YP_923199.1 TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: lxx:Lxx21010 iron-dependent peroxidase YP_923200.1 PFAM: protein of unknown function DUF461; KEGG: mmc:Mmcs_1601 protein of unknown function DUF461 YP_923201.1 KEGG: sma:SAV899 hypothetical protein YP_923202.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: mmc:Mmcs_0015 serine/threonine protein kinase YP_923203.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sco:SCO2143 two component system response regulator YP_923204.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: tfu:Tfu_1329 ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal YP_923205.1 KEGG: osa:4332873 Os03g0357500 YP_923206.1 PFAM: AMP-dependent synthetase and ligase; KEGG: fra:Francci3_2165 AMP-dependent synthetase and ligase YP_923207.1 PFAM: nitrogen-fixing NifU domain protein; KEGG: lxx:Lxx21000 thioredoxin-like protein YP_923208.1 PFAM: GTP-binding protein, HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: pac:PPA1677 ferrous iron transport protein B YP_923209.1 PFAM: FeoA family protein; KEGG: lip:LI1082 Fe2+ transport system protein A YP_923210.1 PFAM: protein of unknown function DUF34; KEGG: rha:RHA1_ro01183 hypothetical protein YP_923211.1 PFAM: protein of unknown function DUF164; KEGG: fal:FRAAL2220 conserved hypothetical protein; putative coiled-coil domain YP_923212.1 PFAM: ribonuclease H; Phosphoglycerate mutase; KEGG: sma:SAV5877 hypothetical protein YP_923213.1 PFAM: protein of unknown function DUF328; KEGG: sco:SCO2297 hypothetical protein YP_923214.1 PFAM: ribonuclease II; KEGG: sma:SAV5880 ribonuclease R YP_923215.1 PFAM: phosphoribosyltransferase; dienelactone hydrolase; KEGG: mbo:Mb0586c hypothetical protein YP_923216.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rha:RHA1_ro07030 possible acyl-CoA synthetase YP_923217.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: fra:Francci3_1590 ABC transporter related YP_923218.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fra:Francci3_1591 binding-protein-dependent transport systems inner membrane component YP_923219.1 PFAM: extracellular solute-binding protein, family 1; KEGG: fra:Francci3_1592 extracellular solute-binding protein, family 1 YP_923220.1 KEGG: sil:SPO2120 amidinotransferase family protein YP_923221.1 KEGG: mbo:Mb2042 hypothetical protein YP_923222.1 KEGG: fra:Francci3_0955 conserved hypothetical protein YP_923223.1 KEGG: fal:FRAAL5813 hypothetical protein YP_923226.1 KEGG: cef:CE2619 putative transposase YP_923227.1 PFAM: Integrase, catalytic region; KEGG: mmc:Mmcs_5505 integrase, catalytic region YP_923228.1 PFAM: transposase IS3/IS911 family protein; KEGG: cef:CE2618 putative transposase YP_923229.1 KEGG: sco:SCO7806 DNA-binding protein YP_923230.1 PFAM: amino acid-binding ACT domain protein; malic enzyme domain protein; malic enzyme, NAD-binding; KEGG: rha:RHA1_ro00492 malate dehydrogenase (oxaloacetate-decarboxylating) YP_923231.1 KEGG: mbo:Mb2021c hypothetical protein YP_923233.1 KEGG: sma:SAV6236 hypothetical protein YP_923234.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: sco:SCO2266 methionine aminopeptidase YP_923236.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: cef:CE0204 putative transport protein YP_923237.1 PFAM: glucose sorbosone dehydrogenase; KEGG: rha:RHA1_ro05704 hypothetical protein YP_923238.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_923239.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mmc:Mmcs_4099 methyltransferase type 11 YP_923240.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_923242.1 PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp; KEGG: sco:SCO2241 probable glutamine synthetase YP_923243.1 PFAM: glutamine amidotransferase class-I; KEGG: sco:SCO0603 amino transferase YP_923244.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme YP_923246.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rha:RHA1_ro11203 response regulator, two-component system YP_923247.1 PFAM: regulatory protein, MarR; KEGG: rha:RHA1_ro01019 probable transcriptional regulator, MarR family YP_923248.1 PFAM: NADP oxidoreductase, coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: cgb:cg1421 putative dinucleotide-binding enzyme YP_923249.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nfa:nfa20320 hypothetical protein YP_923250.1 PFAM: phospholipase/Carboxylesterase; KEGG: nph:NP0926A hypothetical protein YP_923251.1 PFAM: Hydratase/decarboxylase; KEGG: mxa:MXAN_0925 putative 4-oxalocrotonate decarboxylase YP_923252.1 PFAM: cation efflux protein; KEGG: cgb:cg2271 Co/Zn/Cd efflux system component YP_923253.1 PFAM: polysaccharide deacetylase; KEGG: sco:SCO1129 secreted deacetylase YP_923254.1 PFAM: Monogalactosyldiacylglycerol synthase; KEGG: sco:SCO1126 hypothetical protein YP_923255.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: sco:SCO4133 integral membrane protein YP_923256.1 KEGG: fal:FRAAL3677 hypothetical protein; putative DedA family membrane protein YP_923257.1 KEGG: sma:SAV2242 hypothetical protein YP_923258.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: fra:Francci3_2401 two component transcriptional regulator, winged helix family YP_923259.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: gsu:GSU0452 sensor histidine kinase YP_923260.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: vpa:VP2408 hypothetical protein YP_923261.1 PFAM: glycosyl transferase, group 1; KEGG: rxy:Rxyl_2620 phosphatidyl-myo-inositol alpha-mannosyltransferase YP_923262.1 PFAM: LmbE family protein; KEGG: rha:RHA1_ro02076 possible LmbE-related protein YP_923263.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: sco:SCO3457 transmembrane protein YP_923264.1 KEGG: sco:SCO3456 putative secreted protein YP_923265.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cyb:CYB_0132 ABC transporter, permease protein YP_923266.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO3454 putative ABC-transporter membrane protein YP_923267.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: mmc:Mmcs_5124 ABC transporter related YP_923268.1 KEGG: sco:SCO3458 integral membrane protein YP_923269.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: sco:SCO3443 putative pyridine nucleotide-disulphide oxidoreductase YP_923270.1 PFAM: protein of unknown function DUF427; KEGG: dge:Dgeo_1745 protein of unknown function DUF427 YP_923271.1 PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: mpa:MAP2941c hypothetical protein YP_923272.1 PFAM: Redoxin domain protein; KEGG: mbo:Mb1704 probable conserved lipoprotein DsbF YP_923273.1 PFAM: glutaredoxin; KEGG: sco:SCO3442 hypothetical protein YP_923274.1 PFAM: isochorismatase hydrolase; KEGG: cps:CPS_1616 isochorismatase family protein YP_923275.1 PFAM: protein of unknown function DUF81; KEGG: hma:rrnAC2453 hypothetical protein YP_923276.1 KEGG: fra:Francci3_1889 glycoside hydrolase 15-related YP_923277.1 PFAM: DoxX family protein; KEGG: mxa:MXAN_6975 DoxX family protein YP_923278.1 KEGG: nfa:nfa13250 hypothetical protein YP_923279.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: rba:RB9569 probable Mip YP_923280.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: mtc:MT1714 transcriptional regulator, Crp/Fnr family YP_923281.1 PFAM: Patatin; KEGG: rha:RHA1_ro01898 possible lipid acyl hydrolase YP_923282.1 KEGG: sil:SPO2232 hypothetical protein YP_923283.1 PFAM: Radical SAM domain protein; KEGG: sco:SCO3462 hypothetical protein YP_923284.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: sco:SCO3460 putative mercuric dehydrogenase YP_923286.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sco:SCO3450 putative RNA polymerase sigma factor YP_923287.1 PFAM: transcriptional regulator domain protein; GAF domain protein; KEGG: sma:SAV7178 transcriptional regulator YP_923288.1 PFAM: aldehyde dehydrogenase; KEGG: sma:SAV7177 putative aldehyde dehydrogenase YP_923289.1 PFAM: protein of unknown function DUF1486; KEGG: mac:MA1575 hypothetical protein YP_923291.1 PFAM: aldehyde dehydrogenase; KEGG: nfa:nfa3930 putative aldehyde dehydrogenase YP_923293.1 PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; KEGG: abo:ABO_1174 GMC oxidoreductase family protein YP_923294.1 PFAM: regulatory protein, TetR; KEGG: nfa:nfa6460 putative transcriptional regulator YP_923296.1 KEGG: mag:amb3531 hypothetical protein YP_923297.1 PFAM: multicopper oxidase, type 3; KEGG: pac:PPA0092 hypothetical protein YP_923298.1 KEGG: pac:PPA0093 hypothetical membrane protein YP_923300.1 PFAM: OsmC family protein; KEGG: rxy:Rxyl_0142 OsmC-like protein YP_923301.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC YP_923302.1 PFAM: regulatory protein, ArsR; KEGG: rha:RHA1_ro08261 possible transcriptional regulator, MarR family YP_923303.1 PFAM: protein of unknown function DUF664; KEGG: sco:SCO2990 hypothetical protein YP_923304.1 PFAM: peptidase S15; X-Pro dipeptidyl-peptidase C-terminal domain protein; KEGG: nfa:nfa43000 putative esterase YP_923305.1 KEGG: sma:SAV6531 hypothetical protein YP_923306.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mmc:Mmcs_3016 ABC transporter related YP_923307.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bbr:BB1157 high-affinity branched-chain amino acid transport ATP-binding protein YP_923308.1 PFAM: inner-membrane translocator; KEGG: bxe:Bxe_A2754 ABC branched chain amino acid family transporter, inner membrane subunit YP_923309.1 PFAM: inner-membrane translocator; KEGG: mes:Meso_0478 inner-membrane translocator YP_923310.1 PFAM: Extracellular ligand-binding receptor; KEGG: tfu:Tfu_1779 hypothetical protein YP_923311.1 KEGG: mxa:MXAN_1131 hypothetical protein YP_923312.1 PFAM: DGPFAETKE family protein; KEGG: ade:Adeh_1007 DGPFAETKE domain-containing protein YP_923313.1 PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: mxa:MXAN_5731 RNA polymerase sigma-70 factor, ECF subfamily YP_923314.1 KEGG: nfa:nfa31490 hypothetical protein YP_923315.1 PFAM: ABC transporter related; KEGG: blo:BL1083 excinuclease ABC subunit A-like protein YP_923316.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rxy:Rxyl_1758 alcohol dehydrogenase, zinc-binding protein YP_923318.1 PFAM: protein of unknown function DUF1326; KEGG: rde:RD1_2286 hypothetical protein YP_923319.1 KEGG: bca:BCE_A0200 hypothetical protein YP_923320.1 PFAM: high-affinity nickel-transporter; KEGG: mpa:MAP2924 NicT YP_923321.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: rha:RHA1_ro01400 probable transposase YP_923322.1 KEGG: mmc:Mmcs_4295 integrase, catalytic region YP_923323.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: nfa:nfa10390 putative enoyl-CoA hydratase/isomerase family protein YP_923324.1 PFAM: cobalamin B12-binding domain protein; KEGG: hwa:HQ2301A methylmalonyl-CoA mutase, subunit B (cobalamin-binding subunit) YP_923325.1 KEGG: rpd:RPD_3222 phenylacetate--CoA ligase YP_923326.1 KEGG: pfu:PF1947 hypothetical protein; TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; SMART: AAA ATPase YP_923327.1 KEGG: pho:PH1306 563aa long hypothetical methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase YP_923328.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: mmc:Mmcs_4384 GntR-like protein YP_923329.1 PFAM: regulatory proteins, IclR; KEGG: rha:RHA1_ro02487 transcriptional regulator, IclR family YP_923330.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rha:RHA1_ro01381 possible ferredoxin--NAD(+) reductase YP_923331.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: sma:SAV6327 ferredoxin subunit of phenylpropionate dioxygenase YP_923332.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pfl:PFL_3855 cis-1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase YP_923333.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: fal:FRAAL6167 hypothetical protein; putative dioxygenase YP_923334.1 PFAM: class II aldolase/adducin family protein; KEGG: mlo:mlr6791 similar to adducins YP_923336.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_923337.1 PFAM: alpha/beta hydrolase fold; KEGG: rha:RHA1_ro04540 4,9-DSHA hydrolase YP_923338.1 KEGG: rpb:RPB_1061 protocatechuate 4,5-dioxygenase YP_923339.1 PFAM: regulatory protein, MarR; KEGG: mmc:Mmcs_5446 transcriptional regulator, MarR family YP_923340.1 PFAM: amidohydrolase 2; KEGG: rba:RB9860 hypothetical protein YP_923341.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tth:TTC0600 branched-chain amino acid transport ATP-binding protein livF YP_923342.1 PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: rpd:RPD_1891 ABC transporter related YP_923343.1 PFAM: inner-membrane translocator; KEGG: bbr:BB4292 branched-chain amino acid transport system permease YP_923344.1 PFAM: Extracellular ligand-binding receptor; KEGG: gsu:GSU1734 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative YP_923345.1 catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate YP_923346.1 catalyzes the formation of acetyl-CoA from acetalaldehyde YP_923347.1 PFAM: Hydratase/decarboxylase; KEGG: rha:RHA1_ro08085 2-oxopent-4-enoate hydratase YP_923348.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rha:RHA1_ro04549 transcriptional regulator, LysR family YP_923349.1 PFAM: transposase IS3/IS911 family protein; KEGG: mmc:Mmcs_3190 transposase IS3/IS911 YP_923350.1 PFAM: Integrase, catalytic region; KEGG: mmc:Mmcs_3191 integrase, catalytic region YP_923351.1 PFAM: FAD linked oxidase domain protein; KEGG: rha:RHA1_ro03236 probable D-lactate dehydrogenase (cytochrome) YP_923352.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rha:RHA1_ro02936 probable formyl-CoA transferase YP_923353.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_923354.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: nph:NP6182A predicted crotonobetainyl-CoA:carnitine CoA-transferase/alpha-methylacyl-CoA racemase 1 YP_923355.1 PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: rpb:RPB_2122 3-hydroxyisobutyrate dehydrogenase YP_923356.1 PFAM: aldehyde dehydrogenase; KEGG: rha:RHA1_ro05333 aldehyde dehydrogenase YP_923358.1 PFAM: cytochrome P450; KEGG: rha:RHA1_ro04669 cytochrome P450 CYP123 YP_923359.1 PFAM: MMPL domain protein; KEGG: mmc:Mmcs_3114 transport protein YP_923360.1 PFAM: regulatory protein, TetR; KEGG: sco:SCO3833 transcriptional regulator YP_923361.1 PFAM: thioesterase superfamily protein; KEGG: nfa:pnf2350 hypothetical protein YP_923362.1 KEGG: mmc:Mmcs_3184 hypothetical protein YP_923363.1 KEGG: mmc:Mmcs_3184 hypothetical protein YP_923364.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV5831 multidrug-efflux transporter YP_923366.1 PFAM: regulatory protein, MarR; KEGG: sco:SCO4961 MarR-family transcriptional regulator YP_923367.1 PFAM: MMPL domain protein; KEGG: mmc:Mmcs_5142 MmpL YP_923368.1 PFAM: regulatory protein, TetR; KEGG: rha:RHA1_ro04167 possible transcriptional regulator YP_923369.1 PFAM: regulatory protein, MarR; KEGG: tfu:Tfu_0351 helix-turn-helix, fis-type YP_923370.1 KEGG: fal:FRAAL0176 putative membrane transport protein YP_923371.1 PFAM: helix-turn-helix domain protein; KEGG: rha:RHA1_ro11274 possible repressor protein, helix-turn-helix family YP_923372.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sma:SAV703 acetyltransferase YP_923373.1 PFAM: phage integrase family protein; KEGG: pfo:Pfl_1025 tyrosine recombinase XerD YP_923374.1 PFAM: GCN5-related N-acetyltransferase; KEGG: fra:Francci3_1395 GCN5-related N-acetyltransferase YP_923375.1 KEGG: sco:SCO0502 hypothetical protein YP_923376.1 PFAM: NmrA family protein; KEGG: lxx:Lxx16700 hypothetical protein YP_923377.1 PFAM: NmrA family protein; KEGG: ret:RHE_PC00048 hypothetical protein YP_923378.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: fra:Francci3_4105 alcohol dehydrogenase, zinc-binding YP_923379.1 KEGG: sco:SCO4433 integral membrane protein YP_923380.1 PFAM: luciferase family protein; KEGG: bld:BLi00644 hypothetical protein YP_923381.1 PFAM: regulatory protein, TetR; KEGG: fal:FRAAL3510 putative TetR-family transcriptional regulator (partial match) YP_923382.1 KEGG: fal:FRAAL6463 hypothetical protein YP_923384.1 PFAM: RelA/SpoT domain protein; KEGG: lxx:Lxx23800 hypothetical protein YP_923385.1 PFAM: 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: ret:RHE_PC00048 hypothetical protein YP_923386.1 KEGG: sco:SCO5075 oxidoreductase YP_923387.1 PFAM: DoxX family protein; KEGG: nfa:nfa22160 hypothetical protein YP_923388.1 PFAM: regulatory protein, TetR; KEGG: fal:FRAAL3510 putative TetR-family transcriptional regulator (partial match) YP_923389.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rxy:Rxyl_0122 methyltransferase type 11 YP_923391.1 PFAM: alkylmercury lyase; KEGG: nfa:pnf2590 putative alkylmercury lyase YP_923392.1 PFAM: regulatory protein, MerR; KEGG: nfa:pnf2580 putative transcriptional regulator YP_923393.1 PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: tfu:Tfu_2703 putative cytochrome c biogenesis membrane protein YP_923394.1 PFAM: cytochrome c assembly protein; KEGG: fra:Francci3_0513 cytochrome c assembly protein YP_923395.1 PFAM: ResB family protein; KEGG: sma:SAV4800 putative cytochrome c biogenesis membrane protein YP_923396.1 PFAM: Redoxin domain protein; KEGG: tfu:Tfu_2704 hypothetical protein YP_923397.1 PFAM: Redoxin domain protein; Thioredoxin domain; KEGG: ttj:TTHA1728 cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE YP_923398.1 TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: tfu:Tfu_1762 apolipoprotein N-acyltransferase YP_923399.1 PFAM: cadmium resistance transporter; KEGG: nfa:pnf1360 putative transporter YP_923400.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_923401.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: nfa:pnf1330 putative cation-transporting ATPase YP_923402.1 KEGG: nfa:pnf1320 putative transcriptional regulator YP_923403.1 PFAM: regulatory protein, ArsR; KEGG: nfa:pnf1320 putative transcriptional regulator YP_923404.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: shm:Shewmr7_2345 methyltransferase type 11 YP_923405.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV4541 putative ABC transporter ATP-binding protein YP_923406.1 KEGG: rha:RHA1_ro02954 possible ABC antibiotics transporter YP_923407.1 PFAM: protein of unknown function DUF305; KEGG: ana:all7633 hypothetical protein YP_923408.1 KEGG: pfl:PFL_2399 hypothetical protein YP_923409.1 PFAM: regulatory protein, ArsR; KEGG: nfa:nfa26300 putative transcriptional regulator YP_923410.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: nfa:nfa52310 putative cation transporter YP_923412.1 PFAM: helix-turn-helix domain protein; KEGG: rha:RHA1_ro08679 possible repressor protein YP_923413.1 PFAM: SAF domain; KEGG: rha:RHA1_ro10043 hypothetical protein YP_923414.1 KEGG: sma:SAV184 hypothetical protein YP_923415.1 PFAM: type II secretion system protein E; KEGG: rha:RHA1_ro10045 possible type II/IV secretion system protein YP_923416.1 PFAM: type II secretion system protein; KEGG: sma:SAV186 integral membrane protein YP_923417.1 PFAM: type II secretion system protein; KEGG: rha:RHA1_ro10047 hypothetical protein YP_923419.1 PFAM: TadE family protein; KEGG: sco:SCP1.173 hypothetical protein YP_923420.1 PFAM: TadE family protein; KEGG: sma:SAV190 hypothetical protein YP_923421.1 PFAM: TadE family protein; KEGG: sco:SCP1.175 hypothetical protein YP_923422.1 PFAM: Peptidoglycan-binding LysM; KEGG: sco:SCP1.176 putative large membrane protein YP_923425.1 KEGG: sco:SCP1.166 putative atp/gtp-binding protein YP_923428.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: rha:RHA1_ro01400 probable transposase YP_923433.1 KEGG: sco:SCO6881 ATP-binding protein YP_923434.1 KEGG: sco:SCO6880 lipoprotein YP_923435.1 KEGG: sco:SCO6878 ATP-binding protein YP_923436.1 PFAM: peptidase M23B; KEGG: lxx:Lxx15390 lipoprotein YP_923438.1 KEGG: fra:Francci3_2361 putative membrane protein YP_923441.1 PFAM: peptidase M48, Ste24p; KEGG: rfr:Rfer_1411 STE24 endopeptidase YP_923442.1 PFAM: TOPRIM domain protein; DNA primase catalytic core, N-terminal domain; SMART: Toprim sub domain protein; KEGG: mmc:Mmcs_1430 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member-like protein YP_923450.1 KEGG: sco:SCP1.352 hypothetical protein YP_923451.1 PFAM: ParB domain protein nuclease; KEGG: rha:RHA1_ro03182 possible chromosome partitioning protein-like protein YP_923454.1 PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: mle:ML2684 single strand binding protein YP_923456.1 PFAM: phage integrase family protein; KEGG: rha:RHA1_ro10276 possible DNA integrase/recombinase YP_923457.1 PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: fra:Francci3_3532 phage integrase YP_923458.1 KEGG: tfu:Tfu_2217 hypothetical protein YP_923460.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: sma:SAV2631 putative DNA processing Smf-family protein YP_923463.1 PFAM: ATP dependent DNA ligase; KEGG: sma:SAP1p90 putative ATP-dependint DNA ligase YP_923468.1 KEGG: sma:SAV5827 secreted protein YP_923470.1 PFAM: sigma-70 region 4 domain protein; KEGG: sme:SMc03873 putative RNA polymerase sigma factor protein YP_923472.1 PFAM: helicase domain protein; type III restriction enzyme, res subunit; restriction endonuclease; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sus:Acid_1698 type III restriction enzyme, res subunit YP_923473.1 KEGG: sus:Acid_1699 zinc finger, RanBP2-type YP_923475.1 PFAM: DNA mismatch endonuclease vsr; KEGG: hch:HCH_10021 DNA G:T-mismatch repair endonuclease YP_923476.1 KEGG: ngo:NGO1209 DNA cytosine methyltransferase M.NgoMIII; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase YP_923480.1 KEGG: nfa:nfa9160 hypothetical protein YP_923483.1 KEGG: lxx:Lxx13850 hypothetical protein YP_923485.1 PFAM: phage integrase family protein; KEGG: sco:SCO5633 traSA:integrase fusion protein YP_923486.1 KEGG: fra:Francci3_3400 excisionase/Xis, DNA-binding YP_923487.1 KEGG: pac:PPA0671 glutamine synthetase; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp YP_923488.1 PFAM: RDD domain containing protein; KEGG: pac:PPA0672 hypothetical protein YP_923490.1 KEGG: pac:PPA0683 hypothetical protein YP_923491.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_923492.1 TIGRFAM: lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; KEGG: rha:RHA1_ro01153 probable lipoyltransferase YP_923494.1 PFAM: dihydrodipicolinate reductase; NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; KEGG: nfa:nfa16890 putative epimerase YP_923495.1 PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: rha:RHA1_ro01151 probable dihydrolipoyllysine-residue succinyltransferase YP_923496.1 E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_923497.1 KEGG: mmc:Mmcs_3312 hypothetical protein YP_923498.1 PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: sco:SCO2179 putative aminopeptidase YP_923499.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein YP_923500.1 KEGG: sco:SCO2172 hypothetical protein YP_923502.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: pst:PSPTO_2623 phenazine biosynthesis protein, PhzF family YP_923503.1 PFAM: thymidylate synthase; KEGG: csa:Csal_2572 thymidylate synthase YP_923504.1 PFAM: dihydrofolate reductase region; KEGG: tbd:Tbd_2039 dihydrofolate reductase YP_923505.1 PFAM: luciferase family protein; KEGG: rha:RHA1_ro04019 probable alkanesulfonate monooxygenase YP_923506.1 KEGG: tfu:Tfu_3023 similar to flavodoxin YP_923507.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_923508.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: sco:SCO5745 hypothetical protein YP_923509.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: pac:PPA1356 FtsK/SpoIIIE protein YP_923510.1 KEGG: sma:SAV2509 hypothetical protein YP_923511.1 KEGG: sma:SAV2508 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme YliG; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004-like; SMART: Elongator protein 3/MiaB/NifB YP_923512.1 TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: pac:PPA1007 phosphatidylglycerophosphate synthase YP_923513.1 PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: cgb:cg0397 probable 5'-nucleotidase precursor YP_923514.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: cjk:jk1043 putative extracellular nuclease YP_923515.1 PFAM: glycoside hydrolase 15-related; KEGG: lxx:Lxx13300 hypothetical protein YP_923516.1 PFAM: CinA domain protein; KEGG: fal:FRAAL5732 competence-inducible (CinA-like) protein YP_923517.1 PFAM: helix-turn-helix domain protein; KEGG: tfu:Tfu_0798 helix-turn-helix motif YP_923520.1 PFAM: Formamidopyrimidine-DNA glycolase; KEGG: mpa:MAP3416 probable endonuclease VIII YP_923521.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicases-like; KEGG: fra:Francci3_3527 DEAD/DEAH box helicase-like YP_923523.1 KEGG: nfa:nfa50720 hypothetical protein YP_923524.1 PFAM: regulatory protein, TetR; KEGG: rha:RHA1_ro06052 possible transcriptional regulator YP_923525.1 KEGG: sma:SAV5428 hypothetical protein YP_923526.1 PFAM: protein of unknown function DUF1006; KEGG: mlo:mlr1373 hypothetical protein YP_923527.1 PFAM: Endoribonuclease L-PSP; KEGG: fra:Francci3_4440 endoribonuclease L-PSP YP_923528.1 KEGG: rha:RHA1_ro05054 hypothetical protein YP_923529.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rha:RHA1_ro01206 hypothetical protein YP_923530.1 KEGG: sma:SAV2495 hypothetical protein YP_923531.1 PFAM: major facilitator superfamily MFS_1; KEGG: nfa:nfa33380 putative transporter YP_923532.1 KEGG: rha:RHA1_ro04261 probable S-methyl-5-thioadenosine phosphorylase; TIGRFAM: methylthioadenosine phosphorylase; PFAM: purine phosphorylase, family 2 YP_923533.1 KEGG: fra:Francci3_3525 RecA protein; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase YP_923534.1 PFAM: regulatory protein RecX; KEGG: sma:SAV2491 putative RecX protein YP_923535.1 PFAM: phosphoribosyltransferase; KEGG: cgb:cg1659 purine phosphoribosyltransferase YP_923536.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sth:STH2617 aminoglycoside 6'-N-acetyltransferase YP_923537.1 PFAM: protein of unknown function DUF344; KEGG: mmc:Mmcs_0639 protein of unknown function DUF344 YP_923538.1 KEGG: rxy:Rxyl_2213 hypothetical protein YP_923539.1 KEGG: sco:SCO1348 hypothetical protein YP_923540.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: sco:SCO6093 secreted protein YP_923541.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite YP_923542.1 KEGG: sma:SAV2128 hypothetical protein YP_923543.1 PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: sco:SCO6102 putative nitrite/sulphite reductase YP_923544.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_923545.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: sma:SAV2123 putative acyl-CoA dehydrogenase YP_923546.1 PFAM: ribonuclease BN; KEGG: sma:SAV2122 integral membrane protein, ribonuclease BN-like family YP_923547.1 PFAM: TrkA-N domain protein; Ion transport 2 domain protein,; KEGG: pac:PPA1165 ion channel membrane protein YP_923548.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: dra:DR2419 sensory box sensor histidine kinase YP_923550.1 unknown function YP_923551.1 PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; KEGG: rfr:Rfer_2185 thiamine pyrophosphate enzyme-like TPP-binding YP_923552.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: rfr:Rfer_2186 pyruvate flavodoxin/ferredoxin oxidoreductase-like YP_923553.1 TIGRFAM: pyruvate/ketoisovalerate oxidoreductase, gamma subunit; PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: rfr:Rfer_2187 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate YP_923554.1 KEGG: rha:RHA1_ro08278 hypothetical protein YP_923555.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: mmc:Mmcs_3405 alcohol dehydrogenase GroES-like protein YP_923556.1 PFAM: helix-turn-helix domain protein; KEGG: plu:plu2127 hypothetical protein YP_923557.1 PFAM: HipA domain protein; KEGG: noc:Noca_2931 hypothetical protein YP_923558.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: rha:RHA1_ro01400 probable transposase YP_923559.1 PFAM: aminotransferase, class IV; KEGG: sco:SCO1546 putative aminotransferase YP_923560.1 PFAM: sporulation and cell division protein SsgA; KEGG: fra:Francci3_1359 sporulation and cell division protein SsgA YP_923562.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_923563.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ccr:CC0816 acetyltransferase, GNAT family YP_923564.1 PFAM: histidine triad (HIT) protein; KEGG: nfa:nfa37110 hypothetical protein YP_923565.1 PFAM: inositol monophosphatase; KEGG: cef:CE0810 hypothetical protein YP_923566.1 KEGG: rha:RHA1_ro07061 hypothetical protein YP_923567.1 catalyzes the interconversion of D-xylose to D-xylulose YP_923568.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sma:SAV2247 putative periplasmic solute-binding protein YP_923569.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO6010 probable ABC-transport system ATP binding protein YP_923570.1 PFAM: inner-membrane translocator; KEGG: tfu:Tfu_1920 putative ABC transporter transmembrane transport protein YP_923571.1 PFAM: ROK family protein; KEGG: sma:SAV7180 xylose repressor, ROK-family transcriptional regulator YP_923572.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: sma:SAV6826 putative membrane transferase YP_923573.1 with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate YP_923574.1 PFAM: SNO glutamine amidotransferase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: tfu:Tfu_2097 putative glutamine amidotransferase YP_923575.1 PFAM: protein of unknown function DUF28; KEGG: sco:SCO1521 hypothetical protein YP_923576.1 KEGG: rha:RHA1_ro05202 hypothetical protein YP_923577.1 TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; KEGG: sma:SAV6833 putative Holliday junction nuclease YP_923578.1 PFAM: RuvA domain protein; DNA recombination protein RuvA, domain I; SMART: Helix-hairpin-helix DNA-binding, class 1; KEGG: sco:SCO1519 holliday junction DNA helicase YP_923579.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_923580.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: ccr:CC1992 preprotein translocase, YajC subunit YP_923581.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_923582.1 TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: sma:SAV6838 putative protein-export membrane protein YP_923583.1 KEGG: tfu:Tfu_2091 adenine phosphoribosyltransferase; TIGRFAM: adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_923584.1 KEGG: sma:SAV6840 putative ppGpp synthetase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region YP_923585.1 KEGG: rno:84352 procollagen, type I, alpha 2 YP_923586.1 PFAM: protein of unknown function DUF349; KEGG: pac:PPA1167 putative ATPase involved in DNA repair YP_923587.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap; KEGG: osa:4326135 Os01g0110200 YP_923588.1 PFAM: beta-lactamase domain protein; KEGG: sco:SCO1509 hydrolase YP_923589.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_923590.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_923591.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO5476 oligopeptide transport integral membrane protein YP_923592.1 PFAM: extracellular solute-binding protein, family 5; KEGG: sma:SAV3151 ABC transporter protein BldKB YP_923593.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV3152 putative ABC transporter membrane protein BldKC YP_923594.1 KEGG: sma:SAV2766 putative ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase YP_923595.1 KEGG: sco:SCO5116 putative peptide transport system ATP-binding subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase YP_923596.1 PFAM: magnesium chelatase, ChlI subunit; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: sco:SCO1506 conserved ATP/GTP binding protein YP_923599.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_923600.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function YP_923601.1 PFAM: aminodeoxychorismate lyase; KEGG: fal:FRAAL5250 hypothetical integral membrane protein YP_923602.1 PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding, N-terminal domain protein; KEGG: sma:SAV6853 putative shikimate 5-dehydrogenase YP_923603.1 PFAM: peptidase A24A, prepilin type IV; KEGG: sco:SCO4549 putative type IV peptidase YP_923604.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_923605.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis YP_923606.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_923607.1 PFAM: dehydroquinase, class II; KEGG: pac:PPA1686 3-dehydroquinate dehydratase YP_923608.1 PFAM: protein of unknown function DUF541; KEGG: bmb:BruAb1_1470 Omp28, immunoreactive 28 kDa outer membrane protein YP_923609.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_923610.1 TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: tfu:Tfu_1094 NusB antitermination factor YP_923611.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: sco:SCO3443 putative pyridine nucleotide-disulphide oxidoreductase YP_923612.1 PFAM: protein of unknown function DUF1206; KEGG: fal:FRAAL1885 putative integral membrane protein YP_923613.1 KEGG: fal:FRAAL6717 conserved hypothetical protein; putative signal peptide YP_923614.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: mmc:Mmcs_2351 alcohol dehydrogenase, zinc-binding protein YP_923615.1 TIGRFAM: arginine/ornithine antiporter; PFAM: amino acid permease-associated region; KEGG: hch:HCH_05491 amino acid transporters YP_923616.1 catalyzes the degradation of arginine to citruline and ammonia YP_923617.1 TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; KEGG: pfl:PFL_4636 ornithine carbamoyltransferase YP_923618.2 reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP YP_923619.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity YP_923620.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_923621.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis YP_923622.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_923623.1 TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain, oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; RimK domain protein ATP-grasp; KEGG: sco:SCO1483 carbamoylphosphate synthetase large chain YP_923624.1 PFAM: dihydroorotate dehydrogenase; KEGG: tfu:Tfu_0927 dihydroorotate dehydrogenase YP_923625.1 TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: sma:SAV6869 putative orotidine 5'-phosphate decarboxylase YP_923627.1 KEGG: sma:SAV6870 hypothetical protein YP_923628.1 KEGG: lxx:Lxx11120 guanylate kinase; PFAM: guanylate kinase; SMART: guanylate kinase/L-type calcium channel region YP_923629.1 TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; KEGG: sma:SAV6872 putative RNA polymerase omega subunit YP_923630.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine YP_923631.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_923632.1 KEGG: tfu:Tfu_1073 primosomal protein N' (replication factor Y) (superfamily II helicase) YP_923633.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_923634.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth YP_923635.1 PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: sco:SCO1472 conserved hypothetical Sun-family protein SCL6.29c YP_923636.1 KEGG: rha:RHA1_ro05237 possible DNA ligase (ATP), C-terminal YP_923637.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate YP_923638.1 KEGG: pac:PPA1752 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein YP_923639.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_923640.1 PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: tfu:Tfu_1080 3,4-dihydroxy-2-butanone 4-phosphate synthase:GTP cyclohydrolase II YP_923641.1 PFAM: 6,7-dimethyl-8-ribityllumazine synthase; KEGG: sma:SAV6905 putative riboflavin synthase beta subunit YP_923642.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis YP_923643.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors YP_923644.1 KEGG: tfu:Tfu_1082 hypothetical protein YP_923645.1 PFAM: Aldose 1-epimerase; KEGG: fal:FRAAL2426 putative aldose-1-epimerase YP_923646.1 KEGG: fal:FRAAL4224 hypothetical protein YP_923647.1 KEGG: sma:SAV6730 hypothetical protein YP_923648.1 KEGG: tfu:Tfu_1823 hypothetical protein YP_923649.1 KEGG: sco:SCO1602 hypothetical protein YP_923650.1 TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: pac:PPA1414 translation initiation factor IF-3 YP_923651.1 PFAM: ribosomal protein L35; KEGG: sma:SAV6738 putative ribosomal protein L35 YP_923652.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_923653.1 PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; KEGG: sma:SAV6740 putative rRNA methylase YP_923654.1 PFAM: glycoside hydrolase, family 31; KEGG: rxy:Rxyl_2586 glycoside hydrolase, family 31 YP_923655.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: sco:SCO1596 two-component sensor YP_923656.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_923657.1 TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; KEGG: sma:SAV6743 putative phenylalanyl-tRNA synthetase beta subunit YP_923658.1 PFAM: protein of unknown function DUF1503; KEGG: tfu:Tfu_2998 hypothetical protein YP_923659.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate YP_923660.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate YP_923661.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_923662.1 TIGRFAM: acetylornithine and succinylornithine aminotransferases; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class-III; KEGG: nfa:nfa19390 putative acetylornithine aminotransferase YP_923663.1 TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; KEGG: lxx:Lxx06070 ornithine carbamoyltransferase YP_923664.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes YP_923665.1 catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis YP_923666.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_923667.1 responsible for recognizing base lesions in the genome and initiating base excision DNA repair YP_923668.1 PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: tfu:Tfu_2039 hypothetical protein YP_923669.1 KEGG: sco:SCO1789 hypothetical protein YP_923670.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sma:SAV6490 hydrolase YP_923671.1 TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; KEGG: sco:SCO1782 putative membrane protein YP_923672.1 catalyzes the phosphorylation of NAD to NADP YP_923673.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: sma:SAV6499 putative recombination and DNA repair protein YP_923674.1 KEGG: rha:RHA1_ro00933 hypothetical protein YP_923675.1 KEGG: nfa:nfa20040 hypothetical protein YP_923676.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_923677.1 PFAM: NUDIX hydrolase; KEGG: tfu:Tfu_1200 conserved hypothetical protein YP_923678.1 KEGG: tcx:Tcr_0373 hypothetical protein YP_923679.1 TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; KEGG: sma:SAV6507 putative L-alanine dehydrogenase YP_923680.1 TIGRFAM: tyrosine recombinase XerD; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: nfa:nfa20070 putative recombinase YP_923681.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: nfa:nfa37840 putative helicase YP_923682.1 PFAM: glycoside hydrolase, family 26; KEGG: bfs:BF0771 putative mannosidase YP_923683.1 KEGG: pac:PPA0096 hypothetical protein YP_923684.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: sma:SAV6508 partitioning or sporulation protein YP_923685.1 KEGG: sma:SAV6509 hypothetical protein YP_923686.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: sma:SAV6510 putative segregation and condensation protein A YP_923687.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: sma:SAV6511 segregation and condensation protein B YP_923688.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pac:PPA1385 ribosomal large subunit pseudouridine synthase B YP_923689.1 PFAM: Mycobacterium tuberculosis paralogous family 11; KEGG: mpa:MAP2474c hypothetical protein YP_923690.1 TIGRFAM: chorismate mutase; PFAM: Chorismate mutase of the AroH class; KEGG: sma:SAV6520 putative chorismate mutase YP_923691.1 PFAM: amino acid-binding ACT domain protein; Prephenate dehydrogenase; KEGG: lxx:Lxx05720 prephenate dehydrogenase YP_923692.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP YP_923693.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: sco:SCO1759 transferase YP_923694.1 synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_923695.1 PFAM: protein of unknown function DUF124; KEGG: rxy:Rxyl_3200 protein of unknown function DUF124 YP_923696.1 KEGG: mmu:233210 proline rich 12 YP_923697.1 PFAM: protein of unknown function DUF81; KEGG: rxy:Rxyl_0506 protein of unknown function DUF81 YP_923698.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: nar:Saro_2963 short-chain dehydrogenase/reductase SDR YP_923699.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro04763 short-chain dehydrogenase YP_923700.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation YP_923701.1 PFAM: cobalbumin biosynthesis enzyme; KEGG: mbo:Mb0260c putative bifunctional cobalamin biosynthesis protein CobU: cobinamide kinase + cobinamide phosphate guanylyltransferase YP_923702.1 PFAM: cobalamin-5-phosphate synthase CobS; KEGG: tfu:Tfu_0996 putative cobalamin (5'-phosphate) synthase : adenosylcobinamide-GDP ribazoletransferase YP_923703.1 PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; KEGG: mpa:MAP1948 putative nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase YP_923704.1 KEGG: cgb:cg0382 adenylate kinase or related kinase YP_923705.1 KEGG: pac:PPA2016 conserved protein (putative spermidine synthase) YP_923706.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: mtc:MT3905 IS1557, transposase YP_923707.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rha:RHA1_ro04692 acyl-CoA dehydrogenase YP_923708.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rha:RHA1_ro04693 acyl-CoA dehydrogenase YP_923709.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: rha:RHA1_ro04538 ketosteroid-9-alpha-hydroxylase, oxygenase YP_923710.1 KEGG: mmc:Mmcs_4641 hypothetical protein YP_923711.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: nfa:nfa50680 putative oxidoreductase YP_923713.1 PFAM: beta-lactamase domain protein; KEGG: fra:Francci3_1630 beta-lactamase-like YP_923714.1 KEGG: sco:SCO1959 hypothetical protein YP_923715.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate YP_923716.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: sco:SCO1356 iron sulphur protein (secreted protein) YP_923717.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_923718.1 PFAM: Uncharacterised P-loop ATPase protein UPF0042; KEGG: fal:FRAAL4592 putative kinase YP_923719.1 PFAM: protein of unknown function UPF0052 and CofD; KEGG: tfu:Tfu_2019 conserved hypothetical protein CofD related YP_923720.1 PFAM: protein of unknown function DUF199; KEGG: sma:SAV6294 sporulation regulatory protein YP_923721.1 KEGG: cdi:DIP1310 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_923722.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_923723.1 PFAM: triosephosphate isomerase; KEGG: sco:SCO1945 triosephosphate isomerase YP_923724.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: sco:SCO1944 protein-export membrane protein secG YP_923725.1 KEGG: pac:PPA0820 electron transport protein YP_923726.1 KEGG: mpa:MAP2795 hypothetical protein YP_923727.1 TIGRFAM: 6-phosphogluconolactonase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: sco:SCO1939 putative 6-phosphogluconolactonase YP_923728.1 KEGG: sma:SAV6312 oxppcycle protein YP_923729.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_923730.1 PFAM: phosphoglucose isomerase (PGI); KEGG: lxx:Lxx11600 glucose-6-phosphate isomerase YP_923731.1 catalyzes the reversible formation of D-erythrose 4-phosphate and D-fructose 6-phosphate from sedoheptulose 7-phosphate and D-glyceraldehyde 3-phosphate YP_923732.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_923733.1 converts protoheme IX and farnesyl diphosphate to heme O YP_923734.1 PFAM: cytochrome oxidase assembly; KEGG: fra:Francci3_1653 cytochrome oxidase assembly YP_923735.1 PFAM: ABC-2 type transporter; KEGG: sco:SCO1929 putative integral membrane transport protein YP_923736.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO1928 putative ABC transporter, ATP-binding subunit YP_923737.1 KEGG: sil:SPO0301 glycerophosphoryl diester phosphodiesterase family protein YP_923738.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: fal:FRAAL0765 putative RNA-binding protein YP_923739.1 KEGG: rxy:Rxyl_1180 hypothetical protein YP_923740.1 PFAM: HMG-I and HMG-Y, DNA-binding domain protein; regulatory protein, ArsR; Helix-turn-helix, type 11 domain protein; KEGG: sma:SAV6324 DNA-binding protein YP_923741.1 TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: sco:SCO1925 hypothetical protein YP_923742.1 TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: sco:SCO1924 hypothetical protein YP_923743.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: sco:SCO1923 putative dioxygenase ferredoxin subunit YP_923744.1 KEGG: pac:PPA1546 ABC transporter ATP-binding protein; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase YP_923745.1 TIGRFAM: cysteine desulfurases, SufS subfamily; PFAM: aminotransferase, class V; KEGG: sma:SAV6329 putative cysteine desulfurase YP_923746.1 TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: fra:Francci3_1665 SUF system FeS assembly protein YP_923747.1 PFAM: protein of unknown function DUF59; KEGG: fra:Francci3_1666 protein of unknown function DUF59 YP_923749.1 PFAM: transcriptional regulator TrmB; KEGG: sco:SCO3632 hypothetical protein YP_923750.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV4541 putative ABC transporter ATP-binding protein YP_923751.1 KEGG: nfa:nfa24760 putative ABC transporter YP_923753.1 PFAM: protein of unknown function, zinc metallopeptidase putative; KEGG: mmc:Mmcs_2304 protein of unknown function, zinc metallopeptidase putative YP_923754.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV6426 ABC transporter ATP-binding protein YP_923755.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: sco:SCO1838 enoyl-CoA hydratase/isomerase YP_923756.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: fra:Francci3_1676 ABC transporter related YP_923757.1 KEGG: pac:PPA1535 conserved membrane spanning protein YP_923758.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z YP_923759.1 KEGG: sma:SAV6456 hypothetical protein YP_923760.1 KEGG: fra:Francci3_1908 hypothetical protein YP_923761.1 PFAM: protein of unknown function DUF1458; KEGG: sco:SCO0915 hypothetical protein YP_923762.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: lxx:Lxx11740 3-oxoacyl-[acyl-carrier protein] reductase YP_923763.1 Catalyzes a key regulatory step in fatty acid biosynthesis YP_923764.1 PFAM: Phosphoglycerate mutase; KEGG: tfu:Tfu_0135 hypothetical protein YP_923765.1 KEGG: sco:SCO1808 putative phosphoserine phosphatase; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: amino acid-binding ACT domain protein; Haloacid dehalogenase domain protein hydrolase; Haloacid dehalogenase domain protein hydrolase, type 3 YP_923766.1 KEGG: sma:SAV6479 hypothetical protein YP_923767.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nfa:nfa42910 putative ABC transporter ATP-binding protein YP_923768.1 PFAM: protein of unknown function DUF107; KEGG: tfu:Tfu_2226 putative integral membrane protein YP_923769.1 PFAM: band 7 protein; KEGG: sma:SAV6482 secreted protein YP_923770.1 PFAM: protein of unknown function DUF81; KEGG: nfa:nfa3090 hypothetical protein YP_923772.1 PFAM: nitroreductase; KEGG: fal:FRAAL2433 putative NADH dehydrogenase (H(2)O(2) forming NADH oxidase) (NADH:oxygen oxidoreductase) YP_923773.1 KEGG: rha:RHA1_ro06611 hypothetical protein YP_923774.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: cya:CYA_0909 glycerophosphoryl diester phosphodiesterase family protein YP_923775.1 PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: mle:ML1573 possible amidotransferase YP_923776.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sma:SAV6727 short chain dehydrogenase YP_923777.1 PFAM: aldehyde dehydrogenase; KEGG: mmc:Mmcs_2059 betaine-aldehyde dehydrogenase YP_923778.1 PFAM: glutamine synthetase, catalytic region; KEGG: rxy:Rxyl_3196 glutamate--ammonia ligase YP_923779.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; Helix-turn-helix, type 11 domain protein; KEGG: sma:SAV6724 GntR-family transcriptional regulator YP_923780.1 PFAM: amino acid permease-associated region; KEGG: sco:SCO4097 amino acid/metabolite permease YP_923781.1 PFAM: Choline/ethanolamine kinase; aminoglycoside phosphotransferase; KEGG: mlo:mll5367 hypothetical protein YP_923782.1 PFAM: FAD dependent oxidoreductase; glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein, C-terminal barrel; KEGG: bxe:Bxe_B1666 dehydrogenase YP_923783.1 KEGG: mmc:Mmcs_4977 hypothetical protein YP_923784.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: gsu:GSU0574 hypothetical protein YP_923785.1 KEGG: cel:C18H7.3 Collagen protein 102 YP_923786.1 PFAM: peptidase C60, sortase A and B; KEGG: sco:SCO2841 secreted protein YP_923787.1 KEGG: cef:CE1098 hypothetical protein YP_923788.1 PFAM: luciferase family protein; KEGG: sma:SAV4763 monooxygenase YP_923789.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: sma:SAV4764 putative NAD(P)H-dependent FMN reductase YP_923790.1 PFAM: PEBP family protein; KEGG: tfu:Tfu_2116 YbhB and YbcL YP_923791.1 TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: sma:SAV6796 uroporphyrin-III C-methyltransferase / precorrin-2 oxidase / ferrochelatase YP_923792.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: tfu:Tfu_2264 putative rRNA methylase YP_923793.1 KEGG: pac:PPA1525 polypeptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase YP_923794.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rha:RHA1_ro06400 butyryl-CoA dehydrogenase YP_923795.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pau:PA14_66040 putative acyl-CoA dehydrogenase YP_923796.1 KEGG: hch:HCH_05781 hypothetical protein YP_923797.1 KEGG: rha:RHA1_ro05489 hypothetical protein YP_923798.1 TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase, C terminal domain protein; KEGG: rha:RHA1_ro05490 galactokinase YP_923799.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_923800.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: mmc:Mmcs_1356 choline/carnitine/betaine transport YP_923801.1 PFAM: LysR, substrate-binding; KEGG: rha:RHA1_ro06801 possible transcriptional regulator, LysR family YP_923802.1 PFAM: Oxidoreductase FAD-binding domain protein; KEGG: sco:SCO7059 oxidoreductase YP_923804.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: pac:PPA2190 membrane-associated protein YP_923805.1 PFAM: CHAP domain containing protein; KEGG: cch:Cag_1920 hypothetical protein YP_923806.1 activates fatty acids by binding to coenzyme A YP_923807.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sal:Sala_2035 hypothetical protein YP_923808.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rha:RHA1_ro03747 probable long-chain-fatty-acid--CoA ligase YP_923809.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: tfu:Tfu_2787 hypothetical protein YP_923810.1 KEGG: sco:SCO0604 hypothetical protein YP_923811.1 KEGG: sma:SAV6637 hypothetical protein YP_923812.1 PFAM: aldo/keto reductase; KEGG: sma:SAV6640 oxidoreductase YP_923813.1 KEGG: fal:FRAAL4312 putative undecaprenol kinase (bacitracin resistance protein); TIGRFAM: putative undecaprenol kinase; PFAM: Bacitracin resistance protein BacA YP_923814.1 TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA family protein; KEGG: sma:SAV6643 putative ion transport protein YP_923815.1 PFAM: Phosphoglycerate mutase; KEGG: mmc:Mmcs_3157 phosphoglycerate mutase YP_923816.1 KEGG: sco:SCO1665 hypothetical protein YP_923817.1 KEGG: nfa:nfa29330 hypothetical protein YP_923818.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_923819.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nfa:nfa16520 hypothetical protein YP_923820.1 PFAM: protein of unknown function DUF75; KEGG: sma:SAV6650 hypothetical protein YP_923821.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity YP_923822.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: lxx:Lxx08260 hydrolase YP_923824.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: rha:RHA1_ro06091 sensor kinase, two-component system YP_923825.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: dge:Dgeo_0555 two component transcriptional regulator, LuxR family YP_923826.1 KEGG: fal:FRAAL2865 hypothetical protein YP_923827.1 PFAM: peptidase M50; KEGG: tfu:Tfu_1815 hypothetical protein YP_923828.1 PFAM: Methyltransferase type 11; KEGG: fal:FRAAL2867 SAM-dependent methyltransferase involved in tRNA-Met maturation YP_923829.1 KEGG: sco:SCO1648 AAA ATPase; PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase YP_923831.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: vvy:VV2843 hypothetical protein YP_923832.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rha:RHA1_ro03999 hypothetical protein YP_923833.1 PFAM: protein of unknown function DUF245 domain protein; protein of unknown function DUF275 domain protein; KEGG: sma:SAV6678 proteasome component YP_923834.1 PFAM: protein of unknown function DUF797; KEGG: sma:SAV6679 hypothetical protein YP_923835.1 PFAM: 20S proteasome, A and B subunits; KEGG: sma:SAV6681 putative 20S proteasome beta-subunit YP_923836.1 PFAM: 20S proteasome, A and B subunits; KEGG: sma:SAV6682 putative 20S proteasome alpha-subunit YP_923837.1 KEGG: mpa:MAP1247 hypothetical protein YP_923838.1 PFAM: protein of unknown function DUF245 domain protein; protein of unknown function DUF275 domain protein; KEGG: sma:SAV6685 proteasome component YP_923839.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: sma:SAV6686 FK-506 binding protein, peptidyl-prolyl cis-trans isomerase YP_923840.1 KEGG: tfu:Tfu_1771 similar to transcriptional regulator YP_923841.1 KEGG: fal:FRAAL2881 hypothetical protein YP_923842.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: fal:FRAAL3711 putative sec-independent protein translocase protein TatA/E YP_923843.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: sco:SCO1632 putative sec-independant protein translocase YP_923845.1 PFAM: diacylglycerol kinase, catalytic region; KEGG: sma:SAV6694 hypothetical protein YP_923846.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DSH domain protein; SMART: DEAD-like helicases-like; KEGG: sco:SCO1631 putative helicase YP_923847.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: fal:FRAAL4276 hypothetical protein YP_923848.1 KEGG: mlo:mll1182 probable dimethylaniline monooxygenase YP_923849.1 PFAM: 5'-3' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2; KEGG: sma:SAV6714 putative 5'-3' exonuclease YP_923850.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: sco:SCO1425 putative AsnC-family transcriptional regulatory protein YP_923851.1 PFAM: Radical SAM domain protein; KEGG: mxa:MXAN_4699 putative L-lysine 2,3-aminomutase YP_923852.1 KEGG: sth:STH34 Zn-dependent alcohol dehydrogenase and related dehydrogenase YP_923853.1 KEGG: sth:STH37 lysine 5,6-aminomutase alpha subunit YP_923854.1 PFAM: cobalamin B12-binding domain protein; KEGG: rfr:Rfer_3887 cobalamin B12-binding YP_923855.1 KEGG: rha:RHA1_ro05324 possible acyl-CoA hydrolase YP_923856.1 TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: fal:FRAAL3769 putative polyprenol-phosphate-mannosyl transferase YP_923857.1 PFAM: glycosyl transferase, family 2; KEGG: sco:SCO1423 glycosyl transferase YP_923858.1 PFAM: FxsA cytoplasmic membrane protein; KEGG: pau:PA14_57030 hypothetical protein YP_923859.1 KEGG: pac:PPA1223 hypothetical protein YP_923860.1 PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO1420 putative integral membrane protein YP_923861.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sma:SAV6927 putative glycerophosphoryl diester phosphodiesterase YP_923862.1 PFAM: helix-turn-helix domain protein; EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: sco:SCO5998 putative UDP-N-acetylglucosamine transferase YP_923863.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: lxx:Lxx23600 alcohol dehydrogenase YP_923864.1 KEGG: tfu:Tfu_1967 hypothetical protein YP_923865.1 PFAM: pentapeptide repeat protein YP_923867.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: nfa:nfa43930 putative transcriptional regulator YP_923868.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sco:SCO4436 lyase YP_923869.1 PFAM: ABC transporter related; KEGG: rha:RHA1_ro03835 UvrABC system protein A YP_923870.1 PFAM: plasmid stabilization system; KEGG: fal:FRAAL1798 hypothetical protein YP_923871.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: fra:Francci3_2678 prevent-host-death protein YP_923872.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rha:RHA1_ro03900 hypothetical protein YP_923873.1 PFAM: luciferase family protein; KEGG: nfa:nfa22130 putative monooxygenase YP_923874.1 KEGG: rha:RHA1_ro02398 possible membrane protein YP_923876.1 KEGG: nfa:nfa35130 hypothetical protein YP_923877.1 PFAM: YhhN family protein; KEGG: sma:SAV6447 hypothetical protein YP_923878.1 PFAM: aldo/keto reductase; KEGG: sco:SCO7356 oxidoreductase YP_923879.1 PFAM: alanine racemase domain protein; KEGG: cgb:cg2890 putative amino acid processing enzyme YP_923880.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: rha:RHA1_ro06901 peptidylprolyl isomerase YP_923881.1 KEGG: mmc:Mmcs_0605 short-chain dehydrogenase/reductase SDR YP_923882.1 PFAM: OsmC family protein; KEGG: sma:SAV2602 hypothetical protein YP_923884.1 KEGG: sma:SAV7509 serine/threonine protein kinase YP_923885.1 PFAM: aminotransferase, class V; KEGG: dra:DR0028 aminotransferase, putative YP_923886.1 KEGG: aba:Acid345_3562 hypothetical protein YP_923887.1 TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: fal:FRAAL1606 putative aminopeptidase YP_923888.1 PFAM: formate dehydrogenase, subunit FdhD; KEGG: rxy:Rxyl_0145 formate dehydrogenase family accessory protein FdhD YP_923889.1 KEGG: mpa:MAP4216 hypothetical protein YP_923890.1 KEGG: pac:PPA0986 hypothetical protein YP_923891.1 TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: sma:SAV7055 putative exonuclease YP_923892.1 KEGG: sma:SAV7056 putative exonuclease YP_923893.1 PFAM: peptidase U62, modulator of DNA gyrase; KEGG: sma:SAV6461 modulator of DNA gyrase YP_923894.1 KEGG: sco:SCO1817 hypothetical protein YP_923895.1 PFAM: CHAD domain containing protein; adenylate cyclase; KEGG: fal:FRAAL2447 hypothetical protein; putative adenylate cyclase domain YP_923898.1 PFAM: beta-lactamase; KEGG: sma:SAV4283 beta-lactamase YP_923899.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine YP_923900.1 SMART: regulatory protein, MerR; KEGG: pac:PPA1087 predicted transcriptional regulator YP_923901.1 PFAM: protein of unknown function DUF151; KEGG: sco:SCO1382 hypothetical protein YP_923902.1 PFAM: regulatory protein, MerR; KEGG: rha:RHA1_ro00905 possible transcriptional regulator YP_923903.1 PFAM: Forkhead-associated protein; KEGG: fra:Francci3_1468 FHA domain containing protein YP_923904.1 TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; KEGG: fra:Francci3_1467 glycine cleavage system H protein YP_923905.1 PFAM: protein of unknown function DUF881; KEGG: sco:SCO1385 hypothetical protein YP_923906.1 PFAM: protein of unknown function DUF1290; KEGG: sco:SCO1386 integral membrane protein YP_923907.1 PFAM: protein of unknown function DUF881; KEGG: sco:SCO1387 membrane associated protein YP_923908.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: tfu:Tfu_1393 putative CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyl-transferase YP_923909.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; KEGG: fra:Francci3_3000 protein of unknown function DUF21 YP_923910.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: fal:FRAAL4939 hypothetical protein YP_923911.1 KEGG: mxa:MXAN_6410 hypothetical protein YP_923912.1 PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_4681 protein of unknown function DUF1501 YP_923913.1 KEGG: bxe:Bxe_A1864 hypothetical protein YP_923914.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: rha:RHA1_ro04690 probable 2-nitropropane dioxygenase YP_923915.1 activates fatty acids by binding to coenzyme A; in Mycobacterium may be involved in virulence YP_923916.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_923917.1 KEGG: fal:FRAAL3586 hypothetical protein YP_923918.1 PFAM: regulatory protein, LacI; KEGG: rxy:Rxyl_2600 transcriptional regulator, LacI family YP_923919.1 activates fatty acids by binding to coenzyme A YP_923921.1 PFAM: luciferase family protein; KEGG: rha:RHA1_ro04686 probable 5,10-methylenetetrahydromethanopterin reductase YP_923922.1 PFAM: protein of unknown function DUF35; KEGG: nfa:nfa5230 hypothetical protein YP_923923.1 KEGG: mmc:Mmcs_4635 lipid-transfer protein YP_923924.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_923925.1 PFAM: helix-turn-helix domain protein; KEGG: sco:SCO7279 DNA-binding protein YP_923926.1 PFAM: peptidase S14, ClpP; KEGG: sco:SCO7280 putative ATP-dependent Clp protease proteolytic subunit 2 YP_923927.1 PFAM: peptidase S14, ClpP; KEGG: sco:SCO7281 putative ATP-dependent Clp protease proteolytic subunit 1 YP_923928.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: lxx:Lxx14830 methionine aminopeptidase YP_923929.1 KEGG: rha:RHA1_ro04679 cytochrome P450 CYP125 YP_923930.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_923931.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro04654 3-oxoacyl-[acyl-carrier-protein] reductase YP_923932.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro04653 short chain dehydrogenase YP_923933.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_923934.1 PFAM: coenzyme A transferase; KEGG: sma:SAV6202 putative glutaconate CoA-transferase, subunit A YP_923935.1 KEGG: nfa:nfa5080 putative CoA transferase beta subunit YP_923936.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: mmc:Mmcs_4686 2-nitropropane dioxygenase, NPD YP_923937.1 KEGG: rxy:Rxyl_3099 hypothetical protein YP_923938.1 KEGG: tma:TM0599 hypothetical protein YP_923943.1 PFAM: Integrase, catalytic region; KEGG: cef:CE2619 putative transposase YP_923944.1 KEGG: rpa:RPA2214 possible helicase YP_923946.1 PFAM: Integrase, catalytic region; KEGG: rha:RHA1_ro06977 possible transposase YP_923947.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: rha:RHA1_ro06982 possible insertion sequence ATP-binding protein YP_923948.1 KEGG: mbo:Mb3101 hypothetical protein YP_923949.1 PFAM: regulatory protein, MarR; KEGG: mmc:Mmcs_5385 transcriptional regulator, MarR family YP_923953.1 KEGG: rha:RHA1_ro04599 probable acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase YP_923954.1 PFAM: regulatory protein, TetR; KEGG: rha:RHA1_ro04598 possible transcriptional regulator YP_923955.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sma:SAV6197 putative oxidoreductase YP_923956.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rha:RHA1_ro04596 acyl-CoA dehydrogenase YP_923957.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rha:RHA1_ro04595 CoA ligase YP_923958.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: nfa:nfa4810 putative acyl-CoA dehydrogenase YP_923959.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: mmc:Mmcs_4696 acyl-CoA dehydrogenase-like protein YP_923960.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: nfa:nfa4790 putative acyl-CoA dehydrogenase YP_923961.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: sus:Acid_7653 cupin 2, conserved barrel domain protein YP_923962.1 PFAM: flavin reductase domain protein, FMN-binding; KEGG: rha:RHA1_ro08962 possible oxidoreductase YP_923963.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rha:RHA1_ro04541 3,4-DHSA dioxygenase YP_923964.1 PFAM: alpha/beta hydrolase fold; KEGG: nfa:nfa4730 putative hydrolase YP_923965.1 PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rha:RHA1_ro04539 3-HSA hydroxylase, oxygenase YP_923967.1 KEGG: rha:RHA1_ro05800 acetaldehyde dehydrogenase (acetylating) YP_923968.1 PFAM: Hydratase/decarboxylase; KEGG: rha:RHA1_ro08085 2-oxopent-4-enoate hydratase YP_923969.1 initiates steroid ring degradation; catalyzes the transhydrogenation of 3-keto-4-ene-steroid to 3-keto-1,4-diene-steroid e.g., progesterone to 1,4-androstadiene-3,17-dione YP_923970.1 PFAM: MaoC domain protein dehydratase; KEGG: rha:RHA1_ro04531 2-enoyl acyl-CoA hydratase YP_923971.1 PFAM: protein of unknown function DUF480; Methyltransferase type 11; Methyltransferase type 12; KEGG: sus:Acid_1185 protein of unknown function DUF480 YP_923972.1 KEGG: rha:RHA1_ro00985 hypothetical protein YP_923973.1 PFAM: protein of unknown function DUF344; KEGG: mbo:Mb3261c possible transcriptional regulatory protein PvdS (probable RNA polymerase sigma factor) YP_923974.1 KEGG: mpa:MAP2690c hypothetical protein YP_923975.1 KEGG: nfa:nfa4530 lipid-transfer protein YP_923976.1 PFAM: MaoC domain protein dehydratase; KEGG: mmc:Mmcs_4673 MaoC-like dehydratase YP_923977.1 PFAM: protein of unknown function DUF35; KEGG: nfa:nfa4510 hypothetical protein YP_923978.1 KEGG: nfa:nfa4510 hypothetical protein YP_923979.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rha:RHA1_ro04485 probable acyl-CoA dehydrogenase YP_923980.1 PFAM: alpha/beta hydrolase fold; KEGG: nfa:nfa15720 putative hydrolase YP_923981.1 PFAM: protein of unknown function UPF0089; KEGG: rha:RHA1_ro06855 hypothetical protein YP_923982.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: rha:RHA1_ro06856 possible esterase/lipase YP_923983.1 KEGG: sco:SCO2409 secreted protein YP_923984.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rha:RHA1_ro04483 possible acyl-CoA dehydrogenase YP_923985.1 KEGG: tfu:Tfu_0569 hypothetical protein YP_923986.1 KEGG: mmc:Mmcs_5100 hypothetical protein YP_923987.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rha:RHA1_ro04657 possible methyltransferase YP_923988.1 PFAM: glycosyl transferase, group 1; KEGG: rha:RHA1_ro04656 probable phosphatidylinositol alpha-mannosyltransferase YP_923989.1 PFAM: regulatory protein, TetR; KEGG: nfa:nfa4470 putative transcriptional regulator YP_923990.1 KEGG: fra:Francci3_1080 hypothetical protein YP_923991.1 TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: nfa:nfa48950 putative peptide chain release factor YP_923992.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; regulatory protein, ArsR; KEGG: mmc:Mmcs_4520 transcriptional regulator, ArsR family YP_923993.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sme:SMb21154 hypothetical protein, bleomycin resistance protein family YP_923994.1 PFAM: protein of unknown function UPF0060; KEGG: rha:RHA1_ro06609 hypothetical protein YP_923995.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rha:RHA1_ro04958 bifunctional ABC multidrug transporter YP_923998.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: fal:FRAAL3997 hypothetical protein YP_923999.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: tbd:Tbd_1055 S-adenosylmethionine-dependent methyltransferase YP_924001.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: nfa:nfa42140 hypothetical protein YP_924002.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bur:Bcep18194_B1012 short-chain dehydrogenase/reductase SDR YP_924003.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: nfa:nfa5340 putative short chain dehydrogenase YP_924004.1 KEGG: mmc:Mmcs_3697 hypothetical protein YP_924005.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: fal:FRAAL1022 putative thioredoxin reductase YP_924006.1 KEGG: sma:SAV5892 hypothetical protein YP_924007.1 KEGG: sma:SAV5893 hypothetical protein YP_924008.1 TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5894 putative secreted protein YP_924009.1 TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5895 putative secreted protein YP_924010.1 TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5896 mce-related protein YP_924011.1 TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5897 putative secreted protein YP_924012.1 TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: rha:RHA1_ro01970 possible Mce family protein YP_924013.1 TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5899 mce-related protein YP_924014.1 PFAM: protein of unknown function DUF140; KEGG: sma:SAV5900 hypothetical protein YP_924015.1 PFAM: protein of unknown function DUF140; KEGG: sco:SCO2421 putative ABC-transporter integral membrane protein YP_924016.1 PFAM: protein of unknown function DUF1707; KEGG: tfu:Tfu_0460 hypothetical protein YP_924017.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rha:RHA1_ro11203 response regulator, two-component system YP_924018.1 PFAM: GAF domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: rha:RHA1_ro03573 anti-sigma factor, possible RsbU YP_924019.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: fal:FRAAL3944 hypothetical membrane protein YP_924020.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: eli:ELI_05015 hypothetical protein YP_924021.1 PFAM: glycosyl transferase, family 2; KEGG: rha:RHA1_ro03574 probable cellulose synthase catalytic subunit YP_924022.1 TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rha:RHA1_ro03575 anti-sigma factor antagonist, possible RsbV YP_924023.1 KEGG: mmc:Mmcs_0408 putative anti-sigma regulatory factor, serine/threonine protein kinase YP_924024.1 PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro05089 probable MFS transporter YP_924025.1 KEGG: sco:SCO2460 hypothetical protein YP_924026.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_924027.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: tfu:Tfu_2817 phospholipase D/Transphosphatidylase YP_924028.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: nfa:nfa52610 hypothetical protein YP_924029.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: nfa:nfa26950 short chain dehydrogenase YP_924030.1 KEGG: nfa:nfa56060 hypothetical protein YP_924031.1 PFAM: 5'-3' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2; KEGG: mmc:Mmcs_3011 DNA polymerase I YP_924032.1 KEGG: dge:Dgeo_0459 hypothetical protein YP_924034.1 catalyzes the ATP-dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA YP_924035.1 PFAM: regulatory protein, TetR; KEGG: mma:MM2546 hypothetical protein YP_924036.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_924037.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_924038.1 PFAM: MaoC domain protein dehydratase; KEGG: abo:ABO_1719 MaoC domain protein, putative YP_924039.1 PFAM: acyl-CoA thioesterase; KEGG: tfu:Tfu_0531 acyl-CoA thioesterase YP_924040.1 PFAM: acyl-CoA thioesterase; KEGG: rha:RHA1_ro06887 acyl-CoA thioesterase II YP_924041.1 PFAM: protein of unknown function DUF75; KEGG: mpa:MAP2831 hypothetical protein YP_924042.1 KEGG: tfu:Tfu_1903 thiolase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase YP_924043.1 PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: tfu:Tfu_1904 fatty acid oxidation complex alpha-subunit YP_924044.1 KEGG: ade:Adeh_3529 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_924045.1 KEGG: sth:STH1795 hypothetical protein YP_924046.1 PFAM: amino acid permease-associated region; KEGG: rxy:Rxyl_2013 amino acid permease-associated region YP_924047.1 KEGG: sco:SCO2134 hypothetical protein YP_924048.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_924049.1 PFAM: Strictosidine synthase; SMP-30/Gluconolaconase/LRE domain protein; KEGG: mmc:Mmcs_1217 strictosidine synthase YP_924050.1 PFAM: NUDIX hydrolase; KEGG: mpa:MAP2711c hypothetical protein YP_924051.1 PFAM: glycoside hydrolase, family 18; SMART: chitinase II; KEGG: dsy:DSY4848 hypothetical protein YP_924052.1 PFAM: transcriptional regulator domain protein; transcriptional activator domain; KEGG: rha:RHA1_ro05028 probable transcriptional regulator YP_924053.1 PFAM: MMPL domain protein; KEGG: rha:RHA1_ro05027 membrane protein YP_924054.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mbo:Mb2593 probable glutamine-transport ATP-binding protein ABC transporter GlnQ YP_924055.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO2674 ABC transporter ATP-binding protein YP_924056.1 PFAM: protein of unknown function DUF214; KEGG: fal:FRAAL5378 putative ABC transport system integral membrane protein YP_924058.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: tfu:Tfu_0384 cold shock protein YP_924059.1 PFAM: protein of unknown function UPF0047; KEGG: fra:Francci3_3056 protein of unknown function UPF0047 YP_924060.1 PFAM: protein of unknown function DUF77; KEGG: cdi:DIP1058 hypothetical protein YP_924062.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sma:SAV6340 RNA polymerase ECF-subfamily sigma factor YP_924064.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: mtc:MT3905 IS1557, transposase YP_924065.1 Catalyzes the conversion of citrate to isocitrate YP_924066.1 PFAM: DoxX family protein; KEGG: hma:rrnAC1471 terminal quinol oxidase subunit YP_924067.1 with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism YP_924068.1 catalyzes the formation of precorrin 6x from precorrin 5 YP_924069.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation YP_924070.1 KEGG: tfu:Tfu_0310 precorrin-6x reductase CbiJ/CobK; TIGRFAM: precorrin-6x reductase; PFAM: Precorrin-6x reductase CbiJ/CobK YP_924071.1 KEGG: sma:SAV2049 hypothetical protein YP_924072.1 KEGG: rpc:RPC_2504 hypothetical protein YP_924073.1 KEGG: pac:PPA0659 conserved protein, putative NADH:ubiquinone oxidoreductase YP_924074.1 TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: sco:SCO1847 cobalamin biosynthesis protein YP_924075.1 PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; KEGG: nfa:nfa17000 putative nicotinate-nucleotide- dimethylbenzimidazole phosphoribosyltransferase YP_924076.1 TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid a,c-diamide synthase; aminotransferase, class I and II; CobB/CobQ domain protein glutamine amidotransferase; KEGG: pac:PPA0438 cobyrinic acid a,c-diamide synthase YP_924077.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide YP_924078.1 KEGG: tfu:Tfu_0313 Mg-chelatase subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; von Willebrand factor, type A; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase YP_924079.1 KEGG: tfu:Tfu_0314 SAM (and some other nucleotide) binding motif; TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_924080.1 TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: nfa:nfa50340 putative methyltransferase YP_924081.1 TIGRFAM: precorrin-3B C17-methyltransferase; precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: tfu:Tfu_0316 precorrin-3B C17-methyltransferase region:precorrin-2 C20-methyltransferase YP_924082.1 PFAM: Precorrin-8X methylmutase CbiC/CobH; KEGG: tfu:Tfu_0317 precorrin-8X methylmutase YP_924083.1 PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; KEGG: tfu:Tfu_0318 cobalamin biosynthesis protein CobG, precorrin-3B synthase YP_924084.1 TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rba:RB12326 sensory histidine protein kinase YP_924085.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: rha:RHA1_ro03198 hypothetical protein YP_924087.1 KEGG: rha:RHA1_ro00918 hypothetical protein YP_924090.1 PFAM: deoxyribonuclease/rho motif-related TRAM; KEGG: sma:SAV2389 putative RNA methyltransferase YP_924091.1 KEGG: nfa:nfa37450 putative transporter YP_924092.1 PFAM: TrkA-N domain protein; KEGG: sma:SAV2391 putative potassium transporter YP_924093.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: pac:PPA1057 Trk system potassium uptake protein YP_924094.1 KEGG: tfu:Tfu_1932 hypothetical protein YP_924095.1 PFAM: nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: sma:SAV2394 hypothetical protein YP_924096.1 KEGG: fra:Francci3_1319 conserved hypothetical protein YP_924097.1 KEGG: tfu:Tfu_1935 deoxyUTP pyrophosphatase subfamily 1; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase YP_924098.1 KEGG: sma:SAV2401 secreted protein YP_924099.1 KEGG: fra:Francci3_1317 hypothetical protein YP_924100.1 KEGG: sma:SAV2403 hypothetical protein YP_924101.1 PFAM: inositol monophosphatase; KEGG: sco:SCO5860 SuhB protein YP_924102.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic YP_924103.1 PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV2408 transmembrane efflux protein YP_924104.1 PFAM: protein of unknown function UPF0126; KEGG: nmu:Nmul_A0854 hypothetical protein YP_924105.1 KEGG: sma:SAV2411 DNA-binding protein YP_924106.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; KR; KEGG: hch:HCH_04995 short-chain alcohol dehydrogenase-like protein YP_924107.1 PFAM: Rhodanese domain protein; KEGG: nfa:nfa10240 putative thiosulfate sulfurtransferase YP_924108.1 catalyzes the formation of thymidine 5'-phosphate from thymidine YP_924109.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: nfa:pnf1290 hypothetical protein YP_924110.1 PFAM: protein of unknown function DUF156; KEGG: rha:RHA1_ro03538 hypothetical protein YP_924111.1 KEGG: atc:AGR_C_1708 copper-transporting ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein YP_924112.1 KEGG: ath:At2g05440_1 glycine-rich protein YP_924114.1 PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: nfa:pnf1230 putative multicopper oxidase YP_924115.1 KEGG: rha:RHA1_ro11202 hypothetical protein YP_924116.1 PFAM: regulatory protein, ArsR; KEGG: rha:RHA1_ro11232 probable transcriptional regulator, ArsR family YP_924117.1 KEGG: rha:RHA1_ro11231 hypothetical protein YP_924118.1 PFAM: protein of unknown function DUF202; KEGG: rha:RHA1_ro11230 hypothetical protein YP_924119.1 PFAM: beta-lactamase domain protein; SMART: Rhodanese domain protein; KEGG: rha:RHA1_ro11229 possible hydroxyacylglutathione hydrolase YP_924120.1 KEGG: rha:RHA1_ro11228 possible NADH dehydrogenase YP_924121.1 PFAM: SirA family protein; KEGG: rha:RHA1_ro11227 hypothetical protein YP_924122.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Polysulphide reductase, NrfD; KEGG: rha:RHA1_ro11226 probable polysulphide reductase YP_924123.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: rha:RHA1_ro11225 hypothetical protein YP_924124.1 PFAM: protein of unknown function DUF59; KEGG: rha:RHA1_ro11224 possible ATPase YP_924125.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; sulphate transporter; KEGG: aeh:Mlg_1668 sulfate transporter YP_924126.1 PFAM: beta-lactamase domain protein; SMART: Rhodanese domain protein; KEGG: rha:RHA1_ro11243 hypothetical protein YP_924127.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: cef:CE0279 putative sensor kinase YP_924128.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sth:STH750 two-component response regulator, probably involved in phosphate sensing YP_924129.1 KEGG: chy:CHY_1866 hypothetical protein YP_924131.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; PAS fold domain protein; KEGG: dge:Dgeo_0556 multi-sensor signal transduction histidine kinase YP_924132.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: dra:DR0987 DNA-binding response regulator YP_924133.1 PFAM: Cytochrome b/b6, N-terminal domain; KEGG: oih:OB1775 menaquinol-cytochrome-c reductase cytochrome b subunit YP_924134.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: tfu:Tfu_2126 hypothetical protein YP_924135.1 KEGG: sco:SCO5843 hypothetical protein YP_924136.1 KEGG: sme:SMb20814 hypothetical protein YP_924137.1 PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: tfu:Tfu_2128 hypothetical protein YP_924138.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_924139.1 KEGG: rha:RHA1_ro08664 possible lipoprotein YP_924140.1 PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro08665 probable multidrug resistance transporter, MFS superfamily YP_924141.1 PFAM: carbonic anhydrase; KEGG: tfu:Tfu_2132 carbonic anhydrase, putative YP_924142.1 TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: lxx:Lxx03420 acetate kinase YP_924143.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate YP_924144.1 TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: sco:SCO7046 putative integral membrane protein YP_924145.1 PFAM: protein of unknown function DUF190; KEGG: sco:SCO7045 hypothetical protein YP_924146.1 TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: sma:SAV1322 putative integral membrane protein YP_924147.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_924148.1 KEGG: tfu:Tfu_2135 hypothetical protein YP_924149.1 KEGG: nfa:nfa53640 hypothetical protein YP_924150.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: rha:RHA1_ro06410 hypothetical protein YP_924152.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released YP_924153.1 PFAM: HhH-GPD family protein; KEGG: mbo:Mb1187 hypothetical protein YP_924154.1 PFAM: regulatory protein, TetR; KEGG: fal:FRAAL4786 putative transcriptional regulator YP_924155.1 TIGRFAM: glycosyltransferase, MGT family; PFAM: UDP-glucuronosyl/UDP-glucosyltransferase; glycosyl transferase, family 28; Glycosyltransferase 28, C-terminal domain; KEGG: mmc:Mmcs_1269 glycosyltransferase, MGT family YP_924156.1 PFAM: UspA domain protein; KEGG: rfr:Rfer_0629 UspA YP_924158.1 PFAM: glutamate--cysteine ligase, GCS2; KEGG: sco:SCO7509 hypothetical protein YP_924159.1 TIGRFAM: uncharacterized enzyme; PFAM: glutamate--cysteine ligase, GCS2; KEGG: sco:SCO7331 hypothetical protein YP_924160.1 KEGG: tfu:Tfu_2217 hypothetical protein YP_924161.1 PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: fra:Francci3_3532 phage integrase YP_924162.1 PFAM: phage integrase family protein; KEGG: rha:RHA1_ro10276 possible DNA integrase/recombinase YP_924164.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_924165.1 TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: sma:SAV6937 antagonist of KipI YP_924166.1 PFAM: Allophanate hydrolase subunit 1; KEGG: sma:SAV6938 inhibitor of KinA YP_924167.1 PFAM: LamB/YcsF family protein; KEGG: sma:SAV6939 putative lactam utilization protein YP_924168.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller; KEGG: nfa:nfa5630 putative protease YP_924169.1 PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: pac:PPA1031 RNA polymerase principal sigma factor HrdD YP_924170.1 KEGG: sco:SCO1996 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase YP_924172.1 KEGG: ade:Adeh_2705 response regulator receiver YP_924173.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: aba:Acid345_1672 methyl-accepting chemotaxis sensory transducer YP_924174.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: fal:FRAAL1787 hypothetical protein YP_924175.1 PFAM: regulatory protein, TetR; KEGG: sma:SAV1468 TetR-family transcriptional regulator YP_924176.1 PFAM: AMP-dependent synthetase and ligase; KEGG: fal:FRAAL1640 putative acyl-CoA synthetase, long-chain fatty acid:CoA ligase YP_924177.1 PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; KEGG: sma:SAV3030 AraC-family transcriptional regulator YP_924178.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_924179.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: tfu:Tfu_0150 hypothetical protein YP_924180.1 KEGG: rha:RHA1_ro05190 hypothetical protein YP_924181.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sus:Acid_4357 methyltransferase type 11 YP_924182.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: aba:Acid345_3613 NAD-dependent epimerase/dehydratase YP_924183.1 PFAM: glycosyl transferase, family 2; KEGG: ava:Ava_3351 glycosyl transferase, family 2 YP_924184.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: pfu:PF1631 NDP-sugar dehydrogenase YP_924185.1 KEGG: nfa:nfa24300 hypothetical protein YP_924186.1 PFAM: acyltransferase 3; KEGG: cef:CE2680 hypothetical protein YP_924187.1 KEGG: nfa:nfa54700 hypothetical protein YP_924188.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: tfu:Tfu_2465 hypothetical protein YP_924189.1 PFAM: glycosyl transferase, group 1; KEGG: rha:RHA1_ro05187 possible glycosyl transferase YP_924190.1 KEGG: tfu:Tfu_2469 hypothetical protein YP_924191.1 PFAM: polysaccharide biosynthesis protein; KEGG: rha:RHA1_ro05189 possible xylose transporter YP_924192.1 PFAM: glycoside hydrolase 15-related; KEGG: sco:SCO1830 hypothetical protein YP_924193.1 KEGG: ade:Adeh_3192 hypothetical protein YP_924194.1 PFAM: luciferase family protein; KEGG: mlo:mll2315 alkanal monooxygenase (bacterial liciferase alpha chain) like protein YP_924195.1 KEGG: nfa:nfa18750 putative DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2 YP_924196.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: sma:SAV6225 hypothetical protein YP_924197.1 PFAM: GCN5-related N-acetyltransferase YP_924198.1 PFAM: protein of unknown function DUF554; KEGG: tfu:Tfu_1187 conserved hypothetical protein YP_924199.1 PFAM: extracellular solute-binding protein, family 3; SMART: ionotropic glutamate receptor; KEGG: sma:SAV6400 putative ABC transporter substrate-binding protein YP_924200.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV6401 putative ABC transporter permease protein YP_924201.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV6402 putative ABC transporter ATP-binding protein YP_924202.1 PFAM: inner-membrane translocator; KEGG: tfu:Tfu_1182 branched-chain amino acid ABC-type transport system permease components YP_924203.1 PFAM: inner-membrane translocator; KEGG: tfu:Tfu_1183 branched-chain amino acid transport system permease protein YP_924204.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rha:RHA1_ro00993 ABC branched-chain amino acid transporter, ATP-binding component YP_924205.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rha:RHA1_ro00994 ABC branched-chain amino acid transport, ATP-binding component YP_924206.1 PFAM: Extracellular ligand-binding receptor; KEGG: rha:RHA1_ro00995 probable branched-chain amino acid ABC transporter binding protein YP_924207.1 PFAM: response regulator receiver; ANTAR domain protein; KEGG: tfu:Tfu_1181 response regulator receiver YP_924208.1 KEGG: sma:SAV6218 hypothetical protein YP_924209.1 PFAM: pyruvate kinase; KEGG: sma:SAV6217 putative pyruvate kinase YP_924210.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate YP_924211.1 PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: sco:SCO2026 putative glutamate synthase large subunit YP_924212.1 PFAM: prolipoprotein diacylglyceryl transferase; KEGG: sco:SCO7822 probable prolipoprotein diacylglyceryl transferase. YP_924213.1 PFAM: electron transport protein SCO1/SenC; KEGG: fra:Francci3_2499 electron transport protein SCO1/SenC YP_924214.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_924215.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_924216.1 PFAM: Indole-3-glycerol phosphate synthase; KEGG: tfu:Tfu_1164 indole-3-glycerol-phosphate synthase YP_924217.1 KEGG: aba:Acid345_1888 hypothetical protein YP_924218.1 KEGG: rha:RHA1_ro04356 hypothetical protein YP_924219.1 KEGG: lxx:Lxx11270 mambrane protein YP_924220.1 KEGG: tfu:Tfu_1160 hypothetical protein YP_924221.1 PFAM: phosphoribosyl-AMP cyclohydrolase; KEGG: fra:Francci3_3021 phosphoribosyl-AMP cyclohydrolase YP_924222.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tfu:Tfu_1158 ABC-type multidrug transport system ATPase and permease components YP_924223.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tfu:Tfu_1157 ABC-type multidrug transport system ATPase and permease components YP_924224.1 KEGG: nfa:nfa38650 hypothetical protein YP_924225.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dsy:DSY4468 hypothetical protein YP_924226.1 PFAM: DsrC family protein; KEGG: mta:Moth_1632 DsrC-like protein YP_924227.1 KEGG: dsy:DSY4470 hypothetical protein YP_924228.1 TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis; KEGG: sma:SAV6160 putative cyclase YP_924229.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide and the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)anthranilate; involved in histidine and tryptophan biosynthesis YP_924231.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_924232.1 PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: blo:BL1297 imidazoleglycerol-phosphate dehydratase YP_924233.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_924234.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_924235.1 PFAM: peptidase S16, lon domain protein; KEGG: sma:SAV6150 hypothetical protein YP_924236.1 TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: sma:SAV6149 transcriptional regulator YP_924237.1 KEGG: tfu:Tfu_0463 hypothetical protein YP_924239.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase YP_924240.1 PFAM: GCN5-related N-acetyltransferase; Chorismate mutase; KEGG: sco:SCO1988 hypothetical protein YP_924241.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: sco:SCO2073 putative ribosomal large subunit pseudouridine synthase YP_924242.1 PFAM: peptidase A8, signal peptidase II; KEGG: fal:FRAAL2208 lipoprotein signal peptidase (prolipoprotein signal peptidase) (signal peptidase II) (SPase II) (partial match) YP_924243.1 PFAM: zinc finger, DksA/TraR C4-type; KEGG: rfr:Rfer_3349 histone protein YP_924244.1 PFAM: DivIVA family protein; KEGG: tfu:Tfu_1118 hypothetical protein YP_924245.1 KEGG: sma:SAV6128 hypothetical protein YP_924246.1 PFAM: protein of unknown function DUF552; KEGG: tfu:Tfu_1116 hypothetical protein YP_924247.1 PFAM: alanine racemase domain protein; KEGG: tfu:Tfu_1115 protein of unknown function UPF0001 YP_924248.1 PFAM: protein of unknown function DUF152; KEGG: pac:PPA0762 conserved protein YP_924249.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_924250.1 PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein, FtsQ-type; KEGG: pac:PPA0760 cell division protein FtsQ YP_924251.1 TIGRFAM: UDP-N-acetylmuramate--alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: tfu:Tfu_1111 UDP-N-acetylmuramate--alanine ligase YP_924252.1 KEGG: sco:SCO2084 putative UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; TIGRFAM: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: glycosyl transferase, family 28; Glycosyltransferase 28, C-terminal domain YP_924253.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: sma:SAV6121 putative cell division protein FtsW YP_924254.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_924255.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_924256.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: sco:SCO2088 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase YP_924257.1 TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetases; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: sma:SAV6117 putative UDP-N-acetylmuramoylalanyl-D-glutamate- 2,6-diaminopimelate ligase YP_924258.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: sco:SCO2090 cell division protein YP_924259.1 KEGG: sma:SAV6115 hypothetical protein YP_924260.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: sma:SAV6114 S-adenosyl-methyltransferase YP_924261.1 TIGRFAM: MraZ protein; PFAM: protein of unknown function UPF0040; KEGG: pac:PPA0749 MraZ protein YP_924262.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: sma:SAV6112 putative regulatory protein YP_924263.1 PFAM: protein of unknown function DUF58; KEGG: sco:SCO2095 hypothetical protein YP_924264.1 PFAM: transglutaminase domain protein; KEGG: sma:SAV6110 hypothetical protein YP_924265.1 KEGG: sco:SCO2097 hypothetical protein YP_924266.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sma:SAV6108 methyltransferase YP_924267.1 KEGG: fra:Francci3_1400 hypothetical protein YP_924269.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: nfa:nfa28580 hypothetical protein YP_924270.1 PFAM: arsenate reductase and related; KEGG: mxa:MXAN_3126 putative arsenate reductase YP_924271.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: sma:SAV6102 phytoene dehydrogenase YP_924272.1 TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; KEGG: fal:FRAAL2163 5,10-methylenetetrahydrofolate reductase YP_924273.1 PFAM: Polyprenyl synthetase; KEGG: tfu:Tfu_1051 putative polyprenyl synthase / dimethylallyltranstransferase YP_924274.1 KEGG: tfu:Tfu_1045 hypothetical protein YP_924275.1 PFAM: protein kinase; PASTA domain containing protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: sco:SCO2110 putative eukaryotic-type serine/threonine protein kinase YP_924276.1 KEGG: fra:Francci3_0800 HNH nuclease YP_924277.1 KEGG: sco:SCO3763 hypothetical protein YP_924278.1 KEGG: rba:RB9350 hypothetical protein YP_924279.1 KEGG: sma:SAV6091 putative endonuclease IV; TIGRFAM: apurinic endonuclease Apn1; PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease, family 2 YP_924280.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: pac:PPA0728 membrane spanning protein DUF6 YP_924281.1 TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; KEGG: tfu:Tfu_1039 phospho-2-dehydro-3-deoxyheptonate aldolase, subtype 2 YP_924282.1 KEGG: pac:PPA0345 hypothetical protein YP_924283.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase, class I and II; KEGG: sth:STH2403 threonine aldolase YP_924284.1 PFAM: blue (type 1) copper domain protein; KEGG: aba:Acid345_1788 plastocyanin-like protein YP_924285.1 KEGG: sma:SAV6086 putative 2-dehydro-3-deoxyphosphoheptonate aldolase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase, class II YP_924286.1 PFAM: amino acid permease-associated region; KEGG: mmc:Mmcs_4568 amino acid permease-associated region YP_924287.1 catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate YP_924288.1 PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO2690 membrane transport protein YP_924289.1 PFAM: protein of unknown function DUF1028; KEGG: rxy:Rxyl_0871 protein of unknown function DUF1028 YP_924290.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase, FGGY; KEGG: rxy:Rxyl_1063 glycerol kinase YP_924291.1 KEGG: nfa:nfa6330 hypothetical protein YP_924292.1 PFAM: flavin reductase domain protein, FMN-binding; KEGG: rpb:RPB_1003 flavin reductase-like, FMN-binding YP_924293.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: fra:Francci3_3088 phospholipid/glycerol acyltransferase YP_924294.1 PFAM: alpha/beta hydrolase fold; KEGG: sco:SCO2123 putative esterase/lipase YP_924295.1 KEGG: sco:SCO2124 hypothetical protein YP_924296.1 PFAM: LOR/SDH bifunctional enzyme conserved domain protein; KEGG: fal:FRAAL5090 hypothetical protein YP_924297.1 PFAM: ROK family protein; KEGG: tfu:Tfu_0273 glucokinase ROK YP_924298.1 TIGRFAM: putative glucokinase, ROK family; PFAM: ROK family protein; KEGG: fal:FRAAL5091 putative glucokinase (glucose kinase) YP_924300.1 PFAM: Anion-transporting ATPase; KEGG: rxy:Rxyl_1314 arsenite-activated ATPase (ArsA) YP_924301.1 PFAM: cyclase/dehydrase; KEGG: sco:SCO2129 hypothetical protein YP_924302.1 PFAM: AMP-dependent synthetase and ligase; KEGG: sma:SAV6069 putative acyl-CoA synthetase, long-chain-fatty-acid:CoA ligase YP_924303.1 PFAM: SAF domain; KEGG: sus:Acid_4161 SAF domain YP_924304.1 KEGG: ade:Adeh_2826 Flp pilus assembly protein ATPase CpaE-like YP_924305.1 PFAM: type II secretion system protein E; KEGG: dde:Dde_2363 type II/IV secretion system protein YP_924306.1 PFAM: type II secretion system protein; KEGG: cte:CT0435 TadB protein YP_924307.1 PFAM: type II secretion system protein; KEGG: mxa:MXAN_4650 type II secretion system protein F domain protein YP_924308.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: rxy:Rxyl_2612 GAF sensor signal transduction histidine kinase YP_924309.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: rha:RHA1_ro00150 response regulator, two-component system YP_924310.1 PFAM: Flp/Fap pilin component YP_924311.1 PFAM: peptidase M48, Ste24p; KEGG: mta:Moth_1231 STE24 endopeptidase YP_924312.1 KEGG: sma:SAV6064 hypothetical protein YP_924313.1 PFAM: NLP/P60 protein; KEGG: sco:SCO4793 NPL/P60 family secreted protein YP_924314.1 KEGG: mmc:Mmcs_3288 hypothetical protein YP_924315.1 KEGG: sma:SAV6061 hypothetical protein YP_924316.1 KEGG: sma:SAV6060 hypothetical protein YP_924317.1 contains 3'-5'exonuclease domain YP_924318.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: tfu:Tfu_1025 putative transcriptional regulator YP_924319.1 KEGG: ppr:PBPRA0653 hypothetical protein YP_924320.1 KEGG: sma:SAV6056 putative anthranilate phosphoribosyltransferase; TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase, family 3 YP_924321.1 KEGG: rha:RHA1_ro05908 hypothetical protein YP_924322.1 KEGG: fal:FRAAL4308 hypothetical protein YP_924323.1 PFAM: cytochrome c oxidase, subunit III; KEGG: sco:SCO2151 cytochrome c oxidase subunit III YP_924324.1 PFAM: cytochrome c, class I; KEGG: sco:SCO2150 cytochrome C heme-binding subunit YP_924325.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: pac:PPA0711 ubiquinol-cytochrome c reductase iron-sulfur subunit YP_924326.1 PFAM: Cytochrome b/b6, N-terminal domain; KEGG: pac:PPA0710 cytochrome b subunit YP_924327.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: mmc:Mmcs_1448 ErfK/YbiS/YcfS/YnhG YP_924328.1 KEGG: pac:PPA0703 hypothetical protein YP_924329.1 PFAM: cytochrome c oxidase, subunit I; KEGG: sco:SCO2155 putative cytochrome c oxidase subunit I YP_924330.1 PFAM: cytochrome c oxidase, subunit II; cytochrome C oxidase subunit II, transmembrane region; KEGG: pac:PPA0701 cytochrome c oxidase subunit II YP_924331.1 PFAM: aminotransferase, class V; KEGG: sco:SCO2157 aminotransferase YP_924332.1 PFAM: SirA family protein; KEGG: sma:SAV6046 aminotransferase YP_924333.1 PFAM: PfkB domain protein; KEGG: sco:SCO2158 kinase YP_924335.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: sma:SAV6042 hypothetical protein YP_924336.1 PFAM: glycerate kinase; KEGG: tfu:Tfu_1010 glycerate kinase YP_924337.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rxy:Rxyl_1997 GCN5-related N-acetyltransferase YP_924338.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_924339.1 KEGG: sco:SCO2203 hypothetical protein YP_924340.1 putative metalloprotease YP_924341.1 PFAM: PspA/IM30 family protein; KEGG: sco:SCO2168 putative phage shock protein A YP_924342.1 KEGG: sco:SCO2169 integral membrane protein YP_924343.1 PFAM: aldo/keto reductase; KEGG: mxa:MXAN_6482 oxidoreductase, aldo/keto reductase family YP_924344.1 TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: sco:SCO7475 putative phenylacetic acid degradation NADH oxidoreductase PaaE YP_924345.1 TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59; KEGG: sco:SCO7474 putative phenylacetic acid degradation protein PaaD YP_924346.1 TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: rpc:RPC_0689 phenylacetate-CoA oxygenase, PaaI subunit YP_924347.1 with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation YP_924348.1 with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA YP_924349.1 PFAM: GCN5-related N-acetyltransferase; KEGG: tfu:Tfu_0789 hypothetical protein YP_924351.1 PFAM: AzlC family protein; KEGG: tfu:Tfu_1138 hypothetical protein YP_924352.1 PFAM: branched-chain amino acid transport; KEGG: sco:SCO5764 hypothetical protein YP_924353.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; phosphotransferase system, EIIC; phosphotransferase system, lactose/cellobiose-specific IIB subunit; KEGG: ppr:PBPRB0363 putative mannitol-specific IIABC component, PTS system YP_924354.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pac:PPA0918 putative zinc-binding sorbitol dehydrogenase YP_924355.1 PFAM: peptidase M4, thermolysin; Propeptide, peptidase M4 and M36; Peptidase M4, thermolysin; KEGG: sma:SAV5669 neutral zinc metalloprotease YP_924356.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_924357.1 KEGG: nfa:nfa6240 hypothetical protein YP_924358.1 KEGG: rha:RHA1_ro07230 hypothetical protein YP_924359.1 KEGG: rha:RHA1_ro07229 hypothetical protein YP_924360.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: sma:SAV1635 hypothetical protein YP_924361.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: nfa:nfa22150 putative sigma factor YP_924365.1 PFAM: peptidase M16 domain protein; KEGG: fal:FRAAL5752 putative zinc protease YP_924366.1 KEGG: sma:SAV2523 putative guanosine pentaphosphate synthetase/polyribonucleotide nucleotidyltransferase alpha chain; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein YP_924367.1 PFAM: ribosomal protein S15; KEGG: tfu:Tfu_0783 ribosomal protein S15, bacterial chloroplast and mitochondrial type YP_924368.1 KEGG: xcb:XC_3880 hypothetical protein YP_924370.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: mmc:Mmcs_0083 phosphoenolpyruvate-protein phosphotransferase YP_924371.1 PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: nfa:nfa28560 putative transcriptional regulator YP_924372.1 PFAM: PfkB domain protein; KEGG: nfa:nfa28550 putative fructose-1-phosphate kinase YP_924373.1 TIGRFAM: PTS system, fructose-specific, IIB subunnit; PTS system, fructose subfamily, IIA subunit; PTS system, fructose subfamily, IIC subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; phosphotransferase system, EIIC; phosphotransferase system PTS, fructose-specific IIB subunit; KEGG: mmc:Mmcs_0080 phosphotransferase system, fructose IIC component YP_924374.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: mmc:Mmcs_0079 phosphotransferase system, HPr YP_924375.1 KEGG: mbo:Mb2137 probable integral membrane protein YP_924376.1 TIGRFAM: riboflavin biosynthesis protein RibF; cytidyltransferase-related domain; PFAM: Riboflavin kinase / FAD synthetase; cytidylyltransferase; KEGG: lxx:Lxx07280 riboflavin kinase/ FMN adenyltransferase YP_924377.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs YP_924378.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_924379.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_924380.1 PFAM: protein of unknown function DUF448; KEGG: mmc:Mmcs_2081 protein of unknown function DUF448 YP_924381.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_924382.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins YP_924384.1 KEGG: sco:SCO5701 hypothetical protein YP_924385.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: fra:Francci3_1747 HAD-superfamily hydrolase, subfamily IA, variant 1 YP_924386.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_924387.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sma:SAV2560 putative acetyltransferase YP_924389.1 PFAM: phosphoesterase; KEGG: pac:PPA1745 hypothetical protein (phosphoesterase family) YP_924390.1 PFAM: phosphoesterase; KEGG: bam:Bamb_5381 phosphoesterase YP_924391.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_924392.1 PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein; KEGG: sma:SAV2562 putative metalloprotease YP_924393.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_924394.1 TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; KEGG: rha:RHA1_ro05598 4-aminobutyrate transaminase YP_924395.1 KEGG: rso:RS05802 putative transmembrane protein YP_924396.1 PFAM: isochorismatase hydrolase; KEGG: eca:ECA2383 putative isochorismatase YP_924397.1 KEGG: mmc:Mmcs_2752 hypothetical protein YP_924398.1 PFAM: NUDIX hydrolase; KEGG: dar:Daro_3706 NUDIX hydrolase:thiamine monophosphate synthase YP_924400.1 KEGG: nfa:nfa6110 hypothetical protein YP_924401.1 KEGG: rha:RHA1_ro06668 possible helicase YP_924403.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV1735 putative ABC transporter permease protein YP_924404.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV1736 putative ABC transporter permease protein YP_924405.1 PFAM: extracellular solute-binding protein, family 1; KEGG: sma:SAV1737 putative ABC transporter binding protein YP_924406.1 KEGG: sma:SAV1738 putative ABC transporter ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase YP_924407.1 PFAM: polysaccharide deacetylase; KEGG: jan:Jann_2517 polysaccharide deacetylase YP_924408.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: mpa:MAP1053 hypothetical protein YP_924409.1 KEGG: nfa:nfa40670 putative translation initiation factor IF-2 YP_924410.1 PFAM: Saccharopine dehydrogenase; KEGG: mmc:Mmcs_4946 saccharopine dehydrogenase YP_924411.1 PFAM: aldehyde dehydrogenase; KEGG: rxy:Rxyl_2917 aldehyde dehydrogenase YP_924412.1 PFAM: Amidohydrolase 3; KEGG: rha:RHA1_ro00158 probable metal-dependant glycoprotease YP_924413.1 TIGRFAM: putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: mmc:Mmcs_1825 agmatinase, putative YP_924414.1 PFAM: aminotransferase class-III; KEGG: sma:SAV2612 putative aminotransferase YP_924415.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV2588 putative polyamine ABC-transporter integral membrane protein YP_924416.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV2589 putative polyamine ABC-transporter permease protein YP_924417.1 KEGG: sma:SAV2590 putative polyamine ABC-transporter ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase YP_924418.1 PFAM: extracellular solute-binding protein, family 1; KEGG: sma:SAV2591 putative ABC-transporter polyamine-binding lipoprotein YP_924419.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: fra:Francci3_3779 transcriptional regulator, AsnC family YP_924420.1 PFAM: FAD dependent oxidoreductase; KEGG: fal:FRAAL6023 hypothetical protein; putative signal peptide YP_924421.1 PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: sco:SCO6736 metallopeptidase YP_924422.1 PFAM: protein of unknown function RIO1; KEGG: eba:ebA56 RIO-type serine/threonine protein kinase YP_924423.1 KEGG: sma:SAV2616 hypothetical protein YP_924424.1 PFAM: metallophosphoesterase; KEGG: sma:SAV5405 hypothetical protein YP_924425.1 PFAM: glycosyl transferase, group 1; KEGG: fra:Francci3_1907 glycosyl transferase, group 1 YP_924426.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance YP_924428.1 PFAM: phosphatidate cytidylyltransferase; KEGG: tfu:Tfu_0680 phosphatidate cytidylyltransferase YP_924429.1 PFAM: ribosome recycling factor; KEGG: pac:PPA1518 ribosome recycling factor YP_924430.1 TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: rha:RHA1_ro06580 uridylate kinase YP_924431.1 TIGRFAM: translation elongation factor Ts; PFAM: ubiquitin-associated- domain-containing protein; elongation factor Ts; KEGG: mpa:MAP2955c elongation factor EF-Ts YP_924432.1 PFAM: ribosomal protein S2; KEGG: sco:SCO5624 30S ribosomal protein S2 YP_924433.1 PFAM: peptidase M23B; KEGG: sco:SCO5623 hypothetical protein YP_924434.1 PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: nfa:nfa41390 putative recombinase YP_924435.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: sma:SAV2631 putative DNA processing Smf-family protein YP_924436.1 KEGG: sco:SCO5603 magnesium chelatase family protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; SMART: AAA ATPase YP_924437.1 PFAM: protein of unknown function UPF0102; KEGG: sco:SCO5602 predicted endonuclease YP_924438.1 PFAM: major facilitator superfamily MFS_1; KEGG: cvi:CV1398 hypothetical protein YP_924439.1 KEGG: bxe:Bxe_A2791 predicted membrane protein YP_924440.1 PFAM: TadE family protein; KEGG: bam:Bamb_1401 TadE family protein YP_924441.1 KEGG: sma:SAV2634 hypothetical protein YP_924442.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_924443.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; KEGG: sco:SCO5597 putative signal peptidase I YP_924444.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_924445.1 KEGG: lxx:Lxx14850 tRNA-(guanine-N1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: GCN5-related N-acetyltransferase; tRNA (guanine-N1-)-methyltransferase YP_924446.1 TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: tfu:Tfu_0664 16S rRNA processing protein RimM YP_924447.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mbo:Mb0825c hypothetical protein YP_924448.1 KEGG: sma:SAV2643 hypothetical protein YP_924449.1 PFAM: ribosomal protein S16; KEGG: rha:RHA1_ro06535 30S ribosomal protein S16 YP_924450.1 PFAM: response regulator receiver; KEGG: sco:SCO3741 putative response regulator YP_924451.1 PFAM: amidohydrolase; KEGG: sma:SAV6403 hypothetical protein YP_924452.1 PFAM: glycoside hydrolase, family 3 domain protein; KEGG: sma:SAV2708 putative glycosyl hydrolase YP_924453.1 PFAM: ROK family protein; KEGG: sma:SAV2248 ROK-family transcriptional regulator YP_924454.1 KEGG: rha:RHA1_ro00122 hypothetical protein YP_924455.1 KEGG: sma:SAV2648 putative signal recognition particle; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54, G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase YP_924456.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; also involved in adenylylating and deadelnylyating GlnK YP_924457.1 PFAM: nitrogen regulatory protein P-II; KEGG: sco:SCO5584 nitrogen regulatory protein P-II YP_924458.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: rha:RHA1_ro06530 ammonium transporter YP_924459.1 KEGG: sco:SCO5580 putative prokaryotic docking protein; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase YP_924461.1 PFAM: thioesterase superfamily protein; KEGG: bur:Bcep18194_A4557 thioesterase superfamily YP_924462.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: sma:SAV2658 putative chromosome segregation protein YP_924463.1 PFAM: aminotransferase, class V; KEGG: hma:rrnAC1999 aminotransferase class V YP_924464.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: fra:Francci3_3430 putative transposase, IS891/IS1136/IS1341 YP_924465.1 KEGG: sco:SCO1931 hypothetical protein YP_924466.1 PFAM: FAD linked oxidase domain protein; KEGG: rha:RHA1_ro01589 probable glycolate oxidase FAD-linked subunit YP_924467.1 PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1; KEGG: sma:SAV6301 antibiotic transport protein YP_924469.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases YP_924470.1 PFAM: ribonuclease III; double-stranded RNA binding domain protein; KEGG: sma:SAV2665 putative ribonuclease III YP_924471.1 PFAM: protein of unknown function DUF177; KEGG: tfu:Tfu_0649 conserved hypothetical protein YP_924472.1 KEGG: rha:RHA1_ro06519 pantetheine-phosphate adenylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain; PFAM: cytidylyltransferase YP_924473.1 TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: tfu:Tfu_0647 conserved hypothetical protein 95 YP_924474.1 KEGG: sco:SCO5566 putative ATP-dependent DNA helicase; TIGRFAM: ATP-dependent DNA helicase RecG; PFAM: helicase domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like YP_924475.1 PFAM: Dak phosphatase; KEGG: sco:SCO5565 hypothetical protein YP_924476.1 PFAM: ribosomal protein L28; KEGG: sco:SCO5564 putative 50S ribosomal protein L28 YP_924477.1 catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP YP_924478.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: fal:FRAAL5817 hypothetical protein YP_924479.1 KEGG: tfu:Tfu_0641 hypothetical protein YP_924480.1 TIGRFAM: D-alanine--D-alanine ligase; PFAM: ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; D-alanine--D-alanine ligase domain protein; KEGG: sco:SCO5560 D-alanine-D-alanine ligase YP_924481.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: cgb:cg3086 putative L,L-cystathionine gamma-lyase YP_924482.1 PFAM: NADP oxidoreductase, coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE, N-terminal domain protein; KEGG: sma:SAV2680 putative glycerol-3-phosphate dehydrogenase, NAD(P)H-dependent YP_924483.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: sco:SCO5558 acyltransferase YP_924484.1 KEGG: sco:SCO5557a hypothetical protein YP_924485.1 PFAM: histone family protein DNA-binding protein; KEGG: mpa:MAP3024c HupB YP_924486.1 KEGG: rha:RHA1_ro06500 3-isopropylmalate dehydratase small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein YP_924487.1 TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: aconitate hydratase domain protein; KEGG: sco:SCO5553 3-isopropylmalate dehydratase large subunit YP_924488.1 PFAM: regulatory proteins, IclR; KEGG: sma:SAV2687 IclR-family transcriptional regulator YP_924489.1 KEGG: pat:Patl_3876 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase YP_924490.1 PFAM: helix-turn-helix- domain containing protein, AraC type; HhH-GPD family protein; Ada, metal-binding domain protein; AlkA domain protein; KEGG: sco:SCO6461 putative ADA-like regulatory protein YP_924491.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: sco:SCO3042 transcriptional regulator YP_924492.1 PFAM: Bile acid:sodium symporter; KEGG: rpe:RPE_3198 bile acid:sodium symporter YP_924493.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: sil:SPO0795 oxidoreductase, short chain dehydrogenase/reductase family YP_924494.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: rpe:RPE_3197 NAD-dependent epimerase/dehydratase YP_924495.1 PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: afu:AF2100 acetolactate synthase large subunit YP_924496.1 KEGG: mpa:MAP3677 hypothetical protein YP_924497.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pol:Bpro_2645 methyltransferase type 11 YP_924498.1 KEGG: fal:FRAAL0869 hypothetical protein YP_924499.1 PFAM: regulatory protein, LuxR; metal-dependent phosphohydrolase, HD sub domain; Bacterio-opsin activator, HTH domain protein; KEGG: rha:RHA1_ro06927 hypothetical protein YP_924500.1 TIGRFAM: uncharacterized enzyme; PFAM: glutamate--cysteine ligase, GCS2; KEGG: cef:CE2886 hypothetical protein YP_924501.1 KEGG: rxy:Rxyl_1168 peptidase M29, aminopeptidase II YP_924502.1 PFAM: carbohydrate kinase, FGGY; KEGG: rde:RD1_3760 xylulose kinase, putative YP_924503.1 PFAM: photosystem I assembly BtpA; KEGG: mmc:Mmcs_2423 photosystem I assembly BtpA YP_924504.1 PFAM: Dak phosphatase; KEGG: tfu:Tfu_1716 glycerone kinase YP_924505.1 PFAM: Dak kinase; KEGG: tfu:Tfu_1716 glycerone kinase YP_924506.1 PFAM: inner-membrane translocator; KEGG: atc:AGR_L_81 putative permease component of transport system, probably ribose specific YP_924507.1 PFAM: inner-membrane translocator; KEGG: atc:AGR_L_83 putative permease component of transport system, probably ribose specific YP_924508.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: atc:AGR_L_85 ABC transporter ATP binding protein YP_924509.1 KEGG: bxe:Bxe_C1270 ABC sugar transporter, periplasmic ligand binding protein YP_924510.1 PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: rha:RHA1_ro11060 transcriptional regulator, DeoR family YP_924511.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pto:PTO1249 alcohol dehydrogenase YP_924512.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: gvi:glr1554 probable serine proteinase YP_924513.1 KEGG: sus:Acid_1047 conserved hypothetical cytosolic protein YP_924514.1 TIGRFAM: prevent-host-death family protein; KEGG: fra:Francci3_0142 prevent-host-death protein YP_924515.1 PFAM: PilT protein domain protein; KEGG: fra:Francci3_0141 PilT protein-like YP_924516.1 PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: rxy:Rxyl_1758 alcohol dehydrogenase, zinc-binding protein YP_924517.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rxy:Rxyl_0122 methyltransferase type 11 YP_924518.1 PFAM: DoxX family protein; KEGG: mxa:MXAN_6975 DoxX family protein YP_924519.1 KEGG: sru:SRU_0851 hypothetical protein YP_924520.1 SMART: helix-turn-helix domain protein YP_924521.1 KEGG: mbo:Mb0764c hypothetical protein YP_924522.1 KEGG: mmc:Mmcs_4828 phage integrase YP_924523.1 KEGG: cdi:DIP0182 putative phage integrase YP_924524.1 PFAM: Abortive infection protein; KEGG: pac:PPA1365 conserved protein YyaK YP_924525.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_924526.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: pac:PPA1366 putative 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase YP_924527.1 PFAM: peptidase S45, penicillin amidase; KEGG: dra:DRA0255 aculeacin A acylase YP_924528.1 PFAM: MOSC domain containing protein; KEGG: rpe:RPE_1637 MOSC domain containing protein YP_924529.1 KEGG: nfa:nfa25070 hypothetical protein YP_924530.1 PFAM: CoA-binding domain protein; KEGG: sus:Acid_0397 CoA-binding protein YP_924531.1 PFAM: Excalibur domain protein; KEGG: bld:BLi04157 YhjA YP_924532.1 PFAM: dienelactone hydrolase; KEGG: ret:RHE_CH02612 hypothetical protein YP_924533.1 KEGG: bcn:Bcen_5567 hypothetical protein YP_924534.1 PFAM: peptidase M23B; KEGG: syf:Synpcc7942_0344 probable peptidase YP_924535.1 KEGG: dra:DR0234 hypothetical protein YP_924536.1 PFAM: pentapeptide repeat protein; KEGG: fal:FRAAL1624 hypothetical protein; putative pentapeptide repeat domain YP_924537.1 PFAM: regulatory protein, TetR; Tetracyclin repressor domain protein; KEGG: mmc:Mmcs_3074 transcriptional regulator, TetR family YP_924538.1 PFAM: BioY protein; KEGG: cef:CE1851 putative biotin synthase YP_924539.1 PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: cjk:jk1119 ABC-type cobalt transport system ATPase component YP_924540.1 PFAM: cobalt transport protein; KEGG: rha:RHA1_ro05259 hypothetical protein YP_924541.1 KEGG: rha:RHA1_ro04234 possible transcriptional regulator YP_924542.1 KEGG: rha:RHA1_ro04235 possible membrane protein YP_924543.1 PFAM: GTP cyclohydrolase I; KEGG: nfa:nfa31470 putative GTP cyclohydrolase I YP_924544.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: sco:SCO7117 ferredoxin reductase YP_924545.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: fal:FRAAL2466 putative short chain dehydrogenase YP_924546.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mmc:Mmcs_0265 GCN5-related N-acetyltransferase YP_924547.1 PFAM: Amidase; KEGG: tfu:Tfu_2207 amidase YP_924548.1 PFAM: NADPH-dependent FMN reductase; KEGG: sma:SAV7045 reductase YP_924549.1 PFAM: regulatory protein, TetR; KEGG: rha:RHA1_ro06435 possible transcriptional regulator, TetR family YP_924551.1 PFAM: aminotransferase, class V; Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: sth:STH3269 arginine/lysine/ornithine decarboxylase YP_924552.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: sru:SRU_2799 acetylornithine deacetylase YP_924553.1 KEGG: sco:SCO5529 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain YP_924554.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: tfu:Tfu_0592 tyrosine protein kinase:serine/threonine protein kinase YP_924555.1 KEGG: xcb:XC_3380 branched-chain amino acid aminotransferase; TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase, class IV YP_924556.1 PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: sco:SCO5522 3-isopropylmalate dehydrogenase YP_924557.1 KEGG: dra:DR0603 cytidine/deoxycytidylate deaminase/NUDIX/methyltransferase domains protein YP_924558.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mmc:Mmcs_1188 methyltransferase type 11 YP_924559.1 KEGG: nfa:nfa32370 hypothetical protein YP_924560.1 PFAM: protein of unknown function DUF161; KEGG: sco:SCO1418 integral membrane protein YP_924561.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: rha:RHA1_ro05556 transcriptional regulator/aminotransferase YP_924562.1 PFAM: regulatory protein, MarR; KEGG: fal:FRAAL1706 putative MarR-family transcriptional regulator YP_924563.1 PFAM: luciferase family protein; KEGG: rxy:Rxyl_3088 luciferase-like protein YP_924564.1 PFAM: FAD linked oxidase domain protein; KEGG: rxy:Rxyl_3087 FAD linked oxidase-like protein YP_924565.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: mpa:MAP3628c hypothetical protein YP_924566.1 PFAM: purine catabolism PurC domain protein; KEGG: mmc:Mmcs_5287 transcriptional regulator, CdaR YP_924567.1 PFAM: amino acid permease-associated region; KEGG: mmc:Mmcs_5286 amino acid permease-associated region YP_924568.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: mmc:Mmcs_5285 short-chain dehydrogenase/reductase SDR YP_924569.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: mmc:Mmcs_5284 short-chain dehydrogenase/reductase SDR YP_924570.1 TIGRFAM: putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: mmc:Mmcs_5283 agmatinase, putative YP_924571.1 PFAM: polysaccharide deacetylase; KEGG: mmc:Mmcs_2257 polysaccharide deacetylase YP_924572.1 PFAM: glycoside hydrolase, family 3 domain protein; KEGG: rxy:Rxyl_0629 beta-N-acetylhexosaminidase YP_924573.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_924574.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV1689 ABC transporter ATP-binding protein YP_924575.1 KEGG: lxx:Lxx16280 putative iron-dependent peroxidase YP_924576.1 PFAM: iron permease FTR1; KEGG: sco:SCO2277 high-affinity iron transporter YP_924577.1 PFAM: DSBA oxidoreductase; KEGG: sco:SCO1869 hypothetical protein YP_924578.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_924579.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_924580.1 acetolactate synthase large subunit; catalyzes the formation of 2-acetolactate from pyruvate YP_924581.1 PFAM: transcriptional coactivator/pterin dehydratase; KEGG: cef:CE0476 putative pterin-4-alpha-carbinolamine dehydratase YP_924582.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pol:Bpro_0156 glyoxalase/bleomycin resistance protein/dioxygenase YP_924583.1 KEGG: rha:RHA1_ro04002 hypothetical protein YP_924584.1 PFAM: aminotransferase, class V; KEGG: rha:RHA1_ro01800 kynureninase YP_924585.1 TIGRFAM: xylulokinase; PFAM: carbohydrate kinase, FGGY; KEGG: rha:RHA1_ro02812 probable xylulokinase YP_924586.1 PFAM: Aldose 1-epimerase; KEGG: tfu:Tfu_1083 putative aldose-1-epimerase YP_924587.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_924588.1 KEGG: rme:Rmet_0169 phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1 YP_924589.1 PFAM: thiamine monophosphate synthase; KEGG: pca:Pcar_0607 thiamine-phosphate pyrophosphorylase YP_924590.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate YP_924591.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: sma:SAV6094 thiamine biosynthesis ThiS YP_924592.1 TIGRFAM: glycine oxidase ThiO; PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sco:SCO2107 putative oxidoreductase YP_924593.1 KEGG: dde:Dde_1379 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase YP_924594.1 TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase; KEGG: fra:Francci3_2878 Cob(II)yrinic acid a,c-diamide reductase YP_924595.1 TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: nfa:nfa50340 putative methyltransferase YP_924596.1 TIGRFAM: precorrin-3B C17-methyltransferase; precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: tfu:Tfu_0316 precorrin-3B C17-methyltransferase region:precorrin-2 C20-methyltransferase YP_924598.1 KEGG: tfu:Tfu_0318 cobalamin biosynthesis protein CobG, precorrin-3B synthase YP_924599.1 TIGRFAM: dethiobiotin synthase; KEGG: rha:RHA1_ro01053 dethiobiotin synthetase YP_924600.1 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine YP_924601.1 TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: sco:SCO1245 adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_924602.1 catalyzes the formation of biotin from dethiobiotin and sulfur 2 S-adenosyl-L-methionine YP_924603.1 PFAM: Berberine/berberine domain protein; KEGG: eba:ebA6736 probable FAD/FMN-containing oxidoreductase YP_924604.1 PFAM: Asp/Glu racemase; KEGG: dar:Daro_1336 hydantoin racemase YP_924606.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_924607.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pac:PPA1107 haloacid dehalogenase-like hydrolase YP_924608.1 PFAM: glycoside hydrolase, family 65 domain protein; glycoside hydrolase family 65, central catalytic; glycoside hydrolase family 65 domain protein; KEGG: pac:PPA1108 trehalose phosphorylase YP_924609.1 KEGG: bcz:BCZK2308 hypothetical protein YP_924610.1 KEGG: nfa:nfa51460 hypothetical protein YP_924611.1 KEGG: rha:RHA1_ro02402 hypothetical protein YP_924612.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: tfu:Tfu_1994 putative integral membrane protein YP_924614.1 PFAM: alpha/beta hydrolase fold; KEGG: ade:Adeh_1736 alpha/beta hydrolase fold-1 YP_924615.1 PFAM: NHL repeat containing protein; glucose sorbosone dehydrogenase; KEGG: rha:RHA1_ro02468 possible glucose dehydrogenase YP_924616.1 KEGG: sco:SCO2325 integral membrane protein YP_924617.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV5847 putative ABC transporter ATP-binding subunit YP_924618.1 PFAM: cobalt transport protein; KEGG: sma:SAV5848 integral membrane protein YP_924619.1 KEGG: syw:SYNW2303 hypothetical protein YP_924620.1 KEGG: xac:XAC3546 outer membrane protein YP_924621.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: mtc:MT3905 IS1557, transposase YP_924622.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_924623.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_924624.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase, C subunit; KEGG: tfu:Tfu_0605 glutamyl-tRNA(Gln) amidotransferase C subunit YP_924625.1 PFAM: aminotransferase, class V; KEGG: rha:RHA1_ro04390 probable cysteine desulfurase YP_924627.1 KEGG: mbo:Mb3039c DNA ligase; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation; SMART: NAD-dependent DNA ligase-like YP_924628.1 PFAM: regulatory protein, TetR; KEGG: sco:SCO3167 TetR-family transcriptional regulator YP_924629.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV3887 transmembrane efflux protein YP_924630.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: aba:Acid345_2316 peptidase C56, PfpI YP_924631.1 PFAM: Methionine synthase, vitamin-B12 independent; KEGG: tfu:Tfu_0602 hypothetical protein YP_924632.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_924633.1 PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sma:SAV2756 putative pyridoxal-phosphate-dependent aminotransferase YP_924634.1 KEGG: sco:SCO3789 integral membrane protein YP_924635.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_924636.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_924637.1 involved in the peptidyltransferase reaction during translation YP_924638.1 PFAM: ribosomal protein L21; KEGG: pac:PPA0827 50S ribosomal protein L21 YP_924639.1 TIGRFAM: ribonuclease, Rne/Rng family; SMART: RNA binding S1 domain protein; KEGG: sma:SAV5465 hypothetical protein YP_924640.1 KEGG: sma:SAV5464 hypothetical protein YP_924641.1 KEGG: mmc:Mmcs_2986 hypothetical protein YP_924642.1 PFAM: major facilitator superfamily MFS_1; KEGG: tfu:Tfu_1375 putative integral membrane transporter YP_924644.1 PFAM: CopG domain protein DNA-binding domain protein YP_924645.1 PFAM: NUDIX hydrolase; KEGG: mmc:Mmcs_4021 NUDIX hydrolase YP_924646.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sma:SAV5461 hypothetical protein YP_924648.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: fal:FRAAL1920 rod shape-determining membrane protein; cell elongation YP_924649.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: sma:SAV5458 penicillin-binding protein YP_924650.1 KEGG: sco:SCO2609 rod shape-determining protein YP_924651.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_924652.1 functions in MreBCD complex in some organisms YP_924653.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_924654.1 KEGG: nfa:nfa50150 hypothetical protein YP_924655.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: nfa:nfa50160 putative transcriptional regulator YP_924656.1 KEGG: sma:SAV5453 hypothetical protein YP_924657.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: sma:SAV5452 putative folylpolyglutamate synthase YP_924658.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rha:RHA1_ro04873 alcohol dehydrogenase YP_924659.1 PFAM: GCN5-related N-acetyltransferase; KEGG: nfa:nfa46710 putative acetyltransferase YP_924660.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_924661.1 KEGG: osa:4347106 Os09g0425200 YP_924662.1 binds and unfolds substrates as part of the ClpXP protease YP_924663.1 PFAM: peptidase S14, ClpP; KEGG: pac:PPA1572 ATP-dependent Clp protease proteolytic subunit 2 YP_924664.1 PFAM: peptidase S14, ClpP; KEGG: fra:Francci3_1205 endopeptidase Clp YP_924665.1 PFAM: cyclase/dehydrase; KEGG: mmc:Mmcs_4470 hypothetical protein YP_924666.1 PFAM: PGAP1 family protein; KEGG: rha:RHA1_ro05901 hypothetical protein YP_924667.1 TIGRFAM: trigger factor; PFAM: peptidylprolyl isomerase, FKBP-type; trigger factor, C-terminal domain protein; trigger factor, N-terminal domain; KEGG: pac:PPA1575 trigger factor (chaperone in protein export) YP_924668.1 PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sco:SCO2624 integral membrane protein YP_924669.1 PFAM: Formamidopyrimidine-DNA glycolase; KEGG: sma:SAV5427 putative DNA repair hydrolase YP_924670.1 catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity YP_924671.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: mmc:Mmcs_0314 alpha/beta hydrolase fold-3 YP_924672.1 KEGG: tfu:Tfu_2606 alanine racemase region; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein YP_924673.1 KEGG: mmc:Mmcs_1929 D-alanine--D-alanine ligase; TIGRFAM: D-alanine--D-alanine ligase; PFAM: ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; protein of unknown function DUF201; D-alanine--D-alanine ligase domain protein YP_924674.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: lxx:Lxx14550 two-component system, sensor protein YP_924675.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: lxx:Lxx14540 two-component system, regulatory protein YP_924676.1 KEGG: sco:SCO3059 phosphoribosylaminoimidazole carboxylase catalytic subunit PurE; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_924677.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway YP_924678.1 PFAM: transcriptional regulator domain protein; KEGG: tfu:Tfu_2549 response regulator receiver YP_924679.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: sma:SAV3329 putative adenylate cyclase YP_924680.1 PFAM: membrane-flanked domain; KEGG: mpa:MAP3396c hypothetical protein YP_924681.1 TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; KEGG: sco:SCO4927 biotin apo-protein ligase YP_924682.1 PFAM: carboxyl transferase; KEGG: sco:SCO4926 propionyl-CoA carboxylase complex B subunit YP_924683.1 KEGG: fal:FRAAL1211 hypothetical protein YP_924684.1 PFAM: glycosyl transferase, family 2; KEGG: bcl:ABC2648 hypothetical protein YP_924686.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: mmc:Mmcs_2855 protein of unknown function DUF222 YP_924687.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cjk:jk1635 response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain YP_924688.1 PFAM: glycoside hydrolase, family 6; KEGG: mtc:MT0067 cellulase YP_924689.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro06636 multidrug resistance transporter, MFS superfamily YP_924690.1 PFAM: regulatory protein, TetR; KEGG: rha:RHA1_ro06635 transcriptional regulator, TetR family YP_924691.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: sco:SCO4923 putative septum formation protein YP_924692.1 PFAM: GtrA family protein; KEGG: lxx:Lxx04815 conserved putative integral membrane protein YP_924693.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: mpa:MAP2312c FadE19 YP_924694.1 PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: fra:Francci3_2007 FAD linked oxidase-like YP_924695.1 PFAM: regulatory protein, TetR; KEGG: cvi:CV4310 probable transcription regulator, TetR family YP_924696.1 KEGG: rha:RHA1_ro03056 hypothetical protein YP_924697.1 PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: tfu:Tfu_2557 putative acyl-CoA carboxylase, alpha subunit YP_924698.1 PFAM: membrane-flanked domain; KEGG: rha:RHA1_ro05943 hypothetical protein YP_924699.1 PFAM: membrane-flanked domain; KEGG: rha:RHA1_ro05942 hypothetical protein YP_924700.1 biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate YP_924701.1 TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: rha:RHA1_ro01572 benzoate membrane transport protein BenE YP_924702.1 TIGRFAM: SpoIID/LytB domain; PFAM: Stage II sporulation D domain protein; KEGG: rha:RHA1_ro04051 probable stage II sporulation protein YP_924703.1 TIGRFAM: SpoIID/LytB domain; PFAM: Stage II sporulation D domain protein; KEGG: rha:RHA1_ro04051 probable stage II sporulation protein YP_924704.1 catalyzes the reduction of nonspecific electron acceptors such as 2,6-dimethyl-1,4-benzoquinone and 5-hydroxy-1,4-naphthaquinone; does not have lipoamide dehydrogenase activity YP_924705.1 E3 component of alpha keto acid dehydrogenase complexes LpdC; forms a homodimer; binds one molecule of FAD monomer; catalyzes NAD+-dependent oxidation of dihydrolipoyl cofactors that are covalently linked to the E2 component YP_924706.1 KEGG: sco:SCO4918 hypothetical protein YP_924707.1 KEGG: rha:RHA1_ro05202 hypothetical protein YP_924708.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation YP_924709.1 PFAM: regulatory protein, TetR; KEGG: reu:Reut_B3897 regulatory protein, TetR YP_924710.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: tfu:Tfu_1140 hypothetical protein YP_924711.1 PFAM: aldo/keto reductase; KEGG: ade:Adeh_3036 aldo/keto reductase YP_924712.1 KEGG: sco:SCO1535 hypothetical protein YP_924713.1 PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: sma:SAV3343 putative phosphomannomutase YP_924715.1 KEGG: sco:SCO4914 putative deoxyribose-phosphate aldolase; TIGRFAM: deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase YP_924716.1 PFAM: aldehyde dehydrogenase; KEGG: sco:SCO4913 putative aldehyde dehydrogenase YP_924717.1 PFAM: aldehyde dehydrogenase; KEGG: sma:SAV3348 aldehyde dehydrogenase YP_924718.1 KEGG: sma:SAV3350 ATP-binding protein YP_924720.1 catalyzes the formation of inosine from adenosine YP_924721.1 PFAM: MaoC domain protein dehydratase; KEGG: sco:SCO1698 hypothetical protein YP_924722.1 Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate YP_924723.1 PFAM: cytochrome P450; KEGG: sco:SCO3636 putative cytochrome P-450 hydroxylase YP_924724.1 TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: lxx:Lxx04640 cytidine deaminase YP_924725.1 PFAM: inner-membrane translocator; KEGG: sma:SAV3367 putative sugar ABC transporter integral membrane protein YP_924726.1 PFAM: inner-membrane translocator; KEGG: sco:SCO4887 putative sugar ABC transporter integral membrane protein YP_924727.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO4886 putative sugar ABC transporter ATP-binding protein YP_924728.1 PFAM: basic membrane lipoprotein; KEGG: sco:SCO4885 putative lipoprotein YP_924729.1 KEGG: fra:Francci3_0694 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_924730.1 TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; KEGG: sma:SAV2041 putative lysine arginine ornithine transport system kinase YP_924731.1 MDM; functions in conversion of succinate to propionate YP_924732.1 PFAM: methylmalonyl-CoA mutase; KEGG: fal:FRAAL4951 methylmalonyl-CoA mutase small subunit (MCM-beta) YP_924734.1 catalyzes the fumarate and succinate interconversion; fumarate reductase is used under anaerobic conditions with glucose or glycerol as carbon source YP_924735.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_924736.1 KEGG: sco:SCO5108 integral membrane protein YP_924737.1 PFAM: glycosyl transferase, group 1; KEGG: mmc:Mmcs_0761 glycosyl transferase, group 1 YP_924738.1 TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family; KEGG: tfu:Tfu_2453 succinate dehydrogenase, cytochrome b558 subunit YP_924739.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_924740.1 TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: tfu:Tfu_2451 putative succinate dehydrogenase iron-sulfur protein YP_924741.1 KEGG: ter:Tery_3075 TPR repeat YP_924742.1 KEGG: gsu:GSU0970 hypothetical protein YP_924743.1 PFAM: 2',5' RNA ligase; KEGG: fal:FRAAL1171 putative secreted protein; putative phosphodiesterase domain YP_924744.1 TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase, class Ib; KEGG: nfa:nfa9360 putative tryptophanyl-tRNA synthetase YP_924745.1 PFAM: glycoside hydrolase, family 5; KEGG: pac:PPA2106 endoglycoceramidase YP_924746.1 PFAM: GCN5-related N-acetyltransferase; KEGG: fal:FRAAL1305 putative acetyltransferase YP_924747.1 PFAM: major facilitator superfamily MFS_1; KEGG: nfa:nfa9260 putative transporter YP_924748.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rha:RHA1_ro02614 short chain dehydrogenase YP_924749.1 PFAM: cytochrome P450; KEGG: rha:RHA1_ro05210 cytochrome P450 CYP136 YP_924750.1 KEGG: rha:RHA1_ro05211 possible transcriptional regulator, TetR family YP_924751.1 PFAM: transposase IS3/IS911 family protein; KEGG: cef:CE2618 putative transposase YP_924752.1 PFAM: Integrase, catalytic region; KEGG: cef:CE2619 putative transposase YP_924753.1 KEGG: sus:Acid_5880 TIR protein YP_924757.1 PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: sco:SCO3537 DNA-binding protein YP_924760.1 KEGG: mpa:MAP0443c hypothetical protein YP_924762.1 KEGG: sma:SAV7214 putative isocitrate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type YP_924763.1 TIGRFAM: MIP family channel proteins; PFAM: major intrinsic protein; KEGG: bcn:Bcen_2859 MIP family channel proteins YP_924765.1 catalyzes the oxidation of malate to oxaloacetate YP_924766.1 KEGG: nfa:nfa19270 hypothetical protein YP_924767.1 KEGG: nfa:nfa19270 hypothetical protein YP_924768.1 KEGG: tfu:Tfu_2569 putative integral membrane protein YP_924769.1 PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: tfu:Tfu_2571 methenyltetrahydrofolate cyclohydrolase YP_924770.1 involved in de novo purine biosynthesis YP_924771.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate YP_924772.1 KEGG: tfu:Tfu_2575 hypothetical protein YP_924773.1 KEGG: sma:SAV3318 putative RNA polymerase ECF-subfamily sigma factor YP_924774.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sco:SCO3709 putative ECF sigma factor YP_924776.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle YP_924777.1 catalyzes the interconversion of succinyl-CoA and succinate YP_924778.1 PFAM: cobalamin B12-binding domain protein; KEGG: sco:SCO4800 isobutiryl CoA mutase, small subunit YP_924779.1 PFAM: peptidase M23B; KEGG: sma:SAV4118 peptidase YP_924780.1 TIGRFAM: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase; KEGG: sco:SCO4797 putative ATP-dependent DNA helicase II YP_924782.1 PFAM: response regulator receiver; KEGG: gme:Gmet_3119 response regulator receiver domain protein (CheY-like) YP_924783.1 KEGG: aba:Acid345_1530 hypothetical protein YP_924784.1 PFAM: response regulator receiver; KEGG: aba:Acid345_1527 response regulator receiver protein, CheY YP_924785.1 PFAM: MCP methyltransferase, CheR-type; Methyltransferase type 12; KEGG: aba:Acid345_1529 MCP methyltransferase, CheR-type YP_924786.1 PFAM: CheB methylesterase; response regulator receiver; KEGG: aba:Acid345_1528 response regulator receiver modulated CheB methylesterase YP_924788.1 KEGG: aba:Acid345_1672 methyl-accepting chemotaxis sensory transducer YP_924789.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: aba:Acid345_1672 methyl-accepting chemotaxis sensory transducer YP_924790.1 PFAM: CheW domain protein; KEGG: aba:Acid345_1525 CheW protein YP_924791.1 PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: aba:Acid345_1524 CheA signal transduction histidine kinases YP_924792.1 KEGG: sma:SAV3466 integral membrane protein YP_924793.1 PFAM: regulatory protein, LuxR; response regulator receiver; Bacterio-opsin activator, HTH domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sma:SAV3470 two-component system response regulator YP_924794.1 PFAM: ATP-binding region, ATPase domain protein domain protein; PspC domain protein; KEGG: sma:SAV3471 two-component system sensor kinase YP_924795.1 PFAM: PspC domain protein; KEGG: sma:SAV3472 hypothetical protein YP_924797.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: tfu:Tfu_0591 hypothetical protein YP_924798.1 KEGG: mmc:Mmcs_2518 hypothetical protein YP_924799.1 PFAM: luciferase family protein; KEGG: tfu:Tfu_0980 putative oxidoreductase YP_924800.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: sco:SCO6787 probable acyl-CoA dehydrogenase YP_924802.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: ava:Ava_3981 NAD-dependent epimerase/dehydratase YP_924803.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: mmc:Mmcs_2855 protein of unknown function DUF222 YP_924804.1 PFAM: AMP-dependent synthetase and ligase; KEGG: sco:SCO6790 putative long chain fatty acid coA ligase YP_924805.1 PFAM: MMPL domain protein; KEGG: sma:SAV6879 putative membrane protein YP_924806.1 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase; catalyzes radical-mediated transfer of hydroxybenzyl group from 4-hydroxyphenylpyruvate (HPP) to 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione to form 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO); functions in F420 biosynthesis YP_924807.1 PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: cya:CYA_1981 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase family protein YP_924808.1 KEGG: rha:RHA1_ro02139 hypothetical protein YP_924810.1 TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: mmc:Mmcs_2993 phage SPO1 DNA polymerase-related protein YP_924811.1 KEGG: nfa:nfa43450 hypothetical protein YP_924812.1 KEGG: mmc:Mmcs_3326 luciferase-like protein YP_924814.1 KEGG: sco:SCO6495 dehydrogenase YP_924815.1 KEGG: mmc:Mmcs_3027 hypothetical protein YP_924816.1 KEGG: bcl:ABC0432 O-acetylhomoserine (thiol)-lyase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes YP_924817.1 KEGG: nha:Nham_0676 homoserine O-acetyltransferase; TIGRFAM: homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold YP_924818.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_924819.1 PFAM: glucose-methanol-choline oxidoreductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD dependent oxidoreductase; KEGG: nfa:nfa43500 putative cholesterol oxidase YP_924820.1 NADP-dependent semialdehyde dehydrogenase; part of alternative pathway from alpha-ketoglutarate to succinate YP_924821.1 PFAM: aldehyde dehydrogenase; KEGG: mpa:MAP2338 hypothetical protein YP_924822.1 KEGG: mbo:Mb3194 hypothetical protein YP_924823.1 PFAM: aminoglycoside phosphotransferase; KEGG: mmc:Mmcs_1560 aminoglycoside phosphotransferase YP_924824.1 PFAM: FAD dependent oxidoreductase; KEGG: tfu:Tfu_2593 glycerol-3-phosphate dehydrogenase YP_924825.1 KEGG: pac:PPA1185 putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) YP_924826.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: sma:SAV3194 hydrolase YP_924827.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_924829.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: sco:SCO1071 two component system sensor kinase YP_924830.1 PFAM: regulatory protein, LuxR; response regulator receiver; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sco:SCO6667 two-component regulator YP_924831.1 KEGG: bcn:Bcen_6533 outer membrane autotransporter barrel YP_924832.1 KEGG: sma:SAV5000 putative inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase YP_924833.1 TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: sma:SAV4992 putative class I heat-shock protein YP_924834.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_924835.1 KEGG: sco:SCO4758 hypothetical protein YP_924836.1 KEGG: cdi:DIP1163 hypothetical protein YP_924837.1 PFAM: beta-lactamase domain protein; KEGG: sco:SCO0740 hydrolase YP_924838.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sco:SCO0741 putative NAD/factor-dependent formaldehyde dehydrogenase YP_924840.1 KEGG: aba:Acid345_4298 2-nitropropane dioxygenase, NPD YP_924841.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sco:SCO4005 RNA polymerase sigma factor YP_924843.1 PFAM: MMPL domain protein; KEGG: rha:RHA1_ro04933 membrane efflux protein YP_924844.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_924845.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: rha:RHA1_ro03337 probable leucine-responsive regulator YP_924846.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: sco:SCO3362 hypothetical protein YP_924847.1 TIGRFAM: death-on-curing family protein; PFAM: Death-on-curing protein; KEGG: rha:RHA1_ro05890 hypothetical protein YP_924848.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: rha:RHA1_ro05889 hypothetical protein YP_924849.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: tfu:Tfu_2603 ribosomal-protein-alanine acetyltransferase YP_924850.1 PFAM: peptidase M22, glycoprotease; KEGG: sco:SCO4750 hypothetical protein YP_924851.1 PFAM: regulatory protein, LuxR; KEGG: sma:SAV6477 two-component system response regulator YP_924852.1 KEGG: sco:SCO6709 hypothetical protein YP_924854.1 PFAM: fatty acid desaturase; KEGG: rha:RHA1_ro01720 probable fatty acid desaturase YP_924855.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: nfa:nfa46020 putative oxidoreductase YP_924856.1 KEGG: sco:SCO6061 putative oxidoreductase; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B YP_924858.1 PFAM: Chlorite dismutase; KEGG: sma:SAV2221 hypothetical protein YP_924859.1 KEGG: sco:SCO6041 putative protoporphyrinogen oxidase; TIGRFAM: protoporphyrinogen oxidase; PFAM: amine oxidase; FAD dependent oxidoreductase YP_924860.1 KEGG: sma:SAV2224 lipoprotein YP_924861.1 KEGG: sco:SCO6031 uroporphyrinogen decarboxylase; TIGRFAM: uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D) YP_924862.1 KEGG: sma:SAV2229 hypothetical protein YP_924863.1 PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: sma:SAV2231 putative ribonuclease D YP_924864.1 KEGG: mmc:Mmcs_4377 hypothetical protein YP_924865.1 KEGG: sme:SMa1134 hypothetical protein YP_924866.1 PFAM: inositol monophosphatase; KEGG: tfu:Tfu_1943 inositol-1(or 4)-monophosphatase YP_924867.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: mmc:Mmcs_2417 ABC transporter related YP_924868.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mmc:Mmcs_2418 binding-protein-dependent transport systems inner membrane component YP_924869.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mmc:Mmcs_2419 binding-protein-dependent transport systems inner membrane component YP_924870.1 PFAM: extracellular solute-binding protein, family 1; KEGG: mmc:Mmcs_2420 extracellular solute-binding protein, family 1 YP_924871.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mmc:Mmcs_2421 short-chain dehydrogenase/reductase SDR YP_924872.1 PFAM: carbohydrate kinase, FGGY; KEGG: mmc:Mmcs_2422 carbohydrate kinase, FGGY YP_924873.1 PFAM: photosystem I assembly BtpA; KEGG: mmc:Mmcs_2423 photosystem I assembly BtpA YP_924874.1 PFAM: regulatory protein GntR, HTH; regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: mmc:Mmcs_2425 transcriptional regulator, DeoR family YP_924875.1 PFAM: extracellular solute-binding protein, family 1; KEGG: bcl:ABC3585 sugar ABC transporter substrate-binding protein YP_924877.1 KEGG: mpa:MAP2218 hypothetical protein YP_924878.1 KEGG: lxx:Lxx18480 hypothetical protein YP_924879.1 KEGG: sco:SCO4092 ATP-dependent helicase; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases-like YP_924880.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: rha:RHA1_ro05813 probable 3-oxosteroid 1-dehydrogenase YP_924882.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sma:SAV4198 putative two-component system response regulator YP_924883.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: sco:SCO4021 putative two component system histidine kinase YP_924884.1 PFAM: regulatory protein, TetR; KEGG: rha:RHA1_ro06009 probable transcriptional regulator, TetR family YP_924885.1 KEGG: nfa:nfa47010 putative monooxygenase YP_924886.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro06007 short chain dehydrogenase YP_924887.1 PFAM: protein of unknown function DUF1212; KEGG: rha:RHA1_ro04718 possible amino acid export carrier protein YP_924888.1 KEGG: sth:STH1763 hypothetical protein YP_924889.1 ATP-dependent carboxylate-amine ligase YP_924890.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_924891.1 KEGG: nfa:nfa53760 hypothetical protein YP_924892.1 PFAM: protein of unknown function RIO1; protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: lxx:Lxx00220 serine/threonine kinase YP_924893.1 PFAM: protein of unknown function UPF0089; KEGG: rha:RHA1_ro08645 hypothetical protein YP_924894.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: sat:SYN_01825 type III restriction-modification system methylation subunit YP_924895.1 PFAM: peptidase M10A and M12B, matrixin and adamalysin YP_924896.1 PFAM: peptidase S15; KEGG: nph:NP4164A hypothetical protein YP_924897.1 KEGG: sth:STH163 hypothetical protein; similar to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase YP_924899.1 PFAM: Uracil-DNA glycosylase superfamily; KEGG: rha:RHA1_ro05894 G/U mismatch-specific DNA glycosylase YP_924900.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: mca:MCA0612 UDP-glucose 4-epimerase YP_924902.1 KEGG: mmc:Mmcs_1337 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_924903.1 PFAM: protein of unknown function UPF0126; KEGG: mmc:Mmcs_0767 protein of unknown function UPF0126 YP_924904.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate YP_924905.1 TIGRFAM: glycogen synthase; PFAM: glycosyl transferase, group 1; KEGG: fal:FRAAL4552 putative glycosyl transferase YP_924907.1 KEGG: nfa:nfa29830 hypothetical protein YP_924908.1 PFAM: protein of unknown function DUF427; KEGG: sme:SMb21379 hypothetical protein YP_924909.1 KEGG: mmc:Mmcs_5328 carbohydrate kinase, thermoresistant glucokinase; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase YP_924910.1 KEGG: sco:SCO0635 hypothetical protein YP_924911.1 KEGG: nfa:nfa6820 putative phosphodiesterase YP_924913.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: mmc:Mmcs_5118 acyl-CoA dehydrogenase-like protein YP_924914.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rha:RHA1_ro01910 probable acyl CoA dehydrogenase YP_924916.1 KEGG: mmc:Mmcs_1345 protein of unknown function DUF909 YP_924917.1 KEGG: mmc:Mmcs_1344 putative EsaT-6 like protein 12 (hypothetical alanine rich protein) YP_924918.1 KEGG: nfa:nfa42710 hypothetical protein YP_924922.1 KEGG: fal:FRAAL2306 hypothetical protein YP_924923.1 KEGG: fra:Francci3_4441 conserved hypothetical protein YP_924924.1 KEGG: mpa:MAP3097 hypothetical protein YP_924926.1 KEGG: mmc:Mmcs_4460 hypothetical protein YP_924927.1 KEGG: fra:Francci3_2396 conserved hypothetical protein YP_924929.1 PFAM: regulatory protein, ArsR; KEGG: fra:Francci3_3239 transcriptional regulator, ArsR family YP_924930.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rpd:RPD_3422 methyltransferase type 11 YP_924931.1 TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: mmc:Mmcs_4522 arsenical-resistance protein YP_924932.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: sco:SCO6835 arsenate reductase YP_924933.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: rxy:Rxyl_0133 ATPase, P type cation/copper-transporter YP_924934.1 PFAM: Heavy metal transport/detoxification protein; KEGG: nfa:nfa49020 putative metal-binding protein YP_924935.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: mbo:Mb1796 hypothetical protein YP_924936.1 PFAM: aldo/keto reductase; KEGG: tfu:Tfu_1674 putative oxidoreductase YP_924938.1 KEGG: mpa:MAP1582c hypothetical protein YP_924939.1 KEGG: rha:RHA1_ro02506 possible suppressor protein DnaK YP_924940.1 RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA YP_924941.1 TIGRFAM: conserved repeat domain; PFAM: protein of unknown function DUF11; KEGG: rsp:RSP_3667 transcriptional regulator, AraC family with parallel beta-helix repeat YP_924942.1 KEGG: sma:SAV5466 hypothetical protein YP_924943.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine YP_924944.1 converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism YP_924945.1 KEGG: sma:SAV2604 secreted protein YP_924946.1 PFAM: sodium/hydrogen exchanger; KEGG: rha:RHA1_ro01570 Na+/H+ antiporter YP_924947.1 KEGG: sma:SAV5466 hypothetical protein YP_924949.1 KEGG: ade:Adeh_1681 PE-PGRS family protein YP_924950.1 PFAM: Excinuclease ABC, C subunit domain protein; KEGG: rpc:RPC_0376 excinuclease ABC, C subunit-like YP_924951.1 KEGG: mmc:Mmcs_4669 AAA ATPase containing von Willebrand factor type A (vWA) domain-like protein YP_924952.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sma:SAV4735 RNA polymerase ECF-subfamily sigma factor YP_924953.1 KEGG: hsa:93953 acidic repeat containing YP_924954.1 PFAM: fatty acid desaturase; KEGG: fal:FRAAL6454 linoleoyl-CoA desaturase (delta(6)-desaturase) YP_924955.1 PFAM: regulatory proteins, IclR; KEGG: sco:SCO7618 transcriptional regulator YP_924956.1 PFAM: dehydrogenase, E1 component; KEGG: tte:TTE0688 Thiamine pyrophosphate-dependent dehydrogenases, E1 component alpha subunit YP_924957.1 PFAM: Transketolase, central region; Transketolase domain protein; KEGG: tte:TTE0689 Thiamine pyrophosphate-dependent dehydrogenases, E1 component beta subunit YP_924958.1 PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: rsp:RSP_0964 dihydrolipoamide acetyltransferase YP_924959.1 TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: pol:Bpro_1180 40-residue YVTN beta-propeller repeat YP_924960.1 PFAM: prolipoprotein diacylglyceryl transferase; KEGG: ctc:CTC00251 prolipoprotein diacylglyceryl transferase YP_924961.1 PFAM: peptidase M23B; KEGG: sco:SCO4108 probable peptidase YP_924962.1 PFAM: ABC transporter related; YHS domain protein; SMART: AAA ATPase; TRASH domain protein; KEGG: rpe:RPE_3321 ABC transporter related YP_924963.1 PFAM: protein of unknown function DUF214; KEGG: dvu:DVUA0023 ABC transporter, permease protein, putative YP_924964.1 PFAM: protein of unknown function DUF214; KEGG: bpm:BURPS1710b_A1034 ABC transporter, permease protein YP_924966.1 KEGG: rha:RHA1_ro11211 hypothetical protein YP_924968.1 KEGG: fra:Francci3_2227 conserved hypothetical protein YP_924969.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rha:RHA1_ro11203 response regulator, two-component system YP_924970.1 PFAM: glutaredoxin 2 YP_924971.1 PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: rxy:Rxyl_1821 cytochrome c biogenesis protein, transmembrane region YP_924972.1 PFAM: Redoxin domain protein; KEGG: ttj:TTHA1300 bacterioferritin comigratory protein, thiol peroxidase, putative YP_924973.1 PFAM: protein of unknown function DUF156; KEGG: rha:RHA1_ro11208 hypothetical protein YP_924974.1 PFAM: Heavy metal transport/detoxification protein; KEGG: rha:RHA1_ro11206 Cu(2+)-exporting ATPase YP_924975.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: rha:RHA1_ro11213 probable copper resistance transporter, ATPase component YP_924976.1 PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; SMART: Animal peptidoglycan recognition protein PGRP; KEGG: sco:SCO3040 secreted protein YP_924977.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mpa:MAP0199 hypothetical protein YP_924980.1 PFAM: thiamineS protein; nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: pai:PAE2577 ferredoxin-nitrite reductase YP_924981.1 PFAM: phosphoadenosine phosphosulfate reductase; KEGG: pai:PAE2575 phosphoadenosine phosphosulfate reductase (PAPS reductase) YP_924987.1 KEGG: rha:RHA1_ro00019 hypothetical protein YP_924988.1 PFAM: protein of unknown function DUF1130; KEGG: rha:RHA1_ro08282 hypothetical protein YP_924990.1 KEGG: fra:Francci3_3745 superfamily I DNA and RNA helicases and helicase subunits-like YP_924991.1 KEGG: rxy:Rxyl_2373 membrane protein-like protein YP_924992.1 SMART: protein of unknown function SprT; KEGG: lxx:Lxx20670 hypothetical protein YP_924993.1 PFAM: ERCC4 domain protein; KEGG: mbo:Mb2558 hypothetical protein YP_924994.1 TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase, class V; KEGG: sco:SCO1054 aminotransferase YP_924995.1 KEGG: fal:FRAAL5342 hypothetical protein; putative DNA helicase II homolog YP_924996.1 PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sco:SCO2863 helicase YP_924997.1 PFAM: BRCT domain protein; Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: tfu:Tfu_0714 exonuclease YP_924998.1 catalyzes the reduction of ribonucleotides to deoxyribonucleotides; the rate-limiting step in dNTP synthesis YP_924999.1 PFAM: ATP-cone domain protein; KEGG: tfu:Tfu_2150 hypothetical protein YP_925000.1 PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: mmc:Mmcs_1281 RNA polymerase, sigma 28 subunit YP_925002.1 PFAM: Peptidoglycan-binding LysM; KEGG: fra:Francci3_3509 peptidoglycan-binding LysM YP_925003.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dar:Daro_1357 short-chain dehydrogenase/reductase SDR YP_925004.1 Represses a number of genes involved in the response to DNA damage YP_925005.1 KEGG: sco:SCO2807 integral membrane protein YP_925006.1 PFAM: Alkaline phosphatase; KEGG: sco:SCO2068 secreted alkaline phosphatase YP_925007.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: pgi:PG0126 type I phosphodiesterase/nucleotide pyrophosphatase family protein YP_925009.1 KEGG: mxa:MXAN_6640 hypothetical protein YP_925010.1 KEGG: mxa:MXAN_6640 hypothetical protein YP_925011.1 SMART: helicase c2; DEAD-like helicases-like; KEGG: sma:SAV2464 putative ATP-dependent helicase YP_925013.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sma:SAV5250 two-component system response regulator YP_925014.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: sco:SCO2800 two component system histidine kinase YP_925015.1 KEGG: cef:CE0820 hypothetical protein YP_925016.1 PFAM: ApbE family lipoprotein; KEGG: fal:FRAAL3949 putative thiamine biosynthesis lipoprotein, ApbE-like YP_925017.1 PFAM: Ferric reductase domain protein transmembrane component, N-terminal domain; KEGG: fra:Francci3_2586 putative integral membrane protein YP_925018.1 PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: fra:Francci3_2587 respiratory-chain NADH dehydrogenase domain, 51 kDa subunit YP_925019.1 KEGG: fra:Francci3_2588 hypothetical protein YP_925021.1 PFAM: alpha/beta hydrolase fold; KEGG: sma:SAV5711 hydrolase YP_925022.1 PFAM: GTP-binding protein, HSR1-related; KEGG: sma:SAV2470 putative ATP/GTP-binding protein YP_925023.1 PFAM: FAD dependent oxidoreductase; glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein, C-terminal barrel; KEGG: sit:TM1040_0434 FAD dependent oxidoreductase YP_925024.1 KEGG: dge:Dgeo_2867 phosphoribulokinase/uridine kinase YP_925025.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: tfu:Tfu_0275 putative short chain dehydrogenase YP_925026.1 PFAM: diaminopimelate epimerase; KEGG: sma:SAV2473 putative diaminopimelate epimerase YP_925027.1 KEGG: mmc:Mmcs_0215 bifunctional deaminase-reductase-like protein YP_925028.1 KEGG: sco:SCO5791 putative tRNA delta(2)-isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase YP_925029.1 PFAM: NUDIX hydrolase; KEGG: fra:Francci3_2547 NUDIX hydrolase YP_925032.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_925033.1 KEGG: rha:RHA1_ro05927 hypothetical protein YP_925034.1 PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: sco:SCO4428 putative secreted protein YP_925035.1 KEGG: abo:ABO_1590 hypothetical protein YP_925036.1 PFAM: PASTA domain containing protein YP_925037.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sma:SAV3570 putative trans-aconitate methyltransferase YP_925038.1 PFAM: regulatory protein, MarR; KEGG: sco:SCO3133 MarR-family regulator YP_925039.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tfu:Tfu_0409 ABC transporter, ATP-binding subunit YP_925040.1 catalyzes the phosphorylation of 4-diphosphocytidyl-2-C-methyl-D-erythritol in the nonmevalonate pathway of isoprenoid biosynthesis YP_925041.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_925042.1 PFAM: protein of unknown function DUF348; Transglycosylase domain protein; G5 domain protein; KEGG: nfa:nfa49040 hypothetical protein YP_925043.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: sco:SCO3151 putative deoxyribonuclease YP_925044.1 PFAM: alpha/beta hydrolase fold; KEGG: rha:RHA1_ro01528 possible epoxide hydrolase YP_925045.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: sma:SAV3591 putative tetrapyrrole methylase YP_925046.1 PFAM: glycosyl transferase, family 39; KEGG: pac:PPA0523 putative dolichyl-phosphate-mannose-protein mannosyltransferase YP_925047.1 PFAM: regulatory protein, TetR; KEGG: nfa:nfa34140 putative transcriptional regulator YP_925048.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_925049.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sco:SCO1692 oxidoreductase YP_925050.1 PFAM: aminoglycoside phosphotransferase; KEGG: nfa:nfa34090 putative phosphotransferase YP_925051.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: nfa:nfa34080 putative acyl-CoA dehydrogenase YP_925052.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: bur:Bcep18194_C6777 lipolytic enzyme YP_925053.1 PFAM: DGPFAETKE family protein; KEGG: sco:SCO4453 hypothetical protein YP_925054.1 PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: sco:SCO4452 RNA polymerase sigma factor YP_925055.1 PFAM: putative RNA methylase; methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: pac:PPA1810 hypothetical protein YP_925056.1 KEGG: tfu:Tfu_2616 tRNA pseudouridine synthase; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase YP_925057.1 PFAM: PfkB domain protein; KEGG: rha:RHA1_ro02811 fructokinase YP_925058.1 PFAM: regulatory protein GntR, HTH; KEGG: nfa:nfa49100 putative transcriptional regulator YP_925059.1 PFAM: ribosomal protein L17; KEGG: mmc:Mmcs_1114 ribosomal protein L17 YP_925060.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_925061.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_925062.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_925063.2 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_925064.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif YP_925065.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_925066.1 PFAM: luciferase family protein; KEGG: mpa:MAP2513c hypothetical protein YP_925067.1 PFAM: Integral membrane protein TerC; KEGG: mmc:Mmcs_4785 integral membrane protein TerC YP_925068.1 KEGG: fal:FRAAL1104 methionine aminopeptidase C (MAP) (peptidase M); TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24 YP_925069.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_925070.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_925071.1 late assembly protein YP_925072.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_925073.1 TIGRFAM: ribosomal protein S5; PFAM: ribosomal protein S5 domain protein; Ribosomal protein S5-like; KEGG: sco:SCO4719 30S ribosomal protein S5 YP_925074.1 TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: pac:PPA1845 50S ribosomal protein L18 YP_925075.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_925076.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_925077.1 PFAM: ribosomal protein S14; KEGG: pac:PPA1849 30S ribosomal protein S14 YP_925078.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_925079.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_925080.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_925081.1 PFAM: ribosomal protein S17; KEGG: sma:SAV4935 putative ribosomal protein S17 YP_925082.1 PFAM: ribosomal protein L29; KEGG: cdi:DIP0481 50S ribosomal protein L29 YP_925083.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_925084.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_925085.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_925086.1 TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; KEGG: pac:PPA1859 30S ribosomal protein S19 YP_925087.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_925088.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_925089.1 PFAM: ribosomal protein L4/L1e; KEGG: fal:FRAAL1082 50S ribosomal protein L4 YP_925090.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_925091.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_925092.1 KEGG: mtc:MT3791 hypothetical protein YP_925093.1 KEGG: sco:SCO3016 integral membrane protein YP_925094.1 KEGG: sco:SCO3017 secreted protein YP_925095.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: sco:SCO3018 putative regulatory protein YP_925096.1 PFAM: protein of unknown function DUF58; KEGG: sma:SAV5057 hypothetical protein YP_925097.1 KEGG: sco:SCO3020 integral membrane protein YP_925098.1 PFAM: RDD domain containing protein; KEGG: mpa:MAP0356c hypothetical protein YP_925099.1 PFAM: extracellular solute-binding protein, family 1; KEGG: tfu:Tfu_2337 ABC-type glucosylglycerol transport system substrate-binding protein YP_925100.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tfu:Tfu_2338 ABC-type glucosylglycerol transport system permease protein YP_925101.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tfu:Tfu_2339 ABC-type glucosylglycerol transport system permease protein YP_925102.1 PFAM: glycoside hydrolase, family 1; KEGG: tth:TT_P0042 beta-glycosidase YP_925103.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: fra:Francci3_2164 transcriptional regulator, LacI family YP_925104.1 KEGG: pac:PPA1808 conserved methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: putative methyltransferase YP_925105.1 PFAM: transcription activator, effector binding; KEGG: cte:CT0179 hypothetical protein YP_925106.1 PFAM: aminotransferase class-III; KEGG: pae:PA5523 glutamate-1-semialdehyde 2,1-aminomutase, putative YP_925107.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_925108.1 TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; elongation factor G, domain IV; KEGG: fal:FRAAL1078 protein chain elongation factor EF-G, GTP-binding YP_925109.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_925110.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_925111.1 PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1; KEGG: bxe:Bxe_B2022 major facilitator superfamily (MFS) multidrug efflux pump YP_925112.1 PFAM: regulatory protein, MarR; KEGG: fra:Francci3_0086 transcriptional regulator, MarR family YP_925113.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: sma:SAV6386 putative hypoxanthine/guanine permease YP_925114.1 KEGG: sma:SAV3898 integral membrane protein YP_925115.1 KEGG: fal:FRAAL6731 hypothetical protein YP_925116.1 PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO4329 integral membrane protein YP_925117.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: pac:PPA0477 cold shock protein YP_925118.1 PFAM: ExsB family protein; Haloacid dehalogenase domain protein hydrolase; PP-loop domain protein; KEGG: ade:Adeh_1542 hypothetical protein YP_925119.1 KEGG: mes:Meso_0710 hypothetical protein YP_925120.1 KEGG: sma:SAV5466 hypothetical protein YP_925121.1 activates fatty acids by binding to coenzyme A YP_925122.1 KEGG: bja:blr0750 hypothetical protein YP_925123.1 PFAM: peptidase M6, immune inhibitor A; KEGG: ade:Adeh_0322 peptidase M6, immune inhibitor A YP_925124.1 PFAM: RDD domain containing protein; KEGG: lxx:Lxx12090 hypothetical protein YP_925125.1 PFAM: Forkhead-associated protein; KEGG: lxx:Lxx04220 hypothetical protein YP_925126.1 PFAM: protein phosphatase 2C domain protein; KEGG: lxx:Lxx12030 protein phosphatase YP_925127.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: sco:SCO1294 cystathionine gamma-synthase YP_925128.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: rha:RHA1_ro07274 transcriptional regulator, AsnC family YP_925129.1 KEGG: sma:SAV3911 hypothetical protein YP_925130.1 PFAM: protein of unknown function DUF1470; KEGG: sma:SAV2986 hypothetical protein YP_925131.1 PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sma:SAV3912 ATP-dependent DNA helicase YP_925132.1 PFAM: peptidase M23B; KEGG: sco:SCO4108 probable peptidase YP_925133.1 catalyzes the formation of L-tryptophan from indole and L-serine YP_925134.1 KEGG: sma:SAV2604 secreted protein YP_925135.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_925136.1 KEGG: mmc:Mmcs_4212 hypothetical protein YP_925138.1 PFAM: nuclear transport factor 2; KEGG: rha:RHA1_ro03609 steroid delta-isomerase YP_925139.1 KEGG: sma:SAV3919 hypothetical protein YP_925140.1 KEGG: sco:SCO4310 hypothetical protein YP_925141.1 PFAM: CutC family protein; KEGG: pac:PPA0471 putative copper homeostasis protein CutC YP_925142.1 KEGG: sma:SAV3922 hypothetical protein YP_925143.1 PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: pac:PPA0676 transcriptional regulator, GntR family YP_925144.1 PFAM: protein of unknown function DUF214; KEGG: fal:FRAAL2863 putative ABC transport system integral membrane protein YP_925145.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO3089 putative ABC transporter ATP-binding protein YP_925146.1 KEGG: sma:SAV1131 alkylated DNA repair protein YP_925147.1 PFAM: methyltransferase small; KEGG: mxa:MXAN_4908 putative protein methyltransferase HemK YP_925148.1 KEGG: sma:SAV7196 hypothetical protein YP_925149.1 PFAM: LemA family protein; KEGG: mmc:Mmcs_2382 LemA YP_925150.1 PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV4106 hypothetical protein YP_925151.1 PFAM: carbon monoxide dehydrogenase subunit G; KEGG: rxy:Rxyl_0120 carbon monoxide dehydrogenase subunit G YP_925152.1 PFAM: molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: rha:RHA1_ro04975 carbon monoxide dehydrogenase medium subunit YP_925153.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: rha:RHA1_ro04976 carbon monoxide dehydrogenase large subunit YP_925154.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rha:RHA1_ro04977 carbon monoxide dehydrogenase small subunit (ferredoxin) YP_925155.1 PFAM: transcriptional regulator domain protein; KEGG: nfa:nfa41070 hypothetical protein YP_925156.1 PFAM: PKD domain containing protein; KEGG: sde:Sde_3982 protein of unknown function DUF37 YP_925157.1 PFAM: protein of unknown function DUF182; KEGG: mmc:Mmcs_0488 protein of unknown function DUF182 YP_925158.1 PFAM: VWA containing CoxE family protein; SMART: von Willebrand factor, type A; KEGG: rha:RHA1_ro04978 hypothetical protein YP_925159.1 PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rha:RHA1_ro04979 probable ATPase, MoxR family YP_925160.1 KEGG: rha:RHA1_ro04499 hypothetical protein YP_925162.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: cdi:DIP0880 putative RNA polymerase sigma factor YP_925163.1 PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: rfr:Rfer_4140 C4-dicarboxylate transporter/malic acid transport protein YP_925164.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: pac:PPA0240 hypothetical protein YP_925165.1 PFAM: LexA DNA-binding domain protein; KEGG: mpa:MAP2725c hypothetical protein YP_925166.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_925167.1 PFAM: protein of unknown function DUF201; KEGG: pat:Patl_0408 hypothetical protein YP_925168.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: tfu:Tfu_0938 regulatory protein, LacI YP_925169.1 PFAM: lipolytic enzyme, G-D-S-L family; KEGG: sco:SCO3078 secreted protein YP_925170.1 PFAM: thiamineS protein; KEGG: tfu:Tfu_0227 hypothetical protein YP_925171.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_925172.1 KEGG: nfa:nfa56180 putative ATP-dependent protease; TIGRFAM: ATP-dependent protease La; PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: peptidase S16, lon domain protein; AAA ATPase YP_925173.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase; KEGG: sma:SAV3937 trehalose-6-phosphatase YP_925174.1 KEGG: rha:RHA1_ro02174 possible glycoprotein YP_925175.1 KEGG: mpa:MAP3919 hypothetical protein YP_925176.1 PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: sru:SRU_0347 oxidoreductase family, NAD-binding Rossmann fold domain protein YP_925177.1 KEGG: sco:SCO4598 two-component system sensor kinase YP_925178.1 PFAM: glycosyl transferase, family 20; KEGG: pac:PPA0961 alpha,alpha-trehalose-phosphate synthase YP_925179.1 PFAM: alpha/beta hydrolase fold; KEGG: rha:RHA1_ro04396 probable poly-beta-hydroxybutyrate polymerase YP_925180.1 PFAM: major facilitator superfamily MFS_1; KEGG: syg:sync_2195 putative GPH family sugar transporter YP_925181.1 PFAM: aminotransferase, class V; Pyridoxal-dependent decarboxylase; KEGG: sth:STH1274 putative sphingosine-1-phosphate lyase YP_925182.1 PFAM: PfkB domain protein; KEGG: rde:RD1_3878 sugar kinase, putative YP_925183.1 PFAM: regulatory protein, TetR; KEGG: tfu:Tfu_0143 similar to transcriptional regulator YP_925184.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: nfa:nfa30780 putative oxidoreductase YP_925185.1 KEGG: ade:Adeh_1681 PE-PGRS family protein YP_925186.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine YP_925187.1 PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: rha:RHA1_ro01018 hypothetical protein YP_925188.1 NADP-dependent semialdehyde dehydrogenase; part of alternative pathway from alpha-ketoglutarate to succinate YP_925189.1 PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: dra:DR0965 GMC oxidoreductase YP_925190.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal YP_925191.1 KEGG: bta:540183 similar to tyrosylprotein sulfotransferase 2 Pfam: DUF470 Sulfotransfer_1 YP_925192.1 PFAM: protein of unknown function DUF305; KEGG: nfa:nfa38100 hypothetical protein YP_925193.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: mmc:Mmcs_3395 short-chain dehydrogenase/reductase SDR YP_925194.1 KEGG: mmc:Mmcs_1152 hypothetical protein YP_925195.1 KEGG: pac:PPA0386 hypothetical protein YP_925196.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: mtc:MT3905 IS1557, transposase YP_925197.1 KEGG: sma:SAV6531 hypothetical protein YP_925198.1 KEGG: rno:315071 procollagen, type XXII, alpha 1 (predicted) YP_925199.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_1835 ABC transporter related YP_925200.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fal:FRAAL2623 hypothetical protein; putative membrane protein involved in branched-chain amino acid transport, ATP-binding YP_925201.1 PFAM: inner-membrane translocator; KEGG: fal:FRAAL3359 putative sulfate-transporting ATPase YP_925202.1 KEGG: rme:Rmet_5877 extracellular ligand-binding receptor YP_925203.1 PFAM: metallophosphoesterase; KEGG: swo:Swol_2226 hypothetical protein YP_925204.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; KEGG: mmc:Mmcs_4736 RNA methyltransferase TrmH, group 3 YP_925205.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_925206.1 KEGG: sma:SAV6915 hypothetical protein YP_925207.1 PFAM: oxidoreductase, molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: rha:RHA1_ro01563 probable sufite oxidase YP_925208.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate YP_925209.1 TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: fra:Francci3_0795 nitrite reductase (NAD(P)H) large subunit, NirD YP_925211.1 KEGG: cya:CYA_0495 hypothetical protein YP_925212.1 TIGRFAM: ethanolamine utilization protein EutJ family protein; PFAM: cell division protein FtsA; KEGG: dde:Dde_3275 ethanolamine utilization protein EutJ YP_925213.1 PFAM: protein of unknown function DUF861, cupin_3; Ethanolamine utilisation EutQ family protein; KEGG: ecj:JW2444 conserved hypothetical protein YP_925214.1 PFAM: microcompartments protein; KEGG: dsy:DSY4991 hypothetical protein YP_925215.1 KEGG: lin:lin1143 hypothetical protein YP_925216.1 PFAM: microcompartments protein; KEGG: dsy:DSY4965 hypothetical protein YP_925217.1 PFAM: Ethanolamine ammonia-lyase light chain; KEGG: dsy:DSY4961 hypothetical protein YP_925218.1 PFAM: Ethanolamine ammonia lyase large subunit; KEGG: ctc:CTC02176 ethanolamine ammonia-lyase heavy chain YP_925219.1 ethanolamine utilization protein EutA YP_925220.1 PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: rba:RB2581 probable ethanolamine utilization protein EutN YP_925221.1 TIGRFAM: ethanolamine transproter; PFAM: amino acid permease-associated region; KEGG: rxy:Rxyl_3197 ethanolamine permease YP_925222.1 PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: mta:Moth_2487 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_925223.1 KEGG: fra:Francci3_4254 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_925224.1 PFAM: transcription factor CarD; KEGG: pac:PPA0357 putative transcriptional regulator YP_925225.1 KEGG: fal:FRAAL6457 putative integral membrane protein YP_925227.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate YP_925228.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: pac:PPA0361 putative phosphate transport system protein YP_925229.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: sma:SAV3973 putative two-component system sensor kinase YP_925230.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sco:SCO4230 putative response regulator YP_925231.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: sco:SCO1704 integral membrane conserved hypothetical protein YP_925232.1 PFAM: ABC-1 domain protein; KEGG: xac:XAC0422 ABC transporter substrate binding protein YP_925233.1 KEGG: sco:SCO4205 hypothetical protein YP_925234.1 PFAM: glycosyl transferase, group 1; KEGG: sma:SAV4006 glycosyl transferase YP_925236.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sco:SCO3298 putative oxidoreductase YP_925239.1 TIGRFAM: aspartate racemase; PFAM: Asp/Glu racemase; KEGG: ccr:CC3278 aspartate racemase YP_925240.1 PFAM: peptidase M4, thermolysin; Peptidase M4, thermolysin; KEGG: bbr:BB2878 putative metalloprotease YP_925241.1 KEGG: cch:Cag_1235 hypothetical protein YP_925242.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: rha:RHA1_ro05058 hypothetical protein YP_925243.1 KEGG: cch:Cag_1235 hypothetical protein YP_925244.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: tfu:Tfu_2456 small GTP-binding protein domain:GTP-binding protein TypA YP_925245.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sfr:Sfri_3690 flavocytochrome c YP_925246.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: sco:SCO3051 acyl-CoA dehydrogenase YP_925247.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: mta:Moth_2304 GntR-like YP_925248.1 PFAM: MaoC domain protein dehydratase; KEGG: pol:Bpro_5294 MaoC-like dehydratase YP_925249.1 PFAM: luciferase family protein; KEGG: mmc:Mmcs_3213 luciferase-like protein YP_925250.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bxe:Bxe_A4084 putative L-carnitine dehydratase/bile acid-inducible protein F YP_925251.1 PFAM: MmgE/PrpD family protein; KEGG: bur:Bcep18194_B1168 MmgE/PrpD family protein YP_925252.1 PFAM: Endoribonuclease L-PSP; KEGG: bbr:BB1154 hypothetical protein YP_925253.1 KEGG: mpa:MAP1460 hypothetical protein YP_925254.1 PFAM: MaoC domain protein dehydratase; KEGG: deh:cbdb_A489 hypothetical protein YP_925255.1 KEGG: pol:Bpro_5279 thiolase YP_925256.1 PFAM: protein of unknown function DUF35; KEGG: rha:RHA1_ro05826 hypothetical protein YP_925257.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: bxe:Bxe_A4085 putative acyl-CoA dehydrogenase YP_925258.1 converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA YP_925259.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sfr:Sfri_2586 flavocytochrome c YP_925260.1 KEGG: ade:Adeh_0244 LigA YP_925261.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ctc:CTC00811 fumarate reductase flavoprotein subunit precursor YP_925263.1 PFAM: HpcH/HpaI aldolase; KEGG: rxy:Rxyl_0366 citryl-CoA lyase YP_925264.1 PFAM: major facilitator superfamily MFS_1; KEGG: fal:FRAAL0582 putative efflux membrane protein (partial match) YP_925265.1 PFAM: alpha/beta hydrolase fold; KEGG: hne:HNE_1214 hydrolase, alpha/beta fold family YP_925266.1 PFAM: extracellular solute-binding protein, family 5; KEGG: bcl:ABC1605 oligopeptide ABC transporter substrate-binding protein YP_925267.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: sco:SCO2032 hypothetical protein YP_925268.1 PFAM: cyclase family protein; KEGG: rxy:Rxyl_0367 putative cyclase YP_925269.1 PFAM: MmgE/PrpD family protein; KEGG: rxy:Rxyl_0368 MmgE/PrpD YP_925270.1 PFAM: amidohydrolase; KEGG: ana:alr5010 D-hydantoinase YP_925271.1 KEGG: pat:Patl_2766 alpha/beta hydrolase fold YP_925273.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sco:SCO2490 dehydrogenase (secreted protein) YP_925274.1 KEGG: ttj:TTHA0473 peptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase YP_925275.1 KEGG: bxe:Bxe_A0185 ABC dipeptide/oligopeptide/nickel transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase YP_925276.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC1242 oligopeptide ABC transporter permease YP_925277.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: psp:PSPPH_2785 ABC-transport protein, inner membrane component YP_925279.1 PFAM: regulatory proteins, IclR; KEGG: rxy:Rxyl_0364 transcriptional regulator, IclR family YP_925280.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rxy:Rxyl_0353 AMP-dependent synthetase and ligase YP_925281.1 KEGG: pat:Patl_3828 hypothetical protein YP_925283.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; KEGG: ava:Ava_4427 zinc-containing alcohol dehydrogenase superfamily YP_925284.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: mma:MM2279 N-ethylammeline chlorohydrolase YP_925286.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mta:Moth_2498 ABC transporter related YP_925287.1 PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: bpe:BP0620 branched-chain amino acid ABC transporter, permease protein YP_925288.1 PFAM: inner-membrane translocator; KEGG: bpa:BPP0593 putative branched-chain amino acid transport system permease protein YP_925289.1 PFAM: Extracellular ligand-binding receptor; KEGG: rso:RS01985 probable amino acid-binding periplasmic (pbp) ABC transporter protein YP_925290.1 PFAM: amidohydrolase; KEGG: aor:AO090001000163 atrazine chlorohydrolase/guanine deaminase Pfam: A_deaminase Amidohydro_3 Amidohydro_1 YP_925291.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: gme:Gmet_2224 enoyl-CoA hydratase/isomerase YP_925292.1 PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: pst:PSPTO_4243 UreA amidolyase-related protein YP_925293.1 PFAM: MaoC domain protein dehydratase; KEGG: tth:TTC0237 dehydrogenase YP_925294.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: fal:FRAAL2628 putative enoyl-CoA hydratase/isomerase, involved in phenylacetic acid degradation YP_925295.1 PFAM: regulatory protein, TetR; KEGG: rha:RHA1_ro02343 probable transcriptional regulator, TetR family YP_925296.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_0356 ABC transporter related YP_925297.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_0111 ABC transporter related YP_925298.1 PFAM: inner-membrane translocator; KEGG: tde:TDE2365 high-affinity branched-chain amino acid ABC transporter, permease protein YP_925299.1 PFAM: inner-membrane translocator; KEGG: bpa:BPP0593 putative branched-chain amino acid transport system permease protein YP_925300.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rxy:Rxyl_0353 AMP-dependent synthetase and ligase YP_925301.1 PFAM: Extracellular ligand-binding receptor; KEGG: bxe:Bxe_B1023 ABC branched chain amino acid family transporter, periplasmic ligand binding protein YP_925302.1 PFAM: beta-ketoacyl synthase; KEGG: cya:CYA_2873 3-oxoacyl-[acyl-carrier-protein] synthase II YP_925303.1 KEGG: ccr:CC2307 hypothetical protein YP_925304.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro04654 3-oxoacyl-[acyl-carrier-protein] reductase YP_925305.1 PFAM: AMP-dependent synthetase and ligase; KEGG: tfu:Tfu_1300 DitJ-like CoA ligase (AMP forming), possibly related to diterpenoid metabolism YP_925306.1 PFAM: inner-membrane translocator; KEGG: bbr:BB4292 branched-chain amino acid transport system permease YP_925307.1 PFAM: inner-membrane translocator; KEGG: gsu:GSU1732 branched-chain amino acid ABC transporter, permease protein YP_925308.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpe:RPE_3782 ABC transporter related YP_925309.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO7182 putative branched amino acid transport system ATP-binding protein YP_925310.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rha:RHA1_ro08152 probable fatty acid-CoA racemase YP_925311.1 PFAM: Extracellular ligand-binding receptor; KEGG: chy:CHY_2238 high affinity branched-chain amino acid ABC transporter, amino acid-binding protein YP_925312.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: fal:FRAAL3878 putative acyl-CoA dehydrogenase YP_925313.1 PFAM: aminoglycoside phosphotransferase; KEGG: rxy:Rxyl_2337 aminoglycoside phosphotransferase YP_925314.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: mpa:MAP3122 FadE1_2 YP_925315.1 KEGG: nfa:nfa22710 putative lipid-transfer protein YP_925316.1 PFAM: protein of unknown function DUF35; KEGG: mpa:MAP0797 hypothetical protein YP_925317.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: nfa:nfa25020 putative short chain dehydrogenase YP_925318.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rha:RHA1_ro07066 probable acyl-CoA dehydrogenase YP_925319.1 PFAM: MaoC domain protein dehydratase; KEGG: sma:SAV6603 hypothetical protein YP_925320.1 PFAM: carboxyl transferase; KEGG: ade:Adeh_0250 carboxyl transferase YP_925321.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rpa:RPA0464 putative long-chain fatty-acid-CoA ligase YP_925322.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: mmc:Mmcs_4067 2-nitropropane dioxygenase, NPD YP_925323.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_925324.1 KEGG: nfa:nfa27940 hypothetical protein YP_925325.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: tfu:Tfu_1259 enoyl-CoA hydratase/isomerase-like protein YP_925326.1 KEGG: rha:RHA1_ro01876 acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase YP_925327.1 KEGG: tfu:Tfu_2811 methylmalonyl-CoA mutase, N-terminal; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: ArgK protein; methylmalonyl-CoA mutase; cobalamin B12-binding domain protein YP_925328.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: mca:MCA1307 cytosine deaminase YP_925329.1 PFAM: inner-membrane translocator; KEGG: mlo:mll4174 sugar ABC transporter, permease protein, rbsC-2 YP_925330.1 PFAM: inner-membrane translocator; KEGG: sme:SMa2367 putative ABC transporter, permease YP_925331.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: jan:Jann_1303 ABC transporter related YP_925332.1 PFAM: basic membrane lipoprotein; KEGG: mlo:mll4178 hypothetical protein, contains weak similarity to membrane lipoprotein YP_925333.1 PFAM: purine catabolism PurC domain protein; KEGG: sco:SCO7033 regulatory protein YP_925334.1 KEGG: nfa:nfa27940 hypothetical protein YP_925336.1 KEGG: mpa:MAP2481c hypothetical protein YP_925337.1 KEGG: noc:Noca_0728 hypothetical protein YP_925338.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: tfu:Tfu_1316 hypothetical protein YP_925339.1 KEGG: tfu:Tfu_1315 hypothetical protein YP_925340.1 KEGG: tfu:Tfu_1314 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS YP_925341.1 PFAM: glycosyl transferase, family 2; KEGG: tfu:Tfu_1732 hypothetical protein YP_925342.1 PFAM: regulatory protein, TetR; KEGG: fal:FRAAL2897 putative transcription regulator TetR/AcrR family YP_925343.1 KEGG: fra:Francci3_3007 hypothetical protein YP_925344.1 PFAM: cell wall hydrolase/autolysin; KEGG: fra:Francci3_1357 cell wall hydrolase/autolysin YP_925345.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; KEGG: pac:PPA0069 UDP-glucose 4-epimerase YP_925350.1 KEGG: ath:At4g01985 expressed protein YP_925352.1 catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP YP_925353.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; sulphate transporter; KEGG: tfu:Tfu_0873 sulfate permease, SulP family YP_925354.1 PFAM: regulatory protein, MarR; regulatory protein, ArsR; KEGG: mmc:Mmcs_2643 transcriptional regulator, MarR family YP_925355.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sco:SCO7374 nitrate reductase NarB (fragment) YP_925356.1 KEGG: mpa:MAP4100c hypothetical protein YP_925357.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro08310 short chain dehydrogenase YP_925358.1 PFAM: FAD linked oxidase domain protein; KEGG: sco:SCO5966 putative oxidase YP_925359.1 catalyzes the formation of acetate from pyruvate YP_925360.1 PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: rha:RHA1_ro08313 probable mandalate racemase YP_925361.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: nfa:nfa35140 putative dehydrogenase YP_925362.1 PFAM: glycoside hydrolase 15-related; KEGG: tfu:Tfu_1345 hypothetical protein YP_925364.1 KEGG: blo:BL0495 narrowly conserved hypothetical protein YP_925365.1 TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: fra:Francci3_1307 GDP-mannose 4,6-dehydratase YP_925366.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: fal:FRAAL2056 GDP-D-mannose dehydratase, NAD(P)-binding (partial match) YP_925367.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: mpa:MAP0443c hypothetical protein YP_925368.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KR; KEGG: fal:FRAAL5661 dTDP-glucose 4,6-dehydratase transmembrane protein putative capsular polysaccharide biosynthesis protein YP_925369.1 PFAM: lipopolysaccharide biosynthesis; KEGG: fal:FRAAL5660 putative tyrosine-protein kinase YP_925370.1 PFAM: mannose-6-phosphate isomerase, type II; Cupin 2, conserved barrel domain protein; KEGG: rpe:RPE_3497 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YP_925371.1 KEGG: mpa:MAP3969 hypothetical protein YP_925372.1 PFAM: aldehyde dehydrogenase; KEGG: rha:RHA1_ro01994 probable succinate-semialdehyde dehydrogenase (NAD(P)+) YP_925373.1 KEGG: rha:RHA1_ro02904 possible fumarylacetoacetate hydrolase YP_925374.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mlo:mll8574 hypothetical protein YP_925375.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: gbe:GbCGDNIH1_1383 blasticidin-S deaminase YP_925376.1 PFAM: inner-membrane translocator; KEGG: rxy:Rxyl_0158 inner-membrane translocator YP_925377.1 PFAM: inner-membrane translocator; KEGG: cya:CYA_1582 carbohydrate ABC transporter-2 (CUT2) family, permease protein YP_925378.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rxy:Rxyl_0156 ABC transporter related YP_925379.1 PFAM: basic membrane lipoprotein; KEGG: rxy:Rxyl_0155 basic membrane lipoprotein YP_925380.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: rha:RHA1_ro02903 phosphoglycerate dehydrogenase YP_925381.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: rha:RHA1_ro02909 transcriptional regulator, GntR family YP_925382.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: fal:FRAAL3120 2-deoxy-D-gluconate 3-dehydrogenase (2-keto-3-deoxygluconate oxidoreductase) YP_925383.1 PFAM: aldehyde dehydrogenase; KEGG: rha:RHA1_ro03790 aldehyde dehydrogenase (NAD+) YP_925384.1 KEGG: rha:RHA1_ro02104 hypothetical protein YP_925385.1 PFAM: helix-turn-helix domain protein; KEGG: fal:FRAAL0956 putative DNA-binding protein (partial match) YP_925386.1 TIGRFAM: mannose-6-phosphate isomerase, class I; PFAM: mannose-6-phosphate isomerase, type I; KEGG: tfu:Tfu_0016 mannose-6-phosphate isomerase, type I YP_925387.1 TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: rha:RHA1_ro05444 GDP-mannose 4,6-dehydratase YP_925388.1 PFAM: L-asparaginase II; KEGG: sma:SAV4025 L-asparaginase II YP_925389.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; adenylylsulfate kinase; KEGG: tfu:Tfu_0425 adenylylsulfate kinase YP_925390.1 PFAM: protein of unknown function DUF81; KEGG: fal:FRAAL1625 membrane protein, putative (partial match) YP_925391.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_925392.1 KEGG: fal:FRAAL2109 ATP-sulfurylase, subunit 1 (ATP:sulfate adenylyltransferase); TIGRFAM: small GTP-binding protein; sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein YP_925393.1 KEGG: pac:PPA0134 putative acetyltransferase YP_925394.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pac:PPA0135 aspartate aminotransferase YP_925395.1 PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: pac:PPA0136 NAD-dependent dehydrogenase YP_925396.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; 6-phosphogluconate dehydrogenase, NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: pac:PPA0145 putative UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase YP_925397.1 KEGG: aba:Acid345_3309 membrane protein involved in the export of O-antigen and teichoic acid YP_925399.1 PFAM: glycosyl transferase, group 1; KEGG: tte:TTE0660 predicted glycosyltransferase YP_925400.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: ter:Tery_2252 methyltransferase type 11 YP_925401.1 PFAM: glycosyl transferase, group 1; KEGG: cvi:CV4119 probable glycosyltransferase YP_925402.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mmc:Mmcs_1869 methyltransferase type 11 YP_925403.1 PFAM: sugar transferase; KEGG: bth:BT0611 glycosyltransferase YP_925404.1 PFAM: aminotransferase, class V; DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: gka:GK3168 pleiotropic regulatory protein YP_925405.1 PFAM: Transketolase, central region; Transketolase domain protein; KEGG: lmf:LMOf2365_1054 transketolase, C-terminal subunit, putative YP_925406.1 PFAM: Transketolase domain protein; KEGG: tma:TM0954 transketolase, N-terminal subunit YP_925407.1 KEGG: sma:SAV951 dTDP-6-deoxy-L-hexose 3-O-methyltransferase YP_925408.1 KEGG: mmc:Mmcs_0947 hypothetical protein YP_925410.1 PFAM: protein of unknown function DUF849; KEGG: sth:STH64 hypothetical protein YP_925411.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_925412.1 KEGG: bld:BLi00800 hypothetical protein YP_925413.1 PFAM: protein of unknown function DUF1416; KEGG: fra:Francci3_0450 protein of unknown function DUF1416 YP_925414.1 PFAM: Rhodanese domain protein; KEGG: mmc:Mmcs_4529 thiosulfate sulfurtransferase YP_925415.1 KEGG: sma:SAV1484 hypothetical protein YP_925416.1 KEGG: fal:FRAAL0941 putative thioredoxin YP_925417.1 KEGG: lxx:Lxx09000 hypothetical protein YP_925418.1 PFAM: regulatory protein, MerR; KEGG: fal:FRAAL4032 putative chaperone locus transcriptional regulator, HspR YP_925419.1 PFAM: heat shock protein Hsp20; KEGG: rha:RHA1_ro08348 heat shock protein (18 KDa antigen-like protein) YP_925420.1 KEGG: ddi:DDB0204485 hypothetical protein YP_925421.1 TIGRFAM: peptidase S26B, signal peptidase; PFAM: peptidase S24, S26A and S26B; KEGG: tfu:Tfu_2961 peptidase S26B, eukaryotic signal peptidase YP_925422.1 KEGG: cef:CE1188 hypothetical protein YP_925423.1 PFAM: thiamineS protein; KEGG: fra:Francci3_0445 thiamine S YP_925424.1 PFAM: transcriptional regulator domain protein; KEGG: sco:SCO4159 transcriptional regulatory protein YP_925426.1 PFAM: MMPL domain protein; KEGG: fal:FRAAL1424 putative integral membrane export protein YP_925427.1 KEGG: sma:SAV1712 hypothetical protein YP_925428.1 PFAM: regulatory protein, TetR; KEGG: fra:Francci3_1551 transcriptional regulator, TetR family YP_925429.1 PFAM: regulatory protein, TetR; KEGG: cvi:CV1837 probable transcriptional regulator, TetR family YP_925430.1 KEGG: rpc:RPC_1203 dipeptidyl aminopeptidases/acylaminoacyl-peptidases-like YP_925431.1 PFAM: MMPL domain protein; KEGG: rha:RHA1_ro04933 membrane efflux protein YP_925432.1 PFAM: GCN5-related N-acetyltransferase; FR47 domain protein; KEGG: nfa:nfa5990 putative acetyltransferase YP_925434.1 PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: sma:SAV4028 hypothetical protein YP_925435.1 PFAM: ferric-uptake regulator; Penicillinase repressor; KEGG: sma:SAV4029 iron uptake regulatory protein YP_925436.1 KEGG: pac:PPA0347 hypothetical protein YP_925437.1 KEGG: fra:Francci3_0454 conserved hypothetical protein YP_925438.1 KEGG: tcr:503617.20 kinetoplast DNA-associated protein Pfam: DUF1682 HC2 TolA PROSITE: ALA_RICH GLU_RICH YP_925439.1 KEGG: rha:RHA1_ro04851 hypothetical protein YP_925440.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: mpa:MAP3006c LipN YP_925441.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate YP_925442.1 PFAM: protein of unknown function DUF47; KEGG: sco:SCO4137 hypothetical protein YP_925443.1 PFAM: phosphate transporter; KEGG: sma:SAV4076 putative low-affinity inorganic phosphate transporter YP_925444.1 KEGG: tfu:Tfu_2743 phosphate transport system permease protein 1; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_925445.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lxx:Lxx18440 ABC transporter, permease protein YP_925446.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lxx:Lxx18430 ABC transporter, permease protein YP_925447.1 TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: lxx:Lxx18420 phosphate porter YP_925448.1 PFAM: NUDIX hydrolase; Phosphoglycerate mutase; KEGG: pac:PPA0342 hypothetical protein YP_925450.1 KEGG: mmc:Mmcs_0096 hypothetical protein YP_925451.1 PFAM: protein of unknown function DUF156; KEGG: rha:RHA1_ro03538 hypothetical protein YP_925453.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: sco:SCO4505 cold shock protein YP_925454.1 KEGG: rha:RHA1_ro05296 cyanuric acid amidohydrolase YP_925455.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: ctc:CTC02477 putative carbon-monoxide dehydrogenase, large subunit YP_925456.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: chy:CHY_0691 2Fe-2S iron-sulfur cluster binding domain YP_925457.1 PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: sme:SMb20130 putative dehydrogenase protein YP_925458.1 KEGG: rha:RHA1_ro04368 hypothetical protein YP_925459.1 PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro04369 multidrug transport protein, MFS superfamily YP_925460.1 KEGG: rha:RHA1_ro04370 hypothetical protein YP_925461.1 PFAM: protein of unknown function DUF336; KEGG: rha:RHA1_ro04371 possible GlcG protein YP_925462.1 PFAM: Endoribonuclease L-PSP; KEGG: rha:RHA1_ro04378 hypothetical protein YP_925463.1 PFAM: gamma-glutamyltranspeptidase; KEGG: rha:RHA1_ro04377 probable gamma-glutamyltransferase YP_925464.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: rha:RHA1_ro04376 probable aromatic ring dioxygenase YP_925465.1 PFAM: aldehyde dehydrogenase; KEGG: rha:RHA1_ro04375 aldehyde dehydrogenase (NAD+) YP_925466.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rha:RHA1_ro04374 reductase YP_925467.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: rha:RHA1_ro04373 probable dioxygenase ferredoxin component YP_925468.1 KEGG: rha:RHA1_ro04372 possible coenzyme PQQ synthesis protein YP_925469.1 PFAM: protein of unknown function DUF1275; KEGG: bli:BL00156 conserved membrane protein YoaK YP_925471.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cef:CE0548 hypothetical protein YP_925472.1 PFAM: thioesterase superfamily protein; KEGG: mmc:Mmcs_2763 thioesterase superfamily YP_925473.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: fal:FRAAL1622 NADH dehydrogenase YP_925474.1 PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: sco:SCO0542 hypothetical regulatory protein YP_925475.1 PFAM: protein of unknown function DUF1025; KEGG: mpa:MAP0195c hypothetical protein YP_925476.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rha:RHA1_ro02304 probable glutaryl-CoA dehydrogenase YP_925477.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rha:RHA1_ro02631 possible butyryl-CoA dehydrogenase YP_925478.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: cef:CE0323 putative 3-hydroxybutyryl-CoA dehydrogenase YP_925479.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: cef:CE2776 putative 3-hydroxybutyryl-CoA dehydratase YP_925480.1 AliA; in Rhodopseudomonas palustris, this enzyme was found to act on 3-chlorobenzoate and allows the organism to grow on this substrate YP_925481.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: cef:CE2778 putative 2-hydroxycyclohexanecarboxyl-CoA dehyrogenase YP_925482.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: eba:ebA1959 cyclohexanecarboxyl-CoA dehydrogenase YP_925483.1 TIGRFAM: naphthoate synthase; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rha:RHA1_ro02630 probable naphthoate synthase YP_925484.1 PFAM: regulatory protein, TetR; KEGG: rha:RHA1_ro02626 transcriptional regulator YP_925486.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: sso:SSO1764 hypothetical protein YP_925487.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mpa:MAP2726c FdxA YP_925488.1 KEGG: bba:Bd1520 hypothetical protein YP_925489.1 KEGG: rha:RHA1_ro08261 possible transcriptional regulator, MarR family YP_925490.1 TIGRFAM: serine O-acetyltransferase; KEGG: pfo:Pfl_4614 serine O-acetyltransferase YP_925491.1 TIGRFAM: cysteine synthases; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: mpa:MAP2123 cysteine synthase YP_925493.1 KEGG: mmc:Mmcs_3642 PE-PGRS family protein YP_925494.1 KEGG: cps:CPS_4816 hypothetical protein YP_925495.1 KEGG: cya:CYA_2836 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_925497.1 PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; KEGG: sma:SAV4132 putative valine dehydrogenase (NADP+) YP_925498.1 KEGG: mbo:Mb0833c hypothetical protein YP_925499.1 KEGG: sco:SCO4087 phosphoribosylformylglycinamidine cyclo-ligase; TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein YP_925500.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_925501.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: GAF domain protein; KEGG: sth:STH843 two-component sensor histidine kinase YP_925502.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: ava:Ava_2239 adenylate/guanylate cyclase YP_925503.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: mmc:Mmcs_3645 peptidase M20 YP_925504.1 KEGG: tfu:Tfu_2746 hypothetical protein YP_925505.1 PFAM: regulatory protein, ArsR; KEGG: sma:SAV5143 ArsR-family transcriptional regulator YP_925506.1 PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV3640 multidrug resistance protein YP_925507.1 PFAM: protein of unknown function UPF0074; Helix-turn-helix, type 11 domain protein; KEGG: fal:FRAAL3900 putative DeoR-family transcriptional regulator YP_925509.1 KEGG: mxa:MXAN_0913 hypothetical protein YP_925510.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_925511.1 PFAM: regulatory protein, TetR; KEGG: sma:SAV6352 TetR-family transcriptional regulator YP_925512.1 PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV6351 transmembrane efflux protein YP_925514.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: sma:SAV6085 hypothetical protein YP_925515.1 KEGG: lxx:Lxx22990 membrane protein YP_925516.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_925517.1 TIGRFAM: phosphoribosylformylglycinamidine synthase, purS; PFAM: phosphoribosylformylglycinamidine synthetase PurS; KEGG: sma:SAV4140 phosphoribosylformylglycinamidine synthase YP_925518.1 KEGG: pac:PPA0648 hypothetical protein YP_925519.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rha:RHA1_ro03779 long-chain-fatty-acid--CoA ligase YP_925521.1 KEGG: sma:SAV4146 putative phosphoribosylaminoimidazole-succinocar boxamide synthetase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase YP_925522.1 KEGG: sma:SAV48 hypothetical protein YP_925523.1 PFAM: acylphosphatase; KEGG: tko:TK2031 acylphosphatase YP_925524.1 PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO0680 transmembrane efflux protein YP_925525.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_925526.1 KEGG: sma:SAV4149 putative phosphoribosylglycinamide synthetase; TIGRFAM: phosphoribosylamine--glycine ligase; PFAM: phosphoribosylglycinamide synthetase YP_925527.1 PFAM: Catalase domain protein; KEGG: mpa:MAP2744c hypothetical protein YP_925528.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_925529.1 PFAM: diacylglycerol kinase, catalytic region; KEGG: ade:Adeh_3510 hypothetical protein YP_925530.1 PFAM: Helix-turn-helix, type 11 domain protein; KEGG: sco:SCO1353 transcriptional regulator YP_925531.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_925532.1 KEGG: sco:SCO3647 hypothetical protein YP_925533.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro06023 multidrug efflux transport protein YP_925534.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate YP_925535.1 KEGG: nfa:nfa30040 hypothetical protein YP_925536.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: tfu:Tfu_2449 tRNA/rRNA methyltransferase YP_925537.1 KEGG: pac:PPA2014 conserved membrane protein (DedA family) YP_925538.1 TIGRFAM: orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: fal:FRAAL1055 orotate phosphoribosyltransferase (OprT) (OPRTase) YP_925539.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase, class I and II; KEGG: sma:SAV4517 putative aminotransferase YP_925541.1 PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: tfu:Tfu_0200 ATPase YP_925542.1 PFAM: pentapeptide repeat protein; KEGG: fra:Francci3_2300 pentapeptide repeat YP_925543.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: mxa:MXAN_0340 sensory box histidine kinase YP_925544.1 PFAM: regulatory protein, MerR; KEGG: fal:FRAAL6642 putative heat shock protein HspR YP_925545.1 TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ central domain protein; heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: sco:SCO3669 molecular chaperone YP_925546.1 PFAM: GrpE protein; KEGG: sco:SCO3670 heat chock protein YP_925547.1 TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70; KEGG: sma:SAV4484 putative heat shock protein hsp70 YP_925548.1 TIGRFAM: aspartate racemase; PFAM: Asp/Glu racemase; KEGG: rfr:Rfer_3727 aspartate racemase YP_925550.1 PFAM: regulatory protein, MarR; KEGG: atc:AGR_C_466 hypothetical protein YP_925551.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: sco:SCO2646 integral membrane protein YP_925553.1 KEGG: mmc:Mmcs_2007 hypothetical protein YP_925554.1 KEGG: nfa:nfa29530 hypothetical protein YP_925555.1 KEGG: nfa:nfa24570 hypothetical protein YP_925556.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro01522 short chain dehydrogenase YP_925557.1 KEGG: nfa:nfa24590 hypothetical protein YP_925558.1 KEGG: sco:SCO0378 conserved secreted protein YP_925559.1 PFAM: cytochrome P450; KEGG: mtc:MT0342 P450 heme-thiolate protein YP_925560.1 KEGG: tfu:Tfu_2504 putative integral membrane protein YP_925561.1 PFAM: Sucraseferredoxin family protein; KEGG: rha:RHA1_ro03455 hypothetical protein YP_925562.1 PFAM: Cupin 4 family protein; KEGG: mmc:Mmcs_5250 cupin 4 YP_925563.1 KEGG: pfa:PFI1205c hypothetical protein YP_925564.1 PFAM: Sucraseferredoxin family protein; KEGG: nfa:nfa9080 hypothetical protein YP_925565.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cef:CE1938 putative coenzyme PQQ synthesis protein YP_925566.1 PFAM: regulatory protein, LuxR; Bacterio-opsin activator, HTH domain protein; Tetratricopeptide TPR_4; KEGG: sma:SAV2729 LuxR-family transcriptional regulator YP_925567.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: ade:Adeh_2267 transcriptional regulator, AraC family YP_925568.1 KEGG: ret:RHE_CH02031 putative gualylate cyclase protein YP_925569.1 catalyzes the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway YP_925570.1 catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate YP_925571.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide YP_925572.1 PFAM: nitroreductase; KEGG: dde:Dde_1353 nitroreductase family protein YP_925573.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: mxa:MXAN_2289 peptidase, M20E (Gly-X carboxypeptidase) subfamily YP_925574.1 PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro00430 multidrug resistance transporter, MFS superfamily YP_925575.1 KEGG: nfa:nfa29360 hypothetical protein YP_925576.1 converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA YP_925577.1 PFAM: HpcH/HpaI aldolase; KEGG: fra:Francci3_2805 HpcH/HpaI aldolase YP_925578.1 PFAM: HpcH/HpaI aldolase; KEGG: fal:FRAAL5522 citrate lyase beta subunit YP_925579.1 KEGG: rha:RHA1_ro05133 hypothetical protein YP_925580.1 PFAM: peptidase M48, Ste24p; KEGG: tfu:Tfu_2172 hypothetical protein YP_925581.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism YP_925582.1 catalyzes the degradation of histidine to urocanate and ammmonia YP_925583.1 KEGG: rxy:Rxyl_0139 LigA YP_925584.1 PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro06491 transporter, MFS superfamily YP_925585.1 KEGG: rha:RHA1_ro05135 hypothetical protein YP_925586.1 PFAM: regulatory proteins, IclR; KEGG: lxx:Lxx22150 transcriptional regulator, IclR family YP_925587.1 KEGG: mxa:MXAN_3638 peptidase, M19 family YP_925588.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: mpa:MAP3831c hypothetical protein YP_925590.1 KEGG: cdi:DIP1013 hypothetical protein YP_925591.1 TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: pac:PPA2193 sodium:solute symporter YP_925592.1 KEGG: fra:Francci3_2434 hypothetical protein YP_925593.1 KEGG: rha:RHA1_ro02601 hypothetical protein YP_925595.1 PFAM: FAD-binding 9, siderophore-interacting domain protein; KEGG: cgb:cg0767 siderophore-interacting protein YP_925596.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis YP_925597.1 PFAM: lipolytic enzyme, G-D-S-L family; KEGG: lxx:Lxx11940 hypothetical protein YP_925598.1 KEGG: bps:BPSS2166 hypothetical protein YP_925600.1 KEGG: nfa:nfa48830 hypothetical protein YP_925601.1 PFAM: nuclear transport factor 2; KEGG: mpa:MAP0541c hypothetical protein YP_925603.1 TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: rha:RHA1_ro04161 possible transcriptional regulator YP_925604.1 PFAM: protein of unknown function DUF81; KEGG: tfu:Tfu_1694 hypothetical protein YP_925605.1 KEGG: fra:Francci3_3736 conserved hypothetical protein YP_925606.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sma:SAV5250 two-component system response regulator YP_925607.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: sma:SAV5251 two-component system sensor kinase YP_925608.1 KEGG: mlo:mlr0587 hypothetical glycine-rich protein YP_925609.1 PFAM: ApbE family lipoprotein; KEGG: fal:FRAAL3949 putative thiamine biosynthesis lipoprotein, ApbE-like YP_925610.1 KEGG: fal:FRAAL3950 hypothetical protein; putative membrane protein YP_925611.1 PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: sco:SCP1.160c putative oxidoreductase YP_925612.1 KEGG: sma:SAV5486 oxidoreductase YP_925613.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: sma:SAV4390 putative acyl-CoA dehydrogenase YP_925615.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport YP_925616.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: xcv:XCV3263 L-lysine exporter family protein YP_925617.1 KEGG: mbo:Mb3126c hypothetical protein YP_925618.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mbo:Mb0069 short chain dehydrogenase YP_925619.1 KEGG: nfa:nfa44140 hypothetical protein YP_925620.1 PFAM: aldo/keto reductase; KEGG: ecj:JW1403 predicted oxidoreductase, NAD(P)-binding YP_925621.1 KEGG: fal:FRAAL4052 hypothetical membrane protein YP_925622.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate YP_925624.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fal:FRAAL0729 high-affinity branched-chain amino acid transport protein (ABC superfamily, atp_bind) YP_925625.1 PFAM: inner-membrane translocator; ABC transporter related; KEGG: bme:BMEII0874 high-affinity branched-chain amino acid transport system permease protein LivH / high-affinity branched-chain amino acid transport ATP-binding protein LivG YP_925626.1 PFAM: inner-membrane translocator; KEGG: gsu:GSU2006 branched-chain amino acid ABC transporter, permease protein YP_925627.1 PFAM: Extracellular ligand-binding receptor; KEGG: hwa:HQ3182A ABC-type branched-chain amino acid transport systems, substrate-binding protein YP_925628.1 PFAM: FAD dependent oxidoreductase; KEGG: ana:all3744 probable phytoene dehydrogenase YP_925629.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO3956 putative ABC transporter ATP-binding protein YP_925630.1 KEGG: sco:SCO3957 possible integral membrane protein YP_925631.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV4248 putative ABC transporter ATP-binding protein YP_925632.1 KEGG: sco:SCO3959 possible integral membrane protein YP_925634.1 PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: lxx:Lxx06230 RNA polymerase, sigma factor YP_925635.1 PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: rha:RHA1_ro06715 hypothetical protein YP_925636.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: hch:HCH_03658 SAM-dependent methyltransferase YP_925637.1 PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: gbe:GbCGDNIH1_1185 dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex YP_925638.1 PFAM: dehydrogenase, E1 component; Transketolase, central region; Transketolase domain protein; KEGG: bme:BMEII0061 2-oxoisovalerate dehydrogenase alpha and beta subunit YP_925639.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cps:CPS_3057 glyoxalase family protein YP_925640.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: bxe:Bxe_C0293 transcriptional regulator, GntR family YP_925641.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: mag:amb1303 aerobic-type carbon monoxide dehydrogenase small subunit CoxS/CutS homolog YP_925642.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: bja:blr6047 putative oxidoreductase protein YP_925643.1 KEGG: rha:RHA1_ro03794 hypothetical protein YP_925644.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rha:RHA1_ro01058 NADPH:quinone reductase YP_925645.1 KEGG: nfa:nfa44070 hypothetical protein YP_925646.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: cvi:CV3295 hypothetical protein YP_925647.1 PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV4232 hypothetical protein YP_925648.1 KEGG: rpc:RPC_0104 succinate-semialdehyde dehydrogenase (NAD(P)+) YP_925649.1 PFAM: NADH-ubiquinone oxidoreductase, chain 49kDa; KEGG: mbo:Mb0090 possible formate hydrogenase HycQ (FHL) YP_925650.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: mtc:MT0093 NADH-ubiquinone oxidoreductase, putative YP_925651.1 KEGG: mbo:Mb0088 possible hydrogenase HycP YP_925652.1 KEGG: mbo:Mb0087 possible formate hydrogenlyase HycD (FHL) YP_925653.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: mtc:MT0090 NADH-ubiquinone oxidoreductase, putative YP_925654.1 PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: mbo:Mb0085 probable oxidoreductase YP_925655.1 PFAM: regulatory protein, ArsR; KEGG: tfu:Tfu_0872 regulatory protein, ArsR YP_925656.1 catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP YP_925657.1 PFAM: aldehyde dehydrogenase; KEGG: rpc:RPC_0104 succinate-semialdehyde dehydrogenase (NAD(P)+) YP_925658.1 PFAM: peptidase M24; KEGG: hma:rrnB0212 aminopeptidase YP_925659.1 PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: pae:PA2199 probable dehydrogenase YP_925660.1 PFAM: protein of unknown function DUF1100, hydrolase family protein; KEGG: bcn:Bcen_5609 hypothetical protein YP_925661.1 KEGG: pol:Bpro_0362 extracellular solute-binding protein, family 3 YP_925662.1 PFAM: major facilitator superfamily MFS_1; KEGG: dar:Daro_1096 major facilitator superfamily MFS_1 YP_925663.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: reu:Reut_B5848 periplasmic binding protein/LacI transcriptional regulator YP_925664.1 PFAM: fatty acid desaturase; KEGG: fal:FRAAL6454 linoleoyl-CoA desaturase (delta(6)-desaturase) YP_925665.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: nfa:nfa46020 putative oxidoreductase YP_925666.1 KEGG: fra:Francci3_3797 hypothetical protein YP_925667.1 TIGRFAM: glucosamine-6-phosphate isomerase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: rha:RHA1_ro01547 glucosamine-6-phosphate deaminase YP_925668.1 PFAM: amidohydrolase; KEGG: rxy:Rxyl_0658 N-acetylglucosamine-6-phosphate deacetylase YP_925669.1 PFAM: ROK family protein; KEGG: blo:BL1341 possible sugar kinase YP_925670.1 PFAM: glycoside hydrolase, family 3 domain protein; KEGG: sco:SCO5235 sugar hydrolase YP_925671.1 KEGG: sco:SCO0533 putative sugar transporter membrane protein YP_925672.1 PFAM: ROK family protein; KEGG: blo:BL1342 NagC/XylR-type transciptional regulator YP_925673.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: fal:FRAAL3261 putative membrane transport protein (cation efflux) YP_925674.1 PFAM: lipolytic enzyme, G-D-S-L family; KEGG: sco:SCO7513 secreted hydrolase YP_925675.1 PFAM: Amidohydrolase 3; KEGG: pac:PPA0940 conserved protein, putative metal-dependent hydrolase YP_925676.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bbr:BB2411 putative transmembrane efflux protein YP_925677.1 TIGRFAM: phenylacetic acid degradation protein paaN; PFAM: aldehyde dehydrogenase; KEGG: reu:Reut_B3740 phenylacetic acid degradation protein paaN2 YP_925679.1 PFAM: stress protein; KEGG: rha:RHA1_ro02442 stress related protein YP_925680.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: tfu:Tfu_0454 tyrosine protein kinase:serine/threonine protein kinase YP_925681.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tfu:Tfu_1436 ABC-type multidrug transport system ATPase component YP_925682.1 KEGG: fal:FRAAL6618 hypothetical protein YP_925683.1 PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: tfu:Tfu_0455 sigma subunit sigma24 -like protein YP_925684.1 PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: sma:SAV3952 metallopeptidase YP_925685.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: bja:blr6721 putative reductase YP_925686.1 PFAM: carboxyl transferase; Enoyl-CoA hydratase/isomerase; KEGG: rha:RHA1_ro02935 acetyl-CoA carboxylase carboxyl transferase subunit YP_925687.1 KEGG: rha:RHA1_ro06351 reductase YP_925688.1 PFAM: Patatin; KEGG: rha:RHA1_ro06546 hypothetical protein YP_925689.1 KEGG: nfa:nfa7310 hypothetical protein YP_925690.1 TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: bce:BC2248 acetylornithine deacetylase YP_925691.1 PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: sco:SCO3815 putative dihydrolipoamide acyltransferase component YP_925692.1 PFAM: Transketolase, central region; Transketolase domain protein; KEGG: sco:SCO3816 putative branched-chain alpha keto acid dehydrogenase E1 beta subunit YP_925693.1 PFAM: dehydrogenase, E1 component; KEGG: tfu:Tfu_0180 pyruvate dehydrogenase (lipoamide) YP_925694.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: sco:SCO6751 putative efflux protein YP_925695.1 PFAM: glycoside hydrolase, family 43; KEGG: dge:Dgeo_2723 glycoside hydrolase, family 43 YP_925696.1 KEGG: rha:RHA1_ro06020 possible glutathione S-transferase YP_925697.1 PFAM: glycoside hydrolase, family 3 domain protein; KEGG: fal:FRAAL0843 putative beta-N-acetylhexosaminidase YP_925698.1 TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase, class I and II; KEGG: sma:SAV4261 putative histidinol-phosphate aminotransferase YP_925700.1 PFAM: membrane protein of unknown function; KEGG: sma:SAV4271 hypothetical protein YP_925701.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: tfu:Tfu_2341 protein-tyrosine-phosphatase YP_925702.1 PFAM: aminoglycoside phosphotransferase; fructosamine kinase; KEGG: tfu:Tfu_2340 hypothetical protein YP_925703.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: nfa:nfa49640 putative two-component system response regulator YP_925704.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rha:RHA1_ro05623 sensor kinase, two-component system YP_925706.1 KEGG: nfa:nfa5300 hypothetical protein YP_925707.1 TIGRFAM: ornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: mmc:Mmcs_0992 ornithine aminotransferase YP_925708.1 KEGG: bps:BPSS1911 hypothetical protein YP_925709.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: chy:CHY_2508 ISChy2, transposase YP_925710.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_925711.1 PFAM: Anthranilate synthase component I and chorismate binding protein; KEGG: nfa:nfa16010 putative para-aminobenzoate synthase YP_925712.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: cgb:cg1134 para-aminobenzoate synthase component I and II YP_925713.1 PFAM: glutamine amidotransferase class-I; Anthranilate synthase component I and chorismate binding protein; KEGG: sco:SCO2117 anthranilate synthase YP_925715.1 KEGG: pac:PPA0733 putative helicase protein YP_925716.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: nfa:nfa53270 putative enoyl-CoA hydratase/isomerase family protein YP_925717.1 PFAM: oxidoreductase, molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: sco:SCO0555 membrane-bound oxidoreductase YP_925718.1 PFAM: beta-Ig-H3/fasciclin; KEGG: sco:SCO0638 lipoprotein YP_925719.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in M. bovis this protein has been shown to be involved in expression of antigenic proteins YP_925720.1 KEGG: sco:SCO0633 hypothetical protein YP_925721.1 PFAM: amine oxidase; FAD dependent oxidoreductase; protein of unknown function DUF1365; KEGG: rha:RHA1_ro02557 possible amine oxidase YP_925722.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rha:RHA1_ro02559 cyclopropane-fatty-acyl-phospholipid synthase YP_925723.1 PFAM: protein of unknown function DUF1295; KEGG: rha:RHA1_ro02561 possible membrane protein YP_925724.1 KEGG: nfa:nfa26690 hypothetical protein YP_925725.1 PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: mka:MK0282 protein-L-isoaspartate carboxylmethyltransferase YP_925726.1 KEGG: rha:RHA1_ro01881 possible tyrosine protein phosphatase YP_925727.1 KEGG: mpa:MAP3880 hypothetical protein YP_925728.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: hne:HNE_0194 NADH:flavin oxidoreductase/NADH oxidase family protein YP_925729.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sco:SCO2876 acetyltransferase YP_925731.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: fal:FRAAL5043 putative methyltransferase (partial match) YP_925732.1 PFAM: ribonuclease BN; KEGG: mpa:MAP1682c hypothetical protein YP_925733.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_925734.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: mpa:MAP0910c acyl-CoA dehydrogenase YP_925735.1 PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: nfa:nfa53290 putative acetyl/propionyl-CoA carboxylase alpha subunit YP_925736.1 PFAM: carboxyl transferase; KEGG: rha:RHA1_ro01931 probable methylcrotonoyl-CoA carboxylase, beta chain YP_925737.1 PFAM: cyclase/dehydrase; Activator of Hsp90 ATPase 1 family protein; KEGG: mpa:MAP1606c hypothetical protein YP_925738.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: nfa:nfa53310 putative acyl-CoA dehydrogenase YP_925739.1 PFAM: protein of unknown function DUF1446; KEGG: nfa:nfa53320 hypothetical protein YP_925740.1 KEGG: mmc:Mmcs_5394 hypothetical protein YP_925741.1 PFAM: regulatory protein, TetR; KEGG: sma:SAV3862 TetR-family transcriptional regulator YP_925742.1 PFAM: RDD domain containing protein; KEGG: mpa:MAP1025 Pra YP_925743.1 PFAM: alpha/beta hydrolase fold; KEGG: sco:SCO0805 prolyl aminopeptidase YP_925744.1 PFAM: Phosphoglycerate mutase; KEGG: mxa:MXAN_5898 hypothetical protein YP_925745.1 PFAM: formate-tetrahydrofolate ligase, FTHFS; KEGG: gbe:GbCGDNIH1_0047 formate--tetrahydrofolate ligase YP_925746.1 PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: mpa:MAP0790 enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase YP_925747.1 KEGG: sco:SCO6731 acetyl-CoA acyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase YP_925748.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; KEGG: nfa:nfa11930 hypothetical protein YP_925749.1 PFAM: Abortive infection protein; KEGG: mpa:MAP2640c hypothetical protein YP_925750.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: lxx:Lxx20780 ATP-dependent RNA helicase YP_925751.1 PFAM: CsbD family protein; KEGG: rha:RHA1_ro04155 hypothetical protein YP_925752.1 PFAM: FAD dependent oxidoreductase; KEGG: rha:RHA1_ro02919 flavin binding monooxygenase YP_925753.1 Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group YP_925754.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: sma:SAV1682 fatty acid-CoA racemase YP_925755.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV6281 putative ABC transporter ATP-binding protein - glutamine transport YP_925756.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV6282 putative glutamine ABC transporter permease protein YP_925757.1 PFAM: extracellular solute-binding protein, family 3; KEGG: sma:SAV6283 putative amino acid ABC transporter, periplasmic amino acid-binding protein YP_925758.1 PFAM: transcriptional regulator PadR family protein; KEGG: nfa:nfa12910 putative transcriptional regulator YP_925759.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rha:RHA1_ro01415 2,4-dienoyl-CoA reductase (NADPH) YP_925760.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase, class I and II; KEGG: rha:RHA1_ro08885 probable aminotransferase YP_925761.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: sma:SAV5025 putative UDP-glucose 6-dehydrogenase YP_925762.1 KEGG: cac:CAC1615 predicted glycosyltransferase YP_925763.1 KEGG: rxy:Rxyl_3098 hypothetical protein YP_925764.1 KEGG: rxy:Rxyl_3097 hypothetical protein YP_925765.1 PFAM: glycosyl transferase, family 2; KEGG: tfu:Tfu_1639 similar to glycosyltransferase YP_925766.1 PFAM: glycosyl transferase, family 2; KEGG: dsy:DSY3936 hypothetical protein YP_925767.1 KEGG: mes:Meso_0486 hypothetical protein YP_925769.1 PFAM: glycoside hydrolase, family 1; KEGG: sma:SAV5598 putative beta-glucosidase YP_925770.1 KEGG: lma:LmjF35.0540 proteophosphoglycan 5 YP_925771.1 PFAM: diacylglycerol kinase, catalytic region; KEGG: sco:SCO0667 secreted protein YP_925772.1 PFAM: FAD linked oxidase domain protein; KEGG: sco:SCO0668 putative flavoprotein YP_925773.1 PFAM: regulatory protein, TetR; KEGG: sco:SCO0669 TetR-family transcriptional regulator YP_925774.1 PFAM: FAD dependent oxidoreductase; KEGG: sco:SCO0670 glycerol-3-phosphate dehydrogenase YP_925775.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_925776.1 KEGG: fal:FRAAL4123 hypothetical protein YP_925777.1 PFAM: regulatory protein, LuxR; KEGG: sco:SCO4263 transcriptional regulatory protein YP_925778.1 KEGG: sil:SPO0916 hypothetical protein YP_925780.1 PFAM: aldehyde dehydrogenase; KEGG: rha:RHA1_ro02683 succinate-semialdehyde dehydrogenase (NAD(P)+) YP_925781.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_925782.1 PFAM: penicillin-binding protein, transpeptidase; KEGG: mxa:MXAN_7139 putative penicillin-binding protein YP_925783.1 PFAM: helicase domain protein; DbpA, RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: lxx:Lxx13450 ATP-dependent RNA helicase YP_925784.1 TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase, class-II; sugar isomerase (SIS); KEGG: sco:SCO2789 glucosamine-fructose-6-phosphate aminotransferase YP_925785.1 KEGG: sco:SCO2788 hypothetical protein YP_925787.1 PFAM: YceI family protein; KEGG: sco:SCO5533 hypothetical protein YP_925788.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sco:SCO4151 acetyltransferase YP_925789.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: sco:SCO1209 putative acyl-CoA dehydrogenase YP_925790.1 PFAM: Na+/solute symporter; KEGG: sma:SAV3025 putative proline permease YP_925791.1 KEGG: sma:SAV3024 hypothetical protein YP_925793.1 PFAM: protein of unknown function DUF1707; KEGG: tfu:Tfu_2623 hypothetical protein YP_925794.1 PFAM: transcriptional regulator PadR family protein; KEGG: nfa:nfa36110 putative transcriptional regulator YP_925795.1 PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: ade:Adeh_0397 thimet oligopeptidase YP_925796.1 PFAM: sigma-70 region 2 domain protein; Tetratricopeptide TPR_2 repeat protein; Sigma-70, region 4 type 2; KEGG: sma:SAV1195 putative RNA polymerase ECF-subfamily sigma factor YP_925797.1 KEGG: sco:SCO4674 hypothetical protein YP_925798.1 KEGG: mmc:Mmcs_1143 hypothetical protein YP_925799.1 PFAM: glycoside hydrolase, family 6; KEGG: mtu:Rv0062 cellulase / endoglucanase YP_925800.1 PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro04995 probable multidrug resistance transporter, MFS superfamily YP_925801.1 KEGG: mpa:MAP3942 hypothetical protein YP_925802.1 PFAM: RelA/SpoT domain protein; KEGG: rha:RHA1_ro05719 cytochrome P450 CYP130 YP_925803.1 PFAM: Indigoidine synthase A family protein; KEGG: dge:Dgeo_0357 indigoidine synthase A like protein YP_925804.1 PFAM: PfkB domain protein; Helix-turn-helix, type 11 domain protein; KEGG: dge:Dgeo_0358 PfkB YP_925805.1 PFAM: YibE/F family protein; KEGG: rha:RHA1_ro05459 hypothetical protein YP_925806.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: nfa:nfa34180 putative translocator YP_925807.1 PFAM: purine catabolism PurC domain protein; KEGG: rha:RHA1_ro04467 possible transcriptional regulator YP_925808.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: mmc:Mmcs_0348 methylmalonate-semialdehyde dehydrogenase YP_925809.1 PFAM: aminotransferase class-III; KEGG: mmc:Mmcs_0347 aminotransferase class-III YP_925810.1 PFAM: FAD dependent oxidoreductase; KEGG: rha:RHA1_ro05390 hypothetical protein YP_925812.1 PFAM: glycoside hydrolase, family 31; KEGG: lmo:lmo0182 hypothetical protein YP_925813.1 PFAM: glycoside hydrolase 15-related; KEGG: xac:XAC4082 hypothetical protein YP_925814.1 PFAM: extracellular solute-binding protein, family 1; KEGG: lmo:lmo0181 similar to sugar ABC transporter, sugar-binding protein YP_925815.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lmf:LMOf2365_0191 sugar ABC transporter, permease protein YP_925816.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lin:lin0218 similar to sugar ABC transporters, permease proteins YP_925817.1 PFAM: ROK family protein; KEGG: sma:SAV1081 ROK-family transcriptional regulator YP_925819.1 PFAM: GCN5-related N-acetyltransferase; KEGG: fal:FRAAL3248 putative acetyltransferase YP_925820.1 PFAM: GCN5-related N-acetyltransferase; KEGG: lxx:Lxx17400 acetyltransferase YP_925821.1 KEGG: fal:FRAAL6508 putative serine/threonine protein kinase YP_925822.1 KEGG: btk:BT9727_2577 hypothetical protein YP_925825.1 PFAM: Sigma-70, region 4 type 2; KEGG: rpa:RPA1819 RNA polymerase ECF-type sigma factor, possible FecI YP_925827.1 PFAM: Patatin; KEGG: rha:RHA1_ro01898 possible lipid acyl hydrolase YP_925828.1 PFAM: protein of unknown function DUF488; KEGG: nha:Nham_3631 protein of unknown function DUF488 YP_925829.1 PFAM: NC domain protein; KEGG: syf:Synpcc7942_2528 hypothetical protein YP_925830.1 PFAM: GtrA family protein; KEGG: tfu:Tfu_2548 hypothetical protein YP_925831.1 KEGG: nfa:pnf1690 hypothetical protein YP_925833.1 KEGG: mpa:MAP3467c hypothetical protein YP_925834.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: mlo:mll9045 transposase YP_925836.1 PFAM: NUDIX hydrolase YP_925838.1 KEGG: nar:Saro_2717 hypothetical protein YP_925839.1 PFAM: DnaB domain protein helicase, N-terminal domain protein; DnaB domain protein helicase, C-terminal domain protein; KEGG: mmc:Mmcs_5366 DnaB helicase-like protein YP_925840.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: sma:SAV4285 DNA-damage-inducible protein F YP_925842.1 KEGG: mxa:MXAN_5598 OmpA domain protein YP_925843.1 PFAM: ribosomal protein L9; KEGG: tfu:Tfu_3092 ribosomal protein L9 YP_925844.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_925845.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: fra:Francci3_4521 single-strand binding protein YP_925846.1 PFAM: ribosomal protein S6; KEGG: mpa:MAP0067 30S ribosomal protein S6 YP_925847.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: sco:SCO3860 serine/threonine protein kinase YP_925848.1 Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues YP_925849.1 KEGG: sco:SCO4220 hypothetical protein YP_925851.1 PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: sco:SCO6994 hypothetical protein YP_925852.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: sco:SCO6995 protease YP_925854.1 PFAM: sigma-70 region 2 domain protein; KEGG: sco:SCO6996 RNA polymerase sigma factor YP_925855.1 PFAM: Methicillin resistance protein; KEGG: sco:SCO3593 hypothetical protein YP_925856.1 PFAM: alanine racemase domain protein; KEGG: sco:SCO3903 hypothetical protein YP_925857.1 KEGG: sco:SCO3902 integral membrane protein YP_925858.1 PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; KEGG: pac:PPA0126 putative penicillin-binding protein YP_925859.1 PFAM: transcriptional regulator PadR family protein; KEGG: sma:SAV4295 transcriptional regulator PadR-like family YP_925860.1 PFAM: Myo-inositol-1-phosphate synthase; Myo-inositol-1-phosphate synthase, GAPDH domain protein; KEGG: tfu:Tfu_3099 myo-inositol-1-phosphate synthase YP_925861.1 PFAM: PKD domain containing protein; peptidase M6, immune inhibitor A; KEGG: gka:GK1831 metal-dependent protease YP_925862.1 PFAM: protein of unknown function DUF853, NPT hydrolase putative; KEGG: sma:SAV4175 hypothetical protein YP_925863.1 KEGG: sma:SAV4299 putative RNA nucleotidyltransferase; TIGRFAM: metal dependent phophohydrolase; HDIG domain protein; PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region YP_925864.1 KEGG: sco:SCO3895 hypothetical protein YP_925865.1 TIGRFAM: integral membrane protein MviN; PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: sma:SAV4052 transmembrane protein YP_925866.1 SMART: serine/threonine protein kinase; KEGG: pac:PPA2303 probable serine-threonine protein kinase YP_925867.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription: in Mycobacterium bovis this protein has been shown to be active at high temperatures and during stationary phase YP_925869.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sco:SCO3890 thioredoxin reductase (NADPH) YP_925870.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: sma:SAV4306 putative thioredoxin YP_925871.1 PFAM: GCN5-related N-acetyltransferase; KEGG: fra:Francci3_4539 conserved hypothetical protein YP_925872.1 PFAM: aminotransferase, class I and II; KEGG: tfu:Tfu_1641 valine-pyruvate aminotransferase YP_925873.1 KEGG: tfu:Tfu_1640 D-alanine--D-alanine ligase; TIGRFAM: D-alanine--D-alanine ligase; PFAM: phosphoribosylglycinamide synthetase; D-alanine--D-alanine ligase domain protein YP_925874.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: nfa:nfa1490 putative 1-acylglycerol-3-phosphate O-acyltransferase YP_925875.1 TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: sma:SAV4308 putative ParB homolog YP_925876.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: sma:SAV4309 putative partitioning or sporulation protein YP_925877.1 TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: tfu:Tfu_3112 glucose inhibited division protein YP_925878.1 PFAM: single-stranded nucleic acid binding R3H domain protein; KEGG: sma:SAV4311 putative Jag-like protein YP_925879.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria YP_925880.1 PFAM: protein of unknown function DUF37; KEGG: pol:Bpro_4906 protein of unknown function DUF37 YP_925881.1 TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: sma:SAV4314 putative RNase P component YP_925882.1 PFAM: ribosomal protein L34; KEGG: tfu:Tfu_3117 ribosomal protein L34