-- dump date 20140619_165100 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_919150.1 119714008 4595450 107..700 1 NC_008697.1 hypothetical protein 700 4595450 Noca_4701 Nocardioides sp. JS614 hypothetical protein YP_919150.1 107 D 196162 CDS YP_919151.1 119714009 4595347 complement(746..1240) 1 NC_008697.1 KEGG: rha:RHA1_ro03109 hypothetical protein; hypothetical protein 1240 4595347 Noca_4702 Nocardioides sp. JS614 hypothetical protein YP_919151.1 746 R 196162 CDS YP_919152.1 119714010 4595456 complement(1295..2041) 1 NC_008697.1 hypothetical protein 2041 4595456 Noca_4703 Nocardioides sp. JS614 hypothetical protein YP_919152.1 1295 R 196162 CDS YP_919153.1 119714011 4595349 complement(2057..2761) 1 NC_008697.1 PFAM: Chromosomal replication initiator, DnaA C-terminal domain; KEGG: syw:SYNW1536 chromosomal replication initiator protein DnaA; chromosomal replication initiator DnaA domain-containing protein 2761 4595349 Noca_4704 Nocardioides sp. JS614 chromosomal replication initiator DnaA domain-containing protein YP_919153.1 2057 R 196162 CDS YP_919154.1 119714012 4595350 complement(2767..3453) 1 NC_008697.1 hypothetical protein 3453 4595350 Noca_4705 Nocardioides sp. JS614 hypothetical protein YP_919154.1 2767 R 196162 CDS YP_919155.1 119714013 4595216 complement(3468..4940) 1 NC_008697.1 KEGG: sma:SAV4509 conjugative transfer gene complex protein; Type IV secretory pathway VirD4 components-like protein 4940 4595216 Noca_4706 Nocardioides sp. JS614 Type IV secretory pathway VirD4 components-like protein YP_919155.1 3468 R 196162 CDS YP_919156.1 119714014 4595352 complement(4977..5858) 1 NC_008697.1 KEGG: mmr:Mmar10_0854 hypothetical protein; hypothetical protein 5858 4595352 Noca_4707 Nocardioides sp. JS614 hypothetical protein YP_919156.1 4977 R 196162 CDS YP_919157.1 119714015 4595353 complement(6136..8802) 1 NC_008697.1 hypothetical protein 8802 4595353 Noca_4708 Nocardioides sp. JS614 hypothetical protein YP_919157.1 6136 R 196162 CDS YP_919158.1 119714016 4595217 complement(8877..10412) 1 NC_008697.1 KEGG: sco:SCO6878 ATP-binding protein; hypothetical protein 10412 4595217 Noca_4709 Nocardioides sp. JS614 hypothetical protein YP_919158.1 8877 R 196162 CDS YP_919159.1 119714017 4595356 complement(10415..10738) 1 NC_008697.1 hypothetical protein 10738 4595356 Noca_4710 Nocardioides sp. JS614 hypothetical protein YP_919159.1 10415 R 196162 CDS YP_919160.1 119714018 4595213 complement(10977..11384) 1 NC_008697.1 hypothetical protein 11384 4595213 Noca_4711 Nocardioides sp. JS614 hypothetical protein YP_919160.1 10977 R 196162 CDS YP_919161.1 119714019 4595348 complement(11586..13151) 1 NC_008697.1 KEGG: sco:SCO3515 integral membrane protein; hypothetical protein 13151 4595348 Noca_4712 Nocardioides sp. JS614 hypothetical protein YP_919161.1 11586 R 196162 CDS YP_919162.1 119714020 4595455 complement(13148..14524) 1 NC_008697.1 KEGG: fal:FRAAL0037 hypothetical protein; putative membrane protein; hypothetical protein 14524 4595455 Noca_4713 Nocardioides sp. JS614 hypothetical protein YP_919162.1 13148 R 196162 CDS YP_919163.1 119714021 4595359 complement(14521..15339) 1 NC_008697.1 hypothetical protein 15339 4595359 Noca_4714 Nocardioides sp. JS614 hypothetical protein YP_919163.1 14521 R 196162 CDS YP_919164.1 119714022 4595212 complement(15341..15670) 1 NC_008697.1 hypothetical protein 15670 4595212 Noca_4715 Nocardioides sp. JS614 hypothetical protein YP_919164.1 15341 R 196162 CDS YP_919165.1 119714023 4595351 complement(15690..16622) 1 NC_008697.1 hypothetical protein 16622 4595351 Noca_4716 Nocardioides sp. JS614 hypothetical protein YP_919165.1 15690 R 196162 CDS YP_919166.1 119714024 4595362 complement(16619..16915) 1 NC_008697.1 hypothetical protein 16915 4595362 Noca_4717 Nocardioides sp. JS614 hypothetical protein YP_919166.1 16619 R 196162 CDS YP_919167.1 119714025 4595355 complement(16944..17834) 1 NC_008697.1 hypothetical protein 17834 4595355 Noca_4718 Nocardioides sp. JS614 hypothetical protein YP_919167.1 16944 R 196162 CDS YP_919168.1 119714026 4595354 complement(18154..21393) 1 NC_008697.1 PFAM: Peptidoglycan-binding LysM; KEGG: sma:SAV192 hypothetical protein; peptidoglycan-binding LysM 21393 4595354 Noca_4719 Nocardioides sp. JS614 peptidoglycan-binding LysM YP_919168.1 18154 R 196162 CDS YP_919169.1 119714027 4595364 complement(21419..21844) 1 NC_008697.1 KEGG: fra:Francci3_1731 putative membrane protein; hypothetical protein 21844 4595364 Noca_4720 Nocardioides sp. JS614 hypothetical protein YP_919169.1 21419 R 196162 CDS YP_919170.1 119714028 4595210 complement(21841..22323) 1 NC_008697.1 PFAM: TadE family protein; KEGG: sma:SAV190 hypothetical protein; TadE family protein 22323 4595210 Noca_4721 Nocardioides sp. JS614 TadE family protein YP_919170.1 21841 R 196162 CDS YP_919171.1 119714029 4595357 complement(22554..22967) 1 NC_008697.1 KEGG: sma:SAV189 hypothetical protein; hypothetical protein 22967 4595357 Noca_4722 Nocardioides sp. JS614 hypothetical protein YP_919171.1 22554 R 196162 CDS YP_919172.1 119714030 4595454 complement(23016..23213) 1 NC_008697.1 hypothetical protein 23213 4595454 Noca_4723 Nocardioides sp. JS614 hypothetical protein YP_919172.1 23016 R 196162 CDS YP_919173.1 119714031 4595361 complement(23250..24158) 1 NC_008697.1 KEGG: sco:SCO4528 integral membrane protein; integral membrane protein 24158 4595361 Noca_4724 Nocardioides sp. JS614 integral membrane protein YP_919173.1 23250 R 196162 CDS YP_919174.1 119714032 4595360 24370..25497 1 NC_008697.1 PFAM: phage integrase family protein; KEGG: nfa:pnf2830 putative recombinase; phage integrase family protein 25497 4595360 Noca_4725 Nocardioides sp. JS614 phage integrase family protein YP_919174.1 24370 D 196162 CDS YP_919175.1 119714033 4595363 25502..25846 1 NC_008697.1 KEGG: nfa:pnf2840 hypothetical protein; hypothetical protein 25846 4595363 Noca_4726 Nocardioides sp. JS614 hypothetical protein YP_919175.1 25502 D 196162 CDS YP_919176.1 119714034 4595453 25858..27630 1 NC_008697.1 KEGG: nfa:pnf2850 hypothetical protein; hypothetical protein 27630 4595453 Noca_4727 Nocardioides sp. JS614 hypothetical protein YP_919176.1 25858 D 196162 CDS YP_919177.1 119714035 4595478 complement(27636..28529) 1 NC_008697.1 KEGG: sco:SCO4527 integral membrane protein; integral membrane protein 28529 4595478 Noca_4728 Nocardioides sp. JS614 integral membrane protein YP_919177.1 27636 R 196162 CDS YP_919178.1 119714036 4595479 complement(28529..30028) 1 NC_008697.1 PFAM: type II secretion system protein E; KEGG: sco:SCO4526 protein kinase; type II secretion system protein E 30028 4595479 Noca_4729 Nocardioides sp. JS614 type II secretion system protein E YP_919178.1 28529 R 196162 CDS YP_919179.1 119714037 4595480 complement(30028..30861) 1 NC_008697.1 KEGG: sco:SCO4525 hypothetical protein; hypothetical protein 30861 4595480 Noca_4730 Nocardioides sp. JS614 hypothetical protein YP_919179.1 30028 R 196162 CDS YP_919180.1 119714038 4595451 complement(30861..31640) 1 NC_008697.1 PFAM: SAF domain; KEGG: fra:Francci3_1738 putative membrane protein; SAF domain-containing protein 31640 4595451 Noca_4731 Nocardioides sp. JS614 SAF domain-containing protein YP_919180.1 30861 R 196162 CDS YP_919181.1 119714039 4595475 complement(31643..32554) 1 NC_008697.1 KEGG: sco:SCP1.166 putative atp/gtp-binding protein; hypothetical protein 32554 4595475 Noca_4732 Nocardioides sp. JS614 hypothetical protein YP_919181.1 31643 R 196162 CDS YP_919182.1 119714040 4595476 complement(32551..33174) 1 NC_008697.1 hypothetical protein 33174 4595476 Noca_4733 Nocardioides sp. JS614 hypothetical protein YP_919182.1 32551 R 196162 CDS YP_919183.1 119714041 4595477 33767..34123 1 NC_008697.1 PFAM: regulatory protein, ArsR; KEGG: sth:STH2610 hypothetical protein; regulatory protein, ArsR 34123 4595477 Noca_4734 Nocardioides sp. JS614 regulatory protein, ArsR YP_919183.1 33767 D 196162 CDS YP_919184.1 119714042 4595473 34136..34738 1 NC_008697.1 hypothetical protein 34738 4595473 Noca_4735 Nocardioides sp. JS614 hypothetical protein YP_919184.1 34136 D 196162 CDS YP_919185.1 119714043 4595474 34735..35094 1 NC_008697.1 hypothetical protein 35094 4595474 Noca_4736 Nocardioides sp. JS614 hypothetical protein YP_919185.1 34735 D 196162 CDS YP_919186.1 119714044 4595472 35200..37470 1 NC_008697.1 hypothetical protein 37470 4595472 Noca_4737 Nocardioides sp. JS614 hypothetical protein YP_919186.1 35200 D 196162 CDS YP_919187.1 119714045 4595452 complement(37554..38579) 1 NC_008697.1 PFAM: protein of unknown function DUF1016; KEGG: cch:Cag_0721 hypothetical protein; hypothetical protein 38579 4595452 Noca_4738 Nocardioides sp. JS614 hypothetical protein YP_919187.1 37554 R 196162 CDS YP_919188.1 119714046 4595471 complement(38725..39390) 1 NC_008697.1 hypothetical protein 39390 4595471 Noca_4739 Nocardioides sp. JS614 hypothetical protein YP_919188.1 38725 R 196162 CDS YP_919189.1 119714047 4595470 complement(39577..40185) 1 NC_008697.1 KEGG: rha:RHA1_ro08604 hypothetical protein; hypothetical protein 40185 4595470 Noca_4740 Nocardioides sp. JS614 hypothetical protein YP_919189.1 39577 R 196162 CDS YP_919190.1 119714048 4595469 complement(40182..41153) 1 NC_008697.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: rha:RHA1_ro10013 possible chromosome partitioning protein ParA; cobyrinic acid a,c-diamide synthase 41153 4595469 Noca_4741 Nocardioides sp. JS614 cobyrinic acid a,c-diamide synthase YP_919190.1 40182 R 196162 CDS YP_919191.1 119714049 4595468 complement(42136..42606) 1 NC_008697.1 hypothetical protein 42606 4595468 Noca_4742 Nocardioides sp. JS614 hypothetical protein YP_919191.1 42136 R 196162 CDS YP_919192.1 119714050 4595467 complement(42626..44032) 1 NC_008697.1 hypothetical protein 44032 4595467 Noca_4743 Nocardioides sp. JS614 hypothetical protein YP_919192.1 42626 R 196162 CDS YP_919193.1 119714051 4595466 complement(44149..44658) 1 NC_008697.1 hypothetical protein 44658 4595466 Noca_4744 Nocardioides sp. JS614 hypothetical protein YP_919193.1 44149 R 196162 CDS YP_919194.1 119714052 4595465 complement(44736..44972) 1 NC_008697.1 hypothetical protein 44972 4595465 Noca_4745 Nocardioides sp. JS614 hypothetical protein YP_919194.1 44736 R 196162 CDS YP_919195.1 119714053 4595464 complement(44984..45325) 1 NC_008697.1 hypothetical protein 45325 4595464 Noca_4746 Nocardioides sp. JS614 hypothetical protein YP_919195.1 44984 R 196162 CDS YP_919196.1 119714054 4595462 complement(45479..51256) 1 NC_008697.1 PFAM: helicase domain protein; SMART: DEAD-like helicases-like; KEGG: nfa:pnf11080 hypothetical protein; helicase domain-containing protein 51256 4595462 Noca_4747 Nocardioides sp. JS614 helicase domain-containing protein YP_919196.1 45479 R 196162 CDS YP_919197.1 119714055 4595463 51448..52737 1 NC_008697.1 PFAM: protein of unknown function DUF1173; KEGG: mes:Meso_4154 protein of unknown function DUF1173; hypothetical protein 52737 4595463 Noca_4748 Nocardioides sp. JS614 hypothetical protein YP_919197.1 51448 D 196162 CDS YP_919198.1 119714056 4595461 complement(52979..53926) 1 NC_008697.1 hypothetical protein 53926 4595461 Noca_4749 Nocardioides sp. JS614 hypothetical protein YP_919198.1 52979 R 196162 CDS YP_919199.1 119714057 4595460 complement(54265..55326) 1 NC_008697.1 KEGG: mmc:Mmcs_5629 hypothetical protein; hypothetical protein 55326 4595460 Noca_4750 Nocardioides sp. JS614 hypothetical protein YP_919199.1 54265 R 196162 CDS YP_919200.1 119714058 4595459 complement(55406..56023) 1 NC_008697.1 hypothetical protein 56023 4595459 Noca_4751 Nocardioides sp. JS614 hypothetical protein YP_919200.1 55406 R 196162 CDS YP_919201.1 119714059 4595458 complement(56046..56783) 1 NC_008697.1 hypothetical protein 56783 4595458 Noca_4752 Nocardioides sp. JS614 hypothetical protein YP_919201.1 56046 R 196162 CDS YP_919202.1 119714060 4595457 57077..57583 1 NC_008697.1 hypothetical protein 57583 4595457 Noca_4753 Nocardioides sp. JS614 hypothetical protein YP_919202.1 57077 D 196162 CDS YP_919203.1 119714061 4595228 complement(57846..58148) 1 NC_008697.1 hypothetical protein 58148 4595228 Noca_4754 Nocardioides sp. JS614 hypothetical protein YP_919203.1 57846 R 196162 CDS YP_919204.1 119714062 4595227 complement(58262..58438) 1 NC_008697.1 hypothetical protein 58438 4595227 Noca_4755 Nocardioides sp. JS614 hypothetical protein YP_919204.1 58262 R 196162 CDS YP_919205.1 119714063 4595225 complement(58451..58765) 1 NC_008697.1 hypothetical protein 58765 4595225 Noca_4756 Nocardioides sp. JS614 hypothetical protein YP_919205.1 58451 R 196162 CDS YP_919206.1 119714064 4595226 complement(58762..59028) 1 NC_008697.1 hypothetical protein 59028 4595226 Noca_4757 Nocardioides sp. JS614 hypothetical protein YP_919206.1 58762 R 196162 CDS YP_919207.1 119714065 4595223 complement(59164..59838) 1 NC_008697.1 KEGG: rha:RHA1_ro07281 hypothetical protein; hypothetical protein 59838 4595223 Noca_4758 Nocardioides sp. JS614 hypothetical protein YP_919207.1 59164 R 196162 CDS YP_919208.1 119714066 4595221 complement(59835..60236) 1 NC_008697.1 hypothetical protein 60236 4595221 Noca_4759 Nocardioides sp. JS614 hypothetical protein YP_919208.1 59835 R 196162 CDS YP_919209.1 119714067 4595222 61225..62826 1 NC_008697.1 PFAM: SMC domain protein; KEGG: rsp:RSP_3757 hypothetical protein; SMC domain-containing protein 62826 4595222 Noca_4760 Nocardioides sp. JS614 SMC domain-containing protein YP_919209.1 61225 D 196162 CDS YP_919210.1 119714068 4595224 62813..63850 1 NC_008697.1 KEGG: rsp:RSP_3756 putative DNA helicase II / ATP-dependent DNA helicase PcrA; putative DNA helicase II / ATP-dependent DNA helicase PcrA 63850 4595224 Noca_4761 Nocardioides sp. JS614 putative DNA helicase II / ATP-dependent DNA helicase PcrA YP_919210.1 62813 D 196162 CDS YP_919211.1 119714069 4595218 complement(63996..64403) 1 NC_008697.1 hypothetical protein 64403 4595218 Noca_4762 Nocardioides sp. JS614 hypothetical protein YP_919211.1 63996 R 196162 CDS YP_919212.1 119714070 4595220 64787..65308 1 NC_008697.1 hypothetical protein 65308 4595220 Noca_4763 Nocardioides sp. JS614 hypothetical protein YP_919212.1 64787 D 196162 CDS YP_919213.1 119714071 4595219 complement(65853..66551) 1 NC_008697.1 hypothetical protein 66551 4595219 Noca_4764 Nocardioides sp. JS614 hypothetical protein YP_919213.1 65853 R 196162 CDS YP_919214.1 119714072 4595214 complement(66551..67213) 1 NC_008697.1 hypothetical protein 67213 4595214 Noca_4765 Nocardioides sp. JS614 hypothetical protein YP_919214.1 66551 R 196162 CDS YP_919215.1 119714073 4595215 67321..68067 1 NC_008697.1 PFAM: phage Gp37Gp68 family protein; KEGG: mbo:Mb2753 hypothetical protein; phage Gp37Gp68 family protein 68067 4595215 Noca_4766 Nocardioides sp. JS614 phage Gp37Gp68 family protein YP_919215.1 67321 D 196162 CDS YP_919216.1 119714074 4595370 complement(68064..69017) 1 NC_008697.1 KEGG: mbo:Mb2754c hypothetical protein; hypothetical protein 69017 4595370 Noca_4767 Nocardioides sp. JS614 hypothetical protein YP_919216.1 68064 R 196162 CDS YP_919217.1 119714075 4595368 complement(69343..70566) 1 NC_008697.1 KEGG: fra:Francci3_2839 McrBC 5-methylcytosine restriction system component-like; McrBC 5-methylcytosine restriction system component-like protein 70566 4595368 Noca_4768 Nocardioides sp. JS614 McrBC 5-methylcytosine restriction system component-like protein YP_919217.1 69343 R 196162 CDS YP_919218.1 119714076 4595371 complement(70553..73252) 1 NC_008697.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: fra:Francci3_2840 AAA_5 ATPase associated with various cellular activities; ATPase 73252 4595371 Noca_4769 Nocardioides sp. JS614 ATPase YP_919218.1 70553 R 196162 CDS YP_919219.1 119714077 4595369 complement(73249..77244) 1 NC_008697.1 KEGG: tfu:Tfu_0724 putative type II DNA modification enzyme; putative type II DNA modification enzyme 77244 4595369 Noca_4770 Nocardioides sp. JS614 putative type II DNA modification enzyme YP_919219.1 73249 R 196162 CDS YP_919220.1 119714078 4595373 complement(77241..80102) 1 NC_008697.1 PFAM: helicase domain protein; SMART: DEAD-like helicases-like; KEGG: dge:Dgeo_1544 helicase-like protein; helicase domain-containing protein 80102 4595373 Noca_4771 Nocardioides sp. JS614 helicase domain-containing protein YP_919220.1 77241 R 196162 CDS YP_919221.1 119714079 4595374 complement(80099..85324) 1 NC_008697.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: dge:Dgeo_1543 DEAD/DEAH box helicase-like protein; DEAD/DEAH box helicase domain-containing protein 85324 4595374 Noca_4772 Nocardioides sp. JS614 DEAD/DEAH box helicase domain-containing protein YP_919221.1 80099 R 196162 CDS YP_919222.1 119714080 4595377 85547..85846 1 NC_008697.1 hypothetical protein 85846 4595377 Noca_4773 Nocardioides sp. JS614 hypothetical protein YP_919222.1 85547 D 196162 CDS YP_919223.1 119714081 4595375 complement(86023..86397) 1 NC_008697.1 hypothetical protein 86397 4595375 Noca_4774 Nocardioides sp. JS614 hypothetical protein YP_919223.1 86023 R 196162 CDS YP_919224.1 119714082 4595378 complement(86485..86778) 1 NC_008697.1 hypothetical protein 86778 4595378 Noca_4775 Nocardioides sp. JS614 hypothetical protein YP_919224.1 86485 R 196162 CDS YP_919225.1 119714083 4595376 complement(87008..88855) 1 NC_008697.1 PFAM: C-5 cytosine-specific DNA methylase; KEGG: nfa:nfa40370 hypothetical protein; C-5 cytosine-specific DNA methylase 88855 4595376 Noca_4776 Nocardioides sp. JS614 C-5 cytosine-specific DNA methylase YP_919225.1 87008 R 196162 CDS YP_919226.1 119714084 4595381 complement(89360..89572) 1 NC_008697.1 hypothetical protein 89572 4595381 Noca_4777 Nocardioides sp. JS614 hypothetical protein YP_919226.1 89360 R 196162 CDS YP_919227.1 119714085 4595380 complement(91933..95640) 1 NC_008697.1 PFAM: helicase domain protein; KEGG: mmc:Mmcs_0813 helicase-like protein; helicase domain-containing protein 95640 4595380 Noca_4780 Nocardioides sp. JS614 helicase domain-containing protein YP_919227.1 91933 R 196162 CDS YP_919228.1 119714086 4595390 95741..96619 1 NC_008697.1 KEGG: net:Neut_0370 conserved hypothetical protein; hypothetical protein 96619 4595390 Noca_4781 Nocardioides sp. JS614 hypothetical protein YP_919228.1 95741 D 196162 CDS YP_919229.1 119714087 4595385 96729..97502 1 NC_008697.1 PFAM: CopG domain protein DNA-binding domain protein; YfbU family protein; KEGG: blo:BL0816 hypothetical protein; YfbU family protein 97502 4595385 Noca_4782 Nocardioides sp. JS614 YfbU family protein YP_919229.1 96729 D 196162 CDS YP_919230.1 119714088 4595387 97499..98293 1 NC_008697.1 hypothetical protein 98293 4595387 Noca_4783 Nocardioides sp. JS614 hypothetical protein YP_919230.1 97499 D 196162 CDS YP_919231.1 119714089 4595372 complement(98323..102420) 1 NC_008697.1 KEGG: mmc:Mmcs_0812 hypothetical protein; hypothetical protein 102420 4595372 Noca_4784 Nocardioides sp. JS614 hypothetical protein YP_919231.1 98323 R 196162 CDS YP_919232.1 119714090 4595382 complement(102420..104594) 1 NC_008697.1 PFAM: helicase domain protein; KEGG: mmc:Mmcs_0811 helicase-like protein; helicase domain-containing protein 104594 4595382 Noca_4785 Nocardioides sp. JS614 helicase domain-containing protein YP_919232.1 102420 R 196162 CDS YP_919233.1 119714091 4595391 104853..106181 1 NC_008697.1 PFAM: transposase, IS4 family protein; KEGG: mmc:Mmcs_5428 TnpC protein; IS4 family transposase 106181 4595391 Noca_4786 Nocardioides sp. JS614 IS4 family transposase YP_919233.1 104853 D 196162 CDS YP_919234.1 119714092 4595389 complement(106284..107300) 1 NC_008697.1 SMART: DEAD-like helicases-like; KEGG: mmc:Mmcs_0811 helicase-like protein; DEAD-like helicases-like protein 107300 4595389 Noca_4787 Nocardioides sp. JS614 DEAD-like helicases-like protein YP_919234.1 106284 R 196162 CDS YP_919235.1 119714093 4595388 complement(107615..107899) 1 NC_008697.1 KEGG: nfa:nfa41400 putative Rossmann-fold nucleotide-binding protein; putative Rossmann-fold nucleotide-binding protein 107899 4595388 Noca_4788 Nocardioides sp. JS614 putative Rossmann-fold nucleotide-binding protein YP_919235.1 107615 R 196162 CDS YP_919236.1 119714094 4595386 complement(107896..108654) 1 NC_008697.1 PFAM: SMF family protein; KEGG: sma:SAV2631 putative DNA processing Smf-family protein; SMF family protein 108654 4595386 Noca_4789 Nocardioides sp. JS614 SMF family protein YP_919236.1 107896 R 196162 CDS YP_919237.1 119714095 4595393 complement(108651..108812) 1 NC_008697.1 hypothetical protein 108812 4595393 Noca_4790 Nocardioides sp. JS614 hypothetical protein YP_919237.1 108651 R 196162 CDS YP_919238.1 119714096 4595395 complement(108826..109593) 1 NC_008697.1 KEGG: tfu:Tfu_2217 hypothetical protein; hypothetical protein 109593 4595395 Noca_4791 Nocardioides sp. JS614 hypothetical protein YP_919238.1 108826 R 196162 CDS YP_919239.1 119714097 4595399 109873..111108 1 NC_008697.1 PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: fra:Francci3_3532 phage integrase; phage integrase family protein 111108 4595399 Noca_4792 Nocardioides sp. JS614 phage integrase family protein YP_919239.1 109873 D 196162 CDS YP_919240.1 119714098 4595392 111117..113510 1 NC_008697.1 PFAM: phage integrase family protein; KEGG: rha:RHA1_ro10276 possible DNA integrase/recombinase; phage integrase family protein 113510 4595392 Noca_4793 Nocardioides sp. JS614 phage integrase family protein YP_919240.1 111117 D 196162 CDS YP_919241.1 119714099 4595396 113995..114351 1 NC_008697.1 hypothetical protein 114351 4595396 Noca_4794 Nocardioides sp. JS614 hypothetical protein YP_919241.1 113995 D 196162 CDS YP_919242.1 119714100 4595394 complement(114725..114919) 1 NC_008697.1 hypothetical protein 114919 4595394 Noca_4795 Nocardioides sp. JS614 hypothetical protein YP_919242.1 114725 R 196162 CDS YP_919243.1 119714101 4595383 complement(115237..115695) 1 NC_008697.1 hypothetical protein 115695 4595383 Noca_4796 Nocardioides sp. JS614 hypothetical protein YP_919243.1 115237 R 196162 CDS YP_919244.1 119714102 4595400 115988..117583 1 NC_008697.1 PFAM: ParB domain protein nuclease; KEGG: rha:RHA1_ro03182 possible chromosome partitioning protein-like protein; nuclease 117583 4595400 Noca_4797 Nocardioides sp. JS614 nuclease YP_919244.1 115988 D 196162 CDS YP_919245.1 119714103 4595402 complement(117637..118164) 1 NC_008697.1 hypothetical protein 118164 4595402 Noca_4798 Nocardioides sp. JS614 hypothetical protein YP_919245.1 117637 R 196162 CDS YP_919246.1 119714104 4595397 complement(118142..118561) 1 NC_008697.1 hypothetical protein 118561 4595397 Noca_4799 Nocardioides sp. JS614 hypothetical protein YP_919246.1 118142 R 196162 CDS YP_919247.1 119714105 4595398 118859..124762 1 NC_008697.1 PFAM: TOPRIM domain protein; DNA primase catalytic core, N-terminal domain; SMART: Toprim sub domain protein; KEGG: mmc:Mmcs_1430 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member-like protein; DNA primase catalytic core 124762 4595398 Noca_4800 Nocardioides sp. JS614 DNA primase catalytic core YP_919247.1 118859 D 196162 CDS YP_919248.1 119714106 4595405 complement(124926..127316) 1 NC_008697.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: psb:Psyr_3605 trimethylamine-N-oxide reductase (cytochrome c); molybdopterin oxidoreductase 127316 4595405 Noca_4801 Nocardioides sp. JS614 molybdopterin oxidoreductase YP_919248.1 124926 R 196162 CDS YP_919249.1 119714107 4595367 complement(127491..127763) 1 NC_008697.1 hypothetical protein 127763 4595367 Noca_4802 Nocardioides sp. JS614 hypothetical protein YP_919249.1 127491 R 196162 CDS YP_919250.1 119714108 4595403 complement(128146..128472) 1 NC_008697.1 hypothetical protein 128472 4595403 Noca_4803 Nocardioides sp. JS614 hypothetical protein YP_919250.1 128146 R 196162 CDS YP_919251.1 119714109 4595401 complement(128588..129268) 1 NC_008697.1 hypothetical protein 129268 4595401 Noca_4804 Nocardioides sp. JS614 hypothetical protein YP_919251.1 128588 R 196162 CDS YP_919252.1 119714110 4595407 complement(129530..130021) 1 NC_008697.1 hypothetical protein 130021 4595407 Noca_4805 Nocardioides sp. JS614 hypothetical protein YP_919252.1 129530 R 196162 CDS YP_919253.1 119714111 4595409 complement(130121..131161) 1 NC_008697.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: bja:blr3678 putative oxidoreductase; oxidoreductase FAD/NAD(P)-binding subunit 131161 4595409 Noca_4806 Nocardioides sp. JS614 oxidoreductase FAD/NAD(P)-binding subunit YP_919253.1 130121 R 196162 CDS YP_919254.1 119714112 4595413 complement(131250..132755) 1 NC_008697.1 PFAM: methane/phenol/toluene hydroxylase; KEGG: fra:Francci3_2520 methane monooxygenase; methane monooxygenase 132755 4595413 Noca_4807 Nocardioides sp. JS614 methane monooxygenase YP_919254.1 131250 R 196162 CDS YP_919255.1 119714113 4595406 complement(132773..133090) 1 NC_008697.1 PFAM: monooxygenase component MmoB/DmpM; monooxygenase component MmoB/DmpM 133090 4595406 Noca_4808 Nocardioides sp. JS614 monooxygenase component MmoB/DmpM YP_919255.1 132773 R 196162 CDS YP_919256.1 119714114 4595410 complement(133105..134154) 1 NC_008697.1 PFAM: methane/phenol/toluene hydroxylase; KEGG: fra:Francci3_2518 methane/phenol/toluene hydroxylase; methane monooxygenase 134154 4595410 Noca_4809 Nocardioides sp. JS614 methane monooxygenase YP_919256.1 133105 R 196162 CDS YP_919257.1 119714115 4595408 complement(134268..135380) 1 NC_008697.1 PFAM: Methionine synthase, vitamin-B12 independent; KEGG: sso:SSO0407 5-methyltetrahydropteroyltriglutamate- homocysteine methyltransferase; methionine synthase (B12-independent) 135380 4595408 Noca_4810 Nocardioides sp. JS614 methionine synthase (B12-independent) YP_919257.1 134268 R 196162 CDS YP_919258.1 119714116 4595419 complement(135529..137610) 1 NC_008697.1 PFAM: CoA-binding domain protein; KEGG: rxy:Rxyl_2544 CoA-binding protein; CoA-binding domain-containing protein 137610 4595419 Noca_4811 Nocardioides sp. JS614 CoA-binding domain-containing protein YP_919258.1 135529 R 196162 CDS YP_919259.1 119714117 4595414 complement(137598..138425) 1 NC_008697.1 KEGG: rxy:Rxyl_1583 glutaconate CoA-transferase; glutaconate CoA-transferase 138425 4595414 Noca_4812 Nocardioides sp. JS614 glutaconate CoA-transferase YP_919259.1 137598 R 196162 CDS YP_919260.1 119714118 4595416 complement(138422..139339) 1 NC_008697.1 PFAM: coenzyme A transferase; KEGG: bxe:Bxe_A2751 putative acyl CoA-transferase subunit A; coenzyme A transferase 139339 4595416 Noca_4813 Nocardioides sp. JS614 coenzyme A transferase YP_919260.1 138422 R 196162 CDS YP_919261.1 119714119 4595411 complement(139351..140124) 1 NC_008697.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bbr:BB1748 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 140124 4595411 Noca_4814 Nocardioides sp. JS614 short-chain dehydrogenase/reductase SDR YP_919261.1 139351 R 196162 CDS YP_919262.1 119714120 4595412 complement(140263..141588) 1 NC_008697.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: ttj:TTHA1835 NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase 141588 4595412 Noca_4815 Nocardioides sp. JS614 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_919262.1 140263 R 196162 CDS YP_919263.1 119714121 4595420 141795..142580 1 NC_008697.1 PFAM: (2R)-phospho-3-sulfolactate synthase, ComA; KEGG: sru:SRU_0020 phosphosulfolactate synthase; phosphosulfolactate synthase 142580 4595420 Noca_4816 Nocardioides sp. JS614 phosphosulfolactate synthase YP_919263.1 141795 D 196162 CDS YP_919264.1 119714122 4595418 142577..143506 1 NC_008697.1 KEGG: mac:MA3750 hypothetical protein; hypothetical protein 143506 4595418 Noca_4817 Nocardioides sp. JS614 hypothetical protein YP_919264.1 142577 D 196162 CDS YP_919265.1 119714123 4595417 143503..144858 1 NC_008697.1 PFAM: fumarate lyase; KEGG: pae:PA3517 probable lyase; fumarate lyase 144858 4595417 Noca_4818 Nocardioides sp. JS614 fumarate lyase YP_919265.1 143503 D 196162 CDS YP_919266.1 119714124 4595415 144855..145823 1 NC_008697.1 PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: pab:PAB2303 1-aminocyclopropane-1-carboxylate deaminase; D-cysteine desulfhydrase 145823 4595415 Noca_4819 Nocardioides sp. JS614 D-cysteine desulfhydrase YP_919266.1 144855 D 196162 CDS YP_919267.1 119714125 4595421 145820..147322 1 NC_008697.1 PFAM: fumarate lyase; KEGG: reu:Reut_B3820 argininosuccinate lyase; argininosuccinate lyase 147322 4595421 Noca_4820 Nocardioides sp. JS614 argininosuccinate lyase YP_919267.1 145820 D 196162 CDS YP_919268.1 119714126 4595423 complement(147308..147997) 1 NC_008697.1 PFAM: phosphoadenosine phosphosulfate reductase; KEGG: sma:SAV2129 putative phosphoadenosine phosphosulfate reductase; phosphoadenylylsulfate reductase (thioredoxin) 147997 4595423 Noca_4821 Nocardioides sp. JS614 phosphoadenylylsulfate reductase (thioredoxin) YP_919268.1 147308 R 196162 CDS YP_919269.1 119714127 4595427 148287..149699 1 NC_008697.1 KEGG: sus:Acid_3101 succinate-semialdehyde dehydrogenase (NAD(P)(+)); succinate-semialdehyde dehydrogenase (NAD(P)(+)) 149699 4595427 Noca_4822 Nocardioides sp. JS614 succinate-semialdehyde dehydrogenase (NAD(P)(+)) YP_919269.1 148287 D 196162 CDS YP_919270.1 119714128 4595404 complement(149733..151424) 1 NC_008697.1 KEGG: sma:SAV7236 hypothetical protein; CdaR family transcriptional regulator 151424 4595404 Noca_4823 Nocardioides sp. JS614 CdaR family transcriptional regulator YP_919270.1 149733 R 196162 CDS YP_919271.1 119714129 4595424 complement(151429..152046) 1 NC_008697.1 KEGG: aba:Acid345_0842 hypothetical protein; hypothetical protein 152046 4595424 Noca_4824 Nocardioides sp. JS614 hypothetical protein YP_919271.1 151429 R 196162 CDS YP_919272.1 119714130 4595422 complement(152576..153055) 1 NC_008697.1 KEGG: nfa:pnf2590 putative alkylmercury lyase; hypothetical protein 153055 4595422 Noca_4825 Nocardioides sp. JS614 hypothetical protein YP_919272.1 152576 R 196162 CDS YP_919273.1 119714131 4595433 complement(154835..155569) 1 NC_008697.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: mba:Mbar_A0777 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase; short-chain dehydrogenase/reductase SDR 155569 4595433 Noca_4826 Nocardioides sp. JS614 short-chain dehydrogenase/reductase SDR YP_919273.1 154835 R 196162 CDS YP_919274.1 119714132 4595428 complement(155578..157197) 1 NC_008697.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: tte:TTE1674 dihydrolipoamide dehydrogenase/glutathione oxidoreductase and related enzymes; FAD-dependent pyridine nucleotide-disulphide oxidoreductase 157197 4595428 Noca_4827 Nocardioides sp. JS614 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_919274.1 155578 R 196162 CDS YP_919275.1 119714133 4595430 157362..157979 1 NC_008697.1 KEGG: aba:Acid345_0842 hypothetical protein; hypothetical protein 157979 4595430 Noca_4828 Nocardioides sp. JS614 hypothetical protein YP_919275.1 157362 D 196162 CDS YP_919276.1 119714134 4595425 157986..158846 1 NC_008697.1 KEGG: sma:SAV7236 hypothetical protein; hypothetical protein 158846 4595425 Noca_4829 Nocardioides sp. JS614 hypothetical protein YP_919276.1 157986 D 196162 CDS YP_919277.1 119714135 4595426 complement(158824..159723) 1 NC_008697.1 PFAM: Integrase, catalytic region; KEGG: mmc:Mmcs_3191 integrase, catalytic region; integrase catalytic subunit 159723 4595426 Noca_4830 Nocardioides sp. JS614 integrase catalytic subunit YP_919277.1 158824 R 196162 CDS YP_919278.1 119714136 4595434 160134..161051 1 NC_008697.1 KEGG: sma:SAV7236 hypothetical protein; CdaR family transcriptional regulator 161051 4595434 Noca_4831 Nocardioides sp. JS614 CdaR family transcriptional regulator YP_919278.1 160134 D 196162 CDS YP_919279.1 119714137 4595432 complement(161068..162003) 1 NC_008697.1 PFAM: luciferase family protein; KEGG: nfa:nfa26250 hypothetical protein; luciferase family protein 162003 4595432 Noca_4832 Nocardioides sp. JS614 luciferase family protein YP_919279.1 161068 R 196162 CDS YP_919280.1 119714138 4595431 complement(162045..163511) 1 NC_008697.1 KEGG: sus:Acid_3101 succinate-semialdehyde dehydrogenase (NAD(P)(+)); succinate-semialdehyde dehydrogenase (NAD(P)(+)) 163511 4595431 Noca_4833 Nocardioides sp. JS614 succinate-semialdehyde dehydrogenase (NAD(P)(+)) YP_919280.1 162045 R 196162 CDS YP_919281.1 119714139 4595429 163615..164316 1 NC_008697.1 PFAM: phosphoadenosine phosphosulfate reductase; KEGG: sma:SAV2129 putative phosphoadenosine phosphosulfate reductase; phosphoadenylylsulfate reductase (thioredoxin) 164316 4595429 Noca_4834 Nocardioides sp. JS614 phosphoadenylylsulfate reductase (thioredoxin) YP_919281.1 163615 D 196162 CDS YP_919282.1 119714140 4595436 complement(164313..165815) 1 NC_008697.1 PFAM: fumarate lyase; KEGG: reu:Reut_B3820 argininosuccinate lyase; argininosuccinate lyase 165815 4595436 Noca_4835 Nocardioides sp. JS614 argininosuccinate lyase YP_919282.1 164313 R 196162 CDS YP_919283.1 119714141 4595438 complement(165812..166780) 1 NC_008697.1 PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: pab:PAB2303 1-aminocyclopropane-1-carboxylate deaminase; D-cysteine desulfhydrase 166780 4595438 Noca_4836 Nocardioides sp. JS614 D-cysteine desulfhydrase YP_919283.1 165812 R 196162 CDS YP_919284.1 119714142 4595442 complement(166780..168132) 1 NC_008697.1 PFAM: fumarate lyase; KEGG: pau:PA14_18830 putative lyase; fumarate lyase 168132 4595442 Noca_4837 Nocardioides sp. JS614 fumarate lyase YP_919284.1 166780 R 196162 CDS YP_919285.1 119714143 4595435 complement(168129..169058) 1 NC_008697.1 KEGG: mhu:Mhun_1798 hypothetical protein; hypothetical protein 169058 4595435 Noca_4838 Nocardioides sp. JS614 hypothetical protein YP_919285.1 168129 R 196162 CDS YP_919286.1 119714144 4595439 complement(169055..169840) 1 NC_008697.1 PFAM: (2R)-phospho-3-sulfolactate synthase, ComA; KEGG: sru:SRU_0020 phosphosulfolactate synthase; phosphosulfolactate synthase 169840 4595439 Noca_4839 Nocardioides sp. JS614 phosphosulfolactate synthase YP_919286.1 169055 R 196162 CDS YP_919287.1 119714145 4595437 170006..171376 1 NC_008697.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; KEGG: ttj:TTHA1835 NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase 171376 4595437 Noca_4840 Nocardioides sp. JS614 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_919287.1 170006 D 196162 CDS YP_919288.1 119714146 4595448 171403..172179 1 NC_008697.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: tfu:Tfu_1466 short-chain alcohol dehydrogenase; short-chain dehydrogenase/reductase SDR 172179 4595448 Noca_4841 Nocardioides sp. JS614 short-chain dehydrogenase/reductase SDR YP_919288.1 171403 D 196162 CDS YP_919289.1 119714147 4595443 172190..173107 1 NC_008697.1 PFAM: coenzyme A transferase; KEGG: nph:NP6034A 3-oxoacid CoA-transferase , alpha subunit; coenzyme A transferase 173107 4595443 Noca_4842 Nocardioides sp. JS614 coenzyme A transferase YP_919289.1 172190 D 196162 CDS YP_919290.1 119714148 4595445 173104..173964 1 NC_008697.1 KEGG: rxy:Rxyl_1583 glutaconate CoA-transferase; glutaconate CoA-transferase 173964 4595445 Noca_4843 Nocardioides sp. JS614 glutaconate CoA-transferase YP_919290.1 173104 D 196162 CDS YP_919291.1 119714149 4595440 173952..176033 1 NC_008697.1 PFAM: CoA-binding domain protein; KEGG: rxy:Rxyl_2544 CoA-binding protein; CoA-binding domain-containing protein 176033 4595440 Noca_4844 Nocardioides sp. JS614 CoA-binding domain-containing protein YP_919291.1 173952 D 196162 CDS YP_919292.1 119714150 4595447 177350..178033 1 NC_008697.1 hypothetical protein 178033 4595447 Noca_4846 Nocardioides sp. JS614 hypothetical protein YP_919292.1 177350 D 196162 CDS YP_919293.1 119714151 4595446 179204..179461 1 NC_008697.1 hypothetical protein 179461 4595446 Noca_4847 Nocardioides sp. JS614 hypothetical protein YP_919293.1 179204 D 196162 CDS YP_919294.1 119714152 4595444 complement(180258..181130) 1 NC_008697.1 PFAM: Patatin; KEGG: rha:RHA1_ro01898 possible lipid acyl hydrolase; patatin 181130 4595444 Noca_4848 Nocardioides sp. JS614 patatin YP_919294.1 180258 R 196162 CDS YP_919295.1 119714153 4595211 complement(181192..182397) 1 NC_008697.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sco:SCO7117 ferredoxin reductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase 182397 4595211 Noca_4849 Nocardioides sp. JS614 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_919295.1 181192 R 196162 CDS YP_919296.1 119714154 4595234 complement(182394..183050) 1 NC_008697.1 PFAM: GTP cyclohydrolase I; KEGG: nfa:nfa31470 putative GTP cyclohydrolase I; GTP cyclohydrolase 183050 4595234 Noca_4850 Nocardioides sp. JS614 GTP cyclohydrolase YP_919296.1 182394 R 196162 CDS YP_919297.1 119714155 4595235 complement(183047..183538) 1 NC_008697.1 KEGG: rha:RHA1_ro04235 possible membrane protein; hypothetical protein 183538 4595235 Noca_4851 Nocardioides sp. JS614 hypothetical protein YP_919297.1 183047 R 196162 CDS YP_919298.1 119714156 4595449 183564..184280 1 NC_008697.1 KEGG: mbo:Mb2651 hypothetical protein; hypothetical protein 184280 4595449 Noca_4852 Nocardioides sp. JS614 hypothetical protein YP_919298.1 183564 D 196162 CDS YP_919299.1 119714157 4595358 complement(184744..185397) 1 NC_008697.1 KEGG: ade:Adeh_3852 sigma-24 (FecI-like); sigma-24 (FecI-like) 185397 4595358 Noca_4853 Nocardioides sp. JS614 sigma-24 (FecI-like) YP_919299.1 184744 R 196162 CDS YP_919300.1 119714158 4595366 185716..186129 1 NC_008697.1 hypothetical protein 186129 4595366 Noca_4854 Nocardioides sp. JS614 hypothetical protein YP_919300.1 185716 D 196162 CDS YP_919301.1 119714159 4595365 186129..186830 1 NC_008697.1 KEGG: bcz:BCZK2544 hypothetical protein; hypothetical protein 186830 4595365 Noca_4855 Nocardioides sp. JS614 hypothetical protein YP_919301.1 186129 D 196162 CDS YP_919302.1 119714160 4595230 complement(186970..187302) 1 NC_008697.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: mpa:MAP2723c hypothetical protein; cupin 2 domain-containing protein 187302 4595230 Noca_4856 Nocardioides sp. JS614 cupin 2 domain-containing protein YP_919302.1 186970 R 196162 CDS YP_919303.1 119714161 4595236 complement(187323..187748) 1 NC_008697.1 KEGG: rha:RHA1_ro08094 hypothetical protein; hypothetical protein 187748 4595236 Noca_4857 Nocardioides sp. JS614 hypothetical protein YP_919303.1 187323 R 196162 CDS YP_919304.1 119714162 4595239 complement(187761..190481) 1 NC_008697.1 paralogs to the E1 component of pyruvate dehydrogenase subunit E1; 2-oxoacid dehydrogenase subunit E1 190481 4595239 Noca_4858 Nocardioides sp. JS614 2-oxoacid dehydrogenase subunit E1 YP_919304.1 187761 R 196162 CDS YP_919305.1 119714163 4595238 complement(191272..191919) 1 NC_008697.1 KEGG: mpa:MAP2725c hypothetical protein; transcriptional regulator 191919 4595238 Noca_4860 Nocardioides sp. JS614 transcriptional regulator YP_919305.1 191272 R 196162 CDS YP_919306.1 119714164 4595237 complement(191912..192265) 1 NC_008697.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mpa:MAP2726c FdxA; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 192265 4595237 Noca_4861 Nocardioides sp. JS614 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_919306.1 191912 R 196162 CDS YP_919307.1 119714165 4595240 192317..192931 1 NC_008697.1 KEGG: sco:SCO7426 hypothetical protein; hypothetical protein 192931 4595240 Noca_4862 Nocardioides sp. JS614 hypothetical protein YP_919307.1 192317 D 196162 CDS YP_919308.1 119714166 4595244 complement(192928..194148) 1 NC_008697.1 TIGRFAM: ornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: mmc:Mmcs_0992 ornithine aminotransferase; aminotransferase 194148 4595244 Noca_4863 Nocardioides sp. JS614 aminotransferase YP_919308.1 192928 R 196162 CDS YP_919309.1 119714167 4595233 complement(194190..194585) 1 NC_008697.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: rha:RHA1_ro08265 possible carboxymuconolactone decarboxylase; alkylhydroperoxidase 194585 4595233 Noca_4864 Nocardioides sp. JS614 alkylhydroperoxidase YP_919309.1 194190 R 196162 CDS YP_919310.1 119714168 4595243 complement(194649..196352) 1 NC_008697.1 PFAM: cytochrome c oxidase, subunit I; KEGG: sma:SAV6048 putative cytochrome c oxidase subunit I; cytochrome-c oxidase 196352 4595243 Noca_4865 Nocardioides sp. JS614 cytochrome-c oxidase YP_919310.1 194649 R 196162 CDS YP_919311.1 119714169 4595242 complement(196710..198110) 1 NC_008697.1 KEGG: sco:SCO3606 regulator; CdaR family transcriptional regulator 198110 4595242 Noca_4866 Nocardioides sp. JS614 CdaR family transcriptional regulator YP_919311.1 196710 R 196162 CDS YP_919312.1 119714170 4595241 complement(198111..199028) 1 NC_008697.1 PFAM: band 7 protein; KEGG: mmc:Mmcs_1484 band 7 protein; SPFH domain-containing protein/band 7 family protein 199028 4595241 Noca_4867 Nocardioides sp. JS614 SPFH domain-containing protein/band 7 family protein YP_919312.1 198111 R 196162 CDS YP_919313.1 119714171 4595231 complement(199253..199615) 1 NC_008697.1 PFAM: protein of unknown function DUF488; KEGG: sco:SCO7620 hypothetical protein; hypothetical protein 199615 4595231 Noca_4868 Nocardioides sp. JS614 hypothetical protein YP_919313.1 199253 R 196162 CDS YP_919314.1 119714172 4595232 200423..201763 1 NC_008697.1 catalyzes the reversible formation of D-erythrose 4-phosphate and D-fructose 6-phosphate from sedoheptulose 7-phosphate and D-glyceraldehyde 3-phosphate; transaldolase 201763 4595232 Noca_4869 Nocardioides sp. JS614 transaldolase YP_919314.1 200423 D 196162 CDS YP_919315.1 119714173 4595245 202379..203209 1 NC_008697.1 PFAM: UspA domain protein; KEGG: fra:Francci3_2760 UspA; UspA domain-containing protein 203209 4595245 Noca_4870 Nocardioides sp. JS614 UspA domain-containing protein YP_919315.1 202379 D 196162 CDS YP_919316.1 119714174 4595257 203382..203810 1 NC_008697.1 KEGG: rha:RHA1_ro04235 possible membrane protein; hypothetical protein 203810 4595257 Noca_4871 Nocardioides sp. JS614 hypothetical protein YP_919316.1 203382 D 196162 CDS YP_919317.1 119714175 4595246 complement(204173..205219) 1 NC_008697.1 PFAM: glyceraldehyde 3-phosphate dehydrogenase; KEGG: sma:SAV6296 putative glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) 205219 4595246 Noca_4872 Nocardioides sp. JS614 glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) YP_919317.1 204173 R 196162 CDS YP_919318.1 119714176 4595249 205891..206367 1 NC_008697.1 KEGG: ade:Adeh_3192 hypothetical protein; hypothetical protein 206367 4595249 Noca_4873 Nocardioides sp. JS614 hypothetical protein YP_919318.1 205891 D 196162 CDS YP_919319.1 119714177 4595250 206357..208153 1 NC_008697.1 PFAM: glycoside hydrolase 15-related; KEGG: sco:SCO6944 hypothetical protein; glycoside hydrolase 15-related 208153 4595250 Noca_4874 Nocardioides sp. JS614 glycoside hydrolase 15-related YP_919319.1 206357 D 196162 CDS YP_919320.1 119714178 4595247 208423..208806 1 NC_008697.1 KEGG: sco:SCO6164 putative DnaK suppressor protein; hypothetical protein 208806 4595247 Noca_4875 Nocardioides sp. JS614 hypothetical protein YP_919320.1 208423 D 196162 CDS YP_919321.1 119714179 4595261 complement(209199..210206) 1 NC_008697.1 KEGG: cch:Cag_0577 hypothetical protein; hypothetical protein 210206 4595261 Noca_4876 Nocardioides sp. JS614 hypothetical protein YP_919321.1 209199 R 196162 CDS YP_919322.1 119714180 4595255 complement(210203..210739) 1 NC_008697.1 hypothetical protein 210739 4595255 Noca_4877 Nocardioides sp. JS614 hypothetical protein YP_919322.1 210203 R 196162 CDS YP_919323.1 119714181 4595251 complement(210959..211270) 1 NC_008697.1 KEGG: mmc:Mmcs_4843 hypothetical protein; hypothetical protein 211270 4595251 Noca_4878 Nocardioides sp. JS614 hypothetical protein YP_919323.1 210959 R 196162 CDS YP_919324.1 119714182 4595256 211331..212077 1 NC_008697.1 PFAM: phage Gp37Gp68 family protein; KEGG: mbo:Mb2753 hypothetical protein; phage Gp37Gp68 family protein 212077 4595256 Noca_4879 Nocardioides sp. JS614 phage Gp37Gp68 family protein YP_919324.1 211331 D 196162 CDS YP_919325.1 119714183 4595254 complement(212067..213299) 1 NC_008697.1 hypothetical protein 213299 4595254 Noca_4880 Nocardioides sp. JS614 hypothetical protein YP_919325.1 212067 R 196162 CDS YP_919326.1 119714184 4595264 213460..213969 1 NC_008697.1 hypothetical protein 213969 4595264 Noca_4881 Nocardioides sp. JS614 hypothetical protein YP_919326.1 213460 D 196162 CDS YP_919327.1 119714185 4595265 complement(213973..214677) 1 NC_008697.1 KEGG: mmc:Mmcs_0815 hypothetical protein; hypothetical protein 214677 4595265 Noca_4882 Nocardioides sp. JS614 hypothetical protein YP_919327.1 213973 R 196162 CDS YP_919328.1 119714186 4595258 complement(214667..215497) 1 NC_008697.1 KEGG: mmc:Mmcs_0814 hypothetical protein; hypothetical protein 215497 4595258 Noca_4883 Nocardioides sp. JS614 hypothetical protein YP_919328.1 214667 R 196162 CDS YP_919329.1 119714187 4595253 215626..216111 1 NC_008697.1 KEGG: nfa:pnf1910 hypothetical protein; hypothetical protein 216111 4595253 Noca_4884 Nocardioides sp. JS614 hypothetical protein YP_919329.1 215626 D 196162 CDS YP_919330.1 119714188 4595252 216108..217961 1 NC_008697.1 KEGG: nfa:pnf1900 hypothetical protein; hypothetical protein 217961 4595252 Noca_4885 Nocardioides sp. JS614 hypothetical protein YP_919330.1 216108 D 196162 CDS YP_919331.1 119714189 4595269 217946..220069 1 NC_008697.1 PFAM: phage integrase family protein; KEGG: nfa:pnf1890 hypothetical protein; phage integrase family protein 220069 4595269 Noca_4886 Nocardioides sp. JS614 phage integrase family protein YP_919331.1 217946 D 196162 CDS YP_919332.1 119714190 4595270 220066..220512 1 NC_008697.1 KEGG: rha:RHA1_ro03205 hypothetical protein; hypothetical protein 220512 4595270 Noca_4887 Nocardioides sp. JS614 hypothetical protein YP_919332.1 220066 D 196162 CDS YP_919333.1 119714191 4595259 complement(220667..221230) 1 NC_008697.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: rha:RHA1_ro03562 hypothetical protein; deaminase-reductase domain-containing protein 221230 4595259 Noca_4888 Nocardioides sp. JS614 deaminase-reductase domain-containing protein YP_919333.1 220667 R 196162 CDS YP_919334.1 119714192 4595262 complement(221746..222111) 1 NC_008697.1 KEGG: cch:Cag_1216 hypothetical protein; hypothetical protein 222111 4595262 Noca_4889 Nocardioides sp. JS614 hypothetical protein YP_919334.1 221746 R 196162 CDS YP_919335.1 119714193 4595260 complement(222113..222775) 1 NC_008697.1 hypothetical protein 222775 4595260 Noca_4890 Nocardioides sp. JS614 hypothetical protein YP_919335.1 222113 R 196162 CDS YP_919336.1 119714194 4595271 complement(222781..223032) 1 NC_008697.1 KEGG: ret:RHE_CH02031 putative gualylate cyclase protein; putative gualylate cyclase protein 223032 4595271 Noca_4891 Nocardioides sp. JS614 putative gualylate cyclase protein YP_919336.1 222781 R 196162 CDS YP_919337.1 119714195 4595273 223083..224876 1 NC_008697.1 PFAM: transcriptional activator domain; Tetratricopeptide TPR_4; KEGG: mlo:mlr2433 probable regulatory protein; transcriptional activator domain-containing protein 224876 4595273 Noca_4892 Nocardioides sp. JS614 transcriptional activator domain-containing protein YP_919337.1 223083 D 196162 CDS YP_919338.1 119714196 4595263 225245..226069 1 NC_008697.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: hch:HCH_03658 SAM-dependent methyltransferase; methyltransferase type 11 226069 4595263 Noca_4893 Nocardioides sp. JS614 methyltransferase type 11 YP_919338.1 225245 D 196162 CDS YP_919339.1 119714197 4595266 complement(226495..227193) 1 NC_008697.1 hypothetical protein 227193 4595266 Noca_4894 Nocardioides sp. JS614 hypothetical protein YP_919339.1 226495 R 196162 CDS YP_919340.1 119714198 4595274 227340..228476 1 NC_008697.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: fal:FRAAL2981 putative two-component sensor; histidine kinase, dimerisation and phosphoacceptor region 228476 4595274 Noca_4895 Nocardioides sp. JS614 histidine kinase, dimerisation and phosphoacceptor region YP_919340.1 227340 D 196162 CDS YP_919341.1 119714199 4595275 228473..229120 1 NC_008697.1 PFAM: regulatory protein, LuxR; response regulator receiver; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sco:SCO3640 putative two-component system regulator; response regulator receiver 229120 4595275 Noca_4896 Nocardioides sp. JS614 response regulator receiver YP_919341.1 228473 D 196162 CDS YP_919342.1 119714200 4595278 complement(229599..230243) 1 NC_008697.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: rha:RHA1_ro04202 response regulator, two-component system; response regulator receiver 230243 4595278 Noca_4897 Nocardioides sp. JS614 response regulator receiver YP_919342.1 229599 R 196162 CDS YP_919343.1 119714201 4595268 complement(230236..231711) 1 NC_008697.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: rha:RHA1_ro04201 sensor kinase, two-component system; ATPase domain-containing protein 231711 4595268 Noca_4898 Nocardioides sp. JS614 ATPase domain-containing protein YP_919343.1 230236 R 196162 CDS YP_919344.1 119714202 4595267 complement(231716..232393) 1 NC_008697.1 hypothetical protein 232393 4595267 Noca_4899 Nocardioides sp. JS614 hypothetical protein YP_919344.1 231716 R 196162 CDS YP_919345.1 119714203 4595279 complement(232691..233158) 1 NC_008697.1 hypothetical protein 233158 4595279 Noca_4900 Nocardioides sp. JS614 hypothetical protein YP_919345.1 232691 R 196162 CDS YP_919346.1 119714204 4595276 233319..234470 1 NC_008697.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: sma:SAV4680 two-component system sensor kinase; histidine kinase, dimerisation and phosphoacceptor region 234470 4595276 Noca_4901 Nocardioides sp. JS614 histidine kinase, dimerisation and phosphoacceptor region YP_919346.1 233319 D 196162 CDS YP_919347.1 119714205 4595280 234467..235117 1 NC_008697.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: sco:SCO3640 putative two-component system regulator; response regulator receiver 235117 4595280 Noca_4902 Nocardioides sp. JS614 response regulator receiver YP_919347.1 234467 D 196162 CDS YP_919348.1 119714206 4595283 complement(235386..236429) 1 NC_008697.1 hypothetical protein 236429 4595283 Noca_4903 Nocardioides sp. JS614 hypothetical protein YP_919348.1 235386 R 196162 CDS YP_919349.1 119714207 4595248 complement(236810..237466) 1 NC_008697.1 hypothetical protein 237466 4595248 Noca_4904 Nocardioides sp. JS614 hypothetical protein YP_919349.1 236810 R 196162 CDS YP_919350.1 119714208 4595282 237578..239068 1 NC_008697.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: rha:RHA1_ro04201 sensor kinase, two-component system; ATPase domain-containing protein 239068 4595282 Noca_4905 Nocardioides sp. JS614 ATPase domain-containing protein YP_919350.1 237578 D 196162 CDS YP_919351.1 119714209 4595281 239065..239682 1 NC_008697.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: rha:RHA1_ro04202 response regulator, two-component system; response regulator receiver 239682 4595281 Noca_4906 Nocardioides sp. JS614 response regulator receiver YP_919351.1 239065 D 196162 CDS YP_919352.1 119714210 4595287 241009..241611 1 NC_008697.1 PFAM: protein of unknown function DUF1326; KEGG: mlo:mll4476 hypothetical protein; hypothetical protein 241611 4595287 Noca_4909 Nocardioides sp. JS614 hypothetical protein YP_919352.1 241009 D 196162 CDS YP_919353.1 119714211 4595277 241616..242431 1 NC_008697.1 KEGG: bca:BCE_A0200 hypothetical protein; hypothetical protein 242431 4595277 Noca_4910 Nocardioides sp. JS614 hypothetical protein YP_919353.1 241616 D 196162 CDS YP_919354.1 119714212 4595286 complement(242711..244108) 1 NC_008697.1 PFAM: FAD linked oxidase domain protein; Berberine/berberine domain protein; KEGG: pol:Bpro_1506 FAD linked oxidase-like; FAD linked oxidase domain-containing protein 244108 4595286 Noca_4911 Nocardioides sp. JS614 FAD linked oxidase domain-containing protein YP_919354.1 242711 R 196162 CDS YP_919355.1 119714213 4595285 244241..244942 1 NC_008697.1 PFAM: helix-turn-helix, HxlR type; KEGG: mbo:Mb1754c hypothetical protein; helix-turn-helix, HxlR type 244942 4595285 Noca_4912 Nocardioides sp. JS614 helix-turn-helix, HxlR type YP_919355.1 244241 D 196162 CDS YP_919356.1 119714214 4595284 245204..246907 1 NC_008697.1 PFAM: regulatory protein, LuxR; KEGG: mmc:Mmcs_0427 transcriptional regulator, LuxR family; regulatory protein, LuxR 246907 4595284 Noca_4913 Nocardioides sp. JS614 regulatory protein, LuxR YP_919356.1 245204 D 196162 CDS YP_919357.1 119714215 4595290 246984..247397 1 NC_008697.1 PFAM: protein of unknown function DUF1486; KEGG: sma:SAV3997 hypothetical protein; hypothetical protein 247397 4595290 Noca_4914 Nocardioides sp. JS614 hypothetical protein YP_919357.1 246984 D 196162 CDS YP_919358.1 119714216 4595291 247405..247689 1 NC_008697.1 hypothetical protein 247689 4595291 Noca_4915 Nocardioides sp. JS614 hypothetical protein YP_919358.1 247405 D 196162 CDS YP_919359.1 119714217 4595288 247862..248695 1 NC_008697.1 PFAM: alpha/beta hydrolase fold; KEGG: pau:PA14_28630 putative hydrolase; alpha/beta hydrolase fold 248695 4595288 Noca_4916 Nocardioides sp. JS614 alpha/beta hydrolase fold YP_919359.1 247862 D 196162 CDS YP_919360.1 119714218 4595300 248692..249510 1 NC_008697.1 KEGG: neu:NE2346 possible hydrolase; putative hydrolase 249510 4595300 Noca_4917 Nocardioides sp. JS614 putative hydrolase YP_919360.1 248692 D 196162 CDS YP_919361.1 119714219 4595289 complement(249532..251082) 1 NC_008697.1 PFAM: regulatory protein, LuxR; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: mpa:MAP3352c hypothetical protein; metal-dependent phosphohydrolase 251082 4595289 Noca_4918 Nocardioides sp. JS614 metal-dependent phosphohydrolase YP_919361.1 249532 R 196162 CDS YP_919362.1 119714220 4595295 complement(251145..252002) 1 NC_008697.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: bja:bll8020 putative ubiquinone/menaquinone biosynthesis methyltransferase; methyltransferase type 11 252002 4595295 Noca_4919 Nocardioides sp. JS614 methyltransferase type 11 YP_919362.1 251145 R 196162 CDS YP_919363.1 119714221 4595296 252051..253688 1 NC_008697.1 PFAM: regulatory protein, LuxR; Tetratricopeptide TPR_4; KEGG: mmc:Mmcs_0427 transcriptional regulator, LuxR family; LuxR family transcriptional regulator 253688 4595296 Noca_4920 Nocardioides sp. JS614 LuxR family transcriptional regulator YP_919363.1 252051 D 196162 CDS YP_919364.1 119714222 4595292 254243..254560 1 NC_008697.1 hypothetical protein 254560 4595292 Noca_4921 Nocardioides sp. JS614 hypothetical protein YP_919364.1 254243 D 196162 CDS YP_919365.1 119714223 4595305 254736..255527 1 NC_008697.1 KEGG: fra:Francci3_1530 conserved hypothetical protein; hypothetical protein 255527 4595305 Noca_4922 Nocardioides sp. JS614 hypothetical protein YP_919365.1 254736 D 196162 CDS YP_919366.1 119714224 4595294 255940..256533 1 NC_008697.1 hypothetical protein 256533 4595294 Noca_4923 Nocardioides sp. JS614 hypothetical protein YP_919366.1 255940 D 196162 CDS YP_919367.1 119714225 4595297 complement(256626..256913) 1 NC_008697.1 hypothetical protein 256913 4595297 Noca_4924 Nocardioides sp. JS614 hypothetical protein YP_919367.1 256626 R 196162 CDS YP_919368.1 119714226 4595299 complement(256921..257334) 1 NC_008697.1 PFAM: protein of unknown function DUF1486; KEGG: sma:SAV3997 hypothetical protein; hypothetical protein 257334 4595299 Noca_4925 Nocardioides sp. JS614 hypothetical protein YP_919368.1 256921 R 196162 CDS YP_919369.1 119714227 4595293 complement(257412..259136) 1 NC_008697.1 PFAM: regulatory protein, LuxR; KEGG: mmc:Mmcs_0427 transcriptional regulator, LuxR family; regulatory protein, LuxR 259136 4595293 Noca_4926 Nocardioides sp. JS614 regulatory protein, LuxR YP_919369.1 257412 R 196162 CDS YP_919370.1 119714228 4595308 complement(259580..260005) 1 NC_008697.1 hypothetical protein 260005 4595308 Noca_4927 Nocardioides sp. JS614 hypothetical protein YP_919370.1 259580 R 196162 CDS YP_919371.1 119714229 4595309 complement(260016..263243) 1 NC_008697.1 PFAM: transcriptional activator domain; Tetratricopeptide TPR_4; KEGG: ade:Adeh_3289 transcriptional regulator, SARP family; transcriptional activator domain-containing protein 263243 4595309 Noca_4928 Nocardioides sp. JS614 transcriptional activator domain-containing protein YP_919371.1 260016 R 196162 CDS YP_919372.1 119714230 4595301 263356..264168 1 NC_008697.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bja:bll4353 2-deoxy-D-gluconate 3-dehydrogenase; short-chain dehydrogenase/reductase SDR 264168 4595301 Noca_4929 Nocardioides sp. JS614 short-chain dehydrogenase/reductase SDR YP_919372.1 263356 D 196162 CDS YP_919373.1 119714231 4595304 264231..264887 1 NC_008697.1 PFAM: protein of unknown function DUF1326; KEGG: bpm:BURPS1710b_1552 hypothetical protein; hypothetical protein 264887 4595304 Noca_4930 Nocardioides sp. JS614 hypothetical protein YP_919373.1 264231 D 196162 CDS YP_919374.1 119714232 4595298 264884..265669 1 NC_008697.1 KEGG: rxy:Rxyl_0427 hypothetical protein; hypothetical protein 265669 4595298 Noca_4931 Nocardioides sp. JS614 hypothetical protein YP_919374.1 264884 D 196162 CDS YP_919375.1 119714233 4595313 265753..266301 1 NC_008697.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: rha:RHA1_ro03562 hypothetical protein; deaminase-reductase domain-containing protein 266301 4595313 Noca_4932 Nocardioides sp. JS614 deaminase-reductase domain-containing protein YP_919375.1 265753 D 196162 CDS YP_919376.1 119714234 4595314 complement(266598..266846) 1 NC_008697.1 hypothetical protein 266846 4595314 Noca_4933 Nocardioides sp. JS614 hypothetical protein YP_919376.1 266598 R 196162 CDS YP_919377.1 119714235 4595302 complement(266843..267616) 1 NC_008697.1 hypothetical protein 267616 4595302 Noca_4934 Nocardioides sp. JS614 hypothetical protein YP_919377.1 266843 R 196162 CDS YP_919378.1 119714236 4595306 complement(267996..268388) 1 NC_008697.1 hypothetical protein 268388 4595306 Noca_4935 Nocardioides sp. JS614 hypothetical protein YP_919378.1 267996 R 196162 CDS YP_919379.1 119714237 4595303 268640..274582 1 NC_008697.1 PFAM: TOPRIM domain protein; DNA primase catalytic core, N-terminal domain; SMART: Toprim sub domain protein; KEGG: mmc:Mmcs_1430 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member-like protein; DNA primase catalytic core 274582 4595303 Noca_4936 Nocardioides sp. JS614 DNA primase catalytic core YP_919379.1 268640 D 196162 CDS YP_919380.1 119714238 4595317 complement(275322..275990) 1 NC_008697.1 PFAM: regulatory protein, TetR; Tetracyclin repressor domain protein; KEGG: rha:RHA1_ro02950 probable transcriptional regulator, TetR family; regulatory protein, TetR 275990 4595317 Noca_4938 Nocardioides sp. JS614 regulatory protein, TetR YP_919380.1 275322 R 196162 CDS YP_919381.1 119714239 4595307 276055..277059 1 NC_008697.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cyb:CYB_1206 drug exporter-1 ABC transporter (DrugE1) family, ATP-binding protein; ABC transporter related 277059 4595307 Noca_4939 Nocardioides sp. JS614 ABC transporter related YP_919381.1 276055 D 196162 CDS YP_919382.1 119714240 4595310 277056..277883 1 NC_008697.1 PFAM: ABC-2 type transporter; KEGG: ape:APE2512 putative ABC-2 type transport system permease protein; ABC-2 type transporter 277883 4595310 Noca_4940 Nocardioides sp. JS614 ABC-2 type transporter YP_919382.1 277056 D 196162 CDS YP_919383.1 119714241 4595318 277880..278749 1 NC_008697.1 KEGG: cya:CYA_1761 putative ABC-2 type transporter, permease protein; putative ABC-2 type transporter, permease protein 278749 4595318 Noca_4941 Nocardioides sp. JS614 putative ABC-2 type transporter, permease protein YP_919383.1 277880 D 196162 CDS YP_919384.1 119714242 4595319 complement(278818..279516) 1 NC_008697.1 PFAM: alkylmercury lyase; KEGG: mmr:Mmar10_2330 alkylmercury lyase; alkylmercury lyase 279516 4595319 Noca_4942 Nocardioides sp. JS614 alkylmercury lyase YP_919384.1 278818 R 196162 CDS YP_919385.1 119714243 4595322 complement(279513..279824) 1 NC_008697.1 hypothetical protein 279824 4595322 Noca_4943 Nocardioides sp. JS614 hypothetical protein YP_919385.1 279513 R 196162 CDS YP_919386.1 119714244 4595312 complement(279821..280396) 1 NC_008697.1 hypothetical protein 280396 4595312 Noca_4944 Nocardioides sp. JS614 hypothetical protein YP_919386.1 279821 R 196162 CDS YP_919387.1 119714245 4595311 complement(280467..280910) 1 NC_008697.1 PFAM: regulatory protein, MerR; KEGG: bam:Bamb_1782 transcriptional regulator, MerR family; regulatory protein, MerR 280910 4595311 Noca_4945 Nocardioides sp. JS614 regulatory protein, MerR YP_919387.1 280467 R 196162 CDS YP_919388.1 119714246 4595323 complement(281230..282660) 1 NC_008697.1 TIGRFAM: mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: cjk:jk1442 putative mercuric reductase; mercuric reductase 282660 4595323 Noca_4946 Nocardioides sp. JS614 mercuric reductase YP_919388.1 281230 R 196162 CDS YP_919389.1 119714247 4595320 282758..283147 1 NC_008697.1 PFAM: regulatory protein, MerR; KEGG: cjk:jk1441 putative transcriptional regulator (MerR family); regulatory protein, MerR 283147 4595320 Noca_4947 Nocardioides sp. JS614 regulatory protein, MerR YP_919389.1 282758 D 196162 CDS YP_919390.1 119714248 4595324 283347..284357 1 NC_008697.1 PFAM: Bile acid:sodium symporter; KEGG: fal:FRAAL5305 putative arsenite efflux pump or related permease; bile acid:sodium symporter 284357 4595324 Noca_4948 Nocardioides sp. JS614 bile acid:sodium symporter YP_919390.1 283347 D 196162 CDS YP_919391.1 119714249 4595327 284451..284804 1 NC_008697.1 KEGG: nfa:nfa28290 hypothetical protein; hypothetical protein 284804 4595327 Noca_4949 Nocardioides sp. JS614 hypothetical protein YP_919391.1 284451 D 196162 CDS YP_919392.1 119714250 4595316 284801..285241 1 NC_008697.1 PFAM: regulatory protein, MerR; KEGG: nfa:pnf2580 putative transcriptional regulator; regulatory protein, MerR 285241 4595316 Noca_4950 Nocardioides sp. JS614 regulatory protein, MerR YP_919392.1 284801 D 196162 CDS YP_919393.1 119714251 4595326 285512..286138 1 NC_008697.1 PFAM: Redoxin domain protein; Thioredoxin domain; KEGG: mbo:Mb1704 probable conserved lipoprotein DsbF; redoxin domain-containing protein 286138 4595326 Noca_4951 Nocardioides sp. JS614 redoxin domain-containing protein YP_919393.1 285512 D 196162 CDS YP_919394.1 119714252 4595325 286148..287041 1 NC_008697.1 PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: mbo:Mb2902c probable conserved integral membrane protein; cytochrome c biogenesis protein, transmembrane region 287041 4595325 Noca_4952 Nocardioides sp. JS614 cytochrome c biogenesis protein, transmembrane region YP_919394.1 286148 D 196162 CDS YP_919395.1 119714253 4595328 287366..287704 1 NC_008697.1 KEGG: nfa:nfa28290 hypothetical protein; hypothetical protein 287704 4595328 Noca_4953 Nocardioides sp. JS614 hypothetical protein YP_919395.1 287366 D 196162 CDS YP_919396.1 119714254 4595332 287701..288132 1 NC_008697.1 PFAM: regulatory protein, MerR; KEGG: nfa:pnf2580 putative transcriptional regulator; regulatory protein, MerR 288132 4595332 Noca_4954 Nocardioides sp. JS614 regulatory protein, MerR YP_919396.1 287701 D 196162 CDS YP_919397.1 119714255 4595321 288129..288407 1 NC_008697.1 hypothetical protein 288407 4595321 Noca_4955 Nocardioides sp. JS614 hypothetical protein YP_919397.1 288129 D 196162 CDS YP_919398.1 119714256 4595331 288407..288919 1 NC_008697.1 hypothetical protein 288919 4595331 Noca_4956 Nocardioides sp. JS614 hypothetical protein YP_919398.1 288407 D 196162 CDS YP_919399.1 119714257 4595330 288932..289267 1 NC_008697.1 PFAM: protein of unknown function UPF0060; KEGG: mbo:Mb2672c hypothetical protein; hypothetical protein 289267 4595330 Noca_4957 Nocardioides sp. JS614 hypothetical protein YP_919399.1 288932 D 196162 CDS YP_919400.1 119714258 4595329 289468..290097 1 NC_008697.1 PFAM: protein of unknown function UPF0157; KEGG: mmc:Mmcs_3004 dephospho-CoA kinase; hypothetical protein 290097 4595329 Noca_4958 Nocardioides sp. JS614 hypothetical protein YP_919400.1 289468 D 196162 CDS YP_919401.1 119714259 4595335 complement(290211..290876) 1 NC_008697.1 hypothetical protein 290876 4595335 Noca_4959 Nocardioides sp. JS614 hypothetical protein YP_919401.1 290211 R 196162 CDS YP_919402.1 119714260 4595336 complement(290860..291423) 1 NC_008697.1 KEGG: rfr:Rfer_3556 hypothetical protein; hypothetical protein 291423 4595336 Noca_4960 Nocardioides sp. JS614 hypothetical protein YP_919402.1 290860 R 196162 CDS YP_919403.1 119714261 4595333 complement(291434..292528) 1 NC_008697.1 hypothetical protein 292528 4595333 Noca_4961 Nocardioides sp. JS614 hypothetical protein YP_919403.1 291434 R 196162 CDS YP_919404.1 119714262 4595344 complement(292952..296008) 1 NC_008697.1 PFAM: transcriptional regulator domain protein; transcriptional activator domain; Tetratricopeptide TPR_4; KEGG: nfa:nfa34460 putative transcriptional regulator; transcriptional activator domain-containing protein 296008 4595344 Noca_4962 Nocardioides sp. JS614 transcriptional activator domain-containing protein YP_919404.1 292952 R 196162 CDS YP_919405.1 119714263 4595334 296114..296440 1 NC_008697.1 hypothetical protein 296440 4595334 Noca_4963 Nocardioides sp. JS614 hypothetical protein YP_919405.1 296114 D 196162 CDS YP_919406.1 119714264 4595340 296469..297053 1 NC_008697.1 hypothetical protein 297053 4595340 Noca_4964 Nocardioides sp. JS614 hypothetical protein YP_919406.1 296469 D 196162 CDS YP_919407.1 119714265 4595341 297101..297793 1 NC_008697.1 KEGG: chu:CHU_0224 hypothetical protein; hypothetical protein 297793 4595341 Noca_4965 Nocardioides sp. JS614 hypothetical protein YP_919407.1 297101 D 196162 CDS YP_919408.1 119714266 4595337 297970..300246 1 NC_008697.1 PFAM: MMPL domain protein; KEGG: sco:SCO6091 integral membrane protein; MMPL domain-containing protein 300246 4595337 Noca_4966 Nocardioides sp. JS614 MMPL domain-containing protein YP_919408.1 297970 D 196162 CDS YP_919409.1 119714267 4595345 300847..301539 1 NC_008697.1 hypothetical protein 301539 4595345 Noca_4967 Nocardioides sp. JS614 hypothetical protein YP_919409.1 300847 D 196162 CDS YP_919410.1 119714268 4595339 301532..302650 1 NC_008697.1 PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: sco:SCO3537 DNA-binding protein; helix-turn-helix domain-containing protein 302650 4595339 Noca_4968 Nocardioides sp. JS614 helix-turn-helix domain-containing protein YP_919410.1 301532 D 196162 CDS YP_919411.1 119714269 4595342 302654..302875 1 NC_008697.1 KEGG: gsu:GSU0763 helicase, putative; helicase, putative 302875 4595342 Noca_4969 Nocardioides sp. JS614 helicase, putative YP_919411.1 302654 D 196162 CDS YP_919412.1 119714270 4595343 303064..305532 1 NC_008697.1 KEGG: chu:CHU_0041 hypothetical protein; hypothetical protein 305532 4595343 Noca_4970 Nocardioides sp. JS614 hypothetical protein YP_919412.1 303064 D 196162 CDS YP_919413.1 119714271 4595338 complement(305533..305964) 1 NC_008697.1 hypothetical protein 305964 4595338 Noca_4971 Nocardioides sp. JS614 hypothetical protein YP_919413.1 305533 R 196162 CDS YP_921238.1 119714273 4598158 72..1658 1 NC_008699.1 KEGG: fra:Francci3_0001 chromosomal replication initiator protein DnaA; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator, DnaA C-terminal domain; Chromosomal replication initiator, DnaA; SMART: AAA ATPase; chromosomal replication initiator protein DnaA 1658 4598158 Noca_0001 Nocardioides sp. JS614 chromosomal replication initiator protein DnaA YP_921238.1 72 D 196162 CDS YP_921239.1 119714274 4598432 2029..3255 1 NC_008699.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 3255 4598432 Noca_0002 Nocardioides sp. JS614 DNA polymerase III subunit beta YP_921239.1 2029 D 196162 CDS YP_921240.1 119714275 4598433 3332..4237 1 NC_008699.1 similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate; 6-phosphogluconate dehydrogenase 4237 4598433 Noca_0003 Nocardioides sp. JS614 6-phosphogluconate dehydrogenase YP_921240.1 3332 D 196162 CDS YP_921241.1 119714276 4598355 4254..5516 1 NC_008699.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 5516 recF 4598355 recF Nocardioides sp. JS614 recombination protein F YP_921241.1 4254 D 196162 CDS YP_921242.1 119714277 4598356 5506..6072 1 NC_008699.1 PFAM: protein of unknown function DUF721; KEGG: sco:SCO3875 conserved hypothetical protein; hypothetical protein 6072 4598356 Noca_0005 Nocardioides sp. JS614 hypothetical protein YP_921242.1 5506 D 196162 CDS YP_921243.1 119714278 4598357 6391..8526 1 NC_008699.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 8526 gyrB 4598357 gyrB Nocardioides sp. JS614 DNA gyrase subunit B YP_921243.1 6391 D 196162 CDS YP_921244.1 119714279 4598358 8578..11346 1 NC_008699.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 11346 4598358 Noca_0007 Nocardioides sp. JS614 DNA gyrase subunit A YP_921244.1 8578 D 196162 CDS YP_921245.1 119714280 4598359 11346..11864 1 NC_008699.1 KEGG: sma:SAV4323 hypothetical protein; hypothetical protein 11864 4598359 Noca_0008 Nocardioides sp. JS614 hypothetical protein YP_921245.1 11346 D 196162 CDS YP_921246.1 119714281 4598362 12546..13964 1 NC_008699.1 PFAM: plasmid pRiA4b ORF-3 family protein; KEGG: cef:CE1215 hypothetical protein; plasmid pRiA4b ORF-3 family protein 13964 4598362 Noca_0009 Nocardioides sp. JS614 plasmid pRiA4b ORF-3 family protein YP_921246.1 12546 D 196162 CDS YP_921247.1 119714282 4598363 complement(13975..14715) 1 NC_008699.1 PFAM: fatty acid hydroxylase; KEGG: mmc:Mmcs_2728 fatty acid hydroxylase; fatty acid hydroxylase 14715 4598363 Noca_0010 Nocardioides sp. JS614 fatty acid hydroxylase YP_921247.1 13975 R 196162 CDS YP_921248.1 119714283 4598364 complement(14712..15461) 1 NC_008699.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: mmc:Mmcs_2727 regulatory protein GntR, HTH; GntR family transcriptional regulator 15461 4598364 Noca_0011 Nocardioides sp. JS614 GntR family transcriptional regulator YP_921248.1 14712 R 196162 CDS YP_921249.1 119714284 4598365 15502..16314 1 NC_008699.1 KEGG: tfu:Tfu_0164 hypothetical protein; hypothetical protein 16314 4598365 Noca_0012 Nocardioides sp. JS614 hypothetical protein YP_921249.1 15502 D 196162 CDS YP_921250.1 119714285 4598366 16324..16671 1 NC_008699.1 KEGG: sma:SAV2833 hypothetical protein; hypothetical protein 16671 4598366 Noca_0013 Nocardioides sp. JS614 hypothetical protein YP_921250.1 16324 D 196162 CDS YP_921251.1 119714286 4598367 16701..17573 1 NC_008699.1 PFAM: Patatin; KEGG: fal:FRAAL0742 hypothetical protein; patatin 17573 4598367 Noca_0014 Nocardioides sp. JS614 patatin YP_921251.1 16701 D 196162 CDS YP_921252.1 119714287 4598368 17570..18589 1 NC_008699.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: fal:FRAAL0743 hypothetical protein; putative signal peptide; putative acyltransferase domain; phospholipid/glycerol acyltransferase 18589 4598368 Noca_0015 Nocardioides sp. JS614 phospholipid/glycerol acyltransferase YP_921252.1 17570 D 196162 CDS YP_921253.1 119714288 4598369 complement(18611..19255) 1 NC_008699.1 KEGG: aor:AO090120000081 predicted protein Pfam: IncA TolA PROSITE: ALA_RICH ARG_RICH GLU_RICH GLY_RICH; hypothetical protein 19255 4598369 Noca_0016 Nocardioides sp. JS614 hypothetical protein YP_921253.1 18611 R 196162 CDS YP_921254.1 119714289 4598370 19412..19924 1 NC_008699.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: pac:PPA0718 probable peptidyl-prolyl cis-trans isomerase A; peptidyl-prolyl isomerase 19924 4598370 Noca_0017 Nocardioides sp. JS614 peptidyl-prolyl isomerase YP_921254.1 19412 D 196162 CDS YP_921255.1 119714290 4598371 19941..20861 1 NC_008699.1 PFAM: Rhomboid family protein; KEGG: mmc:Mmcs_5148 rhomboid-like protein; rhomboid family protein 20861 4598371 Noca_0018 Nocardioides sp. JS614 rhomboid family protein YP_921255.1 19941 D 196162 CDS YP_921256.1 119714291 4598372 21062..22003 1 NC_008699.1 KEGG: fra:Francci3_0932 hypothetical protein; hypothetical protein 22003 4598372 Noca_0019 Nocardioides sp. JS614 hypothetical protein YP_921256.1 21062 D 196162 CDS YP_921257.1 119714292 4598373 complement(22374..22832) 1 NC_008699.1 hypothetical protein 22832 4598373 Noca_0020 Nocardioides sp. JS614 hypothetical protein YP_921257.1 22374 R 196162 CDS YP_921258.1 119714293 4598374 22883..23704 1 NC_008699.1 PFAM: protein of unknown function DUF881; KEGG: pac:PPA0183 membrane spanning protein DUF881; hypothetical protein 23704 4598374 Noca_0021 Nocardioides sp. JS614 hypothetical protein YP_921258.1 22883 D 196162 CDS YP_921259.1 119714294 4598375 complement(23664..25457) 1 NC_008699.1 PFAM: protein kinase; PASTA domain containing protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: tfu:Tfu_3066 tyrosine protein kinase:serine/threonine protein kinase:PASTA; protein kinase 25457 4598375 Noca_0022 Nocardioides sp. JS614 protein kinase YP_921259.1 23664 R 196162 CDS YP_921260.1 119714295 4598376 complement(25454..26899) 1 NC_008699.1 PFAM: protein of unknown function RIO1; protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: tfu:Tfu_3065 tyrosine protein kinase:serine/threonine protein kinase; protein kinase 26899 4598376 Noca_0023 Nocardioides sp. JS614 protein kinase YP_921260.1 25454 R 196162 CDS YP_921261.1 119714296 4598377 complement(26896..28368) 1 NC_008699.1 PFAM: penicillin-binding protein, transpeptidase; KEGG: fal:FRAAL6753 putative penicillin-binding protein PbpA; peptidoglycan glycosyltransferase 28368 4598377 Noca_0024 Nocardioides sp. JS614 peptidoglycan glycosyltransferase YP_921261.1 26896 R 196162 CDS YP_921262.1 119714297 4598378 complement(28365..29771) 1 NC_008699.1 PFAM: cell cycle protein; KEGG: fal:FRAAL6752 putative cell division protein FtsW; cell cycle protein 29771 4598378 Noca_0025 Nocardioides sp. JS614 cell cycle protein YP_921262.1 28365 R 196162 CDS YP_921263.1 119714298 4598379 complement(29771..31087) 1 NC_008699.1 PFAM: protein phosphatase 2C domain protein; KEGG: sco:SCO3845 putative protein phosphatase; protein phosphatase 2C domain-containing protein 31087 4598379 Noca_0026 Nocardioides sp. JS614 protein phosphatase 2C domain-containing protein YP_921263.1 29771 R 196162 CDS YP_921264.1 119714299 4598380 complement(31092..31568) 1 NC_008699.1 PFAM: Forkhead-associated protein; KEGG: tfu:Tfu_3061 FHA domain protein; forkhead-associated protein 31568 4598380 Noca_0027 Nocardioides sp. JS614 forkhead-associated protein YP_921264.1 31092 R 196162 CDS YP_921265.1 119714300 4598381 complement(31571..32287) 1 NC_008699.1 PFAM: Forkhead-associated protein; KEGG: pac:PPA0189 conserved protein containing FHA domain; forkhead-associated protein 32287 4598381 Noca_0028 Nocardioides sp. JS614 forkhead-associated protein YP_921265.1 31571 R 196162 CDS YP_921266.1 119714301 4598383 32794..33363 1 NC_008699.1 PFAM: GCN5-related N-acetyltransferase; FR47 domain protein; KEGG: sco:SCO4496 acetyltransferase; N-acetyltransferase GCN5 33363 4598383 Noca_0029 Nocardioides sp. JS614 N-acetyltransferase GCN5 YP_921266.1 32794 D 196162 CDS YP_921267.1 119714302 4598384 complement(33397..34605) 1 NC_008699.1 PFAM: major facilitator superfamily MFS_1; KEGG: rxy:Rxyl_2414 major facilitator superfamily MFS_1; major facilitator transporter 34605 4598384 Noca_0030 Nocardioides sp. JS614 major facilitator transporter YP_921267.1 33397 R 196162 CDS YP_921268.1 119714303 4598385 34746..35228 1 NC_008699.1 PFAM: MaoC domain protein dehydratase; KEGG: bja:bll6394 putative monoamine oxidase regulatory protein; dehydratase 35228 4598385 Noca_0031 Nocardioides sp. JS614 dehydratase YP_921268.1 34746 D 196162 CDS YP_921269.1 119714304 4598386 35225..36823 1 NC_008699.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; KEGG: mka:MK0828 succinate dehydrogenase/fumarate reductase, flavoprotein subunit; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 36823 4598386 Noca_0032 Nocardioides sp. JS614 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_921269.1 35225 D 196162 CDS YP_921270.1 119714305 4598387 36843..37760 1 NC_008699.1 PFAM: dihydrodipicolinate synthetase; KEGG: sco:SCO1889 dihydropicolinate synthase; dihydrodipicolinate synthetase 37760 4598387 Noca_0033 Nocardioides sp. JS614 dihydrodipicolinate synthetase YP_921270.1 36843 D 196162 CDS YP_921271.1 119714306 4598388 37757..38983 1 NC_008699.1 catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate; hydroxyglutarate oxidase 38983 4598388 Noca_0034 Nocardioides sp. JS614 hydroxyglutarate oxidase YP_921271.1 37757 D 196162 CDS YP_921272.1 119714307 4598389 39113..39805 1 NC_008699.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: sco:SCO6565 transcriptional regulator; GntR family transcriptional regulator 39805 4598389 Noca_0035 Nocardioides sp. JS614 GntR family transcriptional regulator YP_921272.1 39113 D 196162 CDS YP_921273.1 119714308 4598390 complement(39830..41461) 1 NC_008699.1 PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: rxy:Rxyl_2477 thiamine pyrophosphate enzyme-like TPP binding region; thiamine pyrophosphate binding domain-containing protein 41461 4598390 Noca_0036 Nocardioides sp. JS614 thiamine pyrophosphate binding domain-containing protein YP_921273.1 39830 R 196162 CDS YP_921274.1 119714309 4598391 complement(41511..43124) 1 NC_008699.1 PFAM: aldehyde dehydrogenase; KEGG: nfa:nfa35030 putative aldehyde dehydrogenase; aldehyde dehydrogenase 43124 4598391 Noca_0037 Nocardioides sp. JS614 aldehyde dehydrogenase YP_921274.1 41511 R 196162 CDS YP_921275.1 119714310 4600089 complement(43121..43837) 1 NC_008699.1 PFAM: Dimethylmenaquinone methyltransferase; KEGG: pol:Bpro_2296 dimethylmenaquinone methyltransferase; hypothetical protein 43837 4600089 Noca_0038 Nocardioides sp. JS614 hypothetical protein YP_921275.1 43121 R 196162 CDS YP_921276.1 119714311 4600090 43915..45135 1 NC_008699.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: mes:Meso_2971 L-carnitine dehydratase/bile acid-inducible protein F; formyl-CoA transferase 45135 4600090 Noca_0039 Nocardioides sp. JS614 formyl-CoA transferase YP_921276.1 43915 D 196162 CDS YP_921277.1 119714312 4600091 45212..46573 1 NC_008699.1 PFAM: MmgE/PrpD family protein; KEGG: bur:Bcep18194_B1168 MmgE/PrpD family protein; MmgE/PrpD family protein 46573 4600091 Noca_0040 Nocardioides sp. JS614 MmgE/PrpD family protein YP_921277.1 45212 D 196162 CDS YP_921278.1 119714313 4600092 46643..48025 1 NC_008699.1 PFAM: extracellular solute-binding protein, family 1; KEGG: mes:Meso_4520 extracellular solute-binding protein, family 1; extracellular solute-binding protein 48025 4600092 Noca_0041 Nocardioides sp. JS614 extracellular solute-binding protein YP_921278.1 46643 D 196162 CDS YP_921279.1 119714314 4600093 48055..49050 1 NC_008699.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lin:lin0218 similar to sugar ABC transporters, permease proteins; binding-protein-dependent transport system inner membrane protein 49050 4600093 Noca_0042 Nocardioides sp. JS614 binding-protein-dependent transport system inner membrane protein YP_921279.1 48055 D 196162 CDS YP_921280.1 119714315 4600094 49062..49934 1 NC_008699.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tte:TTE1936 sugar permeases; binding-protein-dependent transport system inner membrane protein 49934 4600094 Noca_0043 Nocardioides sp. JS614 binding-protein-dependent transport system inner membrane protein YP_921280.1 49062 D 196162 CDS YP_921281.1 119714316 4600095 49963..50724 1 NC_008699.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ape:APE1484 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase; short chain enoyl-CoA hydratase 50724 4600095 Noca_0044 Nocardioides sp. JS614 short chain enoyl-CoA hydratase YP_921281.1 49963 D 196162 CDS YP_921282.1 119714317 4600096 50721..51641 1 NC_008699.1 PFAM: MaoC domain protein dehydratase; dehydratase 51641 4600096 Noca_0045 Nocardioides sp. JS614 dehydratase YP_921282.1 50721 D 196162 CDS YP_921283.1 119714318 4600097 complement(51689..52852) 1 NC_008699.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: ppu:PP_3725 acyl-CoA dehydrogenase, putative; acyl-CoA dehydrogenase domain-containing protein 52852 4600097 Noca_0046 Nocardioides sp. JS614 acyl-CoA dehydrogenase domain-containing protein YP_921283.1 51689 R 196162 CDS YP_921284.1 119714319 4600098 complement(52863..54101) 1 NC_008699.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: mes:Meso_2971 L-carnitine dehydratase/bile acid-inducible protein F; formyl-CoA transferase 54101 4600098 Noca_0047 Nocardioides sp. JS614 formyl-CoA transferase YP_921284.1 52863 R 196162 CDS YP_921285.1 119714320 4600099 complement(54476..55060) 1 NC_008699.1 PFAM: GntR domain protein; KEGG: sco:SCO1410 GntR-family transcriptional regulator; GntR family transcriptional regulator 55060 4600099 Noca_0048 Nocardioides sp. JS614 GntR family transcriptional regulator YP_921285.1 54476 R 196162 CDS YP_921286.1 119714321 4600101 56595..58040 1 NC_008699.1 TIGRFAM: Dyp-type peroxidase family; KEGG: rpc:RPC_1956 Tat-translocated enzyme; Dyp-type peroxidase family protein 58040 4600101 Noca_0050 Nocardioides sp. JS614 Dyp-type peroxidase family protein YP_921286.1 56595 D 196162 CDS YP_921287.1 119714322 4600102 58431..59273 1 NC_008699.1 KEGG: pst:PSPTO_4772 hypothetical protein; hypothetical protein 59273 4600102 Noca_0051 Nocardioides sp. JS614 hypothetical protein YP_921287.1 58431 D 196162 CDS YP_921288.1 119714323 4600103 59586..60119 1 NC_008699.1 hypothetical protein 60119 4600103 Noca_0052 Nocardioides sp. JS614 hypothetical protein YP_921288.1 59586 D 196162 CDS YP_921289.1 119714324 4600104 complement(60327..60929) 1 NC_008699.1 hypothetical protein 60929 4600104 Noca_0053 Nocardioides sp. JS614 hypothetical protein YP_921289.1 60327 R 196162 CDS YP_921290.1 119714325 4600105 complement(61631..62167) 1 NC_008699.1 hypothetical protein 62167 4600105 Noca_0054 Nocardioides sp. JS614 hypothetical protein YP_921290.1 61631 R 196162 CDS YP_921291.1 119714326 4600106 62400..62666 1 NC_008699.1 KEGG: sag:SAG0550 hypothetical protein; hypothetical protein 62666 4600106 Noca_0055 Nocardioides sp. JS614 hypothetical protein YP_921291.1 62400 D 196162 CDS YP_921292.1 119714327 4600107 complement(62748..63995) 1 NC_008699.1 PFAM: Glycosyl hydrolase family 32, N terminal domain protein; SMART: glycoside hydrolase, family 32; KEGG: hma:rrnAC1479 sucrose-6-phosphate hydrolase; glycosyl hydrolase family 32 protein 63995 4600107 Noca_0056 Nocardioides sp. JS614 glycosyl hydrolase family 32 protein YP_921292.1 62748 R 196162 CDS YP_921293.1 119714328 4600108 complement(63995..65443) 1 NC_008699.1 KEGG: afm:Afu5g00510 hypothetical protein; hypothetical protein 65443 4600108 Noca_0057 Nocardioides sp. JS614 hypothetical protein YP_921293.1 63995 R 196162 CDS YP_921294.1 119714329 4600109 65532..66548 1 NC_008699.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sma:SAV6288 LacI-family transcriptional regulator; LacI family transcriptional regulator 66548 4600109 Noca_0058 Nocardioides sp. JS614 LacI family transcriptional regulator YP_921294.1 65532 D 196162 CDS YP_921295.1 119714330 4600110 66676..67995 1 NC_008699.1 PFAM: extracellular solute-binding protein, family 1; KEGG: oih:OB0774 sugar ABC transporter sugar-binding protein; extracellular solute-binding protein 67995 4600110 Noca_0059 Nocardioides sp. JS614 extracellular solute-binding protein YP_921295.1 66676 D 196162 CDS YP_921296.1 119714331 4600111 68116..68985 1 NC_008699.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB0775 sugar ABC transporter permease; binding-protein-dependent transport systems inner membrane component 68985 4600111 Noca_0060 Nocardioides sp. JS614 binding-protein-dependent transport systems inner membrane component YP_921296.1 68116 D 196162 CDS YP_921297.1 119714332 4600112 69064..69957 1 NC_008699.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB0776 sugar ABC transporter permease; binding-protein-dependent transport system inner membrane protein 69957 4600112 Noca_0061 Nocardioides sp. JS614 binding-protein-dependent transport system inner membrane protein YP_921297.1 69064 D 196162 CDS YP_921298.1 119714333 4600113 70016..70936 1 NC_008699.1 PFAM: PfkB domain protein; KEGG: rha:RHA1_ro02811 fructokinase; ribokinase-like domain-containing protein 70936 4600113 Noca_0062 Nocardioides sp. JS614 ribokinase-like domain-containing protein YP_921298.1 70016 D 196162 CDS YP_921299.1 119714334 4600114 71344..71673 1 NC_008699.1 PFAM: transposase IS3/IS911 family protein; KEGG: mbo:Mb2839c probable transposase; transposase IS3/IS911 family protein 71673 4600114 Noca_0063 Nocardioides sp. JS614 transposase IS3/IS911 family protein YP_921299.1 71344 D 196162 CDS YP_921300.1 119714335 4600116 72341..73780 1 NC_008699.1 PFAM: Integrase, catalytic region; KEGG: mmc:Mmcs_5505 integrase, catalytic region; integrase catalytic subunit 73780 4600116 Noca_0065 Nocardioides sp. JS614 integrase catalytic subunit YP_921300.1 72341 D 196162 CDS YP_921301.1 119714336 4600119 complement(76344..77522) 1 NC_008699.1 KEGG: ret:RHE_PE00355 putative inulin fructotransferase protein; inulin fructotransferase 77522 4600119 Noca_0068 Nocardioides sp. JS614 inulin fructotransferase YP_921301.1 76344 R 196162 CDS YP_921302.1 119714337 4600120 complement(79306..79551) 1 NC_008699.1 hypothetical protein 79551 4600120 Noca_0069 Nocardioides sp. JS614 hypothetical protein YP_921302.1 79306 R 196162 CDS YP_921303.1 119714338 4600121 complement(79607..80230) 1 NC_008699.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: sco:SCO3362 hypothetical protein; lysine exporter protein LysE/YggA 80230 4600121 Noca_0070 Nocardioides sp. JS614 lysine exporter protein LysE/YggA YP_921303.1 79607 R 196162 CDS YP_921304.1 119714339 4600122 80377..80844 1 NC_008699.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: rha:RHA1_ro03337 probable leucine-responsive regulator; AsnC family transcriptional regulator 80844 4600122 Noca_0071 Nocardioides sp. JS614 AsnC family transcriptional regulator YP_921304.1 80377 D 196162 CDS YP_921305.1 119714340 4600123 complement(81382..82302) 1 NC_008699.1 PFAM: ornithine cyclodeaminase/mu-crystallin; Shikimate/quinate 5-dehydrogenase; KEGG: bcz:BCZK0803 ornithine cyclodeaminase; ornithine cyclodeaminase 82302 4600123 Noca_0072 Nocardioides sp. JS614 ornithine cyclodeaminase YP_921305.1 81382 R 196162 CDS YP_921306.1 119714341 4600124 82532..83164 1 NC_008699.1 PFAM: helix-turn-helix domain protein; KEGG: nfa:nfa13110 putative DNA-binding protein; helix-turn-helix domain-containing protein 83164 4600124 Noca_0073 Nocardioides sp. JS614 helix-turn-helix domain-containing protein YP_921306.1 82532 D 196162 CDS YP_921307.1 119714342 4600125 83161..83565 1 NC_008699.1 KEGG: shm:Shewmr7_0115 hypothetical protein; hypothetical protein 83565 4600125 Noca_0074 Nocardioides sp. JS614 hypothetical protein YP_921307.1 83161 D 196162 CDS YP_921308.1 119714343 4600126 83670..84680 1 NC_008699.1 KEGG: cgb:cg1413 secreted sugar-binding protein; sugar ABC transporter periplasmic component-like protein 84680 4600126 Noca_0075 Nocardioides sp. JS614 sugar ABC transporter periplasmic component-like protein YP_921308.1 83670 D 196162 CDS YP_921309.1 119714344 4600049 84705..86228 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO0811 putative ABC transporter ATP-binding protein; ABC transporter-like protein 86228 4600049 Noca_0076 Nocardioides sp. JS614 ABC transporter-like protein YP_921309.1 84705 D 196162 CDS YP_921310.1 119714345 4600050 86221..87216 1 NC_008699.1 PFAM: inner-membrane translocator; KEGG: sha:SH0178 ribose ABC transporter permease; inner-membrane translocator 87216 4600050 Noca_0077 Nocardioides sp. JS614 inner-membrane translocator YP_921310.1 86221 D 196162 CDS YP_921311.1 119714346 4600051 87213..88028 1 NC_008699.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bpm:BURPS1710b_3485 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 88028 4600051 Noca_0078 Nocardioides sp. JS614 short-chain dehydrogenase/reductase SDR YP_921311.1 87213 D 196162 CDS YP_921312.1 119714347 4600052 88141..90204 1 NC_008699.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: mta:Moth_1967 5-oxoprolinase (ATP-hydrolyzing); 5-oxoprolinase 90204 4600052 Noca_0079 Nocardioides sp. JS614 5-oxoprolinase YP_921312.1 88141 D 196162 CDS YP_921313.1 119714348 4600053 90197..91915 1 NC_008699.1 PFAM: Hydantoinase B/oxoprolinase; KEGG: gka:GK2893 N-methylhydantoinase B (ATP-hydrolyzing); 5-oxoprolinase 91915 4600053 Noca_0080 Nocardioides sp. JS614 5-oxoprolinase YP_921313.1 90197 D 196162 CDS YP_921314.1 119714349 4600054 91912..92895 1 NC_008699.1 PFAM: peptidase M19, renal dipeptidase; KEGG: mlo:mlr6286 similar to dipeptidase; peptidase M19, renal dipeptidase 92895 4600054 Noca_0081 Nocardioides sp. JS614 peptidase M19, renal dipeptidase YP_921314.1 91912 D 196162 CDS YP_921315.1 119714350 4600055 92896..94077 1 NC_008699.1 PFAM: FAD dependent oxidoreductase; KEGG: sma:SAV1734 oxidoreductase; FAD dependent oxidoreductase 94077 4600055 Noca_0082 Nocardioides sp. JS614 FAD dependent oxidoreductase YP_921315.1 92896 D 196162 CDS YP_921316.1 119714351 4600056 94074..94412 1 NC_008699.1 KEGG: sma:SAV1733 hypothetical protein; hypothetical protein 94412 4600056 Noca_0083 Nocardioides sp. JS614 hypothetical protein YP_921316.1 94074 D 196162 CDS YP_921317.1 119714352 4600057 94405..95871 1 NC_008699.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; BFD domain protein [2Fe-2S]-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sco:SCO6291 secreted oxidase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 95871 4600057 Noca_0084 Nocardioides sp. JS614 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_921317.1 94405 D 196162 CDS YP_921318.1 119714353 4600058 95879..96811 1 NC_008699.1 PFAM: dihydrodipicolinate synthetase; KEGG: sma:SAV1731 putative dihydrodipicolinate synthase; dihydrodipicolinate synthetase 96811 4600058 Noca_0085 Nocardioides sp. JS614 dihydrodipicolinate synthetase YP_921318.1 95879 D 196162 CDS YP_921319.1 119714354 4600059 96812..98341 1 NC_008699.1 PFAM: aldehyde dehydrogenase; KEGG: rha:RHA1_ro02898 aldehyde dehydrogenase (NADP+); aldehyde dehydrogenase 98341 4600059 Noca_0086 Nocardioides sp. JS614 aldehyde dehydrogenase YP_921319.1 96812 D 196162 CDS YP_921320.1 119714355 4600060 complement(98382..99533) 1 NC_008699.1 KEGG: sma:SAV2725 transcriptional regulator; CdaR family transcriptional regulator 99533 4600060 Noca_0087 Nocardioides sp. JS614 CdaR family transcriptional regulator YP_921320.1 98382 R 196162 CDS YP_921321.1 119714356 4600061 99617..100543 1 NC_008699.1 PFAM: Proline dehydrogenase; KEGG: tfu:Tfu_0434 proline dehydrogenase; L-proline dehydrogenase 100543 4600061 Noca_0088 Nocardioides sp. JS614 L-proline dehydrogenase YP_921321.1 99617 D 196162 CDS YP_921322.1 119714357 4600062 100572..102200 1 NC_008699.1 TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: tfu:Tfu_0433 delta-1-pyrroline-5-carboxylate dehydrogenase 1; delta-1-pyrroline-5-carboxylate dehydrogenase 102200 4600062 Noca_0089 Nocardioides sp. JS614 delta-1-pyrroline-5-carboxylate dehydrogenase YP_921322.1 100572 D 196162 CDS YP_921323.1 119714358 4600063 complement(102208..102804) 1 NC_008699.1 PFAM: beta-lactamase domain protein; KEGG: plu:plu2238 hypothetical protein; beta-lactamase domain-containing protein 102804 4600063 Noca_0090 Nocardioides sp. JS614 beta-lactamase domain-containing protein YP_921323.1 102208 R 196162 CDS YP_921324.1 119714359 4600065 103558..104406 1 NC_008699.1 TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: tfu:Tfu_1968 allophanate hydrolase subunit 2; urea amidolyase-like protein 104406 4600065 Noca_0092 Nocardioides sp. JS614 urea amidolyase-like protein YP_921324.1 103558 D 196162 CDS YP_921325.1 119714360 4600066 104442..105254 1 NC_008699.1 PFAM: protein of unknown function DUF1445; KEGG: pst:PSPTO_5379 hypothetical protein; hypothetical protein 105254 4600066 Noca_0093 Nocardioides sp. JS614 hypothetical protein YP_921325.1 104442 D 196162 CDS YP_921326.1 119714361 4600067 105424..106143 1 NC_008699.1 PFAM: Asp/Glu racemase; KEGG: chy:CHY_1338 hydantoin racemase; Asp/Glu racemase 106143 4600067 Noca_0094 Nocardioides sp. JS614 Asp/Glu racemase YP_921326.1 105424 D 196162 CDS YP_921327.1 119714362 4600068 106207..107760 1 NC_008699.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: mlo:mll9131 hydantoinase; hydantoinase/oxoprolinase 107760 4600068 Noca_0095 Nocardioides sp. JS614 hydantoinase/oxoprolinase YP_921327.1 106207 D 196162 CDS YP_921328.1 119714363 4600069 107763..108863 1 NC_008699.1 PFAM: protein of unknown function DUF917; KEGG: mlo:mll9130 hypothetical protein; hypothetical protein 108863 4600069 Noca_0096 Nocardioides sp. JS614 hypothetical protein YP_921328.1 107763 D 196162 CDS YP_921329.1 119714364 4600070 complement(108849..110423) 1 NC_008699.1 KEGG: sco:SCO1052 regulatory protein; regulator of polyketide synthase expression-like 110423 4600070 Noca_0097 Nocardioides sp. JS614 regulator of polyketide synthase expression-like YP_921329.1 108849 R 196162 CDS YP_921330.1 119714365 4600071 complement(110420..111496) 1 NC_008699.1 PFAM: protein of unknown function DUF917; KEGG: mes:Meso_1849 protein of unknown function DUF917; hypothetical protein 111496 4600071 Noca_0098 Nocardioides sp. JS614 hypothetical protein YP_921330.1 110420 R 196162 CDS YP_921331.1 119714366 4600072 111687..112889 1 NC_008699.1 KEGG: rha:RHA1_ro02908 possible ABC sugar transporter, substrate binding component; sugar ABC transporter periplasmic component-like protein 112889 4600072 Noca_0099 Nocardioides sp. JS614 sugar ABC transporter periplasmic component-like protein YP_921331.1 111687 D 196162 CDS YP_921332.1 119714367 4600073 112886..114469 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rha:RHA1_ro09082 ABC sugar transporter, ATP-binding component; ABC transporter-like protein 114469 4600073 Noca_0100 Nocardioides sp. JS614 ABC transporter-like protein YP_921332.1 112886 D 196162 CDS YP_921333.1 119714368 4600074 114503..115531 1 NC_008699.1 PFAM: inner-membrane translocator; KEGG: rha:RHA1_ro11174 ABC sugar transporter, permease component; inner-membrane translocator 115531 4600074 Noca_0101 Nocardioides sp. JS614 inner-membrane translocator YP_921333.1 114503 D 196162 CDS YP_921334.1 119714369 4600075 115531..116544 1 NC_008699.1 PFAM: peptidase M19, renal dipeptidase; KEGG: dsy:DSY1937 hypothetical protein; thermostable dipeptidase 116544 4600075 Noca_0102 Nocardioides sp. JS614 thermostable dipeptidase YP_921334.1 115531 D 196162 CDS YP_921335.1 119714370 4600076 116718..117023 1 NC_008699.1 hypothetical protein 117023 4600076 Noca_0103 Nocardioides sp. JS614 hypothetical protein YP_921335.1 116718 D 196162 CDS YP_921336.1 119714371 4600077 117020..117724 1 NC_008699.1 hypothetical protein 117724 4600077 Noca_0104 Nocardioides sp. JS614 hypothetical protein YP_921336.1 117020 D 196162 CDS YP_921337.1 119714372 4600078 complement(118138..118839) 1 NC_008699.1 KEGG: rha:RHA1_ro00813 possible lipoate-protein ligase A; putative lipoate-protein ligase A 118839 4600078 Noca_0105 Nocardioides sp. JS614 putative lipoate-protein ligase A YP_921337.1 118138 R 196162 CDS YP_921338.1 119714373 4600079 119154..119783 1 NC_008699.1 PFAM: peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins; KEGG: mmc:Mmcs_0342 peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins; peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins 119783 4600079 Noca_0106 Nocardioides sp. JS614 peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins YP_921338.1 119154 D 196162 CDS YP_921339.1 119714374 4600080 119846..120730 1 NC_008699.1 PFAM: aldo/keto reductase; KEGG: sma:SAV1050 oxidoreductase; aldo/keto reductase 120730 4600080 Noca_0107 Nocardioides sp. JS614 aldo/keto reductase YP_921339.1 119846 D 196162 CDS YP_921340.1 119714375 4600081 complement(120754..121770) 1 NC_008699.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: dge:Dgeo_2864 alcohol dehydrogenase GroES-like; alcohol dehydrogenase 121770 4600081 Noca_0108 Nocardioides sp. JS614 alcohol dehydrogenase YP_921340.1 120754 R 196162 CDS YP_921341.1 119714376 4600082 121874..124267 1 NC_008699.1 KEGG: sco:SCO1740 hypothetical protein; hypothetical protein 124267 4600082 Noca_0109 Nocardioides sp. JS614 hypothetical protein YP_921341.1 121874 D 196162 CDS YP_921342.1 119714377 4600083 124300..124935 1 NC_008699.1 hypothetical protein 124935 4600083 Noca_0110 Nocardioides sp. JS614 hypothetical protein YP_921342.1 124300 D 196162 CDS YP_921343.1 119714378 4600084 complement(124963..125349) 1 NC_008699.1 hypothetical protein 125349 4600084 Noca_0111 Nocardioides sp. JS614 hypothetical protein YP_921343.1 124963 R 196162 CDS YP_921344.1 119714379 4600085 125387..125824 1 NC_008699.1 PFAM: cyclase/dehydrase; cyclase/dehydrase 125824 4600085 Noca_0112 Nocardioides sp. JS614 cyclase/dehydrase YP_921344.1 125387 D 196162 CDS YP_921345.1 119714380 4600086 126048..127421 1 NC_008699.1 PFAM: amino acid-binding ACT domain protein; malic enzyme domain protein; malic enzyme, NAD-binding; KEGG: tfu:Tfu_2390 malate dehydrogenase (oxaloacetate decarboxylating); malate dehydrogenase 127421 4600086 Noca_0113 Nocardioides sp. JS614 malate dehydrogenase YP_921345.1 126048 D 196162 CDS YP_921346.1 119714381 4600087 complement(127444..129465) 1 NC_008699.1 PFAM: MMPL domain protein; KEGG: mmc:Mmcs_0519 MmpL; MMPL domain-containing protein 129465 4600087 Noca_0114 Nocardioides sp. JS614 MMPL domain-containing protein YP_921346.1 127444 R 196162 CDS YP_921347.1 119714382 4600088 129511..130020 1 NC_008699.1 PFAM: regulatory protein, MarR; KEGG: rxy:Rxyl_1740 transcriptional regulator, MarR family; regulatory protein MarR 130020 4600088 Noca_0115 Nocardioides sp. JS614 regulatory protein MarR YP_921347.1 129511 D 196162 CDS YP_921348.1 119714383 4597565 complement(129996..130754) 1 NC_008699.1 PFAM: ROK family protein; KEGG: lxx:Lxx09960 glucokinase; polyphosphate glucokinase 130754 4597565 Noca_0116 Nocardioides sp. JS614 polyphosphate glucokinase YP_921348.1 129996 R 196162 CDS YP_921349.1 119714384 4597566 130799..131413 1 NC_008699.1 PFAM: transcriptional regulator PadR family protein; KEGG: nfa:nfa31300 putative transcriptional regulator; PadR family transcriptional regulator 131413 4597566 Noca_0117 Nocardioides sp. JS614 PadR family transcriptional regulator YP_921349.1 130799 D 196162 CDS YP_921350.1 119714385 4597567 complement(131399..132259) 1 NC_008699.1 PFAM: protein of unknown function DUF88; KEGG: dvu:DVU0091 hypothetical protein; hypothetical protein 132259 4597567 Noca_0118 Nocardioides sp. JS614 hypothetical protein YP_921350.1 131399 R 196162 CDS YP_921351.1 119714386 4597568 132342..133082 1 NC_008699.1 PFAM: protein of unknown function DUF1503; KEGG: sco:SCO1068 hypothetical protein; hypothetical protein 133082 4597568 Noca_0119 Nocardioides sp. JS614 hypothetical protein YP_921351.1 132342 D 196162 CDS YP_921352.1 119714387 4597569 133252..134268 1 NC_008699.1 KEGG: tfu:Tfu_1447 ABC-type multidrug transport system ATPase component; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; daunorubicin resistance ABC transporter ATPase subunit 134268 4597569 Noca_0120 Nocardioides sp. JS614 daunorubicin resistance ABC transporter ATPase subunit YP_921352.1 133252 D 196162 CDS YP_921353.1 119714388 4597570 134268..135026 1 NC_008699.1 PFAM: ABC-2 type transporter; KEGG: sco:SCO5382 putative ABC transporter, integral membrane subunit; ABC transporter 135026 4597570 Noca_0121 Nocardioides sp. JS614 ABC transporter YP_921353.1 134268 D 196162 CDS YP_921354.1 119714389 4597571 135349..136794 1 NC_008699.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; fatty acid desaturase; KEGG: nfa:nfa46180 putative alkane-1-monooxygenase; alkane 1-monooxygenase 136794 4597571 Noca_0122 Nocardioides sp. JS614 alkane 1-monooxygenase YP_921354.1 135349 D 196162 CDS YP_921355.1 119714390 4597572 136857..137420 1 NC_008699.1 PFAM: regulatory protein, TetR; KEGG: mmc:Mmcs_3220 transcriptional regulator, TetR family; regulatory protein TetR 137420 4597572 Noca_0123 Nocardioides sp. JS614 regulatory protein TetR YP_921355.1 136857 D 196162 CDS YP_921356.1 119714391 4597573 137752..139167 1 NC_008699.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV4524 transmembrane efflux protein; EmrB/QacA family drug resistance transporter 139167 4597573 Noca_0124 Nocardioides sp. JS614 EmrB/QacA family drug resistance transporter YP_921356.1 137752 D 196162 CDS YP_921357.1 119714392 4597574 139333..139515 1 NC_008699.1 hypothetical protein 139515 4597574 Noca_0125 Nocardioides sp. JS614 hypothetical protein YP_921357.1 139333 D 196162 CDS YP_921358.1 119714393 4597575 139639..139860 1 NC_008699.1 hypothetical protein 139860 4597575 Noca_0126 Nocardioides sp. JS614 hypothetical protein YP_921358.1 139639 D 196162 CDS YP_921359.1 119714394 4597576 complement(139877..140725) 1 NC_008699.1 TIGRFAM: formyltetrahydrofolate deformylase; PFAM: formyl transferase domain protein; amino acid-binding ACT domain protein; KEGG: bte:BTH_I0496 formyltetrahydrofolate deformylase; formyltetrahydrofolate deformylase 140725 4597576 Noca_0127 Nocardioides sp. JS614 formyltetrahydrofolate deformylase YP_921359.1 139877 R 196162 CDS YP_921360.1 119714395 4597577 140747..142054 1 NC_008699.1 KEGG: nha:Nham_2367 hypothetical protein; hypothetical protein 142054 4597577 Noca_0128 Nocardioides sp. JS614 hypothetical protein YP_921360.1 140747 D 196162 CDS YP_921361.1 119714396 4597578 142051..142431 1 NC_008699.1 hypothetical protein 142431 4597578 Noca_0129 Nocardioides sp. JS614 hypothetical protein YP_921361.1 142051 D 196162 CDS YP_921362.1 119714397 4597579 142477..143439 1 NC_008699.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: mmc:Mmcs_1554 alcohol dehydrogenase, zinc-binding protein; alcohol dehydrogenase 143439 4597579 Noca_0130 Nocardioides sp. JS614 alcohol dehydrogenase YP_921362.1 142477 D 196162 CDS YP_921363.1 119714398 4597580 143575..145524 1 NC_008699.1 PFAM: peptidase M13, neprilysin; peptidase M13; KEGG: fal:FRAAL4107 zinc metalloendopeptidase; endothelin-converting protein 1 145524 4597580 Noca_0131 Nocardioides sp. JS614 endothelin-converting protein 1 YP_921363.1 143575 D 196162 CDS YP_921364.1 119714399 4597581 complement(145778..146350) 1 NC_008699.1 hypothetical protein 146350 4597581 Noca_0132 Nocardioides sp. JS614 hypothetical protein YP_921364.1 145778 R 196162 CDS YP_921365.1 119714400 4597582 146475..148619 1 NC_008699.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sma:SAV2450 putative ATP-dependent DNA helicase; DEAD/DEAH box helicase 148619 4597582 Noca_0133 Nocardioides sp. JS614 DEAD/DEAH box helicase YP_921365.1 146475 D 196162 CDS YP_921366.1 119714401 4597583 148881..149261 1 NC_008699.1 hypothetical protein 149261 4597583 Noca_0134 Nocardioides sp. JS614 hypothetical protein YP_921366.1 148881 D 196162 CDS YP_921367.1 119714402 4597584 149285..149956 1 NC_008699.1 hypothetical protein 149956 4597584 Noca_0135 Nocardioides sp. JS614 hypothetical protein YP_921367.1 149285 D 196162 CDS YP_921368.1 119714403 4597585 complement(150060..151574) 1 NC_008699.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro01949 multidrug resistance transporter, MFS superfamily; EmrB/QacA family drug resistance transporter 151574 4597585 Noca_0136 Nocardioides sp. JS614 EmrB/QacA family drug resistance transporter YP_921368.1 150060 R 196162 CDS YP_921369.1 119714404 4597586 complement(151665..152153) 1 NC_008699.1 PFAM: glutathione peroxidase; KEGG: nfa:nfa46650 putative glutathione peroxidase; glutathione peroxidase 152153 4597586 Noca_0137 Nocardioides sp. JS614 glutathione peroxidase YP_921369.1 151665 R 196162 CDS YP_921370.1 119714405 4597587 152214..154925 1 NC_008699.1 PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sco:SCO1167 helicase; SNF2-like protein 154925 4597587 Noca_0138 Nocardioides sp. JS614 SNF2-like protein YP_921370.1 152214 D 196162 CDS YP_921371.1 119714406 4597588 154925..155605 1 NC_008699.1 PFAM: zinc finger, SWIM domain protein; KEGG: sma:SAV368 hypothetical protein; zinc finger SWIM domain-containing protein 155605 4597588 Noca_0139 Nocardioides sp. JS614 zinc finger SWIM domain-containing protein YP_921371.1 154925 D 196162 CDS YP_921372.1 119714407 4597589 complement(155620..156168) 1 NC_008699.1 PFAM: regulatory protein, TetR; KEGG: fra:Francci3_2248 transcriptional regulator, TetR family; TetR family transcriptional regulator 156168 4597589 Noca_0140 Nocardioides sp. JS614 TetR family transcriptional regulator YP_921372.1 155620 R 196162 CDS YP_921373.1 119714408 4597590 complement(156321..156584) 1 NC_008699.1 PFAM: protein of unknown function DUF156; KEGG: cef:CE0057 hypothetical protein; hypothetical protein 156584 4597590 Noca_0141 Nocardioides sp. JS614 hypothetical protein YP_921373.1 156321 R 196162 CDS YP_921374.1 119714409 4597591 complement(156586..156990) 1 NC_008699.1 PFAM: protein of unknown function DUF302; KEGG: nfa:nfa41010 hypothetical protein; hypothetical protein 156990 4597591 Noca_0142 Nocardioides sp. JS614 hypothetical protein YP_921374.1 156586 R 196162 CDS YP_921375.1 119714410 4597592 complement(156987..157367) 1 NC_008699.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: nfa:nfa18780 putative thioredoxin; thioredoxin 157367 4597592 Noca_0143 Nocardioides sp. JS614 thioredoxin YP_921375.1 156987 R 196162 CDS YP_921376.1 119714411 4597593 157493..159649 1 NC_008699.1 PFAM: MMPL domain protein; KEGG: nfa:pnf2660 hypothetical protein; MMPL domain-containing protein 159649 4597593 Noca_0144 Nocardioides sp. JS614 MMPL domain-containing protein YP_921376.1 157493 D 196162 CDS YP_921377.1 119714412 4597594 159674..159841 1 NC_008699.1 KEGG: cgb:cg1481 hypothetical protein; hypothetical protein 159841 4597594 Noca_0145 Nocardioides sp. JS614 hypothetical protein YP_921377.1 159674 D 196162 CDS YP_921378.1 119714413 4597595 160034..161599 1 NC_008699.1 PFAM: Hyalin; KEGG: hch:HCH_03306 protein of unknown function (DUF1555); hyalin 161599 4597595 Noca_0146 Nocardioides sp. JS614 hyalin YP_921378.1 160034 D 196162 CDS YP_921379.1 119714414 4597596 161748..163259 1 NC_008699.1 PFAM: carboxyl transferase; KEGG: sco:SCO2776 acetyl/propionyl CoA carboxylase, beta subunit; propionyl-CoA carboxylase 163259 4597596 Noca_0147 Nocardioides sp. JS614 propionyl-CoA carboxylase YP_921379.1 161748 D 196162 CDS YP_921380.1 119714415 4597597 163348..165252 1 NC_008699.1 PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: rso:RSc0265 probable acyl-CoA carboxylase alpha chain protein; carbamoyl-phosphate synthase subunit L 165252 4597597 Noca_0148 Nocardioides sp. JS614 carbamoyl-phosphate synthase subunit L YP_921380.1 163348 D 196162 CDS YP_921381.1 119714416 4597598 165252..166199 1 NC_008699.1 PFAM: pyruvate carboxyltransferase; KEGG: sma:SAV5276 putative hydroxymethylglutaryl-CoA lyase; hydroxymethylglutaryl-CoA lyase 166199 4597598 Noca_0149 Nocardioides sp. JS614 hydroxymethylglutaryl-CoA lyase YP_921381.1 165252 D 196162 CDS YP_921382.1 119714417 4597599 166369..167466 1 NC_008699.1 KEGG: syd:Syncc9605_2166 hypothetical protein; hypothetical protein 167466 4597599 Noca_0150 Nocardioides sp. JS614 hypothetical protein YP_921382.1 166369 D 196162 CDS YP_921383.1 119714418 4598927 167474..168574 1 NC_008699.1 hypothetical protein 168574 4598927 Noca_0151 Nocardioides sp. JS614 hypothetical protein YP_921383.1 167474 D 196162 CDS YP_921384.1 119714419 4598928 168571..169785 1 NC_008699.1 hypothetical protein 169785 4598928 Noca_0152 Nocardioides sp. JS614 hypothetical protein YP_921384.1 168571 D 196162 CDS YP_921385.1 119714420 4598929 complement(169746..170450) 1 NC_008699.1 KEGG: pac:PPA2088 hypothetical protein; hypothetical protein 170450 4598929 Noca_0153 Nocardioides sp. JS614 hypothetical protein YP_921385.1 169746 R 196162 CDS YP_921386.1 119714421 4598930 170563..171246 1 NC_008699.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 171246 aat 4598930 aat Nocardioides sp. JS614 leucyl/phenylalanyl-tRNA--protein transferase YP_921386.1 170563 D 196162 CDS YP_921387.1 119714422 4598931 171243..171833 1 NC_008699.1 hypothetical protein 171833 4598931 Noca_0155 Nocardioides sp. JS614 hypothetical protein YP_921387.1 171243 D 196162 CDS YP_921388.1 119714423 4598932 complement(171864..172199) 1 NC_008699.1 PFAM: Rhodanese domain protein; KEGG: sco:SCO3839 hypothetical protein; rhodanese domain-containing protein 172199 4598932 Noca_0156 Nocardioides sp. JS614 rhodanese domain-containing protein YP_921388.1 171864 R 196162 CDS YP_921389.1 119714424 4598933 complement(172231..173097) 1 NC_008699.1 PFAM: Formamidopyrimidine-DNA glycolase; KEGG: lxx:Lxx00140 formamidopyrimidine-DNA glycosylase; bifunctional DNA-(apurinic or apyrimidinic site) lyase/formamidopyrimidine-DNA glycosylase 173097 4598933 Noca_0157 Nocardioides sp. JS614 bifunctional DNA-(apurinic or apyrimidinic site) lyase/formamidopyrimidine-DNA glycosylase YP_921389.1 172231 R 196162 CDS YP_921390.1 119714425 4598934 173255..173677 1 NC_008699.1 hypothetical protein 173677 4598934 Noca_0158 Nocardioides sp. JS614 hypothetical protein YP_921390.1 173255 D 196162 CDS YP_921391.1 119714426 4598935 173827..175029 1 NC_008699.1 KEGG: rha:RHA1_ro02400 hypothetical protein; hypothetical protein 175029 4598935 Noca_0159 Nocardioides sp. JS614 hypothetical protein YP_921391.1 173827 D 196162 CDS YP_921392.1 119714427 4598936 175148..175516 1 NC_008699.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mlo:mlr1095 hypothetical protein; methylmalonyl-CoA epimerase 175516 4598936 Noca_0160 Nocardioides sp. JS614 methylmalonyl-CoA epimerase YP_921392.1 175148 D 196162 CDS YP_921393.1 119714428 4598937 175513..176310 1 NC_008699.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sma:SAV4224 putative phosphodiesterase; glycerophosphoryl diester phosphodiesterase 176310 4598937 Noca_0161 Nocardioides sp. JS614 glycerophosphoryl diester phosphodiesterase YP_921393.1 175513 D 196162 CDS YP_921394.1 119714429 4598938 176321..177259 1 NC_008699.1 PFAM: SEC-C motif domain protein; KEGG: sma:SAV4226 hypothetical protein; SecC motif-containing protein 177259 4598938 Noca_0162 Nocardioides sp. JS614 SecC motif-containing protein YP_921394.1 176321 D 196162 CDS YP_921395.1 119714430 4598939 complement(177386..178240) 1 NC_008699.1 KEGG: sma:SAV5728 hypothetical protein; hypothetical protein 178240 4598939 Noca_0163 Nocardioides sp. JS614 hypothetical protein YP_921395.1 177386 R 196162 CDS YP_921396.1 119714431 4598940 complement(178261..179376) 1 NC_008699.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: rha:RHA1_ro05084 probable adenylate cyclase; adenylyl cyclase class-3/4/guanylyl cyclase 179376 4598940 Noca_0164 Nocardioides sp. JS614 adenylyl cyclase class-3/4/guanylyl cyclase YP_921396.1 178261 R 196162 CDS YP_921397.1 119714432 4598941 complement(179430..179804) 1 NC_008699.1 PFAM: cyclic nucleotide-binding; KEGG: mmc:Mmcs_2490 cyclic nucleotide-binding protein; cyclic nucleotide-binding protein 179804 4598941 Noca_0165 Nocardioides sp. JS614 cyclic nucleotide-binding protein YP_921397.1 179430 R 196162 CDS YP_921398.1 119714433 4598942 complement(179899..181122) 1 NC_008699.1 catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase 181122 4598942 Noca_0166 Nocardioides sp. JS614 arginine deiminase YP_921398.1 179899 R 196162 CDS YP_921399.1 119714434 4598943 complement(181155..181745) 1 NC_008699.1 PFAM: protein of unknown function UPF0016; KEGG: fal:FRAAL0931 hypothetical protein; hypothetical protein 181745 4598943 Noca_0167 Nocardioides sp. JS614 hypothetical protein YP_921399.1 181155 R 196162 CDS YP_921400.1 119714435 4598944 complement(181745..182926) 1 NC_008699.1 PFAM: protein of unknown function DUF111; KEGG: cef:CE2361 hypothetical protein; hypothetical protein 182926 4598944 Noca_0168 Nocardioides sp. JS614 hypothetical protein YP_921400.1 181745 R 196162 CDS YP_921401.1 119714436 4598945 complement(182923..183609) 1 NC_008699.1 KEGG: syc:syc0382_d circadian phase modifier CpmA; circadian phase modifier CpmA 183609 4598945 Noca_0169 Nocardioides sp. JS614 circadian phase modifier CpmA YP_921401.1 182923 R 196162 CDS YP_921402.1 119714437 4598946 complement(183811..184674) 1 NC_008699.1 PFAM: prephenate dehydratase; KEGG: rpa:RPA3695 chorismate mutase/prephenate dehydratase; prephenate dehydratase 184674 4598946 Noca_0170 Nocardioides sp. JS614 prephenate dehydratase YP_921402.1 183811 R 196162 CDS YP_921403.1 119714438 4598947 184780..185208 1 NC_008699.1 KEGG: sth:STH3328 hypothetical protein; hypothetical protein 185208 4598947 Noca_0171 Nocardioides sp. JS614 hypothetical protein YP_921403.1 184780 D 196162 CDS YP_921404.1 119714439 4598948 185229..185696 1 NC_008699.1 PFAM: Mycobacterium tuberculosis paralogous family 11; KEGG: rha:RHA1_ro02638 hypothetical protein; hypothetical protein 185696 4598948 Noca_0172 Nocardioides sp. JS614 hypothetical protein YP_921404.1 185229 D 196162 CDS YP_921405.1 119714440 4598949 complement(185796..187316) 1 NC_008699.1 PFAM: phosphoesterase, PA-phosphatase related; diacylglycerol kinase, catalytic region; KEGG: lxx:Lxx21980 hypothetical protein; PA-phosphatase-like phosphoesterase 187316 4598949 Noca_0173 Nocardioides sp. JS614 PA-phosphatase-like phosphoesterase YP_921405.1 185796 R 196162 CDS YP_921406.1 119714441 4598950 187506..188780 1 NC_008699.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 188780 4598950 Noca_0174 Nocardioides sp. JS614 seryl-tRNA synthetase YP_921406.1 187506 D 196162 CDS YP_921407.1 119714442 4598951 188777..189625 1 NC_008699.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; KEGG: pac:PPA2205 hydrolase (HAD superfamily); HAD family hydrolase 189625 4598951 Noca_0175 Nocardioides sp. JS614 HAD family hydrolase YP_921407.1 188777 D 196162 CDS YP_921408.1 119714443 4598952 189625..190122 1 NC_008699.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sco:SCO4311 hypothetical protein; N-acetyltransferase GCN5 190122 4598952 Noca_0176 Nocardioides sp. JS614 N-acetyltransferase GCN5 YP_921408.1 189625 D 196162 CDS YP_921409.1 119714444 4598953 190119..190913 1 NC_008699.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; KEGG: sco:SCO3950 hypothetical protein; HAD family hydrolase 190913 4598953 Noca_0177 Nocardioides sp. JS614 HAD family hydrolase YP_921409.1 190119 D 196162 CDS YP_921410.1 119714445 4598954 190923..191534 1 NC_008699.1 hypothetical protein 191534 4598954 Noca_0178 Nocardioides sp. JS614 hypothetical protein YP_921410.1 190923 D 196162 CDS YP_921411.1 119714446 4598994 complement(191631..192209) 1 NC_008699.1 KEGG: tfu:Tfu_0071 hypothetical protein; hypothetical protein 192209 4598994 Noca_0179 Nocardioides sp. JS614 hypothetical protein YP_921411.1 191631 R 196162 CDS YP_921412.1 119714447 4598995 complement(192241..193218) 1 NC_008699.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sma:SAV4368 quinone oxidoreductase; alcohol dehydrogenase 193218 4598995 Noca_0180 Nocardioides sp. JS614 alcohol dehydrogenase YP_921412.1 192241 R 196162 CDS YP_921413.1 119714448 4598996 complement(193256..193606) 1 NC_008699.1 KEGG: sco:SCO3828 molybdopterin-guanine dinucleotide biosynthesis protein; hypothetical protein 193606 4598996 Noca_0181 Nocardioides sp. JS614 hypothetical protein YP_921413.1 193256 R 196162 CDS YP_921414.1 119714449 4598997 complement(193659..194276) 1 NC_008699.1 KEGG: sma:SAV4365 molybdopterin-guanine dinucleotide biosynthesis protein; molybdopterin-guanine dinucleotide biosynthesis protein 194276 4598997 Noca_0182 Nocardioides sp. JS614 molybdopterin-guanine dinucleotide biosynthesis protein YP_921414.1 193659 R 196162 CDS YP_921415.1 119714450 4598998 194312..195097 1 NC_008699.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: nfa:nfa46820 putative hydrolase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 195097 4598998 Noca_0183 Nocardioides sp. JS614 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_921415.1 194312 D 196162 CDS YP_921416.1 119714451 4598999 195109..196179 1 NC_008699.1 hypothetical protein 196179 4598999 Noca_0184 Nocardioides sp. JS614 hypothetical protein YP_921416.1 195109 D 196162 CDS YP_921417.1 119714452 4599000 196213..196446 1 NC_008699.1 PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: fra:Francci3_3765 biotin/lipoyl attachment; biotin/lipoyl attachment domain-containing protein 196446 4599000 Noca_0185 Nocardioides sp. JS614 biotin/lipoyl attachment domain-containing protein YP_921417.1 196213 D 196162 CDS YP_921418.1 119714453 4599002 complement(196675..197058) 1 NC_008699.1 hypothetical protein 197058 4599002 Noca_0186 Nocardioides sp. JS614 hypothetical protein YP_921418.1 196675 R 196162 CDS YP_921419.1 119714454 4599003 197169..197642 1 NC_008699.1 hypothetical protein 197642 4599003 Noca_0187 Nocardioides sp. JS614 hypothetical protein YP_921419.1 197169 D 196162 CDS YP_921420.1 119714455 4599005 197905..198672 1 NC_008699.1 PFAM: regulatory protein, LuxR; Helix-turn-helix, type 11 domain protein; Sigma-70, region 4 type 2; KEGG: sma:SAV86 erythropoiesis-stimulating protein; regulatory protein LuxR 198672 4599005 Noca_0188 Nocardioides sp. JS614 regulatory protein LuxR YP_921420.1 197905 D 196162 CDS YP_921421.1 119714456 4599006 complement(199226..200248) 1 NC_008699.1 KEGG: sco:SCO2686 LuxR-family transcriptional regulator; LuxR family transcriptional regulator 200248 4599006 Noca_0189 Nocardioides sp. JS614 LuxR family transcriptional regulator YP_921421.1 199226 R 196162 CDS YP_921422.1 119714457 4599007 complement(200387..202231) 1 NC_008699.1 catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP; phosphoenolpyruvate carboxykinase 202231 4599007 Noca_0190 Nocardioides sp. JS614 phosphoenolpyruvate carboxykinase YP_921422.1 200387 R 196162 CDS YP_921423.1 119714458 4599009 complement(202837..204369) 1 NC_008699.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: mbu:Mbur_0510 external sensor signal transduction histidine kinase; ATPase domain-containing protein 204369 4599009 Noca_0191 Nocardioides sp. JS614 ATPase domain-containing protein YP_921423.1 202837 R 196162 CDS YP_921424.1 119714459 4599010 204621..205559 1 NC_008699.1 TIGRFAM: phosphate binding protein; KEGG: tth:TTC1726 phosphate-binding protein; phosphate binding protein 205559 4599010 Noca_0192 Nocardioides sp. JS614 phosphate binding protein YP_921424.1 204621 D 196162 CDS YP_921425.1 119714460 4599011 205714..206400 1 NC_008699.1 KEGG: rxy:Rxyl_3061 hypothetical protein; hypothetical protein 206400 4599011 Noca_0193 Nocardioides sp. JS614 hypothetical protein YP_921425.1 205714 D 196162 CDS YP_921426.1 119714461 4599012 206511..208160 1 NC_008699.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: sth:STH749 two-component sensor kinase, probably involved in phosphate sensing; ATPase domain-containing protein 208160 4599012 Noca_0194 Nocardioides sp. JS614 ATPase domain-containing protein YP_921426.1 206511 D 196162 CDS YP_921427.1 119714462 4599013 208335..208481 1 NC_008699.1 KEGG: mtc:MT1192 hypothetical protein; hypothetical protein 208481 4599013 Noca_0195 Nocardioides sp. JS614 hypothetical protein YP_921427.1 208335 D 196162 CDS YP_921428.1 119714463 4599014 complement(208506..209549) 1 NC_008699.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: dge:Dgeo_2243 transcriptional regulator, LacI family; periplasmic binding protein/LacI transcriptional regulator 209549 4599014 Noca_0196 Nocardioides sp. JS614 periplasmic binding protein/LacI transcriptional regulator YP_921428.1 208506 R 196162 CDS YP_921429.1 119714464 4599015 complement(209959..212736) 1 NC_008699.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: sco:SCO2226 bi-functional protein (secreted alpha-amylase/dextrinase); alpha amylase catalytic subunit 212736 4599015 Noca_0197 Nocardioides sp. JS614 alpha amylase catalytic subunit YP_921429.1 209959 R 196162 CDS YP_921430.1 119714465 4599016 complement(212830..214140) 1 NC_008699.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: sil:SPO1469 3-ketosteroid dehydrogenase, putative; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 214140 4599016 Noca_0198 Nocardioides sp. JS614 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_921430.1 212830 R 196162 CDS YP_921431.1 119714466 4599017 complement(214140..214934) 1 NC_008699.1 KEGG: sil:SPO1461 hypothetical protein; hydantoin racemase-like protein 214934 4599017 Noca_0199 Nocardioides sp. JS614 hydantoin racemase-like protein YP_921431.1 214140 R 196162 CDS YP_921432.1 119714467 4599018 complement(214931..216397) 1 NC_008699.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: bxe:Bxe_B1003 putative succinate dehydrogenase/fumarate reductase, flavoprotein subunit; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 216397 4599018 Noca_0200 Nocardioides sp. JS614 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_921432.1 214931 R 196162 CDS YP_921433.1 119714468 4599019 complement(216394..216990) 1 NC_008699.1 PFAM: isochorismatase hydrolase; KEGG: bur:Bcep18194_C7071 isochorismatase hydrolase; isochorismatase hydrolase 216990 4599019 Noca_0201 Nocardioides sp. JS614 isochorismatase hydrolase YP_921433.1 216394 R 196162 CDS YP_921434.1 119714469 4598955 complement(217019..217738) 1 NC_008699.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: sil:SPO0595 gluconate 5-dehydrogenase; short-chain dehydrogenase/reductase SDR 217738 4598955 Noca_0202 Nocardioides sp. JS614 short-chain dehydrogenase/reductase SDR YP_921434.1 217019 R 196162 CDS YP_921435.1 119714470 4598956 complement(217732..219144) 1 NC_008699.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: bbr:BB3064 hypothetical protein; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 219144 4598956 Noca_0203 Nocardioides sp. JS614 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_921435.1 217732 R 196162 CDS YP_921436.1 119714471 4598957 complement(219141..220118) 1 NC_008699.1 KEGG: bbr:BB0718 carboxyvinyl-carboxyphosphonate phosphorylmutase; 2,3-dimethylmalate lyase 220118 4598957 Noca_0204 Nocardioides sp. JS614 2,3-dimethylmalate lyase YP_921436.1 219141 R 196162 CDS YP_921437.1 119714472 4598958 complement(220244..221431) 1 NC_008699.1 KEGG: rme:Rmet_5998 hypothetical protein; hypothetical protein 221431 4598958 Noca_0205 Nocardioides sp. JS614 hypothetical protein YP_921437.1 220244 R 196162 CDS YP_921438.1 119714473 4598959 221618..222793 1 NC_008699.1 PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: nfa:nfa33590 hypothetical protein; acyl-CoA dehydrogenase type 2 222793 4598959 Noca_0206 Nocardioides sp. JS614 acyl-CoA dehydrogenase type 2 YP_921438.1 221618 D 196162 CDS YP_921439.1 119714474 4598960 222790..223707 1 NC_008699.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mmc:Mmcs_1630 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 223707 4598960 Noca_0207 Nocardioides sp. JS614 glyoxalase/bleomycin resistance protein/dioxygenase YP_921439.1 222790 D 196162 CDS YP_921440.1 119714475 4598961 223704..224579 1 NC_008699.1 PFAM: alpha/beta hydrolase fold; KEGG: ttj:TTHB237 2-hydroxymuconic semialdehyde hydrolase; alpha/beta hydrolase fold protein 224579 4598961 Noca_0208 Nocardioides sp. JS614 alpha/beta hydrolase fold protein YP_921440.1 223704 D 196162 CDS YP_921441.1 119714476 4598962 224615..225790 1 NC_008699.1 PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: bur:Bcep18194_B1413 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase type 2 225790 4598962 Noca_0209 Nocardioides sp. JS614 acyl-CoA dehydrogenase type 2 YP_921441.1 224615 D 196162 CDS YP_921442.1 119714477 4598963 225787..226626 1 NC_008699.1 PFAM: alpha/beta hydrolase fold; KEGG: ttj:TTHB237 2-hydroxymuconic semialdehyde hydrolase; alpha/beta hydrolase fold protein 226626 4598963 Noca_0210 Nocardioides sp. JS614 alpha/beta hydrolase fold protein YP_921442.1 225787 D 196162 CDS YP_921443.1 119714478 4598964 226637..227491 1 NC_008699.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: rha:RHA1_ro04906 hypothetical protein; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase 227491 4598964 Noca_0211 Nocardioides sp. JS614 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase YP_921443.1 226637 D 196162 CDS YP_921444.1 119714479 4598965 complement(227624..227929) 1 NC_008699.1 hypothetical protein 227929 4598965 Noca_0212 Nocardioides sp. JS614 hypothetical protein YP_921444.1 227624 R 196162 CDS YP_921445.1 119714480 4598966 228226..230379 1 NC_008699.1 KEGG: fal:FRAAL4811 putative superfamily I DNA and RNA helicases; superfamily I DNA and RNA helicase 230379 4598966 Noca_0213 Nocardioides sp. JS614 superfamily I DNA and RNA helicase YP_921445.1 228226 D 196162 CDS YP_921446.1 119714481 4598967 complement(230366..230893) 1 NC_008699.1 hypothetical protein 230893 4598967 Noca_0214 Nocardioides sp. JS614 hypothetical protein YP_921446.1 230366 R 196162 CDS YP_921447.1 119714482 4598968 complement(231042..231788) 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc02358 putative high-affinity branched-chain amino acid transport ATP-binding ABC transporter protein; ABC transporter-like protein 231788 4598968 Noca_0215 Nocardioides sp. JS614 ABC transporter-like protein YP_921447.1 231042 R 196162 CDS YP_921448.1 119714483 4598969 complement(231838..233535) 1 NC_008699.1 PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: dra:DRA0261 branched-chain amino acid transport system ATP-binding protein; ABC transporter-like protein 233535 4598969 Noca_0216 Nocardioides sp. JS614 ABC transporter-like protein YP_921448.1 231838 R 196162 CDS YP_921449.1 119714484 4598970 complement(233538..234467) 1 NC_008699.1 PFAM: inner-membrane translocator; KEGG: gka:GK2979 branched-chain amino acid ABC transporter (permease); inner-membrane translocator 234467 4598970 Noca_0217 Nocardioides sp. JS614 inner-membrane translocator YP_921449.1 233538 R 196162 CDS YP_921450.1 119714485 4598971 complement(234534..235880) 1 NC_008699.1 KEGG: nfa:nfa52540 hypothetical protein; ABC-type branched-chain amino acid transport systems periplasmic component-like 235880 4598971 Noca_0218 Nocardioides sp. JS614 ABC-type branched-chain amino acid transport systems periplasmic component-like YP_921450.1 234534 R 196162 CDS YP_921451.1 119714486 4598972 236113..236748 1 NC_008699.1 PFAM: regulatory protein, TetR; KEGG: mpa:MAP1732c hypothetical protein; regulatory protein TetR 236748 4598972 Noca_0219 Nocardioides sp. JS614 regulatory protein TetR YP_921451.1 236113 D 196162 CDS YP_921452.1 119714487 4598973 236745..237353 1 NC_008699.1 PFAM: regulatory protein, TetR; KEGG: mpa:MAP1732c hypothetical protein; regulatory protein TetR 237353 4598973 Noca_0220 Nocardioides sp. JS614 regulatory protein TetR YP_921452.1 236745 D 196162 CDS YP_921453.1 119714488 4598974 237463..238644 1 NC_008699.1 PFAM: flavin reductase domain protein, FMN-binding; KEGG: nar:Saro_1462 flavin reductase-like, FMN-binding; flavin reductase domain-containing protein 238644 4598974 Noca_0221 Nocardioides sp. JS614 flavin reductase domain-containing protein YP_921453.1 237463 D 196162 CDS YP_921454.1 119714489 4598975 238856..239734 1 NC_008699.1 PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: mtc:MT0390 carbon monoxide dehydrogenase, medium subunit, putative; molybdopterin dehydrogenase 239734 4598975 Noca_0222 Nocardioides sp. JS614 molybdopterin dehydrogenase YP_921454.1 238856 D 196162 CDS YP_921455.1 119714490 4598976 239725..240201 1 NC_008699.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rha:RHA1_ro05231 possible carbon monoxide dehydrogenase; 2Fe-2S iron-sulfur cluster binding domain-containing protein 240201 4598976 Noca_0223 Nocardioides sp. JS614 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_921455.1 239725 D 196162 CDS YP_921456.1 119714491 4598977 240198..242573 1 NC_008699.1 TIGRFAM: carbon-monoxide dehydrogenase, large subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: mmc:Mmcs_0491 carbon-monoxide dehydrogenase, large subunit; carbon monoxide dehydrogenase, large subunit 242573 4598977 Noca_0224 Nocardioides sp. JS614 carbon monoxide dehydrogenase, large subunit YP_921456.1 240198 D 196162 CDS YP_921457.1 119714492 4598978 242554..243147 1 NC_008699.1 KEGG: mbo:Mb0378c hypothetical protein; hypothetical protein 243147 4598978 Noca_0225 Nocardioides sp. JS614 hypothetical protein YP_921457.1 242554 D 196162 CDS YP_921458.1 119714493 4598979 243144..244100 1 NC_008699.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: mbo:Mb0384 probable transcriptional regulatory protein (probably LysR-family); substrate-binding protein LysR 244100 4598979 Noca_0226 Nocardioides sp. JS614 substrate-binding protein LysR YP_921458.1 243144 D 196162 CDS YP_921459.1 119714494 4598980 244209..244517 1 NC_008699.1 hypothetical protein 244517 4598980 Noca_0227 Nocardioides sp. JS614 hypothetical protein YP_921459.1 244209 D 196162 CDS YP_921460.1 119714495 4598981 244517..245392 1 NC_008699.1 PFAM: molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: mmc:Mmcs_0489 carbon-monoxide dehydrogenase; molybdopterin dehydrogenase 245392 4598981 Noca_0228 Nocardioides sp. JS614 molybdopterin dehydrogenase YP_921460.1 244517 D 196162 CDS YP_921461.1 119714496 4598982 245389..245934 1 NC_008699.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rxy:Rxyl_0111 (2Fe-2S)-binding protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein 245934 4598982 Noca_0229 Nocardioides sp. JS614 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_921461.1 245389 D 196162 CDS YP_921462.1 119714497 4598983 245931..248345 1 NC_008699.1 KEGG: rha:RHA1_ro05232 possible carbon monoxide dehydrogenase; TIGRFAM: carbon-monoxide dehydrogenase, large subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; xanthine dehydrogenase, molybdenum binding subunit apoprotein 248345 4598983 Noca_0230 Nocardioides sp. JS614 xanthine dehydrogenase, molybdenum binding subunit apoprotein YP_921462.1 245931 D 196162 CDS YP_921463.1 119714498 4598984 248342..249241 1 NC_008699.1 PFAM: protein of unknown function DUF182; YHS domain protein; SMART: TRASH domain protein; KEGG: rha:RHA1_ro05233 hypothetical protein; hypothetical protein 249241 4598984 Noca_0231 Nocardioides sp. JS614 hypothetical protein YP_921463.1 248342 D 196162 CDS YP_921464.1 119714499 4598985 249243..249839 1 NC_008699.1 PFAM: carbon monoxide dehydrogenase subunit G; KEGG: rha:RHA1_ro05235 hypothetical protein; carbon monoxide dehydrogenase subunit G 249839 4598985 Noca_0232 Nocardioides sp. JS614 carbon monoxide dehydrogenase subunit G YP_921464.1 249243 D 196162 CDS YP_921465.1 119714500 4598986 249839..250090 1 NC_008699.1 hypothetical protein 250090 4598986 Noca_0233 Nocardioides sp. JS614 hypothetical protein YP_921465.1 249839 D 196162 CDS YP_921466.1 119714501 4598987 250334..250588 1 NC_008699.1 hypothetical protein 250588 4598987 Noca_0234 Nocardioides sp. JS614 hypothetical protein YP_921466.1 250334 D 196162 CDS YP_921467.1 119714502 4598988 250590..250877 1 NC_008699.1 hypothetical protein 250877 4598988 Noca_0235 Nocardioides sp. JS614 hypothetical protein YP_921467.1 250590 D 196162 CDS YP_921468.1 119714503 4598989 250874..251236 1 NC_008699.1 hypothetical protein 251236 4598989 Noca_0236 Nocardioides sp. JS614 hypothetical protein YP_921468.1 250874 D 196162 CDS YP_921469.1 119714504 4598990 complement(251277..251729) 1 NC_008699.1 hypothetical protein 251729 4598990 Noca_0237 Nocardioides sp. JS614 hypothetical protein YP_921469.1 251277 R 196162 CDS YP_921470.1 119714505 4598991 complement(251737..252864) 1 NC_008699.1 PFAM: VWA containing CoxE family protein; SMART: von Willebrand factor, type A; KEGG: rxy:Rxyl_0115 VWA containing CoxE-like protein; VWA containing CoxE family protein 252864 4598991 Noca_0238 Nocardioides sp. JS614 VWA containing CoxE family protein YP_921470.1 251737 R 196162 CDS YP_921471.1 119714506 4598992 complement(252857..253732) 1 NC_008699.1 PFAM: ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rxy:Rxyl_0114 ATPase associated with various cellular activities, AAA_5; ATPase 253732 4598992 Noca_0239 Nocardioides sp. JS614 ATPase YP_921471.1 252857 R 196162 CDS YP_921472.1 119714507 4598993 complement(253754..253996) 1 NC_008699.1 hypothetical protein 253996 4598993 Noca_0240 Nocardioides sp. JS614 hypothetical protein YP_921472.1 253754 R 196162 CDS YP_921473.1 119714508 4596125 complement(254151..255320) 1 NC_008699.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: tfu:Tfu_0068 putative acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 255320 4596125 Noca_0241 Nocardioides sp. JS614 acyl-CoA dehydrogenase domain-containing protein YP_921473.1 254151 R 196162 CDS YP_921474.1 119714509 4596126 255363..255929 1 NC_008699.1 PFAM: regulatory protein, TetR; KEGG: tfu:Tfu_0069 putative transcriptional regulator; regulatory protein TetR 255929 4596126 Noca_0242 Nocardioides sp. JS614 regulatory protein TetR YP_921474.1 255363 D 196162 CDS YP_921475.1 119714510 4596127 255984..256661 1 NC_008699.1 TIGRFAM: NADPH-dependent F420 reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; KEGG: tfu:Tfu_0970 NADPH-dependent F420 reductase; reduced coenzyme F420:NADP oxidoreductase 256661 4596127 Noca_0243 Nocardioides sp. JS614 reduced coenzyme F420:NADP oxidoreductase YP_921475.1 255984 D 196162 CDS YP_921476.1 119714511 4596128 256882..257550 1 NC_008699.1 hypothetical protein 257550 4596128 Noca_0244 Nocardioides sp. JS614 hypothetical protein YP_921476.1 256882 D 196162 CDS YP_921477.1 119714512 4596129 complement(257634..258317) 1 NC_008699.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: sma:SAV7039 sugar acetyltransferase; hexapaptide repeat-containing transferase 258317 4596129 Noca_0245 Nocardioides sp. JS614 hexapaptide repeat-containing transferase YP_921477.1 257634 R 196162 CDS YP_921478.1 119714513 4596130 258374..258877 1 NC_008699.1 KEGG: sco:SCO0502 hypothetical protein; hypothetical protein 258877 4596130 Noca_0246 Nocardioides sp. JS614 hypothetical protein YP_921478.1 258374 D 196162 CDS YP_921479.1 119714514 4596131 complement(259106..260992) 1 NC_008699.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: sth:STH843 two-component sensor histidine kinase; ATPase domain-containing protein 260992 4596131 Noca_0247 Nocardioides sp. JS614 ATPase domain-containing protein YP_921479.1 259106 R 196162 CDS YP_921480.1 119714515 4596132 complement(260989..261486) 1 NC_008699.1 PFAM: Cupin 2, conserved barrel domain protein; cupin 2 domain-containing protein 261486 4596132 Noca_0248 Nocardioides sp. JS614 cupin 2 domain-containing protein YP_921480.1 260989 R 196162 CDS YP_921481.1 119714516 4596133 261623..262567 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO6360 ABC transporter ATP-binding protein; ABC transporter-like protein 262567 4596133 Noca_0249 Nocardioides sp. JS614 ABC transporter-like protein YP_921481.1 261623 D 196162 CDS YP_921482.1 119714517 4596134 262564..263382 1 NC_008699.1 KEGG: fal:FRAAL2980 putative ABC transporter transmembrane protein; putative ABC transporter transmembrane protein 263382 4596134 Noca_0250 Nocardioides sp. JS614 putative ABC transporter transmembrane protein YP_921482.1 262564 D 196162 CDS YP_921483.1 119714518 4596135 263534..266875 1 NC_008699.1 TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V, RecC subunit; KEGG: mtc:MT0659 exodeoxyribonuclease V, gamma subunit; DNA helicase/exodeoxyribonuclease V subunit gamma 266875 4596135 Noca_0251 Nocardioides sp. JS614 DNA helicase/exodeoxyribonuclease V subunit gamma YP_921483.1 263534 D 196162 CDS YP_921484.1 119714519 4596136 266872..270207 1 NC_008699.1 TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: mmc:Mmcs_0900 exodeoxyribonuclease V, beta subunit; exodeoxyribonuclease V subunit beta 270207 4596136 Noca_0252 Nocardioides sp. JS614 exodeoxyribonuclease V subunit beta YP_921484.1 266872 D 196162 CDS YP_921485.1 119714520 4596137 270200..271954 1 NC_008699.1 KEGG: mpa:MAP4091c exodeoxyribonuclease V alpha chain; TIGRFAM: exodeoxyribonuclease V, alpha subunit; SMART: AAA ATPase; DNA helicase/exodeoxyribonuclease V subunit alpha 271954 4596137 Noca_0253 Nocardioides sp. JS614 DNA helicase/exodeoxyribonuclease V subunit alpha YP_921485.1 270200 D 196162 CDS YP_921486.1 119714521 4596138 272008..272631 1 NC_008699.1 PFAM: amino acid-binding ACT domain protein; KEGG: pac:PPA1121 hypothetical protein; amino acid-binding ACT domain-containing protein 272631 4596138 Noca_0254 Nocardioides sp. JS614 amino acid-binding ACT domain-containing protein YP_921486.1 272008 D 196162 CDS YP_921487.1 119714522 4596139 complement(272737..274059) 1 NC_008699.1 PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV5597 hypothetical protein; major facilitator transporter 274059 4596139 Noca_0255 Nocardioides sp. JS614 major facilitator transporter YP_921487.1 272737 R 196162 CDS YP_921488.1 119714523 4596140 complement(274119..275576) 1 NC_008699.1 hypothetical protein 275576 4596140 Noca_0256 Nocardioides sp. JS614 hypothetical protein YP_921488.1 274119 R 196162 CDS YP_921489.1 119714524 4596141 complement(275612..276055) 1 NC_008699.1 PFAM: Mycobacterium tuberculosis paralogous family 11; KEGG: sma:SAV7465 hypothetical protein; hypothetical protein 276055 4596141 Noca_0257 Nocardioides sp. JS614 hypothetical protein YP_921489.1 275612 R 196162 CDS YP_921490.1 119714525 4596142 276111..277028 1 NC_008699.1 TIGRFAM: naphthoate synthase; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: nfa:nfa51380 putative dihydroxynaphtoic acid synthetase; 1,4-dihydroxy-2-naphthoate synthase 277028 4596142 Noca_0258 Nocardioides sp. JS614 1,4-dihydroxy-2-naphthoate synthase YP_921490.1 276111 D 196162 CDS YP_921491.1 119714526 4596143 277105..278469 1 NC_008699.1 KEGG: cef:CE1017 hypothetical protein; hypothetical protein 278469 4596143 Noca_0259 Nocardioides sp. JS614 hypothetical protein YP_921491.1 277105 D 196162 CDS YP_921492.1 119714527 4596144 278976..280460 1 NC_008699.1 forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha 280460 pntA 4596144 pntA Nocardioides sp. JS614 NAD(P) transhydrogenase subunit alpha YP_921492.1 278976 D 196162 CDS YP_921493.1 119714528 4596145 280460..281875 1 NC_008699.1 PFAM: NAD(P) transhydrogenase, beta subunit; KEGG: mmc:Mmcs_0100 NAD(P) transhydrogenase, beta subunit; NAD(P) transhydrogenase subunit beta 281875 4596145 Noca_0261 Nocardioides sp. JS614 NAD(P) transhydrogenase subunit beta YP_921493.1 280460 D 196162 CDS YP_921494.1 119714529 4596146 complement(281930..282394) 1 NC_008699.1 hypothetical protein 282394 4596146 Noca_0262 Nocardioides sp. JS614 hypothetical protein YP_921494.1 281930 R 196162 CDS YP_921495.1 119714530 4596147 282485..282982 1 NC_008699.1 hypothetical protein 282982 4596147 Noca_0263 Nocardioides sp. JS614 hypothetical protein YP_921495.1 282485 D 196162 CDS YP_921496.1 119714531 4596148 283044..284195 1 NC_008699.1 KEGG: cya:CYA_2465 GTP-binding protein; GTP-binding protein 284195 4596148 Noca_0264 Nocardioides sp. JS614 GTP-binding protein YP_921496.1 283044 D 196162 CDS YP_921497.1 119714532 4596149 284215..284913 1 NC_008699.1 PFAM: Silent information regulator protein Sir2; KEGG: sal:Sala_2748 silent information regulator protein Sir2; silent information regulator protein Sir2 284913 4596149 Noca_0265 Nocardioides sp. JS614 silent information regulator protein Sir2 YP_921497.1 284215 D 196162 CDS YP_921498.1 119714533 4596150 285056..285760 1 NC_008699.1 KEGG: sco:SCO7393 lipoprotein; lipoprotein 285760 4596150 Noca_0266 Nocardioides sp. JS614 lipoprotein YP_921498.1 285056 D 196162 CDS YP_921499.1 119714534 4596151 complement(285767..287506) 1 NC_008699.1 KEGG: nfa:nfa18050 putative glycosyl hydrolase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; malto-oligosyltrehalose trehalohydrolase 287506 4596151 Noca_0267 Nocardioides sp. JS614 malto-oligosyltrehalose trehalohydrolase YP_921499.1 285767 R 196162 CDS YP_921500.1 119714535 4596152 complement(287511..289760) 1 NC_008699.1 KEGG: lxx:Lxx02190 malto-oligosyl trehalose synthase; TIGRFAM: malto-oligosyltrehalose synthase; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; maltooligosyl trehalose synthase 289760 4596152 Noca_0268 Nocardioides sp. JS614 maltooligosyl trehalose synthase YP_921500.1 287511 R 196162 CDS YP_921501.1 119714536 4596153 complement(289765..291966) 1 NC_008699.1 KEGG: mpa:MAP3262c GlgX_2; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; glycogen debranching protein GlgX 291966 4596153 Noca_0269 Nocardioides sp. JS614 glycogen debranching protein GlgX YP_921501.1 289765 R 196162 CDS YP_921502.1 119714537 4596154 292108..293601 1 NC_008699.1 PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro04813 multidrug resistance transporter, MFS superfamily; major facilitator transporter 293601 4596154 Noca_0270 Nocardioides sp. JS614 major facilitator transporter YP_921502.1 292108 D 196162 CDS YP_921503.1 119714538 4596155 293627..294772 1 NC_008699.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rha:RHA1_ro08138 long-chain-acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 294772 4596155 Noca_0271 Nocardioides sp. JS614 acyl-CoA dehydrogenase domain-containing protein YP_921503.1 293627 D 196162 CDS YP_921504.1 119714539 4596156 294848..295579 1 NC_008699.1 PFAM: protein of unknown function DUF125, transmembrane; KEGG: sma:SAV6445 hypothetical protein; hypothetical protein 295579 4596156 Noca_0272 Nocardioides sp. JS614 hypothetical protein YP_921504.1 294848 D 196162 CDS YP_921505.1 119714540 4596157 295784..296350 1 NC_008699.1 TIGRFAM: 2'-5' RNA ligase; PFAM: 2',5' RNA ligase; KEGG: tfu:Tfu_0243 2',5' RNA ligase; 2'-5' RNA ligase 296350 4596157 Noca_0273 Nocardioides sp. JS614 2'-5' RNA ligase YP_921505.1 295784 D 196162 CDS YP_921506.1 119714541 4596158 complement(296357..297100) 1 NC_008699.1 PFAM: RelA/SpoT domain protein; KEGG: lxx:Lxx23800 hypothetical protein; RelA/SpoT domain-containing protein 297100 4596158 Noca_0274 Nocardioides sp. JS614 RelA/SpoT domain-containing protein YP_921506.1 296357 R 196162 CDS YP_921507.1 119714542 4596159 complement(297539..298180) 1 NC_008699.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 298180 upp 4596159 upp Nocardioides sp. JS614 uracil phosphoribosyltransferase YP_921507.1 297539 R 196162 CDS YP_921508.1 119714543 4596160 298300..298785 1 NC_008699.1 KEGG: tfu:Tfu_0025 hypothetical protein; hypothetical protein 298785 4596160 Noca_0276 Nocardioides sp. JS614 hypothetical protein YP_921508.1 298300 D 196162 CDS YP_921509.1 119714544 4596161 298809..299240 1 NC_008699.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: fal:FRAAL0635 tRNA-specific adenosine deaminase; tRNA-adenosine deaminase 299240 4596161 Noca_0277 Nocardioides sp. JS614 tRNA-adenosine deaminase YP_921509.1 298809 D 196162 CDS YP_921510.1 119714545 4595988 299282..299674 1 NC_008699.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: lxx:Lxx15560 lyase; glyoxalase/bleomycin resistance protein/dioxygenase 299674 4595988 Noca_0278 Nocardioides sp. JS614 glyoxalase/bleomycin resistance protein/dioxygenase YP_921510.1 299282 D 196162 CDS YP_921511.1 119714546 4595989 complement(299702..301321) 1 NC_008699.1 PFAM: ferredoxin-dependent glutamate synthase; KEGG: mmc:Mmcs_5268 ferredoxin-dependent glutamate synthase; glutamate synthase (ferredoxin) 301321 4595989 Noca_0279 Nocardioides sp. JS614 glutamate synthase (ferredoxin) YP_921511.1 299702 R 196162 CDS YP_921512.1 119714547 4595990 301391..302623 1 NC_008699.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: nfa:nfa32960 putative L-lactate dehydrogenase; (S)-2-hydroxy-acid oxidase 302623 4595990 Noca_0280 Nocardioides sp. JS614 (S)-2-hydroxy-acid oxidase YP_921512.1 301391 D 196162 CDS YP_921513.1 119714548 4595991 302655..303251 1 NC_008699.1 KEGG: rha:RHA1_ro04896 hypothetical protein; hypothetical protein 303251 4595991 Noca_0281 Nocardioides sp. JS614 hypothetical protein YP_921513.1 302655 D 196162 CDS YP_921514.1 119714549 4595993 303599..304468 1 NC_008699.1 KEGG: sye:Syncc9902_0128 hypothetical protein; hypothetical protein 304468 4595993 Noca_0282 Nocardioides sp. JS614 hypothetical protein YP_921514.1 303599 D 196162 CDS YP_921515.1 119714550 4595994 304562..304891 1 NC_008699.1 KEGG: rha:RHA1_ro00038 hypothetical protein; hypothetical protein 304891 4595994 Noca_0283 Nocardioides sp. JS614 hypothetical protein YP_921515.1 304562 D 196162 CDS YP_921516.1 119714551 4595995 complement(304960..305166) 1 NC_008699.1 KEGG: fra:Francci3_4502 putative signal-transduction protein with CBS domains; signal-transduction protein 305166 4595995 Noca_0284 Nocardioides sp. JS614 signal-transduction protein YP_921516.1 304960 R 196162 CDS YP_921517.1 119714552 4595996 complement(305359..305565) 1 NC_008699.1 KEGG: sco:SCO0174 putative DNA-binding protein; putative DNA-binding protein 305565 4595996 Noca_0285 Nocardioides sp. JS614 putative DNA-binding protein YP_921517.1 305359 R 196162 CDS YP_921518.1 119714553 4595997 305919..306359 1 NC_008699.1 hypothetical protein 306359 4595997 Noca_0286 Nocardioides sp. JS614 hypothetical protein YP_921518.1 305919 D 196162 CDS YP_921519.1 119714554 4595998 306377..306943 1 NC_008699.1 KEGG: mbo:Mb3555c possible siderophore-binding protein; putative siderophore-binding protein 306943 4595998 Noca_0287 Nocardioides sp. JS614 putative siderophore-binding protein YP_921519.1 306377 D 196162 CDS YP_921520.1 119714555 4595999 306940..307707 1 NC_008699.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 307707 4595999 Noca_0288 Nocardioides sp. JS614 enoyl-CoA hydratase YP_921520.1 306940 D 196162 CDS YP_921521.1 119714556 4596000 complement(307692..308072) 1 NC_008699.1 hypothetical protein 308072 4596000 Noca_0289 Nocardioides sp. JS614 hypothetical protein YP_921521.1 307692 R 196162 CDS YP_921522.1 119714557 4596001 complement(308206..308595) 1 NC_008699.1 hypothetical protein 308595 4596001 Noca_0290 Nocardioides sp. JS614 hypothetical protein YP_921522.1 308206 R 196162 CDS YP_921523.1 119714558 4596002 308745..309644 1 NC_008699.1 PFAM: ATPase associated with various cellular activities, AAA_5; KEGG: fal:FRAAL1932 hypothetical protein; ATPase 309644 4596002 Noca_0291 Nocardioides sp. JS614 ATPase YP_921523.1 308745 D 196162 CDS YP_921524.1 119714559 4596003 309655..311022 1 NC_008699.1 PFAM: VWA containing CoxE family protein; KEGG: fal:FRAAL1933 hypothetical protein; VWA containing CoxE family protein 311022 4596003 Noca_0292 Nocardioides sp. JS614 VWA containing CoxE family protein YP_921524.1 309655 D 196162 CDS YP_921525.1 119714560 4596004 complement(311035..312474) 1 NC_008699.1 KEGG: blo:BL1804 hypothetical protein; hypothetical protein 312474 4596004 Noca_0293 Nocardioides sp. JS614 hypothetical protein YP_921525.1 311035 R 196162 CDS YP_921526.1 119714561 4596005 complement(312521..312925) 1 NC_008699.1 hypothetical protein 312925 4596005 Noca_0294 Nocardioides sp. JS614 hypothetical protein YP_921526.1 312521 R 196162 CDS YP_921527.1 119714562 4596006 complement(312991..314172) 1 NC_008699.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 314172 4596006 Noca_0295 Nocardioides sp. JS614 aspartate aminotransferase YP_921527.1 312991 R 196162 CDS YP_921528.1 119714563 4596007 complement(314330..315811) 1 NC_008699.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: mbo:Mb1848 hypothetical protein; hypothetical protein 315811 4596007 Noca_0296 Nocardioides sp. JS614 hypothetical protein YP_921528.1 314330 R 196162 CDS YP_921529.1 119714564 4596008 316135..316833 1 NC_008699.1 PFAM: Redoxin domain protein; KEGG: fal:FRAAL5492 hypothetical protein; putative thiol:disulfide interchange protein; redoxin domain-containing protein 316833 4596008 Noca_0297 Nocardioides sp. JS614 redoxin domain-containing protein YP_921529.1 316135 D 196162 CDS YP_921530.1 119714565 4596009 316905..318422 1 NC_008699.1 the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter 318422 4596009 Noca_0298 Nocardioides sp. JS614 potassium/proton antiporter YP_921530.1 316905 D 196162 CDS YP_921531.1 119714566 4596010 complement(318446..318946) 1 NC_008699.1 KEGG: pac:PPA2178 hypothetical protein; hypothetical protein 318946 4596010 Noca_0299 Nocardioides sp. JS614 hypothetical protein YP_921531.1 318446 R 196162 CDS YP_921532.1 119714567 4596011 complement(318946..319242) 1 NC_008699.1 KEGG: fal:FRAAL0085 hypothetical protein; hypothetical protein 319242 4596011 Noca_0300 Nocardioides sp. JS614 hypothetical protein YP_921532.1 318946 R 196162 CDS YP_921533.1 119714568 4596012 complement(319285..319470) 1 NC_008699.1 hypothetical protein 319470 4596012 Noca_0301 Nocardioides sp. JS614 hypothetical protein YP_921533.1 319285 R 196162 CDS YP_921534.1 119714569 4596013 319580..320071 1 NC_008699.1 KEGG: nfa:nfa48960 hypothetical protein; hypothetical protein 320071 4596013 Noca_0302 Nocardioides sp. JS614 hypothetical protein YP_921534.1 319580 D 196162 CDS YP_921535.1 119714570 4596014 complement(320191..324171) 1 NC_008699.1 PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: sco:SCO5734 ATP/GTP binding protein (membrane protein); cell division protein FtsK 324171 4596014 Noca_0303 Nocardioides sp. JS614 cell division protein FtsK YP_921535.1 320191 R 196162 CDS YP_921536.1 119714571 4596015 324276..325691 1 NC_008699.1 KEGG: ret:RHE_CH02708 hypothetical protein; hypothetical protein 325691 4596015 Noca_0304 Nocardioides sp. JS614 hypothetical protein YP_921536.1 324276 D 196162 CDS YP_921537.1 119714572 4596016 325817..326134 1 NC_008699.1 hypothetical protein 326134 4596016 Noca_0305 Nocardioides sp. JS614 hypothetical protein YP_921537.1 325817 D 196162 CDS YP_921538.1 119714573 4596017 326167..326463 1 NC_008699.1 PFAM: protein of unknown function DUF909; KEGG: cgb:cg0672 hypothetical protein; hypothetical protein 326463 4596017 Noca_0306 Nocardioides sp. JS614 hypothetical protein YP_921538.1 326167 D 196162 CDS YP_921539.1 119714574 4596018 326594..327949 1 NC_008699.1 TIGRFAM: CD9/CD37/CD63 antigen; KEGG: sma:SAV2527 hypothetical protein; hypothetical protein 327949 4596018 Noca_0307 Nocardioides sp. JS614 hypothetical protein YP_921539.1 326594 D 196162 CDS YP_921540.1 119714575 4596019 327960..329408 1 NC_008699.1 KEGG: fal:FRAAL2961 hypothetical protein; hypothetical protein 329408 4596019 Noca_0308 Nocardioides sp. JS614 hypothetical protein YP_921540.1 327960 D 196162 CDS YP_921541.1 119714576 4596020 329399..330673 1 NC_008699.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: mmc:Mmcs_0380 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin 330673 4596020 Noca_0309 Nocardioides sp. JS614 peptidase S8/S53 subtilisin kexin sedolisin YP_921541.1 329399 D 196162 CDS YP_921542.1 119714577 4596021 complement(330706..332175) 1 NC_008699.1 PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: nfa:pnf1230 putative multicopper oxidase; multicopper oxidase, type 3 332175 4596021 Noca_0310 Nocardioides sp. JS614 multicopper oxidase, type 3 YP_921542.1 330706 R 196162 CDS YP_921543.1 119714578 4597946 332756..333457 1 NC_008699.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rha:RHA1_ro11203 response regulator, two-component system; response regulator receiver 333457 4597946 Noca_0312 Nocardioides sp. JS614 response regulator receiver YP_921543.1 332756 D 196162 CDS YP_921544.1 119714579 4597947 333454..334545 1 NC_008699.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rha:RHA1_ro11204 histidine kinase; ATPase domain-containing protein 334545 4597947 Noca_0313 Nocardioides sp. JS614 ATPase domain-containing protein YP_921544.1 333454 D 196162 CDS YP_921545.1 119714580 4597948 334652..337108 1 NC_008699.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: rha:RHA1_ro11210 probable copper-exporting ATPase; heavy metal translocating P-type ATPase 337108 4597948 Noca_0314 Nocardioides sp. JS614 heavy metal translocating P-type ATPase YP_921545.1 334652 D 196162 CDS YP_921546.1 119714581 4597949 337121..337762 1 NC_008699.1 PFAM: protein of unknown function DUF305; KEGG: nfa:nfa38100 hypothetical protein; hypothetical protein 337762 4597949 Noca_0315 Nocardioides sp. JS614 hypothetical protein YP_921546.1 337121 D 196162 CDS YP_921547.1 119714582 4597950 complement(337850..339403) 1 NC_008699.1 PFAM: oxidoreductase, molybdopterin binding; KEGG: mpa:MAP2359c hypothetical protein; oxidoreductase 339403 4597950 Noca_0316 Nocardioides sp. JS614 oxidoreductase YP_921547.1 337850 R 196162 CDS YP_921548.1 119714583 4597953 340151..342187 1 NC_008699.1 KEGG: sco:SCO4067 DNA polymerase III subunit gamma; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; DNA polymerase III subunits gamma and tau 342187 4597953 Noca_0317 Nocardioides sp. JS614 DNA polymerase III subunits gamma and tau YP_921548.1 340151 D 196162 CDS YP_921549.1 119714584 4597954 342243..342617 1 NC_008699.1 PFAM: conserved hypothetical protein 103; KEGG: rha:RHA1_ro04210 hypothetical protein; hypothetical protein 342617 4597954 Noca_0318 Nocardioides sp. JS614 hypothetical protein YP_921549.1 342243 D 196162 CDS YP_921550.1 119714585 4597955 342619..343218 1 NC_008699.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 343218 recR 4597955 recR Nocardioides sp. JS614 recombination protein RecR YP_921550.1 342619 D 196162 CDS YP_921551.1 119714586 4597956 343211..343804 1 NC_008699.1 KEGG: sma:SAV4558 hypothetical protein; hypothetical protein 343804 4597956 Noca_0320 Nocardioides sp. JS614 hypothetical protein YP_921551.1 343211 D 196162 CDS YP_921552.1 119714587 4597957 343857..345131 1 NC_008699.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 345131 4597957 Noca_0321 Nocardioides sp. JS614 aspartate kinase YP_921552.1 343857 D 196162 CDS YP_921553.1 119714588 4597958 345259..346284 1 NC_008699.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 346284 4597958 Noca_0322 Nocardioides sp. JS614 aspartate-semialdehyde dehydrogenase YP_921553.1 345259 D 196162 CDS YP_921554.1 119714589 4597959 complement(346350..347027) 1 NC_008699.1 hypothetical protein 347027 4597959 Noca_0323 Nocardioides sp. JS614 hypothetical protein YP_921554.1 346350 R 196162 CDS YP_921555.1 119714590 4597961 complement(347295..348257) 1 NC_008699.1 PFAM: metallophosphoesterase; KEGG: mmc:Mmcs_4826 metallophosphoesterase; metallophosphoesterase 348257 4597961 Noca_0324 Nocardioides sp. JS614 metallophosphoesterase YP_921555.1 347295 R 196162 CDS YP_921556.1 119714591 4597962 348333..348797 1 NC_008699.1 PFAM: GatB/Yqey domain protein; KEGG: tfu:Tfu_0108 hypothetical protein; GatB/Yqey domain-containing protein 348797 4597962 Noca_0325 Nocardioides sp. JS614 GatB/Yqey domain-containing protein YP_921556.1 348333 D 196162 CDS YP_921557.1 119714592 4597963 complement(348827..351250) 1 NC_008699.1 PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; PASTA domain containing protein; KEGG: tfu:Tfu_0109 PASTA; glycosyl transferase family protein 351250 4597963 Noca_0326 Nocardioides sp. JS614 glycosyl transferase family protein YP_921557.1 348827 R 196162 CDS YP_921558.1 119714593 4597964 351448..351759 1 NC_008699.1 PFAM: transcription factor WhiB; KEGG: sco:SCO3579 regulatory protein; transcription factor WhiB 351759 4597964 Noca_0327 Nocardioides sp. JS614 transcription factor WhiB YP_921558.1 351448 D 196162 CDS YP_921559.1 119714594 4597965 complement(351885..353093) 1 NC_008699.1 PFAM: Anion-transporting ATPase; KEGG: tfu:Tfu_0111 putative ion-transporting ATPase; anion-transporting ATPase 353093 4597965 Noca_0328 Nocardioides sp. JS614 anion-transporting ATPase YP_921559.1 351885 R 196162 CDS YP_921560.1 119714595 4597966 complement(353090..354118) 1 NC_008699.1 PFAM: Anion-transporting ATPase; KEGG: sco:SCO3577 ion-transporting ATPase; anion-transporting ATPase 354118 4597966 Noca_0329 Nocardioides sp. JS614 anion-transporting ATPase YP_921560.1 353090 R 196162 CDS YP_921561.1 119714596 4597967 354203..354976 1 NC_008699.1 KEGG: fal:FRAAL3148 succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (succinyl CoA:3-oxoacid CoA-transferase) (OXCT A); TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 354976 4597967 Noca_0330 Nocardioides sp. JS614 3-oxoacid CoA-transferase subunit A YP_921561.1 354203 D 196162 CDS YP_921562.1 119714597 4597968 354973..355617 1 NC_008699.1 KEGG: fra:Francci3_2503 3-oxoacid CoA-transferase, subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; butyryl-CoA:acetate CoA transferase 355617 4597968 Noca_0331 Nocardioides sp. JS614 butyryl-CoA:acetate CoA transferase YP_921562.1 354973 D 196162 CDS YP_921563.1 119714598 4597969 complement(355713..356549) 1 NC_008699.1 PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: lxx:Lxx06230 RNA polymerase, sigma factor; sigma-70 region 4 domain-containing protein 356549 4597969 Noca_0332 Nocardioides sp. JS614 sigma-70 region 4 domain-containing protein YP_921563.1 355713 R 196162 CDS YP_921564.1 119714599 4597970 356811..357617 1 NC_008699.1 PFAM: sigma-70 region 4 domain protein; KEGG: lxx:Lxx06230 RNA polymerase, sigma factor; sigma-70 region 4 domain-containing protein 357617 4597970 Noca_0333 Nocardioides sp. JS614 sigma-70 region 4 domain-containing protein YP_921564.1 356811 D 196162 CDS YP_921565.1 119714600 4597971 357823..358725 1 NC_008699.1 TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: lxx:Lxx06230 RNA polymerase, sigma factor; FliA/WhiG family RNA polymerase sigma factor 358725 4597971 Noca_0334 Nocardioides sp. JS614 FliA/WhiG family RNA polymerase sigma factor YP_921565.1 357823 D 196162 CDS YP_921566.1 119714601 4597972 358835..358990 1 NC_008699.1 KEGG: fra:Francci3_4281 hypothetical protein; hypothetical protein 358990 4597972 Noca_0335 Nocardioides sp. JS614 hypothetical protein YP_921566.1 358835 D 196162 CDS YP_921567.1 119714602 4597973 358987..359451 1 NC_008699.1 PFAM: Endoribonuclease L-PSP; KEGG: sco:SCO3575 hypothetical protein; endoribonuclease L-PSP 359451 4597973 Noca_0336 Nocardioides sp. JS614 endoribonuclease L-PSP YP_921567.1 358987 D 196162 CDS YP_921568.1 119714603 4597974 359462..360334 1 NC_008699.1 PFAM: NUDIX hydrolase; KEGG: sma:SAV4589 hypothetical protein; NUDIX hydrolase 360334 4597974 Noca_0337 Nocardioides sp. JS614 NUDIX hydrolase YP_921568.1 359462 D 196162 CDS YP_921569.1 119714604 4597975 360390..361157 1 NC_008699.1 PFAM: beta-lactamase domain protein; KEGG: sco:SCO3572 hydrolase; beta-lactamase domain-containing protein 361157 4597975 Noca_0338 Nocardioides sp. JS614 beta-lactamase domain-containing protein YP_921569.1 360390 D 196162 CDS YP_921570.1 119714605 4597976 complement(361275..361952) 1 NC_008699.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: tfu:Tfu_0117 cyclic nucleotide-binding:bacterial regulatory protein, Crp; cyclic nucleotide-binding protein 361952 4597976 Noca_0339 Nocardioides sp. JS614 cyclic nucleotide-binding protein YP_921570.1 361275 R 196162 CDS YP_921571.1 119714606 4597977 362084..362815 1 NC_008699.1 KEGG: sma:SAV4593 putative endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; endonuclease III / DNA-(apurinic or apyrimidinic site) lyase 362815 4597977 Noca_0340 Nocardioides sp. JS614 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase YP_921571.1 362084 D 196162 CDS YP_921572.1 119714607 4597978 362812..363423 1 NC_008699.1 PFAM: Redoxin domain protein; KEGG: pac:PPA0224 hypothetical protein; redoxin domain-containing protein 363423 4597978 Noca_0341 Nocardioides sp. JS614 redoxin domain-containing protein YP_921572.1 362812 D 196162 CDS YP_921573.1 119714608 4597979 363420..364139 1 NC_008699.1 PFAM: NUDIX hydrolase; KEGG: sma:SAV4594 hypothetical protein; NUDIX hydrolase 364139 4597979 Noca_0342 Nocardioides sp. JS614 NUDIX hydrolase YP_921573.1 363420 D 196162 CDS YP_921574.1 119714609 4597980 364136..365311 1 NC_008699.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap; Colicin V production protein; KEGG: fra:Francci3_4292 colicin V production protein; peptidase S1 and S6, chymotrypsin/Hap 365311 4597980 Noca_0343 Nocardioides sp. JS614 peptidase S1 and S6, chymotrypsin/Hap YP_921574.1 364136 D 196162 CDS YP_921575.1 119714610 4597981 complement(365473..365892) 1 NC_008699.1 PFAM: protein of unknown function DUF1469; KEGG: cdi:DIP0309 hypothetical protein; hypothetical protein 365892 4597981 Noca_0344 Nocardioides sp. JS614 hypothetical protein YP_921575.1 365473 R 196162 CDS YP_921576.1 119714611 4597982 complement(365914..367218) 1 NC_008699.1 PFAM: Na+/H+ antiporter NhaA; sodium/hydrogen exchanger; KEGG: fra:Francci3_2583 Na+/H+ antiporter NhaA; Na+/H+ antiporter NhaA 367218 4597982 Noca_0345 Nocardioides sp. JS614 Na+/H+ antiporter NhaA YP_921576.1 365914 R 196162 CDS YP_921577.1 119714612 4597983 complement(367344..369338) 1 NC_008699.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 369338 4597983 Noca_0346 Nocardioides sp. JS614 acetyl-CoA synthetase YP_921577.1 367344 R 196162 CDS YP_921578.1 119714613 4597984 complement(369471..371075) 1 NC_008699.1 TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: sco:SCO1822 putative transmembrane transport protein; SSS family solute/sodium (Na+) symporter 371075 4597984 Noca_0347 Nocardioides sp. JS614 SSS family solute/sodium (Na+) symporter YP_921578.1 369471 R 196162 CDS YP_921579.1 119714614 4597985 complement(371072..371434) 1 NC_008699.1 PFAM: protein of unknown function DUF485; KEGG: sma:SAV6453 hypothetical protein; hypothetical protein 371434 4597985 Noca_0348 Nocardioides sp. JS614 hypothetical protein YP_921579.1 371072 R 196162 CDS YP_921580.1 119714615 4595643 371696..373204 1 NC_008699.1 PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr2806 nitrite extrusion protein; major facilitator transporter 373204 4595643 Noca_0349 Nocardioides sp. JS614 major facilitator transporter YP_921580.1 371696 D 196162 CDS YP_921581.1 119714616 4595644 373204..375246 1 NC_008699.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: fra:Francci3_0863 molybdopterin oxidoreductase; assimilatory nitrate reductase (NADH) subunit alpha apoprotein 375246 4595644 Noca_0350 Nocardioides sp. JS614 assimilatory nitrate reductase (NADH) subunit alpha apoprotein YP_921581.1 373204 D 196162 CDS YP_921582.1 119714617 4595645 375404..376786 1 NC_008699.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: mmc:Mmcs_3231 nitrite reductase (NAD(P)H) large subunit, NirB; assimilatory nitrate reductase (NADH) subunit beta 376786 4595645 Noca_0351 Nocardioides sp. JS614 assimilatory nitrate reductase (NADH) subunit beta YP_921582.1 375404 D 196162 CDS YP_921583.1 119714618 4595646 376783..379299 1 NC_008699.1 TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: fal:FRAAL1355 nitrite reductase, large subunit, nucleotide-binding; assimilatory nitrite reductase (NAD(P)H) large subunit 379299 4595646 Noca_0352 Nocardioides sp. JS614 assimilatory nitrite reductase (NAD(P)H) large subunit YP_921583.1 376783 D 196162 CDS YP_921584.1 119714619 4595647 379296..379673 1 NC_008699.1 TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: fra:Francci3_0795 nitrite reductase (NAD(P)H) large subunit, NirD; assimilatory nitrite reductase (NAD(P)H) small subunit 379673 4595647 Noca_0353 Nocardioides sp. JS614 assimilatory nitrite reductase (NAD(P)H) small subunit YP_921584.1 379296 D 196162 CDS YP_921585.1 119714620 4595648 379670..380788 1 NC_008699.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; bifunctional uroporphyrinogen-III synthetase/response regulator domain-containing protein 380788 4595648 Noca_0354 Nocardioides sp. JS614 bifunctional uroporphyrinogen-III synthetase/response regulator domain-containing protein YP_921585.1 379670 D 196162 CDS YP_921586.1 119714621 4595649 complement(380814..382331) 1 NC_008699.1 PFAM: Na+/solute symporter; KEGG: sma:SAV7117 transmembrane transport protein; Na+/solute symporter 382331 4595649 Noca_0355 Nocardioides sp. JS614 Na+/solute symporter YP_921586.1 380814 R 196162 CDS YP_921587.1 119714622 4595650 complement(382328..382705) 1 NC_008699.1 KEGG: rha:RHA1_ro05042 hypothetical protein; hypothetical protein 382705 4595650 Noca_0356 Nocardioides sp. JS614 hypothetical protein YP_921587.1 382328 R 196162 CDS YP_921588.1 119714623 4595651 complement(382702..383451) 1 NC_008699.1 PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: sma:SAV7115 regulatory protein; response regulator receiver 383451 4595651 Noca_0357 Nocardioides sp. JS614 response regulator receiver YP_921588.1 382702 R 196162 CDS YP_921589.1 119714624 4595652 complement(383448..384572) 1 NC_008699.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase internal region; KEGG: sma:SAV7118 putative two-component system sensor kinase; histidine kinase 384572 4595652 Noca_0358 Nocardioides sp. JS614 histidine kinase YP_921589.1 383448 R 196162 CDS YP_921590.1 119714625 4595653 complement(384577..385362) 1 NC_008699.1 PFAM: carbonic anhydrase; KEGG: mag:amb0581 carbonic anhydrase; carbonate dehydratase 385362 4595653 Noca_0359 Nocardioides sp. JS614 carbonate dehydratase YP_921590.1 384577 R 196162 CDS YP_921591.1 119714626 4595654 complement(385393..386220) 1 NC_008699.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mpa:MAP3459 putative methyltransferase; type 11 methyltransferase 386220 4595654 Noca_0360 Nocardioides sp. JS614 type 11 methyltransferase YP_921591.1 385393 R 196162 CDS YP_921592.1 119714627 4595656 complement(387475..388344) 1 NC_008699.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; KEGG: sco:SCO3558 morphological differentiation-associated protein; HAD family hydrolase 388344 4595656 Noca_0362 Nocardioides sp. JS614 HAD family hydrolase YP_921592.1 387475 R 196162 CDS YP_921593.1 119714628 4595657 388395..389441 1 NC_008699.1 KEGG: sco:SCO3557 septum site determining protein; septum site determining protein 389441 4595657 Noca_0363 Nocardioides sp. JS614 septum site determining protein YP_921593.1 388395 D 196162 CDS YP_921594.1 119714629 4597750 389438..390601 1 NC_008699.1 PFAM: type II secretion system protein E; KEGG: sco:SCO3556 putative secretory protein; type II secretion system protein E 390601 4597750 Noca_0364 Nocardioides sp. JS614 type II secretion system protein E YP_921594.1 389438 D 196162 CDS YP_921595.1 119714630 4597751 390598..391374 1 NC_008699.1 PFAM: type II secretion system protein; KEGG: sco:SCO3555 integral membrane protein; type II secretion system protein 391374 4597751 Noca_0365 Nocardioides sp. JS614 type II secretion system protein YP_921595.1 390598 D 196162 CDS YP_921596.1 119714631 4597752 391371..392093 1 NC_008699.1 PFAM: type II secretion system protein; KEGG: tfu:Tfu_0126 putative integral membrane protein; type II secretion system protein 392093 4597752 Noca_0366 Nocardioides sp. JS614 type II secretion system protein YP_921596.1 391371 D 196162 CDS YP_921597.1 119714632 4597753 392651..393028 1 NC_008699.1 KEGG: sco:SCO3552 hypothetical protein; hypothetical protein 393028 4597753 Noca_0367 Nocardioides sp. JS614 hypothetical protein YP_921597.1 392651 D 196162 CDS YP_921598.1 119714633 4597754 393025..393390 1 NC_008699.1 KEGG: fal:FRAAL6570 hypothetical protein; putative TonB Box domain; hypothetical protein 393390 4597754 Noca_0368 Nocardioides sp. JS614 hypothetical protein YP_921598.1 393025 D 196162 CDS YP_921599.1 119714634 4597755 complement(393420..393731) 1 NC_008699.1 hypothetical protein 393731 4597755 Noca_0369 Nocardioides sp. JS614 hypothetical protein YP_921599.1 393420 R 196162 CDS YP_921600.1 119714635 4597756 complement(393742..396078) 1 NC_008699.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sco:SCO3550 putative helicase; DEAD/DEAH box helicase 396078 4597756 Noca_0370 Nocardioides sp. JS614 DEAD/DEAH box helicase YP_921600.1 393742 R 196162 CDS YP_921601.1 119714636 4597757 396317..396655 1 NC_008699.1 TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: fal:FRAAL6574 anti-sigma-B factor antagonist (anti-anti-sigma-B factor); anti-anti-sigma factor 396655 4597757 Noca_0371 Nocardioides sp. JS614 anti-anti-sigma factor YP_921601.1 396317 D 196162 CDS YP_921602.1 119714637 4597758 396899..399277 1 NC_008699.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase 399277 hppA 4597758 hppA Nocardioides sp. JS614 membrane-bound proton-translocating pyrophosphatase YP_921602.1 396899 D 196162 CDS YP_921603.1 119714638 4597759 complement(399342..400832) 1 NC_008699.1 KEGG: cch:Cag_1235 hypothetical protein; hypothetical protein 400832 4597759 Noca_0373 Nocardioides sp. JS614 hypothetical protein YP_921603.1 399342 R 196162 CDS YP_921604.1 119714639 4597760 401017..402477 1 NC_008699.1 PFAM: methyltransferase small; Methyltransferase type 12; KEGG: sma:SAV4618 rRNA or tRNA methyltransferase; methyltransferase small 402477 4597760 Noca_0374 Nocardioides sp. JS614 methyltransferase small YP_921604.1 401017 D 196162 CDS YP_921605.1 119714640 4597761 complement(402495..403265) 1 NC_008699.1 hypothetical protein 403265 4597761 Noca_0375 Nocardioides sp. JS614 hypothetical protein YP_921605.1 402495 R 196162 CDS YP_921606.1 119714641 4597762 complement(403358..404068) 1 NC_008699.1 hypothetical protein 404068 4597762 Noca_0376 Nocardioides sp. JS614 hypothetical protein YP_921606.1 403358 R 196162 CDS YP_921607.1 119714642 4597763 complement(404073..404597) 1 NC_008699.1 PFAM: regulatory protein, LuxR; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sma:SAV6340 RNA polymerase ECF-subfamily sigma factor; sigma-70 factor 404597 4597763 Noca_0377 Nocardioides sp. JS614 sigma-70 factor YP_921607.1 404073 R 196162 CDS YP_921608.1 119714643 4597764 404767..407484 1 NC_008699.1 KEGG: sma:SAV4621 putative DNA topoisomerase I; TIGRFAM: DNA topoisomerase I; PFAM: TOPRIM domain protein; DNA topoisomerase, type IA, central domain protein; SMART: DNA topoisomerase I, ATP-binding; DNA topoisomerase I, DNA-binding; Toprim sub domain protein; DNA topoisomerase I 407484 4597764 Noca_0378 Nocardioides sp. JS614 DNA topoisomerase I YP_921608.1 404767 D 196162 CDS YP_921609.1 119714644 4597765 407542..408570 1 NC_008699.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sco:SCO6349 transcriptional regulator; LacI family transcriptional regulator 408570 4597765 Noca_0379 Nocardioides sp. JS614 LacI family transcriptional regulator YP_921609.1 407542 D 196162 CDS YP_921610.1 119714645 4597766 408864..410567 1 NC_008699.1 catalyzes the phosphorylation of ribulose to ribulose 5-phosphate; ribulokinase 410567 4597766 Noca_0380 Nocardioides sp. JS614 ribulokinase YP_921610.1 408864 D 196162 CDS YP_921611.1 119714646 4597767 410564..411280 1 NC_008699.1 catalyzes the formation of D-xylulose 5-phosphate from L-ribulose 5-phosphate; L-ribulose-5-phosphate 4-epimerase 411280 4597767 Noca_0381 Nocardioides sp. JS614 L-ribulose-5-phosphate 4-epimerase YP_921611.1 410564 D 196162 CDS YP_921612.1 119714647 4597768 411277..412785 1 NC_008699.1 catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism; L-arabinose isomerase 412785 4597768 Noca_0382 Nocardioides sp. JS614 L-arabinose isomerase YP_921612.1 411277 D 196162 CDS YP_921613.1 119714648 4597769 412854..413939 1 NC_008699.1 KEGG: ret:RHE_CH03165 xylose ABC transporter, substrate-binding protein; xylose ABC transporter, substrate-binding protein 413939 4597769 Noca_0383 Nocardioides sp. JS614 xylose ABC transporter, substrate-binding protein YP_921613.1 412854 D 196162 CDS YP_921614.1 119714649 4597770 414015..415544 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lxx:Lxx00320 multiple sugar (arabinose, xylose, galactose, glucose, fucose) putative porter; ABC transporter-like protein 415544 4597770 Noca_0384 Nocardioides sp. JS614 ABC transporter-like protein YP_921614.1 414015 D 196162 CDS YP_921615.1 119714650 4597771 415548..416837 1 NC_008699.1 PFAM: inner-membrane translocator; KEGG: sco:SCO2406 putative sugar transport permease; inner-membrane translocator 416837 4597771 Noca_0385 Nocardioides sp. JS614 inner-membrane translocator YP_921615.1 415548 D 196162 CDS YP_921616.1 119714651 4597772 417242..417910 1 NC_008699.1 PFAM: thymidylate kinase; KEGG: pac:PPA0243 putative thymidylate kinase; thymidylate kinase 417910 4597772 Noca_0386 Nocardioides sp. JS614 thymidylate kinase YP_921616.1 417242 D 196162 CDS YP_921617.1 119714652 4597773 417907..419064 1 NC_008699.1 TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: pac:PPA0244 DNA polymerase III delta' subunit; DNA polymerase III subunit delta' 419064 4597773 Noca_0387 Nocardioides sp. JS614 DNA polymerase III subunit delta' YP_921617.1 417907 D 196162 CDS YP_921618.1 119714653 4597774 419061..420626 1 NC_008699.1 PFAM: alpha/beta hydrolase fold; TAP domain protein; KEGG: sco:SCO3540 proteinase (secreted protein); TAP domain-containing protein 420626 4597774 Noca_0388 Nocardioides sp. JS614 TAP domain-containing protein YP_921618.1 419061 D 196162 CDS YP_921619.1 119714654 4597775 complement(420751..422100) 1 NC_008699.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: nfa:nfa30780 putative oxidoreductase; amine oxidase 422100 4597775 Noca_0389 Nocardioides sp. JS614 amine oxidase YP_921619.1 420751 R 196162 CDS YP_921620.1 119714655 4597776 complement(422097..423287) 1 NC_008699.1 PFAM: peptidase U34, dipeptidase; KEGG: pae:PA4677 hypothetical protein; peptidase U34, dipeptidase 423287 4597776 Noca_0390 Nocardioides sp. JS614 peptidase U34, dipeptidase YP_921620.1 422097 R 196162 CDS YP_921621.1 119714656 4597777 complement(423351..423755) 1 NC_008699.1 PFAM: Limonene-1,2-epoxide hydrolase; KEGG: nfa:nfa48080 hypothetical protein; limonene-1,2-epoxide hydrolase 423755 4597777 Noca_0391 Nocardioides sp. JS614 limonene-1,2-epoxide hydrolase YP_921621.1 423351 R 196162 CDS YP_921622.1 119714657 4597778 complement(423752..424702) 1 NC_008699.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: csa:Csal_1417 transcriptional regulator, LysR family; LysR family transcriptional regulator 424702 4597778 Noca_0392 Nocardioides sp. JS614 LysR family transcriptional regulator YP_921622.1 423752 R 196162 CDS YP_921623.1 119714658 4597779 424809..424991 1 NC_008699.1 hypothetical protein 424991 4597779 Noca_0393 Nocardioides sp. JS614 hypothetical protein YP_921623.1 424809 D 196162 CDS YP_921624.1 119714659 4597781 425549..426130 1 NC_008699.1 hypothetical protein 426130 4597781 Noca_0394 Nocardioides sp. JS614 hypothetical protein YP_921624.1 425549 D 196162 CDS YP_921625.1 119714660 4597782 426148..426810 1 NC_008699.1 hypothetical protein 426810 4597782 Noca_0395 Nocardioides sp. JS614 hypothetical protein YP_921625.1 426148 D 196162 CDS YP_921626.1 119714661 4597783 427097..427459 1 NC_008699.1 PFAM: DGPFAETKE family protein; KEGG: sma:SAV1196 hypothetical protein; DGPFAETKE family protein 427459 4597783 Noca_0396 Nocardioides sp. JS614 DGPFAETKE family protein YP_921626.1 427097 D 196162 CDS YP_921627.1 119714662 4597784 427653..428579 1 NC_008699.1 KEGG: rha:RHA1_ro05190 hypothetical protein; hypothetical protein 428579 4597784 Noca_0397 Nocardioides sp. JS614 hypothetical protein YP_921627.1 427653 D 196162 CDS YP_921628.1 119714663 4597785 complement(428636..429280) 1 NC_008699.1 PFAM: class II aldolase/adducin family protein; KEGG: cpf:CPF_1051 L-fuculose phosphate aldolase; class II aldolase/adducin family protein 429280 4597785 Noca_0398 Nocardioides sp. JS614 class II aldolase/adducin family protein YP_921628.1 428636 R 196162 CDS YP_921629.1 119714664 4597786 complement(429287..430168) 1 NC_008699.1 PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: cch:Cag_1641 hypothetical protein; aldolase 430168 4597786 Noca_0399 Nocardioides sp. JS614 aldolase YP_921629.1 429287 R 196162 CDS YP_921630.1 119714665 4597787 complement(430197..430586) 1 NC_008699.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: btk:BT9727_2719 conserved hypothetical protein, possible polyketide synthesis domain protein; cupin 430586 4597787 Noca_0400 Nocardioides sp. JS614 cupin YP_921630.1 430197 R 196162 CDS YP_921631.1 119714666 4597713 complement(430624..432582) 1 NC_008699.1 PFAM: class II aldolase/adducin family protein; short-chain dehydrogenase/reductase SDR; KEGG: syn:slr1208 short-chain alcohol dehydrogenase family; short chain dehydrogenase 432582 4597713 Noca_0401 Nocardioides sp. JS614 short chain dehydrogenase YP_921631.1 430624 R 196162 CDS YP_921632.1 119714667 4597714 complement(432727..433446) 1 NC_008699.1 PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: tte:TTE0461 Transcriptional regulator; GntR family transcriptional regulator 433446 4597714 Noca_0402 Nocardioides sp. JS614 GntR family transcriptional regulator YP_921632.1 432727 R 196162 CDS YP_921633.1 119714668 4597715 433600..434634 1 NC_008699.1 KEGG: fal:FRAAL1411 methylthioribose-1-phosphate isomerase (MTR-1-P isomerase); TIGRFAM: eIF-2B alpha/beta/delta-related uncharacterized proteins; PFAM: initiation factor 2B related; translation initiation factor 2B subunit I 434634 4597715 Noca_0403 Nocardioides sp. JS614 translation initiation factor 2B subunit I YP_921633.1 433600 D 196162 CDS YP_921634.1 119714669 4597716 434682..435788 1 NC_008699.1 KEGG: ret:RHE_PB00122 probable sugar ABC transporter, substrate-binding protein; putative sugar ABC transporter, substrate-binding protein 435788 4597716 Noca_0404 Nocardioides sp. JS614 putative sugar ABC transporter, substrate-binding protein YP_921634.1 434682 D 196162 CDS YP_921635.1 119714670 4597717 435846..437378 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: psp:PSPPH_2279 ABC transporter protein, ATP binding component; ABC transporter-like protein 437378 4597717 Noca_0405 Nocardioides sp. JS614 ABC transporter-like protein YP_921635.1 435846 D 196162 CDS YP_921636.1 119714671 4597718 437378..438463 1 NC_008699.1 PFAM: inner-membrane translocator; KEGG: mlo:mlr7287 ABC transporter, permease protein; inner-membrane translocator 438463 4597718 Noca_0406 Nocardioides sp. JS614 inner-membrane translocator YP_921636.1 437378 D 196162 CDS YP_921637.1 119714672 4597719 438509..439738 1 NC_008699.1 phosphorylates methylthioribose to form methylthioribose-1-phosphate; involved in methionine salvage pathway; methylthioribose kinase 439738 mtnK 4597719 mtnK Nocardioides sp. JS614 methylthioribose kinase YP_921637.1 438509 D 196162 CDS YP_921638.1 119714673 4597720 complement(439817..442225) 1 NC_008699.1 PFAM: Thrombospondin type 3 repeat; KEGG: ade:Adeh_3645 outer membrane protein, OmpA/MotB family; thrombospondin type 3 repeat-containing protein 442225 4597720 Noca_0408 Nocardioides sp. JS614 thrombospondin type 3 repeat-containing protein YP_921638.1 439817 R 196162 CDS YP_921639.1 119714674 4597721 complement(442294..443040) 1 NC_008699.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: rxy:Rxyl_0706 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 443040 4597721 Noca_0409 Nocardioides sp. JS614 short-chain dehydrogenase/reductase SDR YP_921639.1 442294 R 196162 CDS YP_921640.1 119714675 4597722 complement(443037..443549) 1 NC_008699.1 KEGG: xom:XOO_4078 hypothetical protein; hypothetical protein 443549 4597722 Noca_0410 Nocardioides sp. JS614 hypothetical protein YP_921640.1 443037 R 196162 CDS YP_921641.1 119714676 4597723 complement(443569..444246) 1 NC_008699.1 PFAM: Vitamin K epoxide reductase; KEGG: blo:BL0088 narrowly conserved hypothetical transmembrane protein; vitamin K epoxide reductase 444246 4597723 Noca_0411 Nocardioides sp. JS614 vitamin K epoxide reductase YP_921641.1 443569 R 196162 CDS YP_921642.1 119714677 4597724 complement(444243..445073) 1 NC_008699.1 PFAM: DSBA oxidoreductase; KEGG: nfa:nfa52230 hypothetical protein; DSBA oxidoreductase 445073 4597724 Noca_0412 Nocardioides sp. JS614 DSBA oxidoreductase YP_921642.1 444243 R 196162 CDS YP_921643.1 119714678 4597725 complement(445255..445623) 1 NC_008699.1 hypothetical protein 445623 4597725 Noca_0413 Nocardioides sp. JS614 hypothetical protein YP_921643.1 445255 R 196162 CDS YP_921644.1 119714679 4597726 445679..447970 1 NC_008699.1 PFAM: peptidase S15; X-Pro dipeptidyl-peptidase C-terminal domain protein; KEGG: nfa:nfa43000 putative esterase; peptidase S15 447970 4597726 Noca_0414 Nocardioides sp. JS614 peptidase S15 YP_921644.1 445679 D 196162 CDS YP_921645.1 119714680 4597727 448056..448667 1 NC_008699.1 PFAM: protein of unknown function DUF161; KEGG: eca:ECA3669 hypothetical protein; hypothetical protein 448667 4597727 Noca_0415 Nocardioides sp. JS614 hypothetical protein YP_921645.1 448056 D 196162 CDS YP_921646.1 119714681 4597729 complement(449692..450126) 1 NC_008699.1 KEGG: sma:SAV6755 hypothetical protein; hypothetical protein 450126 4597729 Noca_0417 Nocardioides sp. JS614 hypothetical protein YP_921646.1 449692 R 196162 CDS YP_921647.1 119714682 4597730 450212..450643 1 NC_008699.1 PFAM: ribonuclease H; KEGG: eli:ELI_01550 ribonuclease H; ribonuclease H 450643 4597730 Noca_0418 Nocardioides sp. JS614 ribonuclease H YP_921647.1 450212 D 196162 CDS YP_921648.1 119714683 4597731 450723..451823 1 NC_008699.1 PFAM: Endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 451823 4597731 Noca_0419 Nocardioides sp. JS614 endonuclease/exonuclease/phosphatase YP_921648.1 450723 D 196162 CDS YP_921649.1 119714684 4597732 complement(451816..452163) 1 NC_008699.1 PFAM: helix-turn-helix, HxlR type; KEGG: sma:SAV4875 transcriptional regulator; HxlR type helix-turn-helix domain-containing protein 452163 4597732 Noca_0420 Nocardioides sp. JS614 HxlR type helix-turn-helix domain-containing protein YP_921649.1 451816 R 196162 CDS YP_921650.1 119714685 4597733 452287..453144 1 NC_008699.1 PFAM: NmrA family protein; KEGG: lxx:Lxx16700 hypothetical protein; NmrA family protein 453144 4597733 Noca_0421 Nocardioides sp. JS614 NmrA family protein YP_921650.1 452287 D 196162 CDS YP_921651.1 119714686 4597734 complement(453119..454018) 1 NC_008699.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: fra:Francci3_0236 modification methylase, HemK family; HemK family modification methylase 454018 4597734 Noca_0422 Nocardioides sp. JS614 HemK family modification methylase YP_921651.1 453119 R 196162 CDS YP_921652.1 119714687 4597735 454035..454358 1 NC_008699.1 KEGG: fal:FRAAL1608 hypothetical protein; putative membrane protein; hypothetical protein 454358 4597735 Noca_0423 Nocardioides sp. JS614 hypothetical protein YP_921652.1 454035 D 196162 CDS YP_921653.1 119714688 4597736 454355..454762 1 NC_008699.1 KEGG: tfu:Tfu_0355 putative integral membrane protein; putative integral membrane protein 454762 4597736 Noca_0424 Nocardioides sp. JS614 putative integral membrane protein YP_921653.1 454355 D 196162 CDS YP_921654.1 119714689 4597737 454784..455962 1 NC_008699.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: rha:RHA1_ro03045 probable NADH-dependent flavin oxidoreductase; NADH:flavin oxidoreductase 455962 4597737 Noca_0425 Nocardioides sp. JS614 NADH:flavin oxidoreductase YP_921654.1 454784 D 196162 CDS YP_921655.1 119714690 4597738 456145..457266 1 NC_008699.1 PFAM: dihydrodipicolinate reductase; KEGG: rha:RHA1_ro02530 hypothetical protein; dihydrodipicolinate reductase 457266 4597738 Noca_0426 Nocardioides sp. JS614 dihydrodipicolinate reductase YP_921655.1 456145 D 196162 CDS YP_921656.1 119714691 4597739 457322..458134 1 NC_008699.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: mmc:Mmcs_4362 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase 458134 4597739 Noca_0427 Nocardioides sp. JS614 short chain dehydrogenase YP_921656.1 457322 D 196162 CDS YP_921657.1 119714692 4597740 458144..459244 1 NC_008699.1 PFAM: beta-lactamase domain protein; KEGG: rha:RHA1_ro04761 hypothetical protein; beta-lactamase domain-containing protein 459244 4597740 Noca_0428 Nocardioides sp. JS614 beta-lactamase domain-containing protein YP_921657.1 458144 D 196162 CDS YP_921658.1 119714693 4597741 complement(459234..459677) 1 NC_008699.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rha:RHA1_ro06613 hypothetical protein; N-acetyltransferase GCN5 459677 4597741 Noca_0429 Nocardioides sp. JS614 N-acetyltransferase GCN5 YP_921658.1 459234 R 196162 CDS YP_921659.1 119714694 4597742 complement(459674..460591) 1 NC_008699.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: eli:ELI_09720 esterase; alpha/beta hydrolase domain-containing protein 460591 4597742 Noca_0430 Nocardioides sp. JS614 alpha/beta hydrolase domain-containing protein YP_921659.1 459674 R 196162 CDS YP_921660.1 119714695 4597743 460688..461275 1 NC_008699.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: sma:SAV1635 hypothetical protein; alkylhydroperoxidase 461275 4597743 Noca_0431 Nocardioides sp. JS614 alkylhydroperoxidase YP_921660.1 460688 D 196162 CDS YP_921661.1 119714696 4597744 461272..462150 1 NC_008699.1 PFAM: DNA gyrase C-terminal repeat, beta-propeller; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sco:SCO2742 putative sigma factor; sigma-70 region 2 domain-containing protein 462150 4597744 Noca_0432 Nocardioides sp. JS614 sigma-70 region 2 domain-containing protein YP_921661.1 461272 D 196162 CDS YP_921662.1 119714697 4597745 462413..463492 1 NC_008699.1 TIGRFAM: ABC transporter, periplasmic binding protein, thiB subfamily; PFAM: extracellular solute-binding protein, family 1; KEGG: sco:SCO5646 putative solute binding lipoprotein; ABC transporter periplasmic-binding protein 463492 4597745 Noca_0433 Nocardioides sp. JS614 ABC transporter periplasmic-binding protein YP_921662.1 462413 D 196162 CDS YP_921663.1 119714698 4597746 463526..465160 1 NC_008699.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO5647 ABC transporter integral membrane protein; binding-protein-dependent transport systems inner membrane component 465160 4597746 Noca_0434 Nocardioides sp. JS614 binding-protein-dependent transport systems inner membrane component YP_921663.1 463526 D 196162 CDS YP_921664.1 119714699 4597747 465160..466158 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO5648 ABC transporter ATP binding protein; ABC transporter-like protein 466158 4597747 Noca_0435 Nocardioides sp. JS614 ABC transporter-like protein YP_921664.1 465160 D 196162 CDS YP_921665.1 119714700 4597748 466180..467241 1 NC_008699.1 KEGG: pca:Pcar_1759 hypothetical protein; hypothetical protein 467241 4597748 Noca_0436 Nocardioides sp. JS614 hypothetical protein YP_921665.1 466180 D 196162 CDS YP_921666.1 119714701 4597749 467338..469311 1 NC_008699.1 PFAM: acyl-CoA oxidase domain protein; acyl-CoA dehydrogenase domain protein; KEGG: tfu:Tfu_2239 hypothetical protein; acyl-CoA oxidase domain-containing protein 469311 4597749 Noca_0437 Nocardioides sp. JS614 acyl-CoA oxidase domain-containing protein YP_921666.1 467338 D 196162 CDS YP_921667.1 119714702 4597337 complement(469421..469912) 1 NC_008699.1 PFAM: Inorganic pyrophosphatase; KEGG: sma:SAV4661 putative inorganic pyrophosphatase; inorganic diphosphatase 469912 4597337 Noca_0438 Nocardioides sp. JS614 inorganic diphosphatase YP_921667.1 469421 R 196162 CDS YP_921668.1 119714703 4597338 470027..471409 1 NC_008699.1 TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13, D-Ala-D-Ala carboxypeptidase C; KEGG: sma:SAV4662 D-alanyl-D-alanine carboxypeptidase; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 471409 4597338 Noca_0439 Nocardioides sp. JS614 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase YP_921668.1 470027 D 196162 CDS YP_921669.1 119714704 4597339 471452..472498 1 NC_008699.1 KEGG: sma:SAV4663 hypothetical protein; hypothetical protein 472498 4597339 Noca_0440 Nocardioides sp. JS614 hypothetical protein YP_921669.1 471452 D 196162 CDS YP_921670.1 119714705 4597340 472519..473484 1 NC_008699.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: tfu:Tfu_2897 helix-turn-helix, fis-type; tRNA(Ile)-lysidine synthetase 473484 4597340 Noca_0441 Nocardioides sp. JS614 tRNA(Ile)-lysidine synthetase YP_921670.1 472519 D 196162 CDS YP_921671.1 119714706 4597341 473580..474293 1 NC_008699.1 hypothetical protein 474293 4597341 Noca_0442 Nocardioides sp. JS614 hypothetical protein YP_921671.1 473580 D 196162 CDS YP_921672.1 119714707 4597342 474309..474860 1 NC_008699.1 KEGG: sco:SCO3405 putative hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase 474860 4597342 Noca_0443 Nocardioides sp. JS614 hypoxanthine phosphoribosyltransferase YP_921672.1 474309 D 196162 CDS YP_921673.1 119714708 4597343 475120..477165 1 NC_008699.1 KEGG: sma:SAV4666 putative cell division protein FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; Mername-AA223 peptidase 477165 4597343 Noca_0444 Nocardioides sp. JS614 Mername-AA223 peptidase YP_921673.1 475120 D 196162 CDS YP_921674.1 119714709 4597344 477305..477922 1 NC_008699.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 477922 folE 4597344 folE Nocardioides sp. JS614 GTP cyclohydrolase I YP_921674.1 477305 D 196162 CDS YP_921675.1 119714710 4597345 477930..478790 1 NC_008699.1 KEGG: sma:SAV4672 putative dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS; dihydropteroate synthase 478790 4597345 Noca_0446 Nocardioides sp. JS614 dihydropteroate synthase YP_921675.1 477930 D 196162 CDS YP_921676.1 119714711 4597346 478787..479173 1 NC_008699.1 TIGRFAM: dihydroneopterin aldolase; KEGG: tfu:Tfu_2891 dihydroneopterin aldolase family:dihydroneopterin aldolase; dihydroneopterin aldolase 479173 4597346 Noca_0447 Nocardioides sp. JS614 dihydroneopterin aldolase YP_921676.1 478787 D 196162 CDS YP_921677.1 119714712 4597347 479166..479735 1 NC_008699.1 KEGG: sco:SCO3401 putative hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 479735 4597347 Noca_0448 Nocardioides sp. JS614 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_921677.1 479166 D 196162 CDS YP_921678.1 119714713 4597348 479743..480234 1 NC_008699.1 KEGG: sco:SCO3402 secreted protein; hypothetical protein 480234 4597348 Noca_0449 Nocardioides sp. JS614 hypothetical protein YP_921678.1 479743 D 196162 CDS YP_921679.1 119714714 4597349 480244..480849 1 NC_008699.1 KEGG: sco:SCP2.27c putative multidomain membrane protein; hypothetical protein 480849 4597349 Noca_0450 Nocardioides sp. JS614 hypothetical protein YP_921679.1 480244 D 196162 CDS YP_921680.1 119714715 4597350 480965..482113 1 NC_008699.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 482113 4597350 Noca_0451 Nocardioides sp. JS614 N-acetyltransferase GCN5 YP_921680.1 480965 D 196162 CDS YP_921681.1 119714716 4597351 complement(482221..483255) 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV7409 putative ABC transporter ATP-binding protein; ABC transporter-like protein 483255 4597351 Noca_0452 Nocardioides sp. JS614 ABC transporter-like protein YP_921681.1 482221 R 196162 CDS YP_921682.1 119714717 4597352 483259..483966 1 NC_008699.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV7406 putative ABC transporter permease protein; binding-protein-dependent transport system inner membrane protein 483966 4597352 Noca_0453 Nocardioides sp. JS614 binding-protein-dependent transport system inner membrane protein YP_921682.1 483259 D 196162 CDS YP_921683.1 119714718 4597353 483963..484736 1 NC_008699.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fal:FRAAL6728 putative ABC transporter permease protein; binding-protein-dependent transport system inner membrane protein 484736 4597353 Noca_0454 Nocardioides sp. JS614 binding-protein-dependent transport system inner membrane protein YP_921683.1 483963 D 196162 CDS YP_921684.1 119714719 4597354 484783..485739 1 NC_008699.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: fal:FRAAL6729 putative amino acid ABC transporter amino acid-binding protein; glycine betaine ABC transporter substrate-binding protein 485739 4597354 Noca_0455 Nocardioides sp. JS614 glycine betaine ABC transporter substrate-binding protein YP_921684.1 484783 D 196162 CDS YP_921685.1 119714720 4597355 complement(485732..486844) 1 NC_008699.1 PFAM: glycosyl transferase, family 2; KEGG: sco:SCO2590 glycosyltransferase; glycosyl transferase family protein 486844 4597355 Noca_0456 Nocardioides sp. JS614 glycosyl transferase family protein YP_921685.1 485732 R 196162 CDS YP_921686.1 119714721 4597356 486894..487982 1 NC_008699.1 KEGG: rxy:Rxyl_3097 hypothetical protein; hypothetical protein 487982 4597356 Noca_0457 Nocardioides sp. JS614 hypothetical protein YP_921686.1 486894 D 196162 CDS YP_921687.1 119714722 4597357 487979..488893 1 NC_008699.1 KEGG: rxy:Rxyl_3098 hypothetical protein; hypothetical protein 488893 4597357 Noca_0458 Nocardioides sp. JS614 hypothetical protein YP_921687.1 487979 D 196162 CDS YP_921688.1 119714723 4597358 489233..490051 1 NC_008699.1 KEGG: sco:SCO3384 hypothetical protein; hypothetical protein 490051 4597358 Noca_0459 Nocardioides sp. JS614 hypothetical protein YP_921688.1 489233 D 196162 CDS YP_921689.1 119714724 4597359 490048..491052 1 NC_008699.1 KEGG: nfa:nfa4060 putative pantothenate synthetase; TIGRFAM: pantoate--beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase; pantothenate synthetase 491052 4597359 Noca_0460 Nocardioides sp. JS614 pantothenate synthetase YP_921689.1 490048 D 196162 CDS YP_921690.1 119714725 4597360 491064..491471 1 NC_008699.1 KEGG: nfa:nfa4070 putative aspartate 1-decarboxylase; TIGRFAM: aspartate 1-decarboxylase; PFAM: aspartate decarboxylase; L-aspartate 1-decarboxylase 491471 4597360 Noca_0461 Nocardioides sp. JS614 L-aspartate 1-decarboxylase YP_921690.1 491064 D 196162 CDS YP_921691.1 119714726 4597361 491481..493208 1 NC_008699.1 catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 493208 4597361 Noca_0462 Nocardioides sp. JS614 L-aspartate oxidase YP_921691.1 491481 D 196162 CDS YP_921692.1 119714727 4597362 493205..494107 1 NC_008699.1 KEGG: fra:Francci3_4378 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase 494107 4597362 Noca_0463 Nocardioides sp. JS614 nicotinate-nucleotide pyrophosphorylase YP_921692.1 493205 D 196162 CDS YP_921693.1 119714728 4597363 494111..494884 1 NC_008699.1 TIGRFAM: putative transcriptional activator, Baf family; PFAM: Bordetella pertussis Bvg accessory factor; KEGG: sma:SAV4690 putative Bordetella pertussis Bvg accessory factor family; pantothenate kinase 494884 4597363 Noca_0464 Nocardioides sp. JS614 pantothenate kinase YP_921693.1 494111 D 196162 CDS YP_921694.1 119714729 4597364 495060..495386 1 NC_008699.1 KEGG: pac:PPA0277 hypothetical protein; hypothetical protein 495386 4597364 Noca_0465 Nocardioides sp. JS614 hypothetical protein YP_921694.1 495060 D 196162 CDS YP_921695.1 119714730 4597365 495691..498276 1 NC_008699.1 PFAM: UvrB/UvrC protein; AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: sma:SAV4697 putative ATP-dependent Clp protease; ATPase 498276 4597365 Noca_0466 Nocardioides sp. JS614 ATPase YP_921695.1 495691 D 196162 CDS YP_921696.1 119714731 4597366 complement(498338..499204) 1 NC_008699.1 PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: sco:SCO3355 putative adenine glycosylase; HhH-GPD family protein 499204 4597366 Noca_0467 Nocardioides sp. JS614 HhH-GPD family protein YP_921696.1 498338 R 196162 CDS YP_921697.1 119714732 4597367 499269..500069 1 NC_008699.1 KEGG: tfu:Tfu_2874 hypothetical protein; hypothetical protein 500069 4597367 Noca_0468 Nocardioides sp. JS614 hypothetical protein YP_921697.1 499269 D 196162 CDS YP_921698.1 119714733 4597368 complement(500207..501289) 1 NC_008699.1 non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair; DNA integrity scanning protein DisA 501289 4597368 Noca_0469 Nocardioides sp. JS614 DNA integrity scanning protein DisA YP_921698.1 500207 R 196162 CDS YP_921699.1 119714734 4597369 complement(501369..502787) 1 NC_008699.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 502787 4597369 Noca_0470 Nocardioides sp. JS614 DNA repair protein RadA YP_921699.1 501369 R 196162 CDS YP_921700.1 119714735 4597370 503013..504032 1 NC_008699.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sth:STH770 LacI family transcriptional repressor; LacI family transcriptional regulator 504032 4597370 Noca_0471 Nocardioides sp. JS614 LacI family transcriptional regulator YP_921700.1 503013 D 196162 CDS YP_921701.1 119714736 4597371 complement(504157..504912) 1 NC_008699.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rha:RHA1_ro06583 hypothetical protein; type 11 methyltransferase 504912 4597371 Noca_0472 Nocardioides sp. JS614 type 11 methyltransferase YP_921701.1 504157 R 196162 CDS YP_921702.1 119714737 4597372 complement(504920..505558) 1 NC_008699.1 KEGG: pac:PPA0314 hypothetical protein; hypothetical protein 505558 4597372 Noca_0473 Nocardioides sp. JS614 hypothetical protein YP_921702.1 504920 R 196162 CDS YP_921703.1 119714738 4597373 complement(505707..506477) 1 NC_008699.1 KEGG: sco:SCO3349 conserved hypothetical protein; hypothetical protein 506477 4597373 Noca_0474 Nocardioides sp. JS614 hypothetical protein YP_921703.1 505707 R 196162 CDS YP_921704.1 119714739 4597374 506536..507471 1 NC_008699.1 PFAM: Ppx/GppA phosphatase; KEGG: sco:SCO3348 putative DNA-binding protein; Ppx/GppA phosphatase 507471 4597374 Noca_0475 Nocardioides sp. JS614 Ppx/GppA phosphatase YP_921704.1 506536 D 196162 CDS YP_921705.1 119714740 4597375 507474..508262 1 NC_008699.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sco:SCO3347 conserved hypothetical protein; xylose isomerase domain-containing protein 508262 4597375 Noca_0476 Nocardioides sp. JS614 xylose isomerase domain-containing protein YP_921705.1 507474 D 196162 CDS YP_921706.1 119714741 4597376 508259..508867 1 NC_008699.1 PFAM: regulatory protein, TetR; KEGG: rha:RHA1_ro00946 transcriptional regulator, TetR family; TetR family transcriptional regulator 508867 4597376 Noca_0477 Nocardioides sp. JS614 TetR family transcriptional regulator YP_921706.1 508259 D 196162 CDS YP_921707.1 119714742 4597377 508897..509646 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nfa:nfa19890 putative ABC transporter ATP-binding protein; ABC transporter-like protein 509646 4597377 Noca_0478 Nocardioides sp. JS614 ABC transporter-like protein YP_921707.1 508897 D 196162 CDS YP_921708.1 119714743 4597378 509714..510451 1 NC_008699.1 PFAM: ABC-2 type transporter; KEGG: rha:RHA1_ro00945 ABC transporter, permease component; ABC transporter 510451 4597378 Noca_0479 Nocardioides sp. JS614 ABC transporter YP_921708.1 509714 D 196162 CDS YP_921709.1 119714744 4597379 510531..511481 1 NC_008699.1 PFAM: Proline dehydrogenase; KEGG: tfu:Tfu_0434 proline dehydrogenase; L-proline dehydrogenase 511481 4597379 Noca_0480 Nocardioides sp. JS614 L-proline dehydrogenase YP_921709.1 510531 D 196162 CDS YP_921710.1 119714745 4597380 511592..512395 1 NC_008699.1 KEGG: sma:SAV4724 putative pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; pyrroline-5-carboxylate reductase 512395 4597380 Noca_0481 Nocardioides sp. JS614 pyrroline-5-carboxylate reductase YP_921710.1 511592 D 196162 CDS YP_921711.1 119714746 4597381 complement(512432..513400) 1 NC_008699.1 KEGG: sma:SAV4725 putative tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase, class Ib; tryptophanyl-tRNA synthetase 513400 4597381 Noca_0482 Nocardioides sp. JS614 tryptophanyl-tRNA synthetase YP_921711.1 512432 R 196162 CDS YP_921712.1 119714747 4597382 513595..514779 1 NC_008699.1 PFAM: histone deacetylase superfamily; KEGG: tfu:Tfu_2707 putative acetoin utilization protein; histone deacetylase superfamily protein 514779 4597382 Noca_0483 Nocardioides sp. JS614 histone deacetylase superfamily protein YP_921712.1 513595 D 196162 CDS YP_921713.1 119714748 4597383 514976..515179 1 NC_008699.1 TIGRFAM: DNA binding domain, excisionase family; PFAM: Prophage CP4-57 regulatory; KEGG: cef:CE0431 hypothetical protein; DNA binding domain-containing protein 515179 4597383 Noca_0484 Nocardioides sp. JS614 DNA binding domain-containing protein YP_921713.1 514976 D 196162 CDS YP_921714.1 119714749 4597384 515312..515413 1 NC_008699.1 PFAM: Protein of unknown function DUF1713; KEGG: pac:PPA0320 hypothetical protein; hypothetical protein 515413 4597384 Noca_0485 Nocardioides sp. JS614 hypothetical protein YP_921714.1 515312 D 196162 CDS YP_921715.1 119714750 4597385 515440..516519 1 NC_008699.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: fra:Francci3_0479 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 516519 4597385 Noca_0486 Nocardioides sp. JS614 NAD-dependent epimerase/dehydratase YP_921715.1 515440 D 196162 CDS YP_921716.1 119714751 4597386 516512..517639 1 NC_008699.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: fal:FRAAL0978 putative acyltransferase; phospholipid/glycerol acyltransferase 517639 4597386 Noca_0487 Nocardioides sp. JS614 phospholipid/glycerol acyltransferase YP_921716.1 516512 D 196162 CDS YP_921717.1 119714752 4597387 complement(517793..518947) 1 NC_008699.1 KEGG: sma:SAV4734 hypothetical protein; hypothetical protein 518947 4597387 Noca_0488 Nocardioides sp. JS614 hypothetical protein YP_921717.1 517793 R 196162 CDS YP_921718.1 119714753 4597388 complement(519078..519878) 1 NC_008699.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sma:SAV4735 RNA polymerase ECF-subfamily sigma factor; sigma-70 region 2 domain-containing protein 519878 4597388 Noca_0489 Nocardioides sp. JS614 sigma-70 region 2 domain-containing protein YP_921718.1 519078 R 196162 CDS YP_921719.1 119714754 4597389 complement(520088..520981) 1 NC_008699.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sma:SAV4736 3-phosphoserine phosphatase; HAD family hydrolase 520981 4597389 Noca_0490 Nocardioides sp. JS614 HAD family hydrolase YP_921719.1 520088 R 196162 CDS YP_921720.1 119714755 4597390 521035..522582 1 NC_008699.1 PFAM: AMP-dependent synthetase and ligase; KEGG: tth:TTC1065 long-chain-fatty-acid-CoA ligase; AMP-dependent synthetase and ligase 522582 4597390 Noca_0491 Nocardioides sp. JS614 AMP-dependent synthetase and ligase YP_921720.1 521035 D 196162 CDS YP_921721.1 119714756 4597391 522579..522824 1 NC_008699.1 PFAM: glutaredoxin; glutaredoxin 2; KEGG: sma:SAV4737 redoxin; glutaredoxin 522824 4597391 Noca_0492 Nocardioides sp. JS614 glutaredoxin YP_921721.1 522579 D 196162 CDS YP_921722.1 119714757 4597392 523011..523688 1 NC_008699.1 modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex 523688 4597392 Noca_0493 Nocardioides sp. JS614 redox-sensing transcriptional repressor Rex YP_921722.1 523011 D 196162 CDS YP_921723.1 119714758 4597393 523685..524977 1 NC_008699.1 PFAM: glutamyl-tRNA reductase; Shikimate/quinate 5-dehydrogenase; KEGG: rha:RHA1_ro02053 glutamyl-tRNA reductase; glutamyl-tRNA reductase 524977 4597393 Noca_0494 Nocardioides sp. JS614 glutamyl-tRNA reductase YP_921723.1 523685 D 196162 CDS YP_921724.1 119714759 4597394 524974..525918 1 NC_008699.1 KEGG: rha:RHA1_ro02052 hydroxymethylbilane synthase; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase; porphobilinogen deaminase 525918 4597394 Noca_0495 Nocardioides sp. JS614 porphobilinogen deaminase YP_921724.1 524974 D 196162 CDS YP_921725.1 119714760 4597395 526010..527668 1 NC_008699.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: sco:SCO3317 putative uroporphyrin-III C-methyltransferase/uroporphyrinogen-III synthase; uroporphyrinogen-III synthase / uroporphyrinogen-III C-methyltransferase 527668 4597395 Noca_0496 Nocardioides sp. JS614 uroporphyrinogen-III synthase / uroporphyrinogen-III C-methyltransferase YP_921725.1 526010 D 196162 CDS YP_921726.1 119714761 4597396 527693..528694 1 NC_008699.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 528694 4597396 Noca_0497 Nocardioides sp. JS614 delta-aminolevulinic acid dehydratase YP_921726.1 527693 D 196162 CDS YP_921727.1 119714762 4597397 complement(528934..530103) 1 NC_008699.1 KEGG: sma:SAV6229 secreted protein; secreted protein 530103 4597397 Noca_0498 Nocardioides sp. JS614 secreted protein YP_921727.1 528934 R 196162 CDS YP_921728.1 119714763 4597398 530333..531670 1 NC_008699.1 TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: sma:SAV4795 putative glutamate-1-semialdehyde 2,1-aminotransferase; glutamate-1-semialdehyde 2,1-aminomutase 531670 4597398 Noca_0499 Nocardioides sp. JS614 glutamate-1-semialdehyde 2,1-aminomutase YP_921728.1 530333 D 196162 CDS YP_921729.1 119714764 4597399 531683..532363 1 NC_008699.1 PFAM: Phosphoglycerate mutase; KEGG: sma:SAV4796 phosphoglycerate mutase; phosphoglycerate mutase 532363 4597399 Noca_0500 Nocardioides sp. JS614 phosphoglycerate mutase YP_921729.1 531683 D 196162 CDS YP_921730.1 119714765 4597400 532363..532965 1 NC_008699.1 PFAM: Redoxin domain protein; KEGG: pac:PPA0325 hypothetical protein; redoxin domain-containing protein 532965 4597400 Noca_0501 Nocardioides sp. JS614 redoxin domain-containing protein YP_921730.1 532363 D 196162 CDS YP_921731.1 119714766 4597401 532958..533719 1 NC_008699.1 PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: sco:SCO4473 putative cytochrome biogenesis related protein; cytochrome c biogenesis protein, transmembrane region 533719 4597401 Noca_0502 Nocardioides sp. JS614 cytochrome c biogenesis protein, transmembrane region YP_921731.1 532958 D 196162 CDS YP_921732.1 119714767 4597402 533802..535400 1 NC_008699.1 PFAM: ResB family protein; KEGG: sco:SCO4474 putative integral membrane protein; ResB family protein 535400 4597402 Noca_0503 Nocardioides sp. JS614 ResB family protein YP_921732.1 533802 D 196162 CDS YP_921733.1 119714768 4597403 535397..536422 1 NC_008699.1 PFAM: cytochrome c assembly protein; KEGG: pac:PPA0328 putative cytochrome c biogenesis protein; cytochrome c assembly protein 536422 4597403 Noca_0504 Nocardioides sp. JS614 cytochrome c assembly protein YP_921733.1 535397 D 196162 CDS YP_921734.1 119714769 4597404 complement(536673..536867) 1 NC_008699.1 hypothetical protein 536867 4597404 Noca_0505 Nocardioides sp. JS614 hypothetical protein YP_921734.1 536673 R 196162 CDS YP_921735.1 119714770 4597405 536911..537180 1 NC_008699.1 hypothetical protein 537180 4597405 Noca_0506 Nocardioides sp. JS614 hypothetical protein YP_921735.1 536911 D 196162 CDS YP_921736.1 119714771 4597406 complement(537409..538302) 1 NC_008699.1 catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 538302 4597406 Noca_0507 Nocardioides sp. JS614 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_921736.1 537409 R 196162 CDS YP_921737.1 119714772 4597407 538338..539339 1 NC_008699.1 PFAM: AMP-dependent synthetase and ligase; KEGG: tfu:Tfu_1408 putative ortho-succinylbenzoate-CoA synthetase; AMP-dependent synthetase and ligase 539339 4597407 Noca_0508 Nocardioides sp. JS614 AMP-dependent synthetase and ligase YP_921737.1 538338 D 196162 CDS YP_921738.1 119714773 4597408 539330..540292 1 NC_008699.1 catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; O-succinylbenzoate synthase 540292 4597408 Noca_0509 Nocardioides sp. JS614 O-succinylbenzoate synthase YP_921738.1 539330 D 196162 CDS YP_921739.1 119714774 4597409 540289..541902 1 NC_008699.1 KEGG: pac:PPA0903 menaquinone biosynthesis protein; 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase 541902 4597409 Noca_0510 Nocardioides sp. JS614 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase YP_921739.1 540289 D 196162 CDS YP_921740.1 119714775 4597410 541936..543810 1 NC_008699.1 TIGRFAM: Na+/H+ antiporter; PFAM: sodium/hydrogen exchanger; KEGG: mmc:Mmcs_0521 Na+/H+ antiporter; Na+/H+ antiporter 543810 4597410 Noca_0511 Nocardioides sp. JS614 Na+/H+ antiporter YP_921740.1 541936 D 196162 CDS YP_921741.1 119714776 4597411 complement(543868..545064) 1 NC_008699.1 PFAM: cytochrome P450; KEGG: mmc:Mmcs_3241 cytochrome P450; cytochrome P450 545064 4597411 Noca_0512 Nocardioides sp. JS614 cytochrome P450 YP_921741.1 543868 R 196162 CDS YP_921742.1 119714777 4596433 complement(545122..545628) 1 NC_008699.1 PFAM: GCN5-related N-acetyltransferase; KEGG: nfa:nfa41970 putative enoyl-CoA hydratase/isomerase family protein; N-acetyltransferase GCN5 545628 4596433 Noca_0513 Nocardioides sp. JS614 N-acetyltransferase GCN5 YP_921742.1 545122 R 196162 CDS YP_921743.1 119714778 4596434 complement(545625..546233) 1 NC_008699.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: sma:SAV7466 hypothetical protein; lysine exporter protein LysE/YggA 546233 4596434 Noca_0514 Nocardioides sp. JS614 lysine exporter protein LysE/YggA YP_921743.1 545625 R 196162 CDS YP_921744.1 119714779 4596435 546289..546924 1 NC_008699.1 PFAM: beta-lactamase domain protein; KEGG: sma:SAV1967 hypothetical protein; beta-lactamase domain-containing protein 546924 4596435 Noca_0515 Nocardioides sp. JS614 beta-lactamase domain-containing protein YP_921744.1 546289 D 196162 CDS YP_921745.1 119714780 4596436 complement(547044..548330) 1 NC_008699.1 TIGRFAM: isochorismate synthases; PFAM: Anthranilate synthase component I and chorismate binding protein; KEGG: tfu:Tfu_1413 isochorismate synthase; isochorismate synthase 548330 4596436 Noca_0516 Nocardioides sp. JS614 isochorismate synthase YP_921745.1 547044 R 196162 CDS YP_921746.1 119714781 4596437 548444..549013 1 NC_008699.1 hypothetical protein 549013 4596437 Noca_0517 Nocardioides sp. JS614 hypothetical protein YP_921746.1 548444 D 196162 CDS YP_921747.1 119714782 4596438 complement(549035..549964) 1 NC_008699.1 PFAM: Peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein; KEGG: sma:SAV3383 lipoprotein; peptidoglycan binding domain-containing protein 549964 4596438 Noca_0518 Nocardioides sp. JS614 peptidoglycan binding domain-containing protein YP_921747.1 549035 R 196162 CDS YP_921748.1 119714783 4596439 550120..550809 1 NC_008699.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 550809 ubiE 4596439 ubiE Nocardioides sp. JS614 ubiquinone/menaquinone biosynthesis methyltransferase YP_921748.1 550120 D 196162 CDS YP_921749.1 119714784 4596440 551159..551518 1 NC_008699.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; KEGG: sma:SAV4837 putative NADH dehydrogenase chain A; NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 551518 4596440 Noca_0520 Nocardioides sp. JS614 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 YP_921749.1 551159 D 196162 CDS YP_921750.1 119714785 4596441 551532..552086 1 NC_008699.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 552086 4596441 Noca_0521 Nocardioides sp. JS614 NADH dehydrogenase subunit B YP_921750.1 551532 D 196162 CDS YP_921751.1 119714786 4596442 552083..552835 1 NC_008699.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit C 552835 4596442 Noca_0522 Nocardioides sp. JS614 NADH dehydrogenase subunit C YP_921751.1 552083 D 196162 CDS YP_921752.1 119714787 4596443 552835..554175 1 NC_008699.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D 554175 4596443 Noca_0523 Nocardioides sp. JS614 NADH dehydrogenase subunit D YP_921752.1 552835 D 196162 CDS YP_921753.1 119714788 4596444 554172..554963 1 NC_008699.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E 554963 4596444 Noca_0524 Nocardioides sp. JS614 NADH dehydrogenase subunit E YP_921753.1 554172 D 196162 CDS YP_921754.1 119714789 4596445 554960..556282 1 NC_008699.1 KEGG: rha:RHA1_ro05914 probable NADH dehydrogenase subunit F; TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; NADH-quinone oxidoreductase subunit F 556282 4596445 Noca_0525 Nocardioides sp. JS614 NADH-quinone oxidoreductase subunit F YP_921754.1 554960 D 196162 CDS YP_921755.1 119714790 4596446 556279..558714 1 NC_008699.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G 558714 4596446 Noca_0526 Nocardioides sp. JS614 NADH dehydrogenase subunit G YP_921755.1 556279 D 196162 CDS YP_921756.1 119714791 4596447 558711..560060 1 NC_008699.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H 560060 4596447 Noca_0527 Nocardioides sp. JS614 NADH dehydrogenase subunit H YP_921756.1 558711 D 196162 CDS YP_921757.1 119714792 4596448 560060..560650 1 NC_008699.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 560650 4596448 Noca_0528 Nocardioides sp. JS614 NADH dehydrogenase subunit I YP_921757.1 560060 D 196162 CDS YP_921758.1 119714793 4596449 560647..561474 1 NC_008699.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J 561474 4596449 Noca_0529 Nocardioides sp. JS614 NADH dehydrogenase subunit J YP_921758.1 560647 D 196162 CDS YP_921759.1 119714794 4596450 561471..561770 1 NC_008699.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K 561770 4596450 Noca_0530 Nocardioides sp. JS614 NADH dehydrogenase subunit K YP_921759.1 561471 D 196162 CDS YP_921760.1 119714795 4596451 561784..563715 1 NC_008699.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L 563715 4596451 Noca_0531 Nocardioides sp. JS614 NADH dehydrogenase subunit L YP_921760.1 561784 D 196162 CDS YP_921761.1 119714796 4596199 563712..565241 1 NC_008699.1 KEGG: rha:RHA1_ro05921 probable NADH dehydrogenase subunit M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase, chain M 565241 4596199 Noca_0532 Nocardioides sp. JS614 proton-translocating NADH-quinone oxidoreductase, chain M YP_921761.1 563712 D 196162 CDS YP_921762.1 119714797 4596200 565241..566842 1 NC_008699.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N 566842 4596200 Noca_0533 Nocardioides sp. JS614 NADH dehydrogenase subunit N YP_921762.1 565241 D 196162 CDS YP_921763.1 119714798 4596201 566839..567843 1 NC_008699.1 PFAM: Polyprenyl synthetase; KEGG: sco:SCO4583 putative polyprenyl diphosphate synthase; trans-hexaprenyltranstransferase 567843 4596201 Noca_0534 Nocardioides sp. JS614 trans-hexaprenyltranstransferase YP_921763.1 566839 D 196162 CDS YP_921764.1 119714799 4596202 complement(567946..569427) 1 NC_008699.1 TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6, transmembrane; KEGG: sma:SAV4873 RarD protein; transporter DMT superfamily protein 569427 4596202 Noca_0535 Nocardioides sp. JS614 transporter DMT superfamily protein YP_921764.1 567946 R 196162 CDS YP_921765.1 119714800 4596203 complement(569507..570622) 1 NC_008699.1 catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; 2-oxoglutarate ferredoxin oxidoreductase subunit beta 570622 4596203 Noca_0536 Nocardioides sp. JS614 2-oxoglutarate ferredoxin oxidoreductase subunit beta YP_921765.1 569507 R 196162 CDS YP_921766.1 119714801 4596204 complement(570619..572601) 1 NC_008699.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: tfu:Tfu_2674 2-oxoglutarate ferredoxin oxidoreductase, alpha subunit; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein 572601 4596204 Noca_0537 Nocardioides sp. JS614 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein YP_921766.1 570619 R 196162 CDS YP_921767.1 119714802 4596205 572921..573958 1 NC_008699.1 TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: mmc:Mmcs_3482 thiosulphate-binding protein; sulfate ABC transporter, periplasmic sulfate-binding protein 573958 4596205 Noca_0538 Nocardioides sp. JS614 sulfate ABC transporter, periplasmic sulfate-binding protein YP_921767.1 572921 D 196162 CDS YP_921768.1 119714803 4596206 573958..574839 1 NC_008699.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mbo:Mb2421c probable sulfate-transport integral membrane protein ABC transporter CysT; sulfate ABC transporter, inner membrane subunit CysT 574839 4596206 Noca_0539 Nocardioides sp. JS614 sulfate ABC transporter, inner membrane subunit CysT YP_921768.1 573958 D 196162 CDS YP_921769.1 119714804 4596207 574832..575653 1 NC_008699.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mtc:MT2469 sulfate ABC transporter, permease protein; sulfate ABC transporter permease 575653 4596207 Noca_0540 Nocardioides sp. JS614 sulfate ABC transporter permease YP_921769.1 574832 D 196162 CDS YP_921770.1 119714805 4596208 575669..576688 1 NC_008699.1 KEGG: mpa:MAP2210c sulfate transport system ATP-binding protein; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; sulfate ABC transporter ATPase 576688 4596208 Noca_0541 Nocardioides sp. JS614 sulfate ABC transporter ATPase YP_921770.1 575669 D 196162 CDS YP_921771.1 119714806 4596209 complement(576702..577691) 1 NC_008699.1 PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: ccr:CC1928 inosine-uridine preferring nucleoside hydrolase; inosine/uridine-preferring nucleoside hydrolase 577691 4596209 Noca_0542 Nocardioides sp. JS614 inosine/uridine-preferring nucleoside hydrolase YP_921771.1 576702 R 196162 CDS YP_921772.1 119714807 4596210 complement(577710..578474) 1 NC_008699.1 PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: rxy:Rxyl_1898 transcriptional regulator, GntR family; GntR family transcriptional regulator 578474 4596210 Noca_0543 Nocardioides sp. JS614 GntR family transcriptional regulator YP_921772.1 577710 R 196162 CDS YP_921773.1 119714808 4596211 complement(578474..579169) 1 NC_008699.1 KEGG: syn:sll1776 deoxyribose-phosphate aldolase; TIGRFAM: deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; deoxyribose-phosphate aldolase 579169 4596211 Noca_0544 Nocardioides sp. JS614 deoxyribose-phosphate aldolase YP_921773.1 578474 R 196162 CDS YP_921774.1 119714809 4596212 complement(579216..580130) 1 NC_008699.1 PFAM: PfkB domain protein; KEGG: rxy:Rxyl_1888 PfkB; ribokinase-like domain-containing protein 580130 4596212 Noca_0545 Nocardioides sp. JS614 ribokinase-like domain-containing protein YP_921774.1 579216 R 196162 CDS YP_921775.1 119714810 4596213 580692..581231 1 NC_008699.1 hypothetical protein 581231 4596213 Noca_0546 Nocardioides sp. JS614 hypothetical protein YP_921775.1 580692 D 196162 CDS YP_921776.1 119714811 4596214 581228..581422 1 NC_008699.1 hypothetical protein 581422 4596214 Noca_0547 Nocardioides sp. JS614 hypothetical protein YP_921776.1 581228 D 196162 CDS YP_921777.1 119714812 4596215 581823..582059 1 NC_008699.1 hypothetical protein 582059 4596215 Noca_0548 Nocardioides sp. JS614 hypothetical protein YP_921777.1 581823 D 196162 CDS YP_921778.1 119714813 4596216 complement(582212..582445) 1 NC_008699.1 hypothetical protein 582445 4596216 Noca_0549 Nocardioides sp. JS614 hypothetical protein YP_921778.1 582212 R 196162 CDS YP_921779.1 119714814 4596217 complement(582461..585370) 1 NC_008699.1 TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: nfa:nfa15380 putative phage tail; TP901 family phage tail tape measure protein 585370 4596217 Noca_0550 Nocardioides sp. JS614 TP901 family phage tail tape measure protein YP_921779.1 582461 R 196162 CDS YP_921780.1 119714815 4596218 complement(585456..585692) 1 NC_008699.1 hypothetical protein 585692 4596218 Noca_0551 Nocardioides sp. JS614 hypothetical protein YP_921780.1 585456 R 196162 CDS YP_921781.1 119714816 4596219 complement(585699..586034) 1 NC_008699.1 hypothetical protein 586034 4596219 Noca_0552 Nocardioides sp. JS614 hypothetical protein YP_921781.1 585699 R 196162 CDS YP_921782.1 119714817 4596220 complement(586031..586432) 1 NC_008699.1 TIGRFAM: DNA binding domain, excisionase family; DNA binding domain-containing protein 586432 4596220 Noca_0553 Nocardioides sp. JS614 DNA binding domain-containing protein YP_921782.1 586031 R 196162 CDS YP_921783.1 119714818 4596221 complement(586429..587172) 1 NC_008699.1 hypothetical protein 587172 4596221 Noca_0554 Nocardioides sp. JS614 hypothetical protein YP_921783.1 586429 R 196162 CDS YP_921784.1 119714819 4596222 complement(587200..588729) 1 NC_008699.1 KEGG: lxx:Lxx24020 phage-related terminase; hypothetical protein 588729 4596222 Noca_0555 Nocardioides sp. JS614 hypothetical protein YP_921784.1 587200 R 196162 CDS YP_921785.1 119714820 4596223 complement(588726..589163) 1 NC_008699.1 KEGG: lxx:Lxx24010 hypothetical protein; hypothetical protein 589163 4596223 Noca_0556 Nocardioides sp. JS614 hypothetical protein YP_921785.1 588726 R 196162 CDS YP_921786.1 119714821 4596224 complement(589544..589915) 1 NC_008699.1 hypothetical protein 589915 4596224 Noca_0557 Nocardioides sp. JS614 hypothetical protein YP_921786.1 589544 R 196162 CDS YP_921787.1 119714822 4596225 complement(590431..591093) 1 NC_008699.1 hypothetical protein 591093 4596225 Noca_0558 Nocardioides sp. JS614 hypothetical protein YP_921787.1 590431 R 196162 CDS YP_921788.1 119714823 4596226 complement(591094..591324) 1 NC_008699.1 hypothetical protein 591324 4596226 Noca_0559 Nocardioides sp. JS614 hypothetical protein YP_921788.1 591094 R 196162 CDS YP_921789.1 119714824 4596227 complement(591317..591718) 1 NC_008699.1 hypothetical protein 591718 4596227 Noca_0560 Nocardioides sp. JS614 hypothetical protein YP_921789.1 591317 R 196162 CDS YP_921790.1 119714825 4596228 complement(591718..591897) 1 NC_008699.1 TIGRFAM: DNA binding domain, excisionase family; KEGG: mmc:Mmcs_4829 hypothetical protein; DNA binding domain-containing protein 591897 4596228 Noca_0561 Nocardioides sp. JS614 DNA binding domain-containing protein YP_921790.1 591718 R 196162 CDS YP_921791.1 119714826 4596229 591983..592798 1 NC_008699.1 hypothetical protein 592798 4596229 Noca_0562 Nocardioides sp. JS614 hypothetical protein YP_921791.1 591983 D 196162 CDS YP_921792.1 119714827 4596230 592798..593883 1 NC_008699.1 PFAM: phage integrase family protein; KEGG: mmc:Mmcs_4828 phage integrase; phage integrase family protein 593883 4596230 Noca_0563 Nocardioides sp. JS614 phage integrase family protein YP_921792.1 592798 D 196162 CDS YP_921793.1 119714828 4596231 complement(594467..594958) 1 NC_008699.1 putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein 594958 4596231 Noca_0564 Nocardioides sp. JS614 putative nucleotide-binding protein YP_921793.1 594467 R 196162 CDS YP_921794.1 119714829 4596233 complement(595341..596720) 1 NC_008699.1 PFAM: phage integrase family protein; KEGG: sco:SCO5349 integrase; phage integrase family protein 596720 4596233 Noca_0565 Nocardioides sp. JS614 phage integrase family protein YP_921794.1 595341 R 196162 CDS YP_921795.1 119714830 4596234 complement(596887..597114) 1 NC_008699.1 KEGG: sco:SCO5348 excisionase; hypothetical protein 597114 4596234 Noca_0566 Nocardioides sp. JS614 hypothetical protein YP_921795.1 596887 R 196162 CDS YP_921796.1 119714831 4596235 complement(597415..598725) 1 NC_008699.1 hypothetical protein 598725 4596235 Noca_0567 Nocardioides sp. JS614 hypothetical protein YP_921796.1 597415 R 196162 CDS YP_921797.1 119714832 4596236 complement(598725..599024) 1 NC_008699.1 hypothetical protein 599024 4596236 Noca_0568 Nocardioides sp. JS614 hypothetical protein YP_921797.1 598725 R 196162 CDS YP_921798.1 119714833 4596162 complement(599141..599677) 1 NC_008699.1 hypothetical protein 599677 4596162 Noca_0569 Nocardioides sp. JS614 hypothetical protein YP_921798.1 599141 R 196162 CDS YP_921799.1 119714834 4596163 complement(599689..600102) 1 NC_008699.1 PFAM: single-strand binding protein/Primosomal replication protein n; single-strand binding protein/primosomal replication protein n 600102 4596163 Noca_0570 Nocardioides sp. JS614 single-strand binding protein/primosomal replication protein n YP_921799.1 599689 R 196162 CDS YP_921800.1 119714835 4596164 600243..600554 1 NC_008699.1 PFAM: transposase IS3/IS911 family protein; KEGG: cef:CE2618 putative transposase; transposase IS3/IS911 family protein 600554 4596164 Noca_0571 Nocardioides sp. JS614 transposase IS3/IS911 family protein YP_921800.1 600243 D 196162 CDS YP_921801.1 119714836 4596166 601264..602703 1 NC_008699.1 PFAM: Integrase, catalytic region; KEGG: mmc:Mmcs_5505 integrase, catalytic region; integrase catalytic subunit 602703 4596166 Noca_0573 Nocardioides sp. JS614 integrase catalytic subunit YP_921801.1 601264 D 196162 CDS YP_921802.1 119714837 4596167 603183..604172 1 NC_008699.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 604172 4596167 Noca_0574 Nocardioides sp. JS614 molybdenum cofactor biosynthesis protein A YP_921802.1 603183 D 196162 CDS YP_921803.1 119714838 4596168 complement(604897..605787) 1 NC_008699.1 PFAM: oxidoreductase domain protein; NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: mxa:MXAN_2154 NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase 605787 4596168 Noca_0575 Nocardioides sp. JS614 6-phosphogluconate dehydrogenase YP_921803.1 604897 R 196162 CDS YP_921804.1 119714839 4596169 606498..607802 1 NC_008699.1 PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; protein of unknown function DUF1486; KEGG: nfa:nfa29880 hypothetical protein; hypothetical protein 607802 4596169 Noca_0576 Nocardioides sp. JS614 hypothetical protein YP_921804.1 606498 D 196162 CDS YP_921805.1 119714840 4596171 610474..610818 1 NC_008699.1 PFAM: protein of unknown function DUF336; KEGG: mlo:msr9402 hypothetical protein; hypothetical protein 610818 4596171 Noca_0578 Nocardioides sp. JS614 hypothetical protein YP_921805.1 610474 D 196162 CDS YP_921806.1 119714841 4596172 complement(611044..613143) 1 NC_008699.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; KEGG: sme:SMa0257 probable methylamine; NADH:flavin oxidoreductase 613143 4596172 Noca_0579 Nocardioides sp. JS614 NADH:flavin oxidoreductase YP_921806.1 611044 R 196162 CDS YP_921807.1 119714842 4596174 614126..615679 1 NC_008699.1 PFAM: Integrase, catalytic region; KEGG: rha:RHA1_ro06977 possible transposase; integrase catalytic subunit 615679 4596174 Noca_0581 Nocardioides sp. JS614 integrase catalytic subunit YP_921807.1 614126 D 196162 CDS YP_921808.1 119714843 4596175 615676..616455 1 NC_008699.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: rha:RHA1_ro06982 possible insertion sequence ATP-binding protein; IstB ATP binding domain-containing protein 616455 4596175 Noca_0582 Nocardioides sp. JS614 IstB ATP binding domain-containing protein YP_921808.1 615676 D 196162 CDS YP_921809.1 119714844 4596178 complement(618228..618641) 1 NC_008699.1 KEGG: mxa:MXAN_4930 amine oxidase, flavin-containing; monoamine oxidase-like 618641 4596178 Noca_0585 Nocardioides sp. JS614 monoamine oxidase-like YP_921809.1 618228 R 196162 CDS YP_921810.1 119714845 4596179 618937..620220 1 NC_008699.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: aor:AO090020000701 monoamine oxidase Pfam: FAD_binding_3 HI0933_like FAD_binding_2 GIDA DAO Amino_oxidase; amine oxidase 620220 4596179 Noca_0586 Nocardioides sp. JS614 amine oxidase YP_921810.1 618937 D 196162 CDS YP_921811.1 119714846 4596180 620470..620763 1 NC_008699.1 hypothetical protein 620763 4596180 Noca_0587 Nocardioides sp. JS614 hypothetical protein YP_921811.1 620470 D 196162 CDS YP_921812.1 119714847 4596181 621282..622454 1 NC_008699.1 KEGG: fal:FRAAL2528 hypothetical protein; sugar ABC transporter periplasmic component-like protein 622454 4596181 Noca_0588 Nocardioides sp. JS614 sugar ABC transporter periplasmic component-like protein YP_921812.1 621282 D 196162 CDS YP_921813.1 119714848 4596182 622577..623803 1 NC_008699.1 KEGG: rha:RHA1_ro03774 hypothetical protein; hypothetical protein 623803 4596182 Noca_0589 Nocardioides sp. JS614 hypothetical protein YP_921813.1 622577 D 196162 CDS YP_921814.1 119714849 4596183 623979..624278 1 NC_008699.1 PFAM: Stress responsive alpha-beta barrel domain protein; KEGG: mmp:MMP0887 hypothetical protein; stress responsive alpha-beta barrel domain-containing protein 624278 4596183 Noca_0590 Nocardioides sp. JS614 stress responsive alpha-beta barrel domain-containing protein YP_921814.1 623979 D 196162 CDS YP_921815.1 119714850 4596184 624278..625204 1 NC_008699.1 PFAM: cyclase family protein; KEGG: pfl:PFL_4035 hypothetical polyketide cyclase; cyclase family protein 625204 4596184 Noca_0591 Nocardioides sp. JS614 cyclase family protein YP_921815.1 624278 D 196162 CDS YP_921816.1 119714851 4596185 625236..626420 1 NC_008699.1 PFAM: monooxygenase, FAD-binding; KEGG: bur:Bcep18194_A4962 hypothetical protein; hypothetical protein 626420 4596185 Noca_0592 Nocardioides sp. JS614 hypothetical protein YP_921816.1 625236 D 196162 CDS YP_921817.1 119714852 4596186 626505..627239 1 NC_008699.1 PFAM: carbon monoxide dehydrogenase subunit G; KEGG: mmc:Mmcs_4601 carbon monoxide dehydrogenase subunit G; carbon monoxide dehydrogenase subunit G 627239 4596186 Noca_0593 Nocardioides sp. JS614 carbon monoxide dehydrogenase subunit G YP_921817.1 626505 D 196162 CDS YP_921818.1 119714853 4596187 627274..628125 1 NC_008699.1 PFAM: molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: rpb:RPB_3113 molybdopterin dehydrogenase, FAD-binding; molybdopterin dehydrogenase 628125 4596187 Noca_0594 Nocardioides sp. JS614 molybdopterin dehydrogenase YP_921818.1 627274 D 196162 CDS YP_921819.1 119714854 4596188 628127..628633 1 NC_008699.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rxy:Rxyl_1873 (2Fe-2S)-binding protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein 628633 4596188 Noca_0595 Nocardioides sp. JS614 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_921819.1 628127 D 196162 CDS YP_921820.1 119714855 4596189 628630..631035 1 NC_008699.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: rxy:Rxyl_1872 carbon-monoxide dehydrogenase; xanthine dehydrogenase, molybdenum binding subunit apoprotein 631035 4596189 Noca_0596 Nocardioides sp. JS614 xanthine dehydrogenase, molybdenum binding subunit apoprotein YP_921820.1 628630 D 196162 CDS YP_921821.1 119714856 4596190 631032..631874 1 NC_008699.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: sma:SAV4383 hydrolase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 631874 4596190 Noca_0597 Nocardioides sp. JS614 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_921821.1 631032 D 196162 CDS YP_921822.1 119714857 4596193 complement(634392..635381) 1 NC_008699.1 PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: eba:p2A227 putative integrase; phage integrase family protein 635381 4596193 Noca_0600 Nocardioides sp. JS614 phage integrase family protein YP_921822.1 634392 R 196162 CDS YP_921823.1 119714858 4596194 complement(635378..636376) 1 NC_008699.1 PFAM: phage integrase family protein; KEGG: sus:Acid_3311 phage integrase family protein; phage integrase family protein 636376 4596194 Noca_0601 Nocardioides sp. JS614 phage integrase family protein YP_921823.1 635378 R 196162 CDS YP_921824.1 119714859 4596195 complement(636373..637611) 1 NC_008699.1 PFAM: phage integrase family protein; KEGG: eba:p2A229 putative integrase; phage integrase family protein 637611 4596195 Noca_0602 Nocardioides sp. JS614 phage integrase family protein YP_921824.1 636373 R 196162 CDS YP_921825.1 119714860 4596196 637847..638242 1 NC_008699.1 KEGG: mmc:Mmcs_3178 integrase, catalytic region; integrase catalytic subunit 638242 4596196 Noca_0603 Nocardioides sp. JS614 integrase catalytic subunit YP_921825.1 637847 D 196162 CDS YP_921826.1 119714861 4596197 complement(638469..639644) 1 NC_008699.1 KEGG: fal:FRAAL2528 hypothetical protein; sugar ABC transporter periplasmic component-like protein 639644 4596197 Noca_0604 Nocardioides sp. JS614 sugar ABC transporter periplasmic component-like protein YP_921826.1 638469 R 196162 CDS YP_921827.1 119714862 4596023 complement(641063..641557) 1 NC_008699.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: gka:GKP18 carbon monoxide dehydrogenase small chain; 2Fe-2S iron-sulfur cluster binding domain-containing protein 641557 4596023 Noca_0606 Nocardioides sp. JS614 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_921827.1 641063 R 196162 CDS YP_921828.1 119714863 4596024 complement(641554..642441) 1 NC_008699.1 PFAM: molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: rpb:RPB_3113 molybdopterin dehydrogenase, FAD-binding; molybdopterin dehydrogenase 642441 4596024 Noca_0607 Nocardioides sp. JS614 molybdopterin dehydrogenase YP_921828.1 641554 R 196162 CDS YP_921829.1 119714864 4596025 complement(642623..643873) 1 NC_008699.1 KEGG: rha:RHA1_ro03774 hypothetical protein; CdaR family transcriptional regulator 643873 4596025 Noca_0608 Nocardioides sp. JS614 CdaR family transcriptional regulator YP_921829.1 642623 R 196162 CDS YP_921830.1 119714865 4596026 complement(643944..644687) 1 NC_008699.1 hypothetical protein 644687 4596026 Noca_0609 Nocardioides sp. JS614 hypothetical protein YP_921830.1 643944 R 196162 CDS YP_921831.1 119714866 4596027 complement(644690..645766) 1 NC_008699.1 PFAM: inner-membrane translocator; KEGG: fal:FRAAL2526 putative ribose transport system permease protein; putative membrane protein; inner-membrane translocator 645766 4596027 Noca_0610 Nocardioides sp. JS614 inner-membrane translocator YP_921831.1 644690 R 196162 CDS YP_921832.1 119714867 4596028 complement(645763..647367) 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fal:FRAAL2527 putative ATP-binding protein of sugar ABC transporter; ABC transporter-like protein 647367 4596028 Noca_0611 Nocardioides sp. JS614 ABC transporter-like protein YP_921832.1 645763 R 196162 CDS YP_921833.1 119714868 4596029 complement(647541..649913) 1 NC_008699.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: rxy:Rxyl_1874 carbon-monoxide dehydrogenase; xanthine dehydrogenase, molybdenum binding subunit apoprotein 649913 4596029 Noca_0612 Nocardioides sp. JS614 xanthine dehydrogenase, molybdenum binding subunit apoprotein YP_921833.1 647541 R 196162 CDS YP_921834.1 119714869 4596030 650063..651214 1 NC_008699.1 PFAM: protein of unknown function DUF1100, hydrolase family protein; KEGG: ppu:PP_3195 hypothetical protein; hypothetical protein 651214 4596030 Noca_0613 Nocardioides sp. JS614 hypothetical protein YP_921834.1 650063 D 196162 CDS YP_921835.1 119714870 4596031 651308..651658 1 NC_008699.1 PFAM: protein of unknown function DUF861, cupin_3; Cupin 2, conserved barrel domain protein; KEGG: sma:SAV6269 hypothetical protein; hypothetical protein 651658 4596031 Noca_0614 Nocardioides sp. JS614 hypothetical protein YP_921835.1 651308 D 196162 CDS YP_921836.1 119714871 4596033 654191..654460 1 NC_008699.1 hypothetical protein 654460 4596033 Noca_0616 Nocardioides sp. JS614 hypothetical protein YP_921836.1 654191 D 196162 CDS YP_921837.1 119714872 4596035 complement(654931..657102) 1 NC_008699.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sme:SMa0257 probable methylamine; NADH:flavin oxidoreductase 657102 4596035 Noca_0618 Nocardioides sp. JS614 NADH:flavin oxidoreductase YP_921837.1 654931 R 196162 CDS YP_921838.1 119714873 4596036 complement(657099..658139) 1 NC_008699.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: nfa:nfa30730 hypothetical protein; hypothetical protein 658139 4596036 Noca_0619 Nocardioides sp. JS614 hypothetical protein YP_921838.1 657099 R 196162 CDS YP_921839.1 119714874 4596037 658209..659132 1 NC_008699.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sma:SAV4790 LysR-family transcriptional regulator; substrate-binding protein LysR 659132 4596037 Noca_0620 Nocardioides sp. JS614 substrate-binding protein LysR YP_921839.1 658209 D 196162 CDS YP_921840.1 119714875 4596038 659396..659788 1 NC_008699.1 PFAM: protein of unknown function DUF861, cupin_3; KEGG: mlo:mll2946 hypothetical protein; hypothetical protein 659788 4596038 Noca_0621 Nocardioides sp. JS614 hypothetical protein YP_921840.1 659396 D 196162 CDS YP_921841.1 119714876 4596039 660057..661448 1 NC_008699.1 PFAM: FAD dependent oxidoreductase; KEGG: fal:FRAAL6023 hypothetical protein; putative signal peptide; FAD dependent oxidoreductase 661448 4596039 Noca_0622 Nocardioides sp. JS614 FAD dependent oxidoreductase YP_921841.1 660057 D 196162 CDS YP_921842.1 119714877 4596044 663671..664000 1 NC_008699.1 PFAM: small multidrug resistance protein; KEGG: nfa:nfa19760 putative multi-drug efflux transporter; small multidrug resistance protein 664000 4596044 Noca_0627 Nocardioides sp. JS614 small multidrug resistance protein YP_921842.1 663671 D 196162 CDS YP_921843.1 119714878 4596047 665558..666643 1 NC_008699.1 PFAM: transposase, mutator type; KEGG: mbo:Mb3664c putative transposase; transposase, mutator type 666643 4596047 Noca_0630 Nocardioides sp. JS614 transposase, mutator type YP_921843.1 665558 D 196162 CDS YP_921844.1 119714879 4596048 666640..666786 1 NC_008699.1 KEGG: mbo:Mb3664c putative transposase; putative transposase 666786 4596048 Noca_0631 Nocardioides sp. JS614 putative transposase YP_921844.1 666640 D 196162 CDS YP_921845.1 119714880 4596049 complement(666989..667831) 1 NC_008699.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rha:RHA1_ro04979 probable ATPase, MoxR family; ATPase 667831 4596049 Noca_0632 Nocardioides sp. JS614 ATPase YP_921845.1 666989 R 196162 CDS YP_921846.1 119714881 4596050 complement(667825..669018) 1 NC_008699.1 PFAM: protein of unknown function DUF182; KEGG: mmc:Mmcs_0488 protein of unknown function DUF182; hypothetical protein 669018 4596050 Noca_0633 Nocardioides sp. JS614 hypothetical protein YP_921846.1 667825 R 196162 CDS YP_921847.1 119714882 4596051 complement(669040..670470) 1 NC_008699.1 PFAM: FAD dependent oxidoreductase; KEGG: bam:Bamb_3196 FAD dependent oxidoreductase; FAD dependent oxidoreductase 670470 4596051 Noca_0634 Nocardioides sp. JS614 FAD dependent oxidoreductase YP_921847.1 669040 R 196162 CDS YP_921848.1 119714883 4596052 670808..672442 1 NC_008699.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: nfa:nfa50890 putative ferredoxin reductase; 4Fe-4S ferredoxin 672442 4596052 Noca_0635 Nocardioides sp. JS614 4Fe-4S ferredoxin YP_921848.1 670808 D 196162 CDS YP_921849.1 119714884 4596053 672606..673238 1 NC_008699.1 PFAM: NADPH-dependent FMN reductase; flavodoxin/nitric oxide synthase; KEGG: mpa:MAP3035 putative Trp repressor binding protein; flavodoxin/nitric oxide synthase 673238 4596053 Noca_0636 Nocardioides sp. JS614 flavodoxin/nitric oxide synthase YP_921849.1 672606 D 196162 CDS YP_921850.1 119714885 4596054 complement(674153..675613) 1 NC_008699.1 PFAM: purine catabolism PurC domain protein; KEGG: mmc:Mmcs_3284 purine catabolism PurC-like protein; purine catabolism PurC domain-containing protein 675613 4596054 Noca_0637 Nocardioides sp. JS614 purine catabolism PurC domain-containing protein YP_921850.1 674153 R 196162 CDS YP_921851.1 119714886 4596055 complement(675751..676617) 1 NC_008699.1 KEGG: fra:Francci3_4407 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS; dihydropteroate synthase 676617 4596055 Noca_0638 Nocardioides sp. JS614 dihydropteroate synthase YP_921851.1 675751 R 196162 CDS YP_921852.1 119714887 4596056 complement(676625..677590) 1 NC_008699.1 PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: sco:SCO1081 putative electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha 677590 4596056 Noca_0639 Nocardioides sp. JS614 electron transfer flavoprotein subunit alpha YP_921852.1 676625 R 196162 CDS YP_921853.1 119714888 4596057 complement(677602..678402) 1 NC_008699.1 PFAM: electron transfer flavoprotein beta-subunit; KEGG: sco:SCO1082 putative electron transfer flavoprotein, beta subunit; electron transfer flavoprotein subunit beta 678402 4596057 Noca_0640 Nocardioides sp. JS614 electron transfer flavoprotein subunit beta YP_921853.1 677602 R 196162 CDS YP_921854.1 119714889 4596058 complement(678430..679320) 1 NC_008699.1 PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: tfu:Tfu_2571 methenyltetrahydrofolate cyclohydrolase; methenyltetrahydrofolate cyclohydrolase 679320 4596058 Noca_0641 Nocardioides sp. JS614 methenyltetrahydrofolate cyclohydrolase YP_921854.1 678430 R 196162 CDS YP_921855.1 119714890 4596059 679574..682021 1 NC_008699.1 PFAM: FAD dependent oxidoreductase; glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein, C-terminal barrel; KEGG: jan:Jann_2849 FAD dependent oxidoreductase; FAD dependent oxidoreductase 682021 4596059 Noca_0642 Nocardioides sp. JS614 FAD dependent oxidoreductase YP_921855.1 679574 D 196162 CDS YP_921856.1 119714891 4596060 682018..682872 1 NC_008699.1 TIGRFAM: formyltetrahydrofolate deformylase; PFAM: formyl transferase domain protein; amino acid-binding ACT domain protein; KEGG: bbr:BB4045 putative formyltetrahydrofolate deformylase; formyltetrahydrofolate deformylase 682872 4596060 Noca_0643 Nocardioides sp. JS614 formyltetrahydrofolate deformylase YP_921856.1 682018 D 196162 CDS YP_921857.1 119714892 4596061 complement(683272..684141) 1 NC_008699.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: mmc:Mmcs_3012 transcriptional regulator, LysR family; regulatory protein LysR 684141 4596061 Noca_0644 Nocardioides sp. JS614 regulatory protein LysR YP_921857.1 683272 R 196162 CDS YP_921858.1 119714893 4596062 684225..685583 1 NC_008699.1 TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; KEGG: mmc:Mmcs_2274 4-aminobutyrate aminotransferase; 4-aminobutyrate aminotransferase 685583 4596062 Noca_0645 Nocardioides sp. JS614 4-aminobutyrate aminotransferase YP_921858.1 684225 D 196162 CDS YP_921859.1 119714894 4599509 685580..686959 1 NC_008699.1 PFAM: aldehyde dehydrogenase; KEGG: mlo:mll5719 succinate-semialdehyde dehydrogenase; succinate semialdehyde dehydrogenase 686959 4599509 Noca_0646 Nocardioides sp. JS614 succinate semialdehyde dehydrogenase YP_921859.1 685580 D 196162 CDS YP_921860.1 119714895 4599510 complement(687414..688772) 1 NC_008699.1 PFAM: FAD dependent oxidoreductase; KEGG: rxy:Rxyl_1818 D-amino-acid dehydrogenase; D-amino-acid dehydrogenase 688772 4599510 Noca_0647 Nocardioides sp. JS614 D-amino-acid dehydrogenase YP_921860.1 687414 R 196162 CDS YP_921861.1 119714896 4599511 complement(688778..689056) 1 NC_008699.1 KEGG: sco:SCO6164 putative DnaK suppressor protein; putative DnaK suppressor protein 689056 4599511 Noca_0648 Nocardioides sp. JS614 putative DnaK suppressor protein YP_921861.1 688778 R 196162 CDS YP_921862.1 119714897 4599512 complement(689100..689555) 1 NC_008699.1 KEGG: pol:Bpro_0100 transcriptional regulators, TraR/DksA family; hypothetical protein 689555 4599512 Noca_0649 Nocardioides sp. JS614 hypothetical protein YP_921862.1 689100 R 196162 CDS YP_921863.1 119714898 4599513 complement(689659..690030) 1 NC_008699.1 hypothetical protein 690030 4599513 Noca_0650 Nocardioides sp. JS614 hypothetical protein YP_921863.1 689659 R 196162 CDS YP_921864.1 119714899 4599514 complement(690319..691260) 1 NC_008699.1 PFAM: metallophosphoesterase; KEGG: nfa:nfa48690 putative phosphoesterase; metallophosphoesterase 691260 4599514 Noca_0651 Nocardioides sp. JS614 metallophosphoesterase YP_921864.1 690319 R 196162 CDS YP_921865.1 119714900 4599515 complement(691270..691401) 1 NC_008699.1 hypothetical protein 691401 4599515 Noca_0652 Nocardioides sp. JS614 hypothetical protein YP_921865.1 691270 R 196162 CDS YP_921866.1 119714901 4599516 complement(691599..693053) 1 NC_008699.1 PFAM: monooxygenase, FAD-binding; KEGG: rha:RHA1_ro03540 pentachlorophenol monooxygenase; monooxygenase 693053 4599516 Noca_0653 Nocardioides sp. JS614 monooxygenase YP_921866.1 691599 R 196162 CDS YP_921867.1 119714902 4599517 693164..694732 1 NC_008699.1 KEGG: sma:SAV1313 hypothetical protein; hypothetical protein 694732 4599517 Noca_0654 Nocardioides sp. JS614 hypothetical protein YP_921867.1 693164 D 196162 CDS YP_921868.1 119714903 4599518 complement(694654..695829) 1 NC_008699.1 KEGG: rha:RHA1_ro02309 probable fumarylacetoacetase; TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate hydrolase 695829 4599518 Noca_0655 Nocardioides sp. JS614 fumarylacetoacetate hydrolase YP_921868.1 694654 R 196162 CDS YP_921869.1 119714904 4599519 complement(695826..696725) 1 NC_008699.1 KEGG: rha:RHA1_ro02310 hypothetical protein; hypothetical protein 696725 4599519 Noca_0656 Nocardioides sp. JS614 hypothetical protein YP_921869.1 695826 R 196162 CDS YP_921870.1 119714905 4599520 696778..697992 1 NC_008699.1 PFAM: homogentisate 1,2-dioxygenase; Cupin 2, conserved barrel domain protein; KEGG: rha:RHA1_ro02311 homogentisate 1,2-dioxygenase; homogentisate 1,2-dioxygenase 697992 4599520 Noca_0657 Nocardioides sp. JS614 homogentisate 1,2-dioxygenase YP_921870.1 696778 D 196162 CDS YP_921871.1 119714906 4599521 698009..698875 1 NC_008699.1 PFAM: aldo/keto reductase; KEGG: tma:TM1297 oxidoreductase, putative; aldo/keto reductase 698875 4599521 Noca_0658 Nocardioides sp. JS614 aldo/keto reductase YP_921871.1 698009 D 196162 CDS YP_921872.1 119714907 4599522 complement(698914..700026) 1 NC_008699.1 PFAM: glycosyl transferase, group 1; KEGG: pac:PPA1824 glycosyl transferase; group 1 glycosyl transferase 700026 4599522 Noca_0659 Nocardioides sp. JS614 group 1 glycosyl transferase YP_921872.1 698914 R 196162 CDS YP_921873.1 119714908 4599523 700093..700413 1 NC_008699.1 KEGG: lxx:Lxx05505 hypothetical protein; hypothetical protein 700413 4599523 Noca_0660 Nocardioides sp. JS614 hypothetical protein YP_921873.1 700093 D 196162 CDS YP_921874.1 119714909 4599524 complement(700424..701272) 1 NC_008699.1 KEGG: mmc:Mmcs_4148 hypothetical protein; hypothetical protein 701272 4599524 Noca_0661 Nocardioides sp. JS614 hypothetical protein YP_921874.1 700424 R 196162 CDS YP_921875.1 119714910 4599525 701441..703822 1 NC_008699.1 TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: rha:RHA1_ro03039 formate dehydrogenase; oxidoreductase alpha (molybdopterin) subunit 703822 4599525 Noca_0662 Nocardioides sp. JS614 oxidoreductase alpha (molybdopterin) subunit YP_921875.1 701441 D 196162 CDS YP_921876.1 119714911 4599526 703882..704937 1 NC_008699.1 PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: sco:SCO0468 hypothetical protein; pirin domain-containing protein 704937 4599526 Noca_0663 Nocardioides sp. JS614 pirin domain-containing protein YP_921876.1 703882 D 196162 CDS YP_921877.1 119714912 4599527 705040..705633 1 NC_008699.1 PFAM: methyladenine glycosylase; KEGG: cef:CE2657 putative 3-methyladenine-DNA glycosylase; DNA-3-methyladenine glycosylase I 705633 4599527 Noca_0664 Nocardioides sp. JS614 DNA-3-methyladenine glycosylase I YP_921877.1 705040 D 196162 CDS YP_921878.1 119714913 4599528 705814..706992 1 NC_008699.1 PFAM: ROK family protein; KEGG: rha:RHA1_ro02370 possible xylose repressor; ROK family protein 706992 4599528 Noca_0665 Nocardioides sp. JS614 ROK family protein YP_921878.1 705814 D 196162 CDS YP_921879.1 119714914 4599529 707010..708410 1 NC_008699.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 708410 4599529 Noca_0666 Nocardioides sp. JS614 amidase YP_921879.1 707010 D 196162 CDS YP_921880.1 119714915 4599530 complement(708400..709230) 1 NC_008699.1 KEGG: nfa:nfa53170 hypothetical protein; hypothetical protein 709230 4599530 Noca_0667 Nocardioides sp. JS614 hypothetical protein YP_921880.1 708400 R 196162 CDS YP_921881.1 119714916 4599533 709509..709679 1 NC_008699.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif; 50S ribosomal protein L33 709679 rpmG 4599533 rpmG Nocardioides sp. JS614 50S ribosomal protein L33 YP_921881.1 709509 D 196162 CDS YP_921882.1 119714917 4599534 complement(709747..710715) 1 NC_008699.1 hypothetical protein 710715 4599534 Noca_0669 Nocardioides sp. JS614 hypothetical protein YP_921882.1 709747 R 196162 CDS YP_921883.1 119714918 4599535 710748..711149 1 NC_008699.1 KEGG: sco:SCO4636 hypothetical protein; hypothetical protein 711149 4599535 Noca_0670 Nocardioides sp. JS614 hypothetical protein YP_921883.1 710748 D 196162 CDS YP_921884.1 119714919 4599536 711146..711529 1 NC_008699.1 PFAM: MaoC domain protein dehydratase; KEGG: sco:SCO4637 hypothetical protein; dehydratase 711529 4599536 Noca_0671 Nocardioides sp. JS614 dehydratase YP_921884.1 711146 D 196162 CDS YP_921885.1 119714920 4599537 711522..712544 1 NC_008699.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 712544 murB 4599537 murB Nocardioides sp. JS614 UDP-N-acetylenolpyruvoylglucosamine reductase YP_921885.1 711522 D 196162 CDS YP_921886.1 119714921 4599538 complement(712565..712987) 1 NC_008699.1 KEGG: nfa:nfa53880 hypothetical protein; hypothetical protein 712987 4599538 Noca_0673 Nocardioides sp. JS614 hypothetical protein YP_921886.1 712565 R 196162 CDS YP_921887.1 119714922 4599539 complement(712984..714015) 1 NC_008699.1 catalyzes the formation of inosine from adenosine; adenosine deaminase 714015 4599539 Noca_0674 Nocardioides sp. JS614 adenosine deaminase YP_921887.1 712984 R 196162 CDS YP_921888.1 119714923 4599540 complement(714031..715389) 1 NC_008699.1 PFAM: aminotransferase, class I and II; KEGG: nfa:nfa2740 hypothetical protein; class I and II aminotransferase 715389 4599540 Noca_0675 Nocardioides sp. JS614 class I and II aminotransferase YP_921888.1 714031 R 196162 CDS YP_921889.1 119714924 4599541 715651..716163 1 NC_008699.1 KEGG: rha:RHA1_ro05298 hypothetical protein; hypothetical protein 716163 4599541 Noca_0676 Nocardioides sp. JS614 hypothetical protein YP_921889.1 715651 D 196162 CDS YP_921890.1 119714925 4599542 complement(716190..717524) 1 NC_008699.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: rde:RD1_2007 hydroxydechloroatrazine ethylaminohydrolase, putative; amidohydrolase 717524 4599542 Noca_0677 Nocardioides sp. JS614 amidohydrolase YP_921890.1 716190 R 196162 CDS YP_921891.1 119714926 4599543 complement(717521..719047) 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bpm:BURPS1710b_A1655 ribose ABC transporter, ATP-binding protein; ABC transporter-like protein 719047 4599543 Noca_0678 Nocardioides sp. JS614 ABC transporter-like protein YP_921891.1 717521 R 196162 CDS YP_921892.1 119714927 4597543 complement(719049..720212) 1 NC_008699.1 KEGG: hso:HS_0765 ABC-type sugar-binding periplasmic protein; sugar ABC transporter periplasmic component-like protein 720212 4597543 Noca_0679 Nocardioides sp. JS614 sugar ABC transporter periplasmic component-like protein YP_921892.1 719049 R 196162 CDS YP_921893.1 119714928 4597544 complement(720263..721294) 1 NC_008699.1 PFAM: inner-membrane translocator; KEGG: rha:RHA1_ro09081 ABC sugar transporter, permease component; inner-membrane translocator 721294 4597544 Noca_0680 Nocardioides sp. JS614 inner-membrane translocator YP_921893.1 720263 R 196162 CDS YP_921894.1 119714929 4597545 complement(721453..722223) 1 NC_008699.1 PFAM: regulatory proteins, IclR; KEGG: mpa:MAP2738c hypothetical protein; regulatory proteins IclR 722223 4597545 Noca_0681 Nocardioides sp. JS614 regulatory proteins IclR YP_921894.1 721453 R 196162 CDS YP_921895.1 119714930 4597547 722695..723969 1 NC_008699.1 PFAM: ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain protein; KEGG: mmc:Mmcs_5458 ring hydroxylating dioxygenase, alpha subunit; Rieske (2Fe-2S) domain-containing protein 723969 4597547 Noca_0683 Nocardioides sp. JS614 Rieske (2Fe-2S) domain-containing protein YP_921895.1 722695 D 196162 CDS YP_921896.1 119714931 4597548 723966..724472 1 NC_008699.1 PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit; KEGG: mmc:Mmcs_1690 aromatic-ring-hydroxylating dioxygenase, beta subunit; aromatic-ring-hydroxylating dioxygenase subunit beta 724472 4597548 Noca_0684 Nocardioides sp. JS614 aromatic-ring-hydroxylating dioxygenase subunit beta YP_921896.1 723966 D 196162 CDS YP_921897.1 119714932 4597549 724472..724777 1 NC_008699.1 hypothetical protein 724777 4597549 Noca_0685 Nocardioides sp. JS614 hypothetical protein YP_921897.1 724472 D 196162 CDS YP_921898.1 119714933 4597550 724797..726050 1 NC_008699.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sma:SAV1609 ferredoxin reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 726050 4597550 Noca_0686 Nocardioides sp. JS614 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_921898.1 724797 D 196162 CDS YP_921899.1 119714934 4597551 complement(726069..726860) 1 NC_008699.1 PFAM: regulatory proteins, IclR; KEGG: sco:SCO6669 transcriptional regulator; regulatory proteins IclR 726860 4597551 Noca_0687 Nocardioides sp. JS614 regulatory proteins IclR YP_921899.1 726069 R 196162 CDS YP_921900.1 119714935 4597552 complement(726956..727885) 1 NC_008699.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sco:SCO6304 oxidoreductase; glyoxalase/bleomycin resistance protein/dioxygenase 727885 4597552 Noca_0688 Nocardioides sp. JS614 glyoxalase/bleomycin resistance protein/dioxygenase YP_921900.1 726956 R 196162 CDS YP_921901.1 119714936 4597553 728112..728921 1 NC_008699.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dar:Daro_3244 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 728921 4597553 Noca_0689 Nocardioides sp. JS614 short-chain dehydrogenase/reductase SDR YP_921901.1 728112 D 196162 CDS YP_921902.1 119714937 4597554 728993..730015 1 NC_008699.1 KEGG: jan:Jann_1453 dihydrodipicolinate synthetase; dihydrodipicolinate synthase/N-acetylneuraminate lyase 730015 4597554 Noca_0690 Nocardioides sp. JS614 dihydrodipicolinate synthase/N-acetylneuraminate lyase YP_921902.1 728993 D 196162 CDS YP_921903.1 119714938 4597555 730012..731031 1 NC_008699.1 PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: reu:Reut_B3761 ornithine cyclodeaminase/mu-crystallin; ornithine cyclodeaminase 731031 4597555 Noca_0691 Nocardioides sp. JS614 ornithine cyclodeaminase YP_921903.1 730012 D 196162 CDS YP_921904.1 119714939 4597556 731028..732461 1 NC_008699.1 PFAM: aldehyde dehydrogenase; KEGG: sme:SMa0260 GabD3 succinate-semialdehyde dehdyrogenase; succinate semialdehyde dehydrogenase 732461 4597556 Noca_0692 Nocardioides sp. JS614 succinate semialdehyde dehydrogenase YP_921904.1 731028 D 196162 CDS YP_921905.1 119714940 4597557 complement(732574..733476) 1 NC_008699.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sco:SCO6309 LysR-family transcriptional regulator; LysR family transcriptional regulator 733476 4597557 Noca_0693 Nocardioides sp. JS614 LysR family transcriptional regulator YP_921905.1 732574 R 196162 CDS YP_921906.1 119714941 4597559 733819..734064 1 NC_008699.1 TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: sco:SCO4646 preprotein translocase SecE subunit; preprotein translocase subunit SecE 734064 4597559 Noca_0694 Nocardioides sp. JS614 preprotein translocase subunit SecE YP_921906.1 733819 D 196162 CDS YP_921907.1 119714942 4597560 734103..735056 1 NC_008699.1 KEGG: sco:SCO4647 transcription antitermination protein; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG; SMART: NGN domain protein; transcription termination/antitermination factor NusG 735056 4597560 Noca_0695 Nocardioides sp. JS614 transcription termination/antitermination factor NusG YP_921907.1 734103 D 196162 CDS YP_921908.1 119714943 4597561 735181..735609 1 NC_008699.1 PFAM: ribosomal protein L11; KEGG: pac:PPA1890 50S ribosomal protein L11; 50S ribosomal protein L11 735609 4597561 Noca_0696 Nocardioides sp. JS614 50S ribosomal protein L11 YP_921908.1 735181 D 196162 CDS YP_921909.1 119714944 4597562 735634..736413 1 NC_008699.1 PFAM: ribosomal protein L1; KEGG: sco:SCO4649 50S ribosomal protein L1; 50S ribosomal protein L1P 736413 4597562 Noca_0697 Nocardioides sp. JS614 50S ribosomal protein L1P YP_921909.1 735634 D 196162 CDS YP_921910.1 119714945 4597563 736854..737540 1 NC_008699.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 737540 rplJ 4597563 rplJ Nocardioides sp. JS614 50S ribosomal protein L10 YP_921910.1 736854 D 196162 CDS YP_921911.1 119714946 4597564 737618..738013 1 NC_008699.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 738013 rplL 4597564 rplL Nocardioides sp. JS614 50S ribosomal protein L7/L12 YP_921911.1 737618 D 196162 CDS YP_921912.1 119714947 4599804 738218..739219 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rha:RHA1_ro02744 ABC superfamily, ATP-binding component; ABC transporter-like protein 739219 4599804 Noca_0700 Nocardioides sp. JS614 ABC transporter-like protein YP_921912.1 738218 D 196162 CDS YP_921913.1 119714948 4599805 739227..740012 1 NC_008699.1 PFAM: protein of unknown function DUF140; KEGG: sma:SAV5901 putative ABC-transporter integral membrane protein; hypothetical protein 740012 4599805 Noca_0701 Nocardioides sp. JS614 hypothetical protein YP_921913.1 739227 D 196162 CDS YP_921914.1 119714949 4599806 740019..740846 1 NC_008699.1 PFAM: protein of unknown function DUF140; KEGG: sma:SAV5900 hypothetical protein; hypothetical protein 740846 4599806 Noca_0702 Nocardioides sp. JS614 hypothetical protein YP_921914.1 740019 D 196162 CDS YP_921915.1 119714950 4599807 740851..742128 1 NC_008699.1 TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5899 mce-related protein; virulence factor Mce family protein 742128 4599807 Noca_0703 Nocardioides sp. JS614 virulence factor Mce family protein YP_921915.1 740851 D 196162 CDS YP_921916.1 119714951 4599808 742125..743171 1 NC_008699.1 TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5898 putative secreted protein; virulence factor Mce family protein 743171 4599808 Noca_0704 Nocardioides sp. JS614 virulence factor Mce family protein YP_921916.1 742125 D 196162 CDS YP_921917.1 119714952 4599809 743363..744328 1 NC_008699.1 TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5897 putative secreted protein; virulence factor Mce family protein 744328 4599809 Noca_0705 Nocardioides sp. JS614 virulence factor Mce family protein YP_921917.1 743363 D 196162 CDS YP_921918.1 119714953 4599810 744330..745469 1 NC_008699.1 TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5896 mce-related protein; virulence factor Mce family protein 745469 4599810 Noca_0706 Nocardioides sp. JS614 virulence factor Mce family protein YP_921918.1 744330 D 196162 CDS YP_921919.1 119714954 4599811 745466..746884 1 NC_008699.1 TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5895 putative secreted protein; virulence factor Mce family protein 746884 4599811 Noca_0707 Nocardioides sp. JS614 virulence factor Mce family protein YP_921919.1 745466 D 196162 CDS YP_921920.1 119714955 4599812 746881..748155 1 NC_008699.1 TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5894 putative secreted protein; virulence factor Mce family protein 748155 4599812 Noca_0708 Nocardioides sp. JS614 virulence factor Mce family protein YP_921920.1 746881 D 196162 CDS YP_921921.1 119714956 4599813 748152..748733 1 NC_008699.1 KEGG: mmc:Mmcs_0159 putative conserved transmembrane protein; hypothetical protein 748733 4599813 Noca_0709 Nocardioides sp. JS614 hypothetical protein YP_921921.1 748152 D 196162 CDS YP_921922.1 119714957 4599814 748730..749542 1 NC_008699.1 PFAM: heat shock protein DnaJ domain protein; KEGG: rha:RHA1_ro02745 hypothetical protein; heat shock protein DnaJ domain-containing protein 749542 4599814 Noca_0710 Nocardioides sp. JS614 heat shock protein DnaJ domain-containing protein YP_921922.1 748730 D 196162 CDS YP_921923.1 119714958 4599815 749765..753265 1 NC_008699.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 753265 rpoB 4599815 rpoB Nocardioides sp. JS614 DNA-directed RNA polymerase subunit beta YP_921923.1 749765 D 196162 CDS YP_921924.1 119714959 4599816 753385..757257 1 NC_008699.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 757257 4599816 Noca_0712 Nocardioides sp. JS614 DNA-directed RNA polymerase subunit beta' YP_921924.1 753385 D 196162 CDS YP_921925.1 119714960 4599817 757478..757981 1 NC_008699.1 KEGG: rha:RHA1_ro01772 hypothetical protein; hypothetical protein 757981 4599817 Noca_0713 Nocardioides sp. JS614 hypothetical protein YP_921925.1 757478 D 196162 CDS YP_921926.1 119714961 4599818 758037..759284 1 NC_008699.1 TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase; KEGG: rha:RHA1_ro01992 possible dehydrogenase; geranylgeranyl reductase 759284 4599818 Noca_0714 Nocardioides sp. JS614 geranylgeranyl reductase YP_921926.1 758037 D 196162 CDS YP_921927.1 119714962 4599819 759292..760191 1 NC_008699.1 PFAM: NUDIX hydrolase; KEGG: pac:PPA0550 hypothetical protein; NUDIX hydrolase 760191 4599819 Noca_0715 Nocardioides sp. JS614 NUDIX hydrolase YP_921927.1 759292 D 196162 CDS YP_921928.1 119714963 4599820 complement(760154..761194) 1 NC_008699.1 hypothetical protein 761194 4599820 Noca_0716 Nocardioides sp. JS614 hypothetical protein YP_921928.1 760154 R 196162 CDS YP_921929.1 119714964 4599821 complement(761191..762633) 1 NC_008699.1 KEGG: gvi:glr0014 phosphate ABC transporter periplasmic phosphate-binding protein; phosphate ABC transporter periplasmic component-like protein 762633 4599821 Noca_0717 Nocardioides sp. JS614 phosphate ABC transporter periplasmic component-like protein YP_921929.1 761191 R 196162 CDS YP_921930.1 119714965 4599822 complement(762630..763793) 1 NC_008699.1 KEGG: hne:HNE_2670 putative lipoprotein; hypothetical protein 763793 4599822 Noca_0718 Nocardioides sp. JS614 hypothetical protein YP_921930.1 762630 R 196162 CDS YP_921931.1 119714966 4599823 complement(763795..764775) 1 NC_008699.1 KEGG: sma:SAV4404 hypothetical protein; hypothetical protein 764775 4599823 Noca_0719 Nocardioides sp. JS614 hypothetical protein YP_921931.1 763795 R 196162 CDS YP_921932.1 119714967 4599824 complement(764772..766433) 1 NC_008699.1 KEGG: mmc:Mmcs_0533 hypothetical protein; hypothetical protein 766433 4599824 Noca_0720 Nocardioides sp. JS614 hypothetical protein YP_921932.1 764772 R 196162 CDS YP_921933.1 119714968 4599825 complement(766438..768258) 1 NC_008699.1 PFAM: glycosyl transferase, family 2; General secretory system II, protein E domain protein; KEGG: ttj:TTHA0743 glycosyltransferase related protein; general secretion pathway protein E 768258 4599825 Noca_0721 Nocardioides sp. JS614 general secretion pathway protein E YP_921933.1 766438 R 196162 CDS YP_921934.1 119714969 4599826 complement(768573..768866) 1 NC_008699.1 hypothetical protein 768866 4599826 Noca_0722 Nocardioides sp. JS614 hypothetical protein YP_921934.1 768573 R 196162 CDS YP_921935.1 119714970 4599827 complement(769096..770184) 1 NC_008699.1 PFAM: glycoside hydrolase, family 5; KEGG: sma:SAV1854 endo-1,4-beta-glucanase; glycoside hydrolase family protein 770184 4599827 Noca_0723 Nocardioides sp. JS614 glycoside hydrolase family protein YP_921935.1 769096 R 196162 CDS YP_921936.1 119714971 4599828 770344..771600 1 NC_008699.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: rxy:Rxyl_2381 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 771600 4599828 Noca_0724 Nocardioides sp. JS614 iron-containing alcohol dehydrogenase YP_921936.1 770344 D 196162 CDS YP_921937.1 119714972 4599829 771602..774322 1 NC_008699.1 PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; FAD linked oxidase domain protein; KEGG: rha:RHA1_ro00345 possible oxidoreductase, N-termminal; FAD linked oxidase domain-containing protein 774322 4599829 Noca_0725 Nocardioides sp. JS614 FAD linked oxidase domain-containing protein YP_921937.1 771602 D 196162 CDS YP_921938.1 119714973 4599830 774402..775625 1 NC_008699.1 KEGG: pen:PSEEN4336 hypothetical protein; hypothetical protein 775625 4599830 Noca_0726 Nocardioides sp. JS614 hypothetical protein YP_921938.1 774402 D 196162 CDS YP_921939.1 119714974 4599831 775625..776599 1 NC_008699.1 KEGG: tfu:Tfu_0244 hypothetical protein; hypothetical protein 776599 4599831 Noca_0727 Nocardioides sp. JS614 hypothetical protein YP_921939.1 775625 D 196162 CDS YP_921940.1 119714975 4599832 776583..777587 1 NC_008699.1 KEGG: mmc:Mmcs_1279 hypothetical protein; hypothetical protein 777587 4599832 Noca_0728 Nocardioides sp. JS614 hypothetical protein YP_921940.1 776583 D 196162 CDS YP_921941.1 119714976 4599833 777674..778264 1 NC_008699.1 PFAM: Appr-1-p processing domain protein; KEGG: nfa:nfa36990 hypothetical protein; appr-1-p processing domain-containing protein 778264 4599833 Noca_0729 Nocardioides sp. JS614 appr-1-p processing domain-containing protein YP_921941.1 777674 D 196162 CDS YP_921942.1 119714977 4599834 complement(778281..779405) 1 NC_008699.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; phosphoserine aminotransferase 779405 4599834 Noca_0730 Nocardioides sp. JS614 phosphoserine aminotransferase YP_921942.1 778281 R 196162 CDS YP_921943.1 119714978 4599835 779710..780204 1 NC_008699.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sma:SAV3627 acetyltransferase; N-acetyltransferase GCN5 780204 4599835 Noca_0731 Nocardioides sp. JS614 N-acetyltransferase GCN5 YP_921943.1 779710 D 196162 CDS YP_921944.1 119714979 4599836 780264..780821 1 NC_008699.1 hypothetical protein 780821 4599836 Noca_0732 Nocardioides sp. JS614 hypothetical protein YP_921944.1 780264 D 196162 CDS YP_921945.1 119714980 4599618 complement(780896..782002) 1 NC_008699.1 forms citrate from oxaloacetate and acetyl-CoA; functions in TCA cycle; citrate synthase 2 782002 4599618 Noca_0733 Nocardioides sp. JS614 citrate synthase 2 YP_921945.1 780896 R 196162 CDS YP_921946.1 119714981 4599619 782076..782717 1 NC_008699.1 KEGG: sma:SAV3858 putative pyridoxamine 5'-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase 782717 4599619 Noca_0734 Nocardioides sp. JS614 pyridoxamine 5'-phosphate oxidase YP_921946.1 782076 D 196162 CDS YP_921947.1 119714982 4599620 782803..783417 1 NC_008699.1 PFAM: regulatory protein, TetR; KEGG: mmc:Mmcs_2550 transcriptional regulator, TetR family; regulatory protein TetR 783417 4599620 Noca_0735 Nocardioides sp. JS614 regulatory protein TetR YP_921947.1 782803 D 196162 CDS YP_921948.1 119714983 4599621 783417..785153 1 NC_008699.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: fal:FRAAL0788 putative ABC phosphate-transporting ATPase; ABC transporter-like protein 785153 4599621 Noca_0736 Nocardioides sp. JS614 ABC transporter-like protein YP_921948.1 783417 D 196162 CDS YP_921949.1 119714984 4599622 785150..787108 1 NC_008699.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: rha:RHA1_ro04170 bifunctional ABC lipid A exporter; ABC transporter-like protein 787108 4599622 Noca_0737 Nocardioides sp. JS614 ABC transporter-like protein YP_921949.1 785150 D 196162 CDS YP_921950.1 119714985 4599623 complement(787505..787801) 1 NC_008699.1 hypothetical protein 787801 4599623 Noca_0738 Nocardioides sp. JS614 hypothetical protein YP_921950.1 787505 R 196162 CDS YP_921951.1 119714986 4599624 complement(787798..789843) 1 NC_008699.1 TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: dsy:DSY2974 hypothetical protein; flagellar biosynthesis protein FlhA 789843 4599624 Noca_0739 Nocardioides sp. JS614 flagellar biosynthesis protein FlhA YP_921951.1 787798 R 196162 CDS YP_921952.1 119714987 4599625 complement(789926..791071) 1 NC_008699.1 PFAM: type III secretion exporter; KEGG: plu:plu1895 flagellar biosynthetic protein FlhB; type III secretion exporter 791071 4599625 Noca_0740 Nocardioides sp. JS614 type III secretion exporter YP_921952.1 789926 R 196162 CDS YP_921953.1 119714988 4599626 complement(791079..791840) 1 NC_008699.1 TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: tbd:Tbd_1612 flagellar biosynthesis protein FliR; flagellar biosynthetic protein FliR 791840 4599626 Noca_0741 Nocardioides sp. JS614 flagellar biosynthetic protein FliR YP_921953.1 791079 R 196162 CDS YP_921954.1 119714989 4599627 complement(791849..792118) 1 NC_008699.1 PFAM: export protein FliQ, family 3; KEGG: mta:Moth_0787 flagellar biosynthetic protein FliQ; export protein FliQ 792118 4599627 Noca_0742 Nocardioides sp. JS614 export protein FliQ YP_921954.1 791849 R 196162 CDS YP_921955.1 119714990 4599628 complement(792128..792928) 1 NC_008699.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 792928 fliP 4599628 fliP Nocardioides sp. JS614 flagellar biosynthesis protein FliP YP_921955.1 792128 R 196162 CDS YP_921956.1 119714991 4599629 complement(792925..793338) 1 NC_008699.1 hypothetical protein 793338 4599629 Noca_0744 Nocardioides sp. JS614 hypothetical protein YP_921956.1 792925 R 196162 CDS YP_921957.1 119714992 4599630 complement(793340..794080) 1 NC_008699.1 TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: tma:TM0680a chemotaxis protein; flagellar motor switch protein FliN 794080 4599630 Noca_0745 Nocardioides sp. JS614 flagellar motor switch protein FliN YP_921957.1 793340 R 196162 CDS YP_921958.1 119714993 4599631 complement(794077..795084) 1 NC_008699.1 PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: tde:TDE2763 flagellar motor switch protein FliM; flagellar motor switch protein FliM 795084 4599631 Noca_0746 Nocardioides sp. JS614 flagellar motor switch protein FliM YP_921958.1 794077 R 196162 CDS YP_921959.1 119714994 4599632 complement(795183..795647) 1 NC_008699.1 PFAM: flagellar basal body-associated protein FliL; KEGG: tbd:Tbd_1606 probable flagellar transmembrane protein FliL; flagellar basal body-associated protein FliL 795647 4599632 Noca_0747 Nocardioides sp. JS614 flagellar basal body-associated protein FliL YP_921959.1 795183 R 196162 CDS YP_921960.1 119714995 4599633 complement(795644..796552) 1 NC_008699.1 PFAM: OmpA/MotB domain protein; KEGG: chy:CHY_0964 flagellar motor protein MotB; OmpA/MotB domain-containing protein 796552 4599633 Noca_0748 Nocardioides sp. JS614 OmpA/MotB domain-containing protein YP_921960.1 795644 R 196162 CDS YP_921961.1 119714996 4599634 complement(796552..797319) 1 NC_008699.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dsy:DSY3032 hypothetical protein; MotA/TolQ/ExbB proton channel 797319 4599634 Noca_0749 Nocardioides sp. JS614 MotA/TolQ/ExbB proton channel YP_921961.1 796552 R 196162 CDS YP_921962.1 119714997 4599635 complement(797319..797609) 1 NC_008699.1 PFAM: flagellar FlbD family protein; KEGG: lxx:Lxx06430 motility protein; flagellar FlbD family protein 797609 4599635 Noca_0750 Nocardioides sp. JS614 flagellar FlbD family protein YP_921962.1 797319 R 196162 CDS YP_921963.1 119714998 4599636 complement(797716..798564) 1 NC_008699.1 PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: bha:BH2449 flagellar hook protein; hypothetical protein 798564 4599636 Noca_0751 Nocardioides sp. JS614 hypothetical protein YP_921963.1 797716 R 196162 CDS YP_921964.1 119714999 4599637 complement(798592..799083) 1 NC_008699.1 PFAM: flagellar hook capping protein; KEGG: bja:bll6853 hook formation protein; flagellar hook capping protein 799083 4599637 Noca_0752 Nocardioides sp. JS614 flagellar hook capping protein YP_921964.1 798592 R 196162 CDS YP_921965.1 119715000 4599638 complement(799094..800419) 1 NC_008699.1 PFAM: flagellar hook-length control protein; KEGG: lma:LmjF35.0290 hypothetical protein, conserved; flagellar hook-length control protein 800419 4599638 Noca_0753 Nocardioides sp. JS614 flagellar hook-length control protein YP_921965.1 799094 R 196162 CDS YP_921966.1 119715001 4599639 complement(800416..801291) 1 NC_008699.1 PFAM: NLP/P60 protein; Lytic transglycosylase, catalytic; KEGG: chy:CHY_0404 transglycosylase; lytic transglycosylase catalytic subunit 801291 4599639 Noca_0754 Nocardioides sp. JS614 lytic transglycosylase catalytic subunit YP_921966.1 800416 R 196162 CDS YP_921967.1 119715002 4599640 complement(801396..801848) 1 NC_008699.1 hypothetical protein 801848 4599640 Noca_0755 Nocardioides sp. JS614 hypothetical protein YP_921967.1 801396 R 196162 CDS YP_921968.1 119715003 4599641 complement(801845..803152) 1 NC_008699.1 KEGG: lxx:Lxx06360 flagellum-like ATP synthase; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; SMART: AAA ATPase; FliI/YscN family ATPase 803152 4599641 Noca_0756 Nocardioides sp. JS614 FliI/YscN family ATPase YP_921968.1 801845 R 196162 CDS YP_921969.1 119715004 4599642 complement(803294..803968) 1 NC_008699.1 KEGG: lxx:Lxx06350 hypothetical protein; hypothetical protein 803968 4599642 Noca_0757 Nocardioides sp. JS614 hypothetical protein YP_921969.1 803294 R 196162 CDS YP_921970.1 119715005 4599643 complement(803952..804977) 1 NC_008699.1 PFAM: flagellar motor switch protein FliG; KEGG: gka:GK1220 flagellar motor switch protein; flagellar motor switch protein FliG 804977 4599643 Noca_0758 Nocardioides sp. JS614 flagellar motor switch protein FliG YP_921970.1 803952 R 196162 CDS YP_921971.1 119715006 4599644 complement(804977..806572) 1 NC_008699.1 TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring C-terminal domain protein; KEGG: lxx:Lxx06320 flagellar M-ring protein; flagellar M-ring protein FliF 806572 4599644 Noca_0759 Nocardioides sp. JS614 flagellar M-ring protein FliF YP_921971.1 804977 R 196162 CDS YP_921972.1 119715007 4599645 complement(806580..806897) 1 NC_008699.1 TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: lxx:Lxx06330 flagellar basal-body protein; flagellar hook-basal body complex subunit FliE 806897 4599645 Noca_0760 Nocardioides sp. JS614 flagellar hook-basal body complex subunit FliE YP_921972.1 806580 R 196162 CDS YP_921973.1 119715008 4599646 complement(806897..807289) 1 NC_008699.1 KEGG: lxx:Lxx06310 flagellar basal-body rod protein; flagellar basal-body rod protein 807289 4599646 Noca_0761 Nocardioides sp. JS614 flagellar basal-body rod protein YP_921973.1 806897 R 196162 CDS YP_921974.1 119715009 4599647 complement(807289..807645) 1 NC_008699.1 TIGRFAM: flagellar basal-body rod protein FlgB; KEGG: sth:STH3006 flagella basal body rod protein; flagellar basal-body rod protein FlgB 807645 4599647 Noca_0762 Nocardioides sp. JS614 flagellar basal-body rod protein FlgB YP_921974.1 807289 R 196162 CDS YP_921975.1 119715010 4599648 complement(807830..808195) 1 NC_008699.1 hypothetical protein 808195 4599648 Noca_0763 Nocardioides sp. JS614 hypothetical protein YP_921975.1 807830 R 196162 CDS YP_921976.1 119715011 4599649 complement(808206..808595) 1 NC_008699.1 PFAM: flagellar protein FliS; KEGG: lxx:Lxx06280 flagellar-like protein; flagellar protein FliS 808595 4599649 Noca_0764 Nocardioides sp. JS614 flagellar protein FliS YP_921976.1 808206 R 196162 CDS YP_921977.1 119715012 4599650 complement(808613..809944) 1 NC_008699.1 PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: gme:Gmet_0444 flagellar hook-associated protein 2-like; flagellar hook-associated 2 domain-containing protein 809944 4599650 Noca_0765 Nocardioides sp. JS614 flagellar hook-associated 2 domain-containing protein YP_921977.1 808613 R 196162 CDS YP_921978.1 119715013 4599651 complement(810073..811203) 1 NC_008699.1 PFAM: flagellin domain protein; KEGG: mta:Moth_0760 flagellin-like; flagellin domain-containing protein 811203 4599651 Noca_0766 Nocardioides sp. JS614 flagellin domain-containing protein YP_921978.1 810073 R 196162 CDS YP_921979.1 119715014 4599652 complement(811368..812225) 1 NC_008699.1 TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: xac:XAC1933 RNA polymerase sigma factor for flagellar operon FliA; FliA/WhiG family RNA polymerase sigma factor 812225 4599652 Noca_0767 Nocardioides sp. JS614 FliA/WhiG family RNA polymerase sigma factor YP_921979.1 811368 R 196162 CDS YP_921980.1 119715015 4599653 812411..812932 1 NC_008699.1 hypothetical protein 812932 4599653 Noca_0768 Nocardioides sp. JS614 hypothetical protein YP_921980.1 812411 D 196162 CDS YP_921981.1 119715016 4598849 812934..814334 1 NC_008699.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: mta:Moth_0746 flagellar hook-associated protein; flagellar hook-associated protein FlgK 814334 4598849 Noca_0769 Nocardioides sp. JS614 flagellar hook-associated protein FlgK YP_921981.1 812934 D 196162 CDS YP_921982.1 119715017 4598850 814334..815251 1 NC_008699.1 TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: mta:Moth_0747 flagellin-like; flagellar hook-associated protein 3 815251 4598850 Noca_0770 Nocardioides sp. JS614 flagellar hook-associated protein 3 YP_921982.1 814334 D 196162 CDS YP_921983.1 119715018 4598851 815266..815673 1 NC_008699.1 PFAM: protein of unknown function DUF180; KEGG: sth:STH122 hypothetical protein; hypothetical protein 815673 4598851 Noca_0771 Nocardioides sp. JS614 hypothetical protein YP_921983.1 815266 D 196162 CDS YP_921984.1 119715019 4598852 815723..815974 1 NC_008699.1 PFAM: carbon storage regulator; KEGG: bld:BLi03781 carbon storage regulator; RBL05035; carbon storage regulator 815974 4598852 Noca_0772 Nocardioides sp. JS614 carbon storage regulator YP_921984.1 815723 D 196162 CDS YP_921985.1 119715020 4598853 816194..817750 1 NC_008699.1 PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO0623 membrane transport protein; major facilitator transporter 817750 4598853 Noca_0773 Nocardioides sp. JS614 major facilitator transporter YP_921985.1 816194 D 196162 CDS YP_921986.1 119715021 4598854 817767..818234 1 NC_008699.1 PFAM: regulatory protein, MarR; KEGG: sco:SCO5287 MarR-family transcriptional regulator; regulatory protein MarR 818234 4598854 Noca_0774 Nocardioides sp. JS614 regulatory protein MarR YP_921986.1 817767 D 196162 CDS YP_921987.1 119715022 4598855 complement(818332..819936) 1 NC_008699.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: tfu:Tfu_0833 alpha amylase, catalytic subdomain; alpha amylase 819936 4598855 Noca_0775 Nocardioides sp. JS614 alpha amylase YP_921987.1 818332 R 196162 CDS YP_921988.1 119715023 4598856 complement(819959..820690) 1 NC_008699.1 KEGG: tfu:Tfu_1381 hypothetical protein; hypothetical protein 820690 4598856 Noca_0776 Nocardioides sp. JS614 hypothetical protein YP_921988.1 819959 R 196162 CDS YP_921989.1 119715024 4598857 820922..822247 1 NC_008699.1 KEGG: rru:Rru_A1285 WD-40 repeat; hypothetical protein 822247 4598857 Noca_0777 Nocardioides sp. JS614 hypothetical protein YP_921989.1 820922 D 196162 CDS YP_921990.1 119715025 4598858 complement(822258..823619) 1 NC_008699.1 PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein; KEGG: fal:FRAAL0101 deoxyribodipyrimidine photolyase (DNA photolyase) (photoreactivating enzyme); deoxyribodipyrimidine photo-lyase type I 823619 4598858 Noca_0778 Nocardioides sp. JS614 deoxyribodipyrimidine photo-lyase type I YP_921990.1 822258 R 196162 CDS YP_921991.1 119715026 4598859 823667..824353 1 NC_008699.1 PFAM: iron dependent repressor; KEGG: sma:SAV3855 putative iron dependent regulatory protein; iron dependent repressor 824353 4598859 Noca_0779 Nocardioides sp. JS614 iron dependent repressor YP_921991.1 823667 D 196162 CDS YP_921992.1 119715027 4598860 824524..824859 1 NC_008699.1 hypothetical protein 824859 4598860 Noca_0780 Nocardioides sp. JS614 hypothetical protein YP_921992.1 824524 D 196162 CDS YP_921993.1 119715028 4598861 complement(824884..825714) 1 NC_008699.1 PFAM: Silent information regulator protein Sir2; KEGG: nfa:nfa43380 putative Sir2 family regulator; silent information regulator protein Sir2 825714 4598861 Noca_0781 Nocardioides sp. JS614 silent information regulator protein Sir2 YP_921993.1 824884 R 196162 CDS YP_921994.1 119715029 4598862 complement(825711..825980) 1 NC_008699.1 KEGG: sme:SMa0044 hypothetical protein; hypothetical protein 825980 4598862 Noca_0782 Nocardioides sp. JS614 hypothetical protein YP_921994.1 825711 R 196162 CDS YP_921995.1 119715030 4598863 826035..827201 1 NC_008699.1 PFAM: Saccharopine dehydrogenase; KEGG: sma:SAV1683 hypothetical protein; saccharopine dehydrogenase 827201 4598863 Noca_0783 Nocardioides sp. JS614 saccharopine dehydrogenase YP_921995.1 826035 D 196162 CDS YP_921996.1 119715031 4598865 827499..828701 1 NC_008699.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: sma:SAV2240 transcriptional regulator; cell envelope-related transcriptional attenuator 828701 4598865 Noca_0784 Nocardioides sp. JS614 cell envelope-related transcriptional attenuator YP_921996.1 827499 D 196162 CDS YP_921997.1 119715032 4598866 complement(828989..829378) 1 NC_008699.1 PFAM: large-conductance mechanosensitive channel; KEGG: pac:PPA0491 large conductance mechanosensitive channel; large-conductance mechanosensitive channel 829378 4598866 Noca_0785 Nocardioides sp. JS614 large-conductance mechanosensitive channel YP_921997.1 828989 R 196162 CDS YP_921998.1 119715033 4598867 complement(829388..830023) 1 NC_008699.1 PFAM: SAF domain; KEGG: rha:RHA1_ro05629 hypothetical protein; SAF domain-containing protein 830023 4598867 Noca_0786 Nocardioides sp. JS614 SAF domain-containing protein YP_921998.1 829388 R 196162 CDS YP_921999.1 119715034 4598868 complement(830100..830381) 1 NC_008699.1 TIGRFAM: putative regulatory protein, FmdB family; KEGG: mmc:Mmcs_4292 putative regulatory protein, FmdB; FmdB family regulatory protein 830381 4598868 Noca_0787 Nocardioides sp. JS614 FmdB family regulatory protein YP_921999.1 830100 R 196162 CDS YP_922000.1 119715035 4598869 830485..833103 1 NC_008699.1 PFAM: peptidase S45, penicillin amidase; KEGG: sco:SCO3184 putative penicillin acylase; penicillin amidase 833103 4598869 Noca_0788 Nocardioides sp. JS614 penicillin amidase YP_922000.1 830485 D 196162 CDS YP_922001.1 119715036 4598870 complement(833135..833719) 1 NC_008699.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: sco:SCO3183 hypothetical protein; 5-formyltetrahydrofolate cyclo-ligase 833719 4598870 Noca_0789 Nocardioides sp. JS614 5-formyltetrahydrofolate cyclo-ligase YP_922001.1 833135 R 196162 CDS YP_922002.1 119715037 4598871 833737..835122 1 NC_008699.1 PFAM: UTP--glucose-1-phosphate uridylyltransferase; KEGG: pac:PPA0489 UTP--glucose-1-phosphate uridylyltransferase; UTP--glucose-1-phosphate uridylyltransferase 835122 4598871 Noca_0790 Nocardioides sp. JS614 UTP--glucose-1-phosphate uridylyltransferase YP_922002.1 833737 D 196162 CDS YP_922003.1 119715038 4598872 835115..836356 1 NC_008699.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: sma:SAV3672 putative molybdopterin biosynthesis protein; molybdopterin molybdochelatase 836356 4598872 Noca_0791 Nocardioides sp. JS614 molybdopterin molybdochelatase YP_922003.1 835115 D 196162 CDS YP_922004.1 119715039 4598873 836359..836850 1 NC_008699.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 836850 moaC 4598873 moaC Nocardioides sp. JS614 molybdenum cofactor biosynthesis protein MoaC YP_922004.1 836359 D 196162 CDS YP_922005.1 119715040 4598874 836847..837323 1 NC_008699.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; KEGG: sco:SCO3179 molybdenum cofactor biosynthesis protein (putative secreted protein); molybdopterin adenylyltransferase 837323 4598874 Noca_0793 Nocardioides sp. JS614 molybdopterin adenylyltransferase YP_922005.1 836847 D 196162 CDS YP_922006.1 119715041 4598875 837326..837919 1 NC_008699.1 PFAM: GCN5-related N-acetyltransferase; KEGG: tfu:Tfu_0377 ribosomal-protein-alanine N-acetyltransferase; N-acetyltransferase GCN5 837919 4598875 Noca_0794 Nocardioides sp. JS614 N-acetyltransferase GCN5 YP_922006.1 837326 D 196162 CDS YP_922007.1 119715042 4598876 837981..838799 1 NC_008699.1 KEGG: sco:SCO3177 hypothetical protein; hypothetical protein 838799 4598876 Noca_0795 Nocardioides sp. JS614 hypothetical protein YP_922007.1 837981 D 196162 CDS YP_922008.1 119715043 4598878 complement(839245..839994) 1 NC_008699.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro02334 possible 3-oxoacyl-[acyl-carrier-protein] reductase; short-chain dehydrogenase/reductase SDR 839994 4598878 Noca_0796 Nocardioides sp. JS614 short-chain dehydrogenase/reductase SDR YP_922008.1 839245 R 196162 CDS YP_922009.1 119715044 4598879 840180..840872 1 NC_008699.1 PFAM: nitroreductase; KEGG: fal:FRAAL2433 putative NADH dehydrogenase (H(2)O(2) forming NADH oxidase) (NADH:oxygen oxidoreductase); nitroreductase 840872 4598879 Noca_0797 Nocardioides sp. JS614 nitroreductase YP_922009.1 840180 D 196162 CDS YP_922010.1 119715045 4598880 840912..842549 1 NC_008699.1 KEGG: sus:Acid_6472 methylmalonyl-CoA mutase, large subunit; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; methylmalonyl-CoA mutase large subunit 842549 4598880 Noca_0798 Nocardioides sp. JS614 methylmalonyl-CoA mutase large subunit YP_922010.1 840912 D 196162 CDS YP_922011.1 119715046 4598881 842525..842971 1 NC_008699.1 PFAM: cobalamin B12-binding domain protein; KEGG: pfu:PF1946 methylmalonyl-CoAmutase, subunit alpha; cobalamin B12-binding domain-containing protein 842971 4598881 Noca_0799 Nocardioides sp. JS614 cobalamin B12-binding domain-containing protein YP_922011.1 842525 D 196162 CDS YP_922012.1 119715047 4598882 842999..844618 1 NC_008699.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rha:RHA1_ro03966 acyl-CoA synthetase; AMP-dependent synthetase and ligase 844618 4598882 Noca_0800 Nocardioides sp. JS614 AMP-dependent synthetase and ligase YP_922012.1 842999 D 196162 CDS YP_922013.1 119715048 4598883 844711..845610 1 NC_008699.1 TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; KEGG: sma:SAV2855 lysine arginine ornithine transport system kinase; LAO/AO transport system ATPase 845610 4598883 Noca_0801 Nocardioides sp. JS614 LAO/AO transport system ATPase YP_922013.1 844711 D 196162 CDS YP_922014.1 119715049 4598884 845636..846433 1 NC_008699.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: fal:FRAAL4766 putative enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase 846433 4598884 Noca_0802 Nocardioides sp. JS614 enoyl-CoA hydratase YP_922014.1 845636 D 196162 CDS YP_922015.1 119715050 4598885 846460..847596 1 NC_008699.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: sma:SAV3834 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 847596 4598885 Noca_0803 Nocardioides sp. JS614 acyl-CoA dehydrogenase domain-containing protein YP_922015.1 846460 D 196162 CDS YP_922016.1 119715051 4598886 847593..848618 1 NC_008699.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: mmc:Mmcs_5189 acyl-CoA dehydrogenase-like protein; acyl-CoA dehydrogenase domain-containing protein 848618 4598886 Noca_0804 Nocardioides sp. JS614 acyl-CoA dehydrogenase domain-containing protein YP_922016.1 847593 D 196162 CDS YP_922017.1 119715052 4598887 848615..849271 1 NC_008699.1 PFAM: nitroreductase; KEGG: fal:FRAAL2433 putative NADH dehydrogenase (H(2)O(2) forming NADH oxidase) (NADH:oxygen oxidoreductase); nitroreductase 849271 4598887 Noca_0805 Nocardioides sp. JS614 nitroreductase YP_922017.1 848615 D 196162 CDS YP_922018.1 119715053 4598888 849369..850565 1 NC_008699.1 KEGG: ret:RHE_PC00149 putative sugar ABC transporter, substrate-binding protein; sugar ABC transporter periplasmic component-like protein 850565 4598888 Noca_0806 Nocardioides sp. JS614 sugar ABC transporter periplasmic component-like protein YP_922018.1 849369 D 196162 CDS YP_922019.1 119715054 4598814 850567..852060 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: atc:AGR_L_2027 ABC transporter protein, ATP binding component; ABC transporter-like protein 852060 4598814 Noca_0807 Nocardioides sp. JS614 ABC transporter-like protein YP_922019.1 850567 D 196162 CDS YP_922020.1 119715055 4598815 852075..853136 1 NC_008699.1 PFAM: inner-membrane translocator; KEGG: rha:RHA1_ro08440 probable monosaccharide-transporting ATPase; inner-membrane translocator 853136 4598815 Noca_0808 Nocardioides sp. JS614 inner-membrane translocator YP_922020.1 852075 D 196162 CDS YP_922021.1 119715056 4598816 complement(853126..853728) 1 NC_008699.1 PFAM: regulatory protein, TetR; KEGG: mlo:mll7734 transcriptional regulator; regulatory protein TetR 853728 4598816 Noca_0809 Nocardioides sp. JS614 regulatory protein TetR YP_922021.1 853126 R 196162 CDS YP_922022.1 119715057 4598817 853787..854713 1 NC_008699.1 PFAM: luciferase family protein; KEGG: rxy:Rxyl_0369 luciferase-like protein; luciferase family protein 854713 4598817 Noca_0810 Nocardioides sp. JS614 luciferase family protein YP_922022.1 853787 D 196162 CDS YP_922023.1 119715058 4598818 complement(854737..855504) 1 NC_008699.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bbr:BB0763 enoyl-CoA hydratase; short chain enoyl-CoA hydratase 855504 4598818 Noca_0811 Nocardioides sp. JS614 short chain enoyl-CoA hydratase YP_922023.1 854737 R 196162 CDS YP_922024.1 119715059 4598819 complement(855501..856640) 1 NC_008699.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bxe:Bxe_C0282 alpha-methylacyl-CoA racemase; L-carnitine dehydratase/bile acid-inducible protein F 856640 4598819 Noca_0812 Nocardioides sp. JS614 L-carnitine dehydratase/bile acid-inducible protein F YP_922024.1 855501 R 196162 CDS YP_922025.1 119715060 4598820 856704..857786 1 NC_008699.1 PFAM: luciferase family protein; KEGG: sma:SAV6641 FMN-dependent monooxygenase; luciferase family protein 857786 4598820 Noca_0813 Nocardioides sp. JS614 luciferase family protein YP_922025.1 856704 D 196162 CDS YP_922026.1 119715061 4598821 857837..860365 1 NC_008699.1 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase; catalyzes radical-mediated transfer of hydroxybenzyl group from 4-hydroxyphenylpyruvate (HPP) to 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione to form 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO); functions in F420 biosynthesis; FO synthase 860365 fbiC 4598821 fbiC Nocardioides sp. JS614 FO synthase YP_922026.1 857837 D 196162 CDS YP_922027.1 119715062 4598822 860362..860979 1 NC_008699.1 KEGG: mbo:Mb3007 conserved hypothetical alanine rich protein; hypothetical protein 860979 4598822 Noca_0815 Nocardioides sp. JS614 hypothetical protein YP_922027.1 860362 D 196162 CDS YP_922028.1 119715063 4598823 860976..861665 1 NC_008699.1 TIGRFAM: NADPH-dependent F420 reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; KEGG: tfu:Tfu_0970 NADPH-dependent F420 reductase; reduced coenzyme F420:NADP oxidoreductase 861665 4598823 Noca_0816 Nocardioides sp. JS614 reduced coenzyme F420:NADP oxidoreductase YP_922028.1 860976 D 196162 CDS YP_922029.1 119715064 4598824 complement(861721..862353) 1 NC_008699.1 PFAM: regulatory protein, TetR; KEGG: nfa:nfa34140 putative transcriptional regulator; TetR family transcriptional regulator 862353 4598824 Noca_0817 Nocardioides sp. JS614 TetR family transcriptional regulator YP_922029.1 861721 R 196162 CDS YP_922030.1 119715065 4598825 862466..863611 1 NC_008699.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rha:RHA1_ro02345 long-chain-acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 863611 4598825 Noca_0818 Nocardioides sp. JS614 acyl-CoA dehydrogenase domain-containing protein YP_922030.1 862466 D 196162 CDS YP_922031.1 119715066 4598827 864420..864641 1 NC_008699.1 KEGG: sma:SAV403 putative pyridine nucleotide transhydrogenase, beta subunit; hypothetical protein 864641 4598827 Noca_0820 Nocardioides sp. JS614 hypothetical protein YP_922031.1 864420 D 196162 CDS YP_922032.1 119715067 4598828 864638..865693 1 NC_008699.1 KEGG: fal:FRAAL3976 putative acyl-CoA dehydrogenase; hypothetical protein 865693 4598828 Noca_0821 Nocardioides sp. JS614 hypothetical protein YP_922032.1 864638 D 196162 CDS YP_922033.1 119715068 4598829 complement(865939..866193) 1 NC_008699.1 hypothetical protein 866193 4598829 Noca_0822 Nocardioides sp. JS614 hypothetical protein YP_922033.1 865939 R 196162 CDS YP_922034.1 119715069 4598831 complement(867678..867911) 1 NC_008699.1 PFAM: protein of unknown function DUF1271; KEGG: mac:MA1680 hypothetical protein; hypothetical protein 867911 4598831 Noca_0824 Nocardioides sp. JS614 hypothetical protein YP_922034.1 867678 R 196162 CDS YP_922035.1 119715070 4598832 complement(867901..868410) 1 NC_008699.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: sma:SAV1546 hypothetical protein; alkylhydroperoxidase 868410 4598832 Noca_0825 Nocardioides sp. JS614 alkylhydroperoxidase YP_922035.1 867901 R 196162 CDS YP_922036.1 119715071 4598833 868911..870242 1 NC_008699.1 PFAM: ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain protein; KEGG: rha:RHA1_ro02842 large subunit of ring-hydroxylating dioxygenase; Rieske (2Fe-2S) domain-containing protein 870242 4598833 Noca_0826 Nocardioides sp. JS614 Rieske (2Fe-2S) domain-containing protein YP_922036.1 868911 D 196162 CDS YP_922037.1 119715072 4598834 870239..870829 1 NC_008699.1 PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit; KEGG: fal:FRAAL3401 putative dioxygenase component, beta subunit; aromatic-ring-hydroxylating dioxygenase subunit beta 870829 4598834 Noca_0827 Nocardioides sp. JS614 aromatic-ring-hydroxylating dioxygenase subunit beta YP_922037.1 870239 D 196162 CDS YP_922038.1 119715073 4598835 870841..871176 1 NC_008699.1 hypothetical protein 871176 4598835 Noca_0828 Nocardioides sp. JS614 hypothetical protein YP_922038.1 870841 D 196162 CDS YP_922039.1 119715074 4598836 871173..871871 1 NC_008699.1 PFAM: glutamine amidotransferase class-I; KEGG: sai:Saci_1154 hypothetical protein; glutamine amidotransferase 871871 4598836 Noca_0829 Nocardioides sp. JS614 glutamine amidotransferase YP_922039.1 871173 D 196162 CDS YP_922040.1 119715075 4598837 871940..873433 1 NC_008699.1 PFAM: glutamine synthetase, catalytic region; KEGG: bja:bll1069 probable glutamine synthetase; L-glutamine synthetase 873433 4598837 Noca_0830 Nocardioides sp. JS614 L-glutamine synthetase YP_922040.1 871940 D 196162 CDS YP_922041.1 119715076 4598838 873482..873802 1 NC_008699.1 PFAM: ferredoxin; KEGG: bmb:BruAb1_1031 ferredoxin, 2Fe-2S; ferredoxin 873802 4598838 Noca_0831 Nocardioides sp. JS614 ferredoxin YP_922041.1 873482 D 196162 CDS YP_922042.1 119715077 4598839 873799..875076 1 NC_008699.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rfr:Rfer_0300 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 875076 4598839 Noca_0832 Nocardioides sp. JS614 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_922042.1 873799 D 196162 CDS YP_922043.1 119715078 4598840 875076..875939 1 NC_008699.1 PFAM: alpha/beta hydrolase fold; KEGG: mmc:Mmcs_1701 4-carboxymuconolactone decarboxylase; alpha/beta hydrolase fold protein 875939 4598840 Noca_0833 Nocardioides sp. JS614 alpha/beta hydrolase fold protein YP_922043.1 875076 D 196162 CDS YP_922044.1 119715079 4598841 875971..876963 1 NC_008699.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: mmc:Mmcs_1374 transcriptional regulator, LysR family; substrate-binding protein LysR 876963 4598841 Noca_0834 Nocardioides sp. JS614 substrate-binding protein LysR YP_922044.1 875971 D 196162 CDS YP_922045.1 119715080 4598842 876960..878063 1 NC_008699.1 PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: nfa:nfa35210 putative muconate cycloisomerase; mandelate racemase/muconate lactonizing protein 878063 4598842 Noca_0835 Nocardioides sp. JS614 mandelate racemase/muconate lactonizing protein YP_922045.1 876960 D 196162 CDS YP_922046.1 119715081 4598843 878140..879003 1 NC_008699.1 TIGRFAM: catechol 1,2-dioxygenase; PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase, N-terminal domain protein; KEGG: mmc:Mmcs_1376 catechol 1,2-dioxygenase; catechol 1,2-dioxygenase 879003 4598843 Noca_0836 Nocardioides sp. JS614 catechol 1,2-dioxygenase YP_922046.1 878140 D 196162 CDS YP_922047.1 119715082 4598844 879003..879290 1 NC_008699.1 PFAM: Muconolactone delta-isomerase; KEGG: nfa:nfa35230 putative muconolactone delta-isomerase; muconolactone delta-isomerase 879290 4598844 Noca_0837 Nocardioides sp. JS614 muconolactone delta-isomerase YP_922047.1 879003 D 196162 CDS YP_922048.1 119715083 4598845 complement(879307..879969) 1 NC_008699.1 KEGG: nha:Nham_3300 hypothetical protein; hypothetical protein 879969 4598845 Noca_0838 Nocardioides sp. JS614 hypothetical protein YP_922048.1 879307 R 196162 CDS YP_922049.1 119715084 4598846 complement(880002..880433) 1 NC_008699.1 PFAM: ferric-uptake regulator; KEGG: nfa:nfa3250 putative ferric uptake regulator; ferric-uptake regulator 880433 4598846 Noca_0839 Nocardioides sp. JS614 ferric-uptake regulator YP_922049.1 880002 R 196162 CDS YP_922050.1 119715085 4598847 complement(880565..881077) 1 NC_008699.1 PFAM: regulatory protein, MarR; KEGG: rha:RHA1_ro08295 transcriptional regulator, MarR family; regulatory protein MarR 881077 4598847 Noca_0840 Nocardioides sp. JS614 regulatory protein MarR YP_922050.1 880565 R 196162 CDS YP_922051.1 119715086 4598848 complement(881077..881817) 1 NC_008699.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: bha:BH3167 transcriptional regulator (GntR family); GntR family transcriptional regulator 881817 4598848 Noca_0841 Nocardioides sp. JS614 GntR family transcriptional regulator YP_922051.1 881077 R 196162 CDS YP_922052.1 119715087 4597901 complement(881864..882100) 1 NC_008699.1 hypothetical protein 882100 4597901 Noca_0842 Nocardioides sp. JS614 hypothetical protein YP_922052.1 881864 R 196162 CDS YP_922053.1 119715088 4597902 complement(882097..882534) 1 NC_008699.1 PFAM: protein of unknown function DUF35; KEGG: bja:bll2959 hypothetical protein; hypothetical protein 882534 4597902 Noca_0843 Nocardioides sp. JS614 hypothetical protein YP_922053.1 882097 R 196162 CDS YP_922054.1 119715089 4597903 complement(882534..883688) 1 NC_008699.1 KEGG: pol:Bpro_5255 thiolase; thiolase 883688 4597903 Noca_0844 Nocardioides sp. JS614 thiolase YP_922054.1 882534 R 196162 CDS YP_922055.1 119715090 4597904 complement(883685..884863) 1 NC_008699.1 PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: mes:Meso_4533 mandelate racemase/muconate lactonizing enzyme-like; mandelate racemase/muconate lactonizing protein 884863 4597904 Noca_0845 Nocardioides sp. JS614 mandelate racemase/muconate lactonizing protein YP_922055.1 883685 R 196162 CDS YP_922056.1 119715091 4597905 complement(884902..886383) 1 NC_008699.1 PFAM: aldehyde dehydrogenase; KEGG: bxe:Bxe_A3599 betaine-aldehyde dehydrogenase; aldehyde dehydrogenase 886383 4597905 Noca_0846 Nocardioides sp. JS614 aldehyde dehydrogenase YP_922056.1 884902 R 196162 CDS YP_922057.1 119715092 4597906 complement(886380..886730) 1 NC_008699.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: hma:rrnAC3415 hypothetical protein; cupin 886730 4597906 Noca_0847 Nocardioides sp. JS614 cupin YP_922057.1 886380 R 196162 CDS YP_922058.1 119715093 4597907 complement(886736..887203) 1 NC_008699.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rha:RHA1_ro00742 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 887203 4597907 Noca_0848 Nocardioides sp. JS614 glyoxalase/bleomycin resistance protein/dioxygenase YP_922058.1 886736 R 196162 CDS YP_922059.1 119715094 4597908 complement(887220..888101) 1 NC_008699.1 PFAM: luciferase family protein; KEGG: rha:RHA1_ro05823 hypothetical protein; luciferase family protein 888101 4597908 Noca_0849 Nocardioides sp. JS614 luciferase family protein YP_922059.1 887220 R 196162 CDS YP_922060.1 119715095 4597909 complement(888103..888909) 1 NC_008699.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: sco:SCO7702 GntR-family transcriptional regulator; GntR family transcriptional regulator 888909 4597909 Noca_0850 Nocardioides sp. JS614 GntR family transcriptional regulator YP_922060.1 888103 R 196162 CDS YP_922061.1 119715096 4597910 889104..890294 1 NC_008699.1 PFAM: Extracellular ligand-binding receptor; KEGG: rxy:Rxyl_0193 extracellular ligand-binding receptor; extracellular ligand-binding receptor 890294 4597910 Noca_0851 Nocardioides sp. JS614 extracellular ligand-binding receptor YP_922061.1 889104 D 196162 CDS YP_922062.1 119715097 4597911 890339..891205 1 NC_008699.1 PFAM: inner-membrane translocator; KEGG: mag:amb2873 branched-chain amino acid ABC-type transport system; inner-membrane translocator 891205 4597911 Noca_0852 Nocardioides sp. JS614 inner-membrane translocator YP_922062.1 890339 D 196162 CDS YP_922063.1 119715098 4597912 891202..892227 1 NC_008699.1 PFAM: inner-membrane translocator; KEGG: rxy:Rxyl_0195 inner-membrane translocator; inner-membrane translocator 892227 4597912 Noca_0853 Nocardioides sp. JS614 inner-membrane translocator YP_922063.1 891202 D 196162 CDS YP_922064.1 119715099 4597913 892224..892976 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bpa:BPP2198 putative ABC transport system, ATP-bidning protein; ABC transporter-like protein 892976 4597913 Noca_0854 Nocardioides sp. JS614 ABC transporter-like protein YP_922064.1 892224 D 196162 CDS YP_922065.1 119715100 4597914 892969..893658 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bbr:BB2905 high-affinity branched-chain amino acid transport, ATP-binding protein; ABC transporter-like protein 893658 4597914 Noca_0855 Nocardioides sp. JS614 ABC transporter-like protein YP_922065.1 892969 D 196162 CDS YP_922066.1 119715101 4597915 893655..894725 1 NC_008699.1 KEGG: afu:AF1066 N5,N10-methylenetetrahydromethanopterin reductase; coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein 894725 4597915 Noca_0856 Nocardioides sp. JS614 coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein YP_922066.1 893655 D 196162 CDS YP_922067.1 119715102 4597916 894722..895423 1 NC_008699.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpb:RPB_0555 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 895423 4597916 Noca_0857 Nocardioides sp. JS614 enoyl-CoA hydratase/isomerase YP_922067.1 894722 D 196162 CDS YP_922068.1 119715103 4597917 895420..896580 1 NC_008699.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: reu:Reut_A1835 acyl-CoA dehydrogenase, C-terminal:acyl-CoA dehydrogenase, central region:acyl-CoA dehydrogenase, N-terminal; acyl-CoA dehydrogenase domain-containing protein 896580 4597917 Noca_0858 Nocardioides sp. JS614 acyl-CoA dehydrogenase domain-containing protein YP_922068.1 895420 D 196162 CDS YP_922069.1 119715104 4597918 896586..897776 1 NC_008699.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rxy:Rxyl_0244 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 897776 4597918 Noca_0859 Nocardioides sp. JS614 L-carnitine dehydratase/bile acid-inducible protein F YP_922069.1 896586 D 196162 CDS YP_922070.1 119715105 4597919 897773..899398 1 NC_008699.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rxy:Rxyl_1704 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 899398 4597919 Noca_0860 Nocardioides sp. JS614 AMP-dependent synthetase and ligase YP_922070.1 897773 D 196162 CDS YP_922071.1 119715106 4597920 899395..900222 1 NC_008699.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: gka:GK2036 3-hydroxybutyryl-CoA dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase 900222 4597920 Noca_0861 Nocardioides sp. JS614 3-hydroxyacyl-CoA dehydrogenase YP_922071.1 899395 D 196162 CDS YP_922072.1 119715107 4597921 900219..900980 1 NC_008699.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rha:RHA1_ro01928 probable enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase 900980 4597921 Noca_0862 Nocardioides sp. JS614 enoyl-CoA hydratase/isomerase YP_922072.1 900219 D 196162 CDS YP_922073.1 119715108 4597922 900977..903535 1 NC_008699.1 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase; catalyzes radical-mediated transfer of hydroxybenzyl group from 4-hydroxyphenylpyruvate (HPP) to 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione to form 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO); functions in F420 biosynthesis; FO synthase 903535 fbiC 4597922 fbiC Nocardioides sp. JS614 FO synthase YP_922073.1 900977 D 196162 CDS YP_922074.1 119715109 4597923 903557..904225 1 NC_008699.1 TIGRFAM: NADPH-dependent F420 reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE, N-terminal domain protein; KEGG: tfu:Tfu_0970 NADPH-dependent F420 reductase; reduced coenzyme F420:NADP oxidoreductase 904225 4597923 Noca_0864 Nocardioides sp. JS614 reduced coenzyme F420:NADP oxidoreductase YP_922074.1 903557 D 196162 CDS YP_922075.1 119715110 4597924 904225..904857 1 NC_008699.1 KEGG: sco:SCO5557a hypothetical protein; hypothetical protein 904857 4597924 Noca_0865 Nocardioides sp. JS614 hypothetical protein YP_922075.1 904225 D 196162 CDS YP_922076.1 119715111 4597925 904854..905501 1 NC_008699.1 PFAM: GTP cyclohydrolase II; KEGG: sma:SAV545 putative GTP cyclohydrolase II; GTP cyclohydrolase II 905501 4597925 Noca_0866 Nocardioides sp. JS614 GTP cyclohydrolase II YP_922076.1 904854 D 196162 CDS YP_922077.1 119715112 4597926 905564..906265 1 NC_008699.1 KEGG: lma:LmjF35.0540 proteophosphoglycan 5; proteophosphoglycan 5 906265 4597926 Noca_0867 Nocardioides sp. JS614 proteophosphoglycan 5 YP_922077.1 905564 D 196162 CDS YP_922078.1 119715113 4599875 complement(906311..907513) 1 NC_008699.1 PFAM: ROK family protein; KEGG: ret:RHE_CH01552 probable transcriptional regulator protein, ROK family; ROK family protein 907513 4599875 Noca_0868 Nocardioides sp. JS614 ROK family protein YP_922078.1 906311 R 196162 CDS YP_922079.1 119715114 4599876 907548..908882 1 NC_008699.1 PFAM: extracellular solute-binding protein, family 1; KEGG: sme:SMb21221 putative sugar uptake ABC transporter periplasmic solute-binding protein precursor; extracellular solute-binding protein 908882 4599876 Noca_0869 Nocardioides sp. JS614 extracellular solute-binding protein YP_922079.1 907548 D 196162 CDS YP_922080.1 119715115 4599877 908885..909814 1 NC_008699.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mxa:MXAN_7294 putative sugar ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 909814 4599877 Noca_0870 Nocardioides sp. JS614 binding-protein-dependent transport system inner membrane protein YP_922080.1 908885 D 196162 CDS YP_922081.1 119715116 4599878 909811..910665 1 NC_008699.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMb21219 putative sugar uptake ABC transporter permease protein; binding-protein-dependent transport systems inner membrane component 910665 4599878 Noca_0871 Nocardioides sp. JS614 binding-protein-dependent transport systems inner membrane component YP_922081.1 909811 D 196162 CDS YP_922082.1 119715117 4599879 910672..911658 1 NC_008699.1 PFAM: sugar isomerase (SIS); KEGG: mes:Meso_3554 sugar isomerase (SIS); sugar isomerase (SIS) 911658 4599879 Noca_0872 Nocardioides sp. JS614 sugar isomerase (SIS) YP_922082.1 910672 D 196162 CDS YP_922083.1 119715118 4599880 911655..912602 1 NC_008699.1 PFAM: PfkB domain protein; KEGG: mlo:mlr3644 carbohydrate kinase; ribokinase-like domain-containing protein 912602 4599880 Noca_0873 Nocardioides sp. JS614 ribokinase-like domain-containing protein YP_922083.1 911655 D 196162 CDS YP_922084.1 119715119 4599881 912634..913074 1 NC_008699.1 PFAM: ferric-uptake regulator; KEGG: rha:RHA1_ro05274 Fe(3+) uptake regulator; ferric-uptake regulator 913074 4599881 Noca_0874 Nocardioides sp. JS614 ferric-uptake regulator YP_922084.1 912634 D 196162 CDS YP_922085.1 119715120 4599882 913103..915385 1 NC_008699.1 KEGG: rha:RHA1_ro05275 catalase; TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; catalase/peroxidase HPI 915385 4599882 Noca_0875 Nocardioides sp. JS614 catalase/peroxidase HPI YP_922085.1 913103 D 196162 CDS YP_922086.1 119715121 4599883 complement(915993..916691) 1 NC_008699.1 KEGG: dra:DR1380 hypothetical protein; hypothetical protein 916691 4599883 Noca_0876 Nocardioides sp. JS614 hypothetical protein YP_922086.1 915993 R 196162 CDS YP_922087.1 119715122 4599884 complement(916823..917095) 1 NC_008699.1 KEGG: fal:FRAAL6695 hypothetical protein; hypothetical protein 917095 4599884 Noca_0877 Nocardioides sp. JS614 hypothetical protein YP_922087.1 916823 R 196162 CDS YP_922088.1 119715123 4599885 complement(917139..917537) 1 NC_008699.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: fal:FRAAL1971 conserved hypothetical protein; putative FMN-binding split barrel domain; pyridoxamine 5'-phosphate oxidase-like protein 917537 4599885 Noca_0878 Nocardioides sp. JS614 pyridoxamine 5'-phosphate oxidase-like protein YP_922088.1 917139 R 196162 CDS YP_922089.1 119715124 4599886 917552..918058 1 NC_008699.1 PFAM: Clp N terminal domain protein; Clp N terminal domain-containing protein 918058 4599886 Noca_0879 Nocardioides sp. JS614 Clp N terminal domain-containing protein YP_922089.1 917552 D 196162 CDS YP_922090.1 119715125 4599887 918100..919143 1 NC_008699.1 PFAM: aldo/keto reductase; KEGG: tfu:Tfu_2293 oxidoreductase; aldo/keto reductase 919143 4599887 Noca_0880 Nocardioides sp. JS614 aldo/keto reductase YP_922090.1 918100 D 196162 CDS YP_922091.1 119715126 4599888 919445..919984 1 NC_008699.1 hypothetical protein 919984 4599888 Noca_0881 Nocardioides sp. JS614 hypothetical protein YP_922091.1 919445 D 196162 CDS YP_922092.1 119715127 4599889 920042..921766 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV1878 ABC transporter ATP-binding protein; ABC transporter-like protein 921766 4599889 Noca_0882 Nocardioides sp. JS614 ABC transporter-like protein YP_922092.1 920042 D 196162 CDS YP_922093.1 119715128 4599890 921763..922023 1 NC_008699.1 hypothetical protein 922023 4599890 Noca_0883 Nocardioides sp. JS614 hypothetical protein YP_922093.1 921763 D 196162 CDS YP_922094.1 119715129 4599891 complement(922326..923579) 1 NC_008699.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: rha:RHA1_ro05624 possible serine protease, C-terminal; peptidase S1 and S6, chymotrypsin/Hap 923579 4599891 Noca_0884 Nocardioides sp. JS614 peptidase S1 and S6, chymotrypsin/Hap YP_922094.1 922326 R 196162 CDS YP_922095.1 119715130 4599892 923694..924941 1 NC_008699.1 PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV7030 transmembrane efflux protein; major facilitator transporter 924941 4599892 Noca_0885 Nocardioides sp. JS614 major facilitator transporter YP_922095.1 923694 D 196162 CDS YP_922096.1 119715131 4599893 925050..927533 1 NC_008699.1 TIGRFAM: conserved repeat domain; PFAM: protein of unknown function DUF11; KEGG: rpd:RPD_3003 outer membrane autotransporter barrel; hypothetical protein 927533 4599893 Noca_0886 Nocardioides sp. JS614 hypothetical protein YP_922096.1 925050 D 196162 CDS YP_922097.1 119715132 4599894 complement(927552..928172) 1 NC_008699.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: eli:ELI_10920 hydrolase, haloacid dehalogenase-like family protein; HAD family hydrolase 928172 4599894 Noca_0887 Nocardioides sp. JS614 HAD family hydrolase YP_922097.1 927552 R 196162 CDS YP_922098.1 119715133 4599895 complement(928401..929744) 1 NC_008699.1 KEGG: rxy:Rxyl_1676 citrate synthase I; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; citrate synthase 929744 4599895 Noca_0888 Nocardioides sp. JS614 citrate synthase YP_922098.1 928401 R 196162 CDS YP_922099.1 119715134 4599896 929942..930385 1 NC_008699.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 930385 rplM 4599896 rplM Nocardioides sp. JS614 50S ribosomal protein L13 YP_922099.1 929942 D 196162 CDS YP_922100.1 119715135 4599897 930421..930921 1 NC_008699.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 930921 rpsI 4599897 rpsI Nocardioides sp. JS614 30S ribosomal protein S9 YP_922100.1 930421 D 196162 CDS YP_922101.1 119715136 4599898 930930..932276 1 NC_008699.1 TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: sma:SAV4959 putative phosphoglucomutase/phosphomannomutase; phosphoglucosamine mutase 932276 4599898 Noca_0891 Nocardioides sp. JS614 phosphoglucosamine mutase YP_922101.1 930930 D 196162 CDS YP_922102.1 119715137 4599899 932286..933194 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO1742 putative ABC-transporter ATP-binding protein; ABC transporter-like protein 933194 4599899 Noca_0892 Nocardioides sp. JS614 ABC transporter-like protein YP_922102.1 932286 D 196162 CDS YP_922103.1 119715138 4599900 933191..933991 1 NC_008699.1 KEGG: rha:RHA1_ro06014 hypothetical protein; hypothetical protein 933991 4599900 Noca_0893 Nocardioides sp. JS614 hypothetical protein YP_922103.1 933191 D 196162 CDS YP_922104.1 119715139 4599901 934127..934765 1 NC_008699.1 hypothetical protein 934765 4599901 Noca_0894 Nocardioides sp. JS614 hypothetical protein YP_922104.1 934127 D 196162 CDS YP_922105.1 119715140 4599902 complement(934760..935749) 1 NC_008699.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 935749 4599902 Noca_0895 Nocardioides sp. JS614 pantothenate kinase YP_922105.1 934760 R 196162 CDS YP_922106.1 119715141 4599903 935791..937635 1 NC_008699.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 937635 4599903 Noca_0896 Nocardioides sp. JS614 glucosamine--fructose-6-phosphate aminotransferase YP_922106.1 935791 D 196162 CDS YP_922107.1 119715142 4599904 937658..938008 1 NC_008699.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 938008 acpS 4599904 acpS Nocardioides sp. JS614 4'-phosphopantetheinyl transferase YP_922107.1 937658 D 196162 CDS YP_922108.1 119715143 4599905 complement(938044..938970) 1 NC_008699.1 KEGG: fra:Francci3_0932 hypothetical protein; hypothetical protein 938970 4599905 Noca_0898 Nocardioides sp. JS614 hypothetical protein YP_922108.1 938044 R 196162 CDS YP_922109.1 119715144 4599906 939105..940484 1 NC_008699.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family N-terminal domain protein; KEGG: sco:SCO4742 hypothetical protein; carbohydrate kinase 940484 4599906 Noca_0899 Nocardioides sp. JS614 carbohydrate kinase YP_922109.1 939105 D 196162 CDS YP_922110.1 119715145 4599582 940501..941637 1 NC_008699.1 KEGG: sco:SCO4745 putative alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase 941637 4599582 Noca_0900 Nocardioides sp. JS614 alanine racemase YP_922110.1 940501 D 196162 CDS YP_922111.1 119715146 4599583 941634..942716 1 NC_008699.1 PFAM: alpha/beta hydrolase fold; KEGG: sma:SAV4968 hydrolase; alpha/beta hydrolase fold protein 942716 4599583 Noca_0901 Nocardioides sp. JS614 alpha/beta hydrolase fold protein YP_922111.1 941634 D 196162 CDS YP_922112.1 119715147 4599584 943196..943642 1 NC_008699.1 PFAM: protein of unknown function UPF0079; KEGG: sma:SAV4969 hypothetical protein; hypothetical protein 943642 4599584 Noca_0902 Nocardioides sp. JS614 hypothetical protein YP_922112.1 943196 D 196162 CDS YP_922113.1 119715148 4599585 943652..944632 1 NC_008699.1 KEGG: rxy:Rxyl_3097 hypothetical protein; hypothetical protein 944632 4599585 Noca_0903 Nocardioides sp. JS614 hypothetical protein YP_922113.1 943652 D 196162 CDS YP_922114.1 119715149 4599586 complement(944622..947294) 1 NC_008699.1 PFAM: glycosyl transferase, group 1; KEGG: sco:SCO2592 transferase; group 1 glycosyl transferase 947294 4599586 Noca_0904 Nocardioides sp. JS614 group 1 glycosyl transferase YP_922114.1 944622 R 196162 CDS YP_922115.1 119715150 4599587 complement(947305..948096) 1 NC_008699.1 hypothetical protein 948096 4599587 Noca_0905 Nocardioides sp. JS614 hypothetical protein YP_922115.1 947305 R 196162 CDS YP_922116.1 119715151 4599588 complement(948194..948763) 1 NC_008699.1 KEGG: sma:SAV2206 hypothetical protein; hypothetical protein 948763 4599588 Noca_0906 Nocardioides sp. JS614 hypothetical protein YP_922116.1 948194 R 196162 CDS YP_922117.1 119715152 4599589 complement(948797..949897) 1 NC_008699.1 catalyzes the ATP-dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; in mycobacteria LigC has weak intrinsic nick joining activities and is not essential for growth; ATP-dependent DNA ligase 949897 ligC 4599589 ligC Nocardioides sp. JS614 ATP-dependent DNA ligase YP_922117.1 948797 R 196162 CDS YP_922118.1 119715153 4599591 950118..951548 1 NC_008699.1 KEGG: cef:CE1016 glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase; TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; glucosamine-1-phosphate N-acetyltransferase/UDP-N-acetylglucosamine pyrophosphorylase 951548 4599591 Noca_0908 Nocardioides sp. JS614 glucosamine-1-phosphate N-acetyltransferase/UDP-N-acetylglucosamine pyrophosphorylase YP_922118.1 950118 D 196162 CDS YP_922119.1 119715154 4599592 951523..952566 1 NC_008699.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 952566 4599592 Noca_0909 Nocardioides sp. JS614 ribose-phosphate pyrophosphokinase YP_922119.1 951523 D 196162 CDS YP_922120.1 119715155 4599593 complement(952577..955000) 1 NC_008699.1 TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: sco:SCO2018 putative aminopeptidase; aminopeptidase N 955000 4599593 Noca_0910 Nocardioides sp. JS614 aminopeptidase N YP_922120.1 952577 R 196162 CDS YP_922121.1 119715156 4599594 955236..955907 1 NC_008699.1 TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal protein L25; KEGG: rha:RHA1_ro05695 50S ribosomal protein L25; 50S ribosomal protein L25 955907 4599594 Noca_0911 Nocardioides sp. JS614 50S ribosomal protein L25 YP_922121.1 955236 D 196162 CDS YP_922122.1 119715157 4599595 955904..956557 1 NC_008699.1 PFAM: peptidyl-tRNA hydrolase; KEGG: sco:SCO3125 peptidyl-tRNA hydrolase; peptidyl-tRNA hydrolase 956557 4599595 Noca_0912 Nocardioides sp. JS614 peptidyl-tRNA hydrolase YP_922122.1 955904 D 196162 CDS YP_922123.1 119715158 4599596 956589..957368 1 NC_008699.1 PFAM: inositol monophosphatase; KEGG: mmc:Mmcs_3917 inositol monophosphatase; inositol monophosphatase 957368 4599596 Noca_0913 Nocardioides sp. JS614 inositol monophosphatase YP_922123.1 956589 D 196162 CDS YP_922124.1 119715159 4599597 957365..957817 1 NC_008699.1 KEGG: sma:SAV3169 hypothetical protein; hypothetical protein 957817 4599597 Noca_0914 Nocardioides sp. JS614 hypothetical protein YP_922124.1 957365 D 196162 CDS YP_922125.1 119715160 4599598 958095..959102 1 NC_008699.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fra:Francci3_4264 phosphate ABC transporter, permease protein PstC; phosphate ABC transporter permease 959102 4599598 Noca_0915 Nocardioides sp. JS614 phosphate ABC transporter permease YP_922125.1 958095 D 196162 CDS YP_922126.1 119715161 4599599 959102..960292 1 NC_008699.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fal:FRAAL6533 phosphate ABC transporter permease protein; phosphate ABC transporter permease 960292 4599599 Noca_0916 Nocardioides sp. JS614 phosphate ABC transporter permease YP_922126.1 959102 D 196162 CDS YP_922127.1 119715162 4599600 960289..961923 1 NC_008699.1 TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; KEGG: fal:FRAAL6535 high-affinity phosphate transport protein (ABC superfamily); phosphate ABC transporter, periplasmic phosphate-binding protein 961923 4599600 Noca_0917 Nocardioides sp. JS614 phosphate ABC transporter, periplasmic phosphate-binding protein YP_922127.1 960289 D 196162 CDS YP_922128.1 119715163 4599601 961920..964475 1 NC_008699.1 hypothetical protein 964475 4599601 Noca_0918 Nocardioides sp. JS614 hypothetical protein YP_922128.1 961920 D 196162 CDS YP_922129.1 119715164 4599602 964472..965458 1 NC_008699.1 PFAM: peptidase C60, sortase A and B; KEGG: fal:FRAAL2033 putative sortase (surface protein transpeptidase); peptidase C60, sortase A and B 965458 4599602 Noca_0919 Nocardioides sp. JS614 peptidase C60, sortase A and B YP_922129.1 964472 D 196162 CDS YP_922130.1 119715165 4599603 965534..967063 1 NC_008699.1 KEGG: cya:CYA_1212 phosphate uptake transporter (PhoT) ABC transporter family, substrate-binding protein; phosphate ABC transporter periplasmic component-like protein 967063 4599603 Noca_0920 Nocardioides sp. JS614 phosphate ABC transporter periplasmic component-like protein YP_922130.1 965534 D 196162 CDS YP_922131.1 119715166 4599604 967179..968009 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cef:CE2464 putative phosphate transport system ATP-binding protein; ABC transporter-like protein 968009 4599604 Noca_0921 Nocardioides sp. JS614 ABC transporter-like protein YP_922131.1 967179 D 196162 CDS YP_922132.1 119715167 4599605 968028..968777 1 NC_008699.1 KEGG: tfu:Tfu_2594 similar to membrane-bound lytic murein transglycosylase B; membrane-bound lytic murein transglycosylase B-like protein 968777 4599605 Noca_0922 Nocardioides sp. JS614 membrane-bound lytic murein transglycosylase B-like protein YP_922132.1 968028 D 196162 CDS YP_922133.1 119715168 4599606 968863..969573 1 NC_008699.1 PFAM: Collagen triple helix repeat; KEGG: hso:HS_1632 conserved hypothetical protein; triple helix repeat-containing collagen 969573 4599606 Noca_0923 Nocardioides sp. JS614 triple helix repeat-containing collagen YP_922133.1 968863 D 196162 CDS YP_922134.1 119715169 4599607 969688..973362 1 NC_008699.1 KEGG: sco:SCO3109 putative transcriptional-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; transcription-repair coupling factor 973362 4599607 Noca_0924 Nocardioides sp. JS614 transcription-repair coupling factor YP_922134.1 969688 D 196162 CDS YP_922135.1 119715170 4599608 973359..974018 1 NC_008699.1 hypothetical protein 974018 4599608 Noca_0925 Nocardioides sp. JS614 hypothetical protein YP_922135.1 973359 D 196162 CDS YP_922136.1 119715171 4599609 974046..974747 1 NC_008699.1 PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: sma:SAV3537 putative MazG-family transcriptional regulator; MazG nucleotide pyrophosphohydrolase 974747 4599609 Noca_0926 Nocardioides sp. JS614 MazG nucleotide pyrophosphohydrolase YP_922136.1 974046 D 196162 CDS YP_922137.1 119715172 4599610 complement(974800..975825) 1 NC_008699.1 KEGG: mpa:MAP3892 hypothetical protein; hypothetical protein 975825 4599610 Noca_0927 Nocardioides sp. JS614 hypothetical protein YP_922137.1 974800 R 196162 CDS YP_922138.1 119715173 4599611 976131..977408 1 NC_008699.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 977408 eno 4599611 eno Nocardioides sp. JS614 phosphopyruvate hydratase YP_922138.1 976131 D 196162 CDS YP_922139.1 119715174 4599612 977424..977978 1 NC_008699.1 PFAM: Septum formation initiator; KEGG: pac:PPA0546 conserved protein, putative septum formation initiator; septum formation initiator 977978 4599612 Noca_0929 Nocardioides sp. JS614 septum formation initiator YP_922139.1 977424 D 196162 CDS YP_922140.1 119715175 4599613 977981..978487 1 NC_008699.1 PFAM: protein of unknown function DUF501; KEGG: sma:SAV3531 hypothetical protein; hypothetical protein 978487 4599613 Noca_0930 Nocardioides sp. JS614 hypothetical protein YP_922140.1 977981 D 196162 CDS YP_922141.1 119715176 4599614 978478..979404 1 NC_008699.1 PFAM: Ppx/GppA phosphatase; KEGG: sco:SCO3093 hydrolase; Ppx/GppA phosphatase 979404 4599614 Noca_0931 Nocardioides sp. JS614 Ppx/GppA phosphatase YP_922141.1 978478 D 196162 CDS YP_922142.1 119715177 4599615 979462..979863 1 NC_008699.1 PFAM: protein of unknown function DUF1469; KEGG: sco:SCO1911 integral membrane protein; hypothetical protein 979863 4599615 Noca_0932 Nocardioides sp. JS614 hypothetical protein YP_922142.1 979462 D 196162 CDS YP_922143.1 119715178 4599616 979860..980108 1 NC_008699.1 KEGG: mmc:Mmcs_2235 hypothetical protein; hypothetical protein 980108 4599616 Noca_0933 Nocardioides sp. JS614 hypothetical protein YP_922143.1 979860 D 196162 CDS YP_922144.1 119715179 4599617 980169..980435 1 NC_008699.1 KEGG: sma:SAV5684 hypothetical protein; hypothetical protein 980435 4599617 Noca_0934 Nocardioides sp. JS614 hypothetical protein YP_922144.1 980169 D 196162 CDS YP_922145.1 119715180 4597467 980491..981345 1 NC_008699.1 PFAM: Uracil-DNA glycosylase superfamily; KEGG: fal:FRAAL6229 uracil-DNA glycosylase; uracil-DNA glycosylase superfamily protein 981345 4597467 Noca_0935 Nocardioides sp. JS614 uracil-DNA glycosylase superfamily protein YP_922145.1 980491 D 196162 CDS YP_922146.1 119715181 4597469 981605..982429 1 NC_008699.1 PFAM: Methyltransferase type 11; KEGG: bte:BTH_I1959 hypothetical protein; type 11 methyltransferase 982429 4597469 Noca_0936 Nocardioides sp. JS614 type 11 methyltransferase YP_922146.1 981605 D 196162 CDS YP_922147.1 119715182 4597470 982796..983680 1 NC_008699.1 PFAM: protein of unknown function DUF1112; KEGG: pac:PPA0549 membrane spanning protein; hypothetical protein 983680 4597470 Noca_0937 Nocardioides sp. JS614 hypothetical protein YP_922147.1 982796 D 196162 CDS YP_922148.1 119715183 4597471 complement(983957..985003) 1 NC_008699.1 PFAM: lipolytic enzyme, G-D-S-L family; KEGG: sma:SAV3511 secreted protein; GDSL family lipase 985003 4597471 Noca_0938 Nocardioides sp. JS614 GDSL family lipase YP_922148.1 983957 R 196162 CDS YP_922149.1 119715184 4597472 985091..986479 1 NC_008699.1 KEGG: rha:RHA1_ro05843 probable cystathionine beta-synthase; TIGRFAM: cystathionine beta-synthase; PFAM: CBS domain containing protein; Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; cystathionine beta-synthase 986479 4597472 Noca_0939 Nocardioides sp. JS614 cystathionine beta-synthase YP_922149.1 985091 D 196162 CDS YP_922150.1 119715185 4597473 986574..987035 1 NC_008699.1 PFAM: protein of unknown function DUF35; KEGG: mbo:Mb1654c hypothetical protein; hypothetical protein 987035 4597473 Noca_0940 Nocardioides sp. JS614 hypothetical protein YP_922150.1 986574 D 196162 CDS YP_922151.1 119715186 4597474 987032..988228 1 NC_008699.1 KEGG: mpa:MAP1320c lipid-transfer protein; lipid-transfer protein 988228 4597474 Noca_0941 Nocardioides sp. JS614 lipid-transfer protein YP_922151.1 987032 D 196162 CDS YP_922152.1 119715187 4597475 988484..989938 1 NC_008699.1 PFAM: cytochrome bd ubiquinol oxidase, subunit I; KEGG: lxx:Lxx12300 cytochrome D ubiquinol oxidase subunit I; cytochrome bd ubiquinol oxidase subunit I 989938 4597475 Noca_0942 Nocardioides sp. JS614 cytochrome bd ubiquinol oxidase subunit I YP_922152.1 988484 D 196162 CDS YP_922153.1 119715188 4597476 989954..990982 1 NC_008699.1 TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; KEGG: sco:SCO3946 putative cytochrome oxidase subunit II; cytochrome d ubiquinol oxidase subunit II 990982 4597476 Noca_0943 Nocardioides sp. JS614 cytochrome d ubiquinol oxidase subunit II YP_922153.1 989954 D 196162 CDS YP_922154.1 119715189 4597477 990990..994235 1 NC_008699.1 KEGG: sco:SCO3947 putative ABC transporter; TIGRFAM: ABC transporter, transmembrane region, type 1; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; ABC transporter transmembrane protein, type 1 994235 4597477 Noca_0944 Nocardioides sp. JS614 ABC transporter transmembrane protein, type 1 YP_922154.1 990990 D 196162 CDS YP_922155.1 119715190 4597478 994232..994882 1 NC_008699.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: fra:Francci3_3253 two component transcriptional regulator, LuxR family; response regulator receiver 994882 4597478 Noca_0945 Nocardioides sp. JS614 response regulator receiver YP_922155.1 994232 D 196162 CDS YP_922156.1 119715191 4597479 complement(994910..996520) 1 NC_008699.1 PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: sco:SCO0203 two-component sensor; GAF domain-containing protein 996520 4597479 Noca_0946 Nocardioides sp. JS614 GAF domain-containing protein YP_922156.1 994910 R 196162 CDS YP_922157.1 119715192 4597480 complement(996517..996981) 1 NC_008699.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: sco:SCO0174 putative DNA-binding protein; pyridoxamine 5'-phosphate oxidase-like protein 996981 4597480 Noca_0947 Nocardioides sp. JS614 pyridoxamine 5'-phosphate oxidase-like protein YP_922157.1 996517 R 196162 CDS YP_922158.1 119715193 4597481 997118..997990 1 NC_008699.1 PFAM: UspA domain protein; KEGG: rha:RHA1_ro04893 universal stress protein; UspA domain-containing protein 997990 4597481 Noca_0948 Nocardioides sp. JS614 UspA domain-containing protein YP_922158.1 997118 D 196162 CDS YP_922159.1 119715194 4597482 997994..998392 1 NC_008699.1 PFAM: CBS domain containing protein; KEGG: pai:PAE3319 conserved protein with 2 CBS domains; hypothetical protein 998392 4597482 Noca_0949 Nocardioides sp. JS614 hypothetical protein YP_922159.1 997994 D 196162 CDS YP_922160.1 119715195 4597483 complement(998389..998754) 1 NC_008699.1 KEGG: mmc:Mmcs_2103 sec-C motif containing protein; SecC motif-containing protein 998754 4597483 Noca_0950 Nocardioides sp. JS614 SecC motif-containing protein YP_922160.1 998389 R 196162 CDS YP_922161.1 119715196 4597484 998921..999970 1 NC_008699.1 PFAM: UspA domain protein; KEGG: cjk:jk0100 putative universal stress protein; UspA domain-containing protein 999970 4597484 Noca_0951 Nocardioides sp. JS614 UspA domain-containing protein YP_922161.1 998921 D 196162 CDS YP_922162.1 119715197 4597485 1000098..1001486 1 NC_008699.1 KEGG: rha:RHA1_ro05589 probable magnesium chelatase subunit ChlI; putative magnesium chelatase subunit ChlI 1001486 4597485 Noca_0952 Nocardioides sp. JS614 putative magnesium chelatase subunit ChlI YP_922162.1 1000098 D 196162 CDS YP_922163.1 119715198 4597486 1001486..1003498 1 NC_008699.1 PFAM: von Willebrand factor, type A; KEGG: rha:RHA1_ro05590 hypothetical protein; von Willebrand factor, type A 1003498 4597486 Noca_0953 Nocardioides sp. JS614 von Willebrand factor, type A YP_922163.1 1001486 D 196162 CDS YP_922164.1 119715199 4597487 complement(1003517..1006012) 1 NC_008699.1 PFAM: glycoside hydrolase, family 31; KEGG: tfu:Tfu_1613 putative alpha-glucosidase; glycoside hydrolase family protein 1006012 4597487 Noca_0954 Nocardioides sp. JS614 glycoside hydrolase family protein YP_922164.1 1003517 R 196162 CDS YP_922165.1 119715200 4597488 complement(1006047..1006445) 1 NC_008699.1 hypothetical protein 1006445 4597488 Noca_0955 Nocardioides sp. JS614 hypothetical protein YP_922165.1 1006047 R 196162 CDS YP_922166.1 119715201 4597489 1006703..1007299 1 NC_008699.1 hypothetical protein 1007299 4597489 Noca_0956 Nocardioides sp. JS614 hypothetical protein YP_922166.1 1006703 D 196162 CDS YP_922167.1 119715202 4597490 complement(1007322..1008170) 1 NC_008699.1 KEGG: rxy:Rxyl_3164 periplasmic binding protein; periplasmic binding protein 1008170 4597490 Noca_0957 Nocardioides sp. JS614 periplasmic binding protein YP_922167.1 1007322 R 196162 CDS YP_922168.1 119715203 4597491 complement(1008253..1008927) 1 NC_008699.1 hypothetical protein 1008927 4597491 Noca_0958 Nocardioides sp. JS614 hypothetical protein YP_922168.1 1008253 R 196162 CDS YP_922169.1 119715204 4597492 1009117..1009896 1 NC_008699.1 PFAM: protein of unknown function DUF81; KEGG: sco:SCO2485 hypothetical protein; hypothetical protein 1009896 4597492 Noca_0959 Nocardioides sp. JS614 hypothetical protein YP_922169.1 1009117 D 196162 CDS YP_922170.1 119715205 4597493 1009890..1010549 1 NC_008699.1 PFAM: protein of unknown function UPF0029; KEGG: rha:RHA1_ro05575 hypothetical protein; hypothetical protein 1010549 4597493 Noca_0960 Nocardioides sp. JS614 hypothetical protein YP_922170.1 1009890 D 196162 CDS YP_922171.1 119715206 4597494 1010546..1010860 1 NC_008699.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: mpa:MAP3938c hypothetical protein; pyridoxamine 5'-phosphate oxidase-like protein 1010860 4597494 Noca_0961 Nocardioides sp. JS614 pyridoxamine 5'-phosphate oxidase-like protein YP_922171.1 1010546 D 196162 CDS YP_922172.1 119715207 4597495 1010857..1011603 1 NC_008699.1 KEGG: sma:SAV3002 hypothetical protein; hypothetical protein 1011603 4597495 Noca_0962 Nocardioides sp. JS614 hypothetical protein YP_922172.1 1010857 D 196162 CDS YP_922173.1 119715208 4597496 complement(1011697..1012083) 1 NC_008699.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sma:SAV785 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 1012083 4597496 Noca_0963 Nocardioides sp. JS614 glyoxalase/bleomycin resistance protein/dioxygenase YP_922173.1 1011697 R 196162 CDS YP_922174.1 119715209 4597497 complement(1012147..1013484) 1 NC_008699.1 PFAM: ABC-1 domain protein; KEGG: sma:SAV3068 ABC transporter ATP-binding protein; hypothetical protein 1013484 4597497 Noca_0964 Nocardioides sp. JS614 hypothetical protein YP_922174.1 1012147 R 196162 CDS YP_922175.1 119715210 4597498 1013579..1015165 1 NC_008699.1 PFAM: FAD dependent oxidoreductase; KEGG: sco:SCO7388 dehydrogenase; FAD dependent oxidoreductase 1015165 4597498 Noca_0965 Nocardioides sp. JS614 FAD dependent oxidoreductase YP_922175.1 1013579 D 196162 CDS YP_922176.1 119715211 4597499 complement(1015173..1015643) 1 NC_008699.1 KEGG: cgb:cg1735 secreted cell wall-associated hydrolase (invasion-associated protein); hypothetical protein 1015643 4597499 Noca_0966 Nocardioides sp. JS614 hypothetical protein YP_922176.1 1015173 R 196162 CDS YP_922177.1 119715212 4597500 complement(1015750..1016076) 1 NC_008699.1 PFAM: PspC domain protein; KEGG: sco:SCO4903 hypothetical protein; PspC domain-containing protein 1016076 4597500 Noca_0967 Nocardioides sp. JS614 PspC domain-containing protein YP_922177.1 1015750 R 196162 CDS YP_922178.1 119715213 4597501 1016240..1017004 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fal:FRAAL1681 putative ABC transporter, ATP-binding protein; ABC transporter-like protein 1017004 4597501 Noca_0968 Nocardioides sp. JS614 ABC transporter-like protein YP_922178.1 1016240 D 196162 CDS YP_922179.1 119715214 4597502 1017010..1019430 1 NC_008699.1 PFAM: protein of unknown function DUF214; KEGG: fal:FRAAL1680 hypothetical protein; putative membrane protein; putative HPr serine phosphorylation domain; hypothetical protein 1019430 4597502 Noca_0969 Nocardioides sp. JS614 hypothetical protein YP_922179.1 1017010 D 196162 CDS YP_922180.1 119715215 4597503 complement(1019458..1019814) 1 NC_008699.1 PFAM: DGPFAETKE family protein; KEGG: rha:RHA1_ro00578 hypothetical protein; DGPFAETKE family protein 1019814 4597503 Noca_0970 Nocardioides sp. JS614 DGPFAETKE family protein YP_922180.1 1019458 R 196162 CDS YP_922181.1 119715216 4597504 1019946..1020578 1 NC_008699.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ret:RHE_CH02466 hypothetical protein; type 12 methyltransferase 1020578 4597504 Noca_0971 Nocardioides sp. JS614 type 12 methyltransferase YP_922181.1 1019946 D 196162 CDS YP_922182.1 119715217 4597505 complement(1020598..1021725) 1 NC_008699.1 PFAM: secretory lipase; KEGG: rha:RHA1_ro01045 hypothetical protein; secretory lipase 1021725 4597505 Noca_0972 Nocardioides sp. JS614 secretory lipase YP_922182.1 1020598 R 196162 CDS YP_922183.1 119715218 4597506 1021857..1022483 1 NC_008699.1 PFAM: regulatory protein, TetR; KEGG: rme:Rmet_5057 transcriptional regulator, TetR family; regulatory protein TetR 1022483 4597506 Noca_0973 Nocardioides sp. JS614 regulatory protein TetR YP_922183.1 1021857 D 196162 CDS YP_922184.1 119715219 4599750 complement(1022550..1023194) 1 NC_008699.1 KEGG: cya:CYA_0467 methionine-S-sulfoxide reductase; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; peptide methionine sulfoxide reductase 1023194 4599750 Noca_0974 Nocardioides sp. JS614 peptide methionine sulfoxide reductase YP_922184.1 1022550 R 196162 CDS YP_922185.1 119715220 4599752 1024210..1025373 1 NC_008699.1 PFAM: aminotransferase, class V; Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: tfu:Tfu_0440 cystathionine gamma-synthase; cystathionine gamma-lyase 1025373 4599752 Noca_0976 Nocardioides sp. JS614 cystathionine gamma-lyase YP_922185.1 1024210 D 196162 CDS YP_922186.1 119715221 4599753 1025396..1026727 1 NC_008699.1 KEGG: dsy:DSY3235 hypothetical protein; hypothetical protein 1026727 4599753 Noca_0977 Nocardioides sp. JS614 hypothetical protein YP_922186.1 1025396 D 196162 CDS YP_922187.1 119715222 4599754 1026737..1028095 1 NC_008699.1 PFAM: protein of unknown function UPF0118; KEGG: lxx:Lxx16910 integral membrane protein; hypothetical protein 1028095 4599754 Noca_0978 Nocardioides sp. JS614 hypothetical protein YP_922187.1 1026737 D 196162 CDS YP_922188.1 119715223 4599755 1028088..1029302 1 NC_008699.1 catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase 1029302 4599755 Noca_0979 Nocardioides sp. JS614 threonine dehydratase YP_922188.1 1028088 D 196162 CDS YP_922189.1 119715224 4599756 complement(1029313..1029816) 1 NC_008699.1 TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: tfu:Tfu_0447 prokaryotic transcription elongation factor GreA; transcription elongation factor GreA 1029816 4599756 Noca_0980 Nocardioides sp. JS614 transcription elongation factor GreA YP_922189.1 1029313 R 196162 CDS YP_922190.1 119715225 4599757 1030444..1031373 1 NC_008699.1 PFAM: LmbE family protein; KEGG: tfu:Tfu_0449 hypothetical protein; LmbE family protein 1031373 4599757 Noca_0981 Nocardioides sp. JS614 LmbE family protein YP_922190.1 1030444 D 196162 CDS YP_922191.1 119715226 4599758 1031414..1031674 1 NC_008699.1 hypothetical protein 1031674 4599758 Noca_0982 Nocardioides sp. JS614 hypothetical protein YP_922191.1 1031414 D 196162 CDS YP_922192.1 119715227 4599759 complement(1031694..1032296) 1 NC_008699.1 PFAM: thiopurine S-methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: fal:FRAAL2901 putative methyltransferase; type 12 methyltransferase 1032296 4599759 Noca_0983 Nocardioides sp. JS614 type 12 methyltransferase YP_922192.1 1031694 R 196162 CDS YP_922193.1 119715228 4599761 complement(1033291..1034013) 1 NC_008699.1 KEGG: rha:RHA1_ro00065 hypothetical protein; hypothetical protein 1034013 4599761 Noca_0985 Nocardioides sp. JS614 hypothetical protein YP_922193.1 1033291 R 196162 CDS YP_922194.1 119715229 4599762 complement(1034213..1034914) 1 NC_008699.1 KEGG: gvi:glr0185 hypothetical protein; hypothetical protein 1034914 4599762 Noca_0986 Nocardioides sp. JS614 hypothetical protein YP_922194.1 1034213 R 196162 CDS YP_922195.1 119715230 4599763 complement(1034970..1037663) 1 NC_008699.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase 1037663 4599763 Noca_0987 Nocardioides sp. JS614 pyruvate phosphate dikinase YP_922195.1 1034970 R 196162 CDS YP_922196.1 119715231 4599764 1037817..1038731 1 NC_008699.1 PFAM: UspA domain protein; KEGG: tfu:Tfu_3032 hypothetical protein; UspA domain-containing protein 1038731 4599764 Noca_0988 Nocardioides sp. JS614 UspA domain-containing protein YP_922196.1 1037817 D 196162 CDS YP_922197.1 119715232 4599765 complement(1038869..1039771) 1 NC_008699.1 PFAM: UspA domain protein; KEGG: rha:RHA1_ro00021 probable universal stress protein; UspA domain-containing protein 1039771 4599765 Noca_0989 Nocardioides sp. JS614 UspA domain-containing protein YP_922197.1 1038869 R 196162 CDS YP_922198.1 119715233 4599766 complement(1039896..1040924) 1 NC_008699.1 KEGG: nfa:nfa28960 hypothetical protein; hypothetical protein 1040924 4599766 Noca_0990 Nocardioides sp. JS614 hypothetical protein YP_922198.1 1039896 R 196162 CDS YP_922199.1 119715234 4599767 complement(1041028..1041618) 1 NC_008699.1 PFAM: CBS domain containing protein; KEGG: mmc:Mmcs_5097 putative signal-transduction protein with CBS domains; hypothetical protein 1041618 4599767 Noca_0991 Nocardioides sp. JS614 hypothetical protein YP_922199.1 1041028 R 196162 CDS YP_922200.1 119715235 4599768 1041802..1042458 1 NC_008699.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: fra:Francci3_3253 two component transcriptional regulator, LuxR family; regulatory protein LuxR 1042458 4599768 Noca_0992 Nocardioides sp. JS614 regulatory protein LuxR YP_922200.1 1041802 D 196162 CDS YP_922201.1 119715236 4599769 complement(1042493..1042915) 1 NC_008699.1 KEGG: sma:SAV1271 putative DNA-binding protein; putative DNA-binding protein 1042915 4599769 Noca_0993 Nocardioides sp. JS614 putative DNA-binding protein YP_922201.1 1042493 R 196162 CDS YP_922202.1 119715237 4599770 1043105..1044838 1 NC_008699.1 PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: tfu:Tfu_3046 GAF:ATP-binding region, ATPase-like; GAF domain-containing protein 1044838 4599770 Noca_0994 Nocardioides sp. JS614 GAF domain-containing protein YP_922202.1 1043105 D 196162 CDS YP_922203.1 119715238 4599771 complement(1044950..1045555) 1 NC_008699.1 KEGG: fra:Francci3_1002 hypothetical protein; hypothetical protein 1045555 4599771 Noca_0995 Nocardioides sp. JS614 hypothetical protein YP_922203.1 1044950 R 196162 CDS YP_922204.1 119715239 4599772 1045785..1046675 1 NC_008699.1 PFAM: UspA domain protein; KEGG: mpa:MAP1742c hypothetical protein; UspA domain-containing protein 1046675 4599772 Noca_0996 Nocardioides sp. JS614 UspA domain-containing protein YP_922204.1 1045785 D 196162 CDS YP_922205.1 119715240 4599773 1047004..1047924 1 NC_008699.1 PFAM: UspA domain protein; KEGG: rha:RHA1_ro02263 possible universal stress protein; UspA domain-containing protein 1047924 4599773 Noca_0997 Nocardioides sp. JS614 UspA domain-containing protein YP_922205.1 1047004 D 196162 CDS YP_922206.1 119715241 4599774 1047921..1050455 1 NC_008699.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: ade:Adeh_0468 cation transporting P-type ATPase; P-type HAD superfamily ATPase 1050455 4599774 Noca_0998 Nocardioides sp. JS614 P-type HAD superfamily ATPase YP_922206.1 1047921 D 196162 CDS YP_922207.1 119715242 4599775 complement(1050421..1050828) 1 NC_008699.1 KEGG: pac:PPA1465 hypothetical protein; hypothetical protein 1050828 4599775 Noca_0999 Nocardioides sp. JS614 hypothetical protein YP_922207.1 1050421 R 196162 CDS YP_922208.1 119715243 4599776 1050977..1051858 1 NC_008699.1 PFAM: UspA domain protein; KEGG: mmc:Mmcs_0719 UspA; UspA domain-containing protein 1051858 4599776 Noca_1000 Nocardioides sp. JS614 UspA domain-containing protein YP_922208.1 1050977 D 196162 CDS YP_922209.1 119715244 4599777 1051979..1053361 1 NC_008699.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: mfa:Mfla_1382 beta-lactamase-like protein; beta-lactamase domain-containing protein 1053361 4599777 Noca_1001 Nocardioides sp. JS614 beta-lactamase domain-containing protein YP_922209.1 1051979 D 196162 CDS YP_922210.1 119715245 4599778 1053491..1053925 1 NC_008699.1 KEGG: cef:CE2430 hypothetical protein; hypothetical protein 1053925 4599778 Noca_1002 Nocardioides sp. JS614 hypothetical protein YP_922210.1 1053491 D 196162 CDS YP_922211.1 119715246 4599779 complement(1053935..1054954) 1 NC_008699.1 PFAM: fructose-bisphosphate aldolase, class-I; KEGG: bxe:Bxe_B1334 fructose-bisphosphate aldolase; fructose-bisphosphate aldolase 1054954 4599779 Noca_1003 Nocardioides sp. JS614 fructose-bisphosphate aldolase YP_922211.1 1053935 R 196162 CDS YP_922212.1 119715247 4599780 1055294..1057945 1 NC_008699.1 PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: tfu:Tfu_1311 hypothetical protein; N-acetyltransferase GCN5 1057945 4599780 Noca_1004 Nocardioides sp. JS614 N-acetyltransferase GCN5 YP_922212.1 1055294 D 196162 CDS YP_922213.1 119715248 4599781 1058042..1058923 1 NC_008699.1 PFAM: UspA domain protein; KEGG: mpa:MAP1742c hypothetical protein; UspA domain-containing protein 1058923 4599781 Noca_1005 Nocardioides sp. JS614 UspA domain-containing protein YP_922213.1 1058042 D 196162 CDS YP_922214.1 119715249 4599782 1059033..1060097 1 NC_008699.1 PFAM: PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: xcv:XCV1708 histidine kinase-response regulator hybrid protein; PAS domain-containing protein 1060097 4599782 Noca_1006 Nocardioides sp. JS614 PAS domain-containing protein YP_922214.1 1059033 D 196162 CDS YP_922215.1 119715250 4599783 complement(1060410..1061327) 1 NC_008699.1 PFAM: phosphoesterase; KEGG: sma:SAV5971 secreted acid phosphatase; phosphoesterase 1061327 4599783 Noca_1007 Nocardioides sp. JS614 phosphoesterase YP_922215.1 1060410 R 196162 CDS YP_922216.1 119715251 4599784 complement(1061338..1061739) 1 NC_008699.1 PFAM: regulatory proteins, IclR; KEGG: mmc:Mmcs_1697 regulatory proteins, IclR; regulatory proteins IclR 1061739 4599784 Noca_1008 Nocardioides sp. JS614 regulatory proteins IclR YP_922216.1 1061338 R 196162 CDS YP_922217.1 119715252 4599672 1063015..1064223 1 NC_008699.1 TIGRFAM: 4-carboxymuconolactone decarboxylase; PFAM: alpha/beta hydrolase fold; Carboxymuconolactone decarboxylase; KEGG: mmc:Mmcs_1701 4-carboxymuconolactone decarboxylase; 4-carboxymuconolactone decarboxylase 1064223 4599672 Noca_1011 Nocardioides sp. JS614 4-carboxymuconolactone decarboxylase YP_922217.1 1063015 D 196162 CDS YP_922218.1 119715253 4599673 complement(1064286..1065203) 1 NC_008699.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: mmc:Mmcs_1366 transcriptional regulator, LysR family; LysR family transcriptional regulator 1065203 4599673 Noca_1012 Nocardioides sp. JS614 LysR family transcriptional regulator YP_922218.1 1064286 R 196162 CDS YP_922219.1 119715254 4599674 1065288..1066502 1 NC_008699.1 KEGG: nfa:nfa35170 putative ayl-CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; acetyl-CoA acetyltransferase 1066502 4599674 Noca_1013 Nocardioides sp. JS614 acetyl-CoA acetyltransferase YP_922219.1 1065288 D 196162 CDS YP_922220.1 119715255 4599675 1066499..1067158 1 NC_008699.1 KEGG: mmc:Mmcs_1702 3-oxoacid CoA-transferase, subunit A; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 1067158 4599675 Noca_1014 Nocardioides sp. JS614 3-oxoacid CoA-transferase subunit A YP_922220.1 1066499 D 196162 CDS YP_922221.1 119715256 4599676 1067155..1067805 1 NC_008699.1 KEGG: mmc:Mmcs_1703 3-oxoacid CoA-transferase, subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; butyryl-CoA:acetate CoA transferase 1067805 4599676 Noca_1015 Nocardioides sp. JS614 butyryl-CoA:acetate CoA transferase YP_922221.1 1067155 D 196162 CDS YP_922222.1 119715257 4599677 1067855..1069027 1 NC_008699.1 PFAM: cysteinyl-tRNA synthetase, class Ia; KEGG: tfu:Tfu_1832 cysteine--tRNA ligase; cysteine--tRNA ligase 1069027 4599677 Noca_1016 Nocardioides sp. JS614 cysteine--tRNA ligase YP_922222.1 1067855 D 196162 CDS YP_922223.1 119715258 4599678 1069206..1070129 1 NC_008699.1 KEGG: mmc:Mmcs_1202 hypothetical protein; hypothetical protein 1070129 4599678 Noca_1017 Nocardioides sp. JS614 hypothetical protein YP_922223.1 1069206 D 196162 CDS YP_922224.1 119715259 4599679 complement(1070265..1070426) 1 NC_008699.1 hypothetical protein 1070426 4599679 Noca_1018 Nocardioides sp. JS614 hypothetical protein YP_922224.1 1070265 R 196162 CDS YP_922225.1 119715260 4599680 1070611..1071789 1 NC_008699.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: sma:SAV4680 two-component system sensor kinase; histidine kinase, dimerisation and phosphoacceptor region 1071789 4599680 Noca_1019 Nocardioides sp. JS614 histidine kinase, dimerisation and phosphoacceptor region YP_922225.1 1070611 D 196162 CDS YP_922226.1 119715261 4599681 1071786..1072442 1 NC_008699.1 PFAM: regulatory protein, LuxR; response regulator receiver; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: nfa:nfa42530 putative two-component system response regulator; response regulator receiver 1072442 4599681 Noca_1020 Nocardioides sp. JS614 response regulator receiver YP_922226.1 1071786 D 196162 CDS YP_922227.1 119715262 4599682 1072579..1073475 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tfu:Tfu_1436 ABC-type multidrug transport system ATPase component; ABC transporter-like protein 1073475 4599682 Noca_1021 Nocardioides sp. JS614 ABC transporter-like protein YP_922227.1 1072579 D 196162 CDS YP_922228.1 119715263 4599683 1073472..1074269 1 NC_008699.1 KEGG: mmc:Mmcs_0550 putative ABC transporter membrane protein; hypothetical protein 1074269 4599683 Noca_1022 Nocardioides sp. JS614 hypothetical protein YP_922228.1 1073472 D 196162 CDS YP_922229.1 119715264 4599684 1074398..1074589 1 NC_008699.1 PFAM: protein of unknown function DUF255; KEGG: tfu:Tfu_0451 conserved hypothetical protein; hypothetical protein 1074589 4599684 Noca_1023 Nocardioides sp. JS614 hypothetical protein YP_922229.1 1074398 D 196162 CDS YP_922230.1 119715265 4599685 1074888..1076126 1 NC_008699.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: rha:RHA1_ro01400 probable transposase; transposase IS116/IS110/IS902 family protein 1076126 4599685 Noca_1024 Nocardioides sp. JS614 transposase IS116/IS110/IS902 family protein YP_922230.1 1074888 D 196162 CDS YP_922231.1 119715266 4599686 complement(1076420..1077298) 1 NC_008699.1 hypothetical protein 1077298 4599686 Noca_1025 Nocardioides sp. JS614 hypothetical protein YP_922231.1 1076420 R 196162 CDS YP_922232.1 119715267 4599687 complement(1077424..1078047) 1 NC_008699.1 KEGG: cef:CE0046 hypothetical protein; hypothetical protein 1078047 4599687 Noca_1026 Nocardioides sp. JS614 hypothetical protein YP_922232.1 1077424 R 196162 CDS YP_922233.1 119715268 4599688 complement(1078861..1081236) 1 NC_008699.1 KEGG: hch:HCH_06379 hypothetical protein; hypothetical protein 1081236 4599688 Noca_1027 Nocardioides sp. JS614 hypothetical protein YP_922233.1 1078861 R 196162 CDS YP_922234.1 119715269 4599689 complement(1081693..1082502) 1 NC_008699.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: mbu:Mbur_1610 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 1082502 4599689 Noca_1028 Nocardioides sp. JS614 DegT/DnrJ/EryC1/StrS aminotransferase YP_922234.1 1081693 R 196162 CDS YP_922235.1 119715270 4599690 complement(1082495..1084246) 1 NC_008699.1 PFAM: AAA ATPase, central domain protein; KEGG: tde:TDE1329 ATPase, AAA family; ATPase central domain-containing protein 1084246 4599690 Noca_1029 Nocardioides sp. JS614 ATPase central domain-containing protein YP_922235.1 1082495 R 196162 CDS YP_922236.1 119715271 4599691 complement(1084243..1084959) 1 NC_008699.1 hypothetical protein 1084959 4599691 Noca_1030 Nocardioides sp. JS614 hypothetical protein YP_922236.1 1084243 R 196162 CDS YP_922237.1 119715272 4599692 complement(1084987..1086417) 1 NC_008699.1 hypothetical protein 1086417 4599692 Noca_1031 Nocardioides sp. JS614 hypothetical protein YP_922237.1 1084987 R 196162 CDS YP_922238.1 119715273 4599693 complement(1086476..1087444) 1 NC_008699.1 hypothetical protein 1087444 4599693 Noca_1032 Nocardioides sp. JS614 hypothetical protein YP_922238.1 1086476 R 196162 CDS YP_922239.1 119715274 4599694 complement(1087473..1088348) 1 NC_008699.1 PFAM: aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; KEGG: tac:Ta0575 probable aspartate carbamoyltransferase, catalytic chain; aspartate carbamoyltransferase 1088348 4599694 Noca_1033 Nocardioides sp. JS614 aspartate carbamoyltransferase YP_922239.1 1087473 R 196162 CDS YP_922240.1 119715275 4599695 complement(1088345..1089472) 1 NC_008699.1 PFAM: Radical SAM domain protein; KEGG: rpe:RPE_3191 radical SAM domain protein; radical SAM domain-containing protein 1089472 4599695 Noca_1034 Nocardioides sp. JS614 radical SAM domain-containing protein YP_922240.1 1088345 R 196162 CDS YP_922241.1 119715276 4599696 1089560..1090240 1 NC_008699.1 PFAM: nitroreductase; KEGG: sth:STH638 nitroreductase; nitroreductase 1090240 4599696 Noca_1035 Nocardioides sp. JS614 nitroreductase YP_922241.1 1089560 D 196162 CDS YP_922242.1 119715277 4599697 complement(1090247..1091014) 1 NC_008699.1 hypothetical protein 1091014 4599697 Noca_1036 Nocardioides sp. JS614 hypothetical protein YP_922242.1 1090247 R 196162 CDS YP_922243.1 119715278 4599698 complement(1091016..1093673) 1 NC_008699.1 PFAM: pentapeptide repeat protein; pentapeptide repeat-containing protein 1093673 4599698 Noca_1037 Nocardioides sp. JS614 pentapeptide repeat-containing protein YP_922243.1 1091016 R 196162 CDS YP_922244.1 119715279 4599699 complement(1093670..1095688) 1 NC_008699.1 hypothetical protein 1095688 4599699 Noca_1038 Nocardioides sp. JS614 hypothetical protein YP_922244.1 1093670 R 196162 CDS YP_922245.1 119715280 4599700 complement(1095685..1097034) 1 NC_008699.1 PFAM: protein of unknown function DUF201; hypothetical protein 1097034 4599700 Noca_1039 Nocardioides sp. JS614 hypothetical protein YP_922245.1 1095685 R 196162 CDS YP_922246.1 119715281 4599701 complement(1097031..1097981) 1 NC_008699.1 hypothetical protein 1097981 4599701 Noca_1040 Nocardioides sp. JS614 hypothetical protein YP_922246.1 1097031 R 196162 CDS YP_922247.1 119715282 4599702 1098217..1099443 1 NC_008699.1 hypothetical protein 1099443 4599702 Noca_1041 Nocardioides sp. JS614 hypothetical protein YP_922247.1 1098217 D 196162 CDS YP_922248.1 119715283 4599703 1099509..1100573 1 NC_008699.1 KEGG: sco:SCO2693 oxygenase (secreted protein); oxygenase 1100573 4599703 Noca_1042 Nocardioides sp. JS614 oxygenase YP_922248.1 1099509 D 196162 CDS YP_922249.1 119715284 4599704 1100570..1101388 1 NC_008699.1 hypothetical protein 1101388 4599704 Noca_1043 Nocardioides sp. JS614 hypothetical protein YP_922249.1 1100570 D 196162 CDS YP_922250.1 119715285 4599705 complement(1101818..1102126) 1 NC_008699.1 hypothetical protein 1102126 4599705 Noca_1044 Nocardioides sp. JS614 hypothetical protein YP_922250.1 1101818 R 196162 CDS YP_922251.1 119715286 4599706 1102354..1103046 1 NC_008699.1 KEGG: mmc:Mmcs_0815 hypothetical protein; phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase-like protein 1103046 4599706 Noca_1045 Nocardioides sp. JS614 phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase-like protein YP_922251.1 1102354 D 196162 CDS YP_922252.1 119715287 4599708 1103719..1104951 1 NC_008699.1 hypothetical protein 1104951 4599708 Noca_1047 Nocardioides sp. JS614 hypothetical protein YP_922252.1 1103719 D 196162 CDS YP_922253.1 119715288 4599654 complement(1104941..1105687) 1 NC_008699.1 PFAM: phage Gp37Gp68 family protein; KEGG: mbo:Mb2753 hypothetical protein; phage Gp37Gp68 family protein 1105687 4599654 Noca_1048 Nocardioides sp. JS614 phage Gp37Gp68 family protein YP_922253.1 1104941 R 196162 CDS YP_922254.1 119715289 4599655 1105779..1106060 1 NC_008699.1 hypothetical protein 1106060 4599655 Noca_1049 Nocardioides sp. JS614 hypothetical protein YP_922254.1 1105779 D 196162 CDS YP_922255.1 119715290 4599656 1106236..1107102 1 NC_008699.1 hypothetical protein 1107102 4599656 Noca_1050 Nocardioides sp. JS614 hypothetical protein YP_922255.1 1106236 D 196162 CDS YP_922256.1 119715291 4599657 complement(1107113..1108519) 1 NC_008699.1 KEGG: pfl:PFL_4977 site-specific recombinase, phage integrase family; hypothetical protein 1108519 4599657 Noca_1051 Nocardioides sp. JS614 hypothetical protein YP_922256.1 1107113 R 196162 CDS YP_922257.1 119715292 4599658 1108659..1110617 1 NC_008699.1 PFAM: protein of unknown function DUF255; KEGG: fra:Francci3_3900 protein of unknown function DUF255; hypothetical protein 1110617 4599658 Noca_1052 Nocardioides sp. JS614 hypothetical protein YP_922257.1 1108659 D 196162 CDS YP_922258.1 119715293 4599659 1110758..1112275 1 NC_008699.1 PFAM: aldehyde dehydrogenase; KEGG: fal:FRAAL4279 putative aldehyde dehydrogenase; aldehyde dehydrogenase 1112275 4599659 Noca_1053 Nocardioides sp. JS614 aldehyde dehydrogenase YP_922258.1 1110758 D 196162 CDS YP_922259.1 119715294 4599660 complement(1112319..1113218) 1 NC_008699.1 PFAM: alpha/beta hydrolase fold; KEGG: mmc:Mmcs_0140 acylglycerol lipase; alpha/beta hydrolase fold protein 1113218 4599660 Noca_1054 Nocardioides sp. JS614 alpha/beta hydrolase fold protein YP_922259.1 1112319 R 196162 CDS YP_922260.1 119715295 4599661 complement(1113257..1114021) 1 NC_008699.1 PFAM: Hly-III family protein; KEGG: sco:SCO4978 putative integral membrane protein; Hly-III family protein 1114021 4599661 Noca_1055 Nocardioides sp. JS614 Hly-III family protein YP_922260.1 1113257 R 196162 CDS YP_922261.1 119715296 4599662 1114149..1114925 1 NC_008699.1 KEGG: tfu:Tfu_0456 di-trans-poly-cis-decaprenylcistransferase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl pyrophosphate synthetase 1114925 4599662 Noca_1056 Nocardioides sp. JS614 undecaprenyl pyrophosphate synthetase YP_922261.1 1114149 D 196162 CDS YP_922262.1 119715297 4599663 1115277..1116677 1 NC_008699.1 PFAM: PhoH family protein; SMART: Nucleotide binding protein, PINc; KEGG: sma:SAV3236 putative ATP-binding protein; PhoH family protein 1116677 4599663 Noca_1057 Nocardioides sp. JS614 PhoH family protein YP_922262.1 1115277 D 196162 CDS YP_922263.1 119715298 4599664 1116992..1117660 1 NC_008699.1 KEGG: tfu:Tfu_0458 secreted protein; secreted protein 1117660 4599664 Noca_1058 Nocardioides sp. JS614 secreted protein YP_922263.1 1116992 D 196162 CDS YP_922264.1 119715299 4599665 complement(1117666..1119063) 1 NC_008699.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1119063 fumC 4599665 fumC Nocardioides sp. JS614 fumarate hydratase YP_922264.1 1117666 R 196162 CDS YP_922265.1 119715300 4599666 complement(1119060..1119743) 1 NC_008699.1 KEGG: sma:SAV2969 hypothetical protein; hypothetical protein 1119743 4599666 Noca_1060 Nocardioides sp. JS614 hypothetical protein YP_922265.1 1119060 R 196162 CDS YP_922266.1 119715301 4599667 complement(1119973..1121688) 1 NC_008699.1 TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: nfa:nfa32060 putative fumarate hydratase; fumarase 1121688 4599667 Noca_1061 Nocardioides sp. JS614 fumarase YP_922266.1 1119973 R 196162 CDS YP_922267.1 119715302 4599668 1121726..1122346 1 NC_008699.1 PFAM: protein of unknown function DUF1707; KEGG: sma:SAV5183 hypothetical protein; hypothetical protein 1122346 4599668 Noca_1062 Nocardioides sp. JS614 hypothetical protein YP_922267.1 1121726 D 196162 CDS YP_922268.1 119715303 4599669 1122469..1123551 1 NC_008699.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sco:SCO4240 ABC transporter ATP-binding protein; ABC transporter-like protein 1123551 4599669 Noca_1063 Nocardioides sp. JS614 ABC transporter-like protein YP_922268.1 1122469 D 196162 CDS YP_922269.1 119715304 4599544 complement(1123642..1124535) 1 NC_008699.1 PFAM: alpha/beta hydrolase fold; KEGG: rpc:RPC_1656 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 1124535 4599544 Noca_1064 Nocardioides sp. JS614 alpha/beta hydrolase fold protein YP_922269.1 1123642 R 196162 CDS YP_922270.1 119715305 4599545 1124718..1125563 1 NC_008699.1 PFAM: PGAP1 family protein; KEGG: sus:Acid_1787 PGAP1 family protein; PGAP1 family protein 1125563 4599545 Noca_1065 Nocardioides sp. JS614 PGAP1 family protein YP_922270.1 1124718 D 196162 CDS YP_922271.1 119715306 4599546 complement(1125528..1126547) 1 NC_008699.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II 1126547 glpX 4599546 glpX Nocardioides sp. JS614 fructose 1,6-bisphosphatase II YP_922271.1 1125528 R 196162 CDS YP_922272.1 119715307 4599547 complement(1126577..1127617) 1 NC_008699.1 PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase; KEGG: mmc:Mmcs_2797 ABC transporter related; ABC transporter-like protein 1127617 4599547 Noca_1067 Nocardioides sp. JS614 ABC transporter-like protein YP_922272.1 1126577 R 196162 CDS YP_922273.1 119715308 4599548 complement(1127614..1128381) 1 NC_008699.1 TIGRFAM: NifC-like ABC-type porter; molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rha:RHA1_ro03637 probable ABC molybdenum transporter, permease protein; NifC-like ABC-type porter 1128381 4599548 Noca_1068 Nocardioides sp. JS614 NifC-like ABC-type porter YP_922273.1 1127614 R 196162 CDS YP_922274.1 119715309 4599549 complement(1128389..1129147) 1 NC_008699.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: mmc:Mmcs_0045 molybdenum ABC transporter, periplasmic molybdate-binding protein; molybdenum ABC transporter, periplasmic molybdate-binding protein 1129147 4599549 Noca_1069 Nocardioides sp. JS614 molybdenum ABC transporter, periplasmic molybdate-binding protein YP_922274.1 1128389 R 196162 CDS YP_922275.1 119715310 4599550 complement(1129144..1129536) 1 NC_008699.1 TIGRFAM: DNA binding domain, excisionase family; PFAM: regulatory protein, MerR; TOBE domain protein; KEGG: fal:FRAAL6311 molybdenum binding protein; DNA binding domain-containing protein 1129536 4599550 Noca_1070 Nocardioides sp. JS614 DNA binding domain-containing protein YP_922275.1 1129144 R 196162 CDS YP_922276.1 119715311 4599551 1129765..1130328 1 NC_008699.1 hypothetical protein 1130328 4599551 Noca_1071 Nocardioides sp. JS614 hypothetical protein YP_922276.1 1129765 D 196162 CDS YP_922277.1 119715312 4599552 complement(1130387..1132564) 1 NC_008699.1 TIGRFAM: conserved repeat domain; KEGG: cel:H02F09.3 Hypothetical protein H02F09.3; hypothetical protein 1132564 4599552 Noca_1072 Nocardioides sp. JS614 hypothetical protein YP_922277.1 1130387 R 196162 CDS YP_922278.1 119715313 4599553 complement(1132790..1133023) 1 NC_008699.1 TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit; KEGG: sma:SAV3212 putative exoribonuclease small subunit; exodeoxyribonuclease VII small subunit 1133023 4599553 Noca_1073 Nocardioides sp. JS614 exodeoxyribonuclease VII small subunit YP_922278.1 1132790 R 196162 CDS YP_922279.1 119715314 4599554 complement(1133007..1134242) 1 NC_008699.1 KEGG: sco:SCO5056 putative exoribonuclease large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit; nucleic acid binding, OB-fold, tRNA/helicase-type; exodeoxyribonuclease VII large subunit 1134242 4599554 Noca_1074 Nocardioides sp. JS614 exodeoxyribonuclease VII large subunit YP_922279.1 1133007 R 196162 CDS YP_922280.1 119715315 4599555 1134319..1135383 1 NC_008699.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1135383 ispH 4599555 ispH Nocardioides sp. JS614 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_922280.1 1134319 D 196162 CDS YP_922281.1 119715316 4599556 1135392..1136018 1 NC_008699.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain; KEGG: sco:SCO7360 hypothetical protein; translation factor SUA5 1136018 4599556 Noca_1076 Nocardioides sp. JS614 translation factor SUA5 YP_922281.1 1135392 D 196162 CDS YP_922282.1 119715317 4599558 complement(1136431..1137555) 1 NC_008699.1 PFAM: protein of unknown function DUF195; KEGG: fal:FRAAL6141 hypothetical protein; putative signal peptide; putative DNA recombination protein protein (RmuC-like ); hypothetical protein 1137555 4599558 Noca_1078 Nocardioides sp. JS614 hypothetical protein YP_922282.1 1136431 R 196162 CDS YP_922283.1 119715318 4599559 complement(1137659..1138447) 1 NC_008699.1 TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: tfu:Tfu_0258 AP endonuclease, family 1:exodeoxyribonuclease III xth; exodeoxyribonuclease III 1138447 4599559 Noca_1079 Nocardioides sp. JS614 exodeoxyribonuclease III YP_922283.1 1137659 R 196162 CDS YP_922284.1 119715319 4599560 1138517..1139596 1 NC_008699.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 1139596 4599560 Noca_1080 Nocardioides sp. JS614 GTP-dependent nucleic acid-binding protein EngD YP_922284.1 1138517 D 196162 CDS YP_922285.1 119715320 4599561 1139738..1140883 1 NC_008699.1 hypothetical protein 1140883 4599561 Noca_1081 Nocardioides sp. JS614 hypothetical protein YP_922285.1 1139738 D 196162 CDS YP_922286.1 119715321 4599562 1140889..1141923 1 NC_008699.1 hypothetical protein 1141923 4599562 Noca_1082 Nocardioides sp. JS614 hypothetical protein YP_922286.1 1140889 D 196162 CDS YP_922287.1 119715322 4599563 complement(1141939..1142658) 1 NC_008699.1 hypothetical protein 1142658 4599563 Noca_1083 Nocardioides sp. JS614 hypothetical protein YP_922287.1 1141939 R 196162 CDS YP_922288.1 119715323 4599564 complement(1142804..1143727) 1 NC_008699.1 hypothetical protein 1143727 4599564 Noca_1084 Nocardioides sp. JS614 hypothetical protein YP_922288.1 1142804 R 196162 CDS YP_922289.1 119715324 4599565 1143851..1145473 1 NC_008699.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: pen:PSEEN0753 adenine specific DNA methylase; DNA methylase N-4/N-6 domain-containing protein 1145473 4599565 Noca_1085 Nocardioides sp. JS614 DNA methylase N-4/N-6 domain-containing protein YP_922289.1 1143851 D 196162 CDS YP_922290.1 119715325 4599566 1145470..1147992 1 NC_008699.1 PFAM: type III restriction enzyme, res subunit; KEGG: pac:PPA1612 putative type III restriction enzyme; type III restriction enzyme, res subunit 1147992 4599566 Noca_1086 Nocardioides sp. JS614 type III restriction enzyme, res subunit YP_922290.1 1145470 D 196162 CDS YP_922291.1 119715326 4599567 complement(1148187..1148480) 1 NC_008699.1 hypothetical protein 1148480 4599567 Noca_1087 Nocardioides sp. JS614 hypothetical protein YP_922291.1 1148187 R 196162 CDS YP_922292.1 119715327 4599568 complement(1148506..1149189) 1 NC_008699.1 PFAM: Resolvase, N-terminal domain; KEGG: bcl:ABC2865 site-specific recombinase for integration and excision; resolvase domain-containing protein-containing protein 1149189 4599568 Noca_1088 Nocardioides sp. JS614 resolvase domain-containing protein-containing protein YP_922292.1 1148506 R 196162 CDS YP_922293.1 119715328 4599569 complement(1149566..1150267) 1 NC_008699.1 hypothetical protein 1150267 4599569 Noca_1089 Nocardioides sp. JS614 hypothetical protein YP_922293.1 1149566 R 196162 CDS YP_922294.1 119715329 4599570 complement(1150783..1152180) 1 NC_008699.1 PFAM: Resolvase, N-terminal domain; Recombinase; KEGG: mmc:Mmcs_3518 recombinase; recombinase 1152180 4599570 Noca_1090 Nocardioides sp. JS614 recombinase YP_922294.1 1150783 R 196162 CDS YP_922295.1 119715330 4599572 complement(1153352..1153663) 1 NC_008699.1 PFAM: transposase IS3/IS911 family protein; KEGG: cef:CE2618 putative transposase; transposase IS3/IS911 family protein 1153663 4599572 Noca_1092 Nocardioides sp. JS614 transposase IS3/IS911 family protein YP_922295.1 1153352 R 196162 CDS YP_922296.1 119715331 4599573 complement(1153904..1154587) 1 NC_008699.1 hypothetical protein 1154587 4599573 Noca_1093 Nocardioides sp. JS614 hypothetical protein YP_922296.1 1153904 R 196162 CDS YP_922297.1 119715332 4599574 complement(1154644..1155243) 1 NC_008699.1 hypothetical protein 1155243 4599574 Noca_1094 Nocardioides sp. JS614 hypothetical protein YP_922297.1 1154644 R 196162 CDS YP_922298.1 119715333 4599575 complement(1155215..1156129) 1 NC_008699.1 KEGG: mta:Moth_2233 hypothetical protein; hypothetical protein 1156129 4599575 Noca_1095 Nocardioides sp. JS614 hypothetical protein YP_922298.1 1155215 R 196162 CDS YP_922299.1 119715334 4599576 complement(1156133..1157188) 1 NC_008699.1 KEGG: hne:HNE_2537 hypothetical protein; hypothetical protein 1157188 4599576 Noca_1096 Nocardioides sp. JS614 hypothetical protein YP_922299.1 1156133 R 196162 CDS YP_922300.1 119715335 4599577 complement(1157175..1157726) 1 NC_008699.1 PFAM: ExsB family protein; KEGG: mta:Moth_2235 ExsB; ExsB family protein 1157726 4599577 Noca_1097 Nocardioides sp. JS614 ExsB family protein YP_922300.1 1157175 R 196162 CDS YP_922301.1 119715336 4599578 complement(1157792..1158532) 1 NC_008699.1 PFAM: Radical SAM domain protein; KEGG: fra:Francci3_1753 radical SAM; radical SAM domain-containing protein 1158532 4599578 Noca_1098 Nocardioides sp. JS614 radical SAM domain-containing protein YP_922301.1 1157792 R 196162 CDS YP_922302.1 119715337 4599579 complement(1158516..1158872) 1 NC_008699.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: tma:TM0038 6-pyruvoyltetrahydropterin synthase; putative 6-pyruvoyl tetrahydropterin synthase 1158872 4599579 Noca_1099 Nocardioides sp. JS614 putative 6-pyruvoyl tetrahydropterin synthase YP_922302.1 1158516 R 196162 CDS YP_922303.1 119715338 4599580 complement(1159085..1160236) 1 NC_008699.1 PFAM: phage integrase family protein; KEGG: mmc:Mmcs_4828 phage integrase; phage integrase family protein 1160236 4599580 Noca_1100 Nocardioides sp. JS614 phage integrase family protein YP_922303.1 1159085 R 196162 CDS YP_922304.1 119715339 4599581 1160302..1161252 1 NC_008699.1 PFAM: helix-turn-helix domain protein; KEGG: fra:Francci3_0807 transcriptional regulator, XRE family; helix-turn-helix domain-containing protein 1161252 4599581 Noca_1101 Nocardioides sp. JS614 helix-turn-helix domain-containing protein YP_922304.1 1160302 D 196162 CDS YP_922305.1 119715340 4599355 complement(1161255..1163873) 1 NC_008699.1 KEGG: mmc:Mmcs_1430 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member-like protein; exonuclease V subunit alpha 1163873 4599355 Noca_1102 Nocardioides sp. JS614 exonuclease V subunit alpha YP_922305.1 1161255 R 196162 CDS YP_922306.1 119715341 4599356 1164146..1166326 1 NC_008699.1 PFAM: protein of unknown function DUF262; protein of unknown function DUF1524 RloF; KEGG: nar:Saro_0260 protein of unknown function DUF1524 RloF; hypothetical protein 1166326 4599356 Noca_1103 Nocardioides sp. JS614 hypothetical protein YP_922306.1 1164146 D 196162 CDS YP_922307.1 119715342 4599357 1166348..1167907 1 NC_008699.1 TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: xfa:XF2728 type I restriction-modification system DNA methylase; type I restriction-modification system, M subunit 1167907 4599357 Noca_1104 Nocardioides sp. JS614 type I restriction-modification system, M subunit YP_922307.1 1166348 D 196162 CDS YP_922308.1 119715343 4599358 1167904..1168581 1 NC_008699.1 PFAM: restriction modification system DNA specificity domain; KEGG: xfa:XF2726 type I restriction-modification system specificity determinant; restriction modification system DNA specificity subunit 1168581 4599358 Noca_1105 Nocardioides sp. JS614 restriction modification system DNA specificity subunit YP_922308.1 1167904 D 196162 CDS YP_922309.1 119715344 4599359 1168614..1169099 1 NC_008699.1 PFAM: restriction modification system DNA specificity domain; KEGG: hpa:HPAG1_0832 HP0790-like protein; restriction modification system DNA specificity subunit 1169099 4599359 Noca_1106 Nocardioides sp. JS614 restriction modification system DNA specificity subunit YP_922309.1 1168614 D 196162 CDS YP_922310.1 119715345 4599360 1169096..1172137 1 NC_008699.1 KEGG: xfa:XF2725 type I restriction-modification system endonuclease; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; HsdR family type I site-specific deoxyribonuclease 1172137 4599360 Noca_1107 Nocardioides sp. JS614 HsdR family type I site-specific deoxyribonuclease YP_922310.1 1169096 D 196162 CDS YP_922311.1 119715346 4599361 1172262..1172468 1 NC_008699.1 KEGG: vvy:VV1848 hypothetical protein; hypothetical protein 1172468 4599361 Noca_1108 Nocardioides sp. JS614 hypothetical protein YP_922311.1 1172262 D 196162 CDS YP_922312.1 119715347 4599362 1172667..1172927 1 NC_008699.1 hypothetical protein 1172927 4599362 Noca_1109 Nocardioides sp. JS614 hypothetical protein YP_922312.1 1172667 D 196162 CDS YP_922313.1 119715348 4599363 1172980..1173759 1 NC_008699.1 hypothetical protein 1173759 4599363 Noca_1110 Nocardioides sp. JS614 hypothetical protein YP_922313.1 1172980 D 196162 CDS YP_922314.1 119715349 4599364 complement(1174217..1175203) 1 NC_008699.1 KEGG: pae:PA1915 hypothetical protein; hypothetical protein 1175203 4599364 Noca_1111 Nocardioides sp. JS614 hypothetical protein YP_922314.1 1174217 R 196162 CDS YP_922315.1 119715350 4599365 1175367..1175762 1 NC_008699.1 hypothetical protein 1175762 4599365 Noca_1112 Nocardioides sp. JS614 hypothetical protein YP_922315.1 1175367 D 196162 CDS YP_922316.1 119715351 4599366 1175846..1177267 1 NC_008699.1 PFAM: FAD dependent oxidoreductase; KEGG: tfu:Tfu_2058 hypothetical protein; FAD dependent oxidoreductase 1177267 4599366 Noca_1113 Nocardioides sp. JS614 FAD dependent oxidoreductase YP_922316.1 1175846 D 196162 CDS YP_922317.1 119715352 4599367 1177372..1178850 1 NC_008699.1 PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; KEGG: pfl:PFL_5732 cytosine/purine/uracil/thiamine/allantoin permease family protein; cytosine/purines uracil thiamine allantoin permease 1178850 4599367 Noca_1114 Nocardioides sp. JS614 cytosine/purines uracil thiamine allantoin permease YP_922317.1 1177372 D 196162 CDS YP_922318.1 119715353 4599368 1178931..1180451 1 NC_008699.1 PFAM: aldehyde dehydrogenase; KEGG: mlo:mlr4198 aldehyde dehydrogenase; betaine-aldehyde dehydrogenase 1180451 4599368 Noca_1115 Nocardioides sp. JS614 betaine-aldehyde dehydrogenase YP_922318.1 1178931 D 196162 CDS YP_922319.1 119715354 4599369 1180451..1181899 1 NC_008699.1 PFAM: aldehyde dehydrogenase; KEGG: mes:Meso_4451 aldehyde dehydrogenase; succinate semialdehyde dehydrogenase 1181899 4599369 Noca_1116 Nocardioides sp. JS614 succinate semialdehyde dehydrogenase YP_922319.1 1180451 D 196162 CDS YP_922320.1 119715355 4599370 complement(1181997..1184540) 1 NC_008699.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: mca:MCA1204 sensory box histidine kinase/response regulator; ATPase domain-containing protein 1184540 4599370 Noca_1117 Nocardioides sp. JS614 ATPase domain-containing protein YP_922320.1 1181997 R 196162 CDS YP_922321.1 119715356 4599371 complement(1184642..1185376) 1 NC_008699.1 TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sco:SCO5621 RNA polymerase sigma factor WhiG; FliA/WhiG family RNA polymerase sigma factor 1185376 4599371 Noca_1118 Nocardioides sp. JS614 FliA/WhiG family RNA polymerase sigma factor YP_922321.1 1184642 R 196162 CDS YP_922322.1 119715357 4599372 complement(1185426..1187435) 1 NC_008699.1 PFAM: peptidase M23B; peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins; KEGG: tfu:Tfu_0368 hypothetical protein; peptidase M23B 1187435 4599372 Noca_1119 Nocardioides sp. JS614 peptidase M23B YP_922322.1 1185426 R 196162 CDS YP_922323.1 119715358 4599373 complement(1187446..1187769) 1 NC_008699.1 KEGG: bps:BPSS1265 hypothetical protein; hypothetical protein 1187769 4599373 Noca_1120 Nocardioides sp. JS614 hypothetical protein YP_922323.1 1187446 R 196162 CDS YP_922324.1 119715359 4599374 complement(1187847..1188269) 1 NC_008699.1 KEGG: sat:SYN_00814 tfp pilus assembly protein, major pilin; hypothetical protein 1188269 4599374 Noca_1121 Nocardioides sp. JS614 hypothetical protein YP_922324.1 1187847 R 196162 CDS YP_922325.1 119715360 4599375 1188521..1188991 1 NC_008699.1 KEGG: eba:ebA1616 general secretion protein H; hypothetical protein 1188991 4599375 Noca_1122 Nocardioides sp. JS614 hypothetical protein YP_922325.1 1188521 D 196162 CDS YP_922326.1 119715361 4599376 1188975..1190732 1 NC_008699.1 KEGG: bpm:BURPS1710b_2168 Hep_Hag family protein/haemagluttinin motif family protein/YadA-like domain protein; hypothetical protein 1190732 4599376 Noca_1123 Nocardioides sp. JS614 hypothetical protein YP_922326.1 1188975 D 196162 CDS YP_922327.1 119715362 4599377 1190729..1191379 1 NC_008699.1 hypothetical protein 1191379 4599377 Noca_1124 Nocardioides sp. JS614 hypothetical protein YP_922327.1 1190729 D 196162 CDS YP_922328.1 119715363 4599378 1191382..1192818 1 NC_008699.1 hypothetical protein 1192818 4599378 Noca_1125 Nocardioides sp. JS614 hypothetical protein YP_922328.1 1191382 D 196162 CDS YP_922329.1 119715364 4599379 1192909..1194201 1 NC_008699.1 KEGG: rxy:Rxyl_1165 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; twitching motility protein 1194201 4599379 Noca_1126 Nocardioides sp. JS614 twitching motility protein YP_922329.1 1192909 D 196162 CDS YP_922330.1 119715365 4599380 1194192..1195427 1 NC_008699.1 PFAM: type II secretion system protein; KEGG: pca:Pcar_2147 type IV pilus biogenesis protein PilC; type II secretion system protein 1195427 4599380 Noca_1127 Nocardioides sp. JS614 type II secretion system protein YP_922330.1 1194192 D 196162 CDS YP_922331.1 119715366 4599381 1195424..1197115 1 NC_008699.1 PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; KEGG: tte:TTE1262 predicted ATPases involved in pili biogenesis, PilB homologs; type II secretion system protein E 1197115 4599381 Noca_1128 Nocardioides sp. JS614 type II secretion system protein E YP_922331.1 1195424 D 196162 CDS YP_922332.1 119715367 4599382 complement(1197119..1197619) 1 NC_008699.1 KEGG: sma:SAV4026 AmfC protein; hypothetical protein 1197619 4599382 Noca_1129 Nocardioides sp. JS614 hypothetical protein YP_922332.1 1197119 R 196162 CDS YP_922333.1 119715368 4599383 complement(1197616..1198716) 1 NC_008699.1 KEGG: dra:DR0442 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; twitching motility protein 1198716 4599383 Noca_1130 Nocardioides sp. JS614 twitching motility protein YP_922333.1 1197616 R 196162 CDS YP_922334.1 119715369 4599384 1199060..1200211 1 NC_008699.1 TIGRFAM: type IV pilus assembly protein PilM; KEGG: ade:Adeh_0641 type IV pilus assembly protein PilM; type IV pilus assembly protein PilM 1200211 4599384 Noca_1131 Nocardioides sp. JS614 type IV pilus assembly protein PilM YP_922334.1 1199060 D 196162 CDS YP_922335.1 119715370 4599385 1200208..1200930 1 NC_008699.1 PFAM: Fimbrial assembly family protein; fimbrial assembly family protein 1200930 4599385 Noca_1132 Nocardioides sp. JS614 fimbrial assembly family protein YP_922335.1 1200208 D 196162 CDS YP_922336.1 119715371 4599386 1200930..1201628 1 NC_008699.1 hypothetical protein 1201628 4599386 Noca_1133 Nocardioides sp. JS614 hypothetical protein YP_922336.1 1200930 D 196162 CDS YP_922337.1 119715372 4599387 1201631..1202458 1 NC_008699.1 KEGG: sus:Acid_4274 serine/threonine protein kinase; serine/threonine protein kinase 1202458 4599387 Noca_1134 Nocardioides sp. JS614 serine/threonine protein kinase YP_922337.1 1201631 D 196162 CDS YP_922338.1 119715373 4599388 1202472..1203272 1 NC_008699.1 hypothetical protein 1203272 4599388 Noca_1135 Nocardioides sp. JS614 hypothetical protein YP_922338.1 1202472 D 196162 CDS YP_922339.1 119715374 4599389 1203269..1204054 1 NC_008699.1 PFAM: peptidase A24A, prepilin type IV; peptidase A24A domain protein; KEGG: rxy:Rxyl_1154 peptidase A24A-like protein; peptidase A24A domain-containing protein 1204054 4599389 Noca_1136 Nocardioides sp. JS614 peptidase A24A domain-containing protein YP_922339.1 1203269 D 196162 CDS YP_922340.1 119715375 4599390 1204275..1206440 1 NC_008699.1 KEGG: mag:amb2980 hypothetical 918 kDa protein Y4LL; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; diguanylate cyclase 1206440 4599390 Noca_1137 Nocardioides sp. JS614 diguanylate cyclase YP_922340.1 1204275 D 196162 CDS YP_922341.1 119715376 4599391 complement(1206404..1208887) 1 NC_008699.1 KEGG: rxy:Rxyl_2783 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 1208887 4599391 Noca_1138 Nocardioides sp. JS614 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_922341.1 1206404 R 196162 CDS YP_922342.1 119715377 4599392 complement(1208957..1211608) 1 NC_008699.1 KEGG: gme:Gmet_0700 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 1211608 4599392 Noca_1139 Nocardioides sp. JS614 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_922342.1 1208957 R 196162 CDS YP_922343.1 119715378 4599315 1211702..1213423 1 NC_008699.1 proposed role in polysaccahride synthesis; putative FAD-binding dehydrogenase 1213423 4599315 Noca_1140 Nocardioides sp. JS614 putative FAD-binding dehydrogenase YP_922343.1 1211702 D 196162 CDS YP_922344.1 119715379 4599316 complement(1213435..1213911) 1 NC_008699.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: sco:SCO4974 deaminase; guanine deaminase 1213911 4599316 Noca_1141 Nocardioides sp. JS614 guanine deaminase YP_922344.1 1213435 R 196162 CDS YP_922345.1 119715380 4599317 complement(1213911..1214780) 1 NC_008699.1 PFAM: Uricase; KEGG: rha:RHA1_ro01568 urate oxidase; urate oxidase 1214780 4599317 Noca_1142 Nocardioides sp. JS614 urate oxidase YP_922345.1 1213911 R 196162 CDS YP_922346.1 119715381 4599318 complement(1214782..1215111) 1 NC_008699.1 PFAM: Transthyretin; KEGG: nfa:nfa52430 hypothetical protein; transthyretin 1215111 4599318 Noca_1143 Nocardioides sp. JS614 transthyretin YP_922346.1 1214782 R 196162 CDS YP_922347.1 119715382 4599319 complement(1215108..1215599) 1 NC_008699.1 KEGG: rha:RHA1_ro01566 possible urate oxidase, N-terminal; putative urate oxidase, N-terminal 1215599 4599319 Noca_1144 Nocardioides sp. JS614 putative urate oxidase, N-terminal YP_922347.1 1215108 R 196162 CDS YP_922348.1 119715383 4599320 1215764..1216225 1 NC_008699.1 hypothetical protein 1216225 4599320 Noca_1145 Nocardioides sp. JS614 hypothetical protein YP_922348.1 1215764 D 196162 CDS YP_922349.1 119715384 4599321 complement(1216239..1216610) 1 NC_008699.1 PFAM: protein of unknown function DUF202; KEGG: cgb:cg0135 putative inner membrane protein; hypothetical protein 1216610 4599321 Noca_1146 Nocardioides sp. JS614 hypothetical protein YP_922349.1 1216239 R 196162 CDS YP_922350.1 119715385 4599322 complement(1216621..1218084) 1 NC_008699.1 hypothetical protein 1218084 4599322 Noca_1147 Nocardioides sp. JS614 hypothetical protein YP_922350.1 1216621 R 196162 CDS YP_922351.1 119715386 4599323 1218131..1218937 1 NC_008699.1 KEGG: sma:SAV2762 hypothetical protein; hypothetical protein 1218937 4599323 Noca_1148 Nocardioides sp. JS614 hypothetical protein YP_922351.1 1218131 D 196162 CDS YP_922352.1 119715387 4599324 1219149..1222109 1 NC_008699.1 KEGG: mmu:677305 hypothetical protein LOC677305; hypothetical protein 1222109 4599324 Noca_1149 Nocardioides sp. JS614 hypothetical protein YP_922352.1 1219149 D 196162 CDS YP_922353.1 119715388 4599325 complement(1222197..1223807) 1 NC_008699.1 hypothetical protein 1223807 4599325 Noca_1150 Nocardioides sp. JS614 hypothetical protein YP_922353.1 1222197 R 196162 CDS YP_922354.1 119715389 4599326 1224034..1227153 1 NC_008699.1 KEGG: csa:Csal_0055 putative hemagglutinin/hemolysin-related protein; hypothetical protein 1227153 4599326 Noca_1151 Nocardioides sp. JS614 hypothetical protein YP_922354.1 1224034 D 196162 CDS YP_922355.1 119715390 4599327 complement(1227551..1228483) 1 NC_008699.1 KEGG: afm:Afu4g03440 hypothetical protein; hypothetical protein 1228483 4599327 Noca_1152 Nocardioides sp. JS614 hypothetical protein YP_922355.1 1227551 R 196162 CDS YP_922356.1 119715391 4599328 1228746..1229060 1 NC_008699.1 KEGG: rha:RHA1_ro08006 possible growth inhibitor; putative growth inhibitor 1229060 4599328 Noca_1153 Nocardioides sp. JS614 putative growth inhibitor YP_922356.1 1228746 D 196162 CDS YP_922357.1 119715392 4599329 1229066..1229440 1 NC_008699.1 PFAM: NUDIX hydrolase; KEGG: sma:SAV3187 putative mutT-like protein; NUDIX hydrolase 1229440 4599329 Noca_1154 Nocardioides sp. JS614 NUDIX hydrolase YP_922357.1 1229066 D 196162 CDS YP_922358.1 119715393 4599330 1229448..1229738 1 NC_008699.1 hypothetical protein 1229738 4599330 Noca_1155 Nocardioides sp. JS614 hypothetical protein YP_922358.1 1229448 D 196162 CDS YP_922359.1 119715394 4599331 1229809..1231080 1 NC_008699.1 KEGG: cch:Cag_1709 hypothetical protein; hypothetical protein 1231080 4599331 Noca_1156 Nocardioides sp. JS614 hypothetical protein YP_922359.1 1229809 D 196162 CDS YP_922360.1 119715395 4599332 1231160..1232068 1 NC_008699.1 PFAM: LmbE family protein; KEGG: sma:SAV3138 N-acetyl-1-D-myo-inosityl-2-amino-2-deoxy-alpha-D- glucopyranoside deacetylase; LmbE family protein 1232068 4599332 Noca_1157 Nocardioides sp. JS614 LmbE family protein YP_922360.1 1231160 D 196162 CDS YP_922361.1 119715396 4599333 1232106..1232441 1 NC_008699.1 hypothetical protein 1232441 4599333 Noca_1158 Nocardioides sp. JS614 hypothetical protein YP_922361.1 1232106 D 196162 CDS YP_922362.1 119715397 4599335 complement(1232806..1233030) 1 NC_008699.1 PFAM: protein of unknown function DUF433; KEGG: rpc:RPC_2760 protein of unknown function DUF433; hypothetical protein 1233030 4599335 Noca_1160 Nocardioides sp. JS614 hypothetical protein YP_922362.1 1232806 R 196162 CDS YP_922363.1 119715398 4599336 1233072..1234814 1 NC_008699.1 PFAM: VanW family protein; KEGG: rha:RHA1_ro05201 hypothetical protein; VanW family protein 1234814 4599336 Noca_1161 Nocardioides sp. JS614 VanW family protein YP_922363.1 1233072 D 196162 CDS YP_922364.1 119715399 4599337 1234886..1235731 1 NC_008699.1 PFAM: lipase, class 2; KEGG: rxy:Rxyl_2289 lipase, class 2; lipase, class 2 1235731 4599337 Noca_1162 Nocardioides sp. JS614 lipase, class 2 YP_922364.1 1234886 D 196162 CDS YP_922365.1 119715400 4599338 complement(1235872..1236951) 1 NC_008699.1 PFAM: glycerate kinase; KEGG: rha:RHA1_ro02573 glycerate kinase; glycerate kinase 1236951 4599338 Noca_1163 Nocardioides sp. JS614 glycerate kinase YP_922365.1 1235872 R 196162 CDS YP_922366.1 119715401 4599339 complement(1236972..1237487) 1 NC_008699.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: rha:RHA1_ro05076 possible carbonic anhydrase; hexapaptide repeat-containing transferase 1237487 4599339 Noca_1164 Nocardioides sp. JS614 hexapaptide repeat-containing transferase YP_922366.1 1236972 R 196162 CDS YP_922367.1 119715402 4599340 complement(1237502..1238530) 1 NC_008699.1 PFAM: cyclase family protein; KEGG: rxy:Rxyl_0352 putative cyclase; cyclase family protein 1238530 4599340 Noca_1165 Nocardioides sp. JS614 cyclase family protein YP_922367.1 1237502 R 196162 CDS YP_922368.1 119715403 4599341 1238590..1239645 1 NC_008699.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: mta:Moth_2268 alcohol dehydrogenase superfamily, zinc-containing; alcohol dehydrogenase 1239645 4599341 Noca_1166 Nocardioides sp. JS614 alcohol dehydrogenase YP_922368.1 1238590 D 196162 CDS YP_922369.1 119715404 4599342 1239678..1240541 1 NC_008699.1 PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: sme:SMb20130 putative dehydrogenase protein; molybdopterin dehydrogenase 1240541 4599342 Noca_1167 Nocardioides sp. JS614 molybdopterin dehydrogenase YP_922369.1 1239678 D 196162 CDS YP_922370.1 119715405 4599343 1240538..1241059 1 NC_008699.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: chy:CHY_0691 2Fe-2S iron-sulfur cluster binding domain; 2Fe-2S iron-sulfur cluster binding domain-containing protein 1241059 4599343 Noca_1168 Nocardioides sp. JS614 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_922370.1 1240538 D 196162 CDS YP_922371.1 119715406 4599344 1241056..1243371 1 NC_008699.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: rpb:RPB_4416 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; xanthine dehydrogenase, molybdenum binding subunit apoprotein 1243371 4599344 Noca_1169 Nocardioides sp. JS614 xanthine dehydrogenase, molybdenum binding subunit apoprotein YP_922371.1 1241056 D 196162 CDS YP_922372.1 119715407 4599345 1243526..1244791 1 NC_008699.1 PFAM: protein of unknown function UPF0261; KEGG: hma:rrnB0188 hypothetical protein; hypothetical protein 1244791 4599345 Noca_1170 Nocardioides sp. JS614 hypothetical protein YP_922372.1 1243526 D 196162 CDS YP_922373.1 119715408 4599347 1245549..1246484 1 NC_008699.1 PFAM: protein of unknown function DUF849; KEGG: bcn:Bcen_4033 protein of unknown function DUF849; hypothetical protein 1246484 4599347 Noca_1172 Nocardioides sp. JS614 hypothetical protein YP_922373.1 1245549 D 196162 CDS YP_922374.1 119715409 4599348 1246525..1247229 1 NC_008699.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: mta:Moth_0073 transcriptional regulator, GntR family; GntR family transcriptional regulator 1247229 4599348 Noca_1173 Nocardioides sp. JS614 GntR family transcriptional regulator YP_922374.1 1246525 D 196162 CDS YP_922375.1 119715410 4599349 1247423..1248148 1 NC_008699.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: sma:SAV6021 GntR-family transcriptional regulator; GntR family transcriptional regulator 1248148 4599349 Noca_1174 Nocardioides sp. JS614 GntR family transcriptional regulator YP_922375.1 1247423 D 196162 CDS YP_922376.1 119715411 4599350 complement(1248186..1249301) 1 NC_008699.1 PFAM: Transaldolase; KEGG: pac:PPA0454 transaldolase; transaldolase 1249301 4599350 Noca_1175 Nocardioides sp. JS614 transaldolase YP_922376.1 1248186 R 196162 CDS YP_922377.1 119715412 4599351 complement(1249339..1250460) 1 NC_008699.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rxy:Rxyl_1758 alcohol dehydrogenase, zinc-binding protein; alcohol dehydrogenase 1250460 4599351 Noca_1176 Nocardioides sp. JS614 alcohol dehydrogenase YP_922377.1 1249339 R 196162 CDS YP_922378.1 119715413 4599352 complement(1250472..1251278) 1 NC_008699.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: afu:AF1207 2-deoxy-D-gluconate 3-dehydrogenase (KduD); short-chain dehydrogenase/reductase SDR 1251278 4599352 Noca_1177 Nocardioides sp. JS614 short-chain dehydrogenase/reductase SDR YP_922378.1 1250472 R 196162 CDS YP_922379.1 119715414 4599353 complement(1251311..1252183) 1 NC_008699.1 PFAM: beta-lactamase domain protein; KEGG: sco:SCO5091 cyclase; beta-lactamase domain-containing protein 1252183 4599353 Noca_1178 Nocardioides sp. JS614 beta-lactamase domain-containing protein YP_922379.1 1251311 R 196162 CDS YP_922380.1 119715415 4599354 1252578..1253498 1 NC_008699.1 PFAM: inner-membrane translocator; KEGG: hma:rrnAC2468 branched chain amino acid transporter permease protein; inner-membrane translocator 1253498 4599354 Noca_1179 Nocardioides sp. JS614 inner-membrane translocator YP_922380.1 1252578 D 196162 CDS YP_922381.1 119715416 4599280 1253503..1254444 1 NC_008699.1 PFAM: inner-membrane translocator; KEGG: csa:Csal_1419 inner-membrane translocator; inner-membrane translocator 1254444 4599280 Noca_1180 Nocardioides sp. JS614 inner-membrane translocator YP_922381.1 1253503 D 196162 CDS YP_922382.1 119715417 4599281 1254437..1255249 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tfu:Tfu_1184 branched-chain amino acid transport system ATP-binding protein; ABC transporter-like protein 1255249 4599281 Noca_1181 Nocardioides sp. JS614 ABC transporter-like protein YP_922382.1 1254437 D 196162 CDS YP_922383.1 119715418 4599282 1255242..1255952 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_4428 ABC transporter related; ABC transporter-like protein 1255952 4599282 Noca_1182 Nocardioides sp. JS614 ABC transporter-like protein YP_922383.1 1255242 D 196162 CDS YP_922384.1 119715419 4599283 1255989..1257335 1 NC_008699.1 KEGG: bpa:BPP2107 putative ABC transport system, solute-binding protein; ABC-type branched-chain amino acid transport systems periplasmic component-like 1257335 4599283 Noca_1183 Nocardioides sp. JS614 ABC-type branched-chain amino acid transport systems periplasmic component-like YP_922384.1 1255989 D 196162 CDS YP_922385.1 119715420 4599284 1257501..1259279 1 NC_008699.1 PFAM: PEP-utilising enzyme, mobile region; KEGG: bsu:BG14114 similar to pyruvate,water dikinase; PEP-utilizing protein 1259279 4599284 Noca_1184 Nocardioides sp. JS614 PEP-utilizing protein YP_922385.1 1257501 D 196162 CDS YP_922386.1 119715421 4599285 1259324..1260151 1 NC_008699.1 PFAM: pyruvate phosphate dikinase, PEP/pyruvate-binding; KEGG: mka:MK0252 phosphoenolpyruvate synthase/pyruvate phosphate dikinase; pyruvate, water dikinase 1260151 4599285 Noca_1185 Nocardioides sp. JS614 pyruvate, water dikinase YP_922386.1 1259324 D 196162 CDS YP_922387.1 119715422 4599286 1260194..1261036 1 NC_008699.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: afu:AF0091 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (HpcE-1); fumarylacetoacetate (FAA) hydrolase 1261036 4599286 Noca_1186 Nocardioides sp. JS614 fumarylacetoacetate (FAA) hydrolase YP_922387.1 1260194 D 196162 CDS YP_922388.1 119715423 4599287 1261084..1261377 1 NC_008699.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: rxy:Rxyl_2236 antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 1261377 4599287 Noca_1187 Nocardioides sp. JS614 antibiotic biosynthesis monooxygenase YP_922388.1 1261084 D 196162 CDS YP_922389.1 119715424 4599288 1261422..1262807 1 NC_008699.1 PFAM: aldehyde dehydrogenase; KEGG: rha:RHA1_ro00658 succinate-semialdehyde dehydrogenase (NAD(P)+); aldehyde dehydrogenase 1262807 4599288 Noca_1188 Nocardioides sp. JS614 aldehyde dehydrogenase YP_922389.1 1261422 D 196162 CDS YP_922390.1 119715425 4599289 complement(1262969..1264243) 1 NC_008699.1 PFAM: tRNA synthetase, class II (D, K and N); nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: dge:Dgeo_0796 aspartyl-tRNA synthetase; aspartyl-tRNA synthetase 1264243 4599289 Noca_1189 Nocardioides sp. JS614 aspartyl-tRNA synthetase YP_922390.1 1262969 R 196162 CDS YP_922391.1 119715426 4599290 1264447..1265421 1 NC_008699.1 PFAM: conserved hypothetical protein 341; KEGG: sco:SCO4737 integral membrane protein; hypothetical protein 1265421 4599290 Noca_1190 Nocardioides sp. JS614 hypothetical protein YP_922391.1 1264447 D 196162 CDS YP_922392.1 119715427 4599291 complement(1265440..1266330) 1 NC_008699.1 PFAM: GCN5-related N-acetyltransferase; FR47 domain protein; KEGG: sma:SAV3130 acetyltransferase; N-acetyltransferase GCN5 1266330 4599291 Noca_1191 Nocardioides sp. JS614 N-acetyltransferase GCN5 YP_922392.1 1265440 R 196162 CDS YP_922393.1 119715428 4599292 1266443..1266769 1 NC_008699.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: sco:SCO5135 ferredoxin; 4Fe-4S ferredoxin 1266769 4599292 Noca_1192 Nocardioides sp. JS614 4Fe-4S ferredoxin YP_922393.1 1266443 D 196162 CDS YP_922394.1 119715429 4599293 1267033..1267890 1 NC_008699.1 catalyzes the formation of N-succinyl-LL-2,6-diaminopimelate from N-succinyl-L-2-amino-6-oxopimelate in lysine biosynthesis; N-succinyldiaminopimelate aminotransferase 1267890 4599293 Noca_1193 Nocardioides sp. JS614 N-succinyldiaminopimelate aminotransferase YP_922394.1 1267033 D 196162 CDS YP_922395.1 119715430 4599294 complement(1268023..1268985) 1 NC_008699.1 KEGG: sma:SAV3126 hypothetical protein; hypothetical protein 1268985 4599294 Noca_1194 Nocardioides sp. JS614 hypothetical protein YP_922395.1 1268023 R 196162 CDS YP_922396.1 119715431 4599295 complement(1269039..1270001) 1 NC_008699.1 KEGG: rha:RHA1_ro05962 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 1270001 4599295 Noca_1195 Nocardioides sp. JS614 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase YP_922396.1 1269039 R 196162 CDS YP_922397.1 119715432 4599296 complement(1270026..1270550) 1 NC_008699.1 PFAM: protein of unknown function DUF664; KEGG: sma:SAV7047 hypothetical protein; hypothetical protein 1270550 4599296 Noca_1196 Nocardioides sp. JS614 hypothetical protein YP_922397.1 1270026 R 196162 CDS YP_922398.1 119715433 4599297 1270657..1271232 1 NC_008699.1 PFAM: protein of unknown function DUF820; KEGG: lbl:LBL_0718 hypothetical protein; hypothetical protein 1271232 4599297 Noca_1197 Nocardioides sp. JS614 hypothetical protein YP_922398.1 1270657 D 196162 CDS YP_922399.1 119715434 4599298 1271459..1274644 1 NC_008699.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase 1274644 ileS 4599298 ileS Nocardioides sp. JS614 isoleucyl-tRNA synthetase YP_922399.1 1271459 D 196162 CDS YP_922400.1 119715435 4599299 complement(1274820..1275665) 1 NC_008699.1 PFAM: luciferase family protein; KEGG: mmc:Mmcs_4324 luciferase-like protein; luciferase family protein 1275665 4599299 Noca_1199 Nocardioides sp. JS614 luciferase family protein YP_922400.1 1274820 R 196162 CDS YP_922401.1 119715436 4599300 1275728..1276792 1 NC_008699.1 catalyzes the formation of succinate and diaminoheptanedioate from succinyldiaminoheptanedioate; succinyl-diaminopimelate desuccinylase 1276792 4599300 Noca_1200 Nocardioides sp. JS614 succinyl-diaminopimelate desuccinylase YP_922401.1 1275728 D 196162 CDS YP_922402.1 119715437 4599301 1276794..1277525 1 NC_008699.1 PFAM: conserved hypothetical protein 730; KEGG: sco:SCO5140 hypothetical protein; hypothetical protein 1277525 4599301 Noca_1201 Nocardioides sp. JS614 hypothetical protein YP_922402.1 1276794 D 196162 CDS YP_922403.1 119715438 4599302 1277532..1277834 1 NC_008699.1 KEGG: pac:PPA0637 hypothetical protein; hypothetical protein 1277834 4599302 Noca_1202 Nocardioides sp. JS614 hypothetical protein YP_922403.1 1277532 D 196162 CDS YP_922404.1 119715439 4599303 1277849..1278274 1 NC_008699.1 hypothetical protein 1278274 4599303 Noca_1203 Nocardioides sp. JS614 hypothetical protein YP_922404.1 1277849 D 196162 CDS YP_922405.1 119715440 4599304 1278286..1279074 1 NC_008699.1 PFAM: peptidase M14, carboxypeptidase A; KEGG: cya:CYA_2877 zinc carboxypeptidase; peptidase M14, carboxypeptidase A 1279074 4599304 Noca_1204 Nocardioides sp. JS614 peptidase M14, carboxypeptidase A YP_922405.1 1278286 D 196162 CDS YP_922406.1 119715441 4599305 complement(1279129..1279923) 1 NC_008699.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: sma:SAV3120 putative enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase 1279923 4599305 Noca_1205 Nocardioides sp. JS614 enoyl-CoA hydratase YP_922406.1 1279129 R 196162 CDS YP_922407.1 119715442 4599306 complement(1279978..1280754) 1 NC_008699.1 PFAM: PaaX domain protein; PaaX domain protein, C-terminal domain; KEGG: sth:STH211 transcriptional regulatory protein, repressor-type; PaaX domain-containing protein, C- domain 1280754 4599306 Noca_1206 Nocardioides sp. JS614 PaaX domain-containing protein, C- domain YP_922407.1 1279978 R 196162 CDS YP_922408.1 119715443 4599307 1281070..1282653 1 NC_008699.1 PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: tfu:Tfu_0503 leucyl aminopeptidase; leucyl aminopeptidase 1282653 4599307 Noca_1207 Nocardioides sp. JS614 leucyl aminopeptidase YP_922408.1 1281070 D 196162 CDS YP_922409.1 119715444 4599308 1282650..1282988 1 NC_008699.1 hypothetical protein 1282988 4599308 Noca_1208 Nocardioides sp. JS614 hypothetical protein YP_922409.1 1282650 D 196162 CDS YP_922410.1 119715445 4599309 complement(1283111..1283608) 1 NC_008699.1 PFAM: O-methyltransferase, family 3; Methyltransferase type 11; KEGG: fal:FRAAL6092 methyltransferase (O-methyltransferase); O-methyltransferase family protein 1283608 4599309 Noca_1209 Nocardioides sp. JS614 O-methyltransferase family protein YP_922410.1 1283111 R 196162 CDS YP_922411.1 119715446 4599310 1283940..1284632 1 NC_008699.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in M. tuberculosis this protein is involved in heat shock, oxidative stress and virulence; RNA polymerase sigma factor SigE 1284632 4599310 Noca_1210 Nocardioides sp. JS614 RNA polymerase sigma factor SigE YP_922411.1 1283940 D 196162 CDS YP_922412.1 119715447 4599311 1284629..1285105 1 NC_008699.1 hypothetical protein 1285105 4599311 Noca_1211 Nocardioides sp. JS614 hypothetical protein YP_922412.1 1284629 D 196162 CDS YP_922413.1 119715448 4599312 1285152..1286567 1 NC_008699.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: fra:Francci3_0069 peptidase S1 and S6, chymotrypsin/Hap; peptidase S1 and S6, chymotrypsin/Hap 1286567 4599312 Noca_1212 Nocardioides sp. JS614 peptidase S1 and S6, chymotrypsin/Hap YP_922413.1 1285152 D 196162 CDS YP_922414.1 119715449 4599313 complement(1286719..1286964) 1 NC_008699.1 TIGRFAM: DNA binding domain, excisionase family; PFAM: regulatory protein, MerR; KEGG: fra:Francci3_0771 putative transcriptional regulator; DNA binding domain-containing protein 1286964 4599313 Noca_1213 Nocardioides sp. JS614 DNA binding domain-containing protein YP_922414.1 1286719 R 196162 CDS YP_922415.1 119715450 4599314 1287101..1287775 1 NC_008699.1 KEGG: fal:FRAAL1311 hypothetical protein; putative signal peptide; putative signal peptide 1287775 4599314 Noca_1214 Nocardioides sp. JS614 putative signal peptide YP_922415.1 1287101 D 196162 CDS YP_922416.1 119715451 4599264 1287779..1289092 1 NC_008699.1 KEGG: fal:FRAAL1312 hypothetical protein; hypothetical protein 1289092 4599264 Noca_1215 Nocardioides sp. JS614 hypothetical protein YP_922416.1 1287779 D 196162 CDS YP_922417.1 119715452 4599265 complement(1289071..1290399) 1 NC_008699.1 KEGG: mmc:Mmcs_5112 hypothetical protein; hypothetical protein 1290399 4599265 Noca_1216 Nocardioides sp. JS614 hypothetical protein YP_922417.1 1289071 R 196162 CDS YP_922418.1 119715453 4599266 complement(1290412..1290777) 1 NC_008699.1 KEGG: rha:RHA1_ro02410 hypothetical protein; hypothetical protein 1290777 4599266 Noca_1217 Nocardioides sp. JS614 hypothetical protein YP_922418.1 1290412 R 196162 CDS YP_922419.1 119715454 4599267 1290899..1292350 1 NC_008699.1 PFAM: protein of unknown function UPF0089; KEGG: rha:RHA1_ro06332 hypothetical protein; diacylglycerol O-acyltransferase 1292350 4599267 Noca_1218 Nocardioides sp. JS614 diacylglycerol O-acyltransferase YP_922419.1 1290899 D 196162 CDS YP_922420.1 119715455 4599268 1292347..1292703 1 NC_008699.1 KEGG: tfu:Tfu_2483 hypothetical protein; hypothetical protein 1292703 4599268 Noca_1219 Nocardioides sp. JS614 hypothetical protein YP_922420.1 1292347 D 196162 CDS YP_922421.1 119715456 4599269 1292731..1294377 1 NC_008699.1 TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: tfu:Tfu_0433 delta-1-pyrroline-5-carboxylate dehydrogenase 1; delta-1-pyrroline-5-carboxylate dehydrogenase 1294377 4599269 Noca_1220 Nocardioides sp. JS614 delta-1-pyrroline-5-carboxylate dehydrogenase YP_922421.1 1292731 D 196162 CDS YP_922422.1 119715457 4599270 1294388..1294606 1 NC_008699.1 hypothetical protein 1294606 4599270 Noca_1221 Nocardioides sp. JS614 hypothetical protein YP_922422.1 1294388 D 196162 CDS YP_922423.1 119715458 4599271 complement(1294591..1295073) 1 NC_008699.1 KEGG: rha:RHA1_ro02087 hypothetical protein; hypothetical protein 1295073 4599271 Noca_1222 Nocardioides sp. JS614 hypothetical protein YP_922423.1 1294591 R 196162 CDS YP_922424.1 119715459 4599272 complement(1295073..1295564) 1 NC_008699.1 KEGG: pac:PPA1330 hypothetical protein; hypothetical protein 1295564 4599272 Noca_1223 Nocardioides sp. JS614 hypothetical protein YP_922424.1 1295073 R 196162 CDS YP_922425.1 119715460 4599273 1295671..1296474 1 NC_008699.1 PFAM: tryptophan 2,3-dioxygenase; KEGG: aba:Acid345_0682 tryptophan 2,3-dioxygenase; tryptophan 2,3-dioxygenase 1296474 4599273 Noca_1224 Nocardioides sp. JS614 tryptophan 2,3-dioxygenase YP_922425.1 1295671 D 196162 CDS YP_922426.1 119715461 4599274 1296510..1301429 1 NC_008699.1 PFAM: NAD-glutamate dehydrogenase; KEGG: sco:SCO2999 hypothetical protein; glutamate dehydrogenase 1301429 4599274 Noca_1225 Nocardioides sp. JS614 glutamate dehydrogenase YP_922426.1 1296510 D 196162 CDS YP_922427.1 119715462 4599275 1301489..1303276 1 NC_008699.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: mmc:Mmcs_4445 ABC transporter related; ABC transporter 1303276 4599275 Noca_1226 Nocardioides sp. JS614 ABC transporter YP_922427.1 1301489 D 196162 CDS YP_922428.1 119715463 4599276 1303273..1305132 1 NC_008699.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: mmc:Mmcs_4444 ABC transporter related; ABC transporter-like protein 1305132 4599276 Noca_1227 Nocardioides sp. JS614 ABC transporter-like protein YP_922428.1 1303273 D 196162 CDS YP_922429.1 119715464 4599277 1305288..1306688 1 NC_008699.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 1306688 4599277 Noca_1228 Nocardioides sp. JS614 amidase YP_922429.1 1305288 D 196162 CDS YP_922430.1 119715465 4599278 1306688..1306885 1 NC_008699.1 hypothetical protein 1306885 4599278 Noca_1229 Nocardioides sp. JS614 hypothetical protein YP_922430.1 1306688 D 196162 CDS YP_922431.1 119715466 4599279 complement(1307023..1307910) 1 NC_008699.1 KEGG: reu:Reut_B3920 hypothetical protein; hypothetical protein 1307910 4599279 Noca_1230 Nocardioides sp. JS614 hypothetical protein YP_922431.1 1307023 R 196162 CDS YP_922432.1 119715467 4599227 complement(1307960..1308550) 1 NC_008699.1 PFAM: regulatory protein, TetR; KEGG: ade:Adeh_3099 transcriptional regulator, TetR family; TetR family transcriptional regulator 1308550 4599227 Noca_1231 Nocardioides sp. JS614 TetR family transcriptional regulator YP_922432.1 1307960 R 196162 CDS YP_922433.1 119715468 4599228 1308579..1309496 1 NC_008699.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro06221 possible dehydrogenase; short-chain dehydrogenase/reductase SDR 1309496 4599228 Noca_1232 Nocardioides sp. JS614 short-chain dehydrogenase/reductase SDR YP_922433.1 1308579 D 196162 CDS YP_922434.1 119715469 4599229 complement(1309598..1310359) 1 NC_008699.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: fra:Francci3_0182 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1310359 4599229 Noca_1233 Nocardioides sp. JS614 glyoxalase/bleomycin resistance protein/dioxygenase YP_922434.1 1309598 R 196162 CDS YP_922435.1 119715470 4599230 complement(1310489..1311484) 1 NC_008699.1 PFAM: Ku domain protein; KEGG: mpa:MAP0875c hypothetical protein; DNA end-binding protein Ku 1311484 4599230 Noca_1234 Nocardioides sp. JS614 DNA end-binding protein Ku YP_922435.1 1310489 R 196162 CDS YP_922436.1 119715471 4599231 1311569..1312504 1 NC_008699.1 PFAM: ATP dependent DNA ligase; KEGG: fal:FRAAL4382 hypothetical protein; ATP dependent DNA ligase 1312504 4599231 Noca_1235 Nocardioides sp. JS614 ATP dependent DNA ligase YP_922436.1 1311569 D 196162 CDS YP_922437.1 119715472 4599232 1312504..1313226 1 NC_008699.1 KEGG: sma:SAV6775 secreted protein; secreted protein 1313226 4599232 Noca_1236 Nocardioides sp. JS614 secreted protein YP_922437.1 1312504 D 196162 CDS YP_922438.1 119715473 4599233 1313226..1314140 1 NC_008699.1 KEGG: mmc:Mmcs_4352 ATP dependent DNA ligase; ATP dependent DNA ligase 1314140 4599233 Noca_1237 Nocardioides sp. JS614 ATP dependent DNA ligase YP_922438.1 1313226 D 196162 CDS YP_922439.1 119715474 4599234 1314298..1314819 1 NC_008699.1 hypothetical protein 1314819 4599234 Noca_1238 Nocardioides sp. JS614 hypothetical protein YP_922439.1 1314298 D 196162 CDS YP_922440.1 119715475 4599235 1315048..1315659 1 NC_008699.1 PFAM: peptidase S24, S26A and S26B; KEGG: mka:MK1031 type I signal peptidase; peptidase S24, S26A and S26B 1315659 4599235 Noca_1239 Nocardioides sp. JS614 peptidase S24, S26A and S26B YP_922440.1 1315048 D 196162 CDS YP_922441.1 119715476 4599236 1315692..1316396 1 NC_008699.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sma:SAV3481 two-component system response regulator; response regulator receiver 1316396 4599236 Noca_1240 Nocardioides sp. JS614 response regulator receiver YP_922441.1 1315692 D 196162 CDS YP_922442.1 119715477 4599237 1316389..1317603 1 NC_008699.1 PFAM: histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: tfu:Tfu_2550 ATP-binding region, ATPase-like:histidine kinase A, N-terminal; histidine kinase 1317603 4599237 Noca_1241 Nocardioides sp. JS614 histidine kinase YP_922442.1 1316389 D 196162 CDS YP_922443.1 119715478 4599238 1317637..1318443 1 NC_008699.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sco:SCO2843 putative N-acetylglucosamine-6-phosphate deacetylase; HAD family hydrolase 1318443 4599238 Noca_1242 Nocardioides sp. JS614 HAD family hydrolase YP_922443.1 1317637 D 196162 CDS YP_922444.1 119715479 4599239 1318861..1319370 1 NC_008699.1 PFAM: NLP/P60 protein; KEGG: sco:SCO1240 NLP/P60 family protein (secreted protein); NLP/P60 protein 1319370 4599239 Noca_1243 Nocardioides sp. JS614 NLP/P60 protein YP_922444.1 1318861 D 196162 CDS YP_922445.1 119715480 4599240 complement(1319387..1320022) 1 NC_008699.1 hypothetical protein 1320022 4599240 Noca_1244 Nocardioides sp. JS614 hypothetical protein YP_922445.1 1319387 R 196162 CDS YP_922446.1 119715481 4599241 1320111..1320590 1 NC_008699.1 hypothetical protein 1320590 4599241 Noca_1245 Nocardioides sp. JS614 hypothetical protein YP_922446.1 1320111 D 196162 CDS YP_922447.1 119715482 4599242 1320587..1321903 1 NC_008699.1 KEGG: ath:At4g01985 expressed protein; hypothetical protein 1321903 4599242 Noca_1246 Nocardioides sp. JS614 hypothetical protein YP_922447.1 1320587 D 196162 CDS YP_922448.1 119715483 4599243 1322024..1323577 1 NC_008699.1 Converts oxaloacetate to phosphoenolpyruvate using ATP as an energy source; oxaloacetate decarboxylase 1323577 4599243 Noca_1247 Nocardioides sp. JS614 oxaloacetate decarboxylase YP_922448.1 1322024 D 196162 CDS YP_922449.1 119715484 4599244 1323588..1325156 1 NC_008699.1 PFAM: carboxyl transferase; KEGG: cdi:DIP0740 methylmalonyl-CoA decarboxylase, alpha-subunit; carboxyl transferase 1325156 4599244 Noca_1248 Nocardioides sp. JS614 carboxyl transferase YP_922449.1 1323588 D 196162 CDS YP_922450.1 119715485 4599245 1325168..1325422 1 NC_008699.1 KEGG: cdi:DIP0741 hypothetical protein; hypothetical protein 1325422 4599245 Noca_1249 Nocardioides sp. JS614 hypothetical protein YP_922450.1 1325168 D 196162 CDS YP_922451.1 119715486 4599246 1325452..1325817 1 NC_008699.1 PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: cdi:DIP0742 putative decarboxylase; biotin/lipoyl attachment domain-containing protein 1325817 4599246 Noca_1250 Nocardioides sp. JS614 biotin/lipoyl attachment domain-containing protein YP_922451.1 1325452 D 196162 CDS YP_922452.1 119715487 4599247 complement(1325946..1327439) 1 NC_008699.1 PFAM: Fibronectin, type III domain protein; KEGG: mbo:Mb0063 possible cellulase CelA1 (endoglucanase) (endo-1,4-beta-glucanase) (fi-cmcase) (carboxymethyl cellulase); fibronectin, type III domain-containing protein 1327439 4599247 Noca_1251 Nocardioides sp. JS614 fibronectin, type III domain-containing protein YP_922452.1 1325946 R 196162 CDS YP_922453.1 119715488 4599248 1327723..1329030 1 NC_008699.1 PFAM: type II secretion system protein E; KEGG: fal:FRAAL1319 putative type II/type IV pathway secretion protein; type II secretion system protein E 1329030 4599248 Noca_1252 Nocardioides sp. JS614 type II secretion system protein E YP_922453.1 1327723 D 196162 CDS YP_922454.1 119715489 4599249 1329030..1329884 1 NC_008699.1 PFAM: type II secretion system protein; KEGG: fal:FRAAL1320 hypothetical protein; type II secretion system protein 1329884 4599249 Noca_1253 Nocardioides sp. JS614 type II secretion system protein YP_922454.1 1329030 D 196162 CDS YP_922455.1 119715490 4599250 1329881..1330819 1 NC_008699.1 PFAM: type II secretion system protein; KEGG: fal:FRAAL1321 hypothetical protein; type II secretion system protein 1330819 4599250 Noca_1254 Nocardioides sp. JS614 type II secretion system protein YP_922455.1 1329881 D 196162 CDS YP_922456.1 119715491 4599251 1330863..1331069 1 NC_008699.1 KEGG: fra:Francci3_0782 hypothetical protein; hypothetical protein 1331069 4599251 Noca_1255 Nocardioides sp. JS614 hypothetical protein YP_922456.1 1330863 D 196162 CDS YP_922457.1 119715492 4599252 1331069..1331452 1 NC_008699.1 PFAM: TadE family protein; KEGG: fal:FRAAL1323 hypothetical protein; TadE family protein 1331452 4599252 Noca_1256 Nocardioides sp. JS614 TadE family protein YP_922457.1 1331069 D 196162 CDS YP_922458.1 119715493 4599253 1331449..1331913 1 NC_008699.1 KEGG: fra:Francci3_0784 hypothetical protein; hypothetical protein 1331913 4599253 Noca_1257 Nocardioides sp. JS614 hypothetical protein YP_922458.1 1331449 D 196162 CDS YP_922459.1 119715494 4599254 1331900..1332349 1 NC_008699.1 hypothetical protein 1332349 4599254 Noca_1258 Nocardioides sp. JS614 hypothetical protein YP_922459.1 1331900 D 196162 CDS YP_922460.1 119715495 4599255 complement(1332360..1334564) 1 NC_008699.1 KEGG: bba:Bd1210 hypothetical protein; hypothetical protein 1334564 4599255 Noca_1259 Nocardioides sp. JS614 hypothetical protein YP_922460.1 1332360 R 196162 CDS YP_922461.1 119715496 4599256 1334655..1335149 1 NC_008699.1 PFAM: Allergen V5/Tpx-1 family protein; KEGG: cac:CAC2230 uncharacterized protein of PR1 family, YkwD B.subtilis ortholog; Allergen V5/Tpx-1 family protein 1335149 4599256 Noca_1260 Nocardioides sp. JS614 Allergen V5/Tpx-1 family protein YP_922461.1 1334655 D 196162 CDS YP_922462.1 119715497 4599257 complement(1335192..1335554) 1 NC_008699.1 hypothetical protein 1335554 4599257 Noca_1261 Nocardioides sp. JS614 hypothetical protein YP_922462.1 1335192 R 196162 CDS YP_922463.1 119715498 4599258 1335593..1337560 1 NC_008699.1 KEGG: bxe:Bxe_A2026 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase 1337560 4599258 Noca_1262 Nocardioides sp. JS614 PAS/PAC sensor hybrid histidine kinase YP_922463.1 1335593 D 196162 CDS YP_922464.1 119715499 4599259 1337547..1338395 1 NC_008699.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; KEGG: sma:SAV3185 magnesium or manganese-dependent protein phosphatase; response regulator receiver 1338395 4599259 Noca_1263 Nocardioides sp. JS614 response regulator receiver YP_922464.1 1337547 D 196162 CDS YP_922465.1 119715500 4599260 1338433..1339560 1 NC_008699.1 TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: mpa:MAP3175c peptide chain release factor RF-2; peptide chain release factor 2 1339560 4599260 Noca_1264 Nocardioides sp. JS614 peptide chain release factor 2 YP_922465.1 1338433 D 196162 CDS YP_922466.1 119715501 4599261 1339602..1340498 1 NC_008699.1 KEGG: sma:SAV1587 hypothetical protein; hypothetical protein 1340498 4599261 Noca_1265 Nocardioides sp. JS614 hypothetical protein YP_922466.1 1339602 D 196162 CDS YP_922467.1 119715502 4599262 complement(1340525..1341166) 1 NC_008699.1 hypothetical protein 1341166 4599262 Noca_1266 Nocardioides sp. JS614 hypothetical protein YP_922467.1 1340525 R 196162 CDS YP_922468.1 119715503 4599263 1341192..1343129 1 NC_008699.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: dra:DR0933 alpha-amlyase; alpha amylase 1343129 4599263 Noca_1267 Nocardioides sp. JS614 alpha amylase YP_922468.1 1341192 D 196162 CDS YP_922469.1 119715504 4598889 1343154..1343843 1 NC_008699.1 KEGG: sma:SAV5104 putative cell division ATP-binding protein; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; cell division ATP-binding protein FtsE 1343843 4598889 Noca_1268 Nocardioides sp. JS614 cell division ATP-binding protein FtsE YP_922469.1 1343154 D 196162 CDS YP_922470.1 119715505 4598890 1343898..1344809 1 NC_008699.1 PFAM: protein of unknown function DUF214; KEGG: pac:PPA1352 cell division protein; cell division protein FtsX 1344809 4598890 Noca_1269 Nocardioides sp. JS614 cell division protein FtsX YP_922470.1 1343898 D 196162 CDS YP_922471.1 119715506 4598891 1344865..1346124 1 NC_008699.1 PFAM: peptidase M23B; KEGG: ava:Ava_0183 peptidase M23B; peptidase M23B 1346124 4598891 Noca_1270 Nocardioides sp. JS614 peptidase M23B YP_922471.1 1344865 D 196162 CDS YP_922472.1 119715507 4598892 1346219..1347061 1 NC_008699.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap; KEGG: dme:Dmel_CG4927 CG4927; peptidase S1 and S6, chymotrypsin/Hap 1347061 4598892 Noca_1271 Nocardioides sp. JS614 peptidase S1 and S6, chymotrypsin/Hap YP_922472.1 1346219 D 196162 CDS YP_922473.1 119715508 4598893 1347172..1347651 1 NC_008699.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 1347651 smpB 4598893 smpB Nocardioides sp. JS614 SsrA-binding protein YP_922473.1 1347172 D 196162 CDS YP_922474.1 119715509 4598894 1347644..1348570 1 NC_008699.1 PFAM: amidohydrolase 2; KEGG: nfa:nfa25480 putative amidohydrolase; amidohydrolase 2 1348570 4598894 Noca_1273 Nocardioides sp. JS614 amidohydrolase 2 YP_922474.1 1347644 D 196162 CDS YP_922475.1 119715510 4598896 1349218..1349559 1 NC_008699.1 PFAM: regulatory protein, ArsR; KEGG: mlo:mll3559 probable transcription regulator; ArsR family transcriptional regulator 1349559 4598896 Noca_1274 Nocardioides sp. JS614 ArsR family transcriptional regulator YP_922475.1 1349218 D 196162 CDS YP_922476.1 119715511 4598897 1349556..1350215 1 NC_008699.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: fal:FRAAL4597 putative DNA binding protein; deaminase-reductase domain-containing protein 1350215 4598897 Noca_1275 Nocardioides sp. JS614 deaminase-reductase domain-containing protein YP_922476.1 1349556 D 196162 CDS YP_922477.1 119715512 4598898 1350212..1350673 1 NC_008699.1 PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: mlo:mll3558 hypothetical protein; activator of Hsp90 ATPase 1 family protein 1350673 4598898 Noca_1276 Nocardioides sp. JS614 activator of Hsp90 ATPase 1 family protein YP_922477.1 1350212 D 196162 CDS YP_922478.1 119715513 4598899 complement(1350681..1351178) 1 NC_008699.1 hypothetical protein 1351178 4598899 Noca_1277 Nocardioides sp. JS614 hypothetical protein YP_922478.1 1350681 R 196162 CDS YP_922479.1 119715514 4598900 1351261..1351548 1 NC_008699.1 hypothetical protein 1351548 4598900 Noca_1278 Nocardioides sp. JS614 hypothetical protein YP_922479.1 1351261 D 196162 CDS YP_922480.1 119715515 4598901 complement(1351987..1353303) 1 NC_008699.1 hypothetical protein 1353303 4598901 Noca_1279 Nocardioides sp. JS614 hypothetical protein YP_922480.1 1351987 R 196162 CDS YP_922481.1 119715516 4598902 complement(1353339..1354583) 1 NC_008699.1 SMART: HNH nuclease; KEGG: fal:FRAAL3997 hypothetical protein; HNH nuclease 1354583 4598902 Noca_1280 Nocardioides sp. JS614 HNH nuclease YP_922481.1 1353339 R 196162 CDS YP_922482.1 119715517 4598903 1355216..1357189 1 NC_008699.1 PFAM: peptidase C11, clostripain; KEGG: mac:MA4003 clostripain; peptidase C11, clostripain 1357189 4598903 Noca_1281 Nocardioides sp. JS614 peptidase C11, clostripain YP_922482.1 1355216 D 196162 CDS YP_922483.1 119715518 4598904 1357273..1358670 1 NC_008699.1 PFAM: Ig domain protein, group 1 domain protein; KEGG: mpa:MAP3163 hypothetical protein; Ig domain-containing protein 1358670 4598904 Noca_1282 Nocardioides sp. JS614 Ig domain-containing protein YP_922483.1 1357273 D 196162 CDS YP_922484.1 119715519 4598905 1358690..1358971 1 NC_008699.1 KEGG: rxy:Rxyl_2608 transglycosylase-associated protein; transglycosylase-associated protein 1358971 4598905 Noca_1283 Nocardioides sp. JS614 transglycosylase-associated protein YP_922484.1 1358690 D 196162 CDS YP_922485.1 119715520 4598906 1358968..1359396 1 NC_008699.1 PFAM: histidine triad (HIT) protein; KEGG: sus:Acid_2826 histidine triad (HIT) protein; histidine triad (HIT) protein 1359396 4598906 Noca_1284 Nocardioides sp. JS614 histidine triad (HIT) protein YP_922485.1 1358968 D 196162 CDS YP_922486.1 119715521 4598907 1359498..1360265 1 NC_008699.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: sma:SAV7008 putative 3-oxoacyl-ACP reductase; short-chain dehydrogenase/reductase SDR 1360265 4598907 Noca_1285 Nocardioides sp. JS614 short-chain dehydrogenase/reductase SDR YP_922486.1 1359498 D 196162 CDS YP_922487.1 119715522 4598908 1360369..1361397 1 NC_008699.1 KEGG: sco:SCO6705 secreted protein; hypothetical protein 1361397 4598908 Noca_1286 Nocardioides sp. JS614 hypothetical protein YP_922487.1 1360369 D 196162 CDS YP_922488.1 119715523 4598909 complement(1361432..1362136) 1 NC_008699.1 PFAM: regulatory protein, TetR; KEGG: nfa:nfa30770 putative transcriptional regulator; regulatory protein TetR 1362136 4598909 Noca_1287 Nocardioides sp. JS614 regulatory protein TetR YP_922488.1 1361432 R 196162 CDS YP_922489.1 119715524 4598910 1362275..1362811 1 NC_008699.1 hypothetical protein 1362811 4598910 Noca_1288 Nocardioides sp. JS614 hypothetical protein YP_922489.1 1362275 D 196162 CDS YP_922490.1 119715525 4598911 1362942..1363517 1 NC_008699.1 PFAM: protein of unknown function DUF179; KEGG: sma:SAV5129 putative transcriptional regulator; hypothetical protein 1363517 4598911 Noca_1289 Nocardioides sp. JS614 hypothetical protein YP_922490.1 1362942 D 196162 CDS YP_922491.1 119715526 4598912 1363598..1363921 1 NC_008699.1 KEGG: pac:PPA1685 hypothetical protein; hypothetical protein 1363921 4598912 Noca_1290 Nocardioides sp. JS614 hypothetical protein YP_922491.1 1363598 D 196162 CDS YP_922492.1 119715527 4598913 1363918..1365714 1 NC_008699.1 PFAM: type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sma:SAV5140 protein involving differentiation; type III restriction enzyme, res subunit 1365714 4598913 Noca_1291 Nocardioides sp. JS614 type III restriction enzyme, res subunit YP_922492.1 1363918 D 196162 CDS YP_922493.1 119715528 4598914 1365690..1366370 1 NC_008699.1 SMART: regulatory proteins, IclR; KEGG: sma:SAV5141 differentiation regulon (IclR-family transcriptional regulator); regulatory proteins IclR 1366370 4598914 Noca_1292 Nocardioides sp. JS614 regulatory proteins IclR YP_922493.1 1365690 D 196162 CDS YP_922494.1 119715529 4598915 complement(1366420..1368048) 1 NC_008699.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: aba:Acid345_1672 methyl-accepting chemotaxis sensory transducer; chemotaxis sensory transducer 1368048 4598915 Noca_1293 Nocardioides sp. JS614 chemotaxis sensory transducer YP_922494.1 1366420 R 196162 CDS YP_922495.1 119715530 4598916 complement(1368127..1368594) 1 NC_008699.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: sco:SCO2928 AsnC-family transcriptional regulator; AsnC family transcriptional regulator 1368594 4598916 Noca_1294 Nocardioides sp. JS614 AsnC family transcriptional regulator YP_922495.1 1368127 R 196162 CDS YP_922496.1 119715531 4598917 1368677..1369870 1 NC_008699.1 KEGG: rha:RHA1_ro03041 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 1369870 4598917 Noca_1295 Nocardioides sp. JS614 4-hydroxyphenylpyruvate dioxygenase YP_922496.1 1368677 D 196162 CDS YP_922497.1 119715532 4598918 complement(1370039..1371259) 1 NC_008699.1 PFAM: major facilitator superfamily MFS_1; KEGG: nfa:nfa4770 putative transporter; major facilitator transporter 1371259 4598918 Noca_1296 Nocardioides sp. JS614 major facilitator transporter YP_922497.1 1370039 R 196162 CDS YP_922498.1 119715533 4598919 complement(1371256..1371729) 1 NC_008699.1 PFAM: regulatory protein, MarR; KEGG: rha:RHA1_ro05520 possible transcriptional regulator, MarR family; regulatory protein MarR 1371729 4598919 Noca_1297 Nocardioides sp. JS614 regulatory protein MarR YP_922498.1 1371256 R 196162 CDS YP_922499.1 119715534 4598920 1371790..1372326 1 NC_008699.1 PFAM: protein of unknown function DUF1697; KEGG: lic:LIC10638 hypothetical protein; hypothetical protein 1372326 4598920 Noca_1298 Nocardioides sp. JS614 hypothetical protein YP_922499.1 1371790 D 196162 CDS YP_922500.1 119715535 4598921 1372380..1374227 1 NC_008699.1 PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: sco:SCO2015 putative nucleotidase; 5'-nucleotidase domain-containing protein 1374227 4598921 Noca_1299 Nocardioides sp. JS614 5'-nucleotidase domain-containing protein YP_922500.1 1372380 D 196162 CDS YP_922501.1 119715536 4598922 complement(1374279..1375049) 1 NC_008699.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rha:RHA1_ro03948 possible enoyl-CoA hydratase; short chain enoyl-CoA hydratase / enoyl-CoA hydratase 1375049 4598922 Noca_1300 Nocardioides sp. JS614 short chain enoyl-CoA hydratase / enoyl-CoA hydratase YP_922501.1 1374279 R 196162 CDS YP_922502.1 119715537 4598923 complement(1375042..1375626) 1 NC_008699.1 PFAM: isochorismatase hydrolase; KEGG: mmc:Mmcs_5114 isochorismatase hydrolase; isochorismatase hydrolase 1375626 4598923 Noca_1301 Nocardioides sp. JS614 isochorismatase hydrolase YP_922502.1 1375042 R 196162 CDS YP_922503.1 119715538 4598924 complement(1375640..1376842) 1 NC_008699.1 PFAM: ROK family protein; KEGG: sco:SCO6008 probable transcriptional repressor protein; ROK family protein 1376842 4598924 Noca_1302 Nocardioides sp. JS614 ROK family protein YP_922503.1 1375640 R 196162 CDS YP_922504.1 119715539 4598925 1377044..1378342 1 NC_008699.1 PFAM: extracellular solute-binding protein, family 1; KEGG: pac:PPA1966 bacterial extracellular solute-binding protein; extracellular solute-binding protein 1378342 4598925 Noca_1303 Nocardioides sp. JS614 extracellular solute-binding protein YP_922504.1 1377044 D 196162 CDS YP_922505.1 119715540 4598926 1378428..1379324 1 NC_008699.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pac:PPA1965 binding-protein-dependent transport permease; binding-protein-dependent transport system inner membrane protein 1379324 4598926 Noca_1304 Nocardioides sp. JS614 binding-protein-dependent transport system inner membrane protein YP_922505.1 1378428 D 196162 CDS YP_922506.1 119715541 4598543 1379321..1380208 1 NC_008699.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pac:PPA1964 binding-protein-dependent transport permease; binding-protein-dependent transport system inner membrane protein 1380208 4598543 Noca_1305 Nocardioides sp. JS614 binding-protein-dependent transport system inner membrane protein YP_922506.1 1379321 D 196162 CDS YP_922507.1 119715542 4598544 1380219..1381433 1 NC_008699.1 PFAM: N-acylglucosamine 2-epimerase; KEGG: tfu:Tfu_1736 hypothetical protein; N-acylglucosamine 2-epimerase 1381433 4598544 Noca_1306 Nocardioides sp. JS614 N-acylglucosamine 2-epimerase YP_922507.1 1380219 D 196162 CDS YP_922508.1 119715543 4598545 complement(1381500..1382819) 1 NC_008699.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 1382819 4598545 Noca_1307 Nocardioides sp. JS614 nicotinate phosphoribosyltransferase YP_922508.1 1381500 R 196162 CDS YP_922509.1 119715544 4598546 1383198..1383782 1 NC_008699.1 KEGG: sco:SCO2915 hypothetical protein; hypothetical protein 1383782 4598546 Noca_1308 Nocardioides sp. JS614 hypothetical protein YP_922509.1 1383198 D 196162 CDS YP_922510.1 119715545 4598547 1383903..1384271 1 NC_008699.1 PFAM: NUDIX hydrolase; KEGG: rha:RHA1_ro06443 MutT/NUDIX family protein; NUDIX hydrolase 1384271 4598547 Noca_1309 Nocardioides sp. JS614 NUDIX hydrolase YP_922510.1 1383903 D 196162 CDS YP_922511.1 119715546 4598548 1384289..1384747 1 NC_008699.1 PFAM: Mov34/MPN/PAD-1 family protein; KEGG: sma:SAV5162 hypothetical protein; Mov34/MPN/PAD-1 family protein 1384747 4598548 Noca_1310 Nocardioides sp. JS614 Mov34/MPN/PAD-1 family protein YP_922511.1 1384289 D 196162 CDS YP_922512.1 119715547 4598549 1384750..1385022 1 NC_008699.1 PFAM: thiamineS protein; KEGG: rha:RHA1_ro01437 possible molybdopterin biosynthesis protein; sulfur transfer protein ThiS 1385022 4598549 Noca_1311 Nocardioides sp. JS614 sulfur transfer protein ThiS YP_922512.1 1384750 D 196162 CDS YP_922513.1 119715548 4598550 1385045..1386007 1 NC_008699.1 KEGG: tfu:Tfu_2368 cysteine synthase K/M; TIGRFAM: cysteine synthases; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; cysteine synthase 1386007 4598550 Noca_1312 Nocardioides sp. JS614 cysteine synthase YP_922513.1 1385045 D 196162 CDS YP_922514.1 119715549 4598551 complement(1386030..1386758) 1 NC_008699.1 KEGG: tbd:Tbd_2428 putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; SMART: PAC repeat-containing protein; PAS sensor protein 1386758 4598551 Noca_1313 Nocardioides sp. JS614 PAS sensor protein YP_922514.1 1386030 R 196162 CDS YP_922515.1 119715550 4598552 complement(1386839..1387849) 1 NC_008699.1 PFAM: sulfatase; type I phosphodiesterase/nucleotide pyrophosphatase; metalloenzyme domain protein; KEGG: bfr:BF3778 hypothetical protein; type I phosphodiesterase/nucleotide pyrophosphatase 1387849 4598552 Noca_1314 Nocardioides sp. JS614 type I phosphodiesterase/nucleotide pyrophosphatase YP_922515.1 1386839 R 196162 CDS YP_922516.1 119715551 4598553 1387943..1388791 1 NC_008699.1 converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 1388791 4598553 Noca_1315 Nocardioides sp. JS614 glutamate racemase YP_922516.1 1387943 D 196162 CDS YP_922517.1 119715552 4598554 1388795..1389565 1 NC_008699.1 PFAM: beta-lactamase domain protein; KEGG: tfu:Tfu_2366 hypothetical protein; beta-lactamase domain-containing protein 1389565 4598554 Noca_1316 Nocardioides sp. JS614 beta-lactamase domain-containing protein YP_922517.1 1388795 D 196162 CDS YP_922518.1 119715553 4598555 complement(1389568..1390389) 1 NC_008699.1 hypothetical protein 1390389 4598555 Noca_1317 Nocardioides sp. JS614 hypothetical protein YP_922518.1 1389568 R 196162 CDS YP_922519.1 119715554 4598556 complement(1390526..1391203) 1 NC_008699.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: tfu:Tfu_2233 regulatory protein, LuxR:response regulator receiver; response regulator receiver 1391203 4598556 Noca_1318 Nocardioides sp. JS614 response regulator receiver YP_922519.1 1390526 R 196162 CDS YP_922520.1 119715555 4598557 complement(1391200..1392354) 1 NC_008699.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: sma:SAV1990 two-component system sensor kinase; histidine kinase, dimerisation and phosphoacceptor region 1392354 4598557 Noca_1319 Nocardioides sp. JS614 histidine kinase, dimerisation and phosphoacceptor region YP_922520.1 1391200 R 196162 CDS YP_922521.1 119715556 4598558 1392486..1393388 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tfu:Tfu_1436 ABC-type multidrug transport system ATPase component; ABC transporter-like protein 1393388 4598558 Noca_1320 Nocardioides sp. JS614 ABC transporter-like protein YP_922521.1 1392486 D 196162 CDS YP_922522.1 119715557 4598559 1393385..1394197 1 NC_008699.1 hypothetical protein 1394197 4598559 Noca_1321 Nocardioides sp. JS614 hypothetical protein YP_922522.1 1393385 D 196162 CDS YP_922523.1 119715558 4598560 1394199..1395014 1 NC_008699.1 KEGG: sco:SCO6361 integral membrane protein; hypothetical protein 1395014 4598560 Noca_1322 Nocardioides sp. JS614 hypothetical protein YP_922523.1 1394199 D 196162 CDS YP_922524.1 119715559 4598561 1395035..1395763 1 NC_008699.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 1395763 rph 4598561 rph Nocardioides sp. JS614 ribonuclease PH YP_922524.1 1395035 D 196162 CDS YP_922525.1 119715560 4598562 1395760..1396374 1 NC_008699.1 TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; KEGG: nfa:nfa10960 HAM1 protein; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase 1396374 4598562 Noca_1324 Nocardioides sp. JS614 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase YP_922525.1 1395760 D 196162 CDS YP_922526.1 119715561 4598563 1396371..1396982 1 NC_008699.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: ttj:TTHA1390 acyltransferase family protein; phospholipid/glycerol acyltransferase 1396982 4598563 Noca_1325 Nocardioides sp. JS614 phospholipid/glycerol acyltransferase YP_922526.1 1396371 D 196162 CDS YP_922527.1 119715562 4598565 complement(1397160..1397651) 1 NC_008699.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sma:SAV5176 putative AhpC/TSA family protein; redoxin domain-containing protein 1397651 4598565 Noca_1326 Nocardioides sp. JS614 redoxin domain-containing protein YP_922527.1 1397160 R 196162 CDS YP_922528.1 119715563 4598566 1397744..1398433 1 NC_008699.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: sma:SAV3606 putative membrane protein; cobalamin (vitamin B12) biosynthesis protein CbiM 1398433 4598566 Noca_1327 Nocardioides sp. JS614 cobalamin (vitamin B12) biosynthesis protein CbiM YP_922528.1 1397744 D 196162 CDS YP_922529.1 119715564 4598567 1398430..1398705 1 NC_008699.1 KEGG: sma:SAV3606 putative membrane protein; hypothetical protein 1398705 4598567 Noca_1328 Nocardioides sp. JS614 hypothetical protein YP_922529.1 1398430 D 196162 CDS YP_922530.1 119715565 4598568 1398707..1399375 1 NC_008699.1 TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: sma:SAV3607 putative integral membrane transport protein; cobalt ABC transporter, inner membrane subunit CbiQ 1399375 4598568 Noca_1329 Nocardioides sp. JS614 cobalt ABC transporter, inner membrane subunit CbiQ YP_922530.1 1398707 D 196162 CDS YP_922531.1 119715566 4598569 1399383..1400195 1 NC_008699.1 KEGG: sma:SAV3608 putative ABC transporter ATP-binding protein; TIGRFAM: cobalt ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; cobalt ABC transporter ATPase 1400195 4598569 Noca_1330 Nocardioides sp. JS614 cobalt ABC transporter ATPase YP_922531.1 1399383 D 196162 CDS YP_922532.1 119715567 4598570 1400192..1400446 1 NC_008699.1 KEGG: sco:SCO2900 membrane protein; hypothetical protein 1400446 4598570 Noca_1331 Nocardioides sp. JS614 hypothetical protein YP_922532.1 1400192 D 196162 CDS YP_922533.1 119715568 4598571 1400450..1400794 1 NC_008699.1 PFAM: chaperonin Cpn10; KEGG: sma:SAV5178 putative GroES-family molecular chaperone; chaperonin Cpn10 1400794 4598571 Noca_1332 Nocardioides sp. JS614 chaperonin Cpn10 YP_922533.1 1400450 D 196162 CDS YP_922534.1 119715569 4598572 1400834..1403233 1 NC_008699.1 PFAM: peptidase S45, penicillin amidase; KEGG: dra:DRA0255 aculeacin A acylase; peptidase S45, penicillin amidase 1403233 4598572 Noca_1333 Nocardioides sp. JS614 peptidase S45, penicillin amidase YP_922534.1 1400834 D 196162 CDS YP_922535.1 119715570 4598573 complement(1403315..1404448) 1 NC_008699.1 hypothetical protein 1404448 4598573 Noca_1334 Nocardioides sp. JS614 hypothetical protein YP_922535.1 1403315 R 196162 CDS YP_922536.1 119715571 4598574 complement(1404642..1406141) 1 NC_008699.1 PFAM: Rieske [2Fe-2S] domain protein; FAD dependent oxidoreductase; KEGG: mpa:MAP1672 hypothetical protein; FAD dependent oxidoreductase 1406141 4598574 Noca_1335 Nocardioides sp. JS614 FAD dependent oxidoreductase YP_922536.1 1404642 R 196162 CDS YP_922537.1 119715572 4598575 complement(1406143..1407276) 1 NC_008699.1 TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: rha:RHA1_ro02920 tRNA processing ribonuclease BN; putative ribonuclease BN 1407276 4598575 Noca_1336 Nocardioides sp. JS614 putative ribonuclease BN YP_922537.1 1406143 R 196162 CDS YP_922538.1 119715573 4598576 complement(1407273..1407839) 1 NC_008699.1 PFAM: regulatory protein, LuxR; KEGG: sco:SCO0421 two-component response regulator; regulatory protein LuxR 1407839 4598576 Noca_1337 Nocardioides sp. JS614 regulatory protein LuxR YP_922538.1 1407273 R 196162 CDS YP_922539.1 119715574 4598577 1408004..1410322 1 NC_008699.1 PFAM: glycosyl transferase, family 2; KEGG: eba:ebA6116 putative beta-(1-3)-glucosyl transferase; glycosyl transferase family protein 1410322 4598577 Noca_1338 Nocardioides sp. JS614 glycosyl transferase family protein YP_922539.1 1408004 D 196162 CDS YP_922540.1 119715575 4598579 complement(1410514..1412085) 1 NC_008699.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: nfa:nfa23620 putative oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1412085 4598579 Noca_1339 Nocardioides sp. JS614 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_922540.1 1410514 R 196162 CDS YP_922541.1 119715576 4598580 1412168..1414216 1 NC_008699.1 KEGG: mag:amb1112 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; MASE1 domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor signal transduction histidine kinase 1414216 4598580 Noca_1340 Nocardioides sp. JS614 PAS/PAC sensor signal transduction histidine kinase YP_922541.1 1412168 D 196162 CDS YP_922542.1 119715577 4598581 1414310..1415257 1 NC_008699.1 PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: sco:SCO3798 possible chromosome condensation protein; pirin domain-containing protein 1415257 4598581 Noca_1341 Nocardioides sp. JS614 pirin domain-containing protein YP_922542.1 1414310 D 196162 CDS YP_922543.1 119715578 4598582 1415343..1415804 1 NC_008699.1 hypothetical protein 1415804 4598582 Noca_1342 Nocardioides sp. JS614 hypothetical protein YP_922543.1 1415343 D 196162 CDS YP_922544.1 119715579 4598508 1416026..1419028 1 NC_008699.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; KEGG: cps:CPS_3335 serine protease, subtilase family; peptidase S8/S53 subtilisin kexin sedolisin 1419028 4598508 Noca_1343 Nocardioides sp. JS614 peptidase S8/S53 subtilisin kexin sedolisin YP_922544.1 1416026 D 196162 CDS YP_922545.1 119715580 4598509 complement(1419132..1419821) 1 NC_008699.1 PFAM: regulatory protein, ArsR; LexA DNA-binding domain protein; KEGG: mpa:MAP2725c hypothetical protein; transcriptional regulator 1419821 4598509 Noca_1344 Nocardioides sp. JS614 transcriptional regulator YP_922545.1 1419132 R 196162 CDS YP_922546.1 119715581 4598510 1419949..1421193 1 NC_008699.1 PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO0213 putative nitrate/nitrite transporter protein; major facilitator transporter 1421193 4598510 Noca_1345 Nocardioides sp. JS614 major facilitator transporter YP_922546.1 1419949 D 196162 CDS YP_922547.1 119715582 4598511 1421190..1424912 1 NC_008699.1 TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: sco:SCO6535 putative nitrate reductase alpha chain NarG; respiratory nitrate reductase subunit alpha 1424912 4598511 Noca_1346 Nocardioides sp. JS614 respiratory nitrate reductase subunit alpha YP_922547.1 1421190 D 196162 CDS YP_922548.1 119715583 4598512 1424993..1426747 1 NC_008699.1 TIGRFAM: nitrate reductase, beta subunit; KEGG: mmc:Mmcs_1262 nitrate reductase, beta subunit; respiratory nitrate reductase subunit beta 1426747 4598512 Noca_1347 Nocardioides sp. JS614 respiratory nitrate reductase subunit beta YP_922548.1 1424993 D 196162 CDS YP_922549.1 119715584 4598513 1426744..1427454 1 NC_008699.1 TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase, delta subunit; KEGG: nfa:nfa45510 putative nitrate reductase delta subunit; respiratory nitrate reductase chaperone NarJ 1427454 4598513 Noca_1348 Nocardioides sp. JS614 respiratory nitrate reductase chaperone NarJ YP_922549.1 1426744 D 196162 CDS YP_922550.1 119715585 4598514 1427457..1428185 1 NC_008699.1 TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase, gamma subunit; KEGG: mbo:Mb1765c probable nitrate reductase NarX; respiratory nitrate reductase subunit gamma 1428185 4598514 Noca_1349 Nocardioides sp. JS614 respiratory nitrate reductase subunit gamma YP_922550.1 1427457 D 196162 CDS YP_922551.1 119715586 4598515 1428178..1428642 1 NC_008699.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: mmc:Mmcs_5288 hemerythrin HHE cation binding region; hemerythrin HHE cation binding domain-containing protein 1428642 4598515 Noca_1350 Nocardioides sp. JS614 hemerythrin HHE cation binding domain-containing protein YP_922551.1 1428178 D 196162 CDS YP_922552.1 119715587 4598517 complement(1429063..1429731) 1 NC_008699.1 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 1429731 4598517 Noca_1351 Nocardioides sp. JS614 oligoribonuclease YP_922552.1 1429063 R 196162 CDS YP_922553.1 119715588 4598518 1429807..1430292 1 NC_008699.1 PFAM: DoxX family protein; KEGG: fal:FRAAL1525 hypothetical protein; putative membrane protein; putative DoxD-like domain; DoxX family protein 1430292 4598518 Noca_1352 Nocardioides sp. JS614 DoxX family protein YP_922553.1 1429807 D 196162 CDS YP_922554.1 119715589 4598519 1430292..1431026 1 NC_008699.1 PFAM: DSBA oxidoreductase; KEGG: fra:Francci3_0913 DsbA oxidoreductase; DSBA oxidoreductase 1431026 4598519 Noca_1353 Nocardioides sp. JS614 DSBA oxidoreductase YP_922554.1 1430292 D 196162 CDS YP_922555.1 119715590 4598520 1431351..1432841 1 NC_008699.1 KEGG: mpa:MAP1053 hypothetical protein; hypothetical protein 1432841 4598520 Noca_1354 Nocardioides sp. JS614 hypothetical protein YP_922555.1 1431351 D 196162 CDS YP_922556.1 119715591 4598521 1432838..1433884 1 NC_008699.1 catalyzes the formation of inosine from adenosine; adenosine deaminase 1433884 4598521 Noca_1355 Nocardioides sp. JS614 adenosine deaminase YP_922556.1 1432838 D 196162 CDS YP_922557.1 119715592 4598522 1434044..1434697 1 NC_008699.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: mmc:Mmcs_1056 two component transcriptional regulator, LuxR family; regulatory protein LuxR 1434697 4598522 Noca_1356 Nocardioides sp. JS614 regulatory protein LuxR YP_922557.1 1434044 D 196162 CDS YP_922558.1 119715593 4598523 1434747..1434971 1 NC_008699.1 hypothetical protein 1434971 4598523 Noca_1357 Nocardioides sp. JS614 hypothetical protein YP_922558.1 1434747 D 196162 CDS YP_922559.1 119715594 4598524 1435142..1435459 1 NC_008699.1 hypothetical protein 1435459 4598524 Noca_1358 Nocardioides sp. JS614 hypothetical protein YP_922559.1 1435142 D 196162 CDS YP_922560.1 119715595 4598525 1435544..1436227 1 NC_008699.1 KEGG: ade:Adeh_3507 hypothetical protein; hypothetical protein 1436227 4598525 Noca_1359 Nocardioides sp. JS614 hypothetical protein YP_922560.1 1435544 D 196162 CDS YP_922561.1 119715596 4598527 complement(1436589..1437929) 1 NC_008699.1 hypothetical protein 1437929 4598527 Noca_1360 Nocardioides sp. JS614 hypothetical protein YP_922561.1 1436589 R 196162 CDS YP_922562.1 119715597 4598528 complement(1438107..1438364) 1 NC_008699.1 KEGG: rha:RHA1_ro02307 hypothetical protein; hypothetical protein 1438364 4598528 Noca_1361 Nocardioides sp. JS614 hypothetical protein YP_922562.1 1438107 R 196162 CDS YP_922563.1 119715598 4598529 complement(1438368..1438697) 1 NC_008699.1 KEGG: rha:RHA1_ro02307 hypothetical protein; hypothetical protein 1438697 4598529 Noca_1362 Nocardioides sp. JS614 hypothetical protein YP_922563.1 1438368 R 196162 CDS YP_922564.1 119715599 4598530 complement(1438713..1439069) 1 NC_008699.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: nfa:nfa32740 hypothetical protein; cupin 1439069 4598530 Noca_1363 Nocardioides sp. JS614 cupin YP_922564.1 1438713 R 196162 CDS YP_922565.1 119715600 4598531 complement(1439299..1440741) 1 NC_008699.1 PFAM: peptidase M24; peptidase M24B, X-Pro dipeptidase/aminopeptidase domain protein; KEGG: tfu:Tfu_1744 Xaa-Pro aminopeptidase; Xaa-Pro aminopeptidase 1440741 4598531 Noca_1364 Nocardioides sp. JS614 Xaa-Pro aminopeptidase YP_922565.1 1439299 R 196162 CDS YP_922566.1 119715601 4598532 1440810..1441943 1 NC_008699.1 KEGG: tfu:Tfu_1996 putative integral membrane protein; putative integral membrane protein 1441943 4598532 Noca_1365 Nocardioides sp. JS614 putative integral membrane protein YP_922566.1 1440810 D 196162 CDS YP_922567.1 119715602 4598533 1441940..1443658 1 NC_008699.1 KEGG: pac:PPA1639 putative ABC transporter; putative ABC transporter 1443658 4598533 Noca_1366 Nocardioides sp. JS614 putative ABC transporter YP_922567.1 1441940 D 196162 CDS YP_922568.1 119715603 4598534 1443732..1445399 1 NC_008699.1 KEGG: pac:PPA1638 putative ABC transporter; putative ABC transporter 1445399 4598534 Noca_1367 Nocardioides sp. JS614 putative ABC transporter YP_922568.1 1443732 D 196162 CDS YP_922569.1 119715604 4598535 1445438..1445995 1 NC_008699.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: lxx:Lxx12825 single-strand DNA-binding protein; single-strand binding protein 1445995 4598535 Noca_1368 Nocardioides sp. JS614 single-strand binding protein YP_922569.1 1445438 D 196162 CDS YP_922570.1 119715605 4598536 1446068..1447750 1 NC_008699.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein 1447750 4598536 Noca_1369 Nocardioides sp. JS614 putative ABC transporter ATP-binding protein YP_922570.1 1446068 D 196162 CDS YP_922571.1 119715606 4598537 complement(1447997..1448491) 1 NC_008699.1 PFAM: regulatory protein, MarR; KEGG: nfa:nfa2240 putative transcriptional regulator; regulatory protein MarR 1448491 4598537 Noca_1370 Nocardioides sp. JS614 regulatory protein MarR YP_922571.1 1447997 R 196162 CDS YP_922572.1 119715607 4598538 complement(1448622..1449836) 1 NC_008699.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 1449836 4598538 Noca_1371 Nocardioides sp. JS614 acetyl-CoA acetyltransferase YP_922572.1 1448622 R 196162 CDS YP_922573.1 119715608 4598539 complement(1449936..1450517) 1 NC_008699.1 PFAM: regulatory protein, TetR; KEGG: ade:Adeh_2880 putative transcriptional regulator, TetR family; regulatory protein TetR 1450517 4598539 Noca_1372 Nocardioides sp. JS614 regulatory protein TetR YP_922573.1 1449936 R 196162 CDS YP_922574.1 119715609 4598540 1450867..1451718 1 NC_008699.1 PFAM: acyl-ACP thioesterase; thioesterase superfamily protein; KEGG: sco:SCO2676 hypothetical protein; thioesterase superfamily protein 1451718 4598540 Noca_1373 Nocardioides sp. JS614 thioesterase superfamily protein YP_922574.1 1450867 D 196162 CDS YP_922575.1 119715610 4598541 complement(1452261..1452893) 1 NC_008699.1 KEGG: sco:SCO4826 hypothetical protein; hypothetical protein 1452893 4598541 Noca_1374 Nocardioides sp. JS614 hypothetical protein YP_922575.1 1452261 R 196162 CDS YP_922576.1 119715611 4598542 complement(1452965..1453462) 1 NC_008699.1 KEGG: lma:LmjF31.2670 hypothetical protein, unknown function; hypothetical protein 1453462 4598542 Noca_1375 Nocardioides sp. JS614 hypothetical protein YP_922576.1 1452965 R 196162 CDS YP_922577.1 119715612 4595849 complement(1453844..1454218) 1 NC_008699.1 PFAM: globin; KEGG: sco:SCO2671 putative globin; globin 1454218 4595849 Noca_1376 Nocardioides sp. JS614 globin YP_922577.1 1453844 R 196162 CDS YP_922578.1 119715613 4595850 1454318..1454743 1 NC_008699.1 PFAM: OsmC family protein; KEGG: sma:SAV1862 putative ATP/GTP-binding protein; OsmC family protein 1454743 4595850 Noca_1377 Nocardioides sp. JS614 OsmC family protein YP_922578.1 1454318 D 196162 CDS YP_922579.1 119715614 4595851 complement(1454752..1455780) 1 NC_008699.1 PFAM: MscS Mechanosensitive ion channel; KEGG: fra:Francci3_1154 MscS mechanosensitive ion channel; mechanosensitive ion channel MscS 1455780 4595851 Noca_1378 Nocardioides sp. JS614 mechanosensitive ion channel MscS YP_922579.1 1454752 R 196162 CDS YP_922580.1 119715615 4595852 1455836..1456204 1 NC_008699.1 hypothetical protein 1456204 4595852 Noca_1379 Nocardioides sp. JS614 hypothetical protein YP_922580.1 1455836 D 196162 CDS YP_922581.1 119715616 4595853 1456191..1456580 1 NC_008699.1 KEGG: fra:Francci3_1159 hypothetical protein; hypothetical protein 1456580 4595853 Noca_1380 Nocardioides sp. JS614 hypothetical protein YP_922581.1 1456191 D 196162 CDS YP_922582.1 119715617 4595854 complement(1456642..1459233) 1 NC_008699.1 TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: sco:SCO2643 aminopeptidase N; aminopeptidase N 1459233 4595854 Noca_1381 Nocardioides sp. JS614 aminopeptidase N YP_922582.1 1456642 R 196162 CDS YP_922583.1 119715618 4595855 1459289..1460419 1 NC_008699.1 TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: rxy:Rxyl_2688 chromate transporter; chromate transporter 1460419 4595855 Noca_1382 Nocardioides sp. JS614 chromate transporter YP_922583.1 1459289 D 196162 CDS YP_922584.1 119715619 4595856 1460421..1461047 1 NC_008699.1 KEGG: mmc:Mmcs_3603 DsbA oxidoreductase; DsbA oxidoreductase 1461047 4595856 Noca_1383 Nocardioides sp. JS614 DsbA oxidoreductase YP_922584.1 1460421 D 196162 CDS YP_922585.1 119715620 4595857 1461071..1461625 1 NC_008699.1 KEGG: fal:FRAAL5554 hypothetical protein; hypothetical protein 1461625 4595857 Noca_1384 Nocardioides sp. JS614 hypothetical protein YP_922585.1 1461071 D 196162 CDS YP_922586.1 119715621 4595858 complement(1461655..1462344) 1 NC_008699.1 KEGG: rha:RHA1_ro05008 hypothetical protein; hypothetical protein 1462344 4595858 Noca_1385 Nocardioides sp. JS614 hypothetical protein YP_922586.1 1461655 R 196162 CDS YP_922587.1 119715622 4595859 1462407..1464194 1 NC_008699.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 1464194 4595859 Noca_1386 Nocardioides sp. JS614 methionyl-tRNA synthetase YP_922587.1 1462407 D 196162 CDS YP_922588.1 119715623 4595860 complement(1464253..1464705) 1 NC_008699.1 KEGG: mmc:Mmcs_2426 class I peptide chain release factor; class I peptide chain release factor 1464705 4595860 Noca_1387 Nocardioides sp. JS614 class I peptide chain release factor YP_922588.1 1464253 R 196162 CDS YP_922589.1 119715624 4595861 complement(1464687..1465097) 1 NC_008699.1 PFAM: CoA-binding domain protein; KEGG: rha:RHA1_ro01695 possible CoA-binding protein; CoA-binding domain-containing protein 1465097 4595861 Noca_1388 Nocardioides sp. JS614 CoA-binding domain-containing protein YP_922589.1 1464687 R 196162 CDS YP_922590.1 119715625 4595862 1465246..1466073 1 NC_008699.1 hypothetical protein 1466073 4595862 Noca_1389 Nocardioides sp. JS614 hypothetical protein YP_922590.1 1465246 D 196162 CDS YP_922591.1 119715626 4595863 1466184..1467356 1 NC_008699.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: sco:SCO3051 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 1467356 4595863 Noca_1390 Nocardioides sp. JS614 acyl-CoA dehydrogenase domain-containing protein YP_922591.1 1466184 D 196162 CDS YP_922592.1 119715627 4595864 1467455..1467781 1 NC_008699.1 KEGG: sma:SAV1685 hypothetical protein; hypothetical protein 1467781 4595864 Noca_1391 Nocardioides sp. JS614 hypothetical protein YP_922592.1 1467455 D 196162 CDS YP_922593.1 119715628 4595865 complement(1467785..1470718) 1 NC_008699.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; KEGG: cya:CYA_2836 sensory box histidine kinase/response regulator; PAS sensor protein 1470718 4595865 Noca_1392 Nocardioides sp. JS614 PAS sensor protein YP_922593.1 1467785 R 196162 CDS YP_922594.1 119715629 4595866 1470960..1471742 1 NC_008699.1 PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: fal:FRAAL5992 SigH putative RNA polymerase sigma factor; sigma-70 region 4 domain-containing protein 1471742 4595866 Noca_1393 Nocardioides sp. JS614 sigma-70 region 4 domain-containing protein YP_922594.1 1470960 D 196162 CDS YP_922595.1 119715630 4595867 complement(1471739..1472605) 1 NC_008699.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 1472605 4595867 Noca_1394 Nocardioides sp. JS614 enoyl-CoA hydratase YP_922595.1 1471739 R 196162 CDS YP_922596.1 119715631 4595868 complement(1472602..1473816) 1 NC_008699.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: pac:PPA1699 cell envelope-related transcriptional attenuator; cell envelope-related transcriptional attenuator 1473816 4595868 Noca_1395 Nocardioides sp. JS614 cell envelope-related transcriptional attenuator YP_922596.1 1472602 R 196162 CDS YP_922597.1 119715632 4595869 complement(1473826..1475202) 1 NC_008699.1 PFAM: protein of unknown function UPF0089; KEGG: rha:RHA1_ro00024 hypothetical protein; diacylglycerol O-acyltransferase 1475202 4595869 Noca_1396 Nocardioides sp. JS614 diacylglycerol O-acyltransferase YP_922597.1 1473826 R 196162 CDS YP_922598.1 119715633 4595870 1475702..1476220 1 NC_008699.1 PFAM: thioesterase superfamily protein; KEGG: sco:SCO3049 acyl-CoA hydrolase; thioesterase superfamily protein 1476220 4595870 Noca_1397 Nocardioides sp. JS614 thioesterase superfamily protein YP_922598.1 1475702 D 196162 CDS YP_922599.1 119715634 4595871 1476323..1477768 1 NC_008699.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: tfu:Tfu_0017 cell envelope-related transcriptional attenuator; cell envelope-related transcriptional attenuator 1477768 4595871 Noca_1398 Nocardioides sp. JS614 cell envelope-related transcriptional attenuator YP_922599.1 1476323 D 196162 CDS YP_922600.1 119715635 4595872 1477851..1478798 1 NC_008699.1 PFAM: glycosyl transferase, family 2; KEGG: cdi:DIP0168 putative glycosyl transferase; glycosyl transferase family protein 1478798 4595872 Noca_1399 Nocardioides sp. JS614 glycosyl transferase family protein YP_922600.1 1477851 D 196162 CDS YP_922601.1 119715636 4595873 1478795..1479715 1 NC_008699.1 PFAM: glycosyl transferase, family 2; KEGG: mth:MTH348 rhamnosyl transferase; glycosyl transferase family protein 1479715 4595873 Noca_1400 Nocardioides sp. JS614 glycosyl transferase family protein YP_922601.1 1478795 D 196162 CDS YP_922602.1 119715637 4595874 1479722..1480909 1 NC_008699.1 PFAM: UDP-galactopyranose mutase; KEGG: rha:RHA1_ro04053 UDP-galactopyranose mutase; UDP-galactopyranose mutase 1480909 4595874 Noca_1401 Nocardioides sp. JS614 UDP-galactopyranose mutase YP_922602.1 1479722 D 196162 CDS YP_922603.1 119715638 4595875 1480977..1482956 1 NC_008699.1 KEGG: rha:RHA1_ro04054 possible glycosyltransferase; putative glycosyltransferase 1482956 4595875 Noca_1402 Nocardioides sp. JS614 putative glycosyltransferase YP_922603.1 1480977 D 196162 CDS YP_922604.1 119715639 4595876 1482947..1483849 1 NC_008699.1 PFAM: ABC-2 type transporter; KEGG: lxx:Lxx05020 lipopolysaccharide exporter; ABC transporter 1483849 4595876 Noca_1403 Nocardioides sp. JS614 ABC transporter YP_922604.1 1482947 D 196162 CDS YP_922605.1 119715640 4595877 1483846..1484646 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lxx:Lxx05010 lipopolysaccharide exporter; ABC transporter-like protein 1484646 4595877 Noca_1404 Nocardioides sp. JS614 ABC transporter-like protein YP_922605.1 1483846 D 196162 CDS YP_922606.1 119715641 4597312 1484953..1487832 1 NC_008699.1 PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; FG-GAP repeat protein; SMART: Animal peptidoglycan recognition protein PGRP; KEGG: sma:SAV5036 hypothetical protein; N-acetylmuramoyl-L-alanine amidase 1487832 4597312 Noca_1405 Nocardioides sp. JS614 N-acetylmuramoyl-L-alanine amidase YP_922606.1 1484953 D 196162 CDS YP_922607.1 119715642 4597313 complement(1487875..1488615) 1 NC_008699.1 KEGG: sma:SAV5035 hypothetical protein; hypothetical protein 1488615 4597313 Noca_1406 Nocardioides sp. JS614 hypothetical protein YP_922607.1 1487875 R 196162 CDS YP_922608.1 119715643 4597314 1488633..1489712 1 NC_008699.1 PFAM: Nucleotidyl transferase; KEGG: lxx:Lxx04570 mannose-1-phosphate guanylyltransferase; mannose-1-phosphate guanylyltransferase (GDP) 1489712 4597314 Noca_1407 Nocardioides sp. JS614 mannose-1-phosphate guanylyltransferase (GDP) YP_922608.1 1488633 D 196162 CDS YP_922609.1 119715644 4597315 complement(1489738..1490493) 1 NC_008699.1 KEGG: fal:FRAAL1258 hypothetical protein; putative signal peptide; hypothetical protein 1490493 4597315 Noca_1408 Nocardioides sp. JS614 hypothetical protein YP_922609.1 1489738 R 196162 CDS YP_922610.1 119715645 4597316 complement(1490556..1491521) 1 NC_008699.1 TIGRFAM: F420-dependent oxidoreductase, putative; PFAM: protein of unknown function DUF129; KEGG: tfu:Tfu_2518 hypothetical protein; F420-dependent oxidoreductase 1491521 4597316 Noca_1409 Nocardioides sp. JS614 F420-dependent oxidoreductase YP_922610.1 1490556 R 196162 CDS YP_922611.1 119715646 4597317 complement(1491518..1492531) 1 NC_008699.1 catalyzes the formation of the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) and GMP from actyl (2) diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO); LPPG:FO 2-phospho-L-lactate transferase 1492531 4597317 Noca_1410 Nocardioides sp. JS614 LPPG:FO 2-phospho-L-lactate transferase YP_922611.1 1491518 R 196162 CDS YP_922612.1 119715647 4597318 1492688..1492942 1 NC_008699.1 PFAM: transcription factor WhiB; KEGG: sco:SCO3034 sporulation regulatory protein; transcription factor WhiB 1492942 4597318 Noca_1411 Nocardioides sp. JS614 transcription factor WhiB YP_922612.1 1492688 D 196162 CDS YP_922613.1 119715648 4597319 1493039..1495894 1 NC_008699.1 PFAM: glycosyl transferase, family 2; KEGG: sma:SAV5043 hypothetical protein; glycosyl transferase family protein 1495894 4597319 Noca_1412 Nocardioides sp. JS614 glycosyl transferase family protein YP_922613.1 1493039 D 196162 CDS YP_922614.1 119715649 4597320 1495891..1497318 1 NC_008699.1 KEGG: tfu:Tfu_2513 hypothetical protein; hypothetical protein 1497318 4597320 Noca_1413 Nocardioides sp. JS614 hypothetical protein YP_922614.1 1495891 D 196162 CDS YP_922615.1 119715650 4597321 complement(1497511..1498464) 1 NC_008699.1 PFAM: ornithine cyclodeaminase/mu-crystallin; Shikimate/quinate 5-dehydrogenase; KEGG: eca:ECA2039 putative ornithine cyclodeaminase; ornithine cyclodeaminase 1498464 4597321 Noca_1414 Nocardioides sp. JS614 ornithine cyclodeaminase YP_922615.1 1497511 R 196162 CDS YP_922616.1 119715651 4597322 complement(1498484..1499644) 1 NC_008699.1 PFAM: alanine racemase domain protein; KEGG: bja:bll3964 hypothetical protein; alanine racemase domain-containing protein 1499644 4597322 Noca_1415 Nocardioides sp. JS614 alanine racemase domain-containing protein YP_922616.1 1498484 R 196162 CDS YP_922617.1 119715652 4597323 complement(1499725..1500654) 1 NC_008699.1 PFAM: aldo/keto reductase; KEGG: bja:blr1124 oxidoreductase; aldo/keto reductase 1500654 4597323 Noca_1416 Nocardioides sp. JS614 aldo/keto reductase YP_922617.1 1499725 R 196162 CDS YP_922618.1 119715653 4597324 complement(1500651..1502327) 1 NC_008699.1 PFAM: amidohydrolase; D-aminoacylase domain protein; Amidohydrolase 3; KEGG: mta:Moth_1302 N-acyl-D-amino-acid deacylase; dihydroorotase 1502327 4597324 Noca_1417 Nocardioides sp. JS614 dihydroorotase YP_922618.1 1500651 R 196162 CDS YP_922619.1 119715654 4597325 complement(1502324..1503154) 1 NC_008699.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_B0418 ABC sugar transporter, inner membrane subunit; binding-protein-dependent transport systems inner membrane component 1503154 4597325 Noca_1418 Nocardioides sp. JS614 binding-protein-dependent transport systems inner membrane component YP_922619.1 1502324 R 196162 CDS YP_922620.1 119715655 4597326 complement(1503151..1504095) 1 NC_008699.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_B0419 ABC sugar transporter, inner membrane subunit; binding-protein-dependent transport system inner membrane protein 1504095 4597326 Noca_1419 Nocardioides sp. JS614 binding-protein-dependent transport system inner membrane protein YP_922620.1 1503151 R 196162 CDS YP_922621.1 119715656 4597327 complement(1504169..1505443) 1 NC_008699.1 PFAM: extracellular solute-binding protein, family 1; KEGG: bmb:BruAb2_0484 sugar ABC transporter, periplasmic sugar-binding protein; extracellular solute-binding protein 1505443 4597327 Noca_1420 Nocardioides sp. JS614 extracellular solute-binding protein YP_922621.1 1504169 R 196162 CDS YP_922622.1 119715657 4597328 complement(1505518..1506990) 1 NC_008699.1 PFAM: aldehyde dehydrogenase; KEGG: gka:GK1919 aldehyde dehydrogenase; aldehyde dehydrogenase 1506990 4597328 Noca_1421 Nocardioides sp. JS614 aldehyde dehydrogenase YP_922622.1 1505518 R 196162 CDS YP_922623.1 119715658 4597329 1507194..1507859 1 NC_008699.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: mta:Moth_0073 transcriptional regulator, GntR family; GntR family transcriptional regulator 1507859 4597329 Noca_1422 Nocardioides sp. JS614 GntR family transcriptional regulator YP_922623.1 1507194 D 196162 CDS YP_922624.1 119715659 4597330 complement(1507871..1508323) 1 NC_008699.1 KEGG: fal:FRAAL1269 hypothetical protein; hypothetical protein 1508323 4597330 Noca_1423 Nocardioides sp. JS614 hypothetical protein YP_922624.1 1507871 R 196162 CDS YP_922625.1 119715660 4597331 1508373..1508732 1 NC_008699.1 KEGG: sma:SAV5046 hypothetical protein; hypothetical protein 1508732 4597331 Noca_1424 Nocardioides sp. JS614 hypothetical protein YP_922625.1 1508373 D 196162 CDS YP_922626.1 119715661 4597332 1508756..1510165 1 NC_008699.1 PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: sco:SCO3028 phosphomannomutase; phosphomannomutase 1510165 4597332 Noca_1425 Nocardioides sp. JS614 phosphomannomutase YP_922626.1 1508756 D 196162 CDS YP_922627.1 119715662 4597333 1510167..1510337 1 NC_008699.1 PFAM: protein of unknown function DUF343; KEGG: sma:SAV5049 hypothetical protein; hypothetical protein 1510337 4597333 Noca_1426 Nocardioides sp. JS614 hypothetical protein YP_922627.1 1510167 D 196162 CDS YP_922628.1 119715663 4597334 1510350..1511378 1 NC_008699.1 KEGG: pac:PPA1688 hypothetical protein; hypothetical protein 1511378 4597334 Noca_1427 Nocardioides sp. JS614 hypothetical protein YP_922628.1 1510350 D 196162 CDS YP_922629.1 119715664 4597335 1511408..1512571 1 NC_008699.1 PFAM: acyltransferase 3; KEGG: sma:SAV5444 hypothetical protein; acyltransferase 3 1512571 4597335 Noca_1428 Nocardioides sp. JS614 acyltransferase 3 YP_922629.1 1511408 D 196162 CDS YP_922630.1 119715665 4597336 1512660..1514081 1 NC_008699.1 KEGG: fal:FRAAL2102 protoporphyrinogen oxidase; TIGRFAM: protoporphyrinogen oxidase; PFAM: amine oxidase; FAD dependent oxidoreductase; protoporphyrinogen oxidase 1514081 4597336 Noca_1429 Nocardioides sp. JS614 protoporphyrinogen oxidase YP_922630.1 1512660 D 196162 CDS YP_922631.1 119715666 4597198 1514078..1515247 1 NC_008699.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pai:PAE0596 metallo cofactor biosynthesis protein; radical SAM domain-containing protein 1515247 4597198 Noca_1430 Nocardioides sp. JS614 radical SAM domain-containing protein YP_922631.1 1514078 D 196162 CDS YP_922632.1 119715667 4597199 1515287..1516231 1 NC_008699.1 PFAM: protein of unknown function DUF808; KEGG: mmc:Mmcs_2667 protein of unknown function DUF808; hypothetical protein 1516231 4597199 Noca_1431 Nocardioides sp. JS614 hypothetical protein YP_922632.1 1515287 D 196162 CDS YP_922633.1 119715668 4597200 1516415..1517845 1 NC_008699.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 1517845 4597200 Noca_1432 Nocardioides sp. JS614 S-adenosyl-L-homocysteine hydrolase YP_922633.1 1516415 D 196162 CDS YP_922634.1 119715669 4597201 1517961..1518707 1 NC_008699.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sco:SCO3013 putative two-component system response regulator; response regulator receiver 1518707 4597201 Noca_1433 Nocardioides sp. JS614 response regulator receiver YP_922634.1 1517961 D 196162 CDS YP_922635.1 119715670 4597202 1518715..1520349 1 NC_008699.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: sco:SCO3012 putative two-component system histidine kinase; ATPase domain-containing protein 1520349 4597202 Noca_1434 Nocardioides sp. JS614 ATPase domain-containing protein YP_922635.1 1518715 D 196162 CDS YP_922636.1 119715671 4597203 1520346..1522094 1 NC_008699.1 KEGG: lxx:Lxx05370 lipoprotein; hypothetical protein 1522094 4597203 Noca_1435 Nocardioides sp. JS614 hypothetical protein YP_922636.1 1520346 D 196162 CDS YP_922637.1 119715672 4597204 1522253..1522900 1 NC_008699.1 KEGG: sco:SCO3010 hypothetical protein; hypothetical protein 1522900 4597204 Noca_1436 Nocardioides sp. JS614 hypothetical protein YP_922637.1 1522253 D 196162 CDS YP_922638.1 119715673 4597205 1523421..1524044 1 NC_008699.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: sma:SAV5067 hypothetical protein; sigma 54 modulation protein / 30S ribosomal protein S30P 1524044 4597205 Noca_1437 Nocardioides sp. JS614 sigma 54 modulation protein / 30S ribosomal protein S30P YP_922638.1 1523421 D 196162 CDS YP_922639.1 119715674 4597206 1524224..1524865 1 NC_008699.1 PFAM: regulatory protein, LuxR; response regulator receiver; Bacterio-opsin activator, HTH domain protein; KEGG: sma:SAV5068 putative two-component system response regulator; response regulator receiver 1524865 4597206 Noca_1438 Nocardioides sp. JS614 response regulator receiver YP_922639.1 1524224 D 196162 CDS YP_922640.1 119715675 4597207 1525163..1526362 1 NC_008699.1 PFAM: protein of unknown function DUF1006; KEGG: tfu:Tfu_0254 hypothetical protein; hypothetical protein 1526362 4597207 Noca_1439 Nocardioides sp. JS614 hypothetical protein YP_922640.1 1525163 D 196162 CDS YP_922641.1 119715676 4597208 1526430..1529243 1 NC_008699.1 TIGRFAM: preprotein translocase, SecA subunit; PFAM: helicase domain protein; SEC-C motif domain protein; SecA DEAD domain protein; SecA Wing and Scaffold; SecA preprotein cross-linking region; KEGG: sma:SAV5071 preprotein translocase SecA subunit; protein translocase subunit secA 1529243 4597208 Noca_1440 Nocardioides sp. JS614 protein translocase subunit secA YP_922641.1 1526430 D 196162 CDS YP_922642.1 119715677 4597209 complement(1529302..1529820) 1 NC_008699.1 KEGG: fal:FRAAL1307 hypothetical protein; hypothetical protein 1529820 4597209 Noca_1441 Nocardioides sp. JS614 hypothetical protein YP_922642.1 1529302 R 196162 CDS YP_922643.1 119715678 4597210 complement(1529817..1530455) 1 NC_008699.1 KEGG: fra:Francci3_1730 response regulator receiver and SARP domain protein; hypothetical protein 1530455 4597210 Noca_1442 Nocardioides sp. JS614 hypothetical protein YP_922643.1 1529817 R 196162 CDS YP_922644.1 119715679 4597211 1530589..1531122 1 NC_008699.1 KEGG: fra:Francci3_0770 hypothetical protein; hypothetical protein 1531122 4597211 Noca_1443 Nocardioides sp. JS614 hypothetical protein YP_922644.1 1530589 D 196162 CDS YP_922645.1 119715680 4597212 complement(1531272..1531610) 1 NC_008699.1 mediates the export of protein precursors bearing twin-arginine signal peptides; sec-independent translocase 1531610 4597212 Noca_1444 Nocardioides sp. JS614 sec-independent translocase YP_922645.1 1531272 R 196162 CDS YP_922646.1 119715681 4597213 complement(1531635..1532798) 1 NC_008699.1 PFAM: protein of unknown function DUF59; KEGG: sma:SAV3112 putative ATP-binding protein; hypothetical protein 1532798 4597213 Noca_1445 Nocardioides sp. JS614 hypothetical protein YP_922646.1 1531635 R 196162 CDS YP_922647.1 119715682 4597214 complement(1532810..1533352) 1 NC_008699.1 PFAM: protein of unknown function DUF1003; KEGG: sma:SAV3111 hypothetical protein; hypothetical protein 1533352 4597214 Noca_1446 Nocardioides sp. JS614 hypothetical protein YP_922647.1 1532810 R 196162 CDS YP_922648.1 119715683 4597215 complement(1533345..1534619) 1 NC_008699.1 PFAM: CBS domain containing protein; MgtE intracellular region; KEGG: sma:SAV3110 magnesium (Mg2+) transporter; MgtE integral membrane protein 1534619 4597215 Noca_1447 Nocardioides sp. JS614 MgtE integral membrane protein YP_922648.1 1533345 R 196162 CDS YP_922649.1 119715684 4597216 1534663..1535781 1 NC_008699.1 hypothetical protein 1535781 4597216 Noca_1448 Nocardioides sp. JS614 hypothetical protein YP_922649.1 1534663 D 196162 CDS YP_922650.1 119715685 4597217 1535864..1536958 1 NC_008699.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: hch:HCH_02985 beta-glucanase/beta-glucan synthetase; endonuclease/exonuclease/phosphatase 1536958 4597217 Noca_1449 Nocardioides sp. JS614 endonuclease/exonuclease/phosphatase YP_922650.1 1535864 D 196162 CDS YP_922651.1 119715686 4597218 1537051..1538250 1 NC_008699.1 KEGG: sma:SAV5466 hypothetical protein; hypothetical protein 1538250 4597218 Noca_1450 Nocardioides sp. JS614 hypothetical protein YP_922651.1 1537051 D 196162 CDS YP_922652.1 119715687 4597219 1538342..1539913 1 NC_008699.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pat:Patl_3212 coagulation factor 5/8 type-like; type 11 methyltransferase 1539913 4597219 Noca_1451 Nocardioides sp. JS614 type 11 methyltransferase YP_922652.1 1538342 D 196162 CDS YP_922653.1 119715688 4597220 1539910..1540149 1 NC_008699.1 hypothetical protein 1540149 4597220 Noca_1452 Nocardioides sp. JS614 hypothetical protein YP_922653.1 1539910 D 196162 CDS YP_922654.1 119715689 4597221 1540155..1541213 1 NC_008699.1 hypothetical protein 1541213 4597221 Noca_1453 Nocardioides sp. JS614 hypothetical protein YP_922654.1 1540155 D 196162 CDS YP_922655.1 119715690 4597222 1541260..1542681 1 NC_008699.1 KEGG: sma:SAV5466 hypothetical protein; hypothetical protein 1542681 4597222 Noca_1454 Nocardioides sp. JS614 hypothetical protein YP_922655.1 1541260 D 196162 CDS YP_922656.1 119715691 4597223 1542686..1543717 1 NC_008699.1 hypothetical protein 1543717 4597223 Noca_1455 Nocardioides sp. JS614 hypothetical protein YP_922656.1 1542686 D 196162 CDS YP_922657.1 119715692 4597224 1543771..1544967 1 NC_008699.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: sma:SAV1915 putative acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 1544967 4597224 Noca_1456 Nocardioides sp. JS614 acyl-CoA dehydrogenase domain-containing protein YP_922657.1 1543771 D 196162 CDS YP_922658.1 119715693 4597225 1545049..1546074 1 NC_008699.1 hypothetical protein 1546074 4597225 Noca_1457 Nocardioides sp. JS614 hypothetical protein YP_922658.1 1545049 D 196162 CDS YP_922659.1 119715694 4597226 1546211..1546393 1 NC_008699.1 hypothetical protein 1546393 4597226 Noca_1458 Nocardioides sp. JS614 hypothetical protein YP_922659.1 1546211 D 196162 CDS YP_922660.1 119715695 4597227 1546463..1546996 1 NC_008699.1 PFAM: MaoC domain protein dehydratase; KEGG: sco:SCO6470 hypothetical protein; dehydratase 1546996 4597227 Noca_1459 Nocardioides sp. JS614 dehydratase YP_922660.1 1546463 D 196162 CDS YP_922661.1 119715696 4597228 complement(1547014..1548195) 1 NC_008699.1 PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro06868 probable transporter, MFS superfamily; major facilitator transporter 1548195 4597228 Noca_1460 Nocardioides sp. JS614 major facilitator transporter YP_922661.1 1547014 R 196162 CDS YP_922662.1 119715697 4597229 1548303..1550264 1 NC_008699.1 PFAM: TrkA-N domain protein; KEGG: mlo:mll0907 probable secreted protein; TrkA domain-containing protein 1550264 4597229 Noca_1461 Nocardioides sp. JS614 TrkA domain-containing protein YP_922662.1 1548303 D 196162 CDS YP_922663.1 119715698 4597230 1550284..1550856 1 NC_008699.1 PFAM: Phosphoglycerate mutase; KEGG: fal:FRAAL1530 putative phosphoglycerate mutase family protein; phosphoglycerate mutase 1550856 4597230 Noca_1462 Nocardioides sp. JS614 phosphoglycerate mutase YP_922663.1 1550284 D 196162 CDS YP_922664.1 119715699 4597231 complement(1550950..1552194) 1 NC_008699.1 SMART: HNH nuclease; KEGG: fal:FRAAL3997 hypothetical protein; HNH nuclease 1552194 4597231 Noca_1463 Nocardioides sp. JS614 HNH nuclease YP_922664.1 1550950 R 196162 CDS YP_922665.1 119715700 4597232 1552552..1553199 1 NC_008699.1 KEGG: tfu:Tfu_0510 hypothetical protein; hypothetical protein 1553199 4597232 Noca_1464 Nocardioides sp. JS614 hypothetical protein YP_922665.1 1552552 D 196162 CDS YP_922666.1 119715701 4597233 1553227..1554117 1 NC_008699.1 PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: pac:PPA1328 predicted metal-dependent phosphoesterase; phosphotransferase domain-containing protein 1554117 4597233 Noca_1465 Nocardioides sp. JS614 phosphotransferase domain-containing protein YP_922666.1 1553227 D 196162 CDS YP_922667.1 119715702 4597234 complement(1554121..1554882) 1 NC_008699.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sco:SCO4764 putative dehydrogenase; short-chain dehydrogenase/reductase SDR 1554882 4597234 Noca_1466 Nocardioides sp. JS614 short-chain dehydrogenase/reductase SDR YP_922667.1 1554121 R 196162 CDS YP_922668.1 119715703 4597235 1555086..1555910 1 NC_008699.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: fal:FRAAL6061 putative partitioning or sporulation protein; cobyrinic acid a,c-diamide synthase 1555910 4597235 Noca_1467 Nocardioides sp. JS614 cobyrinic acid a,c-diamide synthase YP_922668.1 1555086 D 196162 CDS YP_922669.1 119715704 4597236 1555907..1556611 1 NC_008699.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: sco:SCO4430 secreted protein; ErfK/YbiS/YcfS/YnhG family protein 1556611 4597236 Noca_1468 Nocardioides sp. JS614 ErfK/YbiS/YcfS/YnhG family protein YP_922669.1 1555907 D 196162 CDS YP_922670.1 119715705 4596285 complement(1556692..1558131) 1 NC_008699.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: pac:PPA1325 putative ATP-dependent RNA helicase; DEAD/DEAH box helicase 1558131 4596285 Noca_1469 Nocardioides sp. JS614 DEAD/DEAH box helicase YP_922670.1 1556692 R 196162 CDS YP_922671.1 119715706 4596286 1558310..1559023 1 NC_008699.1 KEGG: sma:SAV3097 hypothetical protein; hypothetical protein 1559023 4596286 Noca_1470 Nocardioides sp. JS614 hypothetical protein YP_922671.1 1558310 D 196162 CDS YP_922672.1 119715707 4596287 complement(1559168..1559470) 1 NC_008699.1 KEGG: sco:SCO1819 integral membrane protein; integral membrane protein 1559470 4596287 Noca_1471 Nocardioides sp. JS614 integral membrane protein YP_922672.1 1559168 R 196162 CDS YP_922673.1 119715708 4596288 complement(1559647..1559868) 1 NC_008699.1 KEGG: sma:SAV3095 hypothetical protein; hypothetical protein 1559868 4596288 Noca_1472 Nocardioides sp. JS614 hypothetical protein YP_922673.1 1559647 R 196162 CDS YP_922674.1 119715709 4596289 complement(1559905..1560492) 1 NC_008699.1 PFAM: regulatory protein, TetR; KEGG: sco:SCO5170 TetR-family transcriptional regulator; TetR family transcriptional regulator 1560492 4596289 Noca_1473 Nocardioides sp. JS614 TetR family transcriptional regulator YP_922674.1 1559905 R 196162 CDS YP_922675.1 119715710 4596290 1560721..1561932 1 NC_008699.1 PFAM: UBA/THIF-type NAD/FAD binding protein; Rhodanese domain protein; MoeZ/MoeB domain protein; KEGG: sma:SAV3082 molybdopterin biosynthesis protein MoeB; UBA/THIF-type NAD/FAD binding protein 1561932 4596290 Noca_1474 Nocardioides sp. JS614 UBA/THIF-type NAD/FAD binding protein YP_922675.1 1560721 D 196162 CDS YP_922676.1 119715711 4596291 1562112..1563173 1 NC_008699.1 hypothetical protein 1563173 4596291 Noca_1475 Nocardioides sp. JS614 hypothetical protein YP_922676.1 1562112 D 196162 CDS YP_922677.1 119715712 4596292 1563307..1564044 1 NC_008699.1 KEGG: sco:SCO6136 transmembrane protein; hypothetical protein 1564044 4596292 Noca_1476 Nocardioides sp. JS614 hypothetical protein YP_922677.1 1563307 D 196162 CDS YP_922678.1 119715713 4596293 1564041..1564499 1 NC_008699.1 hypothetical protein 1564499 4596293 Noca_1477 Nocardioides sp. JS614 hypothetical protein YP_922678.1 1564041 D 196162 CDS YP_922679.1 119715714 4596294 1564502..1565524 1 NC_008699.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: mmc:Mmcs_0154 ATPase associated with various cellular activities, AAA_3; ATPase 1565524 4596294 Noca_1478 Nocardioides sp. JS614 ATPase YP_922679.1 1564502 D 196162 CDS YP_922680.1 119715715 4596295 1565521..1566843 1 NC_008699.1 PFAM: protein of unknown function DUF58; KEGG: mpa:MAP3217c hypothetical protein; hypothetical protein 1566843 4596295 Noca_1479 Nocardioides sp. JS614 hypothetical protein YP_922680.1 1565521 D 196162 CDS YP_922681.1 119715716 4596296 1566840..1567379 1 NC_008699.1 hypothetical protein 1567379 4596296 Noca_1480 Nocardioides sp. JS614 hypothetical protein YP_922681.1 1566840 D 196162 CDS YP_922682.1 119715717 4596297 1567376..1567717 1 NC_008699.1 PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: tfu:Tfu_0522 hypothetical protein; methylated-DNA--protein-cysteine methyltransferase 1567717 4596297 Noca_1481 Nocardioides sp. JS614 methylated-DNA--protein-cysteine methyltransferase YP_922682.1 1567376 D 196162 CDS YP_922683.1 119715718 4596298 1567791..1568825 1 NC_008699.1 KEGG: rha:RHA1_ro04496 ABC transporter, ATP-binding component; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; daunorubicin resistance ABC transporter ATPase subunit 1568825 4596298 Noca_1482 Nocardioides sp. JS614 daunorubicin resistance ABC transporter ATPase subunit YP_922683.1 1567791 D 196162 CDS YP_922684.1 119715719 4596299 1568825..1569634 1 NC_008699.1 PFAM: ABC-2 type transporter; KEGG: rha:RHA1_ro04497 ABC transporter, permease component; ABC transporter 1569634 4596299 Noca_1483 Nocardioides sp. JS614 ABC transporter YP_922684.1 1568825 D 196162 CDS YP_922685.1 119715720 4596300 complement(1569722..1571140) 1 NC_008699.1 PFAM: protein of unknown function DUF1116; KEGG: mta:Moth_2121 protein of unknown function DUF1116; hypothetical protein 1571140 4596300 Noca_1484 Nocardioides sp. JS614 hypothetical protein YP_922685.1 1569722 R 196162 CDS YP_922686.1 119715721 4596301 complement(1571137..1572552) 1 NC_008699.1 PFAM: FdrA family protein; KEGG: ecp:ECP_4036 YahF/FdrA-like protein; FdrA family protein 1572552 4596301 Noca_1485 Nocardioides sp. JS614 FdrA family protein YP_922686.1 1571137 R 196162 CDS YP_922687.1 119715722 4596302 complement(1572549..1573202) 1 NC_008699.1 hypothetical protein 1573202 4596302 Noca_1486 Nocardioides sp. JS614 hypothetical protein YP_922687.1 1572549 R 196162 CDS YP_922688.1 119715723 4596303 1573278..1574594 1 NC_008699.1 KEGG: rha:RHA1_ro05298 hypothetical protein; hypothetical protein 1574594 4596303 Noca_1487 Nocardioides sp. JS614 hypothetical protein YP_922688.1 1573278 D 196162 CDS YP_922689.1 119715724 4596304 1574954..1576417 1 NC_008699.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: rha:RHA1_ro03492 possible xanthine/uracil permease; xanthine/uracil/vitamin C permease 1576417 4596304 Noca_1488 Nocardioides sp. JS614 xanthine/uracil/vitamin C permease YP_922689.1 1574954 D 196162 CDS YP_922690.1 119715725 4596305 1576435..1577277 1 NC_008699.1 PFAM: molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: rha:RHA1_ro03491 dehydrogenase; carbon monoxide dehydrogenase 1577277 4596305 Noca_1489 Nocardioides sp. JS614 carbon monoxide dehydrogenase YP_922690.1 1576435 D 196162 CDS YP_922691.1 119715726 4596306 1577274..1577795 1 NC_008699.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rha:RHA1_ro03490 probable carbon monoxide dehydrogenase small subunit (ferredoxin); 2Fe-2S iron-sulfur cluster binding domain-containing protein 1577795 4596306 Noca_1490 Nocardioides sp. JS614 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_922691.1 1577274 D 196162 CDS YP_922692.1 119715727 4596307 1577800..1580211 1 NC_008699.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: rha:RHA1_ro03489 probable carbon monoxide dehydrogenase large subunit; xanthine dehydrogenase, molybdenum binding subunit apoprotein 1580211 4596307 Noca_1491 Nocardioides sp. JS614 xanthine dehydrogenase, molybdenum binding subunit apoprotein YP_922692.1 1577800 D 196162 CDS YP_922693.1 119715728 4596308 1580208..1580858 1 NC_008699.1 PFAM: carbon monoxide dehydrogenase subunit G; KEGG: rha:RHA1_ro03488 possible carbon monoxide dehydrogenase protein G; carbon monoxide dehydrogenase subunit G 1580858 4596308 Noca_1492 Nocardioides sp. JS614 carbon monoxide dehydrogenase subunit G YP_922693.1 1580208 D 196162 CDS YP_922694.1 119715729 4596309 1581001..1582407 1 NC_008699.1 PFAM: Amidase; KEGG: rha:RHA1_ro04799 probable amidase; amidase 1582407 4596309 Noca_1493 Nocardioides sp. JS614 amidase YP_922694.1 1581001 D 196162 CDS YP_922695.1 119715730 4596310 1583773..1584438 1 NC_008699.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: lxx:Lxx12140 1-acylglycerol-3-phosphate O-acyltransferase; phospholipid/glycerol acyltransferase 1584438 4596310 Noca_1494 Nocardioides sp. JS614 phospholipid/glycerol acyltransferase YP_922695.1 1583773 D 196162 CDS YP_922696.1 119715731 4596311 1584629..1585900 1 NC_008699.1 PFAM: Amidohydrolase 3; KEGG: bja:bll7276 putative cytosine deaminase; N-isopropylammelide isopropylaminohydrolase 1585900 4596311 Noca_1495 Nocardioides sp. JS614 N-isopropylammelide isopropylaminohydrolase YP_922696.1 1584629 D 196162 CDS YP_922697.1 119715732 4596312 1585897..1588017 1 NC_008699.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: rha:RHA1_ro03487 probable hydantoin utilization protein A; 5-oxoprolinase 1588017 4596312 Noca_1496 Nocardioides sp. JS614 5-oxoprolinase YP_922697.1 1585897 D 196162 CDS YP_922698.1 119715733 4596313 1588064..1590043 1 NC_008699.1 PFAM: Hydantoinase B/oxoprolinase; KEGG: rha:RHA1_ro03486 probable hydantoin utilization protein B; hydantoinase B/oxoprolinase 1590043 4596313 Noca_1497 Nocardioides sp. JS614 hydantoinase B/oxoprolinase YP_922698.1 1588064 D 196162 CDS YP_922699.1 119715734 4596314 1590146..1590841 1 NC_008699.1 KEGG: fal:FRAAL0649 hypothetical protein; hypothetical protein 1590841 4596314 Noca_1498 Nocardioides sp. JS614 hypothetical protein YP_922699.1 1590146 D 196162 CDS YP_922700.1 119715735 4596315 1590868..1591542 1 NC_008699.1 PFAM: NmrA family protein; KEGG: rha:RHA1_ro03485 hypothetical protein; NmrA family protein 1591542 4596315 Noca_1499 Nocardioides sp. JS614 NmrA family protein YP_922700.1 1590868 D 196162 CDS YP_922701.1 119715736 4596316 complement(1591621..1592316) 1 NC_008699.1 PFAM: protein of unknown function DUF124; KEGG: tko:TK0182 hypothetical protein; hypothetical protein 1592316 4596316 Noca_1500 Nocardioides sp. JS614 hypothetical protein YP_922701.1 1591621 R 196162 CDS YP_922702.1 119715737 4596317 1592425..1592826 1 NC_008699.1 PFAM: protein of unknown function DUF985; KEGG: blo:BL1117 narrowly conserved hypothetical protein; hypothetical protein 1592826 4596317 Noca_1501 Nocardioides sp. JS614 hypothetical protein YP_922702.1 1592425 D 196162 CDS YP_922703.1 119715738 4596318 1592823..1593578 1 NC_008699.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: sco:SCO1335 putative oxidoreductase; short-chain dehydrogenase/reductase SDR 1593578 4596318 Noca_1502 Nocardioides sp. JS614 short-chain dehydrogenase/reductase SDR YP_922703.1 1592823 D 196162 CDS YP_922704.1 119715739 4596319 1593801..1594478 1 NC_008699.1 KEGG: sco:SCO3603 putative Na(+)/H(+) antiporter; NhaP-type Na+/H+ and K+/H+ antiporter 1594478 4596319 Noca_1503 Nocardioides sp. JS614 NhaP-type Na+/H+ and K+/H+ antiporter YP_922704.1 1593801 D 196162 CDS YP_922705.1 119715740 4596320 1594728..1595699 1 NC_008699.1 catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 1595699 4596320 Noca_1504 Nocardioides sp. JS614 carbamate kinase YP_922705.1 1594728 D 196162 CDS YP_922706.1 119715741 4596321 1595729..1596844 1 NC_008699.1 KEGG: rha:RHA1_ro05296 cyanuric acid amidohydrolase; barbiturase 1596844 4596321 Noca_1505 Nocardioides sp. JS614 barbiturase YP_922706.1 1595729 D 196162 CDS YP_922707.1 119715742 4596322 complement(1597015..1598172) 1 NC_008699.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rha:RHA1_ro02936 probable formyl-CoA transferase; L-carnitine dehydratase/bile acid-inducible protein F 1598172 4596322 Noca_1506 Nocardioides sp. JS614 L-carnitine dehydratase/bile acid-inducible protein F YP_922707.1 1597015 R 196162 CDS YP_922708.1 119715743 4595658 complement(1598244..1598819) 1 NC_008699.1 PFAM: ThiJ/PfpI domain protein; KEGG: bca:BCE_2883 hypothetical protein; ThiJ/PfpI domain-containing protein 1598819 4595658 Noca_1507 Nocardioides sp. JS614 ThiJ/PfpI domain-containing protein YP_922708.1 1598244 R 196162 CDS YP_922709.1 119715744 4595659 1598940..1602122 1 NC_008699.1 PFAM: UvrD/REP helicase; KEGG: sco:SCO5183 ATP-dependent DNA helicase; UvrD/REP helicase 1602122 4595659 Noca_1508 Nocardioides sp. JS614 UvrD/REP helicase YP_922709.1 1598940 D 196162 CDS YP_922710.1 119715745 4595660 1602119..1605340 1 NC_008699.1 PFAM: UvrD/REP helicase; KEGG: fra:Francci3_3799 UvrD/REP helicase; UvrD/REP helicase 1605340 4595660 Noca_1509 Nocardioides sp. JS614 UvrD/REP helicase YP_922710.1 1602119 D 196162 CDS YP_922711.1 119715746 4595661 1605404..1605994 1 NC_008699.1 hypothetical protein 1605994 4595661 Noca_1510 Nocardioides sp. JS614 hypothetical protein YP_922711.1 1605404 D 196162 CDS YP_922712.1 119715747 4595662 1605994..1606788 1 NC_008699.1 hypothetical protein 1606788 4595662 Noca_1511 Nocardioides sp. JS614 hypothetical protein YP_922712.1 1605994 D 196162 CDS YP_922713.1 119715748 4595663 complement(1606846..1607916) 1 NC_008699.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sma:SAV1562 oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1607916 4595663 Noca_1512 Nocardioides sp. JS614 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_922713.1 1606846 R 196162 CDS YP_922714.1 119715749 4595664 complement(1607944..1608675) 1 NC_008699.1 TIGRFAM: purine nucleoside phosphorylase; PFAM: purine and other phosphorylases, family 1; KEGG: oih:OB2345 purine nucleoside phosphorylase; purine-nucleoside phosphorylase 1608675 4595664 Noca_1513 Nocardioides sp. JS614 purine-nucleoside phosphorylase YP_922714.1 1607944 R 196162 CDS YP_922715.1 119715750 4595665 1608707..1609630 1 NC_008699.1 PFAM: NUDIX hydrolase; KEGG: tfu:Tfu_0527 conserved hypothetical protein; NUDIX hydrolase 1609630 4595665 Noca_1514 Nocardioides sp. JS614 NUDIX hydrolase YP_922715.1 1608707 D 196162 CDS YP_922716.1 119715751 4595666 complement(1609728..1609976) 1 NC_008699.1 TIGRFAM: Glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: sco:SCO5187 glutaredoxin-like protein; glutaredoxin-like protein 1609976 4595666 Noca_1515 Nocardioides sp. JS614 glutaredoxin-like protein YP_922716.1 1609728 R 196162 CDS YP_922717.1 119715752 4595667 1610054..1612120 1 NC_008699.1 PFAM: UvrD/REP helicase; HRDC domain protein; KEGG: sco:SCO5188 putative ATP-dependent DNA helicase; UvrD/REP helicase 1612120 4595667 Noca_1516 Nocardioides sp. JS614 UvrD/REP helicase YP_922717.1 1610054 D 196162 CDS YP_922718.1 119715753 4595668 1612695..1613018 1 NC_008699.1 PFAM: HMG-I and HMG-Y, DNA-binding domain protein; transcription factor WhiB; KEGG: sco:SCO5190 DNA-binding protein; transcription factor WhiB 1613018 4595668 Noca_1517 Nocardioides sp. JS614 transcription factor WhiB YP_922718.1 1612695 D 196162 CDS YP_922719.1 119715754 4595669 complement(1613083..1613421) 1 NC_008699.1 hypothetical protein 1613421 4595669 Noca_1518 Nocardioides sp. JS614 hypothetical protein YP_922719.1 1613083 R 196162 CDS YP_922720.1 119715755 4595670 complement(1613807..1614556) 1 NC_008699.1 KEGG: mmc:Mmcs_1412 hypothetical protein; hypothetical protein 1614556 4595670 Noca_1519 Nocardioides sp. JS614 hypothetical protein YP_922720.1 1613807 R 196162 CDS YP_922721.1 119715756 4595671 complement(1614709..1614867) 1 NC_008699.1 KEGG: fra:Francci3_1839 hypothetical protein; hypothetical protein 1614867 4595671 Noca_1520 Nocardioides sp. JS614 hypothetical protein YP_922721.1 1614709 R 196162 CDS YP_922722.1 119715757 4595672 1615060..1615899 1 NC_008699.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rme:Rmet_5150 enoyl-CoA hydratase/isomerase; short chain enoyl-CoA hydratase / enoyl-CoA hydratase 1615899 4595672 Noca_1521 Nocardioides sp. JS614 short chain enoyl-CoA hydratase / enoyl-CoA hydratase YP_922722.1 1615060 D 196162 CDS YP_922723.1 119715758 4595673 1616182..1617318 1 NC_008699.1 PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: nfa:nfa41810 hypothetical protein; hypothetical protein 1617318 4595673 Noca_1522 Nocardioides sp. JS614 hypothetical protein YP_922723.1 1616182 D 196162 CDS YP_922724.1 119715759 4595674 1617343..1617855 1 NC_008699.1 PFAM: protein of unknown function DUF45; KEGG: sco:SCO5194 hypothetical protein; hypothetical protein 1617855 4595674 Noca_1523 Nocardioides sp. JS614 hypothetical protein YP_922724.1 1617343 D 196162 CDS YP_922725.1 119715760 4595675 complement(1617852..1618418) 1 NC_008699.1 PFAM: NUDIX hydrolase; KEGG: tfu:Tfu_0535 hypothetical protein; NUDIX hydrolase 1618418 4595675 Noca_1524 Nocardioides sp. JS614 NUDIX hydrolase YP_922725.1 1617852 R 196162 CDS YP_922726.1 119715761 4595676 complement(1618415..1619758) 1 NC_008699.1 KEGG: sma:SAV3061 hypothetical protein; hypothetical protein 1619758 4595676 Noca_1525 Nocardioides sp. JS614 hypothetical protein YP_922726.1 1618415 R 196162 CDS YP_922727.1 119715762 4595677 1619817..1620242 1 NC_008699.1 PFAM: molybdopterin biosynthesis MoaE; KEGG: sma:SAV3059 putative molybdopterin biosynthesis protein E; molybdopterin synthase subunit MoaE 1620242 4595677 Noca_1526 Nocardioides sp. JS614 molybdopterin synthase subunit MoaE YP_922727.1 1619817 D 196162 CDS YP_922728.1 119715763 4595678 1620363..1620614 1 NC_008699.1 hypothetical protein 1620614 4595678 Noca_1527 Nocardioides sp. JS614 hypothetical protein YP_922728.1 1620363 D 196162 CDS YP_922729.1 119715764 4595679 1620638..1621702 1 NC_008699.1 PFAM: PDZ/DHR/GLGF domain protein; KEGG: fal:FRAAL6029 putative secreted protein; PDZ/DHR/GLGF domain-containing protein 1621702 4595679 Noca_1528 Nocardioides sp. JS614 PDZ/DHR/GLGF domain-containing protein YP_922729.1 1620638 D 196162 CDS YP_922730.1 119715765 4595680 1621699..1622307 1 NC_008699.1 KEGG: sma:SAV3056 hypothetical protein; hypothetical protein 1622307 4595680 Noca_1529 Nocardioides sp. JS614 hypothetical protein YP_922730.1 1621699 D 196162 CDS YP_922731.1 119715766 4595681 1622315..1625329 1 NC_008699.1 PFAM: protein of unknown function UPF0182; KEGG: sco:SCO5204 integral membrane protein; hypothetical protein 1625329 4595681 Noca_1530 Nocardioides sp. JS614 hypothetical protein YP_922731.1 1622315 D 196162 CDS YP_922732.1 119715767 4595683 complement(1626088..1627305) 1 NC_008699.1 PFAM: major facilitator superfamily MFS_1; KEGG: bpm:BURPS1710b_A1561 light regulation of gametogenesis6 protein; major facilitator transporter 1627305 4595683 Noca_1531 Nocardioides sp. JS614 major facilitator transporter YP_922732.1 1626088 R 196162 CDS YP_922733.1 119715768 4595684 complement(1627316..1628674) 1 NC_008699.1 TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: rha:RHA1_ro03075 probable chromate transporter, chromate ion transporter family; chromate transporter 1628674 4595684 Noca_1532 Nocardioides sp. JS614 chromate transporter YP_922733.1 1627316 R 196162 CDS YP_922734.1 119715769 4595685 complement(1628699..1629124) 1 NC_008699.1 KEGG: rha:RHA1_ro03074 probable chromate resistance protein; putative chromate resistance protein 1629124 4595685 Noca_1533 Nocardioides sp. JS614 putative chromate resistance protein YP_922734.1 1628699 R 196162 CDS YP_922735.1 119715770 4595686 complement(1629121..1629666) 1 NC_008699.1 KEGG: rha:RHA1_ro03073 possible chromate resistance protein; hypothetical protein 1629666 4595686 Noca_1534 Nocardioides sp. JS614 hypothetical protein YP_922735.1 1629121 R 196162 CDS YP_922736.1 119715771 4595687 1629684..1630727 1 NC_008699.1 KEGG: rha:RHA1_ro03072 possible surface antigen protein; putative surface antigen protein 1630727 4595687 Noca_1535 Nocardioides sp. JS614 putative surface antigen protein YP_922736.1 1629684 D 196162 CDS YP_922737.1 119715772 4595688 1630819..1631049 1 NC_008699.1 TIGRFAM: DNA binding domain, excisionase family; KEGG: rxy:Rxyl_1923 phage transcriptional regulator, AlpA; DNA binding domain-containing protein 1631049 4595688 Noca_1536 Nocardioides sp. JS614 DNA binding domain-containing protein YP_922737.1 1630819 D 196162 CDS YP_922738.1 119715773 4595689 1631277..1631864 1 NC_008699.1 hypothetical protein 1631864 4595689 Noca_1537 Nocardioides sp. JS614 hypothetical protein YP_922738.1 1631277 D 196162 CDS YP_922739.1 119715774 4595690 1631858..1632799 1 NC_008699.1 KEGG: fra:Francci3_1784 hypothetical protein; hypothetical protein 1632799 4595690 Noca_1538 Nocardioides sp. JS614 hypothetical protein YP_922739.1 1631858 D 196162 CDS YP_922740.1 119715775 4595691 1632796..1633488 1 NC_008699.1 PFAM: SAF domain; KEGG: sco:SCP1.167 hypothetical protein; SAF domain-containing protein 1633488 4595691 Noca_1539 Nocardioides sp. JS614 SAF domain-containing protein YP_922740.1 1632796 D 196162 CDS YP_922741.1 119715776 4595692 1633488..1634294 1 NC_008699.1 KEGG: sco:SCO4525 hypothetical protein; hypothetical protein 1634294 4595692 Noca_1540 Nocardioides sp. JS614 hypothetical protein YP_922741.1 1633488 D 196162 CDS YP_922742.1 119715777 4595481 1634291..1635604 1 NC_008699.1 PFAM: type II secretion system protein E; KEGG: sco:SCO4526 protein kinase; type II secretion system protein E 1635604 4595481 Noca_1541 Nocardioides sp. JS614 type II secretion system protein E YP_922742.1 1634291 D 196162 CDS YP_922743.1 119715778 4595482 1635595..1636494 1 NC_008699.1 KEGG: sco:SCO4527 integral membrane protein; integral membrane protein 1636494 4595482 Noca_1542 Nocardioides sp. JS614 integral membrane protein YP_922743.1 1635595 D 196162 CDS YP_922744.1 119715779 4595483 1636491..1637393 1 NC_008699.1 PFAM: type II secretion system protein; KEGG: sco:SCO4528 integral membrane protein; type II secretion system protein 1637393 4595483 Noca_1543 Nocardioides sp. JS614 type II secretion system protein YP_922744.1 1636491 D 196162 CDS YP_922745.1 119715780 4595484 1637416..1637604 1 NC_008699.1 hypothetical protein 1637604 4595484 Noca_1544 Nocardioides sp. JS614 hypothetical protein YP_922745.1 1637416 D 196162 CDS YP_922746.1 119715781 4595485 1637616..1638002 1 NC_008699.1 KEGG: fra:Francci3_1733 putative membrane protein; hypothetical protein 1638002 4595485 Noca_1545 Nocardioides sp. JS614 hypothetical protein YP_922746.1 1637616 D 196162 CDS YP_922747.1 119715782 4595486 1637999..1638412 1 NC_008699.1 PFAM: TadE family protein; KEGG: sco:SCP1.174 hypothetical protein; TadE family protein 1638412 4595486 Noca_1546 Nocardioides sp. JS614 TadE family protein YP_922747.1 1637999 D 196162 CDS YP_922748.1 119715783 4595487 1638409..1638816 1 NC_008699.1 KEGG: fra:Francci3_3328 putative membrane protein; hypothetical protein 1638816 4595487 Noca_1547 Nocardioides sp. JS614 hypothetical protein YP_922748.1 1638409 D 196162 CDS YP_922749.1 119715784 4595488 1638813..1641968 1 NC_008699.1 PFAM: Peptidoglycan-binding LysM; KEGG: sma:SAV192 hypothetical protein; peptidoglycan-binding LysM 1641968 4595488 Noca_1548 Nocardioides sp. JS614 peptidoglycan-binding LysM YP_922749.1 1638813 D 196162 CDS YP_922750.1 119715785 4595489 complement(1642062..1643333) 1 NC_008699.1 PFAM: major facilitator superfamily MFS_1; KEGG: fra:Francci3_2321 major facilitator superfamily MFS_1; major facilitator transporter 1643333 4595489 Noca_1549 Nocardioides sp. JS614 major facilitator transporter YP_922750.1 1642062 R 196162 CDS YP_922751.1 119715786 4595490 complement(1643330..1644064) 1 NC_008699.1 PFAM: polysaccharide deacetylase; KEGG: sco:SCO1129 secreted deacetylase; polysaccharide deacetylase 1644064 4595490 Noca_1550 Nocardioides sp. JS614 polysaccharide deacetylase YP_922751.1 1643330 R 196162 CDS YP_922752.1 119715787 4595491 complement(1644061..1645179) 1 NC_008699.1 KEGG: sco:SCO1126 hypothetical protein; hypothetical protein 1645179 4595491 Noca_1551 Nocardioides sp. JS614 hypothetical protein YP_922752.1 1644061 R 196162 CDS YP_922753.1 119715788 4595492 complement(1645263..1645913) 1 NC_008699.1 KEGG: pac:PPA2014 conserved membrane protein (DedA family); DedA family membrane protein 1645913 4595492 Noca_1552 Nocardioides sp. JS614 DedA family membrane protein YP_922753.1 1645263 R 196162 CDS YP_922754.1 119715789 4595493 1646203..1646826 1 NC_008699.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: sco:SCO4133 integral membrane protein; undecaprenyl-diphosphatase 1646826 4595493 Noca_1553 Nocardioides sp. JS614 undecaprenyl-diphosphatase YP_922754.1 1646203 D 196162 CDS YP_922755.1 119715790 4595494 1646823..1647563 1 NC_008699.1 KEGG: fal:FRAAL3677 hypothetical protein; putative DedA family membrane protein; hypothetical protein 1647563 4595494 Noca_1554 Nocardioides sp. JS614 hypothetical protein YP_922755.1 1646823 D 196162 CDS YP_922756.1 119715791 4595495 1647779..1649308 1 NC_008699.1 KEGG: sma:SAV1313 hypothetical protein; hypothetical protein 1649308 4595495 Noca_1555 Nocardioides sp. JS614 hypothetical protein YP_922756.1 1647779 D 196162 CDS YP_922757.1 119715792 4595496 1649434..1650414 1 NC_008699.1 KEGG: fra:Francci3_2388 hypothetical protein; hypothetical protein 1650414 4595496 Noca_1556 Nocardioides sp. JS614 hypothetical protein YP_922757.1 1649434 D 196162 CDS YP_922758.1 119715793 4595497 1650477..1651451 1 NC_008699.1 hypothetical protein 1651451 4595497 Noca_1557 Nocardioides sp. JS614 hypothetical protein YP_922758.1 1650477 D 196162 CDS YP_922759.1 119715794 4595498 1651541..1653235 1 NC_008699.1 KEGG: bbr:BB1276 putative integral membrane protein; hypothetical protein 1653235 4595498 Noca_1558 Nocardioides sp. JS614 hypothetical protein YP_922759.1 1651541 D 196162 CDS YP_922760.1 119715795 4595499 1653232..1653918 1 NC_008699.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: fra:Francci3_2401 two component transcriptional regulator, winged helix family; response regulator receiver 1653918 4595499 Noca_1559 Nocardioides sp. JS614 response regulator receiver YP_922760.1 1653232 D 196162 CDS YP_922761.1 119715796 4595500 1653915..1655375 1 NC_008699.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: fal:FRAAL3820 putative transmembrane sensory transduction histidine kinase for metal resistance; ATPase domain-containing protein 1655375 4595500 Noca_1560 Nocardioides sp. JS614 ATPase domain-containing protein YP_922761.1 1653915 D 196162 CDS YP_922762.1 119715797 4595501 1655454..1656503 1 NC_008699.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: vpa:VP2408 hypothetical protein; PA-phosphatase-like phosphoesterase 1656503 4595501 Noca_1561 Nocardioides sp. JS614 PA-phosphatase-like phosphoesterase YP_922762.1 1655454 D 196162 CDS YP_922763.1 119715798 4595502 1656560..1657336 1 NC_008699.1 PFAM: glycosyl transferase, family 2; KEGG: fra:Francci3_2271 dolichyl-phosphate beta-D-mannosyltransferase; dolichyl-phosphate beta-D-mannosyltransferase 1657336 4595502 Noca_1562 Nocardioides sp. JS614 dolichyl-phosphate beta-D-mannosyltransferase YP_922763.1 1656560 D 196162 CDS YP_922764.1 119715799 4595503 1657333..1659564 1 NC_008699.1 PFAM: glycosyl transferase, group 1; KEGG: mac:MA0798 N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein; group 1 glycosyl transferase 1659564 4595503 Noca_1563 Nocardioides sp. JS614 group 1 glycosyl transferase YP_922764.1 1657333 D 196162 CDS YP_922765.1 119715800 4595504 1659572..1660321 1 NC_008699.1 PFAM: LmbE family protein; KEGG: mpa:MAP2993 hypothetical protein; LmbE family protein 1660321 4595504 Noca_1564 Nocardioides sp. JS614 LmbE family protein YP_922765.1 1659572 D 196162 CDS YP_922766.1 119715801 4595505 1660568..1661371 1 NC_008699.1 hypothetical protein 1661371 4595505 Noca_1565 Nocardioides sp. JS614 hypothetical protein YP_922766.1 1660568 D 196162 CDS YP_922767.1 119715802 4595506 1661368..1661652 1 NC_008699.1 hypothetical protein 1661652 4595506 Noca_1566 Nocardioides sp. JS614 hypothetical protein YP_922767.1 1661368 D 196162 CDS YP_922768.1 119715803 4595507 1661649..1662371 1 NC_008699.1 hypothetical protein 1662371 4595507 Noca_1567 Nocardioides sp. JS614 hypothetical protein YP_922768.1 1661649 D 196162 CDS YP_922769.1 119715804 4595508 1662368..1662640 1 NC_008699.1 hypothetical protein 1662640 4595508 Noca_1568 Nocardioides sp. JS614 hypothetical protein YP_922769.1 1662368 D 196162 CDS YP_922770.1 119715805 4595509 1662640..1663419 1 NC_008699.1 hypothetical protein 1663419 4595509 Noca_1569 Nocardioides sp. JS614 hypothetical protein YP_922770.1 1662640 D 196162 CDS YP_922771.1 119715806 4595510 1663416..1664789 1 NC_008699.1 KEGG: fal:FRAAL0037 hypothetical protein; putative membrane protein; hypothetical protein 1664789 4595510 Noca_1570 Nocardioides sp. JS614 hypothetical protein YP_922771.1 1663416 D 196162 CDS YP_922772.1 119715807 4595511 1664786..1666294 1 NC_008699.1 KEGG: fal:FRAAL0036 putative integral membrane protein; hypothetical protein 1666294 4595511 Noca_1571 Nocardioides sp. JS614 hypothetical protein YP_922772.1 1664786 D 196162 CDS YP_922773.1 119715808 4595512 1666297..1667787 1 NC_008699.1 KEGG: sco:SCO6878 ATP-binding protein; ATP-binding protein 1667787 4595512 Noca_1572 Nocardioides sp. JS614 ATP-binding protein YP_922773.1 1666297 D 196162 CDS YP_922774.1 119715809 4595513 1667791..1668837 1 NC_008699.1 PFAM: peptidase M23B; KEGG: blo:BL0895 narrowly conserved hypothetical protein; peptidase M23B 1668837 4595513 Noca_1573 Nocardioides sp. JS614 peptidase M23B YP_922774.1 1667791 D 196162 CDS YP_922775.1 119715810 4595514 1668842..1669192 1 NC_008699.1 KEGG: rha:RHA1_ro09096 hypothetical protein; hypothetical protein 1669192 4595514 Noca_1574 Nocardioides sp. JS614 hypothetical protein YP_922775.1 1668842 D 196162 CDS YP_922776.1 119715811 4595515 1669238..1669693 1 NC_008699.1 hypothetical protein 1669693 4595515 Noca_1575 Nocardioides sp. JS614 hypothetical protein YP_922776.1 1669238 D 196162 CDS YP_922777.1 119715812 4595516 1669690..1671051 1 NC_008699.1 KEGG: sma:SAV4509 conjugative transfer gene complex protein; Type IV secretory pathway VirD4 components-like protein 1671051 4595516 Noca_1576 Nocardioides sp. JS614 Type IV secretory pathway VirD4 components-like protein YP_922777.1 1669690 D 196162 CDS YP_922778.1 119715813 4595517 1671048..1671587 1 NC_008699.1 hypothetical protein 1671587 4595517 Noca_1577 Nocardioides sp. JS614 hypothetical protein YP_922778.1 1671048 D 196162 CDS YP_922779.1 119715814 4595518 complement(1671629..1672627) 1 NC_008699.1 hypothetical protein 1672627 4595518 Noca_1578 Nocardioides sp. JS614 hypothetical protein YP_922779.1 1671629 R 196162 CDS YP_922780.1 119715815 4595519 complement(1672624..1673094) 1 NC_008699.1 KEGG: rpc:RPC_4006 hypothetical protein; hypothetical protein 1673094 4595519 Noca_1579 Nocardioides sp. JS614 hypothetical protein YP_922780.1 1672624 R 196162 CDS YP_922781.1 119715816 4595520 complement(1673181..1678574) 1 NC_008699.1 PFAM: TOPRIM domain protein; DNA primase catalytic core, N-terminal domain; SMART: Toprim sub domain protein; KEGG: mmc:Mmcs_1430 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member-like protein; DNA primase catalytic core 1678574 4595520 Noca_1580 Nocardioides sp. JS614 DNA primase catalytic core YP_922781.1 1673181 R 196162 CDS YP_922782.1 119715817 4596489 complement(1678648..1679652) 1 NC_008699.1 KEGG: sco:SCP1.352 hypothetical protein; hypothetical protein 1679652 4596489 Noca_1581 Nocardioides sp. JS614 hypothetical protein YP_922782.1 1678648 R 196162 CDS YP_922783.1 119715818 4596490 complement(1679672..1681123) 1 NC_008699.1 PFAM: ParB domain protein nuclease; KEGG: rha:RHA1_ro03182 possible chromosome partitioning protein-like protein; nuclease 1681123 4596490 Noca_1582 Nocardioides sp. JS614 nuclease YP_922783.1 1679672 R 196162 CDS YP_922784.1 119715819 4596491 1681780..1682076 1 NC_008699.1 hypothetical protein 1682076 4596491 Noca_1583 Nocardioides sp. JS614 hypothetical protein YP_922784.1 1681780 D 196162 CDS YP_922785.1 119715820 4596492 1682076..1683383 1 NC_008699.1 hypothetical protein 1683383 4596492 Noca_1584 Nocardioides sp. JS614 hypothetical protein YP_922785.1 1682076 D 196162 CDS YP_922786.1 119715821 4596493 complement(1683438..1684562) 1 NC_008699.1 KEGG: pat:Patl_3755 hypothetical protein; hypothetical protein 1684562 4596493 Noca_1585 Nocardioides sp. JS614 hypothetical protein YP_922786.1 1683438 R 196162 CDS YP_922787.1 119715822 4596494 complement(1684674..1685588) 1 NC_008699.1 PFAM: restriction endonuclease; KEGG: mbo:Mb2557c probable restriction system protein MRR; restriction endonuclease 1685588 4596494 Noca_1586 Nocardioides sp. JS614 restriction endonuclease YP_922787.1 1684674 R 196162 CDS YP_922788.1 119715823 4596495 1685758..1686423 1 NC_008699.1 KEGG: stc:str1376 type II restriction-modification system modification subunit; type II restriction-modification system modification subunit 1686423 4596495 Noca_1587 Nocardioides sp. JS614 type II restriction-modification system modification subunit YP_922788.1 1685758 D 196162 CDS YP_922789.1 119715824 4596496 1686416..1689700 1 NC_008699.1 PFAM: type III restriction enzyme, res subunit; SMART: DEAD-like helicases-like; KEGG: spd:SPD_1079 type II restriction endonuclease, putative; type III restriction enzyme, res subunit 1689700 4596496 Noca_1588 Nocardioides sp. JS614 type III restriction enzyme, res subunit YP_922789.1 1686416 D 196162 CDS YP_922790.1 119715825 4596497 1689702..1690757 1 NC_008699.1 PFAM: Eco57I restriction endonuclease; KEGG: stc:str1375 type II restriction-modification system restriction subunit; Eco57I restriction endonuclease 1690757 4596497 Noca_1589 Nocardioides sp. JS614 Eco57I restriction endonuclease YP_922790.1 1689702 D 196162 CDS YP_922791.1 119715826 4596498 complement(1690904..1691500) 1 NC_008699.1 PFAM: phage integrase family protein; KEGG: fal:FRAAL6356 putative tyrosine recombinase XerD; phage integrase family protein 1691500 4596498 Noca_1590 Nocardioides sp. JS614 phage integrase family protein YP_922791.1 1690904 R 196162 CDS YP_922792.1 119715827 4596499 1691527..1691838 1 NC_008699.1 PFAM: transposase IS3/IS911 family protein; KEGG: cef:CE2618 putative transposase; transposase IS3/IS911 family protein 1691838 4596499 Noca_1591 Nocardioides sp. JS614 transposase IS3/IS911 family protein YP_922792.1 1691527 D 196162 CDS YP_922793.1 119715828 4596500 1692054..1692806 1 NC_008699.1 PFAM: Integrase, catalytic region; KEGG: cef:CE2619 putative transposase; integrase catalytic subunit 1692806 4596500 Noca_1592 Nocardioides sp. JS614 integrase catalytic subunit YP_922793.1 1692054 D 196162 CDS YP_922794.1 119715829 4596501 complement(1692831..1693385) 1 NC_008699.1 KEGG: fal:FRAAL6356 putative tyrosine recombinase XerD; putative tyrosine recombinase XerD 1693385 4596501 Noca_1593 Nocardioides sp. JS614 putative tyrosine recombinase XerD YP_922794.1 1692831 R 196162 CDS YP_922795.1 119715830 4596503 complement(1693839..1694123) 1 NC_008699.1 KEGG: sme:SMc02477 hypothetical protein; hypothetical protein 1694123 4596503 Noca_1594 Nocardioides sp. JS614 hypothetical protein YP_922795.1 1693839 R 196162 CDS YP_922796.1 119715831 4599974 complement(1694650..1696026) 1 NC_008699.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: fal:FRAAL0031 conserved hypothetical protein; putative integral membrane protein; PA-phosphatase-like phosphoesterase 1696026 4599974 Noca_1595 Nocardioides sp. JS614 PA-phosphatase-like phosphoesterase YP_922796.1 1694650 R 196162 CDS YP_922797.1 119715832 4599975 complement(1696103..1696507) 1 NC_008699.1 PFAM: mannose-6-phosphate isomerase, type II; Cupin 2, conserved barrel domain protein; KEGG: syn:slr0493 putative mannose-1-phosphate guanylyltransferase; mannose-6-phosphate isomerase 1696507 4599975 Noca_1596 Nocardioides sp. JS614 mannose-6-phosphate isomerase YP_922797.1 1696103 R 196162 CDS YP_922798.1 119715833 4599976 complement(1696557..1697021) 1 NC_008699.1 PFAM: GtrA family protein; KEGG: tfu:Tfu_2548 hypothetical protein; GtrA family protein 1697021 4599976 Noca_1597 Nocardioides sp. JS614 GtrA family protein YP_922798.1 1696557 R 196162 CDS YP_922799.1 119715834 4599977 1697115..1697795 1 NC_008699.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rha:RHA1_ro08012 response regulator, two-component system; response regulator receiver 1697795 4599977 Noca_1598 Nocardioides sp. JS614 response regulator receiver YP_922799.1 1697115 D 196162 CDS YP_922800.1 119715835 4599978 1697792..1699153 1 NC_008699.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rha:RHA1_ro08011 sensory histidine kinase; ATPase domain-containing protein 1699153 4599978 Noca_1599 Nocardioides sp. JS614 ATPase domain-containing protein YP_922800.1 1697792 D 196162 CDS YP_922801.1 119715836 4599979 1699156..1699668 1 NC_008699.1 hypothetical protein 1699668 4599979 Noca_1600 Nocardioides sp. JS614 hypothetical protein YP_922801.1 1699156 D 196162 CDS YP_922802.1 119715837 4599980 complement(1699722..1700594) 1 NC_008699.1 PFAM: protein of unknown function DUF347; KEGG: fal:FRAAL6358 putative integral membrane protein (partial match); hypothetical protein 1700594 4599980 Noca_1601 Nocardioides sp. JS614 hypothetical protein YP_922802.1 1699722 R 196162 CDS YP_922803.1 119715838 4599981 complement(1700591..1702201) 1 NC_008699.1 KEGG: fra:Francci3_2390 glycosyl transferase, family 39; hypothetical protein 1702201 4599981 Noca_1602 Nocardioides sp. JS614 hypothetical protein YP_922803.1 1700591 R 196162 CDS YP_922804.1 119715839 4599982 complement(1702211..1703032) 1 NC_008699.1 PFAM: phosphoesterase; KEGG: fal:FRAAL3218 putative acid phosphatase; phosphatidylinositol-3-phosphate phosphatase 1703032 4599982 Noca_1603 Nocardioides sp. JS614 phosphatidylinositol-3-phosphate phosphatase YP_922804.1 1702211 R 196162 CDS YP_922805.1 119715840 4599983 complement(1703236..1704081) 1 NC_008699.1 PFAM: glycosyl transferase, family 2; KEGG: ade:Adeh_2624 dolichyl-phosphate beta-D-mannosyltransferase; dolichyl-phosphate beta-D-mannosyltransferase 1704081 4599983 Noca_1604 Nocardioides sp. JS614 dolichyl-phosphate beta-D-mannosyltransferase YP_922805.1 1703236 R 196162 CDS YP_922806.1 119715841 4599984 complement(1704201..1706894) 1 NC_008699.1 PFAM: protein of unknown function DUF214; KEGG: sco:SCO6365 putative integral membrane protein; hypothetical protein 1706894 4599984 Noca_1605 Nocardioides sp. JS614 hypothetical protein YP_922806.1 1704201 R 196162 CDS YP_922807.1 119715842 4599985 complement(1706891..1707616) 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rha:RHA1_ro03122 ABC lipoprotein transporter, ATP-binding component; ABC transporter-like protein 1707616 4599985 Noca_1606 Nocardioides sp. JS614 ABC transporter-like protein YP_922807.1 1706891 R 196162 CDS YP_922808.1 119715843 4599986 complement(1707613..1708356) 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO6367 ABC transporter ATP-binding protein; ABC transporter-like protein 1708356 4599986 Noca_1607 Nocardioides sp. JS614 ABC transporter-like protein YP_922808.1 1707613 R 196162 CDS YP_922809.1 119715844 4599987 complement(1708360..1709070) 1 NC_008699.1 KEGG: sco:SCO6368 lipoprotein; lipoprotein 1709070 4599987 Noca_1608 Nocardioides sp. JS614 lipoprotein YP_922809.1 1708360 R 196162 CDS YP_922810.1 119715845 4599988 complement(1709243..1709566) 1 NC_008699.1 KEGG: rha:RHA1_ro08010 hypothetical protein; hypothetical protein 1709566 4599988 Noca_1609 Nocardioides sp. JS614 hypothetical protein YP_922810.1 1709243 R 196162 CDS YP_922811.1 119715846 4599989 1709691..1710389 1 NC_008699.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rha:RHA1_ro08012 response regulator, two-component system; two component transcriptional regulator 1710389 4599989 Noca_1610 Nocardioides sp. JS614 two component transcriptional regulator YP_922811.1 1709691 D 196162 CDS YP_922812.1 119715847 4599990 1710386..1711744 1 NC_008699.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rha:RHA1_ro08011 sensory histidine kinase; ATPase domain-containing protein 1711744 4599990 Noca_1611 Nocardioides sp. JS614 ATPase domain-containing protein YP_922812.1 1710386 D 196162 CDS YP_922813.1 119715848 4599991 complement(1711872..1712303) 1 NC_008699.1 KEGG: sil:SPOA0410 hypothetical protein; hypothetical protein 1712303 4599991 Noca_1612 Nocardioides sp. JS614 hypothetical protein YP_922813.1 1711872 R 196162 CDS YP_922814.1 119715849 4599992 1712465..1713142 1 NC_008699.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rha:RHA1_ro08549 response regulator, two-component system; response regulator receiver 1713142 4599992 Noca_1613 Nocardioides sp. JS614 response regulator receiver YP_922814.1 1712465 D 196162 CDS YP_922815.1 119715850 4599993 1713139..1714506 1 NC_008699.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rha:RHA1_ro00073 sensor kinase, two-component system; ATPase domain-containing protein 1714506 4599993 Noca_1614 Nocardioides sp. JS614 ATPase domain-containing protein YP_922815.1 1713139 D 196162 CDS YP_922816.1 119715851 4599994 complement(1714744..1715850) 1 NC_008699.1 PFAM: phage integrase family protein; KEGG: fal:FRAAL6356 putative tyrosine recombinase XerD; phage integrase family protein 1715850 4599994 Noca_1615 Nocardioides sp. JS614 phage integrase family protein YP_922816.1 1714744 R 196162 CDS YP_922817.1 119715852 4599995 complement(1716341..1716676) 1 NC_008699.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: rha:RHA1_ro08265 possible carboxymuconolactone decarboxylase; alkylhydroperoxidase 1716676 4599995 Noca_1616 Nocardioides sp. JS614 alkylhydroperoxidase YP_922817.1 1716341 R 196162 CDS YP_922818.1 119715853 4599996 complement(1716874..1717815) 1 NC_008699.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: afu:AF2137 hypothetical protein; cation diffusion facilitator family transporter 1717815 4599996 Noca_1617 Nocardioides sp. JS614 cation diffusion facilitator family transporter YP_922818.1 1716874 R 196162 CDS YP_922819.1 119715854 4599997 complement(1717812..1718135) 1 NC_008699.1 KEGG: gme:Gmet_1011 antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 1718135 4599997 Noca_1618 Nocardioides sp. JS614 antibiotic biosynthesis monooxygenase YP_922819.1 1717812 R 196162 CDS YP_922820.1 119715855 4599998 1718289..1718996 1 NC_008699.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: lsl:LSL_1782 transcriptional regulator, crp family; cyclic nucleotide-binding protein 1718996 4599998 Noca_1619 Nocardioides sp. JS614 cyclic nucleotide-binding protein YP_922820.1 1718289 D 196162 CDS YP_922821.1 119715856 4600000 complement(1719444..1720130) 1 NC_008699.1 KEGG: ade:Adeh_0447 hypothetical protein; hypothetical protein 1720130 4600000 Noca_1621 Nocardioides sp. JS614 hypothetical protein YP_922821.1 1719444 R 196162 CDS YP_922822.1 119715857 4600001 1720298..1720888 1 NC_008699.1 PFAM: cytochrome c oxidase, subunit II; KEGG: tdn:Tmden_0103 putative cytochrome c oxidase subunit II; cytochrome c oxidase subunit II 1720888 4600001 Noca_1622 Nocardioides sp. JS614 cytochrome c oxidase subunit II YP_922822.1 1720298 D 196162 CDS YP_922823.1 119715858 4600002 1720885..1722570 1 NC_008699.1 PFAM: cytochrome c oxidase, subunit I; KEGG: tdn:Tmden_0104 cytochrome c oxidase, subunit I; cytochrome c oxidase subunit I 1722570 4600002 Noca_1623 Nocardioides sp. JS614 cytochrome c oxidase subunit I YP_922823.1 1720885 D 196162 CDS YP_922824.1 119715859 4600003 complement(1722627..1724015) 1 NC_008699.1 tryptophan indole-lyase; catalyzes the formation of indole and pyruvate from tryptophan; tryptophanase 1724015 tnaA 4600003 tnaA Nocardioides sp. JS614 tryptophanase YP_922824.1 1722627 R 196162 CDS YP_922825.1 119715860 4600004 1724137..1724583 1 NC_008699.1 PFAM: regulatory protein, AsnC/Lrp family; helix-turn-helix, HxlR type; KEGG: tfu:Tfu_0920 regulatory proteins, AsnC/Lrp; AsnC family transcriptional regulator 1724583 4600004 Noca_1625 Nocardioides sp. JS614 AsnC family transcriptional regulator YP_922825.1 1724137 D 196162 CDS YP_922826.1 119715861 4600005 1724724..1726055 1 NC_008699.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: fra:Francci3_0845 amidohydrolase; amidohydrolase 1726055 4600005 Noca_1626 Nocardioides sp. JS614 amidohydrolase YP_922826.1 1724724 D 196162 CDS YP_922827.1 119715862 4600006 1726096..1727619 1 NC_008699.1 PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: mta:Moth_2000 pyridoxal-5'-phosphate-dependent enzyme, beta subunit; pyridoxal-5'-phosphate-dependent enzyme subunit beta 1727619 4600006 Noca_1627 Nocardioides sp. JS614 pyridoxal-5'-phosphate-dependent enzyme subunit beta YP_922827.1 1726096 D 196162 CDS YP_922828.1 119715863 4600007 1727616..1729001 1 NC_008699.1 PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: hal:VNG2430G threonine synthase; pyridoxal-5'-phosphate-dependent enzyme subunit beta 1729001 4600007 Noca_1628 Nocardioides sp. JS614 pyridoxal-5'-phosphate-dependent enzyme subunit beta YP_922828.1 1727616 D 196162 CDS YP_922829.1 119715864 4600008 1729001..1730425 1 NC_008699.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: mta:Moth_1957 amidohydrolase; amidohydrolase 1730425 4600008 Noca_1629 Nocardioides sp. JS614 amidohydrolase YP_922829.1 1729001 D 196162 CDS YP_922830.1 119715865 4600009 1730422..1731423 1 NC_008699.1 PFAM: luciferase family protein; KEGG: hma:pNG7255 F420-dependent N5,N10-methylene-tetrahydromethanopterin reductase; methylenetetrahydromethanopterin reductase 1731423 4600009 Noca_1630 Nocardioides sp. JS614 methylenetetrahydromethanopterin reductase YP_922830.1 1730422 D 196162 CDS YP_922831.1 119715866 4600010 1731439..1732392 1 NC_008699.1 KEGG: pho:PH0720 aspartate carbamoyltransferase catalytic chain; TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; aspartate carbamoyltransferase 1732392 4600010 Noca_1631 Nocardioides sp. JS614 aspartate carbamoyltransferase YP_922831.1 1731439 D 196162 CDS YP_922832.1 119715867 4600011 1732410..1733393 1 NC_008699.1 PFAM: aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; KEGG: mta:Moth_1996 ornithine carbamoyltransferase; ornithine carbamoyltransferase 1733393 4600011 Noca_1632 Nocardioides sp. JS614 ornithine carbamoyltransferase YP_922832.1 1732410 D 196162 CDS YP_922833.1 119715868 4600012 1733416..1734141 1 NC_008699.1 PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: ecc:c3458 hypothetical protein YgfM; molybdopterin dehydrogenase 1734141 4600012 Noca_1633 Nocardioides sp. JS614 molybdopterin dehydrogenase YP_922833.1 1733416 D 196162 CDS YP_922834.1 119715869 4600013 1734138..1737056 1 NC_008699.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: hma:pNG7246 possible hypoxanthine oxidase XdhD; xanthine dehydrogenase, molybdenum binding subunit apoprotein 1737056 4600013 Noca_1634 Nocardioides sp. JS614 xanthine dehydrogenase, molybdenum binding subunit apoprotein YP_922834.1 1734138 D 196162 CDS YP_922835.1 119715870 4600014 1737070..1738473 1 NC_008699.1 KEGG: sus:Acid_7659 dihydropyrimidinase; TIGRFAM: dihydropyrimidinase; PFAM: amidohydrolase; Amidohydrolase 3; dihydropyrimidinase 1738473 4600014 Noca_1635 Nocardioides sp. JS614 dihydropyrimidinase YP_922835.1 1737070 D 196162 CDS YP_922836.1 119715871 4600015 1738566..1740038 1 NC_008699.1 PFAM: ferredoxin; molybdopterin dehydrogenase, FAD-binding; [2Fe-2S]-binding domain protein; CO dehydrogenase flavoprotein domain protein; KEGG: sco:SCO4971 putative dehydrogenase; molybdopterin dehydrogenase 1740038 4600015 Noca_1636 Nocardioides sp. JS614 molybdopterin dehydrogenase YP_922836.1 1738566 D 196162 CDS YP_922837.1 119715872 4600016 1740035..1742338 1 NC_008699.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: dge:Dgeo_2604 xanthine dehydrogenase; xanthine oxidase 1742338 4600016 Noca_1637 Nocardioides sp. JS614 xanthine oxidase YP_922837.1 1740035 D 196162 CDS YP_922838.1 119715873 4600017 1742340..1743200 1 NC_008699.1 PFAM: protein of unknown function DUF182; KEGG: sco:SCO4973 xanthine dehydrogenase accessory factor; molybdenum cofactor sulfurylase 1743200 4600017 Noca_1638 Nocardioides sp. JS614 molybdenum cofactor sulfurylase YP_922838.1 1742340 D 196162 CDS YP_922839.1 119715874 4600018 complement(1743236..1744234) 1 NC_008699.1 KEGG: mxa:MXAN_7473 hypothetical protein; hypothetical protein 1744234 4600018 Noca_1639 Nocardioides sp. JS614 hypothetical protein YP_922839.1 1743236 R 196162 CDS YP_922840.1 119715875 4600019 complement(1744326..1745627) 1 NC_008699.1 PFAM: protein of unknown function DUF323; KEGG: bbr:BB1966 hypothetical protein; hypothetical protein 1745627 4600019 Noca_1640 Nocardioides sp. JS614 hypothetical protein YP_922840.1 1744326 R 196162 CDS YP_922841.1 119715876 4600020 complement(1745761..1746564) 1 NC_008699.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: rxy:Rxyl_1332 transcriptional regulator, Crp/Fnr family; cyclic nucleotide-binding protein 1746564 4600020 Noca_1641 Nocardioides sp. JS614 cyclic nucleotide-binding protein YP_922841.1 1745761 R 196162 CDS YP_922842.1 119715877 4600021 complement(1746657..1747259) 1 NC_008699.1 hypothetical protein 1747259 4600021 Noca_1642 Nocardioides sp. JS614 hypothetical protein YP_922842.1 1746657 R 196162 CDS YP_922843.1 119715878 4600022 1747388..1747933 1 NC_008699.1 hypothetical protein 1747933 4600022 Noca_1643 Nocardioides sp. JS614 hypothetical protein YP_922843.1 1747388 D 196162 CDS YP_922844.1 119715879 4600023 complement(1747943..1748263) 1 NC_008699.1 PFAM: protein of unknown function DUF427; KEGG: dge:Dgeo_1745 protein of unknown function DUF427; hypothetical protein 1748263 4600023 Noca_1644 Nocardioides sp. JS614 hypothetical protein YP_922844.1 1747943 R 196162 CDS YP_922845.1 119715880 4600024 1748427..1749158 1 NC_008699.1 TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sco:SCO3446 putative dehalogenase; haloacid dehalogenase 1749158 4600024 Noca_1645 Nocardioides sp. JS614 haloacid dehalogenase YP_922845.1 1748427 D 196162 CDS YP_922846.1 119715881 4600025 complement(1749234..1749635) 1 NC_008699.1 PFAM: regulatory protein, MerR; KEGG: mbo:Mb3367 probable transcriptional regulatory protein (probably MerR-family); MerR family transcriptional regulator 1749635 4600025 Noca_1646 Nocardioides sp. JS614 MerR family transcriptional regulator YP_922846.1 1749234 R 196162 CDS YP_922847.1 119715882 4600026 1749690..1749989 1 NC_008699.1 KEGG: nfa:pnf2590 putative alkylmercury lyase; putative alkylmercury lyase 1749989 4600026 Noca_1647 Nocardioides sp. JS614 putative alkylmercury lyase YP_922847.1 1749690 D 196162 CDS YP_922848.1 119715883 4600027 1750214..1751566 1 NC_008699.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: sep:SE0080 regulatory protein; pyridine nucleotide-disulfide oxidoreductase dimerisation region 1751566 4600027 Noca_1648 Nocardioides sp. JS614 pyridine nucleotide-disulfide oxidoreductase dimerisation region YP_922848.1 1750214 D 196162 CDS YP_922849.1 119715884 4600028 complement(1751756..1752775) 1 NC_008699.1 catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate; 4-hydroxy-2-ketovalerate aldolase 1752775 4600028 Noca_1649 Nocardioides sp. JS614 4-hydroxy-2-ketovalerate aldolase YP_922849.1 1751756 R 196162 CDS YP_922850.1 119715885 4600029 complement(1752772..1753716) 1 NC_008699.1 catalyzes the formation of acetyl-CoA from acetalaldehyde; acetaldehyde dehydrogenase 1753716 4600029 Noca_1650 Nocardioides sp. JS614 acetaldehyde dehydrogenase YP_922850.1 1752772 R 196162 CDS YP_922851.1 119715886 4600030 complement(1753709..1754536) 1 NC_008699.1 PFAM: Hydratase/decarboxylase; KEGG: nfa:nfa33180 putative hydratase; 4-oxalocrotonate decarboxylase 1754536 4600030 Noca_1651 Nocardioides sp. JS614 4-oxalocrotonate decarboxylase YP_922851.1 1753709 R 196162 CDS YP_922852.1 119715887 4600031 1754606..1755379 1 NC_008699.1 PFAM: regulatory proteins, IclR; KEGG: rha:RHA1_ro08086 transcriptional regulator, IclR family; IclR family transcriptional regulator 1755379 4600031 Noca_1652 Nocardioides sp. JS614 IclR family transcriptional regulator YP_922852.1 1754606 D 196162 CDS YP_922853.1 119715888 4600032 complement(1755422..1755973) 1 NC_008699.1 hypothetical protein 1755973 4600032 Noca_1653 Nocardioides sp. JS614 hypothetical protein YP_922853.1 1755422 R 196162 CDS YP_922854.1 119715889 4600033 complement(1756107..1757177) 1 NC_008699.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: cjk:jk0549 putative lipase/esterase LipN; alpha/beta hydrolase domain-containing protein 1757177 4600033 Noca_1654 Nocardioides sp. JS614 alpha/beta hydrolase domain-containing protein YP_922854.1 1756107 R 196162 CDS YP_922855.1 119715890 4600034 complement(1757174..1758823) 1 NC_008699.1 PFAM: carbohydrate kinase, FGGY; KEGG: mxa:MXAN_2879 putative xylulokinase; carbohydrate kinase 1758823 4600034 Noca_1655 Nocardioides sp. JS614 carbohydrate kinase YP_922855.1 1757174 R 196162 CDS YP_922856.1 119715891 4600035 complement(1758820..1761081) 1 NC_008699.1 PFAM: class II aldolase/adducin family protein; aminotransferase class-III; KEGG: psp:PSPPH_2738 glutamate-1-semialdehyde aminotransferase; aminotransferase 1761081 4600035 Noca_1656 Nocardioides sp. JS614 aminotransferase YP_922856.1 1758820 R 196162 CDS YP_922857.1 119715892 4600036 1761215..1762474 1 NC_008699.1 KEGG: fra:Francci3_3797 hypothetical protein; hypothetical protein 1762474 4600036 Noca_1657 Nocardioides sp. JS614 hypothetical protein YP_922857.1 1761215 D 196162 CDS YP_922858.1 119715893 4600037 1762485..1763861 1 NC_008699.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 1763861 4600037 Noca_1658 Nocardioides sp. JS614 glutamate dehydrogenase YP_922858.1 1762485 D 196162 CDS YP_922859.1 119715894 4600038 complement(1763879..1764436) 1 NC_008699.1 hypothetical protein 1764436 4600038 Noca_1659 Nocardioides sp. JS614 hypothetical protein YP_922859.1 1763879 R 196162 CDS YP_922860.1 119715895 4600039 complement(1764517..1765302) 1 NC_008699.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: rxy:Rxyl_1803 transcriptional regulator, Crp/Fnr family; Crp/FNR family transcriptional regulator 1765302 4600039 Noca_1660 Nocardioides sp. JS614 Crp/FNR family transcriptional regulator YP_922860.1 1764517 R 196162 CDS YP_922861.1 119715896 4600040 1765427..1765759 1 NC_008699.1 KEGG: sco:SCO4689 hypothetical protein; hypothetical protein 1765759 4600040 Noca_1661 Nocardioides sp. JS614 hypothetical protein YP_922861.1 1765427 D 196162 CDS YP_922862.1 119715897 4600041 complement(1765774..1767744) 1 NC_008699.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: cgb:cg3295 cation transport ATPase; heavy metal translocating P-type ATPase 1767744 4600041 Noca_1662 Nocardioides sp. JS614 heavy metal translocating P-type ATPase YP_922862.1 1765774 R 196162 CDS YP_922863.1 119715898 4600042 complement(1767744..1767977) 1 NC_008699.1 PFAM: Heavy metal transport/detoxification protein; KEGG: cgb:cg1328 putative copper chaperone; heavy metal transport/detoxification protein 1767977 4600042 Noca_1663 Nocardioides sp. JS614 heavy metal transport/detoxification protein YP_922863.1 1767744 R 196162 CDS YP_922864.1 119715899 4600043 complement(1768207..1768776) 1 NC_008699.1 PFAM: regulatory protein, TetR; KEGG: mmc:Mmcs_0484 transcriptional regulator, TetR family; TetR family transcriptional regulator 1768776 4600043 Noca_1664 Nocardioides sp. JS614 TetR family transcriptional regulator YP_922864.1 1768207 R 196162 CDS YP_922865.1 119715900 4600044 1768867..1769817 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rha:RHA1_ro06063 probable ABC transporter, ATP-binding component; ABC transporter-like protein 1769817 4600044 Noca_1665 Nocardioides sp. JS614 ABC transporter-like protein YP_922865.1 1768867 D 196162 CDS YP_922866.1 119715901 4600045 1769814..1771460 1 NC_008699.1 KEGG: rha:RHA1_ro06064 possible ABC antibiotics transporter; putative ABC antibiotics transporter 1771460 4600045 Noca_1666 Nocardioides sp. JS614 putative ABC antibiotics transporter YP_922866.1 1769814 D 196162 CDS YP_922867.1 119715902 4600046 1771554..1772630 1 NC_008699.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; KEGG: sru:SRU_2653 3-beta hydroxysteroid dehydrogenase/isomerase family; hypothetical protein 1772630 4600046 Noca_1667 Nocardioides sp. JS614 hypothetical protein YP_922867.1 1771554 D 196162 CDS YP_922868.1 119715903 4600047 1772642..1774711 1 NC_008699.1 KEGG: rfr:Rfer_1964 putative dehydrogenase; putative dehydrogenase 1774711 4600047 Noca_1668 Nocardioides sp. JS614 putative dehydrogenase YP_922868.1 1772642 D 196162 CDS YP_922869.1 119715904 4600048 1774808..1776280 1 NC_008699.1 PFAM: condensation domain protein; protein of unknown function UPF0089; KEGG: sru:SRU_2506 uncharacterized protein family (UPF0089); diacylglycerol O-acyltransferase 1776280 4600048 Noca_1669 Nocardioides sp. JS614 diacylglycerol O-acyltransferase YP_922869.1 1774808 D 196162 CDS YP_922870.1 119715905 4599709 complement(1776309..1778561) 1 NC_008699.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: mag:amb3735 signal transduction histidine kinase; ATPase domain-containing protein 1778561 4599709 Noca_1670 Nocardioides sp. JS614 ATPase domain-containing protein YP_922870.1 1776309 R 196162 CDS YP_922871.1 119715906 4599710 complement(1778558..1778926) 1 NC_008699.1 hypothetical protein 1778926 4599710 Noca_1671 Nocardioides sp. JS614 hypothetical protein YP_922871.1 1778558 R 196162 CDS YP_922872.1 119715907 4599711 complement(1779100..1779303) 1 NC_008699.1 KEGG: mmr:Mmar10_0244 hypothetical protein; hypothetical protein 1779303 4599711 Noca_1672 Nocardioides sp. JS614 hypothetical protein YP_922872.1 1779100 R 196162 CDS YP_922873.1 119715908 4599712 1779463..1780098 1 NC_008699.1 KEGG: mes:Meso_2289 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; hypothetical protein 1780098 4599712 Noca_1673 Nocardioides sp. JS614 hypothetical protein YP_922873.1 1779463 D 196162 CDS YP_922874.1 119715909 4599713 complement(1780167..1780985) 1 NC_008699.1 KEGG: bha:BH0230 hypothetical protein; hypothetical protein 1780985 4599713 Noca_1674 Nocardioides sp. JS614 hypothetical protein YP_922874.1 1780167 R 196162 CDS YP_922875.1 119715910 4599714 1781277..1783448 1 NC_008699.1 PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like; KEGG: lxx:Lxx07490 ATP-dependent RNA helicase; helicase domain-containing protein 1783448 4599714 Noca_1675 Nocardioides sp. JS614 helicase domain-containing protein YP_922875.1 1781277 D 196162 CDS YP_922876.1 119715911 4599715 1783525..1784049 1 NC_008699.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rha:RHA1_ro01261 sigma factor, sigma 70 type, group 4; sigma-70 region 2 domain-containing protein 1784049 4599715 Noca_1676 Nocardioides sp. JS614 sigma-70 region 2 domain-containing protein YP_922876.1 1783525 D 196162 CDS YP_922877.1 119715912 4599716 1784046..1784765 1 NC_008699.1 KEGG: rha:RHA1_ro01260 possible membrane protein; hypothetical protein 1784765 4599716 Noca_1677 Nocardioides sp. JS614 hypothetical protein YP_922877.1 1784046 D 196162 CDS YP_922878.1 119715913 4599717 complement(1784755..1786737) 1 NC_008699.1 PFAM: CDP-alcohol phosphatidyltransferase; sulfatase; KEGG: sma:SAV5650 hypothetical protein; CDP-alcohol phosphatidyltransferase 1786737 4599717 Noca_1678 Nocardioides sp. JS614 CDP-alcohol phosphatidyltransferase YP_922878.1 1784755 R 196162 CDS YP_922879.1 119715914 4599718 1786828..1787910 1 NC_008699.1 KEGG: sma:SAV1797 dehydrogenase; dehydrogenase 1787910 4599718 Noca_1679 Nocardioides sp. JS614 dehydrogenase YP_922879.1 1786828 D 196162 CDS YP_922880.1 119715915 4599719 1787907..1788278 1 NC_008699.1 KEGG: sco:SCO6650 hypothetical protein; hypothetical protein 1788278 4599719 Noca_1680 Nocardioides sp. JS614 hypothetical protein YP_922880.1 1787907 D 196162 CDS YP_922881.1 119715916 4599720 1788275..1789186 1 NC_008699.1 PFAM: glycosyl transferase, group 1; KEGG: sma:SAV1795 glycosyl transferase; group 1 glycosyl transferase 1789186 4599720 Noca_1681 Nocardioides sp. JS614 group 1 glycosyl transferase YP_922881.1 1788275 D 196162 CDS YP_922882.1 119715917 4599721 1789261..1790007 1 NC_008699.1 KEGG: sma:SAV1793 hypothetical protein; hypothetical protein 1790007 4599721 Noca_1682 Nocardioides sp. JS614 hypothetical protein YP_922882.1 1789261 D 196162 CDS YP_922883.1 119715918 4599722 1790000..1790695 1 NC_008699.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: nfa:nfa33100 putative riboflavin-specific deaminase; deaminase-reductase domain-containing protein 1790695 4599722 Noca_1683 Nocardioides sp. JS614 deaminase-reductase domain-containing protein YP_922883.1 1790000 D 196162 CDS YP_922884.1 119715919 4599723 1790692..1791294 1 NC_008699.1 catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 1791294 ribA 4599723 ribA Nocardioides sp. JS614 GTP cyclohydrolase II YP_922884.1 1790692 D 196162 CDS YP_922885.1 119715920 4599724 complement(1791391..1793307) 1 NC_008699.1 TIGRFAM: peptidase S26B, signal peptidase; PFAM: cellulose-binding, family II; peptidase S24, S26A and S26B; KEGG: rpd:RPD_3003 outer membrane autotransporter barrel; peptidase S26B, signal peptidase 1793307 4599724 Noca_1685 Nocardioides sp. JS614 peptidase S26B, signal peptidase YP_922885.1 1791391 R 196162 CDS YP_922886.1 119715921 4599725 complement(1793326..1793736) 1 NC_008699.1 hypothetical protein 1793736 4599725 Noca_1686 Nocardioides sp. JS614 hypothetical protein YP_922886.1 1793326 R 196162 CDS YP_922887.1 119715922 4599726 complement(1793938..1794663) 1 NC_008699.1 KEGG: cne:CND01740 ceramidase; hypothetical protein 1794663 4599726 Noca_1687 Nocardioides sp. JS614 hypothetical protein YP_922887.1 1793938 R 196162 CDS YP_922888.1 119715923 4599727 1794738..1796213 1 NC_008699.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: ade:Adeh_2233 transcriptional regulator, GntR family; GntR family transcriptional regulator 1796213 4599727 Noca_1688 Nocardioides sp. JS614 GntR family transcriptional regulator YP_922888.1 1794738 D 196162 CDS YP_922889.1 119715924 4599728 complement(1796110..1797438) 1 NC_008699.1 PFAM: amino acid permease-associated region; KEGG: bte:BTH_II1129 amino acid permease; amino acid permease-associated protein 1797438 4599728 Noca_1689 Nocardioides sp. JS614 amino acid permease-associated protein YP_922889.1 1796110 R 196162 CDS YP_922890.1 119715925 4599729 complement(1797524..1799125) 1 NC_008699.1 KEGG: mxa:MXAN_6640 hypothetical protein; hypothetical protein 1799125 4599729 Noca_1690 Nocardioides sp. JS614 hypothetical protein YP_922890.1 1797524 R 196162 CDS YP_922891.1 119715926 4599730 complement(1799236..1799634) 1 NC_008699.1 TIGRFAM: cytidyltransferase-related domain; PFAM: Riboflavin kinase / FAD synthetase; cytidylyltransferase; KEGG: ppr:PBPRA2703 putative glycerol-3-phosphate cytidyltransferase; glycerol-3-phosphate cytidylyltransferase 1799634 4599730 Noca_1691 Nocardioides sp. JS614 glycerol-3-phosphate cytidylyltransferase YP_922891.1 1799236 R 196162 CDS YP_922892.1 119715927 4599731 1799680..1800942 1 NC_008699.1 PFAM: protein of unknown function DUF445; KEGG: fra:Francci3_2863 protein of unknown function DUF445; hypothetical protein 1800942 4599731 Noca_1692 Nocardioides sp. JS614 hypothetical protein YP_922892.1 1799680 D 196162 CDS YP_922893.1 119715928 4599732 1800947..1801201 1 NC_008699.1 PFAM: RNA-binding S4 domain protein; KEGG: rha:RHA1_ro03734 hypothetical protein; RNA-binding S4 domain-containing protein 1801201 4599732 Noca_1693 Nocardioides sp. JS614 RNA-binding S4 domain-containing protein YP_922893.1 1800947 D 196162 CDS YP_922894.1 119715929 4599733 complement(1801287..1801655) 1 NC_008699.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: sma:SAV6687 putative FK-506 binding protein, peptidyl-prolyl cis-trans isomerase; FKBP-type peptidylprolyl isomerase 1801655 4599733 Noca_1694 Nocardioides sp. JS614 FKBP-type peptidylprolyl isomerase YP_922894.1 1801287 R 196162 CDS YP_922895.1 119715930 4599734 1801689..1802729 1 NC_008699.1 PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: fal:FRAAL0362 putative integral membrane protein; stage II sporulation E family protein 1802729 4599734 Noca_1695 Nocardioides sp. JS614 stage II sporulation E family protein YP_922895.1 1801689 D 196162 CDS YP_922896.1 119715931 4599735 complement(1802760..1803191) 1 NC_008699.1 PFAM: CBS domain containing protein; KEGG: mpa:MAP2219c hypothetical protein; hypothetical protein 1803191 4599735 Noca_1696 Nocardioides sp. JS614 hypothetical protein YP_922896.1 1802760 R 196162 CDS YP_922897.1 119715932 4599736 complement(1803313..1804188) 1 NC_008699.1 TIGRFAM: histidinol-phosphate phosphatase, putative; PFAM: inositol monophosphatase; KEGG: pac:PPA1271 putative inositol monophosphatase; histidinol-phosphate phosphatase 1804188 4599736 Noca_1697 Nocardioides sp. JS614 histidinol-phosphate phosphatase YP_922897.1 1803313 R 196162 CDS YP_922898.1 119715933 4599737 1804276..1804677 1 NC_008699.1 hypothetical protein 1804677 4599737 Noca_1698 Nocardioides sp. JS614 hypothetical protein YP_922898.1 1804276 D 196162 CDS YP_922899.1 119715934 4599738 complement(1804787..1805800) 1 NC_008699.1 PFAM: GTPase EngC; KEGG: sma:SAV3043 hypothetical protein; GTPase EngC 1805800 4599738 Noca_1699 Nocardioides sp. JS614 GTPase EngC YP_922899.1 1804787 R 196162 CDS YP_922900.1 119715935 4599739 complement(1805808..1807100) 1 NC_008699.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 1807100 4599739 Noca_1700 Nocardioides sp. JS614 3-phosphoshikimate 1-carboxyvinyltransferase YP_922900.1 1805808 R 196162 CDS YP_922901.1 119715936 4599740 complement(1807126..1807650) 1 NC_008699.1 PFAM: DoxX family protein; KEGG: sco:SCO7372 hypothetical protein; DoxX family protein 1807650 4599740 Noca_1701 Nocardioides sp. JS614 DoxX family protein YP_922901.1 1807126 R 196162 CDS YP_922902.1 119715937 4599741 complement(1807710..1809110) 1 NC_008699.1 PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: sco:SCO4117 hypothetical protein; sigma-70 region 2 domain-containing protein 1809110 4599741 Noca_1702 Nocardioides sp. JS614 sigma-70 region 2 domain-containing protein YP_922902.1 1807710 R 196162 CDS YP_922903.1 119715938 4599742 1809214..1809963 1 NC_008699.1 hypothetical protein 1809963 4599742 Noca_1703 Nocardioides sp. JS614 hypothetical protein YP_922903.1 1809214 D 196162 CDS YP_922904.1 119715939 4599743 1810181..1810942 1 NC_008699.1 PFAM: protein of unknown function DUF159; KEGG: rha:RHA1_ro08499 hypothetical protein; hypothetical protein 1810942 4599743 Noca_1704 Nocardioides sp. JS614 hypothetical protein YP_922904.1 1810181 D 196162 CDS YP_922905.1 119715940 4599744 1810939..1811601 1 NC_008699.1 KEGG: sma:SAV3039 hypothetical protein; hypothetical protein 1811601 4599744 Noca_1705 Nocardioides sp. JS614 hypothetical protein YP_922905.1 1810939 D 196162 CDS YP_922906.1 119715941 4599745 1811664..1812317 1 NC_008699.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sma:SAV3038 putative RNA polymerase ECF-subfamily sigma factor; sigma-70 region 2 domain-containing protein 1812317 4599745 Noca_1706 Nocardioides sp. JS614 sigma-70 region 2 domain-containing protein YP_922906.1 1811664 D 196162 CDS YP_922907.1 119715942 4599746 1812314..1812592 1 NC_008699.1 KEGG: tfu:Tfu_0549 anti-sigma factor; anti-sigma factor 1812592 4599746 Noca_1707 Nocardioides sp. JS614 anti-sigma factor YP_922907.1 1812314 D 196162 CDS YP_922908.1 119715943 4599747 complement(1812934..1813317) 1 NC_008699.1 KEGG: tfu:Tfu_0552 hypothetical protein; thioesterase superfamily protein 1813317 4599747 Noca_1708 Nocardioides sp. JS614 thioesterase superfamily protein YP_922908.1 1812934 R 196162 CDS YP_922909.1 119715944 4599748 complement(1813317..1813814) 1 NC_008699.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rha:RHA1_ro06470 possible acetyltransferase; N-acetyltransferase GCN5 1813814 4599748 Noca_1709 Nocardioides sp. JS614 N-acetyltransferase GCN5 YP_922909.1 1813317 R 196162 CDS YP_922910.1 119715945 4599749 complement(1813807..1815462) 1 NC_008699.1 PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: tfu:Tfu_0553 acetolactate synthase large subunit; hypothetical protein 1815462 4599749 Noca_1710 Nocardioides sp. JS614 hypothetical protein YP_922910.1 1813807 R 196162 CDS YP_922911.1 119715946 4598473 complement(1815473..1816324) 1 NC_008699.1 KEGG: bat:BAS2855 hypothetical protein; hypothetical protein 1816324 4598473 Noca_1711 Nocardioides sp. JS614 hypothetical protein YP_922911.1 1815473 R 196162 CDS YP_922912.1 119715947 4598474 1816392..1817867 1 NC_008699.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation/phosphoacceptor; PAS fold-4 domain protein; KEGG: sma:SAV3017 two-component system sensor kinase; histidine kinase, dimerisation/phosphoacceptor 1817867 4598474 Noca_1712 Nocardioides sp. JS614 histidine kinase, dimerisation/phosphoacceptor YP_922912.1 1816392 D 196162 CDS YP_922913.1 119715948 4598475 complement(1817934..1818185) 1 NC_008699.1 PFAM: transcription factor WhiB; KEGG: pac:PPA1264 probable transcription factor WhiB3; transcription factor WhiB 1818185 4598475 Noca_1713 Nocardioides sp. JS614 transcription factor WhiB YP_922913.1 1817934 R 196162 CDS YP_922914.1 119715949 4598476 1818412..1818810 1 NC_008699.1 KEGG: mpa:MAP3318c hypothetical protein; hypothetical protein 1818810 4598476 Noca_1714 Nocardioides sp. JS614 hypothetical protein YP_922914.1 1818412 D 196162 CDS YP_922915.1 119715950 4598477 complement(1818821..1819633) 1 NC_008699.1 PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: fal:FRAAL5992 SigH putative RNA polymerase sigma factor; sigma-70 region 2 domain-containing protein 1819633 4598477 Noca_1715 Nocardioides sp. JS614 sigma-70 region 2 domain-containing protein YP_922915.1 1818821 R 196162 CDS YP_922916.1 119715951 4598478 complement(1819635..1820066) 1 NC_008699.1 KEGG: fal:FRAAL5991 anti-sigma factor (partial match); anti-sigma factor 1820066 4598478 Noca_1716 Nocardioides sp. JS614 anti-sigma factor YP_922916.1 1819635 R 196162 CDS YP_922917.1 119715952 4598479 complement(1820615..1821361) 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: afu:AF1018 ABC transporter, ATP-binding protein; ABC transporter-like protein 1821361 4598479 Noca_1717 Nocardioides sp. JS614 ABC transporter-like protein YP_922917.1 1820615 R 196162 CDS YP_922918.1 119715953 4598480 complement(1821358..1824096) 1 NC_008699.1 PFAM: protein of unknown function DUF214; KEGG: tte:TTE2713 ABC-type transport systems, involved in lipoprotein release, permease components; hypothetical protein 1824096 4598480 Noca_1718 Nocardioides sp. JS614 hypothetical protein YP_922918.1 1821358 R 196162 CDS YP_922919.1 119715954 4598481 complement(1824493..1826388) 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dra:DR2404 ABC transporter, ATP-binding protein, MsbA family; ABC transporter-like protein 1826388 4598481 Noca_1719 Nocardioides sp. JS614 ABC transporter-like protein YP_922919.1 1824493 R 196162 CDS YP_922920.1 119715955 4598482 1827628..1828857 1 NC_008699.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: chy:CHY_2508 ISChy2, transposase; transposase IS116/IS110/IS902 family protein 1828857 4598482 Noca_1720 Nocardioides sp. JS614 transposase IS116/IS110/IS902 family protein YP_922920.1 1827628 D 196162 CDS YP_922921.1 119715956 4598483 1829796..1832396 1 NC_008699.1 KEGG: mmc:Mmcs_1430 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member-like protein; exonuclease V subunit alpha 1832396 4598483 Noca_1721 Nocardioides sp. JS614 exonuclease V subunit alpha YP_922921.1 1829796 D 196162 CDS YP_922922.1 119715957 4598484 complement(1832411..1833025) 1 NC_008699.1 PFAM: helix-turn-helix domain protein; KEGG: fra:Francci3_0807 transcriptional regulator, XRE family; helix-turn-helix domain-containing protein 1833025 4598484 Noca_1722 Nocardioides sp. JS614 helix-turn-helix domain-containing protein YP_922922.1 1832411 R 196162 CDS YP_922923.1 119715958 4598485 1833124..1833366 1 NC_008699.1 KEGG: mmc:Mmcs_4829 hypothetical protein; hypothetical protein 1833366 4598485 Noca_1723 Nocardioides sp. JS614 hypothetical protein YP_922923.1 1833124 D 196162 CDS YP_922924.1 119715959 4598486 1833425..1834561 1 NC_008699.1 PFAM: phage integrase family protein; KEGG: nfa:nfa7110 putative phage integrase; phage integrase family protein 1834561 4598486 Noca_1724 Nocardioides sp. JS614 phage integrase family protein YP_922924.1 1833425 D 196162 CDS YP_922925.1 119715960 4598487 complement(1834591..1834992) 1 NC_008699.1 KEGG: sco:SCO5254 superoxide dismutase; superoxide dismutase 1834992 4598487 Noca_1725 Nocardioides sp. JS614 superoxide dismutase YP_922925.1 1834591 R 196162 CDS YP_922926.1 119715961 4598488 1835080..1835421 1 NC_008699.1 PFAM: peptidase S24, S26A and S26B; KEGG: sma:SAV2987 signal peptidase protein; peptidase S24, S26A and S26B 1835421 4598488 Noca_1726 Nocardioides sp. JS614 peptidase S24, S26A and S26B YP_922926.1 1835080 D 196162 CDS YP_922927.1 119715962 4598489 1835522..1836712 1 NC_008699.1 PFAM: malic enzyme domain protein; malic enzyme, NAD-binding; KEGG: sma:SAV2981 putative malate dehydrogenase; malate dehydrogenase 1836712 4598489 Noca_1727 Nocardioides sp. JS614 malate dehydrogenase YP_922927.1 1835522 D 196162 CDS YP_922928.1 119715963 4598490 1836732..1837709 1 NC_008699.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: tfu:Tfu_1276 alcohol dehydrogenase; alcohol dehydrogenase 1837709 4598490 Noca_1728 Nocardioides sp. JS614 alcohol dehydrogenase YP_922928.1 1836732 D 196162 CDS YP_922929.1 119715964 4598491 1837706..1838389 1 NC_008699.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: sma:SAV2750 short chain dehydrogenase; short chain dehydrogenase 1838389 4598491 Noca_1729 Nocardioides sp. JS614 short chain dehydrogenase YP_922929.1 1837706 D 196162 CDS YP_922930.1 119715965 4598492 complement(1838364..1838969) 1 NC_008699.1 PFAM: regulatory protein, TetR; KEGG: mmc:Mmcs_1257 transcriptional regulator, TetR family; regulatory protein TetR 1838969 4598492 Noca_1730 Nocardioides sp. JS614 regulatory protein TetR YP_922930.1 1838364 R 196162 CDS YP_922931.1 119715966 4598493 1839098..1839334 1 NC_008699.1 KEGG: rha:RHA1_ro01407 hypothetical protein; hypothetical protein 1839334 4598493 Noca_1731 Nocardioides sp. JS614 hypothetical protein YP_922931.1 1839098 D 196162 CDS YP_922932.1 119715967 4598494 complement(1839464..1839751) 1 NC_008699.1 hypothetical protein 1839751 4598494 Noca_1732 Nocardioides sp. JS614 hypothetical protein YP_922932.1 1839464 R 196162 CDS YP_922933.1 119715968 4598495 complement(1839748..1840161) 1 NC_008699.1 hypothetical protein 1840161 4598495 Noca_1733 Nocardioides sp. JS614 hypothetical protein YP_922933.1 1839748 R 196162 CDS YP_922934.1 119715969 4598496 complement(1840166..1840822) 1 NC_008699.1 KEGG: fra:Francci3_2783 conserved hypothetical protein; hypothetical protein 1840822 4598496 Noca_1734 Nocardioides sp. JS614 hypothetical protein YP_922934.1 1840166 R 196162 CDS YP_922935.1 119715970 4598497 1840968..1841459 1 NC_008699.1 KEGG: bja:blr3900 probable arylsulfatase; arylsulfatase A-like protein 1841459 4598497 Noca_1735 Nocardioides sp. JS614 arylsulfatase A-like protein YP_922935.1 1840968 D 196162 CDS YP_922936.1 119715971 4598498 complement(1841548..1841724) 1 NC_008699.1 KEGG: tfu:Tfu_0565 hypothetical protein; hypothetical protein 1841724 4598498 Noca_1736 Nocardioides sp. JS614 hypothetical protein YP_922936.1 1841548 R 196162 CDS YP_922937.1 119715972 4598499 complement(1841727..1845518) 1 NC_008699.1 kgd; produces succinic semialdehyde; part of alternative pathway from alpha-ketoglutarate to succinate; essential for normal growth; alpha-ketoglutarate decarboxylase 1845518 kgd 4598499 kgd Nocardioides sp. JS614 alpha-ketoglutarate decarboxylase YP_922937.1 1841727 R 196162 CDS YP_922938.1 119715973 4598500 1845732..1846322 1 NC_008699.1 hypothetical protein 1846322 4598500 Noca_1738 Nocardioides sp. JS614 hypothetical protein YP_922938.1 1845732 D 196162 CDS YP_922939.1 119715974 4598501 1846322..1847230 1 NC_008699.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: mta:Moth_2366 cell envelope-related transcriptional attenuator; cell envelope-related transcriptional attenuator 1847230 4598501 Noca_1739 Nocardioides sp. JS614 cell envelope-related transcriptional attenuator YP_922939.1 1846322 D 196162 CDS YP_922940.1 119715975 4598502 complement(1847292..1848740) 1 NC_008699.1 hypothetical protein 1848740 4598502 Noca_1740 Nocardioides sp. JS614 hypothetical protein YP_922940.1 1847292 R 196162 CDS YP_922941.1 119715976 4598503 complement(1849136..1850380) 1 NC_008699.1 SMART: HNH nuclease; KEGG: fal:FRAAL3997 hypothetical protein; HNH nuclease 1850380 4598503 Noca_1741 Nocardioides sp. JS614 HNH nuclease YP_922941.1 1849136 R 196162 CDS YP_922942.1 119715977 4598505 1851047..1852615 1 NC_008699.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 1852615 argS 4598505 argS Nocardioides sp. JS614 arginyl-tRNA synthetase YP_922942.1 1851047 D 196162 CDS YP_922943.1 119715978 4598506 1852621..1854021 1 NC_008699.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: pac:PPA1259 diaminopimelate decarboxylase; diaminopimelate decarboxylase 1854021 4598506 Noca_1743 Nocardioides sp. JS614 diaminopimelate decarboxylase YP_922943.1 1852621 D 196162 CDS YP_922944.1 119715979 4598507 1854021..1855346 1 NC_008699.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 1855346 4598507 Noca_1744 Nocardioides sp. JS614 homoserine dehydrogenase YP_922944.1 1854021 D 196162 CDS YP_922945.1 119715980 4597927 1855343..1856440 1 NC_008699.1 TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: sco:SCO5355 threonine synthase; L-threonine synthase 1856440 4597927 Noca_1745 Nocardioides sp. JS614 L-threonine synthase YP_922945.1 1855343 D 196162 CDS YP_922946.1 119715981 4597928 1856450..1857352 1 NC_008699.1 KEGG: sco:SCO5356 homoserine kinase; TIGRFAM: homoserine kinase; PFAM: GHMP kinase; GHMP kinase, C terminal domain protein; homoserine kinase 1857352 4597928 Noca_1746 Nocardioides sp. JS614 homoserine kinase YP_922946.1 1856450 D 196162 CDS YP_922947.1 119715982 4597929 1857894..1859630 1 NC_008699.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 1859630 4597929 Noca_1747 Nocardioides sp. JS614 transcription termination factor Rho YP_922947.1 1857894 D 196162 CDS YP_922948.1 119715983 4597930 1859727..1860098 1 NC_008699.1 PFAM: response regulator receiver; KEGG: dsy:DSY2891 hypothetical protein; response regulator receiver 1860098 4597930 Noca_1748 Nocardioides sp. JS614 response regulator receiver YP_922948.1 1859727 D 196162 CDS YP_922949.1 119715984 4597931 1860168..1861976 1 NC_008699.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: mbu:Mbur_0510 external sensor signal transduction histidine kinase; ATPase domain-containing protein 1861976 4597931 Noca_1749 Nocardioides sp. JS614 ATPase domain-containing protein YP_922949.1 1860168 D 196162 CDS YP_922950.1 119715985 4597932 1862120..1862347 1 NC_008699.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 1862347 rpmE 4597932 rpmE Nocardioides sp. JS614 50S ribosomal protein L31 YP_922950.1 1862120 D 196162 CDS YP_922951.1 119715986 4597933 1862443..1863516 1 NC_008699.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 1863516 prfA 4597933 prfA Nocardioides sp. JS614 peptide chain release factor 1 YP_922951.1 1862443 D 196162 CDS YP_922952.1 119715987 4597934 1863524..1864402 1 NC_008699.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: sco:SCO5361 putative methylase; HemK family modification methylase 1864402 4597934 Noca_1752 Nocardioides sp. JS614 HemK family modification methylase YP_922952.1 1863524 D 196162 CDS YP_922953.1 119715988 4597935 1864422..1865081 1 NC_008699.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain; KEGG: sma:SAV2910 hypothetical protein; translation factor SUA5 1865081 4597935 Noca_1753 Nocardioides sp. JS614 translation factor SUA5 YP_922953.1 1864422 D 196162 CDS YP_922954.1 119715989 4597936 1865093..1866277 1 NC_008699.1 PFAM: glycosyl transferase, family 4; KEGG: pac:PPA1248 putative undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase; glycosyl transferase family protein 1866277 4597936 Noca_1754 Nocardioides sp. JS614 glycosyl transferase family protein YP_922954.1 1865093 D 196162 CDS YP_922955.1 119715990 4597937 1866472..1866945 1 NC_008699.1 KEGG: fal:FRAAL5940 putative ATP synthase protein I; putative ATP synthase protein I 1866945 4597937 Noca_1755 Nocardioides sp. JS614 putative ATP synthase protein I YP_922955.1 1866472 D 196162 CDS YP_922956.1 119715991 4597938 1866976..1867209 1 NC_008699.1 hypothetical protein 1867209 4597938 Noca_1756 Nocardioides sp. JS614 hypothetical protein YP_922956.1 1866976 D 196162 CDS YP_922957.1 119715992 4597939 1867220..1868050 1 NC_008699.1 TIGRFAM: ATP synthase F0, A subunit; PFAM: H+-transporting two-sector ATPase, A subunit; KEGG: pac:PPA1245 ATP synthase A chain; ATP synthase F0 subunit A 1868050 4597939 Noca_1757 Nocardioides sp. JS614 ATP synthase F0 subunit A YP_922957.1 1867220 D 196162 CDS YP_922958.1 119715993 4597940 1868131..1868340 1 NC_008699.1 PFAM: H+-transporting two-sector ATPase, C subunit; KEGG: pac:PPA1244 ATP synthase C chain; H+-transporting two-sector ATPase subunit C 1868340 4597940 Noca_1758 Nocardioides sp. JS614 H+-transporting two-sector ATPase subunit C YP_922958.1 1868131 D 196162 CDS YP_922959.1 119715994 4597941 1868380..1868949 1 NC_008699.1 TIGRFAM: ATP synthase F0, B subunit; PFAM: H+-transporting two-sector ATPase, B/B' subunit; KEGG: rha:RHA1_ro01476 H(+)-transporting two-sector ATPase subunit B; ATP synthase F0 subunit B 1868949 4597941 Noca_1759 Nocardioides sp. JS614 ATP synthase F0 subunit B YP_922959.1 1868380 D 196162 CDS YP_922960.1 119715995 4597942 1868949..1869776 1 NC_008699.1 TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+-transporting two-sector ATPase, delta (OSCP) subunit; KEGG: sco:SCO5370 ATP synthase delta chain; ATP synthase F1 subunit delta 1869776 4597942 Noca_1760 Nocardioides sp. JS614 ATP synthase F1 subunit delta YP_922960.1 1868949 D 196162 CDS YP_922961.1 119715996 4597943 1869831..1871474 1 NC_008699.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 1871474 4597943 Noca_1761 Nocardioides sp. JS614 F0F1 ATP synthase subunit alpha YP_922961.1 1869831 D 196162 CDS YP_922962.1 119715997 4597944 1871477..1872388 1 NC_008699.1 KEGG: lxx:Lxx07040 ATP synthase, gamma chain; TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+-transporting two-sector ATPase, gamma subunit; ATP synthase F1 subunit gamma 1872388 4597944 Noca_1762 Nocardioides sp. JS614 ATP synthase F1 subunit gamma YP_922962.1 1871477 D 196162 CDS YP_922963.1 119715998 4597945 1872393..1873847 1 NC_008699.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 1873847 4597945 Noca_1763 Nocardioides sp. JS614 F0F1 ATP synthase subunit beta YP_922963.1 1872393 D 196162 CDS YP_922964.1 119715999 4597676 1873849..1874250 1 NC_008699.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit epsilon 1874250 atpC 4597676 atpC Nocardioides sp. JS614 F0F1 ATP synthase subunit epsilon YP_922964.1 1873849 D 196162 CDS YP_922965.1 119716000 4597677 1874331..1874780 1 NC_008699.1 KEGG: sma:SAV2879 hypothetical protein; hypothetical protein 1874780 4597677 Noca_1765 Nocardioides sp. JS614 hypothetical protein YP_922965.1 1874331 D 196162 CDS YP_922966.1 119716001 4597678 complement(1874858..1876156) 1 NC_008699.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: mtc:MT3905 IS1557, transposase; transposase, IS204/IS1001/IS1096/IS1165 family protein 1876156 4597678 Noca_1766 Nocardioides sp. JS614 transposase, IS204/IS1001/IS1096/IS1165 family protein YP_922966.1 1874858 R 196162 CDS YP_922967.1 119716002 4597679 complement(1876368..1877822) 1 NC_008699.1 PFAM: FAD linked oxidase domain protein; KEGG: nfa:nfa45960 putative oxidoreductase; FAD linked oxidase domain-containing protein 1877822 4597679 Noca_1767 Nocardioides sp. JS614 FAD linked oxidase domain-containing protein YP_922967.1 1876368 R 196162 CDS YP_922968.1 119716003 4597680 1878028..1878639 1 NC_008699.1 KEGG: nfa:nfa33290 putative transcriptional regulator; putative transcriptional regulator 1878639 4597680 Noca_1768 Nocardioides sp. JS614 putative transcriptional regulator YP_922968.1 1878028 D 196162 CDS YP_922969.1 119716004 4597681 1878750..1879916 1 NC_008699.1 PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro04560 probable transporter, MFS superfamily; major facilitator transporter 1879916 4597681 Noca_1769 Nocardioides sp. JS614 major facilitator transporter YP_922969.1 1878750 D 196162 CDS YP_922970.1 119716005 4597682 complement(1879955..1880530) 1 NC_008699.1 TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: sco:SCO5381 hypothetical protein; ATP:cob(I)alamin adenosyltransferase 1880530 4597682 Noca_1770 Nocardioides sp. JS614 ATP:cob(I)alamin adenosyltransferase YP_922970.1 1879955 R 196162 CDS YP_922971.1 119716006 4597683 1880765..1881073 1 NC_008699.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: sco:SCO5386 anti-sigma factor antagonist; sulfate transporter/antisigma-factor antagonist STAS 1881073 4597683 Noca_1771 Nocardioides sp. JS614 sulfate transporter/antisigma-factor antagonist STAS YP_922971.1 1880765 D 196162 CDS YP_922972.1 119716007 4597684 1881141..1883183 1 NC_008699.1 KEGG: sma:SAV1912 putative methylmalonyl-CoA mutase, coenzyme B12-dependent alpha subunit; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein; methylmalonyl-CoA mutase 1883183 4597684 Noca_1772 Nocardioides sp. JS614 methylmalonyl-CoA mutase YP_922972.1 1881141 D 196162 CDS YP_922973.1 119716008 4597685 1883215..1883397 1 NC_008699.1 hypothetical protein 1883397 4597685 Noca_1773 Nocardioides sp. JS614 hypothetical protein YP_922973.1 1883215 D 196162 CDS YP_922974.1 119716009 4597686 1883445..1883969 1 NC_008699.1 PFAM: Ferritin, Dps family protein; KEGG: rha:RHA1_ro04028 probable ferritin; Ferritin, Dps family protein 1883969 4597686 Noca_1774 Nocardioides sp. JS614 Ferritin, Dps family protein YP_922974.1 1883445 D 196162 CDS YP_922975.1 119716010 4597687 1884093..1885151 1 NC_008699.1 hypothetical protein 1885151 4597687 Noca_1775 Nocardioides sp. JS614 hypothetical protein YP_922975.1 1884093 D 196162 CDS YP_922976.1 119716011 4597688 1885148..1886959 1 NC_008699.1 KEGG: sco:SCO4438 integral membrane protein; integral membrane protein 1886959 4597688 Noca_1776 Nocardioides sp. JS614 integral membrane protein YP_922976.1 1885148 D 196162 CDS YP_922977.1 119716012 4597689 complement(1886982..1887560) 1 NC_008699.1 hypothetical protein 1887560 4597689 Noca_1777 Nocardioides sp. JS614 hypothetical protein YP_922977.1 1886982 R 196162 CDS YP_922978.1 119716013 4597690 complement(1887550..1889430) 1 NC_008699.1 KEGG: lbl:LBL_1155 plastocyanin; hypothetical protein 1889430 4597690 Noca_1778 Nocardioides sp. JS614 hypothetical protein YP_922978.1 1887550 R 196162 CDS YP_922979.1 119716014 4597691 complement(1889512..1890579) 1 NC_008699.1 KEGG: bja:bll2443 hypothetical protein; hypothetical protein 1890579 4597691 Noca_1779 Nocardioides sp. JS614 hypothetical protein YP_922979.1 1889512 R 196162 CDS YP_922980.1 119716015 4597692 1890652..1891584 1 NC_008699.1 PFAM: FAD dependent oxidoreductase; KEGG: rxy:Rxyl_0526 D-amino acid oxidase; D-amino-acid oxidase 1891584 4597692 Noca_1780 Nocardioides sp. JS614 D-amino-acid oxidase YP_922980.1 1890652 D 196162 CDS YP_922981.1 119716016 4597694 complement(1892572..1893252) 1 NC_008699.1 PFAM: protein of unknown function DUF91; KEGG: nfa:nfa10710 hypothetical protein; hypothetical protein 1893252 4597694 Noca_1782 Nocardioides sp. JS614 hypothetical protein YP_922981.1 1892572 R 196162 CDS YP_922982.1 119716017 4597695 complement(1893313..1894860) 1 NC_008699.1 PFAM: chemotaxis sensory transducer; KEGG: ter:Tery_4229 methyl-accepting chemotaxis sensory transducer; chemotaxis sensory transducer 1894860 4597695 Noca_1783 Nocardioides sp. JS614 chemotaxis sensory transducer YP_922982.1 1893313 R 196162 CDS YP_922983.1 119716018 4597696 1895023..1896849 1 NC_008699.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: sco:SCO6475 oxidoreductase; 3-hydroxyacyl-CoA dehydrogenase 1896849 4597696 Noca_1784 Nocardioides sp. JS614 3-hydroxyacyl-CoA dehydrogenase YP_922983.1 1895023 D 196162 CDS YP_922984.1 119716019 4597697 1896989..1898470 1 NC_008699.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: sma:SAV5186 sugar transport protein; major facilitator transporter 1898470 4597697 Noca_1785 Nocardioides sp. JS614 major facilitator transporter YP_922984.1 1896989 D 196162 CDS YP_922985.1 119716020 4597698 1898528..1898767 1 NC_008699.1 hypothetical protein 1898767 4597698 Noca_1786 Nocardioides sp. JS614 hypothetical protein YP_922985.1 1898528 D 196162 CDS YP_922986.1 119716021 4597699 1898815..1899582 1 NC_008699.1 KEGG: tfu:Tfu_2558 hypothetical protein; hypothetical protein 1899582 4597699 Noca_1787 Nocardioides sp. JS614 hypothetical protein YP_922986.1 1898815 D 196162 CDS YP_922987.1 119716022 4597700 complement(1899776..1901683) 1 NC_008699.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: rxy:Rxyl_2930 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin 1901683 4597700 Noca_1788 Nocardioides sp. JS614 peptidase S8/S53 subtilisin kexin sedolisin YP_922987.1 1899776 R 196162 CDS YP_922988.1 119716023 4597701 1901785..1902531 1 NC_008699.1 KEGG: sco:SCO0537 secreted protein; secreted protein 1902531 4597701 Noca_1789 Nocardioides sp. JS614 secreted protein YP_922988.1 1901785 D 196162 CDS YP_922989.1 119716024 4597702 1902522..1903328 1 NC_008699.1 PFAM: alpha/beta hydrolase fold; KEGG: pac:PPA1101 putative esterase/lipase YbfF; alpha/beta hydrolase fold protein 1903328 4597702 Noca_1790 Nocardioides sp. JS614 alpha/beta hydrolase fold protein YP_922989.1 1902522 D 196162 CDS YP_922990.1 119716025 4597703 complement(1903376..1903918) 1 NC_008699.1 PFAM: protein of unknown function DUF1470; KEGG: mmc:Mmcs_1119 protein of unknown function DUF1470; hypothetical protein 1903918 4597703 Noca_1791 Nocardioides sp. JS614 hypothetical protein YP_922990.1 1903376 R 196162 CDS YP_922991.1 119716026 4597704 1903997..1904941 1 NC_008699.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: mmc:Mmcs_1118 protein of unknown function DUF6, transmembrane; hypothetical protein 1904941 4597704 Noca_1792 Nocardioides sp. JS614 hypothetical protein YP_922991.1 1903997 D 196162 CDS YP_922992.1 119716027 4597705 complement(1905078..1906241) 1 NC_008699.1 PFAM: protein of unknown function UPF0118; KEGG: rha:RHA1_ro00086 hypothetical protein; hypothetical protein 1906241 4597705 Noca_1793 Nocardioides sp. JS614 hypothetical protein YP_922992.1 1905078 R 196162 CDS YP_922993.1 119716028 4597706 complement(1906238..1907578) 1 NC_008699.1 KEGG: tfu:Tfu_2396 putative cellulose-binding protein; hypothetical protein 1907578 4597706 Noca_1794 Nocardioides sp. JS614 hypothetical protein YP_922993.1 1906238 R 196162 CDS YP_922994.1 119716029 4597707 complement(1907738..1909090) 1 NC_008699.1 TIGRFAM: crotonyl-CoA reductase; PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sma:SAV1911 crotonyl-CoA reductase; crotonyl-CoA reductase 1909090 4597707 Noca_1795 Nocardioides sp. JS614 crotonyl-CoA reductase YP_922994.1 1907738 R 196162 CDS YP_922995.1 119716030 4597708 complement(1909229..1909741) 1 NC_008699.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rha:RHA1_ro01456 possible methylmalonyl-CoA epimerase; methylmalonyl-CoA epimerase 1909741 4597708 Noca_1796 Nocardioides sp. JS614 methylmalonyl-CoA epimerase YP_922995.1 1909229 R 196162 CDS YP_922996.1 119716031 4597709 1909823..1911013 1 NC_008699.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis; acetyl-CoA acetyltransferase 1911013 4597709 Noca_1797 Nocardioides sp. JS614 acetyl-CoA acetyltransferase YP_922996.1 1909823 D 196162 CDS YP_922997.1 119716032 4597710 1910997..1911968 1 NC_008699.1 TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; KEGG: sma:SAV2855 lysine arginine ornithine transport system kinase; LAO/AO transport system ATPase 1911968 4597710 Noca_1798 Nocardioides sp. JS614 LAO/AO transport system ATPase YP_922997.1 1910997 D 196162 CDS YP_922998.1 119716033 4597711 1912030..1912275 1 NC_008699.1 hypothetical protein 1912275 4597711 Noca_1799 Nocardioides sp. JS614 hypothetical protein YP_922998.1 1912030 D 196162 CDS YP_922999.1 119716034 4597712 1912281..1912793 1 NC_008699.1 KEGG: fal:FRAAL2022 hypothetical protein; hypothetical protein 1912793 4597712 Noca_1800 Nocardioides sp. JS614 hypothetical protein YP_922999.1 1912281 D 196162 CDS YP_923000.1 119716035 4597638 1912864..1913352 1 NC_008699.1 PFAM: regulatory protein, MarR; KEGG: tfu:Tfu_2393 regulatory protein, MarR; regulatory protein MarR 1913352 4597638 Noca_1801 Nocardioides sp. JS614 regulatory protein MarR YP_923000.1 1912864 D 196162 CDS YP_923001.1 119716036 4597639 1913529..1915217 1 NC_008699.1 KEGG: sma:SAV2832 putative isobutyryl-CoA mutase, chain A; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; methylmalonyl-CoA mutase 1915217 4597639 Noca_1802 Nocardioides sp. JS614 methylmalonyl-CoA mutase YP_923001.1 1913529 D 196162 CDS YP_923002.1 119716037 4597640 1915308..1916516 1 NC_008699.1 PFAM: acetyl-CoA hydrolase/transferase; KEGG: fra:Francci3_1561 4-hydroxybutyrate coenzyme A transferase; acetyl-CoA hydrolase/transferase 1916516 4597640 Noca_1803 Nocardioides sp. JS614 acetyl-CoA hydrolase/transferase YP_923002.1 1915308 D 196162 CDS YP_923003.1 119716038 4597641 1916585..1917529 1 NC_008699.1 PFAM: Thioredoxin domain; KEGG: sma:SAV2830 putative thioredoxin; thioredoxin domain-containing protein 1917529 4597641 Noca_1804 Nocardioides sp. JS614 thioredoxin domain-containing protein YP_923003.1 1916585 D 196162 CDS YP_923004.1 119716039 4597642 complement(1917728..1918489) 1 NC_008699.1 PFAM: NUDIX hydrolase; KEGG: pac:PPA1110 putative pyrophosphohydrolase; NUDIX hydrolase 1918489 4597642 Noca_1805 Nocardioides sp. JS614 NUDIX hydrolase YP_923004.1 1917728 R 196162 CDS YP_923005.1 119716040 4597643 complement(1918499..1920748) 1 NC_008699.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein 1920748 4597643 Noca_1806 Nocardioides sp. JS614 glycogen branching protein YP_923005.1 1918499 R 196162 CDS YP_923006.1 119716041 4597644 complement(1920745..1922211) 1 NC_008699.1 KEGG: rha:RHA1_ro06042 hypothetical protein; hypothetical protein 1922211 4597644 Noca_1807 Nocardioides sp. JS614 hypothetical protein YP_923006.1 1920745 R 196162 CDS YP_923007.1 119716042 4597645 complement(1922208..1923923) 1 NC_008699.1 KEGG: sma:SAV2803 trehalose synthase; TIGRFAM: trehalose synthase; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; trehalose synthase 1923923 4597645 Noca_1808 Nocardioides sp. JS614 trehalose synthase YP_923007.1 1922208 R 196162 CDS YP_923008.1 119716043 4597646 complement(1923920..1925932) 1 NC_008699.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: fra:Francci3_3678 alpha amylase, catalytic region; alpha amylase 1925932 4597646 Noca_1809 Nocardioides sp. JS614 alpha amylase YP_923008.1 1923920 R 196162 CDS YP_923009.1 119716044 4597647 complement(1926139..1929579) 1 NC_008699.1 PFAM: peptidase M36, fungalysin; KEGG: rxy:Rxyl_2538 coagulation factor 5/8 type-like protein; peptidase M36, fungalysin 1929579 4597647 Noca_1810 Nocardioides sp. JS614 peptidase M36, fungalysin YP_923009.1 1926139 R 196162 CDS YP_923010.1 119716045 4597648 1929708..1932296 1 NC_008699.1 KEGG: sma:SAV2800 putative glycogen phosphorylase; TIGRFAM: alpha-glucan phosphorylases; PFAM: glycosyl transferase, family 35; alpha-glucan phosphorylase 1932296 4597648 Noca_1811 Nocardioides sp. JS614 alpha-glucan phosphorylase YP_923010.1 1929708 D 196162 CDS YP_923011.1 119716046 4597649 complement(1932461..1934617) 1 NC_008699.1 KEGG: sma:SAV2789 putative glycosyl hydrolase; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; glycogen debranching protein GlgX 1934617 4597649 Noca_1812 Nocardioides sp. JS614 glycogen debranching protein GlgX YP_923011.1 1932461 R 196162 CDS YP_923012.1 119716047 4597650 1934626..1935492 1 NC_008699.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: sma:SAV2786 enoyl-CoA hydratase; short chain enoyl-CoA hydratase 1935492 4597650 Noca_1813 Nocardioides sp. JS614 short chain enoyl-CoA hydratase YP_923012.1 1934626 D 196162 CDS YP_923013.1 119716048 4597651 1935500..1935832 1 NC_008699.1 hypothetical protein 1935832 4597651 Noca_1814 Nocardioides sp. JS614 hypothetical protein YP_923013.1 1935500 D 196162 CDS YP_923014.1 119716049 4597652 1935981..1936781 1 NC_008699.1 PFAM: electron transfer flavoprotein beta-subunit; KEGG: sco:SCO1082 putative electron transfer flavoprotein, beta subunit; electron transfer flavoprotein subunit beta 1936781 4597652 Noca_1815 Nocardioides sp. JS614 electron transfer flavoprotein subunit beta YP_923014.1 1935981 D 196162 CDS YP_923015.1 119716050 4597653 1936809..1937762 1 NC_008699.1 PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: sco:SCO1081 putative electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha 1937762 4597653 Noca_1816 Nocardioides sp. JS614 electron transfer flavoprotein subunit alpha YP_923015.1 1936809 D 196162 CDS YP_923016.1 119716051 4597654 complement(1937859..1939352) 1 NC_008699.1 KEGG: sma:SAV4459 hypothetical protein; hypothetical protein 1939352 4597654 Noca_1817 Nocardioides sp. JS614 hypothetical protein YP_923016.1 1937859 R 196162 CDS YP_923017.1 119716052 4597655 1939486..1940775 1 NC_008699.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 1940775 proA 4597655 proA Nocardioides sp. JS614 gamma-glutamyl phosphate reductase YP_923017.1 1939486 D 196162 CDS YP_923018.1 119716053 4597656 1940812..1940964 1 NC_008699.1 hypothetical protein 1940964 4597656 Noca_1819 Nocardioides sp. JS614 hypothetical protein YP_923018.1 1940812 D 196162 CDS YP_923019.1 119716054 4597657 1941003..1941620 1 NC_008699.1 KEGG: cef:CE2257 putative nicotinate mononucleotide adenylyltransferase; TIGRFAM: cytidyltransferase-related domain; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; nicotinate-nucleotide adenylyltransferase 1941620 4597657 Noca_1820 Nocardioides sp. JS614 nicotinate-nucleotide adenylyltransferase YP_923019.1 1941003 D 196162 CDS YP_923020.1 119716055 4597658 1941617..1942000 1 NC_008699.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: sma:SAV5480 hypothetical protein; iojap family protein 1942000 4597658 Noca_1821 Nocardioides sp. JS614 iojap family protein YP_923020.1 1941617 D 196162 CDS YP_923021.1 119716056 4597659 1941997..1942629 1 NC_008699.1 PFAM: Phosphoglycerate mutase; KEGG: tfu:Tfu_2169 putative phosphoglycerate mutase; phosphoglycerate mutase 1942629 4597659 Noca_1822 Nocardioides sp. JS614 phosphoglycerate mutase YP_923021.1 1941997 D 196162 CDS YP_923022.1 119716057 4597661 1942853..1943476 1 NC_008699.1 KEGG: fal:FRAAL1760 integrase; hypothetical protein 1943476 4597661 Noca_1823 Nocardioides sp. JS614 hypothetical protein YP_923022.1 1942853 D 196162 CDS YP_923023.1 119716058 4597662 complement(1943537..1944712) 1 NC_008699.1 PFAM: type IV pilus assembly PilZ; type IV pilus assembly PilZ 1944712 4597662 Noca_1824 Nocardioides sp. JS614 type IV pilus assembly PilZ YP_923023.1 1943537 R 196162 CDS YP_923024.1 119716059 4597663 complement(1945445..1946479) 1 NC_008699.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: mmc:Mmcs_1694 transcriptional regulator, AraC family; AraC family transcriptional regulator 1946479 4597663 Noca_1825 Nocardioides sp. JS614 AraC family transcriptional regulator YP_923024.1 1945445 R 196162 CDS YP_923025.1 119716060 4597664 complement(1947061..1947762) 1 NC_008699.1 PFAM: plasmid pRiA4b ORF-3 family protein; KEGG: cef:CE1215 hypothetical protein; plasmid pRiA4b ORF-3 family protein 1947762 4597664 Noca_1826 Nocardioides sp. JS614 plasmid pRiA4b ORF-3 family protein YP_923025.1 1947061 R 196162 CDS YP_923026.1 119716061 4597665 complement(1948073..1948663) 1 NC_008699.1 PFAM: regulatory protein, TetR; KEGG: nfa:nfa34140 putative transcriptional regulator; regulatory protein TetR 1948663 4597665 Noca_1827 Nocardioides sp. JS614 regulatory protein TetR YP_923026.1 1948073 R 196162 CDS YP_923027.1 119716062 4597666 1948796..1950016 1 NC_008699.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 1950016 4597666 Noca_1828 Nocardioides sp. JS614 acetyl-CoA acetyltransferase YP_923027.1 1948796 D 196162 CDS YP_923028.1 119716063 4597667 1950013..1950810 1 NC_008699.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sco:SCO1692 oxidoreductase; short-chain dehydrogenase/reductase SDR 1950810 4597667 Noca_1829 Nocardioides sp. JS614 short-chain dehydrogenase/reductase SDR YP_923028.1 1950013 D 196162 CDS YP_923029.1 119716064 4597669 1951957..1953312 1 NC_008699.1 PFAM: aminoglycoside phosphotransferase; KEGG: nfa:nfa34090 putative phosphotransferase; aminoglycoside phosphotransferase 1953312 4597669 Noca_1831 Nocardioides sp. JS614 aminoglycoside phosphotransferase YP_923029.1 1951957 D 196162 CDS YP_923030.1 119716065 4597670 1953312..1954547 1 NC_008699.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: nfa:nfa34080 putative acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 1954547 4597670 Noca_1832 Nocardioides sp. JS614 acyl-CoA dehydrogenase domain-containing protein YP_923030.1 1953312 D 196162 CDS YP_923031.1 119716066 4597671 1954640..1955350 1 NC_008699.1 PFAM: regulatory protein, TetR; KEGG: sma:SAV6602 TetR-family transcriptional regulator; regulatory protein TetR 1955350 4597671 Noca_1833 Nocardioides sp. JS614 regulatory protein TetR YP_923031.1 1954640 D 196162 CDS YP_923032.1 119716067 4597672 complement(1955309..1956082) 1 NC_008699.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro01497 3-oxoacyl-[acyl-carrier-protein] reductase; short-chain dehydrogenase/reductase SDR 1956082 4597672 Noca_1834 Nocardioides sp. JS614 short-chain dehydrogenase/reductase SDR YP_923032.1 1955309 R 196162 CDS YP_923033.1 119716068 4597673 complement(1956101..1959640) 1 NC_008699.1 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; indolepyruvate ferredoxin oxidoreductase 1959640 4597673 Noca_1835 Nocardioides sp. JS614 indolepyruvate ferredoxin oxidoreductase YP_923033.1 1956101 R 196162 CDS YP_923034.1 119716069 4597674 1959797..1960951 1 NC_008699.1 KEGG: rha:RHA1_ro03580 hypothetical protein; CdaR family transcriptional regulator 1960951 4597674 Noca_1836 Nocardioides sp. JS614 CdaR family transcriptional regulator YP_923034.1 1959797 D 196162 CDS YP_923035.1 119716070 4597675 1961071..1962216 1 NC_008699.1 PFAM: FAD dependent oxidoreductase; KEGG: pfo:Pfl_0969 FAD dependent oxidoreductase; FAD dependent oxidoreductase 1962216 4597675 Noca_1837 Nocardioides sp. JS614 FAD dependent oxidoreductase YP_923035.1 1961071 D 196162 CDS YP_923036.1 119716071 4597158 1962226..1963098 1 NC_008699.1 PFAM: inner-membrane translocator; KEGG: dar:Daro_0271 inner-membrane translocator; inner-membrane translocator 1963098 4597158 Noca_1838 Nocardioides sp. JS614 inner-membrane translocator YP_923036.1 1962226 D 196162 CDS YP_923037.1 119716072 4597159 1963098..1964150 1 NC_008699.1 PFAM: inner-membrane translocator; KEGG: dvu:DVU0549 high-affinity branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator 1964150 4597159 Noca_1839 Nocardioides sp. JS614 inner-membrane translocator YP_923037.1 1963098 D 196162 CDS YP_923038.1 119716073 4597160 1964147..1964935 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: wsu:WS1467 ABC transport system ATP-binding protein; ABC transporter-like protein 1964935 4597160 Noca_1840 Nocardioides sp. JS614 ABC transporter-like protein YP_923038.1 1964147 D 196162 CDS YP_923039.1 119716074 4597161 1964928..1965719 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO2012 putative branched chain amino acid transport ATP-binding protein; ABC transporter-like protein 1965719 4597161 Noca_1841 Nocardioides sp. JS614 ABC transporter-like protein YP_923039.1 1964928 D 196162 CDS YP_923040.1 119716075 4597162 1965841..1967025 1 NC_008699.1 PFAM: Extracellular ligand-binding receptor; KEGG: gsu:GSU3401 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative; extracellular ligand-binding receptor 1967025 4597162 Noca_1842 Nocardioides sp. JS614 extracellular ligand-binding receptor YP_923040.1 1965841 D 196162 CDS YP_923041.1 119716076 4597163 1967130..1968479 1 NC_008699.1 PFAM: MmgE/PrpD family protein; KEGG: sil:SPO0205 MmgE/PrpD family protein; MmgE/PrpD family protein 1968479 4597163 Noca_1843 Nocardioides sp. JS614 MmgE/PrpD family protein YP_923041.1 1967130 D 196162 CDS YP_923042.1 119716077 4597164 1968476..1970491 1 NC_008699.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rha:RHA1_ro06076 2,4-dienoyl-CoA reductase; NADH:flavin oxidoreductase 1970491 4597164 Noca_1844 Nocardioides sp. JS614 NADH:flavin oxidoreductase YP_923042.1 1968476 D 196162 CDS YP_923043.1 119716078 4597165 1970515..1970862 1 NC_008699.1 PFAM: Endoribonuclease L-PSP; KEGG: pfu:PF0668 hypothetical protein; endoribonuclease L-PSP 1970862 4597165 Noca_1845 Nocardioides sp. JS614 endoribonuclease L-PSP YP_923043.1 1970515 D 196162 CDS YP_923044.1 119716079 4597166 1970859..1971584 1 NC_008699.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: dsy:DSY2660 hypothetical protein; short-chain dehydrogenase/reductase SDR 1971584 4597166 Noca_1846 Nocardioides sp. JS614 short-chain dehydrogenase/reductase SDR YP_923044.1 1970859 D 196162 CDS YP_923045.1 119716080 4597167 1971581..1972309 1 NC_008699.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: dsy:DSY2660 hypothetical protein; short-chain dehydrogenase/reductase SDR 1972309 4597167 Noca_1847 Nocardioides sp. JS614 short-chain dehydrogenase/reductase SDR YP_923045.1 1971581 D 196162 CDS YP_923046.1 119716081 4597168 1972353..1973489 1 NC_008699.1 PFAM: FAD dependent oxidoreductase; KEGG: rha:RHA1_ro00338 probable sarcosine oxidase beta subunit; FAD dependent oxidoreductase 1973489 4597168 Noca_1848 Nocardioides sp. JS614 FAD dependent oxidoreductase YP_923046.1 1972353 D 196162 CDS YP_923047.1 119716082 4597169 1973486..1974187 1 NC_008699.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bam:Bamb_4144 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1974187 4597169 Noca_1849 Nocardioides sp. JS614 short-chain dehydrogenase/reductase SDR YP_923047.1 1973486 D 196162 CDS YP_923048.1 119716083 4597170 1974216..1974569 1 NC_008699.1 PFAM: protein of unknown function DUF861, cupin_3; KEGG: fnu:FN0090 ethanolamine utilization protein EutQ; hypothetical protein 1974569 4597170 Noca_1850 Nocardioides sp. JS614 hypothetical protein YP_923048.1 1974216 D 196162 CDS YP_923049.1 119716084 4597171 1974566..1976164 1 NC_008699.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bxe:Bxe_C0508 putative dehydrogenase flavoprotein; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 1976164 4597171 Noca_1851 Nocardioides sp. JS614 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_923049.1 1974566 D 196162 CDS YP_923050.1 119716085 4597172 1976161..1976997 1 NC_008699.1 PFAM: NmrA family protein; KEGG: nfa:nfa29880 hypothetical protein; NmrA family protein 1976997 4597172 Noca_1852 Nocardioides sp. JS614 NmrA family protein YP_923050.1 1976161 D 196162 CDS YP_923051.1 119716086 4597173 1976994..1978820 1 NC_008699.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rfr:Rfer_2384 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 1978820 4597173 Noca_1853 Nocardioides sp. JS614 acyl-CoA dehydrogenase domain-containing protein YP_923051.1 1976994 D 196162 CDS YP_923052.1 119716087 4597174 1978853..1979740 1 NC_008699.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: mmc:Mmcs_1118 protein of unknown function DUF6, transmembrane; hypothetical protein 1979740 4597174 Noca_1854 Nocardioides sp. JS614 hypothetical protein YP_923052.1 1978853 D 196162 CDS YP_923053.1 119716088 4597175 1979832..1980815 1 NC_008699.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: rha:RHA1_ro02687 possible 2-nitropropane dioxygenase; 2-nitropropane dioxygenase 1980815 4597175 Noca_1855 Nocardioides sp. JS614 2-nitropropane dioxygenase YP_923053.1 1979832 D 196162 CDS YP_923054.1 119716089 4597176 1980883..1981749 1 NC_008699.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 1981749 4597176 Noca_1856 Nocardioides sp. JS614 enoyl-CoA hydratase YP_923054.1 1980883 D 196162 CDS YP_923055.1 119716090 4597177 1981981..1982718 1 NC_008699.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro02735 probable 3-oxoacyl-[acyl-carrier-protein] reductase; short-chain dehydrogenase/reductase SDR 1982718 4597177 Noca_1857 Nocardioides sp. JS614 short-chain dehydrogenase/reductase SDR YP_923055.1 1981981 D 196162 CDS YP_923056.1 119716091 4597178 1982715..1983629 1 NC_008699.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: bcn:Bcen_4953 protein of unknown function DUF6, transmembrane; hypothetical protein 1983629 4597178 Noca_1858 Nocardioides sp. JS614 hypothetical protein YP_923056.1 1982715 D 196162 CDS YP_923057.1 119716092 4597180 1985025..1985369 1 NC_008699.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: fal:FRAAL4180 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 1985369 4597180 Noca_1860 Nocardioides sp. JS614 glyoxalase/bleomycin resistance protein/dioxygenase YP_923057.1 1985025 D 196162 CDS YP_923058.1 119716093 4597181 complement(1985386..1985907) 1 NC_008699.1 hypothetical protein 1985907 4597181 Noca_1861 Nocardioides sp. JS614 hypothetical protein YP_923058.1 1985386 R 196162 CDS YP_923059.1 119716094 4597182 complement(1986022..1987971) 1 NC_008699.1 KEGG: sma:SAV4769 amino acid transporter; amino acid transporter 1987971 4597182 Noca_1862 Nocardioides sp. JS614 amino acid transporter YP_923059.1 1986022 R 196162 CDS YP_923060.1 119716095 4597183 1988090..1988458 1 NC_008699.1 hypothetical protein 1988458 4597183 Noca_1863 Nocardioides sp. JS614 hypothetical protein YP_923060.1 1988090 D 196162 CDS YP_923061.1 119716096 4597184 1988488..1989603 1 NC_008699.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: fal:FRAAL5304 sensory histidine kinase in two-component regulatory system wtih KdpE, regulation of potassium translocation; ATPase domain-containing protein 1989603 4597184 Noca_1864 Nocardioides sp. JS614 ATPase domain-containing protein YP_923061.1 1988488 D 196162 CDS YP_923062.1 119716097 4597185 1989600..1990274 1 NC_008699.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sco:SCO5872 putative turgor pressure regulator; response regulator receiver 1990274 4597185 Noca_1865 Nocardioides sp. JS614 response regulator receiver YP_923062.1 1989600 D 196162 CDS YP_923063.1 119716098 4597186 complement(1990292..1991209) 1 NC_008699.1 KEGG: rha:RHA1_ro04434 hypothetical protein; hypothetical protein 1991209 4597186 Noca_1866 Nocardioides sp. JS614 hypothetical protein YP_923063.1 1990292 R 196162 CDS YP_923064.1 119716099 4597187 complement(1991291..1993141) 1 NC_008699.1 PFAM: DSBA oxidoreductase; Na+/H+ antiporter NhaA; KEGG: rha:RHA1_ro01708 Na+/H+ antiporter, NhaA family; Na+/H+ antiporter NhaA 1993141 4597187 Noca_1867 Nocardioides sp. JS614 Na+/H+ antiporter NhaA YP_923064.1 1991291 R 196162 CDS YP_923065.1 119716100 4597188 complement(1993155..1993493) 1 NC_008699.1 KEGG: nfa:nfa55090 hypothetical protein; hypothetical protein 1993493 4597188 Noca_1868 Nocardioides sp. JS614 hypothetical protein YP_923065.1 1993155 R 196162 CDS YP_923066.1 119716101 4597189 complement(1993589..1994158) 1 NC_008699.1 PFAM: YceI family protein; KEGG: fal:FRAAL1996 hypothetical protein; hypothetical protein 1994158 4597189 Noca_1869 Nocardioides sp. JS614 hypothetical protein YP_923066.1 1993589 R 196162 CDS YP_923067.1 119716102 4597190 1994263..1994739 1 NC_008699.1 PFAM: regulatory protein, MarR; KEGG: fal:FRAAL1706 putative MarR-family transcriptional regulator; regulatory protein MarR 1994739 4597190 Noca_1870 Nocardioides sp. JS614 regulatory protein MarR YP_923067.1 1994263 D 196162 CDS YP_923068.1 119716103 4597191 1994792..1995931 1 NC_008699.1 PFAM: cytochrome P450; KEGG: eba:ebA6767 hypothetical heme-thiolate monooxygenase; cytochrome P450 1995931 4597191 Noca_1871 Nocardioides sp. JS614 cytochrome P450 YP_923068.1 1994792 D 196162 CDS YP_923069.1 119716104 4597192 complement(1995955..1996215) 1 NC_008699.1 KEGG: nfa:nfa24740 hypothetical protein; hypothetical protein 1996215 4597192 Noca_1872 Nocardioides sp. JS614 hypothetical protein YP_923069.1 1995955 R 196162 CDS YP_923070.1 119716105 4597193 1996326..1997873 1 NC_008699.1 KEGG: ecj:JW4343 conserved hypothetical protein; hypothetical protein 1997873 4597193 Noca_1873 Nocardioides sp. JS614 hypothetical protein YP_923070.1 1996326 D 196162 CDS YP_923071.1 119716106 4597194 1997845..1998570 1 NC_008699.1 PFAM: Radical SAM domain protein; KEGG: ecp:ECP_4763 hypothetical protein YjjW; radical SAM domain-containing protein 1998570 4597194 Noca_1874 Nocardioides sp. JS614 radical SAM domain-containing protein YP_923071.1 1997845 D 196162 CDS YP_923072.1 119716107 4597195 complement(1998593..1999285) 1 NC_008699.1 hypothetical protein 1999285 4597195 Noca_1875 Nocardioides sp. JS614 hypothetical protein YP_923072.1 1998593 R 196162 CDS YP_923073.1 119716108 4597196 complement(1999282..2000511) 1 NC_008699.1 KEGG: sus:Acid_6922 natural resistance-associated macrophage protein; natural resistance-associated macrophage protein 2000511 4597196 Noca_1876 Nocardioides sp. JS614 natural resistance-associated macrophage protein YP_923073.1 1999282 R 196162 CDS YP_923074.1 119716109 4597197 complement(2000508..2000960) 1 NC_008699.1 hypothetical protein 2000960 4597197 Noca_1877 Nocardioides sp. JS614 hypothetical protein YP_923074.1 2000508 R 196162 CDS YP_923075.1 119716110 4596379 complement(2000990..2001916) 1 NC_008699.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: eli:ELI_09720 esterase; alpha/beta hydrolase domain-containing protein 2001916 4596379 Noca_1878 Nocardioides sp. JS614 alpha/beta hydrolase domain-containing protein YP_923075.1 2000990 R 196162 CDS YP_923076.1 119716111 4596380 2001990..2002355 1 NC_008699.1 KEGG: rha:RHA1_ro02551 hypothetical protein; hypothetical protein 2002355 4596380 Noca_1879 Nocardioides sp. JS614 hypothetical protein YP_923076.1 2001990 D 196162 CDS YP_923077.1 119716112 4596381 2002630..2003322 1 NC_008699.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: fal:FRAAL1709 putative phosphoglycolate phosphatase; HAD family hydrolase 2003322 4596381 Noca_1880 Nocardioides sp. JS614 HAD family hydrolase YP_923077.1 2002630 D 196162 CDS YP_923078.1 119716113 4596382 complement(2003395..2003709) 1 NC_008699.1 hypothetical protein 2003709 4596382 Noca_1881 Nocardioides sp. JS614 hypothetical protein YP_923078.1 2003395 R 196162 CDS YP_923079.1 119716114 4596383 complement(2003855..2005318) 1 NC_008699.1 PFAM: FAD dependent oxidoreductase; KEGG: nfa:nfa43490 putative monooxygenase; FAD dependent oxidoreductase 2005318 4596383 Noca_1882 Nocardioides sp. JS614 FAD dependent oxidoreductase YP_923079.1 2003855 R 196162 CDS YP_923080.1 119716115 4596384 2005416..2007524 1 NC_008699.1 PFAM: protein of unknown function DUF839; KEGG: sco:SCO3790 hypothetical protein; hypothetical protein 2007524 4596384 Noca_1883 Nocardioides sp. JS614 hypothetical protein YP_923080.1 2005416 D 196162 CDS YP_923081.1 119716116 4596385 2007767..2010313 1 NC_008699.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 2010313 leuS 4596385 leuS Nocardioides sp. JS614 leucyl-tRNA synthetase YP_923081.1 2007767 D 196162 CDS YP_923082.1 119716117 4596386 2010336..2011190 1 NC_008699.1 TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: sma:SAV5490 hypothetical protein; degV family protein 2011190 4596386 Noca_1885 Nocardioides sp. JS614 degV family protein YP_923082.1 2010336 D 196162 CDS YP_923083.1 119716118 4596387 2011314..2012216 1 NC_008699.1 TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; SMART: Helix-hairpin-helix DNA-binding, class 1; KEGG: nfa:nfa13820 putative DNA-binding protein; helix-hairpin-helix repeat-containing competence protein ComEA 2012216 4596387 Noca_1886 Nocardioides sp. JS614 helix-hairpin-helix repeat-containing competence protein ComEA YP_923083.1 2011314 D 196162 CDS YP_923084.1 119716119 4596388 2012221..2014539 1 NC_008699.1 TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: sco:SCO2567 integral membrane protein; DNA internalization-related competence protein ComEC/Rec2 2014539 4596388 Noca_1887 Nocardioides sp. JS614 DNA internalization-related competence protein ComEC/Rec2 YP_923084.1 2012221 D 196162 CDS YP_923085.1 119716120 4596389 2014552..2015544 1 NC_008699.1 TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; KEGG: sco:SCO2564 putative DNA polymerase III, delta subunit; DNA polymerase III subunit delta 2015544 4596389 Noca_1888 Nocardioides sp. JS614 DNA polymerase III subunit delta YP_923085.1 2014552 D 196162 CDS YP_923086.1 119716121 4596390 complement(2015820..2016080) 1 NC_008699.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 2016080 rpsT 4596390 rpsT Nocardioides sp. JS614 30S ribosomal protein S20 YP_923086.1 2015820 R 196162 CDS YP_923087.1 119716122 4596391 complement(2016196..2017152) 1 NC_008699.1 KEGG: pac:PPA0191 hypothetical protein; hypothetical protein 2017152 4596391 Noca_1890 Nocardioides sp. JS614 hypothetical protein YP_923087.1 2016196 R 196162 CDS YP_923088.1 119716123 4596392 2017233..2019140 1 NC_008699.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 2019140 4596392 Noca_1891 Nocardioides sp. JS614 GTP-binding protein LepA YP_923088.1 2017233 D 196162 CDS YP_923089.1 119716124 4596393 2019140..2020051 1 NC_008699.1 PFAM: aminoglycoside/hydroxyurea antibiotic resistance kinase; KEGG: sma:SAV3961 hydroxyurea phosphotransferase; aminoglycoside/hydroxyurea antibiotic resistance kinase 2020051 4596393 Noca_1892 Nocardioides sp. JS614 aminoglycoside/hydroxyurea antibiotic resistance kinase YP_923089.1 2019140 D 196162 CDS YP_923090.1 119716125 4596394 2020069..2020725 1 NC_008699.1 PFAM: MOSC domain containing protein; KEGG: sma:SAV4995 hypothetical protein; MOSC domain-containing protein 2020725 4596394 Noca_1893 Nocardioides sp. JS614 MOSC domain-containing protein YP_923090.1 2020069 D 196162 CDS YP_923091.1 119716126 4596395 2020810..2022651 1 NC_008699.1 PFAM: AMP-dependent synthetase and ligase; KEGG: mmc:Mmcs_3602 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 2022651 4596395 Noca_1894 Nocardioides sp. JS614 AMP-dependent synthetase and ligase YP_923091.1 2020810 D 196162 CDS YP_923092.1 119716127 4596396 2022738..2023424 1 NC_008699.1 KEGG: fal:FRAAL2178 hypothetical protein; hypothetical protein 2023424 4596396 Noca_1895 Nocardioides sp. JS614 hypothetical protein YP_923092.1 2022738 D 196162 CDS YP_923093.1 119716128 4596397 2023424..2024986 1 NC_008699.1 KEGG: rha:RHA1_ro06213 possible DNA-directed DNA polymerase; putative DNA-directed DNA polymerase 2024986 4596397 Noca_1896 Nocardioides sp. JS614 putative DNA-directed DNA polymerase YP_923093.1 2023424 D 196162 CDS YP_923094.1 119716129 4596398 2025002..2028439 1 NC_008699.1 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase.; error-prone DNA polymerase 2028439 dnaE2 4596398 dnaE2 Nocardioides sp. JS614 error-prone DNA polymerase YP_923094.1 2025002 D 196162 CDS YP_923095.1 119716130 4596399 2028451..2029731 1 NC_008699.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 2029731 4596399 Noca_1898 Nocardioides sp. JS614 coproporphyrinogen III oxidase YP_923095.1 2028451 D 196162 CDS YP_923096.1 119716131 4596400 2029759..2030226 1 NC_008699.1 PFAM: TM2 domain containing protein+B7201; KEGG: rha:RHA1_ro01010 hypothetical protein; TM2 domain-containing protein 2030226 4596400 Noca_1899 Nocardioides sp. JS614 TM2 domain-containing protein YP_923096.1 2029759 D 196162 CDS YP_923097.1 119716132 4596401 complement(2030262..2031125) 1 NC_008699.1 KEGG: mmc:Mmcs_2324 hypothetical protein; hypothetical protein 2031125 4596401 Noca_1900 Nocardioides sp. JS614 hypothetical protein YP_923097.1 2030262 R 196162 CDS YP_923098.1 119716133 4596402 complement(2031166..2031411) 1 NC_008699.1 hypothetical protein 2031411 4596402 Noca_1901 Nocardioides sp. JS614 hypothetical protein YP_923098.1 2031166 R 196162 CDS YP_923099.1 119716134 4596403 complement(2031430..2032293) 1 NC_008699.1 PFAM: beta-lactamase domain protein; KEGG: mbo:Mb1948 hypothetical protein; beta-lactamase domain-containing protein 2032293 4596403 Noca_1902 Nocardioides sp. JS614 beta-lactamase domain-containing protein YP_923099.1 2031430 R 196162 CDS YP_923100.1 119716135 4596404 2032442..2033455 1 NC_008699.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 2033455 hrcA 4596404 hrcA Nocardioides sp. JS614 heat-inducible transcription repressor YP_923100.1 2032442 D 196162 CDS YP_923101.1 119716136 4596405 2033518..2034693 1 NC_008699.1 TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ central domain protein; heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: sma:SAV5570 putative DnaJ protein; chaperone protein DnaJ 2034693 4596405 Noca_1904 Nocardioides sp. JS614 chaperone protein DnaJ YP_923101.1 2033518 D 196162 CDS YP_923102.1 119716137 4596406 2034702..2035442 1 NC_008699.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 2035442 4596406 Noca_1905 Nocardioides sp. JS614 16S ribosomal RNA methyltransferase RsmE YP_923102.1 2034702 D 196162 CDS YP_923103.1 119716138 4596407 complement(2035511..2036395) 1 NC_008699.1 KEGG: rxy:Rxyl_2197 hypothetical protein; hypothetical protein 2036395 4596407 Noca_1906 Nocardioides sp. JS614 hypothetical protein YP_923103.1 2035511 R 196162 CDS YP_923104.1 119716139 4596408 complement(2036423..2037364) 1 NC_008699.1 hypothetical protein 2037364 4596408 Noca_1907 Nocardioides sp. JS614 hypothetical protein YP_923104.1 2036423 R 196162 CDS YP_923105.1 119716140 4596409 complement(2037361..2037861) 1 NC_008699.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: tfu:Tfu_0842 putative RNA polymerase ECF-subfamily sigma factor; sigma-70 factor 2037861 4596409 Noca_1908 Nocardioides sp. JS614 sigma-70 factor YP_923105.1 2037361 R 196162 CDS YP_923106.1 119716141 4596410 2037929..2038267 1 NC_008699.1 PFAM: histidine triad (HIT) protein; KEGG: sma:SAV5575 protein kinase C inhibitor (HIT family); histidine triad (HIT) protein 2038267 4596410 Noca_1909 Nocardioides sp. JS614 histidine triad (HIT) protein YP_923106.1 2037929 D 196162 CDS YP_923107.1 119716142 4596411 2038264..2039505 1 NC_008699.1 KEGG: sus:Acid_2373 calcium-binding EF-hand-containing protein; hypothetical protein 2039505 4596411 Noca_1910 Nocardioides sp. JS614 hypothetical protein YP_923107.1 2038264 D 196162 CDS YP_923108.1 119716143 4596412 complement(2039493..2039798) 1 NC_008699.1 hypothetical protein 2039798 4596412 Noca_1911 Nocardioides sp. JS614 hypothetical protein YP_923108.1 2039493 R 196162 CDS YP_923109.1 119716144 4596413 2039900..2040937 1 NC_008699.1 PFAM: PhoH family protein; KEGG: tfu:Tfu_0844 phosphate starvation-inducible protein PhoH predicted ATPase; PhoH family protein 2040937 4596413 Noca_1912 Nocardioides sp. JS614 PhoH family protein YP_923109.1 2039900 D 196162 CDS YP_923110.1 119716145 4596360 2040954..2041403 1 NC_008699.1 PFAM: protein of unknown function UPF0054; KEGG: tfu:Tfu_0845 protein of unknown function UPF0054; putative metalloprotease 2041403 4596360 Noca_1913 Nocardioides sp. JS614 putative metalloprotease YP_923110.1 2040954 D 196162 CDS YP_923111.1 119716146 4596361 2041435..2042727 1 NC_008699.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: pac:PPA0938 conserved protein, putative hemolysin; CBS domain-containing protein 2042727 4596361 Noca_1914 Nocardioides sp. JS614 CBS domain-containing protein YP_923111.1 2041435 D 196162 CDS YP_923112.1 119716147 4596362 2042720..2043070 1 NC_008699.1 KEGG: sma:SAV5589 hypothetical protein; hypothetical protein 2043070 4596362 Noca_1915 Nocardioides sp. JS614 hypothetical protein YP_923112.1 2042720 D 196162 CDS YP_923113.1 119716148 4596363 2043128..2044507 1 NC_008699.1 PFAM: FAD linked oxidase domain protein; KEGG: rha:RHA1_ro04208 hypothetical protein; FAD linked oxidase domain-containing protein 2044507 4596363 Noca_1916 Nocardioides sp. JS614 FAD linked oxidase domain-containing protein YP_923113.1 2043128 D 196162 CDS YP_923114.1 119716149 4596364 2044504..2045778 1 NC_008699.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rha:RHA1_ro04207 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 2045778 4596364 Noca_1917 Nocardioides sp. JS614 cyclopropane-fatty-acyl-phospholipid synthase YP_923114.1 2044504 D 196162 CDS YP_923115.1 119716150 4596365 2045848..2046621 1 NC_008699.1 PFAM: Siderophore-interacting protein; FAD-binding 9, siderophore-interacting domain protein; KEGG: rha:RHA1_ro06437 hypothetical protein; siderophore-interacting protein 2046621 4596365 Noca_1918 Nocardioides sp. JS614 siderophore-interacting protein YP_923115.1 2045848 D 196162 CDS YP_923116.1 119716151 4596366 2046618..2047559 1 NC_008699.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 2047559 era 4596366 era Nocardioides sp. JS614 GTP-binding protein Era YP_923116.1 2046618 D 196162 CDS YP_923117.1 119716152 4596367 2047559..2047945 1 NC_008699.1 KEGG: sal:Sala_2850 hypothetical protein; hypothetical protein 2047945 4596367 Noca_1920 Nocardioides sp. JS614 hypothetical protein YP_923117.1 2047559 D 196162 CDS YP_923118.1 119716153 4596368 complement(2047948..2048817) 1 NC_008699.1 hypothetical protein 2048817 4596368 Noca_1921 Nocardioides sp. JS614 hypothetical protein YP_923118.1 2047948 R 196162 CDS YP_923119.1 119716154 4596369 complement(2048814..2049614) 1 NC_008699.1 hypothetical protein 2049614 4596369 Noca_1922 Nocardioides sp. JS614 hypothetical protein YP_923119.1 2048814 R 196162 CDS YP_923120.1 119716155 4596370 2049787..2051322 1 NC_008699.1 PFAM: ATP-binding region, ATPase domain protein domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: mtc:MT1410 sensory box protein/anti-anti-sigma factor; stage II sporulation E family protein 2051322 4596370 Noca_1923 Nocardioides sp. JS614 stage II sporulation E family protein YP_923120.1 2049787 D 196162 CDS YP_923121.1 119716156 4596371 complement(2051292..2052038) 1 NC_008699.1 PFAM: GAF domain protein; ANTAR domain protein; KEGG: sma:SAV1055 hypothetical protein; ANTAR domain-containing protein 2052038 4596371 Noca_1924 Nocardioides sp. JS614 ANTAR domain-containing protein YP_923121.1 2051292 R 196162 CDS YP_923122.1 119716157 4596372 complement(2052035..2052883) 1 NC_008699.1 PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: fra:Francci3_3755 sigma 28 subunit; sigma-70 region 4 domain-containing protein 2052883 4596372 Noca_1925 Nocardioides sp. JS614 sigma-70 region 4 domain-containing protein YP_923122.1 2052035 R 196162 CDS YP_923123.1 119716158 4596373 2053169..2054350 1 NC_008699.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sco:SCO6706 glutathione-dependent aldehyde dehydrogenase; alcohol dehydrogenase 2054350 4596373 Noca_1926 Nocardioides sp. JS614 alcohol dehydrogenase YP_923123.1 2053169 D 196162 CDS YP_923124.1 119716159 4596374 2054465..2056207 1 NC_008699.1 TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: tfu:Tfu_0850 yeast 2-isopropylmalate synthase; 2-isopropylmalate synthase 2056207 4596374 Noca_1927 Nocardioides sp. JS614 2-isopropylmalate synthase YP_923124.1 2054465 D 196162 CDS YP_923125.1 119716160 4596375 complement(2056217..2058979) 1 NC_008699.1 KEGG: psb:Psyr_2940 PAS; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; MASE1 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 2058979 4596375 Noca_1928 Nocardioides sp. JS614 PAS/PAC sensor signal transduction histidine kinase YP_923125.1 2056217 R 196162 CDS YP_923126.1 119716161 4596376 2059104..2059928 1 NC_008699.1 PFAM: alpha/beta hydrolase fold; KEGG: gme:Gmet_0263 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 2059928 4596376 Noca_1929 Nocardioides sp. JS614 alpha/beta hydrolase fold protein YP_923126.1 2059104 D 196162 CDS YP_923127.1 119716162 4596377 2059958..2060692 1 NC_008699.1 TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O, RecO; KEGG: sco:SCO2510 DNA repair protein RecO (recombination protein O); DNA repair protein RecO 2060692 4596377 Noca_1930 Nocardioides sp. JS614 DNA repair protein RecO YP_923127.1 2059958 D 196162 CDS YP_923128.1 119716163 4596378 2060803..2062074 1 NC_008699.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: sth:STH843 two-component sensor histidine kinase; ATPase domain-containing protein 2062074 4596378 Noca_1931 Nocardioides sp. JS614 ATPase domain-containing protein YP_923128.1 2060803 D 196162 CDS YP_923129.1 119716164 4599837 2062114..2062929 1 NC_008699.1 KEGG: tfu:Tfu_0853 di-trans-poly-cis-decaprenylcistransferase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl pyrophosphate synthetase 2062929 4599837 Noca_1932 Nocardioides sp. JS614 undecaprenyl pyrophosphate synthetase YP_923129.1 2062114 D 196162 CDS YP_923130.1 119716165 4599838 2062938..2064545 1 NC_008699.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: sth:STH843 two-component sensor histidine kinase; ATPase domain-containing protein 2064545 4599838 Noca_1933 Nocardioides sp. JS614 ATPase domain-containing protein YP_923130.1 2062938 D 196162 CDS YP_923131.1 119716166 4599839 complement(2064569..2064976) 1 NC_008699.1 PFAM: ferric-uptake regulator; KEGG: sma:SAV5631 putative metal uptake regulation protein; zinc uptake regulator 2064976 4599839 Noca_1934 Nocardioides sp. JS614 zinc uptake regulator YP_923131.1 2064569 R 196162 CDS YP_923132.1 119716167 4599840 complement(2064963..2065976) 1 NC_008699.1 PFAM: ABC-3 protein; KEGG: sco:SCO2507 putative metal transport ABC transporter; ABC-3 protein 2065976 4599840 Noca_1935 Nocardioides sp. JS614 ABC-3 protein YP_923132.1 2064963 R 196162 CDS YP_923133.1 119716168 4599841 complement(2065973..2066836) 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV5633 putative manganese transport system ABC transporter ATP-binding protein; ABC transporter-like protein 2066836 4599841 Noca_1936 Nocardioides sp. JS614 ABC transporter-like protein YP_923133.1 2065973 R 196162 CDS YP_923134.1 119716169 4599842 complement(2066833..2067768) 1 NC_008699.1 PFAM: periplasmic solute binding protein; KEGG: sco:SCO2505 putative ABC-transporter metal-binding lipoprotein; periplasmic solute binding protein 2067768 4599842 Noca_1937 Nocardioides sp. JS614 periplasmic solute binding protein YP_923134.1 2066833 R 196162 CDS YP_923135.1 119716170 4599843 2067916..2069697 1 NC_008699.1 KEGG: sma:SAV2712 hypothetical protein; periplasmic component of the Tol biopolymer transport system-like 2069697 4599843 Noca_1938 Nocardioides sp. JS614 periplasmic component of the Tol biopolymer transport system-like YP_923135.1 2067916 D 196162 CDS YP_923136.1 119716171 4599844 2069739..2070059 1 NC_008699.1 KEGG: tfu:Tfu_0860 hypothetical protein; hypothetical protein 2070059 4599844 Noca_1939 Nocardioides sp. JS614 hypothetical protein YP_923136.1 2069739 D 196162 CDS YP_923137.1 119716172 4599845 2070120..2071535 1 NC_008699.1 Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase 2071535 4599845 Noca_1940 Nocardioides sp. JS614 glycyl-tRNA synthetase YP_923137.1 2070120 D 196162 CDS YP_923138.1 119716173 4599846 2071545..2072315 1 NC_008699.1 hypothetical protein 2072315 4599846 Noca_1941 Nocardioides sp. JS614 hypothetical protein YP_923138.1 2071545 D 196162 CDS YP_923139.1 119716174 4599847 2072359..2073519 1 NC_008699.1 TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; KEGG: pac:PPA0954 TIM-barrel enzyme, NifR3 family; nifR3 family TIM-barrel protein 2073519 4599847 Noca_1942 Nocardioides sp. JS614 nifR3 family TIM-barrel protein YP_923139.1 2072359 D 196162 CDS YP_923140.1 119716175 4599848 2073666..2074535 1 NC_008699.1 KEGG: rha:RHA1_ro10028 possible peptidase; hypothetical protein 2074535 4599848 Noca_1943 Nocardioides sp. JS614 hypothetical protein YP_923140.1 2073666 D 196162 CDS YP_923141.1 119716176 4599849 complement(2074566..2075252) 1 NC_008699.1 hypothetical protein 2075252 4599849 Noca_1944 Nocardioides sp. JS614 hypothetical protein YP_923141.1 2074566 R 196162 CDS YP_923142.1 119716177 4599850 2075341..2076612 1 NC_008699.1 KEGG: fra:Francci3_1281 deoxyguanosinetriphosphate triphosphohydrolase; TIGRFAM: putative deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; putative deoxyguanosinetriphosphate triphosphohydrolase 2076612 4599850 Noca_1945 Nocardioides sp. JS614 putative deoxyguanosinetriphosphate triphosphohydrolase YP_923142.1 2075341 D 196162 CDS YP_923143.1 119716178 4599851 2076789..2077703 1 NC_008699.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: sma:SAV2735 dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase 2077703 4599851 Noca_1946 Nocardioides sp. JS614 D-isomer specific 2-hydroxyacid dehydrogenase YP_923143.1 2076789 D 196162 CDS YP_923144.1 119716179 4599852 2077725..2080523 1 NC_008699.1 KEGG: pac:PPA0957 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger, CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core, N-terminal domain; SMART: Hedgehog/intein hint domain protein; Toprim sub domain protein; DNA primase DnaG, DnaB-binding; DNA primase 2080523 4599852 Noca_1947 Nocardioides sp. JS614 DNA primase YP_923144.1 2077725 D 196162 CDS YP_923145.1 119716180 4599853 2080520..2081041 1 NC_008699.1 KEGG: tfu:Tfu_0870 hypothetical protein; hypothetical protein 2081041 4599853 Noca_1948 Nocardioides sp. JS614 hypothetical protein YP_923145.1 2080520 D 196162 CDS YP_923146.1 119716181 4599855 2081269..2082153 1 NC_008699.1 KEGG: rde:RD1_2353 hypothetical protein; hypothetical protein 2082153 4599855 Noca_1949 Nocardioides sp. JS614 hypothetical protein YP_923146.1 2081269 D 196162 CDS YP_923147.1 119716182 4599856 complement(2082175..2082903) 1 NC_008699.1 KEGG: sus:Acid_2413 hypothetical protein; hypothetical protein 2082903 4599856 Noca_1950 Nocardioides sp. JS614 hypothetical protein YP_923147.1 2082175 R 196162 CDS YP_923148.1 119716183 4599857 complement(2082948..2083661) 1 NC_008699.1 PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: ade:Adeh_2146 cytochrome c biogenesis protein; cytochrome c biogenesis protein, transmembrane region 2083661 4599857 Noca_1951 Nocardioides sp. JS614 cytochrome c biogenesis protein, transmembrane region YP_923148.1 2082948 R 196162 CDS YP_923149.1 119716184 4599858 2083807..2084454 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mbu:Mbur_0983 ABC heme exporter, ATPase subunit; ABC transporter-like protein 2084454 4599858 Noca_1952 Nocardioides sp. JS614 ABC transporter-like protein YP_923149.1 2083807 D 196162 CDS YP_923150.1 119716185 4599859 2084451..2085113 1 NC_008699.1 PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: dra:DR0407 cytochrome c-type biogenesis protein, heme exporter protein B; cytochrome c-type biogenesis protein CcmB 2085113 4599859 Noca_1953 Nocardioides sp. JS614 cytochrome c-type biogenesis protein CcmB YP_923150.1 2084451 D 196162 CDS YP_923151.1 119716186 4599860 2085206..2086603 1 NC_008699.1 KEGG: ade:Adeh_3151 putative lipoprotein; putative lipoprotein 2086603 4599860 Noca_1954 Nocardioides sp. JS614 putative lipoprotein YP_923151.1 2085206 D 196162 CDS YP_923152.1 119716187 4599861 2086615..2087379 1 NC_008699.1 PFAM: cytochrome c assembly protein; KEGG: dra:DR0348 cytochrome c-type biogenesis protein, heme exporter protein C; cytochrome c assembly protein 2087379 4599861 Noca_1955 Nocardioides sp. JS614 cytochrome c assembly protein YP_923152.1 2086615 D 196162 CDS YP_923153.1 119716188 4599862 2087372..2087521 1 NC_008699.1 hypothetical protein 2087521 4599862 Noca_1956 Nocardioides sp. JS614 hypothetical protein YP_923153.1 2087372 D 196162 CDS YP_923154.1 119716189 4599863 2087518..2087982 1 NC_008699.1 PFAM: CcmE/CycJ protein; KEGG: rpb:RPB_3449 CcmE/CycJ protein; CcmE/CycJ protein 2087982 4599863 Noca_1957 Nocardioides sp. JS614 CcmE/CycJ protein YP_923154.1 2087518 D 196162 CDS YP_923155.1 119716190 4599864 2087984..2089960 1 NC_008699.1 PFAM: cytochrome c assembly protein; KEGG: mxa:MXAN_3253 cytochrome c-type biogenesis protein CcmF; cytochrome c assembly protein 2089960 4599864 Noca_1958 Nocardioides sp. JS614 cytochrome c assembly protein YP_923155.1 2087984 D 196162 CDS YP_923156.1 119716191 4599865 2089957..2090526 1 NC_008699.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; Thioredoxin domain; KEGG: mxa:MXAN_3252 thiol:disulfide interchange protein DsbE; redoxin domain-containing protein 2090526 4599865 Noca_1959 Nocardioides sp. JS614 redoxin domain-containing protein YP_923156.1 2089957 D 196162 CDS YP_923157.1 119716192 4599866 2090523..2091050 1 NC_008699.1 PFAM: cytochrome C biogenesis protein; KEGG: dge:Dgeo_1249 cytochrome c biogenesis protein; cytochrome C biogenesis protein 2091050 4599866 Noca_1960 Nocardioides sp. JS614 cytochrome C biogenesis protein YP_923157.1 2090523 D 196162 CDS YP_923158.1 119716193 4599867 2091047..2091937 1 NC_008699.1 KEGG: bbr:BB2811 cytochrome C-type biogenesis protein; hypothetical protein 2091937 4599867 Noca_1961 Nocardioides sp. JS614 hypothetical protein YP_923158.1 2091047 D 196162 CDS YP_923159.1 119716194 4599868 2091934..2093280 1 NC_008699.1 PFAM: glutamyl-tRNA reductase; Shikimate/quinate 5-dehydrogenase; KEGG: rxy:Rxyl_1979 shikimate/quinate 5-dehydrogenase; glutamyl-tRNA reductase 2093280 4599868 Noca_1962 Nocardioides sp. JS614 glutamyl-tRNA reductase YP_923159.1 2091934 D 196162 CDS YP_923160.1 119716195 4599869 complement(2093217..2093954) 1 NC_008699.1 PFAM: LmbE family protein; KEGG: sco:SCO0804 hypothetical protein; LmbE family protein 2093954 4599869 Noca_1963 Nocardioides sp. JS614 LmbE family protein YP_923160.1 2093217 R 196162 CDS YP_923161.1 119716196 4599870 2093994..2095016 1 NC_008699.1 KEGG: sco:SCO0559 hypothetical protein; hypothetical protein 2095016 4599870 Noca_1964 Nocardioides sp. JS614 hypothetical protein YP_923161.1 2093994 D 196162 CDS YP_923162.1 119716197 4599871 2095048..2095896 1 NC_008699.1 PFAM: protein of unknown function DUF72; KEGG: rha:RHA1_ro02437 hypothetical protein; hypothetical protein 2095896 4599871 Noca_1965 Nocardioides sp. JS614 hypothetical protein YP_923162.1 2095048 D 196162 CDS YP_923163.1 119716198 4599873 complement(2096111..2097322) 1 NC_008699.1 PFAM: phage integrase family protein; KEGG: mmc:Mmcs_1422 phage integrase; phage integrase family protein 2097322 4599873 Noca_1966 Nocardioides sp. JS614 phage integrase family protein YP_923163.1 2096111 R 196162 CDS YP_923164.1 119716199 4599874 complement(2097322..2097954) 1 NC_008699.1 hypothetical protein 2097954 4599874 Noca_1967 Nocardioides sp. JS614 hypothetical protein YP_923164.1 2097322 R 196162 CDS YP_923165.1 119716200 4598280 2098245..2098616 1 NC_008699.1 hypothetical protein 2098616 4598280 Noca_1968 Nocardioides sp. JS614 hypothetical protein YP_923165.1 2098245 D 196162 CDS YP_923166.1 119716201 4598281 2098613..2099647 1 NC_008699.1 hypothetical protein 2099647 4598281 Noca_1969 Nocardioides sp. JS614 hypothetical protein YP_923166.1 2098613 D 196162 CDS YP_923167.1 119716202 4598282 2099818..2100768 1 NC_008699.1 hypothetical protein 2100768 4598282 Noca_1970 Nocardioides sp. JS614 hypothetical protein YP_923167.1 2099818 D 196162 CDS YP_923168.1 119716203 4598283 2100839..2101267 1 NC_008699.1 hypothetical protein 2101267 4598283 Noca_1971 Nocardioides sp. JS614 hypothetical protein YP_923168.1 2100839 D 196162 CDS YP_923169.1 119716204 4598284 2101396..2102808 1 NC_008699.1 hypothetical protein 2102808 4598284 Noca_1972 Nocardioides sp. JS614 hypothetical protein YP_923169.1 2101396 D 196162 CDS YP_923170.1 119716205 4598285 2103090..2103407 1 NC_008699.1 hypothetical protein 2103407 4598285 Noca_1973 Nocardioides sp. JS614 hypothetical protein YP_923170.1 2103090 D 196162 CDS YP_923171.1 119716206 4598286 complement(2103474..2105081) 1 NC_008699.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: aba:Acid345_1526 methyl-accepting chemotaxis sensory transducer; chemotaxis sensory transducer 2105081 4598286 Noca_1974 Nocardioides sp. JS614 chemotaxis sensory transducer YP_923171.1 2103474 R 196162 CDS YP_923172.1 119716207 4598287 2105193..2105423 1 NC_008699.1 KEGG: sco:SCO4166 integral membrane protein; hypothetical protein 2105423 4598287 Noca_1975 Nocardioides sp. JS614 hypothetical protein YP_923172.1 2105193 D 196162 CDS YP_923173.1 119716208 4598288 complement(2105464..2105679) 1 NC_008699.1 KEGG: mmc:Mmcs_3634 hypothetical protein; hypothetical protein 2105679 4598288 Noca_1976 Nocardioides sp. JS614 hypothetical protein YP_923173.1 2105464 R 196162 CDS YP_923174.1 119716209 4598289 complement(2105763..2108981) 1 NC_008699.1 KEGG: mca:MCA1204 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase 2108981 4598289 Noca_1977 Nocardioides sp. JS614 PAS/PAC sensor hybrid histidine kinase YP_923174.1 2105763 R 196162 CDS YP_923175.1 119716210 4598290 complement(2109017..2110465) 1 NC_008699.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: nfa:nfa31920 putative serine/threonine protein kinase; protein kinase 2110465 4598290 Noca_1978 Nocardioides sp. JS614 protein kinase YP_923175.1 2109017 R 196162 CDS YP_923176.1 119716211 4598291 2110631..2111902 1 NC_008699.1 KEGG: sco:SCO1818 tyrosyl-tRNA synthetase; TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase, class Ib; RNA-binding S4 domain protein; tyrosyl-tRNA synthetase 2111902 4598291 Noca_1979 Nocardioides sp. JS614 tyrosyl-tRNA synthetase YP_923176.1 2110631 D 196162 CDS YP_923177.1 119716212 4598292 2111905..2112975 1 NC_008699.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; ferredoxin-dependent glutamate synthase; KEGG: dra:DR1031 (S)-2-hydroxy-acid oxidase; FMN-dependent alpha-hydroxy acid dehydrogenase 2112975 4598292 Noca_1980 Nocardioides sp. JS614 FMN-dependent alpha-hydroxy acid dehydrogenase YP_923177.1 2111905 D 196162 CDS YP_923178.1 119716213 4598296 2118930..2119895 1 NC_008699.1 KEGG: fra:Francci3_3166 tetratricopeptide TPR_2; hypothetical protein 2119895 4598296 Noca_1981 Nocardioides sp. JS614 hypothetical protein YP_923178.1 2118930 D 196162 CDS YP_923179.1 119716214 4598297 2119928..2120734 1 NC_008699.1 PFAM: protein phosphatase 2C domain protein; KEGG: cef:CE0037 putative protein phosphatase; protein phosphatase 2C domain-containing protein 2120734 4598297 Noca_1982 Nocardioides sp. JS614 protein phosphatase 2C domain-containing protein YP_923179.1 2119928 D 196162 CDS YP_923180.1 119716215 4598298 2120753..2121685 1 NC_008699.1 PFAM: alpha/beta hydrolase fold; KEGG: rha:RHA1_ro05212 probable hydrolase; alpha/beta hydrolase fold protein 2121685 4598298 Noca_1983 Nocardioides sp. JS614 alpha/beta hydrolase fold protein YP_923180.1 2120753 D 196162 CDS YP_923181.1 119716216 4598299 2121814..2122332 1 NC_008699.1 KEGG: sco:SCO2391 hypothetical protein; hypothetical protein 2122332 4598299 Noca_1984 Nocardioides sp. JS614 hypothetical protein YP_923181.1 2121814 D 196162 CDS YP_923182.1 119716217 4598300 complement(2122335..2122820) 1 NC_008699.1 hypothetical protein 2122820 4598300 Noca_1985 Nocardioides sp. JS614 hypothetical protein YP_923182.1 2122335 R 196162 CDS YP_923183.1 119716218 4598301 complement(2122871..2124301) 1 NC_008699.1 PFAM: carboxyl transferase; KEGG: mmc:Mmcs_3368 propionyl-CoA carboxylase; propionyl-CoA carboxylase 2124301 4598301 Noca_1986 Nocardioides sp. JS614 propionyl-CoA carboxylase YP_923183.1 2122871 R 196162 CDS YP_923184.1 119716219 4598302 complement(2124328..2125578) 1 NC_008699.1 PFAM: beta-ketoacyl synthase; KEGG: sma:SAV5785 putative 3-oxoacyl-ACP synthase II; 3-oxoacyl-ACP synthase 2125578 4598302 Noca_1987 Nocardioides sp. JS614 3-oxoacyl-ACP synthase YP_923184.1 2124328 R 196162 CDS YP_923185.1 119716220 4598303 complement(2125604..2125849) 1 NC_008699.1 PFAM: phosphopantetheine-binding; KEGG: sco:SCO2389 acyl carrier protein; phosphopantetheine-binding protein 2125849 4598303 Noca_1988 Nocardioides sp. JS614 phosphopantetheine-binding protein YP_923185.1 2125604 R 196162 CDS YP_923186.1 119716221 4598304 complement(2125883..2126887) 1 NC_008699.1 KEGG: sco:SCO2388 3-oxoacyl-[acyl-carrier-protein] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-oxoacyl-ACP synthase 2126887 4598304 Noca_1989 Nocardioides sp. JS614 3-oxoacyl-ACP synthase YP_923186.1 2125883 R 196162 CDS YP_923187.1 119716222 4598305 complement(2126887..2128086) 1 NC_008699.1 KEGG: tfu:Tfu_1973 acyl-carrier-protein S-malonyltransferase; (acyl-carrier-protein) S-malonyltransferase 2128086 4598305 Noca_1990 Nocardioides sp. JS614 (acyl-carrier-protein) S-malonyltransferase YP_923187.1 2126887 R 196162 CDS YP_923188.1 119716223 4598306 complement(2128165..2129376) 1 NC_008699.1 KEGG: sco:SCO2386 hypothetical protein; CdaR family transcriptional regulator 2129376 4598306 Noca_1991 Nocardioides sp. JS614 CdaR family transcriptional regulator YP_923188.1 2128165 R 196162 CDS YP_923189.1 119716224 4598307 2129507..2130451 1 NC_008699.1 PFAM: alpha/beta hydrolase fold; KEGG: fal:FRAAL6021 putative hydrolase; alpha/beta hydrolase fold protein 2130451 4598307 Noca_1992 Nocardioides sp. JS614 alpha/beta hydrolase fold protein YP_923189.1 2129507 D 196162 CDS YP_923190.1 119716225 4598308 complement(2130565..2133363) 1 NC_008699.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 2133363 aceE 4598308 aceE Nocardioides sp. JS614 pyruvate dehydrogenase subunit E1 YP_923190.1 2130565 R 196162 CDS YP_923191.1 119716226 4598309 2133539..2133982 1 NC_008699.1 KEGG: mmc:Mmcs_3360 hypothetical protein; hypothetical protein 2133982 4598309 Noca_1994 Nocardioides sp. JS614 hypothetical protein YP_923191.1 2133539 D 196162 CDS YP_923192.1 119716227 4598310 2134101..2135726 1 NC_008699.1 PFAM: AMP-dependent synthetase and ligase; KEGG: mmc:Mmcs_3758 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 2135726 4598310 Noca_1995 Nocardioides sp. JS614 AMP-dependent synthetase and ligase YP_923192.1 2134101 D 196162 CDS YP_923193.1 119716228 4598311 2135760..2136224 1 NC_008699.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sco:SCO2369 thiol-specific antioxidant protein; redoxin domain-containing protein 2136224 4598311 Noca_1996 Nocardioides sp. JS614 redoxin domain-containing protein YP_923193.1 2135760 D 196162 CDS YP_923194.1 119716229 4598313 2136688..2137848 1 NC_008699.1 PFAM: UspA domain protein; KEGG: mmc:Mmcs_1097 UspA; UspA domain-containing protein 2137848 4598313 Noca_1997 Nocardioides sp. JS614 UspA domain-containing protein YP_923194.1 2136688 D 196162 CDS YP_923195.1 119716230 4598314 2137927..2140326 1 NC_008699.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; PFAM: NAD-dependent epimerase/dehydratase; Male sterility C-terminal domain; KEGG: fal:FRAAL3759 putative fatty acyl coA reductase; HAD family hydrolase 2140326 4598314 Noca_1998 Nocardioides sp. JS614 HAD family hydrolase YP_923195.1 2137927 D 196162 CDS YP_923196.1 119716231 4598315 2140340..2141527 1 NC_008699.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rxy:Rxyl_2111 alcohol dehydrogenase, zinc-binding protein; alcohol dehydrogenase 2141527 4598315 Noca_1999 Nocardioides sp. JS614 alcohol dehydrogenase YP_923196.1 2140340 D 196162 CDS YP_923197.1 119716232 4598316 2141538..2143118 1 NC_008699.1 KEGG: rxy:Rxyl_2107 hypothetical protein; hypothetical protein 2143118 4598316 Noca_2000 Nocardioides sp. JS614 hypothetical protein YP_923197.1 2141538 D 196162 CDS YP_923198.1 119716233 4598623 2143123..2144049 1 NC_008699.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: fra:Francci3_2279 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 2144049 4598623 Noca_2001 Nocardioides sp. JS614 phospholipid/glycerol acyltransferase YP_923198.1 2143123 D 196162 CDS YP_923199.1 119716234 4598624 complement(2144060..2145205) 1 NC_008699.1 TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: lxx:Lxx21010 iron-dependent peroxidase; Dyp-type peroxidase family protein 2145205 4598624 Noca_2002 Nocardioides sp. JS614 Dyp-type peroxidase family protein YP_923199.1 2144060 R 196162 CDS YP_923200.1 119716235 4598625 complement(2145205..2145753) 1 NC_008699.1 PFAM: protein of unknown function DUF461; KEGG: mmc:Mmcs_1601 protein of unknown function DUF461; hypothetical protein 2145753 4598625 Noca_2003 Nocardioides sp. JS614 hypothetical protein YP_923200.1 2145205 R 196162 CDS YP_923201.1 119716236 4598626 complement(2145858..2146562) 1 NC_008699.1 KEGG: sma:SAV899 hypothetical protein; hypothetical protein 2146562 4598626 Noca_2004 Nocardioides sp. JS614 hypothetical protein YP_923201.1 2145858 R 196162 CDS YP_923202.1 119716237 4598627 2147198..2148049 1 NC_008699.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: mmc:Mmcs_0015 serine/threonine protein kinase; protein kinase 2148049 4598627 Noca_2005 Nocardioides sp. JS614 protein kinase YP_923202.1 2147198 D 196162 CDS YP_923203.1 119716238 4598628 complement(2148057..2148728) 1 NC_008699.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sco:SCO2143 two component system response regulator; response regulator receiver 2148728 4598628 Noca_2006 Nocardioides sp. JS614 response regulator receiver YP_923203.1 2148057 R 196162 CDS YP_923204.1 119716239 4598629 complement(2148713..2150239) 1 NC_008699.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: tfu:Tfu_1329 ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal; ATPase domain-containing protein 2150239 4598629 Noca_2007 Nocardioides sp. JS614 ATPase domain-containing protein YP_923204.1 2148713 R 196162 CDS YP_923205.1 119716240 4598630 complement(2150184..2150561) 1 NC_008699.1 KEGG: osa:4332873 Os03g0357500; hypothetical protein 2150561 4598630 Noca_2008 Nocardioides sp. JS614 hypothetical protein YP_923205.1 2150184 R 196162 CDS YP_923206.1 119716241 4598631 2150726..2152291 1 NC_008699.1 PFAM: AMP-dependent synthetase and ligase; KEGG: fra:Francci3_2165 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 2152291 4598631 Noca_2009 Nocardioides sp. JS614 AMP-dependent synthetase and ligase YP_923206.1 2150726 D 196162 CDS YP_923207.1 119716242 4598632 complement(2152288..2152833) 1 NC_008699.1 PFAM: nitrogen-fixing NifU domain protein; KEGG: lxx:Lxx21000 thioredoxin-like protein; NifU domain-containing protein 2152833 4598632 Noca_2010 Nocardioides sp. JS614 NifU domain-containing protein YP_923207.1 2152288 R 196162 CDS YP_923208.1 119716243 4598633 complement(2152830..2154776) 1 NC_008699.1 PFAM: GTP-binding protein, HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: pac:PPA1677 ferrous iron transport protein B; HSR1-like GTP-binding protein 2154776 4598633 Noca_2011 Nocardioides sp. JS614 HSR1-like GTP-binding protein YP_923208.1 2152830 R 196162 CDS YP_923209.1 119716244 4598634 complement(2154773..2155018) 1 NC_008699.1 PFAM: FeoA family protein; KEGG: lip:LI1082 Fe2+ transport system protein A; FeoA family protein 2155018 4598634 Noca_2012 Nocardioides sp. JS614 FeoA family protein YP_923209.1 2154773 R 196162 CDS YP_923210.1 119716245 4598635 2155598..2156731 1 NC_008699.1 PFAM: protein of unknown function DUF34; KEGG: rha:RHA1_ro01183 hypothetical protein; hypothetical protein 2156731 4598635 Noca_2013 Nocardioides sp. JS614 hypothetical protein YP_923210.1 2155598 D 196162 CDS YP_923211.1 119716246 4598636 2156804..2157508 1 NC_008699.1 PFAM: protein of unknown function DUF164; KEGG: fal:FRAAL2220 conserved hypothetical protein; putative coiled-coil domain; hypothetical protein 2157508 4598636 Noca_2014 Nocardioides sp. JS614 hypothetical protein YP_923211.1 2156804 D 196162 CDS YP_923212.1 119716247 4598637 2157505..2158710 1 NC_008699.1 PFAM: ribonuclease H; Phosphoglycerate mutase; KEGG: sma:SAV5877 hypothetical protein; phosphoglycerate mutase 2158710 4598637 Noca_2015 Nocardioides sp. JS614 phosphoglycerate mutase YP_923212.1 2157505 D 196162 CDS YP_923213.1 119716248 4598638 complement(2158832..2159587) 1 NC_008699.1 PFAM: protein of unknown function DUF328; KEGG: sco:SCO2297 hypothetical protein; hypothetical protein 2159587 4598638 Noca_2016 Nocardioides sp. JS614 hypothetical protein YP_923213.1 2158832 R 196162 CDS YP_923214.1 119716249 4598639 2159651..2161054 1 NC_008699.1 PFAM: ribonuclease II; KEGG: sma:SAV5880 ribonuclease R; ribonuclease II 2161054 4598639 Noca_2017 Nocardioides sp. JS614 ribonuclease II YP_923214.1 2159651 D 196162 CDS YP_923215.1 119716250 4598640 2161203..2162423 1 NC_008699.1 PFAM: phosphoribosyltransferase; dienelactone hydrolase; KEGG: mbo:Mb0586c hypothetical protein; phosphoribosyltransferase 2162423 4598640 Noca_2018 Nocardioides sp. JS614 phosphoribosyltransferase YP_923215.1 2161203 D 196162 CDS YP_923216.1 119716251 4598641 complement(2162401..2164926) 1 NC_008699.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rha:RHA1_ro07030 possible acyl-CoA synthetase; AMP-dependent synthetase and ligase 2164926 4598641 Noca_2019 Nocardioides sp. JS614 AMP-dependent synthetase and ligase YP_923216.1 2162401 R 196162 CDS YP_923217.1 119716252 4598642 complement(2164923..2165984) 1 NC_008699.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: fra:Francci3_1590 ABC transporter related; ABC transporter-like protein 2165984 4598642 Noca_2020 Nocardioides sp. JS614 ABC transporter-like protein YP_923217.1 2164923 R 196162 CDS YP_923218.1 119716253 4598643 complement(2165981..2167549) 1 NC_008699.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fra:Francci3_1591 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2167549 4598643 Noca_2021 Nocardioides sp. JS614 binding-protein-dependent transport system inner membrane protein YP_923218.1 2165981 R 196162 CDS YP_923219.1 119716254 4598644 complement(2167558..2168559) 1 NC_008699.1 PFAM: extracellular solute-binding protein, family 1; KEGG: fra:Francci3_1592 extracellular solute-binding protein, family 1; extracellular solute-binding protein 2168559 4598644 Noca_2022 Nocardioides sp. JS614 extracellular solute-binding protein YP_923219.1 2167558 R 196162 CDS YP_923220.1 119716255 4598645 2168656..2169744 1 NC_008699.1 KEGG: sil:SPO2120 amidinotransferase family protein; amidinotransferase family protein 2169744 4598645 Noca_2023 Nocardioides sp. JS614 amidinotransferase family protein YP_923220.1 2168656 D 196162 CDS YP_923221.1 119716256 4598646 complement(2169787..2170188) 1 NC_008699.1 KEGG: mbo:Mb2042 hypothetical protein; hypothetical protein 2170188 4598646 Noca_2024 Nocardioides sp. JS614 hypothetical protein YP_923221.1 2169787 R 196162 CDS YP_923222.1 119716257 4598647 complement(2170202..2170924) 1 NC_008699.1 KEGG: fra:Francci3_0955 conserved hypothetical protein; hypothetical protein 2170924 4598647 Noca_2025 Nocardioides sp. JS614 hypothetical protein YP_923222.1 2170202 R 196162 CDS YP_923223.1 119716258 4598648 2171263..2172630 1 NC_008699.1 KEGG: fal:FRAAL5813 hypothetical protein; hypothetical protein 2172630 4598648 Noca_2026 Nocardioides sp. JS614 hypothetical protein YP_923223.1 2171263 D 196162 CDS YP_923224.1 119716259 4598649 2172664..2173011 1 NC_008699.1 hypothetical protein 2173011 4598649 Noca_2027 Nocardioides sp. JS614 hypothetical protein YP_923224.1 2172664 D 196162 CDS YP_923225.1 119716260 4598650 2173001..2173480 1 NC_008699.1 hypothetical protein 2173480 4598650 Noca_2028 Nocardioides sp. JS614 hypothetical protein YP_923225.1 2173001 D 196162 CDS YP_923226.1 119716261 4598651 complement(2173858..2174196) 1 NC_008699.1 KEGG: cef:CE2619 putative transposase; hypothetical protein 2174196 4598651 Noca_2029 Nocardioides sp. JS614 hypothetical protein YP_923226.1 2173858 R 196162 CDS YP_923227.1 119716262 4598652 complement(2174177..2175616) 1 NC_008699.1 PFAM: Integrase, catalytic region; KEGG: mmc:Mmcs_5505 integrase, catalytic region; integrase catalytic subunit 2175616 4598652 Noca_2030 Nocardioides sp. JS614 integrase catalytic subunit YP_923227.1 2174177 R 196162 CDS YP_923228.1 119716263 4598654 complement(2176326..2176646) 1 NC_008699.1 PFAM: transposase IS3/IS911 family protein; KEGG: cef:CE2618 putative transposase; transposase IS3/IS911 family protein 2176646 4598654 Noca_2032 Nocardioides sp. JS614 transposase IS3/IS911 family protein YP_923228.1 2176326 R 196162 CDS YP_923229.1 119716264 4598655 2176765..2177253 1 NC_008699.1 KEGG: sco:SCO7806 DNA-binding protein; DNA-binding protein 2177253 4598655 Noca_2033 Nocardioides sp. JS614 DNA-binding protein YP_923229.1 2176765 D 196162 CDS YP_923230.1 119716265 4598656 complement(2177285..2178670) 1 NC_008699.1 PFAM: amino acid-binding ACT domain protein; malic enzyme domain protein; malic enzyme, NAD-binding; KEGG: rha:RHA1_ro00492 malate dehydrogenase (oxaloacetate-decarboxylating); malate dehydrogenase 2178670 4598656 Noca_2034 Nocardioides sp. JS614 malate dehydrogenase YP_923230.1 2177285 R 196162 CDS YP_923231.1 119716266 4598658 complement(2179170..2179937) 1 NC_008699.1 KEGG: mbo:Mb2021c hypothetical protein; hypothetical protein 2179937 4598658 Noca_2035 Nocardioides sp. JS614 hypothetical protein YP_923231.1 2179170 R 196162 CDS YP_923232.1 119716267 4598659 complement(2179971..2180330) 1 NC_008699.1 hypothetical protein 2180330 4598659 Noca_2036 Nocardioides sp. JS614 hypothetical protein YP_923232.1 2179971 R 196162 CDS YP_923233.1 119716268 4598660 2180462..2180926 1 NC_008699.1 KEGG: sma:SAV6236 hypothetical protein; hypothetical protein 2180926 4598660 Noca_2037 Nocardioides sp. JS614 hypothetical protein YP_923233.1 2180462 D 196162 CDS YP_923234.1 119716269 4598661 complement(2181044..2181871) 1 NC_008699.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: sco:SCO2266 methionine aminopeptidase; methionine aminopeptidase 2181871 4598661 Noca_2038 Nocardioides sp. JS614 methionine aminopeptidase YP_923234.1 2181044 R 196162 CDS YP_923235.1 119716270 4598662 complement(2182353..2183210) 1 NC_008699.1 hypothetical protein 2183210 4598662 Noca_2039 Nocardioides sp. JS614 hypothetical protein YP_923235.1 2182353 R 196162 CDS YP_923236.1 119716271 4598663 complement(2183254..2184510) 1 NC_008699.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: cef:CE0204 putative transport protein; hypothetical protein 2184510 4598663 Noca_2040 Nocardioides sp. JS614 hypothetical protein YP_923236.1 2183254 R 196162 CDS YP_923237.1 119716272 4595795 complement(2184532..2185695) 1 NC_008699.1 PFAM: glucose sorbosone dehydrogenase; KEGG: rha:RHA1_ro05704 hypothetical protein; glucose sorbosone dehydrogenase 2185695 4595795 Noca_2041 Nocardioides sp. JS614 glucose sorbosone dehydrogenase YP_923237.1 2184532 R 196162 CDS YP_923238.1 119716273 4595796 complement(2185754..2186641) 1 NC_008699.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 2186641 panB 4595796 panB Nocardioides sp. JS614 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_923238.1 2185754 R 196162 CDS YP_923239.1 119716274 4595797 2186799..2187548 1 NC_008699.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mmc:Mmcs_4099 methyltransferase type 11; type 11 methyltransferase 2187548 4595797 Noca_2043 Nocardioides sp. JS614 type 11 methyltransferase YP_923239.1 2186799 D 196162 CDS YP_923240.1 119716275 4595798 2187588..2189633 1 NC_008699.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 2189633 nadE 4595798 nadE Nocardioides sp. JS614 NAD synthetase YP_923240.1 2187588 D 196162 CDS YP_923241.1 119716276 4595799 2189903..2190370 1 NC_008699.1 hypothetical protein 2190370 4595799 Noca_2045 Nocardioides sp. JS614 hypothetical protein YP_923241.1 2189903 D 196162 CDS YP_923242.1 119716277 4595800 2190351..2191718 1 NC_008699.1 PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp; KEGG: sco:SCO2241 probable glutamine synthetase; L-glutamine synthetase 2191718 4595800 Noca_2046 Nocardioides sp. JS614 L-glutamine synthetase YP_923242.1 2190351 D 196162 CDS YP_923243.1 119716278 4595801 2191715..2192437 1 NC_008699.1 PFAM: glutamine amidotransferase class-I; KEGG: sco:SCO0603 amino transferase; glutamine amidotransferase 2192437 4595801 Noca_2047 Nocardioides sp. JS614 glutamine amidotransferase YP_923243.1 2191715 D 196162 CDS YP_923244.1 119716279 4595802 2192434..2195421 1 NC_008699.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 2195421 4595802 Noca_2048 Nocardioides sp. JS614 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase YP_923244.1 2192434 D 196162 CDS YP_923245.1 119716280 4595803 2195596..2195973 1 NC_008699.1 hypothetical protein 2195973 4595803 Noca_2049 Nocardioides sp. JS614 hypothetical protein YP_923245.1 2195596 D 196162 CDS YP_923246.1 119716281 4595804 complement(2195970..2196722) 1 NC_008699.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rha:RHA1_ro11203 response regulator, two-component system; response regulator receiver 2196722 4595804 Noca_2050 Nocardioides sp. JS614 response regulator receiver YP_923246.1 2195970 R 196162 CDS YP_923247.1 119716282 4595805 complement(2196787..2197281) 1 NC_008699.1 PFAM: regulatory protein, MarR; KEGG: rha:RHA1_ro01019 probable transcriptional regulator, MarR family; regulatory protein MarR 2197281 4595805 Noca_2051 Nocardioides sp. JS614 regulatory protein MarR YP_923247.1 2196787 R 196162 CDS YP_923248.1 119716283 4595806 2197392..2197967 1 NC_008699.1 PFAM: NADP oxidoreductase, coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: cgb:cg1421 putative dinucleotide-binding enzyme; NADP oxidoreductase, coenzyme F420-dependent 2197967 4595806 Noca_2052 Nocardioides sp. JS614 NADP oxidoreductase, coenzyme F420-dependent YP_923248.1 2197392 D 196162 CDS YP_923249.1 119716284 4595807 2198024..2198569 1 NC_008699.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nfa:nfa20320 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 2198569 4595807 Noca_2053 Nocardioides sp. JS614 glyoxalase/bleomycin resistance protein/dioxygenase YP_923249.1 2198024 D 196162 CDS YP_923250.1 119716285 4595808 2198566..2199711 1 NC_008699.1 PFAM: phospholipase/Carboxylesterase; KEGG: nph:NP0926A hypothetical protein; phospholipase/carboxylesterase 2199711 4595808 Noca_2054 Nocardioides sp. JS614 phospholipase/carboxylesterase YP_923250.1 2198566 D 196162 CDS YP_923251.1 119716286 4595809 2199708..2200487 1 NC_008699.1 PFAM: Hydratase/decarboxylase; KEGG: mxa:MXAN_0925 putative 4-oxalocrotonate decarboxylase; 4-oxalocrotonate decarboxylase 2200487 4595809 Noca_2055 Nocardioides sp. JS614 4-oxalocrotonate decarboxylase YP_923251.1 2199708 D 196162 CDS YP_923252.1 119716287 4595810 complement(2200491..2201129) 1 NC_008699.1 PFAM: cation efflux protein; KEGG: cgb:cg2271 Co/Zn/Cd efflux system component; cation efflux protein 2201129 4595810 Noca_2056 Nocardioides sp. JS614 cation efflux protein YP_923252.1 2200491 R 196162 CDS YP_923253.1 119716288 4595811 complement(2201126..2201884) 1 NC_008699.1 PFAM: polysaccharide deacetylase; KEGG: sco:SCO1129 secreted deacetylase; polysaccharide deacetylase 2201884 4595811 Noca_2057 Nocardioides sp. JS614 polysaccharide deacetylase YP_923253.1 2201126 R 196162 CDS YP_923254.1 119716289 4595812 complement(2201881..2203002) 1 NC_008699.1 PFAM: Monogalactosyldiacylglycerol synthase; KEGG: sco:SCO1126 hypothetical protein; monogalactosyldiacylglycerol synthase 2203002 4595812 Noca_2058 Nocardioides sp. JS614 monogalactosyldiacylglycerol synthase YP_923254.1 2201881 R 196162 CDS YP_923255.1 119716290 4595813 2203123..2203737 1 NC_008699.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: sco:SCO4133 integral membrane protein; undecaprenyl-diphosphatase 2203737 4595813 Noca_2059 Nocardioides sp. JS614 undecaprenyl-diphosphatase YP_923255.1 2203123 D 196162 CDS YP_923256.1 119716291 4595814 2203734..2204453 1 NC_008699.1 KEGG: fal:FRAAL3677 hypothetical protein; putative DedA family membrane protein; hypothetical protein 2204453 4595814 Noca_2060 Nocardioides sp. JS614 hypothetical protein YP_923256.1 2203734 D 196162 CDS YP_923257.1 119716292 4595815 2204632..2205942 1 NC_008699.1 KEGG: sma:SAV2242 hypothetical protein; hypothetical protein 2205942 4595815 Noca_2061 Nocardioides sp. JS614 hypothetical protein YP_923257.1 2204632 D 196162 CDS YP_923258.1 119716293 4595816 2205939..2206625 1 NC_008699.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: fra:Francci3_2401 two component transcriptional regulator, winged helix family; two component transcriptional regulator 2206625 4595816 Noca_2062 Nocardioides sp. JS614 two component transcriptional regulator YP_923258.1 2205939 D 196162 CDS YP_923259.1 119716294 4595817 2206622..2208067 1 NC_008699.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: gsu:GSU0452 sensor histidine kinase; ATPase domain-containing protein 2208067 4595817 Noca_2063 Nocardioides sp. JS614 ATPase domain-containing protein YP_923259.1 2206622 D 196162 CDS YP_923260.1 119716295 4595818 2208136..2209155 1 NC_008699.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: vpa:VP2408 hypothetical protein; PA-phosphatase-like phosphoesterase 2209155 4595818 Noca_2064 Nocardioides sp. JS614 PA-phosphatase-like phosphoesterase YP_923260.1 2208136 D 196162 CDS YP_923261.1 119716296 4595819 2209172..2211424 1 NC_008699.1 PFAM: glycosyl transferase, group 1; KEGG: rxy:Rxyl_2620 phosphatidyl-myo-inositol alpha-mannosyltransferase; group 1 glycosyl transferase 2211424 4595819 Noca_2065 Nocardioides sp. JS614 group 1 glycosyl transferase YP_923261.1 2209172 D 196162 CDS YP_923262.1 119716297 4595820 2211435..2212217 1 NC_008699.1 PFAM: LmbE family protein; KEGG: rha:RHA1_ro02076 possible LmbE-related protein; LmbE family protein 2212217 4595820 Noca_2066 Nocardioides sp. JS614 LmbE family protein YP_923262.1 2211435 D 196162 CDS YP_923263.1 119716298 4595821 2212469..2213116 1 NC_008699.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: sco:SCO3457 transmembrane protein; CDP-alcohol phosphatidyltransferase 2213116 4595821 Noca_2067 Nocardioides sp. JS614 CDP-alcohol phosphatidyltransferase YP_923263.1 2212469 D 196162 CDS YP_923264.1 119716299 4595822 2213140..2214414 1 NC_008699.1 KEGG: sco:SCO3456 putative secreted protein; putative ABC transporter solute-binding protein 2214414 4595822 Noca_2068 Nocardioides sp. JS614 putative ABC transporter solute-binding protein YP_923264.1 2213140 D 196162 CDS YP_923265.1 119716300 4595823 2214411..2215292 1 NC_008699.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cyb:CYB_0132 ABC transporter, permease protein; binding-protein-dependent transport systems inner membrane component 2215292 4595823 Noca_2069 Nocardioides sp. JS614 binding-protein-dependent transport systems inner membrane component YP_923265.1 2214411 D 196162 CDS YP_923266.1 119716301 4595824 2215289..2216104 1 NC_008699.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO3454 putative ABC-transporter membrane protein; binding-protein-dependent transport systems inner membrane component 2216104 4595824 Noca_2070 Nocardioides sp. JS614 binding-protein-dependent transport systems inner membrane component YP_923266.1 2215289 D 196162 CDS YP_923267.1 119716302 4595825 2216101..2217189 1 NC_008699.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: mmc:Mmcs_5124 ABC transporter related; ABC transporter-like protein 2217189 4595825 Noca_2071 Nocardioides sp. JS614 ABC transporter-like protein YP_923267.1 2216101 D 196162 CDS YP_923268.1 119716303 4595826 2217186..2217863 1 NC_008699.1 KEGG: sco:SCO3458 integral membrane protein; integral membrane protein 2217863 4595826 Noca_2072 Nocardioides sp. JS614 integral membrane protein YP_923268.1 2217186 D 196162 CDS YP_923269.1 119716304 4595827 complement(2218202..2219578) 1 NC_008699.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: sco:SCO3443 putative pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulfide oxidoreductase dimerisation region 2219578 4595827 Noca_2073 Nocardioides sp. JS614 pyridine nucleotide-disulfide oxidoreductase dimerisation region YP_923269.1 2218202 R 196162 CDS YP_923270.1 119716305 4595828 complement(2219575..2219883) 1 NC_008699.1 PFAM: protein of unknown function DUF427; KEGG: dge:Dgeo_1745 protein of unknown function DUF427; hypothetical protein 2219883 4595828 Noca_2074 Nocardioides sp. JS614 hypothetical protein YP_923270.1 2219575 R 196162 CDS YP_923271.1 119716306 4595829 complement(2219880..2220773) 1 NC_008699.1 PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: mpa:MAP2941c hypothetical protein; cytochrome c biogenesis protein, transmembrane region 2220773 4595829 Noca_2075 Nocardioides sp. JS614 cytochrome c biogenesis protein, transmembrane region YP_923271.1 2219880 R 196162 CDS YP_923272.1 119716307 4595521 complement(2220790..2221299) 1 NC_008699.1 PFAM: Redoxin domain protein; KEGG: mbo:Mb1704 probable conserved lipoprotein DsbF; redoxin domain-containing protein 2221299 4595521 Noca_2076 Nocardioides sp. JS614 redoxin domain-containing protein YP_923272.1 2220790 R 196162 CDS YP_923273.1 119716308 4595522 complement(2221459..2222148) 1 NC_008699.1 PFAM: glutaredoxin; KEGG: sco:SCO3442 hypothetical protein; glutaredoxin 2222148 4595522 Noca_2077 Nocardioides sp. JS614 glutaredoxin YP_923273.1 2221459 R 196162 CDS YP_923274.1 119716309 4595523 complement(2222271..2222915) 1 NC_008699.1 PFAM: isochorismatase hydrolase; KEGG: cps:CPS_1616 isochorismatase family protein; isochorismatase hydrolase 2222915 4595523 Noca_2078 Nocardioides sp. JS614 isochorismatase hydrolase YP_923274.1 2222271 R 196162 CDS YP_923275.1 119716310 4595524 complement(2223028..2223993) 1 NC_008699.1 PFAM: protein of unknown function DUF81; KEGG: hma:rrnAC2453 hypothetical protein; hypothetical protein 2223993 4595524 Noca_2079 Nocardioides sp. JS614 hypothetical protein YP_923275.1 2223028 R 196162 CDS YP_923276.1 119716311 4595525 complement(2223996..2224466) 1 NC_008699.1 KEGG: fra:Francci3_1889 glycoside hydrolase 15-related; hypothetical protein 2224466 4595525 Noca_2080 Nocardioides sp. JS614 hypothetical protein YP_923276.1 2223996 R 196162 CDS YP_923277.1 119716312 4595526 2224806..2225213 1 NC_008699.1 PFAM: DoxX family protein; KEGG: mxa:MXAN_6975 DoxX family protein; DoxX family protein 2225213 4595526 Noca_2081 Nocardioides sp. JS614 DoxX family protein YP_923277.1 2224806 D 196162 CDS YP_923278.1 119716313 4595527 complement(2225403..2226137) 1 NC_008699.1 KEGG: nfa:nfa13250 hypothetical protein; hypothetical protein 2226137 4595527 Noca_2082 Nocardioides sp. JS614 hypothetical protein YP_923278.1 2225403 R 196162 CDS YP_923279.1 119716314 4595528 complement(2226232..2226810) 1 NC_008699.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: rba:RB9569 probable Mip; alkylhydroperoxidase 2226810 4595528 Noca_2083 Nocardioides sp. JS614 alkylhydroperoxidase YP_923279.1 2226232 R 196162 CDS YP_923280.1 119716315 4595529 2226909..2227601 1 NC_008699.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: mtc:MT1714 transcriptional regulator, Crp/Fnr family; cyclic nucleotide-binding protein 2227601 4595529 Noca_2084 Nocardioides sp. JS614 cyclic nucleotide-binding protein YP_923280.1 2226909 D 196162 CDS YP_923281.1 119716316 4595530 2227699..2228643 1 NC_008699.1 PFAM: Patatin; KEGG: rha:RHA1_ro01898 possible lipid acyl hydrolase; patatin 2228643 4595530 Noca_2085 Nocardioides sp. JS614 patatin YP_923281.1 2227699 D 196162 CDS YP_923282.1 119716317 4595531 complement(2228897..2230105) 1 NC_008699.1 KEGG: sil:SPO2232 hypothetical protein; hypothetical protein 2230105 4595531 Noca_2086 Nocardioides sp. JS614 hypothetical protein YP_923282.1 2228897 R 196162 CDS YP_923283.1 119716318 4595532 2230255..2232078 1 NC_008699.1 PFAM: Radical SAM domain protein; KEGG: sco:SCO3462 hypothetical protein; radical SAM domain-containing protein 2232078 4595532 Noca_2087 Nocardioides sp. JS614 radical SAM domain-containing protein YP_923283.1 2230255 D 196162 CDS YP_923284.1 119716319 4595533 complement(2231905..2233359) 1 NC_008699.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: sco:SCO3460 putative mercuric dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2233359 4595533 Noca_2088 Nocardioides sp. JS614 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_923284.1 2231905 R 196162 CDS YP_923285.1 119716320 4595534 complement(2233356..2233634) 1 NC_008699.1 hypothetical protein 2233634 4595534 Noca_2089 Nocardioides sp. JS614 hypothetical protein YP_923285.1 2233356 R 196162 CDS YP_923286.1 119716321 4595535 complement(2233631..2234194) 1 NC_008699.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sco:SCO3450 putative RNA polymerase sigma factor; sigma-70 region 2 domain-containing protein 2234194 4595535 Noca_2090 Nocardioides sp. JS614 sigma-70 region 2 domain-containing protein YP_923286.1 2233631 R 196162 CDS YP_923287.1 119716322 4595536 2234373..2235626 1 NC_008699.1 PFAM: transcriptional regulator domain protein; GAF domain protein; KEGG: sma:SAV7178 transcriptional regulator; transcriptional regulator 2235626 4595536 Noca_2091 Nocardioides sp. JS614 transcriptional regulator YP_923287.1 2234373 D 196162 CDS YP_923288.1 119716323 4595537 2235707..2237230 1 NC_008699.1 PFAM: aldehyde dehydrogenase; KEGG: sma:SAV7177 putative aldehyde dehydrogenase; aldehyde dehydrogenase 2237230 4595537 Noca_2092 Nocardioides sp. JS614 aldehyde dehydrogenase YP_923288.1 2235707 D 196162 CDS YP_923289.1 119716324 4595538 2237401..2238018 1 NC_008699.1 PFAM: protein of unknown function DUF1486; KEGG: mac:MA1575 hypothetical protein; hypothetical protein 2238018 4595538 Noca_2093 Nocardioides sp. JS614 hypothetical protein YP_923289.1 2237401 D 196162 CDS YP_923290.1 119716325 4595539 complement(2238076..2238381) 1 NC_008699.1 hypothetical protein 2238381 4595539 Noca_2094 Nocardioides sp. JS614 hypothetical protein YP_923290.1 2238076 R 196162 CDS YP_923291.1 119716326 4595540 complement(2238419..2239969) 1 NC_008699.1 PFAM: aldehyde dehydrogenase; KEGG: nfa:nfa3930 putative aldehyde dehydrogenase; aldehyde dehydrogenase 2239969 4595540 Noca_2095 Nocardioides sp. JS614 aldehyde dehydrogenase YP_923291.1 2238419 R 196162 CDS YP_923292.1 119716327 4595541 complement(2239966..2240400) 1 NC_008699.1 hypothetical protein 2240400 4595541 Noca_2096 Nocardioides sp. JS614 hypothetical protein YP_923292.1 2239966 R 196162 CDS YP_923293.1 119716328 4595542 complement(2240408..2241820) 1 NC_008699.1 PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; KEGG: abo:ABO_1174 GMC oxidoreductase family protein; glucose-methanol-choline oxidoreductase 2241820 4595542 Noca_2097 Nocardioides sp. JS614 glucose-methanol-choline oxidoreductase YP_923293.1 2240408 R 196162 CDS YP_923294.1 119716329 4595543 complement(2241817..2242416) 1 NC_008699.1 PFAM: regulatory protein, TetR; KEGG: nfa:nfa6460 putative transcriptional regulator; TetR family transcriptional regulator 2242416 4595543 Noca_2098 Nocardioides sp. JS614 TetR family transcriptional regulator YP_923294.1 2241817 R 196162 CDS YP_923295.1 119716330 4595544 2242607..2243365 1 NC_008699.1 hypothetical protein 2243365 4595544 Noca_2099 Nocardioides sp. JS614 hypothetical protein YP_923295.1 2242607 D 196162 CDS YP_923296.1 119716331 4595545 complement(2243435..2243671) 1 NC_008699.1 KEGG: mag:amb3531 hypothetical protein; hypothetical protein 2243671 4595545 Noca_2100 Nocardioides sp. JS614 hypothetical protein YP_923296.1 2243435 R 196162 CDS YP_923297.1 119716332 4599945 complement(2243747..2246482) 1 NC_008699.1 PFAM: multicopper oxidase, type 3; KEGG: pac:PPA0092 hypothetical protein; multicopper oxidase, type 3 2246482 4599945 Noca_2101 Nocardioides sp. JS614 multicopper oxidase, type 3 YP_923297.1 2243747 R 196162 CDS YP_923298.1 119716333 4599946 complement(2246479..2247615) 1 NC_008699.1 KEGG: pac:PPA0093 hypothetical membrane protein; hypothetical protein 2247615 4599946 Noca_2102 Nocardioides sp. JS614 hypothetical protein YP_923298.1 2246479 R 196162 CDS YP_923299.1 119716334 4599947 complement(2247653..2248132) 1 NC_008699.1 hypothetical protein 2248132 4599947 Noca_2103 Nocardioides sp. JS614 hypothetical protein YP_923299.1 2247653 R 196162 CDS YP_923300.1 119716335 4599948 complement(2248133..2248573) 1 NC_008699.1 PFAM: OsmC family protein; KEGG: rxy:Rxyl_0142 OsmC-like protein; OsmC family protein 2248573 4599948 Noca_2104 Nocardioides sp. JS614 OsmC family protein YP_923300.1 2248133 R 196162 CDS YP_923301.1 119716336 4599949 complement(2248629..2251307) 1 NC_008699.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 2251307 aceE 4599949 aceE Nocardioides sp. JS614 pyruvate dehydrogenase subunit E1 YP_923301.1 2248629 R 196162 CDS YP_923302.1 119716337 4599950 complement(2251355..2252032) 1 NC_008699.1 PFAM: regulatory protein, ArsR; KEGG: rha:RHA1_ro08261 possible transcriptional regulator, MarR family; transcriptional regulator 2252032 4599950 Noca_2106 Nocardioides sp. JS614 transcriptional regulator YP_923302.1 2251355 R 196162 CDS YP_923303.1 119716338 4599951 complement(2252089..2252703) 1 NC_008699.1 PFAM: protein of unknown function DUF664; KEGG: sco:SCO2990 hypothetical protein; hypothetical protein 2252703 4599951 Noca_2107 Nocardioides sp. JS614 hypothetical protein YP_923303.1 2252089 R 196162 CDS YP_923304.1 119716339 4599952 complement(2252736..2255084) 1 NC_008699.1 PFAM: peptidase S15; X-Pro dipeptidyl-peptidase C-terminal domain protein; KEGG: nfa:nfa43000 putative esterase; peptidase S15 2255084 4599952 Noca_2108 Nocardioides sp. JS614 peptidase S15 YP_923304.1 2252736 R 196162 CDS YP_923305.1 119716340 4599953 complement(2255102..2255632) 1 NC_008699.1 KEGG: sma:SAV6531 hypothetical protein; hypothetical protein 2255632 4599953 Noca_2109 Nocardioides sp. JS614 hypothetical protein YP_923305.1 2255102 R 196162 CDS YP_923306.1 119716341 4599954 complement(2255641..2256351) 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mmc:Mmcs_3016 ABC transporter related; ABC transporter-like protein 2256351 4599954 Noca_2110 Nocardioides sp. JS614 ABC transporter-like protein YP_923306.1 2255641 R 196162 CDS YP_923307.1 119716342 4599955 complement(2256348..2257166) 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bbr:BB1157 high-affinity branched-chain amino acid transport ATP-binding protein; ABC transporter-like protein 2257166 4599955 Noca_2111 Nocardioides sp. JS614 ABC transporter-like protein YP_923307.1 2256348 R 196162 CDS YP_923308.1 119716343 4599956 complement(2257153..2258283) 1 NC_008699.1 PFAM: inner-membrane translocator; KEGG: bxe:Bxe_A2754 ABC branched chain amino acid family transporter, inner membrane subunit; inner-membrane translocator 2258283 4599956 Noca_2112 Nocardioides sp. JS614 inner-membrane translocator YP_923308.1 2257153 R 196162 CDS YP_923309.1 119716344 4599957 complement(2258280..2259188) 1 NC_008699.1 PFAM: inner-membrane translocator; KEGG: mes:Meso_0478 inner-membrane translocator; inner-membrane translocator 2259188 4599957 Noca_2113 Nocardioides sp. JS614 inner-membrane translocator YP_923309.1 2258280 R 196162 CDS YP_923310.1 119716345 4599958 complement(2259185..2260609) 1 NC_008699.1 PFAM: Extracellular ligand-binding receptor; KEGG: tfu:Tfu_1779 hypothetical protein; extracellular ligand-binding receptor 2260609 4599958 Noca_2114 Nocardioides sp. JS614 extracellular ligand-binding receptor YP_923310.1 2259185 R 196162 CDS YP_923311.1 119716346 4599959 complement(2260606..2261691) 1 NC_008699.1 KEGG: mxa:MXAN_1131 hypothetical protein; hypothetical protein 2261691 4599959 Noca_2115 Nocardioides sp. JS614 hypothetical protein YP_923311.1 2260606 R 196162 CDS YP_923312.1 119716347 4599960 2261932..2262309 1 NC_008699.1 PFAM: DGPFAETKE family protein; KEGG: ade:Adeh_1007 DGPFAETKE domain-containing protein; DGPFAETKE family protein 2262309 4599960 Noca_2116 Nocardioides sp. JS614 DGPFAETKE family protein YP_923312.1 2261932 D 196162 CDS YP_923313.1 119716348 4599961 2262345..2263613 1 NC_008699.1 PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: mxa:MXAN_5731 RNA polymerase sigma-70 factor, ECF subfamily; sigma-70 region 2 domain-containing protein 2263613 4599961 Noca_2117 Nocardioides sp. JS614 sigma-70 region 2 domain-containing protein YP_923313.1 2262345 D 196162 CDS YP_923314.1 119716349 4599962 2263709..2264230 1 NC_008699.1 KEGG: nfa:nfa31490 hypothetical protein; hypothetical protein 2264230 4599962 Noca_2118 Nocardioides sp. JS614 hypothetical protein YP_923314.1 2263709 D 196162 CDS YP_923315.1 119716350 4599963 2264684..2267194 1 NC_008699.1 PFAM: ABC transporter related; KEGG: blo:BL1083 excinuclease ABC subunit A-like protein; ABC transporter-like protein 2267194 4599963 Noca_2119 Nocardioides sp. JS614 ABC transporter-like protein YP_923315.1 2264684 D 196162 CDS YP_923316.1 119716351 4599964 2267364..2268464 1 NC_008699.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rxy:Rxyl_1758 alcohol dehydrogenase, zinc-binding protein; alcohol dehydrogenase 2268464 4599964 Noca_2120 Nocardioides sp. JS614 alcohol dehydrogenase YP_923316.1 2267364 D 196162 CDS YP_923317.1 119716352 4599965 2268596..2268862 1 NC_008699.1 hypothetical protein 2268862 4599965 Noca_2121 Nocardioides sp. JS614 hypothetical protein YP_923317.1 2268596 D 196162 CDS YP_923318.1 119716353 4599966 2269010..2269612 1 NC_008699.1 PFAM: protein of unknown function DUF1326; KEGG: rde:RD1_2286 hypothetical protein; hypothetical protein 2269612 4599966 Noca_2122 Nocardioides sp. JS614 hypothetical protein YP_923318.1 2269010 D 196162 CDS YP_923319.1 119716354 4599967 2269698..2270432 1 NC_008699.1 KEGG: bca:BCE_A0200 hypothetical protein; hypothetical protein 2270432 4599967 Noca_2123 Nocardioides sp. JS614 hypothetical protein YP_923319.1 2269698 D 196162 CDS YP_923320.1 119716355 4599968 complement(2271013..2272056) 1 NC_008699.1 PFAM: high-affinity nickel-transporter; KEGG: mpa:MAP2924 NicT; high-affinity nickel-transporter 2272056 4599968 Noca_2124 Nocardioides sp. JS614 high-affinity nickel-transporter YP_923320.1 2271013 R 196162 CDS YP_923321.1 119716356 4599969 2272864..2274102 1 NC_008699.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: rha:RHA1_ro01400 probable transposase; transposase IS116/IS110/IS902 family protein 2274102 4599969 Noca_2125 Nocardioides sp. JS614 transposase IS116/IS110/IS902 family protein YP_923321.1 2272864 D 196162 CDS YP_923322.1 119716357 4599970 complement(2274395..2274859) 1 NC_008699.1 KEGG: mmc:Mmcs_4295 integrase, catalytic region; integrase catalytic subunit 2274859 4599970 Noca_2126 Nocardioides sp. JS614 integrase catalytic subunit YP_923322.1 2274395 R 196162 CDS YP_923323.1 119716358 4599971 complement(2275946..2276941) 1 NC_008699.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: nfa:nfa10390 putative enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase/isomerase 2276941 4599971 Noca_2127 Nocardioides sp. JS614 enoyl-CoA hydratase/isomerase YP_923323.1 2275946 R 196162 CDS YP_923324.1 119716359 4599972 2277031..2277549 1 NC_008699.1 PFAM: cobalamin B12-binding domain protein; KEGG: hwa:HQ2301A methylmalonyl-CoA mutase, subunit B (cobalamin-binding subunit); cobalamin B12-binding domain-containing protein 2277549 4599972 Noca_2128 Nocardioides sp. JS614 cobalamin B12-binding domain-containing protein YP_923324.1 2277031 D 196162 CDS YP_923325.1 119716360 4599973 2277546..2278964 1 NC_008699.1 KEGG: rpd:RPD_3222 phenylacetate--CoA ligase; phenylacetate--CoA ligase 2278964 4599973 Noca_2129 Nocardioides sp. JS614 phenylacetate--CoA ligase YP_923325.1 2277546 D 196162 CDS YP_923326.1 119716361 4599190 2278964..2279947 1 NC_008699.1 KEGG: pfu:PF1947 hypothetical protein; TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; SMART: AAA ATPase; LAO/AO transport system ATPase 2279947 4599190 Noca_2130 Nocardioides sp. JS614 LAO/AO transport system ATPase YP_923326.1 2278964 D 196162 CDS YP_923327.1 119716362 4599191 2279960..2281669 1 NC_008699.1 KEGG: pho:PH1306 563aa long hypothetical methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; methylmalonyl-CoA mutase 2281669 4599191 Noca_2131 Nocardioides sp. JS614 methylmalonyl-CoA mutase YP_923327.1 2279960 D 196162 CDS YP_923328.1 119716363 4599192 2281734..2282474 1 NC_008699.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: mmc:Mmcs_4384 GntR-like protein; GntR family transcriptional regulator 2282474 4599192 Noca_2132 Nocardioides sp. JS614 GntR family transcriptional regulator YP_923328.1 2281734 D 196162 CDS YP_923329.1 119716364 4599193 complement(2282542..2283318) 1 NC_008699.1 PFAM: regulatory proteins, IclR; KEGG: rha:RHA1_ro02487 transcriptional regulator, IclR family; IclR family transcriptional regulator 2283318 4599193 Noca_2133 Nocardioides sp. JS614 IclR family transcriptional regulator YP_923329.1 2282542 R 196162 CDS YP_923330.1 119716365 4599194 complement(2283410..2284618) 1 NC_008699.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rha:RHA1_ro01381 possible ferredoxin--NAD(+) reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2284618 4599194 Noca_2134 Nocardioides sp. JS614 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_923330.1 2283410 R 196162 CDS YP_923331.1 119716366 4599195 complement(2284615..2284965) 1 NC_008699.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: sma:SAV6327 ferredoxin subunit of phenylpropionate dioxygenase; Rieske (2Fe-2S) domain-containing protein 2284965 4599195 Noca_2135 Nocardioides sp. JS614 Rieske (2Fe-2S) domain-containing protein YP_923331.1 2284615 R 196162 CDS YP_923332.1 119716367 4599196 complement(2285020..2285844) 1 NC_008699.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pfl:PFL_3855 cis-1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase; short-chain dehydrogenase/reductase SDR 2285844 4599196 Noca_2136 Nocardioides sp. JS614 short-chain dehydrogenase/reductase SDR YP_923332.1 2285020 R 196162 CDS YP_923333.1 119716368 4599197 complement(2285841..2287193) 1 NC_008699.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: fal:FRAAL6167 hypothetical protein; putative dioxygenase; Rieske (2Fe-2S) domain-containing protein 2287193 4599197 Noca_2137 Nocardioides sp. JS614 Rieske (2Fe-2S) domain-containing protein YP_923333.1 2285841 R 196162 CDS YP_923334.1 119716369 4599198 complement(2287183..2287923) 1 NC_008699.1 PFAM: class II aldolase/adducin family protein; KEGG: mlo:mlr6791 similar to adducins; class II aldolase/adducin family protein 2287923 4599198 Noca_2138 Nocardioides sp. JS614 class II aldolase/adducin family protein YP_923334.1 2287183 R 196162 CDS YP_923335.1 119716370 4599199 complement(2287920..2288216) 1 NC_008699.1 hypothetical protein 2288216 4599199 Noca_2139 Nocardioides sp. JS614 hypothetical protein YP_923335.1 2287920 R 196162 CDS YP_923336.1 119716371 4599200 complement(2288310..2289338) 1 NC_008699.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 2289338 4599200 Noca_2140 Nocardioides sp. JS614 ketol-acid reductoisomerase YP_923336.1 2288310 R 196162 CDS YP_923337.1 119716372 4599201 complement(2289576..2290430) 1 NC_008699.1 PFAM: alpha/beta hydrolase fold; KEGG: rha:RHA1_ro04540 4,9-DSHA hydrolase; alpha/beta hydrolase fold protein 2290430 4599201 Noca_2141 Nocardioides sp. JS614 alpha/beta hydrolase fold protein YP_923337.1 2289576 R 196162 CDS YP_923338.1 119716373 4599202 complement(2290521..2291579) 1 NC_008699.1 KEGG: rpb:RPB_1061 protocatechuate 4,5-dioxygenase; hypothetical protein 2291579 4599202 Noca_2142 Nocardioides sp. JS614 hypothetical protein YP_923338.1 2290521 R 196162 CDS YP_923339.1 119716374 4599203 2291785..2292429 1 NC_008699.1 PFAM: regulatory protein, MarR; KEGG: mmc:Mmcs_5446 transcriptional regulator, MarR family; regulatory protein MarR 2292429 4599203 Noca_2143 Nocardioides sp. JS614 regulatory protein MarR YP_923339.1 2291785 D 196162 CDS YP_923340.1 119716375 4599204 complement(2292774..2293619) 1 NC_008699.1 PFAM: amidohydrolase 2; KEGG: rba:RB9860 hypothetical protein; amidohydrolase 2 2293619 4599204 Noca_2144 Nocardioides sp. JS614 amidohydrolase 2 YP_923340.1 2292774 R 196162 CDS YP_923341.1 119716376 4599205 complement(2293636..2294364) 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tth:TTC0600 branched-chain amino acid transport ATP-binding protein livF; ABC transporter-like protein 2294364 4599205 Noca_2145 Nocardioides sp. JS614 ABC transporter-like protein YP_923341.1 2293636 R 196162 CDS YP_923342.1 119716377 4599206 complement(2294361..2296181) 1 NC_008699.1 PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: rpd:RPD_1891 ABC transporter related; ABC transporter-like protein 2296181 4599206 Noca_2146 Nocardioides sp. JS614 ABC transporter-like protein YP_923342.1 2294361 R 196162 CDS YP_923343.1 119716378 4599207 complement(2296178..2297050) 1 NC_008699.1 PFAM: inner-membrane translocator; KEGG: bbr:BB4292 branched-chain amino acid transport system permease; inner-membrane translocator 2297050 4599207 Noca_2147 Nocardioides sp. JS614 inner-membrane translocator YP_923343.1 2296178 R 196162 CDS YP_923344.1 119716379 4599208 complement(2297087..2298259) 1 NC_008699.1 PFAM: Extracellular ligand-binding receptor; KEGG: gsu:GSU1734 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative; extracellular ligand-binding receptor 2298259 4599208 Noca_2148 Nocardioides sp. JS614 extracellular ligand-binding receptor YP_923344.1 2297087 R 196162 CDS YP_923345.1 119716380 4599209 complement(2298450..2299478) 1 NC_008699.1 catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate; 4-hydroxy-2-ketovalerate aldolase 2299478 4599209 Noca_2149 Nocardioides sp. JS614 4-hydroxy-2-ketovalerate aldolase YP_923345.1 2298450 R 196162 CDS YP_923346.1 119716381 4599210 complement(2299475..2300419) 1 NC_008699.1 catalyzes the formation of acetyl-CoA from acetalaldehyde; acetaldehyde dehydrogenase 2300419 4599210 Noca_2150 Nocardioides sp. JS614 acetaldehyde dehydrogenase YP_923346.1 2299475 R 196162 CDS YP_923347.1 119716382 4599211 complement(2300416..2301231) 1 NC_008699.1 PFAM: Hydratase/decarboxylase; KEGG: rha:RHA1_ro08085 2-oxopent-4-enoate hydratase; 4-oxalocrotonate decarboxylase 2301231 4599211 Noca_2151 Nocardioides sp. JS614 4-oxalocrotonate decarboxylase YP_923347.1 2300416 R 196162 CDS YP_923348.1 119716383 4599212 complement(2301294..2302250) 1 NC_008699.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rha:RHA1_ro04549 transcriptional regulator, LysR family; LysR family transcriptional regulator 2302250 4599212 Noca_2152 Nocardioides sp. JS614 LysR family transcriptional regulator YP_923348.1 2301294 R 196162 CDS YP_923349.1 119716384 4599213 2302396..2302779 1 NC_008699.1 PFAM: transposase IS3/IS911 family protein; KEGG: mmc:Mmcs_3190 transposase IS3/IS911; transposase IS3/IS911 family protein 2302779 4599213 Noca_2153 Nocardioides sp. JS614 transposase IS3/IS911 family protein YP_923349.1 2302396 D 196162 CDS YP_923350.1 119716385 4599214 2302776..2303675 1 NC_008699.1 PFAM: Integrase, catalytic region; KEGG: mmc:Mmcs_3191 integrase, catalytic region; integrase catalytic subunit 2303675 4599214 Noca_2154 Nocardioides sp. JS614 integrase catalytic subunit YP_923350.1 2302776 D 196162 CDS YP_923351.1 119716386 4599215 complement(2303931..2305286) 1 NC_008699.1 PFAM: FAD linked oxidase domain protein; KEGG: rha:RHA1_ro03236 probable D-lactate dehydrogenase (cytochrome); D-lactate dehydrogenase 2305286 4599215 Noca_2155 Nocardioides sp. JS614 D-lactate dehydrogenase YP_923351.1 2303931 R 196162 CDS YP_923352.1 119716387 4599216 complement(2305394..2306617) 1 NC_008699.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rha:RHA1_ro02936 probable formyl-CoA transferase; L-carnitine dehydratase/bile acid-inducible protein F 2306617 4599216 Noca_2156 Nocardioides sp. JS614 L-carnitine dehydratase/bile acid-inducible protein F YP_923352.1 2305394 R 196162 CDS YP_923353.1 119716388 4599217 complement(2306614..2307387) 1 NC_008699.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2307387 4599217 Noca_2157 Nocardioides sp. JS614 enoyl-CoA hydratase YP_923353.1 2306614 R 196162 CDS YP_923354.1 119716389 4599218 complement(2307387..2308535) 1 NC_008699.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: nph:NP6182A predicted crotonobetainyl-CoA:carnitine CoA-transferase/alpha-methylacyl-CoA racemase 1; formyl-CoA transferase 2308535 4599218 Noca_2158 Nocardioides sp. JS614 formyl-CoA transferase YP_923354.1 2307387 R 196162 CDS YP_923355.1 119716390 4599219 2308711..2309637 1 NC_008699.1 PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: rpb:RPB_2122 3-hydroxyisobutyrate dehydrogenase; 3-hydroxyisobutyrate dehydrogenase 2309637 4599219 Noca_2159 Nocardioides sp. JS614 3-hydroxyisobutyrate dehydrogenase YP_923355.1 2308711 D 196162 CDS YP_923356.1 119716391 4599220 2309634..2311124 1 NC_008699.1 PFAM: aldehyde dehydrogenase; KEGG: rha:RHA1_ro05333 aldehyde dehydrogenase; betaine-aldehyde dehydrogenase 2311124 4599220 Noca_2160 Nocardioides sp. JS614 betaine-aldehyde dehydrogenase YP_923356.1 2309634 D 196162 CDS YP_923357.1 119716392 4599221 complement(2311697..2312212) 1 NC_008699.1 hypothetical protein 2312212 4599221 Noca_2161 Nocardioides sp. JS614 hypothetical protein YP_923357.1 2311697 R 196162 CDS YP_923358.1 119716393 4599222 complement(2312250..2313428) 1 NC_008699.1 PFAM: cytochrome P450; KEGG: rha:RHA1_ro04669 cytochrome P450 CYP123; cytochrome P450 2313428 4599222 Noca_2162 Nocardioides sp. JS614 cytochrome P450 YP_923358.1 2312250 R 196162 CDS YP_923359.1 119716394 4599223 complement(2313454..2316495) 1 NC_008699.1 PFAM: MMPL domain protein; KEGG: mmc:Mmcs_3114 transport protein; MMPL domain-containing protein 2316495 4599223 Noca_2163 Nocardioides sp. JS614 MMPL domain-containing protein YP_923359.1 2313454 R 196162 CDS YP_923360.1 119716395 4599224 2316611..2317240 1 NC_008699.1 PFAM: regulatory protein, TetR; KEGG: sco:SCO3833 transcriptional regulator; regulatory protein TetR 2317240 4599224 Noca_2164 Nocardioides sp. JS614 regulatory protein TetR YP_923360.1 2316611 D 196162 CDS YP_923361.1 119716396 4599226 2318250..2318822 1 NC_008699.1 PFAM: thioesterase superfamily protein; KEGG: nfa:pnf2350 hypothetical protein; thioesterase superfamily protein 2318822 4599226 Noca_2166 Nocardioides sp. JS614 thioesterase superfamily protein YP_923361.1 2318250 D 196162 CDS YP_923362.1 119716397 4599074 2318890..2319270 1 NC_008699.1 KEGG: mmc:Mmcs_3184 hypothetical protein; hypothetical protein 2319270 4599074 Noca_2167 Nocardioides sp. JS614 hypothetical protein YP_923362.1 2318890 D 196162 CDS YP_923363.1 119716398 4599075 2319267..2320001 1 NC_008699.1 KEGG: mmc:Mmcs_3184 hypothetical protein; hypothetical protein 2320001 4599075 Noca_2168 Nocardioides sp. JS614 hypothetical protein YP_923363.1 2319267 D 196162 CDS YP_923364.1 119716399 4599076 complement(2320036..2321700) 1 NC_008699.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV5831 multidrug-efflux transporter; EmrB/QacA family drug resistance transporter 2321700 4599076 Noca_2169 Nocardioides sp. JS614 EmrB/QacA family drug resistance transporter YP_923364.1 2320036 R 196162 CDS YP_923365.1 119716400 4599077 complement(2321788..2322141) 1 NC_008699.1 hypothetical protein 2322141 4599077 Noca_2170 Nocardioides sp. JS614 hypothetical protein YP_923365.1 2321788 R 196162 CDS YP_923366.1 119716401 4599078 2322463..2322861 1 NC_008699.1 PFAM: regulatory protein, MarR; KEGG: sco:SCO4961 MarR-family transcriptional regulator; regulatory protein MarR 2322861 4599078 Noca_2171 Nocardioides sp. JS614 regulatory protein MarR YP_923366.1 2322463 D 196162 CDS YP_923367.1 119716402 4599079 complement(2324513..2326867) 1 NC_008699.1 PFAM: MMPL domain protein; KEGG: mmc:Mmcs_5142 MmpL; MMPL domain-containing protein 2326867 4599079 Noca_2172 Nocardioides sp. JS614 MMPL domain-containing protein YP_923367.1 2324513 R 196162 CDS YP_923368.1 119716403 4599080 complement(2326903..2327505) 1 NC_008699.1 PFAM: regulatory protein, TetR; KEGG: rha:RHA1_ro04167 possible transcriptional regulator; regulatory protein TetR 2327505 4599080 Noca_2173 Nocardioides sp. JS614 regulatory protein TetR YP_923368.1 2326903 R 196162 CDS YP_923369.1 119716404 4599081 2327779..2328180 1 NC_008699.1 PFAM: regulatory protein, MarR; KEGG: tfu:Tfu_0351 helix-turn-helix, fis-type; regulatory protein MarR 2328180 4599081 Noca_2174 Nocardioides sp. JS614 regulatory protein MarR YP_923369.1 2327779 D 196162 CDS YP_923370.1 119716405 4599082 complement(2329133..2329987) 1 NC_008699.1 KEGG: fal:FRAAL0176 putative membrane transport protein; hypothetical protein 2329987 4599082 Noca_2175 Nocardioides sp. JS614 hypothetical protein YP_923370.1 2329133 R 196162 CDS YP_923371.1 119716406 4599083 2330165..2330542 1 NC_008699.1 PFAM: helix-turn-helix domain protein; KEGG: rha:RHA1_ro11274 possible repressor protein, helix-turn-helix family; helix-turn-helix domain-containing protein 2330542 4599083 Noca_2176 Nocardioides sp. JS614 helix-turn-helix domain-containing protein YP_923371.1 2330165 D 196162 CDS YP_923372.1 119716407 4599084 complement(2330663..2331265) 1 NC_008699.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sma:SAV703 acetyltransferase; N-acetyltransferase GCN5 2331265 4599084 Noca_2177 Nocardioides sp. JS614 N-acetyltransferase GCN5 YP_923372.1 2330663 R 196162 CDS YP_923373.1 119716408 4599085 complement(2331341..2332252) 1 NC_008699.1 PFAM: phage integrase family protein; KEGG: pfo:Pfl_1025 tyrosine recombinase XerD; phage integrase family protein 2332252 4599085 Noca_2178 Nocardioides sp. JS614 phage integrase family protein YP_923373.1 2331341 R 196162 CDS YP_923374.1 119716409 4599086 2332508..2333248 1 NC_008699.1 PFAM: GCN5-related N-acetyltransferase; KEGG: fra:Francci3_1395 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2333248 4599086 Noca_2179 Nocardioides sp. JS614 N-acetyltransferase GCN5 YP_923374.1 2332508 D 196162 CDS YP_923375.1 119716410 4599087 complement(2333642..2334109) 1 NC_008699.1 KEGG: sco:SCO0502 hypothetical protein; hypothetical protein 2334109 4599087 Noca_2180 Nocardioides sp. JS614 hypothetical protein YP_923375.1 2333642 R 196162 CDS YP_923376.1 119716411 4599088 complement(2334239..2335093) 1 NC_008699.1 PFAM: NmrA family protein; KEGG: lxx:Lxx16700 hypothetical protein; NmrA family protein 2335093 4599088 Noca_2181 Nocardioides sp. JS614 NmrA family protein YP_923376.1 2334239 R 196162 CDS YP_923377.1 119716412 4599089 complement(2335116..2335757) 1 NC_008699.1 PFAM: NmrA family protein; KEGG: ret:RHE_PC00048 hypothetical protein; NmrA family protein 2335757 4599089 Noca_2182 Nocardioides sp. JS614 NmrA family protein YP_923377.1 2335116 R 196162 CDS YP_923378.1 119716413 4599090 complement(2335788..2336723) 1 NC_008699.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: fra:Francci3_4105 alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase 2336723 4599090 Noca_2183 Nocardioides sp. JS614 alcohol dehydrogenase YP_923378.1 2335788 R 196162 CDS YP_923379.1 119716414 4599091 complement(2336779..2337132) 1 NC_008699.1 KEGG: sco:SCO4433 integral membrane protein; integral membrane protein 2337132 4599091 Noca_2184 Nocardioides sp. JS614 integral membrane protein YP_923379.1 2336779 R 196162 CDS YP_923380.1 119716415 4599092 complement(2337178..2338215) 1 NC_008699.1 PFAM: luciferase family protein; KEGG: bld:BLi00644 hypothetical protein; luciferase family protein 2338215 4599092 Noca_2185 Nocardioides sp. JS614 luciferase family protein YP_923380.1 2337178 R 196162 CDS YP_923381.1 119716416 4599093 complement(2338217..2338930) 1 NC_008699.1 PFAM: regulatory protein, TetR; KEGG: fal:FRAAL3510 putative TetR-family transcriptional regulator (partial match); regulatory protein TetR 2338930 4599093 Noca_2186 Nocardioides sp. JS614 regulatory protein TetR YP_923381.1 2338217 R 196162 CDS YP_923382.1 119716417 4599094 2339053..2339835 1 NC_008699.1 KEGG: fal:FRAAL6463 hypothetical protein; hypothetical protein 2339835 4599094 Noca_2187 Nocardioides sp. JS614 hypothetical protein YP_923382.1 2339053 D 196162 CDS YP_923383.1 119716418 4599095 2339832..2340425 1 NC_008699.1 hypothetical protein 2340425 4599095 Noca_2188 Nocardioides sp. JS614 hypothetical protein YP_923383.1 2339832 D 196162 CDS YP_923384.1 119716419 4599096 complement(2340554..2341225) 1 NC_008699.1 PFAM: RelA/SpoT domain protein; KEGG: lxx:Lxx23800 hypothetical protein; RelA/SpoT domain-containing protein 2341225 4599096 Noca_2189 Nocardioides sp. JS614 RelA/SpoT domain-containing protein YP_923384.1 2340554 R 196162 CDS YP_923385.1 119716420 4599098 complement(2342167..2342799) 1 NC_008699.1 PFAM: 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: ret:RHE_PC00048 hypothetical protein; NmrA family protein 2342799 4599098 Noca_2191 Nocardioides sp. JS614 NmrA family protein YP_923385.1 2342167 R 196162 CDS YP_923386.1 119716421 4599099 complement(2342932..2343378) 1 NC_008699.1 KEGG: sco:SCO5075 oxidoreductase; hypothetical protein 2343378 4599099 Noca_2192 Nocardioides sp. JS614 hypothetical protein YP_923386.1 2342932 R 196162 CDS YP_923387.1 119716422 4599100 complement(2343424..2343795) 1 NC_008699.1 PFAM: DoxX family protein; KEGG: nfa:nfa22160 hypothetical protein; DoxX family protein 2343795 4599100 Noca_2193 Nocardioides sp. JS614 DoxX family protein YP_923387.1 2343424 R 196162 CDS YP_923388.1 119716423 4599101 2343927..2344583 1 NC_008699.1 PFAM: regulatory protein, TetR; KEGG: fal:FRAAL3510 putative TetR-family transcriptional regulator (partial match); regulatory protein TetR 2344583 4599101 Noca_2194 Nocardioides sp. JS614 regulatory protein TetR YP_923388.1 2343927 D 196162 CDS YP_923389.1 119716424 4599102 complement(2344926..2345567) 1 NC_008699.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rxy:Rxyl_0122 methyltransferase type 11; phosphatidylethanolamine N-methyltransferase/phosphatidyl-N-methylethanolamine N-methyltransferase 2345567 4599102 Noca_2195 Nocardioides sp. JS614 phosphatidylethanolamine N-methyltransferase/phosphatidyl-N-methylethanolamine N-methyltransferase YP_923389.1 2344926 R 196162 CDS YP_923390.1 119716425 4599103 2345959..2346195 1 NC_008699.1 hypothetical protein 2346195 4599103 Noca_2196 Nocardioides sp. JS614 hypothetical protein YP_923390.1 2345959 D 196162 CDS YP_923391.1 119716426 4599104 complement(2346293..2347246) 1 NC_008699.1 PFAM: alkylmercury lyase; KEGG: nfa:pnf2590 putative alkylmercury lyase; alkylmercury lyase 2347246 4599104 Noca_2197 Nocardioides sp. JS614 alkylmercury lyase YP_923391.1 2346293 R 196162 CDS YP_923392.1 119716427 4599105 complement(2347243..2347650) 1 NC_008699.1 PFAM: regulatory protein, MerR; KEGG: nfa:pnf2580 putative transcriptional regulator; MerR family transcriptional regulator 2347650 4599105 Noca_2198 Nocardioides sp. JS614 MerR family transcriptional regulator YP_923392.1 2347243 R 196162 CDS YP_923393.1 119716428 4599106 complement(2348173..2349003) 1 NC_008699.1 PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: tfu:Tfu_2703 putative cytochrome c biogenesis membrane protein; cytochrome c biogenesis protein, transmembrane region 2349003 4599106 Noca_2199 Nocardioides sp. JS614 cytochrome c biogenesis protein, transmembrane region YP_923393.1 2348173 R 196162 CDS YP_923394.1 119716429 4599107 complement(2349101..2350084) 1 NC_008699.1 PFAM: cytochrome c assembly protein; KEGG: fra:Francci3_0513 cytochrome c assembly protein; cytochrome c assembly protein 2350084 4599107 Noca_2200 Nocardioides sp. JS614 cytochrome c assembly protein YP_923394.1 2349101 R 196162 CDS YP_923395.1 119716430 4599108 complement(2350081..2351679) 1 NC_008699.1 PFAM: ResB family protein; KEGG: sma:SAV4800 putative cytochrome c biogenesis membrane protein; ResB family protein 2351679 4599108 Noca_2201 Nocardioides sp. JS614 ResB family protein YP_923395.1 2350081 R 196162 CDS YP_923396.1 119716431 4599109 complement(2351676..2352260) 1 NC_008699.1 PFAM: Redoxin domain protein; KEGG: tfu:Tfu_2704 hypothetical protein; redoxin domain-containing protein 2352260 4599109 Noca_2202 Nocardioides sp. JS614 redoxin domain-containing protein YP_923396.1 2351676 R 196162 CDS YP_923397.1 119716432 4599110 2352387..2352998 1 NC_008699.1 PFAM: Redoxin domain protein; Thioredoxin domain; KEGG: ttj:TTHA1728 cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE; redoxin domain-containing protein 2352998 4599110 Noca_2203 Nocardioides sp. JS614 redoxin domain-containing protein YP_923397.1 2352387 D 196162 CDS YP_923398.1 119716433 4599111 2353002..2354660 1 NC_008699.1 TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: tfu:Tfu_1762 apolipoprotein N-acyltransferase; apolipoprotein N-acyltransferase 2354660 4599111 Noca_2204 Nocardioides sp. JS614 apolipoprotein N-acyltransferase YP_923398.1 2353002 D 196162 CDS YP_923399.1 119716434 4599112 complement(2354750..2355346) 1 NC_008699.1 PFAM: cadmium resistance transporter; KEGG: nfa:pnf1360 putative transporter; cadmium resistance transporter 2355346 4599112 Noca_2205 Nocardioides sp. JS614 cadmium resistance transporter YP_923399.1 2354750 R 196162 CDS YP_923400.1 119716435 4599113 complement(2355476..2355997) 1 NC_008699.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 2355997 4599113 Noca_2206 Nocardioides sp. JS614 lipoprotein signal peptidase YP_923400.1 2355476 R 196162 CDS YP_923401.1 119716436 4598705 complement(2356042..2358012) 1 NC_008699.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: nfa:pnf1330 putative cation-transporting ATPase; heavy metal translocating P-type ATPase 2358012 4598705 Noca_2207 Nocardioides sp. JS614 heavy metal translocating P-type ATPase YP_923401.1 2356042 R 196162 CDS YP_923402.1 119716437 4598706 complement(2358009..2358323) 1 NC_008699.1 KEGG: nfa:pnf1320 putative transcriptional regulator; putative transcriptional regulator 2358323 4598706 Noca_2208 Nocardioides sp. JS614 putative transcriptional regulator YP_923402.1 2358009 R 196162 CDS YP_923403.1 119716438 4598707 complement(2358320..2358712) 1 NC_008699.1 PFAM: regulatory protein, ArsR; KEGG: nfa:pnf1320 putative transcriptional regulator; ArsR family transcriptional regulator 2358712 4598707 Noca_2209 Nocardioides sp. JS614 ArsR family transcriptional regulator YP_923403.1 2358320 R 196162 CDS YP_923404.1 119716439 4598708 2358811..2359422 1 NC_008699.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: shm:Shewmr7_2345 methyltransferase type 11; type 11 methyltransferase 2359422 4598708 Noca_2210 Nocardioides sp. JS614 type 11 methyltransferase YP_923404.1 2358811 D 196162 CDS YP_923405.1 119716440 4598709 2359488..2360426 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV4541 putative ABC transporter ATP-binding protein; ABC transporter-like protein 2360426 4598709 Noca_2211 Nocardioides sp. JS614 ABC transporter-like protein YP_923405.1 2359488 D 196162 CDS YP_923406.1 119716441 4598710 2360423..2362009 1 NC_008699.1 KEGG: rha:RHA1_ro02954 possible ABC antibiotics transporter; putative ABC antibiotics transporter 2362009 4598710 Noca_2212 Nocardioides sp. JS614 putative ABC antibiotics transporter YP_923406.1 2360423 D 196162 CDS YP_923407.1 119716442 4598711 2362133..2362858 1 NC_008699.1 PFAM: protein of unknown function DUF305; KEGG: ana:all7633 hypothetical protein; hypothetical protein 2362858 4598711 Noca_2213 Nocardioides sp. JS614 hypothetical protein YP_923407.1 2362133 D 196162 CDS YP_923408.1 119716443 4598712 complement(2363221..2363721) 1 NC_008699.1 KEGG: pfl:PFL_2399 hypothetical protein; hypothetical protein 2363721 4598712 Noca_2214 Nocardioides sp. JS614 hypothetical protein YP_923408.1 2363221 R 196162 CDS YP_923409.1 119716444 4598713 2363803..2364138 1 NC_008699.1 PFAM: regulatory protein, ArsR; KEGG: nfa:nfa26300 putative transcriptional regulator; ArsR family transcriptional regulator 2364138 4598713 Noca_2215 Nocardioides sp. JS614 ArsR family transcriptional regulator YP_923409.1 2363803 D 196162 CDS YP_923410.1 119716445 4598714 2364138..2365055 1 NC_008699.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: nfa:nfa52310 putative cation transporter; cation diffusion facilitator family transporter 2365055 4598714 Noca_2216 Nocardioides sp. JS614 cation diffusion facilitator family transporter YP_923410.1 2364138 D 196162 CDS YP_923411.1 119716446 4598716 2365774..2366397 1 NC_008699.1 hypothetical protein 2366397 4598716 Noca_2218 Nocardioides sp. JS614 hypothetical protein YP_923411.1 2365774 D 196162 CDS YP_923412.1 119716447 4598717 2366740..2367180 1 NC_008699.1 PFAM: helix-turn-helix domain protein; KEGG: rha:RHA1_ro08679 possible repressor protein; helix-turn-helix domain-containing protein 2367180 4598717 Noca_2219 Nocardioides sp. JS614 helix-turn-helix domain-containing protein YP_923412.1 2366740 D 196162 CDS YP_923413.1 119716448 4598718 2367513..2368187 1 NC_008699.1 PFAM: SAF domain; KEGG: rha:RHA1_ro10043 hypothetical protein; SAF domain-containing protein 2368187 4598718 Noca_2220 Nocardioides sp. JS614 SAF domain-containing protein YP_923413.1 2367513 D 196162 CDS YP_923414.1 119716449 4598719 2368191..2369030 1 NC_008699.1 KEGG: sma:SAV184 hypothetical protein; hypothetical protein 2369030 4598719 Noca_2221 Nocardioides sp. JS614 hypothetical protein YP_923414.1 2368191 D 196162 CDS YP_923415.1 119716450 4598720 2369027..2370706 1 NC_008699.1 PFAM: type II secretion system protein E; KEGG: rha:RHA1_ro10045 possible type II/IV secretion system protein; type II secretion system protein E 2370706 4598720 Noca_2222 Nocardioides sp. JS614 type II secretion system protein E YP_923415.1 2369027 D 196162 CDS YP_923416.1 119716451 4598721 2370703..2371635 1 NC_008699.1 PFAM: type II secretion system protein; KEGG: sma:SAV186 integral membrane protein; type II secretion system protein 2371635 4598721 Noca_2223 Nocardioides sp. JS614 type II secretion system protein YP_923416.1 2370703 D 196162 CDS YP_923417.1 119716452 4598722 2371632..2372543 1 NC_008699.1 PFAM: type II secretion system protein; KEGG: rha:RHA1_ro10047 hypothetical protein; type II secretion system protein 2372543 4598722 Noca_2224 Nocardioides sp. JS614 type II secretion system protein YP_923417.1 2371632 D 196162 CDS YP_923418.1 119716453 4598723 2372618..2372821 1 NC_008699.1 hypothetical protein 2372821 4598723 Noca_2225 Nocardioides sp. JS614 hypothetical protein YP_923418.1 2372618 D 196162 CDS YP_923419.1 119716454 4598724 2372828..2373223 1 NC_008699.1 PFAM: TadE family protein; KEGG: sco:SCP1.173 hypothetical protein; TadE family protein 2373223 4598724 Noca_2226 Nocardioides sp. JS614 TadE family protein YP_923419.1 2372828 D 196162 CDS YP_923420.1 119716455 4598725 2373220..2373678 1 NC_008699.1 PFAM: TadE family protein; KEGG: sma:SAV190 hypothetical protein; TadE family protein 2373678 4598725 Noca_2227 Nocardioides sp. JS614 TadE family protein YP_923420.1 2373220 D 196162 CDS YP_923421.1 119716456 4598726 2373675..2374127 1 NC_008699.1 PFAM: TadE family protein; KEGG: sco:SCP1.175 hypothetical protein; TadE family protein 2374127 4598726 Noca_2228 Nocardioides sp. JS614 TadE family protein YP_923421.1 2373675 D 196162 CDS YP_923422.1 119716457 4598727 2374124..2377384 1 NC_008699.1 PFAM: Peptidoglycan-binding LysM; KEGG: sco:SCP1.176 putative large membrane protein; peptidoglycan-binding LysM 2377384 4598727 Noca_2229 Nocardioides sp. JS614 peptidoglycan-binding LysM YP_923422.1 2374124 D 196162 CDS YP_923423.1 119716458 4598728 2377407..2377682 1 NC_008699.1 hypothetical protein 2377682 4598728 Noca_2230 Nocardioides sp. JS614 hypothetical protein YP_923423.1 2377407 D 196162 CDS YP_923424.1 119716459 4598729 2377679..2378245 1 NC_008699.1 hypothetical protein 2378245 4598729 Noca_2231 Nocardioides sp. JS614 hypothetical protein YP_923424.1 2377679 D 196162 CDS YP_923425.1 119716460 4598730 2378239..2379138 1 NC_008699.1 KEGG: sco:SCP1.166 putative atp/gtp-binding protein; putative atp/GTP-binding protein 2379138 4598730 Noca_2232 Nocardioides sp. JS614 putative atp/GTP-binding protein YP_923425.1 2378239 D 196162 CDS YP_923426.1 119716461 4598731 complement(2379404..2380243) 1 NC_008699.1 hypothetical protein 2380243 4598731 Noca_2233 Nocardioides sp. JS614 hypothetical protein YP_923426.1 2379404 R 196162 CDS YP_923427.1 119716462 4598732 complement(2380740..2381384) 1 NC_008699.1 hypothetical protein 2381384 4598732 Noca_2234 Nocardioides sp. JS614 hypothetical protein YP_923427.1 2380740 R 196162 CDS YP_923428.1 119716463 4598733 complement(2381634..2382968) 1 NC_008699.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: rha:RHA1_ro01400 probable transposase; transposase IS116/IS110/IS902 family protein 2382968 4598733 Noca_2235 Nocardioides sp. JS614 transposase IS116/IS110/IS902 family protein YP_923428.1 2381634 R 196162 CDS YP_923429.1 119716464 4598735 2384514..2385362 1 NC_008699.1 hypothetical protein 2385362 4598735 Noca_2237 Nocardioides sp. JS614 hypothetical protein YP_923429.1 2384514 D 196162 CDS YP_923430.1 119716465 4598736 2385402..2385695 1 NC_008699.1 hypothetical protein 2385695 4598736 Noca_2238 Nocardioides sp. JS614 hypothetical protein YP_923430.1 2385402 D 196162 CDS YP_923431.1 119716466 4598737 2385695..2386561 1 NC_008699.1 hypothetical protein 2386561 4598737 Noca_2239 Nocardioides sp. JS614 hypothetical protein YP_923431.1 2385695 D 196162 CDS YP_923432.1 119716467 4598738 2386561..2387337 1 NC_008699.1 hypothetical protein 2387337 4598738 Noca_2240 Nocardioides sp. JS614 hypothetical protein YP_923432.1 2386561 D 196162 CDS YP_923433.1 119716468 4598739 2387334..2389304 1 NC_008699.1 KEGG: sco:SCO6881 ATP-binding protein; hypothetical protein 2389304 4598739 Noca_2241 Nocardioides sp. JS614 hypothetical protein YP_923433.1 2387334 D 196162 CDS YP_923434.1 119716469 4597788 2389370..2390875 1 NC_008699.1 KEGG: sco:SCO6880 lipoprotein; hypothetical protein 2390875 4597788 Noca_2242 Nocardioides sp. JS614 hypothetical protein YP_923434.1 2389370 D 196162 CDS YP_923435.1 119716470 4597789 2390875..2392413 1 NC_008699.1 KEGG: sco:SCO6878 ATP-binding protein; ATP-binding protein 2392413 4597789 Noca_2243 Nocardioides sp. JS614 ATP-binding protein YP_923435.1 2390875 D 196162 CDS YP_923436.1 119716471 4597790 2392442..2395588 1 NC_008699.1 PFAM: peptidase M23B; KEGG: lxx:Lxx15390 lipoprotein; peptidase M23B 2395588 4597790 Noca_2244 Nocardioides sp. JS614 peptidase M23B YP_923436.1 2392442 D 196162 CDS YP_923437.1 119716472 4597791 2395666..2396268 1 NC_008699.1 hypothetical protein 2396268 4597791 Noca_2245 Nocardioides sp. JS614 hypothetical protein YP_923437.1 2395666 D 196162 CDS YP_923438.1 119716473 4597792 2396507..2398027 1 NC_008699.1 KEGG: fra:Francci3_2361 putative membrane protein; Type IV secretory pathway VirD4 components-like protein 2398027 4597792 Noca_2246 Nocardioides sp. JS614 Type IV secretory pathway VirD4 components-like protein YP_923438.1 2396507 D 196162 CDS YP_923439.1 119716474 4597793 2398024..2398725 1 NC_008699.1 hypothetical protein 2398725 4597793 Noca_2247 Nocardioides sp. JS614 hypothetical protein YP_923439.1 2398024 D 196162 CDS YP_923440.1 119716475 4597794 2398722..2399078 1 NC_008699.1 hypothetical protein 2399078 4597794 Noca_2248 Nocardioides sp. JS614 hypothetical protein YP_923440.1 2398722 D 196162 CDS YP_923441.1 119716476 4597795 2399221..2400024 1 NC_008699.1 PFAM: peptidase M48, Ste24p; KEGG: rfr:Rfer_1411 STE24 endopeptidase; peptidase M48, Ste24p 2400024 4597795 Noca_2249 Nocardioides sp. JS614 peptidase M48, Ste24p YP_923441.1 2399221 D 196162 CDS YP_923442.1 119716477 4597796 complement(2400492..2406422) 1 NC_008699.1 PFAM: TOPRIM domain protein; DNA primase catalytic core, N-terminal domain; SMART: Toprim sub domain protein; KEGG: mmc:Mmcs_1430 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member-like protein; DNA primase catalytic core 2406422 4597796 Noca_2250 Nocardioides sp. JS614 DNA primase catalytic core YP_923442.1 2400492 R 196162 CDS YP_923443.1 119716478 4597797 2406697..2407122 1 NC_008699.1 hypothetical protein 2407122 4597797 Noca_2251 Nocardioides sp. JS614 hypothetical protein YP_923443.1 2406697 D 196162 CDS YP_923444.1 119716479 4597798 2407103..2407630 1 NC_008699.1 hypothetical protein 2407630 4597798 Noca_2252 Nocardioides sp. JS614 hypothetical protein YP_923444.1 2407103 D 196162 CDS YP_923445.1 119716480 4597799 complement(2407692..2407922) 1 NC_008699.1 hypothetical protein 2407922 4597799 Noca_2253 Nocardioides sp. JS614 hypothetical protein YP_923445.1 2407692 R 196162 CDS YP_923446.1 119716481 4597800 complement(2408037..2408288) 1 NC_008699.1 hypothetical protein 2408288 4597800 Noca_2254 Nocardioides sp. JS614 hypothetical protein YP_923446.1 2408037 R 196162 CDS YP_923447.1 119716482 4597801 complement(2408285..2408581) 1 NC_008699.1 hypothetical protein 2408581 4597801 Noca_2255 Nocardioides sp. JS614 hypothetical protein YP_923447.1 2408285 R 196162 CDS YP_923448.1 119716483 4597802 complement(2408578..2408817) 1 NC_008699.1 hypothetical protein 2408817 4597802 Noca_2256 Nocardioides sp. JS614 hypothetical protein YP_923448.1 2408578 R 196162 CDS YP_923449.1 119716484 4597803 complement(2408814..2409110) 1 NC_008699.1 hypothetical protein 2409110 4597803 Noca_2257 Nocardioides sp. JS614 hypothetical protein YP_923449.1 2408814 R 196162 CDS YP_923450.1 119716485 4597804 complement(2409187..2410191) 1 NC_008699.1 KEGG: sco:SCP1.352 hypothetical protein; hypothetical protein 2410191 4597804 Noca_2258 Nocardioides sp. JS614 hypothetical protein YP_923450.1 2409187 R 196162 CDS YP_923451.1 119716486 4597805 complement(2410307..2411887) 1 NC_008699.1 PFAM: ParB domain protein nuclease; KEGG: rha:RHA1_ro03182 possible chromosome partitioning protein-like protein; nuclease 2411887 4597805 Noca_2259 Nocardioides sp. JS614 nuclease YP_923451.1 2410307 R 196162 CDS YP_923452.1 119716487 4597806 2412199..2412654 1 NC_008699.1 hypothetical protein 2412654 4597806 Noca_2260 Nocardioides sp. JS614 hypothetical protein YP_923452.1 2412199 D 196162 CDS YP_923453.1 119716488 4597807 2412840..2413304 1 NC_008699.1 hypothetical protein 2413304 4597807 Noca_2261 Nocardioides sp. JS614 hypothetical protein YP_923453.1 2412840 D 196162 CDS YP_923454.1 119716489 4597808 2413381..2413770 1 NC_008699.1 PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: mle:ML2684 single strand binding protein; single-strand binding protein/primosomal replication protein n 2413770 4597808 Noca_2262 Nocardioides sp. JS614 single-strand binding protein/primosomal replication protein n YP_923454.1 2413381 D 196162 CDS YP_923455.1 119716490 4597809 complement(2414144..2414776) 1 NC_008699.1 hypothetical protein 2414776 4597809 Noca_2263 Nocardioides sp. JS614 hypothetical protein YP_923455.1 2414144 R 196162 CDS YP_923456.1 119716491 4597810 complement(2414985..2417378) 1 NC_008699.1 PFAM: phage integrase family protein; KEGG: rha:RHA1_ro10276 possible DNA integrase/recombinase; phage integrase family protein 2417378 4597810 Noca_2264 Nocardioides sp. JS614 phage integrase family protein YP_923456.1 2414985 R 196162 CDS YP_923457.1 119716492 4597811 complement(2417387..2418622) 1 NC_008699.1 PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: fra:Francci3_3532 phage integrase; phage integrase family protein 2418622 4597811 Noca_2265 Nocardioides sp. JS614 phage integrase family protein YP_923457.1 2417387 R 196162 CDS YP_923458.1 119716493 4597812 2418722..2419663 1 NC_008699.1 KEGG: tfu:Tfu_2217 hypothetical protein; hypothetical protein 2419663 4597812 Noca_2266 Nocardioides sp. JS614 hypothetical protein YP_923458.1 2418722 D 196162 CDS YP_923459.1 119716494 4597813 2419678..2419842 1 NC_008699.1 hypothetical protein 2419842 4597813 Noca_2267 Nocardioides sp. JS614 hypothetical protein YP_923459.1 2419678 D 196162 CDS YP_923460.1 119716495 4597814 2419839..2420888 1 NC_008699.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: sma:SAV2631 putative DNA processing Smf-family protein; DNA protecting protein DprA 2420888 4597814 Noca_2268 Nocardioides sp. JS614 DNA protecting protein DprA YP_923460.1 2419839 D 196162 CDS YP_923461.1 119716496 4597815 complement(2421131..2421400) 1 NC_008699.1 hypothetical protein 2421400 4597815 Noca_2269 Nocardioides sp. JS614 hypothetical protein YP_923461.1 2421131 R 196162 CDS YP_923462.1 119716497 4597816 complement(2421397..2421699) 1 NC_008699.1 hypothetical protein 2421699 4597816 Noca_2270 Nocardioides sp. JS614 hypothetical protein YP_923462.1 2421397 R 196162 CDS YP_923463.1 119716498 4597817 2421762..2422718 1 NC_008699.1 PFAM: ATP dependent DNA ligase; KEGG: sma:SAP1p90 putative ATP-dependint DNA ligase; ATP dependent DNA ligase 2422718 4597817 Noca_2271 Nocardioides sp. JS614 ATP dependent DNA ligase YP_923463.1 2421762 D 196162 CDS YP_923464.1 119716499 4597818 complement(2422685..2422954) 1 NC_008699.1 hypothetical protein 2422954 4597818 Noca_2272 Nocardioides sp. JS614 hypothetical protein YP_923464.1 2422685 R 196162 CDS YP_923465.1 119716500 4597819 2423399..2424178 1 NC_008699.1 hypothetical protein 2424178 4597819 Noca_2273 Nocardioides sp. JS614 hypothetical protein YP_923465.1 2423399 D 196162 CDS YP_923466.1 119716501 4597820 2424175..2424861 1 NC_008699.1 hypothetical protein 2424861 4597820 Noca_2274 Nocardioides sp. JS614 hypothetical protein YP_923466.1 2424175 D 196162 CDS YP_923467.1 119716502 4597821 2425190..2425639 1 NC_008699.1 hypothetical protein 2425639 4597821 Noca_2275 Nocardioides sp. JS614 hypothetical protein YP_923467.1 2425190 D 196162 CDS YP_923468.1 119716503 4597822 2425729..2426367 1 NC_008699.1 KEGG: sma:SAV5827 secreted protein; secreted protein 2426367 4597822 Noca_2276 Nocardioides sp. JS614 secreted protein YP_923468.1 2425729 D 196162 CDS YP_923469.1 119716504 4597823 complement(2426480..2426695) 1 NC_008699.1 hypothetical protein 2426695 4597823 Noca_2277 Nocardioides sp. JS614 hypothetical protein YP_923469.1 2426480 R 196162 CDS YP_923470.1 119716505 4597824 complement(2426863..2428284) 1 NC_008699.1 PFAM: sigma-70 region 4 domain protein; KEGG: sme:SMc03873 putative RNA polymerase sigma factor protein; sigma-70 region 4 domain-containing protein 2428284 4597824 Noca_2278 Nocardioides sp. JS614 sigma-70 region 4 domain-containing protein YP_923470.1 2426863 R 196162 CDS YP_923471.1 119716506 4597825 complement(2428320..2428898) 1 NC_008699.1 hypothetical protein 2428898 4597825 Noca_2279 Nocardioides sp. JS614 hypothetical protein YP_923471.1 2428320 R 196162 CDS YP_923472.1 119716507 4597826 complement(2428895..2430571) 1 NC_008699.1 PFAM: helicase domain protein; type III restriction enzyme, res subunit; restriction endonuclease; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sus:Acid_1698 type III restriction enzyme, res subunit; type III restriction enzyme, res subunit 2430571 4597826 Noca_2280 Nocardioides sp. JS614 type III restriction enzyme, res subunit YP_923472.1 2428895 R 196162 CDS YP_923473.1 119716508 4597827 complement(2430568..2432910) 1 NC_008699.1 KEGG: sus:Acid_1699 zinc finger, RanBP2-type; hypothetical protein 2432910 4597827 Noca_2281 Nocardioides sp. JS614 hypothetical protein YP_923473.1 2430568 R 196162 CDS YP_923474.1 119716509 4595830 complement(2432927..2433286) 1 NC_008699.1 hypothetical protein 2433286 4595830 Noca_2282 Nocardioides sp. JS614 hypothetical protein YP_923474.1 2432927 R 196162 CDS YP_923475.1 119716510 4595831 complement(2433283..2433744) 1 NC_008699.1 PFAM: DNA mismatch endonuclease vsr; KEGG: hch:HCH_10021 DNA G:T-mismatch repair endonuclease; T/G mismatch-specific endonuclease 2433744 4595831 Noca_2283 Nocardioides sp. JS614 T/G mismatch-specific endonuclease YP_923475.1 2433283 R 196162 CDS YP_923476.1 119716511 4595832 complement(2433741..2434940) 1 NC_008699.1 KEGG: ngo:NGO1209 DNA cytosine methyltransferase M.NgoMIII; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; DNA-cytosine methyltransferase 2434940 4595832 Noca_2284 Nocardioides sp. JS614 DNA-cytosine methyltransferase YP_923476.1 2433741 R 196162 CDS YP_923477.1 119716512 4595833 complement(2435055..2435384) 1 NC_008699.1 hypothetical protein 2435384 4595833 Noca_2285 Nocardioides sp. JS614 hypothetical protein YP_923477.1 2435055 R 196162 CDS YP_923478.1 119716513 4595834 complement(2435571..2437094) 1 NC_008699.1 hypothetical protein 2437094 4595834 Noca_2286 Nocardioides sp. JS614 hypothetical protein YP_923478.1 2435571 R 196162 CDS YP_923479.1 119716514 4595835 complement(2437084..2437449) 1 NC_008699.1 hypothetical protein 2437449 4595835 Noca_2287 Nocardioides sp. JS614 hypothetical protein YP_923479.1 2437084 R 196162 CDS YP_923480.1 119716515 4595836 2437666..2438535 1 NC_008699.1 KEGG: nfa:nfa9160 hypothetical protein; hypothetical protein 2438535 4595836 Noca_2288 Nocardioides sp. JS614 hypothetical protein YP_923480.1 2437666 D 196162 CDS YP_923481.1 119716516 4595837 complement(2439582..2440298) 1 NC_008699.1 hypothetical protein 2440298 4595837 Noca_2289 Nocardioides sp. JS614 hypothetical protein YP_923481.1 2439582 R 196162 CDS YP_923482.1 119716517 4595838 complement(2440583..2441125) 1 NC_008699.1 hypothetical protein 2441125 4595838 Noca_2290 Nocardioides sp. JS614 hypothetical protein YP_923482.1 2440583 R 196162 CDS YP_923483.1 119716518 4595839 complement(2441485..2442834) 1 NC_008699.1 KEGG: lxx:Lxx13850 hypothetical protein; hypothetical protein 2442834 4595839 Noca_2291 Nocardioides sp. JS614 hypothetical protein YP_923483.1 2441485 R 196162 CDS YP_923484.1 119716519 4595840 complement(2442896..2443246) 1 NC_008699.1 hypothetical protein 2443246 4595840 Noca_2292 Nocardioides sp. JS614 hypothetical protein YP_923484.1 2442896 R 196162 CDS YP_923485.1 119716520 4595841 complement(2443413..2444600) 1 NC_008699.1 PFAM: phage integrase family protein; KEGG: sco:SCO5633 traSA:integrase fusion protein; phage integrase family protein 2444600 4595841 Noca_2293 Nocardioides sp. JS614 phage integrase family protein YP_923485.1 2443413 R 196162 CDS YP_923486.1 119716521 4595842 complement(2444706..2444981) 1 NC_008699.1 KEGG: fra:Francci3_3400 excisionase/Xis, DNA-binding; hypothetical protein 2444981 4595842 Noca_2294 Nocardioides sp. JS614 hypothetical protein YP_923486.1 2444706 R 196162 CDS YP_923487.1 119716522 4595843 complement(2445371..2446795) 1 NC_008699.1 KEGG: pac:PPA0671 glutamine synthetase; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp; L-glutamine synthetase 2446795 4595843 Noca_2295 Nocardioides sp. JS614 L-glutamine synthetase YP_923487.1 2445371 R 196162 CDS YP_923488.1 119716523 4595844 2446944..2447396 1 NC_008699.1 PFAM: RDD domain containing protein; KEGG: pac:PPA0672 hypothetical protein; RDD domain-containing protein 2447396 4595844 Noca_2296 Nocardioides sp. JS614 RDD domain-containing protein YP_923488.1 2446944 D 196162 CDS YP_923489.1 119716524 4595845 2447417..2448319 1 NC_008699.1 hypothetical protein 2448319 4595845 Noca_2297 Nocardioides sp. JS614 hypothetical protein YP_923489.1 2447417 D 196162 CDS YP_923490.1 119716525 4595846 complement(2448325..2449041) 1 NC_008699.1 KEGG: pac:PPA0683 hypothetical protein; hypothetical protein 2449041 4595846 Noca_2298 Nocardioides sp. JS614 hypothetical protein YP_923490.1 2448325 R 196162 CDS YP_923491.1 119716526 4595847 complement(2449078..2450028) 1 NC_008699.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 2450028 4595847 Noca_2299 Nocardioides sp. JS614 lipoyl synthase YP_923491.1 2449078 R 196162 CDS YP_923492.1 119716527 4595848 complement(2450068..2450775) 1 NC_008699.1 TIGRFAM: lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; KEGG: rha:RHA1_ro01153 probable lipoyltransferase; lipoate-protein ligase B 2450775 4595848 Noca_2300 Nocardioides sp. JS614 lipoate-protein ligase B YP_923492.1 2450068 R 196162 CDS YP_923493.1 119716528 4595916 2450954..2451346 1 NC_008699.1 hypothetical protein 2451346 4595916 Noca_2301 Nocardioides sp. JS614 hypothetical protein YP_923493.1 2450954 D 196162 CDS YP_923494.1 119716529 4595917 complement(2451292..2452188) 1 NC_008699.1 PFAM: dihydrodipicolinate reductase; NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; KEGG: nfa:nfa16890 putative epimerase; NAD-dependent epimerase/dehydratase 2452188 4595917 Noca_2302 Nocardioides sp. JS614 NAD-dependent epimerase/dehydratase YP_923494.1 2451292 R 196162 CDS YP_923495.1 119716530 4595918 complement(2452196..2453989) 1 NC_008699.1 PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: rha:RHA1_ro01151 probable dihydrolipoyllysine-residue succinyltransferase; 2-oxoglutarate dehydrogenase E2 component 2453989 4595918 Noca_2303 Nocardioides sp. JS614 2-oxoglutarate dehydrogenase E2 component YP_923495.1 2452196 R 196162 CDS YP_923496.1 119716531 4595919 complement(2454025..2455404) 1 NC_008699.1 E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 2455404 4595919 Noca_2304 Nocardioides sp. JS614 dihydrolipoamide dehydrogenase YP_923496.1 2454025 R 196162 CDS YP_923497.1 119716532 4595920 2455471..2455920 1 NC_008699.1 KEGG: mmc:Mmcs_3312 hypothetical protein; hypothetical protein 2455920 4595920 Noca_2305 Nocardioides sp. JS614 hypothetical protein YP_923497.1 2455471 D 196162 CDS YP_923498.1 119716533 4595921 complement(2455931..2457424) 1 NC_008699.1 PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: sco:SCO2179 putative aminopeptidase; leucyl aminopeptidase 2457424 4595921 Noca_2306 Nocardioides sp. JS614 leucyl aminopeptidase YP_923498.1 2455931 R 196162 CDS YP_923499.1 119716534 4595922 2457481..2458596 1 NC_008699.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 2458596 gcvT 4595922 gcvT Nocardioides sp. JS614 glycine cleavage system aminomethyltransferase T YP_923499.1 2457481 D 196162 CDS YP_923500.1 119716535 4595923 2458598..2458858 1 NC_008699.1 KEGG: sco:SCO2172 hypothetical protein; hypothetical protein 2458858 4595923 Noca_2308 Nocardioides sp. JS614 hypothetical protein YP_923500.1 2458598 D 196162 CDS YP_923501.1 119716536 4595924 2458905..2460452 1 NC_008699.1 hypothetical protein 2460452 4595924 Noca_2309 Nocardioides sp. JS614 hypothetical protein YP_923501.1 2458905 D 196162 CDS YP_923502.1 119716537 4595925 2460477..2461298 1 NC_008699.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: pst:PSPTO_2623 phenazine biosynthesis protein, PhzF family; PhzF family phenazine biosynthesis protein 2461298 4595925 Noca_2310 Nocardioides sp. JS614 PhzF family phenazine biosynthesis protein YP_923502.1 2460477 D 196162 CDS YP_923503.1 119716538 4595926 2461315..2462136 1 NC_008699.1 PFAM: thymidylate synthase; KEGG: csa:Csal_2572 thymidylate synthase; thymidylate synthase 2462136 4595926 Noca_2311 Nocardioides sp. JS614 thymidylate synthase YP_923503.1 2461315 D 196162 CDS YP_923504.1 119716539 4595927 2462156..2462638 1 NC_008699.1 PFAM: dihydrofolate reductase region; KEGG: tbd:Tbd_2039 dihydrofolate reductase; dihydrofolate reductase 2462638 4595927 Noca_2312 Nocardioides sp. JS614 dihydrofolate reductase YP_923504.1 2462156 D 196162 CDS YP_923505.1 119716540 4595928 2462625..2463575 1 NC_008699.1 PFAM: luciferase family protein; KEGG: rha:RHA1_ro04019 probable alkanesulfonate monooxygenase; luciferase family protein 2463575 4595928 Noca_2313 Nocardioides sp. JS614 luciferase family protein YP_923505.1 2462625 D 196162 CDS YP_923506.1 119716541 4595929 complement(2463600..2464112) 1 NC_008699.1 KEGG: tfu:Tfu_3023 similar to flavodoxin; flavodoxin-like 2464112 4595929 Noca_2314 Nocardioides sp. JS614 flavodoxin-like YP_923506.1 2463600 R 196162 CDS YP_923507.1 119716542 4595930 2464225..2465121 1 NC_008699.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 2465121 4595930 Noca_2315 Nocardioides sp. JS614 dihydrodipicolinate synthase YP_923507.1 2464225 D 196162 CDS YP_923508.1 119716543 4595931 2465130..2466815 1 NC_008699.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: sco:SCO5745 hypothetical protein; beta-lactamase domain-containing protein 2466815 4595931 Noca_2316 Nocardioides sp. JS614 beta-lactamase domain-containing protein YP_923508.1 2465130 D 196162 CDS YP_923509.1 119716544 4595932 2467281..2469917 1 NC_008699.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: pac:PPA1356 FtsK/SpoIIIE protein; cell division protein FtsK 2469917 4595932 Noca_2317 Nocardioides sp. JS614 cell division protein FtsK YP_923509.1 2467281 D 196162 CDS YP_923510.1 119716545 4595933 2469914..2471611 1 NC_008699.1 KEGG: sma:SAV2509 hypothetical protein; hypothetical protein 2471611 4595933 Noca_2318 Nocardioides sp. JS614 hypothetical protein YP_923510.1 2469914 D 196162 CDS YP_923511.1 119716546 4595934 2471669..2473111 1 NC_008699.1 KEGG: sma:SAV2508 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme YliG; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004-like; SMART: Elongator protein 3/MiaB/NifB; MiaB-like tRNA modifying enzyme YliG 2473111 4595934 Noca_2319 Nocardioides sp. JS614 MiaB-like tRNA modifying enzyme YliG YP_923511.1 2471669 D 196162 CDS YP_923512.1 119716547 4595935 2473146..2473754 1 NC_008699.1 TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: pac:PPA1007 phosphatidylglycerophosphate synthase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2473754 4595935 Noca_2320 Nocardioides sp. JS614 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_923512.1 2473146 D 196162 CDS YP_923513.1 119716548 4595936 2473831..2476026 1 NC_008699.1 PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: cgb:cg0397 probable 5'-nucleotidase precursor; 5'-nucleotidase domain-containing protein 2476026 4595936 Noca_2321 Nocardioides sp. JS614 5'-nucleotidase domain-containing protein YP_923513.1 2473831 D 196162 CDS YP_923514.1 119716549 4595937 2476104..2478893 1 NC_008699.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: cjk:jk1043 putative extracellular nuclease; endonuclease/exonuclease/phosphatase 2478893 4595937 Noca_2322 Nocardioides sp. JS614 endonuclease/exonuclease/phosphatase YP_923514.1 2476104 D 196162 CDS YP_923515.1 119716550 4595938 complement(2478930..2480699) 1 NC_008699.1 PFAM: glycoside hydrolase 15-related; KEGG: lxx:Lxx13300 hypothetical protein; glycoside hydrolase 15-like protein 2480699 4595938 Noca_2323 Nocardioides sp. JS614 glycoside hydrolase 15-like protein YP_923515.1 2478930 R 196162 CDS YP_923516.1 119716551 4595939 2480718..2481224 1 NC_008699.1 PFAM: CinA domain protein; KEGG: fal:FRAAL5732 competence-inducible (CinA-like) protein; competence/damage-inducible protein cinA 2481224 4595939 Noca_2324 Nocardioides sp. JS614 competence/damage-inducible protein cinA YP_923516.1 2480718 D 196162 CDS YP_923517.1 119716552 4595940 2481259..2481528 1 NC_008699.1 PFAM: helix-turn-helix domain protein; KEGG: tfu:Tfu_0798 helix-turn-helix motif; helix-turn-helix domain-containing protein 2481528 4595940 Noca_2325 Nocardioides sp. JS614 helix-turn-helix domain-containing protein YP_923517.1 2481259 D 196162 CDS YP_923518.1 119716553 4595941 2481573..2481827 1 NC_008699.1 hypothetical protein 2481827 4595941 Noca_2326 Nocardioides sp. JS614 hypothetical protein YP_923518.1 2481573 D 196162 CDS YP_923519.1 119716554 4595942 2481827..2482039 1 NC_008699.1 hypothetical protein 2482039 4595942 Noca_2327 Nocardioides sp. JS614 hypothetical protein YP_923519.1 2481827 D 196162 CDS YP_923520.1 119716555 4595943 complement(2482043..2482849) 1 NC_008699.1 PFAM: Formamidopyrimidine-DNA glycolase; KEGG: mpa:MAP3416 probable endonuclease VIII; formamidopyrimidine-DNA glycosylase 2482849 4595943 Noca_2328 Nocardioides sp. JS614 formamidopyrimidine-DNA glycosylase YP_923520.1 2482043 R 196162 CDS YP_923521.1 119716556 4595944 complement(2482842..2487392) 1 NC_008699.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicases-like; KEGG: fra:Francci3_3527 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase 2487392 4595944 Noca_2329 Nocardioides sp. JS614 DEAD/DEAH box helicase YP_923521.1 2482842 R 196162 CDS YP_923522.1 119716557 4595945 complement(2487558..2488073) 1 NC_008699.1 hypothetical protein 2488073 4595945 Noca_2330 Nocardioides sp. JS614 hypothetical protein YP_923522.1 2487558 R 196162 CDS YP_923523.1 119716558 4595946 2488319..2488678 1 NC_008699.1 KEGG: nfa:nfa50720 hypothetical protein; hypothetical protein 2488678 4595946 Noca_2331 Nocardioides sp. JS614 hypothetical protein YP_923523.1 2488319 D 196162 CDS YP_923524.1 119716559 4595947 2488770..2489339 1 NC_008699.1 PFAM: regulatory protein, TetR; KEGG: rha:RHA1_ro06052 possible transcriptional regulator; regulatory protein TetR 2489339 4595947 Noca_2332 Nocardioides sp. JS614 regulatory protein TetR YP_923524.1 2488770 D 196162 CDS YP_923525.1 119716560 4595948 complement(2489563..2490825) 1 NC_008699.1 KEGG: sma:SAV5428 hypothetical protein; hypothetical protein 2490825 4595948 Noca_2333 Nocardioides sp. JS614 hypothetical protein YP_923525.1 2489563 R 196162 CDS YP_923526.1 119716561 4595949 2490886..2491992 1 NC_008699.1 PFAM: protein of unknown function DUF1006; KEGG: mlo:mlr1373 hypothetical protein; hypothetical protein 2491992 4595949 Noca_2334 Nocardioides sp. JS614 hypothetical protein YP_923526.1 2490886 D 196162 CDS YP_923527.1 119716562 4595950 complement(2491989..2492372) 1 NC_008699.1 PFAM: Endoribonuclease L-PSP; KEGG: fra:Francci3_4440 endoribonuclease L-PSP; endoribonuclease L-PSP 2492372 4595950 Noca_2335 Nocardioides sp. JS614 endoribonuclease L-PSP YP_923527.1 2491989 R 196162 CDS YP_923528.1 119716563 4595951 complement(2492399..2492833) 1 NC_008699.1 KEGG: rha:RHA1_ro05054 hypothetical protein; hypothetical protein 2492833 4595951 Noca_2336 Nocardioides sp. JS614 hypothetical protein YP_923528.1 2492399 R 196162 CDS YP_923529.1 119716564 4595952 2492958..2494280 1 NC_008699.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rha:RHA1_ro01206 hypothetical protein; type 12 methyltransferase 2494280 4595952 Noca_2337 Nocardioides sp. JS614 type 12 methyltransferase YP_923529.1 2492958 D 196162 CDS YP_923530.1 119716565 4595953 2494288..2494482 1 NC_008699.1 KEGG: sma:SAV2495 hypothetical protein; hypothetical protein 2494482 4595953 Noca_2338 Nocardioides sp. JS614 hypothetical protein YP_923530.1 2494288 D 196162 CDS YP_923531.1 119716566 4595954 2494487..2495752 1 NC_008699.1 PFAM: major facilitator superfamily MFS_1; KEGG: nfa:nfa33380 putative transporter; major facilitator transporter 2495752 4595954 Noca_2339 Nocardioides sp. JS614 major facilitator transporter YP_923531.1 2494487 D 196162 CDS YP_923532.1 119716567 4595955 2495749..2496543 1 NC_008699.1 KEGG: rha:RHA1_ro04261 probable S-methyl-5-thioadenosine phosphorylase; TIGRFAM: methylthioadenosine phosphorylase; PFAM: purine phosphorylase, family 2; methylthioadenosine phosphorylase 2496543 4595955 Noca_2340 Nocardioides sp. JS614 methylthioadenosine phosphorylase YP_923532.1 2495749 D 196162 CDS YP_923533.1 119716568 4595956 2496738..2497790 1 NC_008699.1 KEGG: fra:Francci3_3525 RecA protein; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase; recA protein 2497790 4595956 Noca_2341 Nocardioides sp. JS614 recA protein YP_923533.1 2496738 D 196162 CDS YP_923534.1 119716569 4595957 2497774..2498382 1 NC_008699.1 PFAM: regulatory protein RecX; KEGG: sma:SAV2491 putative RecX protein; regulatory protein RecX 2498382 4595957 Noca_2342 Nocardioides sp. JS614 regulatory protein RecX YP_923534.1 2497774 D 196162 CDS YP_923535.1 119716570 4595958 2498372..2498863 1 NC_008699.1 PFAM: phosphoribosyltransferase; KEGG: cgb:cg1659 purine phosphoribosyltransferase; phosphoribosyltransferase 2498863 4595958 Noca_2343 Nocardioides sp. JS614 phosphoribosyltransferase YP_923535.1 2498372 D 196162 CDS YP_923536.1 119716571 4595959 2498860..2499564 1 NC_008699.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sth:STH2617 aminoglycoside 6'-N-acetyltransferase; N-acetyltransferase GCN5 2499564 4595959 Noca_2344 Nocardioides sp. JS614 N-acetyltransferase GCN5 YP_923536.1 2498860 D 196162 CDS YP_923537.1 119716572 4595960 2499572..2500423 1 NC_008699.1 PFAM: protein of unknown function DUF344; KEGG: mmc:Mmcs_0639 protein of unknown function DUF344; hypothetical protein 2500423 4595960 Noca_2345 Nocardioides sp. JS614 hypothetical protein YP_923537.1 2499572 D 196162 CDS YP_923538.1 119716573 4595961 2500420..2501199 1 NC_008699.1 KEGG: rxy:Rxyl_2213 hypothetical protein; hypothetical protein 2501199 4595961 Noca_2346 Nocardioides sp. JS614 hypothetical protein YP_923538.1 2500420 D 196162 CDS YP_923539.1 119716574 4595962 2501196..2501588 1 NC_008699.1 KEGG: sco:SCO1348 hypothetical protein; hypothetical protein 2501588 4595962 Noca_2347 Nocardioides sp. JS614 hypothetical protein YP_923539.1 2501196 D 196162 CDS YP_923540.1 119716575 4595963 complement(2501590..2502333) 1 NC_008699.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: sco:SCO6093 secreted protein; cobalamin (vitamin B12) biosynthesis CbiX protein 2502333 4595963 Noca_2348 Nocardioides sp. JS614 cobalamin (vitamin B12) biosynthesis CbiX protein YP_923540.1 2501590 R 196162 CDS YP_923541.1 119716576 4595964 complement(2502437..2503183) 1 NC_008699.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase 2503183 4595964 Noca_2349 Nocardioides sp. JS614 phosphoadenosine phosphosulfate reductase YP_923541.1 2502437 R 196162 CDS YP_923542.1 119716577 4595965 complement(2503180..2503377) 1 NC_008699.1 KEGG: sma:SAV2128 hypothetical protein; hypothetical protein 2503377 4595965 Noca_2350 Nocardioides sp. JS614 hypothetical protein YP_923542.1 2503180 R 196162 CDS YP_923543.1 119716578 4595966 complement(2503374..2505095) 1 NC_008699.1 PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: sco:SCO6102 putative nitrite/sulphite reductase; ferredoxin--nitrite reductase 2505095 4595966 Noca_2351 Nocardioides sp. JS614 ferredoxin--nitrite reductase YP_923543.1 2503374 R 196162 CDS YP_923544.1 119716579 4595967 2505447..2506895 1 NC_008699.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 2506895 glyA 4595967 glyA Nocardioides sp. JS614 serine hydroxymethyltransferase YP_923544.1 2505447 D 196162 CDS YP_923545.1 119716580 4595968 complement(2506913..2508586) 1 NC_008699.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: sma:SAV2123 putative acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2508586 4595968 Noca_2353 Nocardioides sp. JS614 acyl-CoA dehydrogenase domain-containing protein YP_923545.1 2506913 R 196162 CDS YP_923546.1 119716581 4595969 2508604..2509587 1 NC_008699.1 PFAM: ribonuclease BN; KEGG: sma:SAV2122 integral membrane protein, ribonuclease BN-like family; ribonuclease BN 2509587 4595969 Noca_2354 Nocardioides sp. JS614 ribonuclease BN YP_923546.1 2508604 D 196162 CDS YP_923547.1 119716582 4595970 2509598..2510698 1 NC_008699.1 PFAM: TrkA-N domain protein; Ion transport 2 domain protein,; KEGG: pac:PPA1165 ion channel membrane protein; TrkA domain-containing protein 2510698 4595970 Noca_2355 Nocardioides sp. JS614 TrkA domain-containing protein YP_923547.1 2509598 D 196162 CDS YP_923548.1 119716583 4595971 2510784..2512790 1 NC_008699.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: dra:DR2419 sensory box sensor histidine kinase; PAS sensor protein 2512790 4595971 Noca_2356 Nocardioides sp. JS614 PAS sensor protein YP_923548.1 2510784 D 196162 CDS YP_923549.1 119716584 4595972 2513242..2513541 1 NC_008699.1 hypothetical protein 2513541 4595972 Noca_2357 Nocardioides sp. JS614 hypothetical protein YP_923549.1 2513242 D 196162 CDS YP_923550.1 119716585 4595973 complement(2513583..2515217) 1 NC_008699.1 unknown function; putative glutamate synthase (NADPH) small subunit 2515217 4595973 Noca_2358 Nocardioides sp. JS614 putative glutamate synthase (NADPH) small subunit YP_923550.1 2513583 R 196162 CDS YP_923551.1 119716586 4595974 complement(2515219..2516223) 1 NC_008699.1 PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; KEGG: rfr:Rfer_2185 thiamine pyrophosphate enzyme-like TPP-binding; pyruvate ferredoxin oxidoreductase subunit beta 2516223 4595974 Noca_2359 Nocardioides sp. JS614 pyruvate ferredoxin oxidoreductase subunit beta YP_923551.1 2515219 R 196162 CDS YP_923552.1 119716587 4595975 complement(2516220..2517425) 1 NC_008699.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: rfr:Rfer_2186 pyruvate flavodoxin/ferredoxin oxidoreductase-like; pyruvate ferredoxin oxidoreductase subunit alpha 2517425 4595975 Noca_2360 Nocardioides sp. JS614 pyruvate ferredoxin oxidoreductase subunit alpha YP_923552.1 2516220 R 196162 CDS YP_923553.1 119716588 4595976 complement(2517418..2517990) 1 NC_008699.1 TIGRFAM: pyruvate/ketoisovalerate oxidoreductase, gamma subunit; PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: rfr:Rfer_2187 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate; pyruvate ferredoxin oxidoreductase subunit gamma 2517990 4595976 Noca_2361 Nocardioides sp. JS614 pyruvate ferredoxin oxidoreductase subunit gamma YP_923553.1 2517418 R 196162 CDS YP_923554.1 119716589 4595977 2518163..2518804 1 NC_008699.1 KEGG: rha:RHA1_ro08278 hypothetical protein; hypothetical protein 2518804 4595977 Noca_2362 Nocardioides sp. JS614 hypothetical protein YP_923554.1 2518163 D 196162 CDS YP_923555.1 119716590 4595978 complement(2518792..2519856) 1 NC_008699.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: mmc:Mmcs_3405 alcohol dehydrogenase GroES-like protein; alcohol dehydrogenase 2519856 4595978 Noca_2363 Nocardioides sp. JS614 alcohol dehydrogenase YP_923555.1 2518792 R 196162 CDS YP_923556.1 119716591 4595979 2520113..2520457 1 NC_008699.1 PFAM: helix-turn-helix domain protein; KEGG: plu:plu2127 hypothetical protein; XRE family transcriptional regulator 2520457 4595979 Noca_2364 Nocardioides sp. JS614 XRE family transcriptional regulator YP_923556.1 2520113 D 196162 CDS YP_923557.1 119716592 4595980 2520447..2521682 1 NC_008699.1 PFAM: HipA domain protein; KEGG: noc:Noca_2931 hypothetical protein; HipA domain-containing protein 2521682 4595980 Noca_2365 Nocardioides sp. JS614 HipA domain-containing protein YP_923557.1 2520447 D 196162 CDS YP_923558.1 119716593 4595981 complement(2521860..2523098) 1 NC_008699.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: rha:RHA1_ro01400 probable transposase; transposase IS116/IS110/IS902 family protein 2523098 4595981 Noca_2366 Nocardioides sp. JS614 transposase IS116/IS110/IS902 family protein YP_923558.1 2521860 R 196162 CDS YP_923559.1 119716594 4595985 2523835..2524659 1 NC_008699.1 PFAM: aminotransferase, class IV; KEGG: sco:SCO1546 putative aminotransferase; class IV aminotransferase 2524659 4595985 Noca_2367 Nocardioides sp. JS614 class IV aminotransferase YP_923559.1 2523835 D 196162 CDS YP_923560.1 119716595 4595986 complement(2524645..2525001) 1 NC_008699.1 PFAM: sporulation and cell division protein SsgA; KEGG: fra:Francci3_1359 sporulation and cell division protein SsgA; sporulation and cell division protein SsgA 2525001 4595986 Noca_2368 Nocardioides sp. JS614 sporulation and cell division protein SsgA YP_923560.1 2524645 R 196162 CDS YP_923561.1 119716596 4599469 complement(2525401..2525676) 1 NC_008699.1 hypothetical protein 2525676 4599469 Noca_2369 Nocardioides sp. JS614 hypothetical protein YP_923561.1 2525401 R 196162 CDS YP_923562.1 119716597 4599470 2525866..2527872 1 NC_008699.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 2527872 thrS 4599470 thrS Nocardioides sp. JS614 threonyl-tRNA synthetase YP_923562.1 2525866 D 196162 CDS YP_923563.1 119716598 4599471 complement(2527883..2528368) 1 NC_008699.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ccr:CC0816 acetyltransferase, GNAT family; N-acetyltransferase GCN5 2528368 4599471 Noca_2371 Nocardioides sp. JS614 N-acetyltransferase GCN5 YP_923563.1 2527883 R 196162 CDS YP_923564.1 119716599 4599472 2528392..2528916 1 NC_008699.1 PFAM: histidine triad (HIT) protein; KEGG: nfa:nfa37110 hypothetical protein; histidine triad (HIT) protein 2528916 4599472 Noca_2372 Nocardioides sp. JS614 histidine triad (HIT) protein YP_923564.1 2528392 D 196162 CDS YP_923565.1 119716600 4599473 2528913..2529692 1 NC_008699.1 PFAM: inositol monophosphatase; KEGG: cef:CE0810 hypothetical protein; inositol monophosphatase 2529692 4599473 Noca_2373 Nocardioides sp. JS614 inositol monophosphatase YP_923565.1 2528913 D 196162 CDS YP_923566.1 119716601 4599474 2529785..2530405 1 NC_008699.1 KEGG: rha:RHA1_ro07061 hypothetical protein; hypothetical protein 2530405 4599474 Noca_2374 Nocardioides sp. JS614 hypothetical protein YP_923566.1 2529785 D 196162 CDS YP_923567.1 119716602 4599475 complement(2530430..2531593) 1 NC_008699.1 catalyzes the interconversion of D-xylose to D-xylulose; xylose isomerase 2531593 4599475 Noca_2375 Nocardioides sp. JS614 xylose isomerase YP_923567.1 2530430 R 196162 CDS YP_923568.1 119716603 4599476 2532004..2533134 1 NC_008699.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sma:SAV2247 putative periplasmic solute-binding protein; periplasmic binding protein/LacI transcriptional regulator 2533134 4599476 Noca_2376 Nocardioides sp. JS614 periplasmic binding protein/LacI transcriptional regulator YP_923568.1 2532004 D 196162 CDS YP_923569.1 119716604 4599477 2533226..2533984 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO6010 probable ABC-transport system ATP binding protein; ABC transporter-like protein 2533984 4599477 Noca_2377 Nocardioides sp. JS614 ABC transporter-like protein YP_923569.1 2533226 D 196162 CDS YP_923570.1 119716605 4599478 2533981..2535240 1 NC_008699.1 PFAM: inner-membrane translocator; KEGG: tfu:Tfu_1920 putative ABC transporter transmembrane transport protein; inner-membrane translocator 2535240 4599478 Noca_2378 Nocardioides sp. JS614 inner-membrane translocator YP_923570.1 2533981 D 196162 CDS YP_923571.1 119716606 4599479 2535246..2536433 1 NC_008699.1 PFAM: ROK family protein; KEGG: sma:SAV7180 xylose repressor, ROK-family transcriptional regulator; ROK family protein 2536433 4599479 Noca_2379 Nocardioides sp. JS614 ROK family protein YP_923571.1 2535246 D 196162 CDS YP_923572.1 119716607 4599480 2536464..2537084 1 NC_008699.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: sma:SAV6826 putative membrane transferase; CDP-diacylglycerol inositol 3-phosphatidyltransferase 2537084 4599480 Noca_2380 Nocardioides sp. JS614 CDP-diacylglycerol inositol 3-phosphatidyltransferase YP_923572.1 2536464 D 196162 CDS YP_923573.1 119716608 4599481 2537088..2538017 1 NC_008699.1 with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate; pyridoxal biosynthesis lyase PdxS 2538017 4599481 Noca_2381 Nocardioides sp. JS614 pyridoxal biosynthesis lyase PdxS YP_923573.1 2537088 D 196162 CDS YP_923574.1 119716609 4599482 2538014..2538619 1 NC_008699.1 PFAM: SNO glutamine amidotransferase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: tfu:Tfu_2097 putative glutamine amidotransferase; SNO glutamine amidotransferase 2538619 4599482 Noca_2382 Nocardioides sp. JS614 SNO glutamine amidotransferase YP_923574.1 2538014 D 196162 CDS YP_923575.1 119716610 4599483 2538629..2539408 1 NC_008699.1 PFAM: protein of unknown function DUF28; KEGG: sco:SCO1521 hypothetical protein; hypothetical protein 2539408 4599483 Noca_2383 Nocardioides sp. JS614 hypothetical protein YP_923575.1 2538629 D 196162 CDS YP_923576.1 119716611 4599484 complement(2539517..2540512) 1 NC_008699.1 KEGG: rha:RHA1_ro05202 hypothetical protein; hypothetical protein 2540512 4599484 Noca_2384 Nocardioides sp. JS614 hypothetical protein YP_923576.1 2539517 R 196162 CDS YP_923577.1 119716612 4599485 2540828..2541361 1 NC_008699.1 TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; KEGG: sma:SAV6833 putative Holliday junction nuclease; Holliday junction endonuclease RuvC 2541361 4599485 Noca_2385 Nocardioides sp. JS614 Holliday junction endonuclease RuvC YP_923577.1 2540828 D 196162 CDS YP_923578.1 119716613 4599486 2541358..2541960 1 NC_008699.1 PFAM: RuvA domain protein; DNA recombination protein RuvA, domain I; SMART: Helix-hairpin-helix DNA-binding, class 1; KEGG: sco:SCO1519 holliday junction DNA helicase; Holliday junction DNA helicase subunit RuvA 2541960 4599486 Noca_2386 Nocardioides sp. JS614 Holliday junction DNA helicase subunit RuvA YP_923578.1 2541358 D 196162 CDS YP_923579.1 119716614 4599487 2541965..2543047 1 NC_008699.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 2543047 ruvB 4599487 ruvB Nocardioides sp. JS614 Holliday junction DNA helicase RuvB YP_923579.1 2541965 D 196162 CDS YP_923580.1 119716615 4599488 2543213..2543524 1 NC_008699.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: ccr:CC1992 preprotein translocase, YajC subunit; protein translocase subunit yajC 2543524 4599488 Noca_2388 Nocardioides sp. JS614 protein translocase subunit yajC YP_923580.1 2543213 D 196162 CDS YP_923581.1 119716616 4599489 2543526..2545220 1 NC_008699.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 2545220 secD 4599489 secD Nocardioides sp. JS614 preprotein translocase subunit SecD YP_923581.1 2543526 D 196162 CDS YP_923582.1 119716617 4599490 2545220..2546458 1 NC_008699.1 TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: sma:SAV6838 putative protein-export membrane protein; protein translocase subunit secF 2546458 4599490 Noca_2390 Nocardioides sp. JS614 protein translocase subunit secF YP_923582.1 2545220 D 196162 CDS YP_923583.1 119716618 4599491 2546455..2547012 1 NC_008699.1 KEGG: tfu:Tfu_2091 adenine phosphoribosyltransferase; TIGRFAM: adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; adenine phosphoribosyltransferase 2547012 4599491 Noca_2391 Nocardioides sp. JS614 adenine phosphoribosyltransferase YP_923583.1 2546455 D 196162 CDS YP_923584.1 119716619 4599492 2547105..2549336 1 NC_008699.1 KEGG: sma:SAV6840 putative ppGpp synthetase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region; RelA/SpoT family protein 2549336 4599492 Noca_2392 Nocardioides sp. JS614 RelA/SpoT family protein YP_923584.1 2547105 D 196162 CDS YP_923585.1 119716620 4599493 2549486..2550409 1 NC_008699.1 KEGG: rno:84352 procollagen, type I, alpha 2; hypothetical protein 2550409 4599493 Noca_2393 Nocardioides sp. JS614 hypothetical protein YP_923585.1 2549486 D 196162 CDS YP_923586.1 119716621 4599494 complement(2550434..2551663) 1 NC_008699.1 PFAM: protein of unknown function DUF349; KEGG: pac:PPA1167 putative ATPase involved in DNA repair; hypothetical protein 2551663 4599494 Noca_2394 Nocardioides sp. JS614 hypothetical protein YP_923586.1 2550434 R 196162 CDS YP_923587.1 119716622 4599495 2551932..2553602 1 NC_008699.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap; KEGG: osa:4326135 Os01g0110200; peptidase S1 and S6, chymotrypsin/Hap 2553602 4599495 Noca_2395 Nocardioides sp. JS614 peptidase S1 and S6, chymotrypsin/Hap YP_923587.1 2551932 D 196162 CDS YP_923588.1 119716623 4599496 2553675..2554388 1 NC_008699.1 PFAM: beta-lactamase domain protein; KEGG: sco:SCO1509 hydrolase; beta-lactamase domain-containing protein 2554388 4599496 Noca_2396 Nocardioides sp. JS614 beta-lactamase domain-containing protein YP_923588.1 2553675 D 196162 CDS YP_923589.1 119716624 4599497 2554390..2555745 1 NC_008699.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 2555745 hisS 4599497 hisS Nocardioides sp. JS614 histidyl-tRNA synthetase YP_923589.1 2554390 D 196162 CDS YP_923590.1 119716625 4599498 2555742..2557514 1 NC_008699.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 2557514 aspS 4599498 aspS Nocardioides sp. JS614 aspartyl-tRNA synthetase YP_923590.1 2555742 D 196162 CDS YP_923591.1 119716626 4599499 2557678..2558688 1 NC_008699.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO5476 oligopeptide transport integral membrane protein; binding-protein-dependent transport system inner membrane protein 2558688 4599499 Noca_2399 Nocardioides sp. JS614 binding-protein-dependent transport system inner membrane protein YP_923591.1 2557678 D 196162 CDS YP_923592.1 119716627 4599500 2558738..2560537 1 NC_008699.1 PFAM: extracellular solute-binding protein, family 5; KEGG: sma:SAV3151 ABC transporter protein BldKB; extracellular solute-binding protein 2560537 4599500 Noca_2400 Nocardioides sp. JS614 extracellular solute-binding protein YP_923592.1 2558738 D 196162 CDS YP_923593.1 119716628 4599501 2560713..2561729 1 NC_008699.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV3152 putative ABC transporter membrane protein BldKC; binding-protein-dependent transport systems inner membrane component 2561729 4599501 Noca_2401 Nocardioides sp. JS614 binding-protein-dependent transport systems inner membrane component YP_923593.1 2560713 D 196162 CDS YP_923594.1 119716629 4599502 2561740..2562783 1 NC_008699.1 KEGG: sma:SAV2766 putative ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 2562783 4599502 Noca_2402 Nocardioides sp. JS614 oligopeptide/dipeptide ABC transporter ATPase YP_923594.1 2561740 D 196162 CDS YP_923595.1 119716630 4599503 2562780..2564057 1 NC_008699.1 KEGG: sco:SCO5116 putative peptide transport system ATP-binding subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 2564057 4599503 Noca_2403 Nocardioides sp. JS614 oligopeptide/dipeptide ABC transporter ATPase YP_923595.1 2562780 D 196162 CDS YP_923596.1 119716631 4599504 2564088..2565458 1 NC_008699.1 PFAM: magnesium chelatase, ChlI subunit; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: sco:SCO1506 conserved ATP/GTP binding protein; recombination factor protein RarA 2565458 4599504 Noca_2404 Nocardioides sp. JS614 recombination factor protein RarA YP_923596.1 2564088 D 196162 CDS YP_923597.1 119716632 4599505 2565470..2565979 1 NC_008699.1 hypothetical protein 2565979 4599505 Noca_2405 Nocardioides sp. JS614 hypothetical protein YP_923597.1 2565470 D 196162 CDS YP_923598.1 119716633 4599506 2565976..2566293 1 NC_008699.1 hypothetical protein 2566293 4599506 Noca_2406 Nocardioides sp. JS614 hypothetical protein YP_923598.1 2565976 D 196162 CDS YP_923599.1 119716634 4599507 2566293..2568983 1 NC_008699.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 2568983 alaS 4599507 alaS Nocardioides sp. JS614 alanyl-tRNA synthetase YP_923599.1 2566293 D 196162 CDS YP_923600.1 119716635 4599508 2569007..2569477 1 NC_008699.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 2569477 4599508 Noca_2408 Nocardioides sp. JS614 Holliday junction resolvase-like protein YP_923600.1 2569007 D 196162 CDS YP_923601.1 119716636 4598245 2569478..2570671 1 NC_008699.1 PFAM: aminodeoxychorismate lyase; KEGG: fal:FRAAL5250 hypothetical integral membrane protein; aminodeoxychorismate lyase 2570671 4598245 Noca_2409 Nocardioides sp. JS614 aminodeoxychorismate lyase YP_923601.1 2569478 D 196162 CDS YP_923602.1 119716637 4598246 2570706..2571518 1 NC_008699.1 PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding, N-terminal domain protein; KEGG: sma:SAV6853 putative shikimate 5-dehydrogenase; shikimate dehydrogenase 2571518 4598246 Noca_2410 Nocardioides sp. JS614 shikimate dehydrogenase YP_923602.1 2570706 D 196162 CDS YP_923603.1 119716638 4598247 2571515..2572243 1 NC_008699.1 PFAM: peptidase A24A, prepilin type IV; KEGG: sco:SCO4549 putative type IV peptidase; peptidase A24A, prepilin type IV 2572243 4598247 Noca_2411 Nocardioides sp. JS614 peptidase A24A, prepilin type IV YP_923603.1 2571515 D 196162 CDS YP_923604.1 119716639 4598248 2572283..2573461 1 NC_008699.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 2573461 4598248 Noca_2412 Nocardioides sp. JS614 chorismate synthase YP_923604.1 2572283 D 196162 CDS YP_923605.1 119716640 4598249 2573458..2574009 1 NC_008699.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 2574009 aroK 4598249 aroK Nocardioides sp. JS614 shikimate kinase YP_923605.1 2573458 D 196162 CDS YP_923606.1 119716641 4598250 2574006..2575103 1 NC_008699.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 2575103 aroB 4598250 aroB Nocardioides sp. JS614 3-dehydroquinate synthase YP_923606.1 2574006 D 196162 CDS YP_923607.1 119716642 4598251 2575100..2575540 1 NC_008699.1 PFAM: dehydroquinase, class II; KEGG: pac:PPA1686 3-dehydroquinate dehydratase; 3-dehydroquinate dehydratase 2575540 4598251 Noca_2415 Nocardioides sp. JS614 3-dehydroquinate dehydratase YP_923607.1 2575100 D 196162 CDS YP_923608.1 119716643 4598252 2575653..2576450 1 NC_008699.1 PFAM: protein of unknown function DUF541; KEGG: bmb:BruAb1_1470 Omp28, immunoreactive 28 kDa outer membrane protein; hypothetical protein 2576450 4598252 Noca_2416 Nocardioides sp. JS614 hypothetical protein YP_923608.1 2575653 D 196162 CDS YP_923609.1 119716644 4598253 2576695..2577258 1 NC_008699.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 2577258 4598253 Noca_2417 Nocardioides sp. JS614 elongation factor P YP_923609.1 2576695 D 196162 CDS YP_923610.1 119716645 4598254 2577258..2577665 1 NC_008699.1 TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: tfu:Tfu_1094 NusB antitermination factor; transcription antitermination factor NusB 2577665 4598254 Noca_2418 Nocardioides sp. JS614 transcription antitermination factor NusB YP_923610.1 2577258 D 196162 CDS YP_923611.1 119716646 4598255 2577702..2579078 1 NC_008699.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: sco:SCO3443 putative pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2579078 4598255 Noca_2419 Nocardioides sp. JS614 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_923611.1 2577702 D 196162 CDS YP_923612.1 119716647 4598256 2579075..2579911 1 NC_008699.1 PFAM: protein of unknown function DUF1206; KEGG: fal:FRAAL1885 putative integral membrane protein; hypothetical protein 2579911 4598256 Noca_2420 Nocardioides sp. JS614 hypothetical protein YP_923612.1 2579075 D 196162 CDS YP_923613.1 119716648 4598257 2580027..2581346 1 NC_008699.1 KEGG: fal:FRAAL6717 conserved hypothetical protein; putative signal peptide; putative signal peptide 2581346 4598257 Noca_2421 Nocardioides sp. JS614 putative signal peptide YP_923613.1 2580027 D 196162 CDS YP_923614.1 119716649 4598258 2581358..2582389 1 NC_008699.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: mmc:Mmcs_2351 alcohol dehydrogenase, zinc-binding protein; alcohol dehydrogenase 2582389 4598258 Noca_2422 Nocardioides sp. JS614 alcohol dehydrogenase YP_923614.1 2581358 D 196162 CDS YP_923615.1 119716650 4598259 2582618..2584087 1 NC_008699.1 TIGRFAM: arginine/ornithine antiporter; PFAM: amino acid permease-associated region; KEGG: hch:HCH_05491 amino acid transporters; arginine/ornithine antiporter 2584087 4598259 Noca_2423 Nocardioides sp. JS614 arginine/ornithine antiporter YP_923615.1 2582618 D 196162 CDS YP_923616.1 119716651 4598260 2584229..2585524 1 NC_008699.1 catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase 2585524 4598260 Noca_2424 Nocardioides sp. JS614 arginine deiminase YP_923616.1 2584229 D 196162 CDS YP_923617.1 119716652 4598261 2585553..2586557 1 NC_008699.1 TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; KEGG: pfl:PFL_4636 ornithine carbamoyltransferase; ornithine carbamoyltransferase 2586557 4598261 Noca_2425 Nocardioides sp. JS614 ornithine carbamoyltransferase YP_923617.1 2585553 D 196162 CDS YP_923618.2 161485634 4598262 2586572..2587528 1 NC_008699.1 reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 2587528 4598262 Noca_2426 Nocardioides sp. JS614 carbamate kinase YP_923618.2 2586572 D 196162 CDS YP_923619.1 119716654 4598263 2587676..2588290 1 NC_008699.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase 2588290 4598263 Noca_2427 Nocardioides sp. JS614 bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase YP_923619.1 2587676 D 196162 CDS YP_923620.1 119716655 4598264 2588287..2589261 1 NC_008699.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 2589261 pyrB 4598264 pyrB Nocardioides sp. JS614 aspartate carbamoyltransferase catalytic subunit YP_923620.1 2588287 D 196162 CDS YP_923621.1 119716656 4598265 2589258..2590556 1 NC_008699.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 2590556 pyrC 4598265 pyrC Nocardioides sp. JS614 dihydroorotase YP_923621.1 2589258 D 196162 CDS YP_923622.1 119716657 4598266 2590553..2591689 1 NC_008699.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 2591689 4598266 Noca_2430 Nocardioides sp. JS614 carbamoyl phosphate synthase small subunit YP_923622.1 2590553 D 196162 CDS YP_923623.1 119716658 4598267 2591689..2595120 1 NC_008699.1 TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain, oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; RimK domain protein ATP-grasp; KEGG: sco:SCO1483 carbamoylphosphate synthetase large chain; carbamoyl-phosphate synthase large subunit 2595120 4598267 Noca_2431 Nocardioides sp. JS614 carbamoyl-phosphate synthase large subunit YP_923623.1 2591689 D 196162 CDS YP_923624.1 119716659 4598268 2595122..2596189 1 NC_008699.1 PFAM: dihydroorotate dehydrogenase; KEGG: tfu:Tfu_0927 dihydroorotate dehydrogenase; dihydroorotate oxidase A 2596189 4598268 Noca_2432 Nocardioides sp. JS614 dihydroorotate oxidase A YP_923624.1 2595122 D 196162 CDS YP_923625.1 119716660 4598269 2596186..2597007 1 NC_008699.1 TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: sma:SAV6869 putative orotidine 5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase 2597007 4598269 Noca_2433 Nocardioides sp. JS614 orotidine 5'-phosphate decarboxylase YP_923625.1 2596186 D 196162 CDS YP_923626.1 119716661 4598270 2597004..2597435 1 NC_008699.1 hypothetical protein 2597435 4598270 Noca_2434 Nocardioides sp. JS614 hypothetical protein YP_923626.1 2597004 D 196162 CDS YP_923627.1 119716662 4598271 2597538..2597864 1 NC_008699.1 KEGG: sma:SAV6870 hypothetical protein; hypothetical protein 2597864 4598271 Noca_2435 Nocardioides sp. JS614 hypothetical protein YP_923627.1 2597538 D 196162 CDS YP_923628.1 119716663 4598272 2597880..2598464 1 NC_008699.1 KEGG: lxx:Lxx11120 guanylate kinase; PFAM: guanylate kinase; SMART: guanylate kinase/L-type calcium channel region; guanylate kinase 2598464 4598272 Noca_2436 Nocardioides sp. JS614 guanylate kinase YP_923628.1 2597880 D 196162 CDS YP_923629.1 119716664 4598273 2598474..2598806 1 NC_008699.1 TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; KEGG: sma:SAV6872 putative RNA polymerase omega subunit; DNA-directed RNA polymerase subunit omega 2598806 4598273 Noca_2437 Nocardioides sp. JS614 DNA-directed RNA polymerase subunit omega YP_923629.1 2598474 D 196162 CDS YP_923630.1 119716665 4598274 2598781..2600091 1 NC_008699.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 2600091 4598274 Noca_2438 Nocardioides sp. JS614 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase YP_923630.1 2598781 D 196162 CDS YP_923631.1 119716666 4598275 2600173..2601363 1 NC_008699.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 2601363 4598275 Noca_2439 Nocardioides sp. JS614 S-adenosylmethionine synthetase YP_923631.1 2600173 D 196162 CDS YP_923632.1 119716667 4598276 2601488..2603521 1 NC_008699.1 KEGG: tfu:Tfu_1073 primosomal protein N' (replication factor Y) (superfamily II helicase); primosomal protein N' 2603521 4598276 Noca_2440 Nocardioides sp. JS614 primosomal protein N' YP_923632.1 2601488 D 196162 CDS YP_923633.1 119716668 4598277 2603597..2604142 1 NC_008699.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 2604142 def 4598277 def Nocardioides sp. JS614 peptide deformylase YP_923633.1 2603597 D 196162 CDS YP_923634.1 119716669 4598278 2604145..2605095 1 NC_008699.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 2605095 fmt 4598278 fmt Nocardioides sp. JS614 methionyl-tRNA formyltransferase YP_923634.1 2604145 D 196162 CDS YP_923635.1 119716670 4598279 2605306..2606724 1 NC_008699.1 PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: sco:SCO1472 conserved hypothetical Sun-family protein SCL6.29c; Fmu (Sun) domain-containing protein 2606724 4598279 Noca_2443 Nocardioides sp. JS614 Fmu (Sun) domain-containing protein YP_923635.1 2605306 D 196162 CDS YP_923636.1 119716671 4599786 2607448..2608428 1 NC_008699.1 KEGG: rha:RHA1_ro05237 possible DNA ligase (ATP), C-terminal; putative DNA ligase (ATP), C-terminal 2608428 4599786 Noca_2445 Nocardioides sp. JS614 putative DNA ligase (ATP), C-terminal YP_923636.1 2607448 D 196162 CDS YP_923637.1 119716672 4599787 2608438..2609100 1 NC_008699.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 2609100 4599787 Noca_2446 Nocardioides sp. JS614 ribulose-phosphate 3-epimerase YP_923637.1 2608438 D 196162 CDS YP_923638.1 119716673 4599788 2609486..2610523 1 NC_008699.1 KEGG: pac:PPA1752 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase 2610523 4599788 Noca_2447 Nocardioides sp. JS614 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase YP_923638.1 2609486 D 196162 CDS YP_923639.1 119716674 4599789 2610526..2611179 1 NC_008699.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 2611179 4599789 Noca_2448 Nocardioides sp. JS614 riboflavin synthase subunit alpha YP_923639.1 2610526 D 196162 CDS YP_923640.1 119716675 4599790 2611176..2612456 1 NC_008699.1 PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: tfu:Tfu_1080 3,4-dihydroxy-2-butanone 4-phosphate synthase:GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase 2612456 4599790 Noca_2449 Nocardioides sp. JS614 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_923640.1 2611176 D 196162 CDS YP_923641.1 119716676 4599791 2612460..2612945 1 NC_008699.1 PFAM: 6,7-dimethyl-8-ribityllumazine synthase; KEGG: sma:SAV6905 putative riboflavin synthase beta subunit; 6,7-dimethyl-8-ribityllumazine synthase 2612945 4599791 Noca_2450 Nocardioides sp. JS614 6,7-dimethyl-8-ribityllumazine synthase YP_923641.1 2612460 D 196162 CDS YP_923642.1 119716677 4599792 2612957..2613220 1 NC_008699.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase 2613220 hisE 4599792 hisE Nocardioides sp. JS614 phosphoribosyl-ATP pyrophosphatase YP_923642.1 2612957 D 196162 CDS YP_923643.1 119716678 4599793 2613232..2614095 1 NC_008699.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 2614095 hisG 4599793 hisG Nocardioides sp. JS614 ATP phosphoribosyltransferase YP_923643.1 2613232 D 196162 CDS YP_923644.1 119716679 4599794 2614079..2614576 1 NC_008699.1 KEGG: tfu:Tfu_1082 hypothetical protein; hypothetical protein 2614576 4599794 Noca_2453 Nocardioides sp. JS614 hypothetical protein YP_923644.1 2614079 D 196162 CDS YP_923645.1 119716680 4599795 complement(2614573..2615496) 1 NC_008699.1 PFAM: Aldose 1-epimerase; KEGG: fal:FRAAL2426 putative aldose-1-epimerase; aldose 1-epimerase 2615496 4599795 Noca_2454 Nocardioides sp. JS614 aldose 1-epimerase YP_923645.1 2614573 R 196162 CDS YP_923646.1 119716681 4599796 complement(2615507..2616061) 1 NC_008699.1 KEGG: fal:FRAAL4224 hypothetical protein; hypothetical protein 2616061 4599796 Noca_2455 Nocardioides sp. JS614 hypothetical protein YP_923646.1 2615507 R 196162 CDS YP_923647.1 119716682 4599797 complement(2616070..2617305) 1 NC_008699.1 KEGG: sma:SAV6730 hypothetical protein; hypothetical protein 2617305 4599797 Noca_2456 Nocardioides sp. JS614 hypothetical protein YP_923647.1 2616070 R 196162 CDS YP_923648.1 119716683 4599798 complement(2617305..2617751) 1 NC_008699.1 KEGG: tfu:Tfu_1823 hypothetical protein; hypothetical protein 2617751 4599798 Noca_2457 Nocardioides sp. JS614 hypothetical protein YP_923648.1 2617305 R 196162 CDS YP_923649.1 119716684 4599799 2617821..2618348 1 NC_008699.1 KEGG: sco:SCO1602 hypothetical protein; hypothetical protein 2618348 4599799 Noca_2458 Nocardioides sp. JS614 hypothetical protein YP_923649.1 2617821 D 196162 CDS YP_923650.1 119716685 4599800 2618629..2619360 1 NC_008699.1 TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: pac:PPA1414 translation initiation factor IF-3; translation initiation factor 3 2619360 4599800 Noca_2459 Nocardioides sp. JS614 translation initiation factor 3 YP_923650.1 2618629 D 196162 CDS YP_923651.1 119716686 4599801 2619458..2619652 1 NC_008699.1 PFAM: ribosomal protein L35; KEGG: sma:SAV6738 putative ribosomal protein L35; 50S ribosomal protein L35 2619652 rpmI 4599801 rpmI Nocardioides sp. JS614 50S ribosomal protein L35 YP_923651.1 2619458 D 196162 CDS YP_923652.1 119716687 4599802 2619723..2620115 1 NC_008699.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 2620115 rplT 4599802 rplT Nocardioides sp. JS614 50S ribosomal protein L20 YP_923652.1 2619723 D 196162 CDS YP_923653.1 119716688 4599803 2620178..2620891 1 NC_008699.1 PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; KEGG: sma:SAV6740 putative rRNA methylase; tRNA/rRNA methyltransferase SpoU 2620891 4599803 Noca_2462 Nocardioides sp. JS614 tRNA/rRNA methyltransferase SpoU YP_923653.1 2620178 D 196162 CDS YP_923654.1 119716689 4597085 2620902..2623208 1 NC_008699.1 PFAM: glycoside hydrolase, family 31; KEGG: rxy:Rxyl_2586 glycoside hydrolase, family 31; alpha-glucosidase 2623208 4597085 Noca_2463 Nocardioides sp. JS614 alpha-glucosidase YP_923654.1 2620902 D 196162 CDS YP_923655.1 119716690 4597086 2623205..2624233 1 NC_008699.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: sco:SCO1596 two-component sensor; ATPase domain-containing protein 2624233 4597086 Noca_2464 Nocardioides sp. JS614 ATPase domain-containing protein YP_923655.1 2623205 D 196162 CDS YP_923656.1 119716691 4597087 2624334..2625440 1 NC_008699.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 2625440 pheS 4597087 pheS Nocardioides sp. JS614 phenylalanyl-tRNA synthetase subunit alpha YP_923656.1 2624334 D 196162 CDS YP_923657.1 119716692 4597088 2625448..2627931 1 NC_008699.1 TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; KEGG: sma:SAV6743 putative phenylalanyl-tRNA synthetase beta subunit; phenylalanyl-tRNA synthetase subunit beta 2627931 4597088 Noca_2466 Nocardioides sp. JS614 phenylalanyl-tRNA synthetase subunit beta YP_923657.1 2625448 D 196162 CDS YP_923658.1 119716693 4597089 complement(2627991..2628791) 1 NC_008699.1 PFAM: protein of unknown function DUF1503; KEGG: tfu:Tfu_2998 hypothetical protein; hypothetical protein 2628791 4597089 Noca_2467 Nocardioides sp. JS614 hypothetical protein YP_923658.1 2627991 R 196162 CDS YP_923659.1 119716694 4597090 2628891..2629937 1 NC_008699.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 2629937 argC 4597090 argC Nocardioides sp. JS614 N-acetyl-gamma-glutamyl-phosphate reductase YP_923659.1 2628891 D 196162 CDS YP_923660.1 119716695 4597091 2629934..2631085 1 NC_008699.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 2631085 argJ 4597091 argJ Nocardioides sp. JS614 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase YP_923660.1 2629934 D 196162 CDS YP_923661.1 119716696 4597092 2631082..2632020 1 NC_008699.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 2632020 4597092 Noca_2470 Nocardioides sp. JS614 acetylglutamate kinase YP_923661.1 2631082 D 196162 CDS YP_923662.1 119716697 4597093 2632017..2633252 1 NC_008699.1 TIGRFAM: acetylornithine and succinylornithine aminotransferases; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class-III; KEGG: nfa:nfa19390 putative acetylornithine aminotransferase; acetylornithine aminotransferase 2633252 4597093 Noca_2471 Nocardioides sp. JS614 acetylornithine aminotransferase YP_923662.1 2632017 D 196162 CDS YP_923663.1 119716698 4597094 2633249..2634169 1 NC_008699.1 TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; KEGG: lxx:Lxx06070 ornithine carbamoyltransferase; ornithine carbamoyltransferase 2634169 4597094 Noca_2472 Nocardioides sp. JS614 ornithine carbamoyltransferase YP_923663.1 2633249 D 196162 CDS YP_923664.1 119716699 4597095 2634166..2634708 1 NC_008699.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor 2634708 4597095 Noca_2473 Nocardioides sp. JS614 arginine repressor YP_923664.1 2634166 D 196162 CDS YP_923665.1 119716700 4597096 2634705..2636138 1 NC_008699.1 catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; argininosuccinate synthase 2636138 4597096 Noca_2474 Nocardioides sp. JS614 argininosuccinate synthase YP_923665.1 2634705 D 196162 CDS YP_923666.1 119716701 4597097 2636138..2637550 1 NC_008699.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 2637550 4597097 Noca_2475 Nocardioides sp. JS614 argininosuccinate lyase YP_923666.1 2636138 D 196162 CDS YP_923667.1 119716702 4597098 2637534..2638127 1 NC_008699.1 responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase 2638127 4597098 Noca_2476 Nocardioides sp. JS614 3-methyladenine DNA glycosylase YP_923667.1 2637534 D 196162 CDS YP_923668.1 119716703 4597102 2644083..2644439 1 NC_008699.1 PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: tfu:Tfu_2039 hypothetical protein; single-strand binding protein/primosomal replication protein n 2644439 4597102 Noca_2477 Nocardioides sp. JS614 single-strand binding protein/primosomal replication protein n YP_923668.1 2644083 D 196162 CDS YP_923669.1 119716704 4597103 complement(2644414..2645538) 1 NC_008699.1 KEGG: sco:SCO1789 hypothetical protein; hypothetical protein 2645538 4597103 Noca_2478 Nocardioides sp. JS614 hypothetical protein YP_923669.1 2644414 R 196162 CDS YP_923670.1 119716705 4597104 2645586..2646584 1 NC_008699.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sma:SAV6490 hydrolase; HAD family hydrolase 2646584 4597104 Noca_2479 Nocardioides sp. JS614 HAD family hydrolase YP_923670.1 2645586 D 196162 CDS YP_923671.1 119716706 4597105 2646815..2647654 1 NC_008699.1 TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; KEGG: sco:SCO1782 putative membrane protein; hemolysin A 2647654 4597105 Noca_2480 Nocardioides sp. JS614 hemolysin A YP_923671.1 2646815 D 196162 CDS YP_923672.1 119716707 4597106 2647654..2648613 1 NC_008699.1 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 2648613 ppnK 4597106 ppnK Nocardioides sp. JS614 inorganic polyphosphate/ATP-NAD kinase YP_923672.1 2647654 D 196162 CDS YP_923673.1 119716708 4597107 2648606..2650360 1 NC_008699.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: sma:SAV6499 putative recombination and DNA repair protein; DNA repair protein RecN 2650360 4597107 Noca_2482 Nocardioides sp. JS614 DNA repair protein RecN YP_923673.1 2648606 D 196162 CDS YP_923674.1 119716709 4597108 2650433..2651617 1 NC_008699.1 KEGG: rha:RHA1_ro00933 hypothetical protein; hypothetical protein 2651617 4597108 Noca_2483 Nocardioides sp. JS614 hypothetical protein YP_923674.1 2650433 D 196162 CDS YP_923675.1 119716710 4597109 2651614..2652480 1 NC_008699.1 KEGG: nfa:nfa20040 hypothetical protein; hypothetical protein 2652480 4597109 Noca_2484 Nocardioides sp. JS614 hypothetical protein YP_923675.1 2651614 D 196162 CDS YP_923676.1 119716711 4597110 2652492..2654201 1 NC_008699.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 2654201 pyrG 4597110 pyrG Nocardioides sp. JS614 CTP synthetase YP_923676.1 2652492 D 196162 CDS YP_923677.1 119716712 4597111 2654222..2654803 1 NC_008699.1 PFAM: NUDIX hydrolase; KEGG: tfu:Tfu_1200 conserved hypothetical protein; NUDIX hydrolase 2654803 4597111 Noca_2486 Nocardioides sp. JS614 NUDIX hydrolase YP_923677.1 2654222 D 196162 CDS YP_923678.1 119716713 4597112 2654859..2656169 1 NC_008699.1 KEGG: tcx:Tcr_0373 hypothetical protein; hypothetical protein 2656169 4597112 Noca_2487 Nocardioides sp. JS614 hypothetical protein YP_923678.1 2654859 D 196162 CDS YP_923679.1 119716714 4597113 2656219..2657334 1 NC_008699.1 TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; KEGG: sma:SAV6507 putative L-alanine dehydrogenase; L-alanine dehydrogenase 2657334 4597113 Noca_2488 Nocardioides sp. JS614 L-alanine dehydrogenase YP_923679.1 2656219 D 196162 CDS YP_923680.1 119716715 4597114 2657331..2658287 1 NC_008699.1 TIGRFAM: tyrosine recombinase XerD; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: nfa:nfa20070 putative recombinase; tyrosine recombinase XerD 2658287 4597114 Noca_2489 Nocardioides sp. JS614 tyrosine recombinase XerD YP_923680.1 2657331 D 196162 CDS YP_923681.1 119716716 4597115 2658294..2660891 1 NC_008699.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: nfa:nfa37840 putative helicase; DEAD/DEAH box helicase 2660891 4597115 Noca_2490 Nocardioides sp. JS614 DEAD/DEAH box helicase YP_923681.1 2658294 D 196162 CDS YP_923682.1 119716717 4597116 complement(2661013..2662389) 1 NC_008699.1 PFAM: glycoside hydrolase, family 26; KEGG: bfs:BF0771 putative mannosidase; glycoside hydrolase family protein 2662389 4597116 Noca_2491 Nocardioides sp. JS614 glycoside hydrolase family protein YP_923682.1 2661013 R 196162 CDS YP_923683.1 119716718 4597117 2662413..2662703 1 NC_008699.1 KEGG: pac:PPA0096 hypothetical protein; hypothetical protein 2662703 4597117 Noca_2492 Nocardioides sp. JS614 hypothetical protein YP_923683.1 2662413 D 196162 CDS YP_923684.1 119716719 4597118 2662907..2664010 1 NC_008699.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: sma:SAV6508 partitioning or sporulation protein; cobyrinic acid a,c-diamide synthase 2664010 4597118 Noca_2493 Nocardioides sp. JS614 cobyrinic acid a,c-diamide synthase YP_923684.1 2662907 D 196162 CDS YP_923685.1 119716720 4597119 2664007..2664354 1 NC_008699.1 KEGG: sma:SAV6509 hypothetical protein; hypothetical protein 2664354 4597119 Noca_2494 Nocardioides sp. JS614 hypothetical protein YP_923685.1 2664007 D 196162 CDS YP_923686.1 119716721 4597120 2664351..2665280 1 NC_008699.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: sma:SAV6510 putative segregation and condensation protein A; condensin subunit ScpA 2665280 4597120 Noca_2495 Nocardioides sp. JS614 condensin subunit ScpA YP_923686.1 2664351 D 196162 CDS YP_923687.1 119716722 4597121 2665270..2665995 1 NC_008699.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: sma:SAV6511 segregation and condensation protein B; condensin subunit ScpB 2665995 4597121 Noca_2496 Nocardioides sp. JS614 condensin subunit ScpB YP_923687.1 2665270 D 196162 CDS YP_923688.1 119716723 4597122 2665992..2666747 1 NC_008699.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pac:PPA1385 ribosomal large subunit pseudouridine synthase B; ribosomal large subunit pseudouridine synthase B 2666747 4597122 Noca_2497 Nocardioides sp. JS614 ribosomal large subunit pseudouridine synthase B YP_923688.1 2665992 D 196162 CDS YP_923689.1 119716724 4597828 2666810..2667331 1 NC_008699.1 PFAM: Mycobacterium tuberculosis paralogous family 11; KEGG: mpa:MAP2474c hypothetical protein; hypothetical protein 2667331 4597828 Noca_2498 Nocardioides sp. JS614 hypothetical protein YP_923689.1 2666810 D 196162 CDS YP_923690.1 119716725 4597829 2667444..2667830 1 NC_008699.1 TIGRFAM: chorismate mutase; PFAM: Chorismate mutase of the AroH class; KEGG: sma:SAV6520 putative chorismate mutase; chorismate mutase 2667830 4597829 Noca_2499 Nocardioides sp. JS614 chorismate mutase YP_923690.1 2667444 D 196162 CDS YP_923691.1 119716726 4597830 2667823..2668908 1 NC_008699.1 PFAM: amino acid-binding ACT domain protein; Prephenate dehydrogenase; KEGG: lxx:Lxx05720 prephenate dehydrogenase; prephenate dehydrogenase 2668908 4597830 Noca_2500 Nocardioides sp. JS614 prephenate dehydrogenase YP_923691.1 2667823 D 196162 CDS YP_923692.1 119716727 4597831 2668890..2669621 1 NC_008699.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 2669621 cmk 4597831 cmk Nocardioides sp. JS614 cytidylate kinase YP_923692.1 2668890 D 196162 CDS YP_923693.1 119716728 4597832 2669643..2670407 1 NC_008699.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: sco:SCO1759 transferase; phospholipid/glycerol acyltransferase 2670407 4597832 Noca_2502 Nocardioides sp. JS614 phospholipid/glycerol acyltransferase YP_923693.1 2669643 D 196162 CDS YP_923694.1 119716729 4597833 2670404..2671789 1 NC_008699.1 synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 2671789 engA 4597833 engA Nocardioides sp. JS614 GTP-binding protein EngA YP_923694.1 2670404 D 196162 CDS YP_923695.1 119716730 4597835 complement(2672374..2673105) 1 NC_008699.1 PFAM: protein of unknown function DUF124; KEGG: rxy:Rxyl_3200 protein of unknown function DUF124; hypothetical protein 2673105 4597835 Noca_2504 Nocardioides sp. JS614 hypothetical protein YP_923695.1 2672374 R 196162 CDS YP_923696.1 119716731 4597836 2673229..2673645 1 NC_008699.1 KEGG: mmu:233210 proline rich 12; hypothetical protein 2673645 4597836 Noca_2505 Nocardioides sp. JS614 hypothetical protein YP_923696.1 2673229 D 196162 CDS YP_923697.1 119716732 4597837 2673689..2674408 1 NC_008699.1 PFAM: protein of unknown function DUF81; KEGG: rxy:Rxyl_0506 protein of unknown function DUF81; hypothetical protein 2674408 4597837 Noca_2506 Nocardioides sp. JS614 hypothetical protein YP_923697.1 2673689 D 196162 CDS YP_923698.1 119716733 4597838 2674572..2675333 1 NC_008699.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: nar:Saro_2963 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2675333 4597838 Noca_2507 Nocardioides sp. JS614 short-chain dehydrogenase/reductase SDR YP_923698.1 2674572 D 196162 CDS YP_923699.1 119716734 4597839 2675402..2676154 1 NC_008699.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro04763 short-chain dehydrogenase; short-chain dehydrogenase/reductase SDR 2676154 4597839 Noca_2508 Nocardioides sp. JS614 short-chain dehydrogenase/reductase SDR YP_923699.1 2675402 D 196162 CDS YP_923700.1 119716735 4597840 2676234..2677721 1 NC_008699.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 2677721 4597840 Noca_2509 Nocardioides sp. JS614 cobyric acid synthase YP_923700.1 2676234 D 196162 CDS YP_923701.1 119716736 4597841 2677718..2678239 1 NC_008699.1 PFAM: cobalbumin biosynthesis enzyme; KEGG: mbo:Mb0260c putative bifunctional cobalamin biosynthesis protein CobU: cobinamide kinase + cobinamide phosphate guanylyltransferase; adenosylcobinamide kinase 2678239 4597841 Noca_2510 Nocardioides sp. JS614 adenosylcobinamide kinase YP_923701.1 2677718 D 196162 CDS YP_923702.1 119716737 4597842 complement(2678400..2679089) 1 NC_008699.1 PFAM: cobalamin-5-phosphate synthase CobS; KEGG: tfu:Tfu_0996 putative cobalamin (5'-phosphate) synthase : adenosylcobinamide-GDP ribazoletransferase; cobalamin-5'-phosphate synthase 2679089 4597842 Noca_2511 Nocardioides sp. JS614 cobalamin-5'-phosphate synthase YP_923702.1 2678400 R 196162 CDS YP_923703.1 119716738 4597843 complement(2679082..2680101) 1 NC_008699.1 PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; KEGG: mpa:MAP1948 putative nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 2680101 4597843 Noca_2512 Nocardioides sp. JS614 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_923703.1 2679082 R 196162 CDS YP_923704.1 119716739 4597844 complement(2680107..2680667) 1 NC_008699.1 KEGG: cgb:cg0382 adenylate kinase or related kinase; adenylate kinase 2680667 4597844 Noca_2513 Nocardioides sp. JS614 adenylate kinase YP_923704.1 2680107 R 196162 CDS YP_923705.1 119716740 4597845 2680690..2681478 1 NC_008699.1 KEGG: pac:PPA2016 conserved protein (putative spermidine synthase); putative spermidine synthase 2681478 4597845 Noca_2514 Nocardioides sp. JS614 putative spermidine synthase YP_923705.1 2680690 D 196162 CDS YP_923706.1 119716741 4597846 complement(2681620..2682918) 1 NC_008699.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: mtc:MT3905 IS1557, transposase; transposase, IS204/IS1001/IS1096/IS1165 family protein 2682918 4597846 Noca_2515 Nocardioides sp. JS614 transposase, IS204/IS1001/IS1096/IS1165 family protein YP_923706.1 2681620 R 196162 CDS YP_923707.1 119716742 4597847 complement(2683044..2684156) 1 NC_008699.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rha:RHA1_ro04692 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2684156 4597847 Noca_2516 Nocardioides sp. JS614 acyl-CoA dehydrogenase domain-containing protein YP_923707.1 2683044 R 196162 CDS YP_923708.1 119716743 4597848 complement(2684172..2685359) 1 NC_008699.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rha:RHA1_ro04693 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2685359 4597848 Noca_2517 Nocardioides sp. JS614 acyl-CoA dehydrogenase domain-containing protein YP_923708.1 2684172 R 196162 CDS YP_923709.1 119716744 4597849 2685470..2686666 1 NC_008699.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: rha:RHA1_ro04538 ketosteroid-9-alpha-hydroxylase, oxygenase; Rieske (2Fe-2S) domain-containing protein 2686666 4597849 Noca_2518 Nocardioides sp. JS614 Rieske (2Fe-2S) domain-containing protein YP_923709.1 2685470 D 196162 CDS YP_923710.1 119716745 4597850 2686666..2686968 1 NC_008699.1 KEGG: mmc:Mmcs_4641 hypothetical protein; hypothetical protein 2686968 4597850 Noca_2519 Nocardioides sp. JS614 hypothetical protein YP_923710.1 2686666 D 196162 CDS YP_923711.1 119716746 4597851 2686969..2688069 1 NC_008699.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: nfa:nfa50680 putative oxidoreductase; ferredoxin 2688069 4597851 Noca_2520 Nocardioides sp. JS614 ferredoxin YP_923711.1 2686969 D 196162 CDS YP_923712.1 119716747 4597852 2688226..2688804 1 NC_008699.1 hypothetical protein 2688804 4597852 Noca_2521 Nocardioides sp. JS614 hypothetical protein YP_923712.1 2688226 D 196162 CDS YP_923713.1 119716748 4597853 complement(2688838..2689530) 1 NC_008699.1 PFAM: beta-lactamase domain protein; KEGG: fra:Francci3_1630 beta-lactamase-like; beta-lactamase domain-containing protein 2689530 4597853 Noca_2522 Nocardioides sp. JS614 beta-lactamase domain-containing protein YP_923713.1 2688838 R 196162 CDS YP_923714.1 119716749 4597854 complement(2689530..2690258) 1 NC_008699.1 KEGG: sco:SCO1959 hypothetical protein; hypothetical protein 2690258 4597854 Noca_2523 Nocardioides sp. JS614 hypothetical protein YP_923714.1 2689530 R 196162 CDS YP_923715.1 119716750 4597855 2690401..2693460 1 NC_008699.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 2693460 uvrA 4597855 uvrA Nocardioides sp. JS614 excinuclease ABC subunit A YP_923715.1 2690401 D 196162 CDS YP_923716.1 119716751 4597856 2693599..2693967 1 NC_008699.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: sco:SCO1356 iron sulphur protein (secreted protein); Rieske (2Fe-2S) domain-containing protein 2693967 4597856 Noca_2525 Nocardioides sp. JS614 Rieske (2Fe-2S) domain-containing protein YP_923716.1 2693599 D 196162 CDS YP_923717.1 119716752 4597857 2693997..2695997 1 NC_008699.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 2695997 uvrC 4597857 uvrC Nocardioides sp. JS614 excinuclease ABC subunit C YP_923717.1 2693997 D 196162 CDS YP_923718.1 119716753 4597858 2696001..2696906 1 NC_008699.1 PFAM: Uncharacterised P-loop ATPase protein UPF0042; KEGG: fal:FRAAL4592 putative kinase; hypothetical protein 2696906 4597858 Noca_2527 Nocardioides sp. JS614 hypothetical protein YP_923718.1 2696001 D 196162 CDS YP_923719.1 119716754 4597859 2696914..2697906 1 NC_008699.1 PFAM: protein of unknown function UPF0052 and CofD; KEGG: tfu:Tfu_2019 conserved hypothetical protein CofD related; hypothetical protein 2697906 4597859 Noca_2528 Nocardioides sp. JS614 hypothetical protein YP_923719.1 2696914 D 196162 CDS YP_923720.1 119716755 4597860 2697929..2698915 1 NC_008699.1 PFAM: protein of unknown function DUF199; KEGG: sma:SAV6294 sporulation regulatory protein; hypothetical protein 2698915 4597860 Noca_2529 Nocardioides sp. JS614 hypothetical protein YP_923720.1 2697929 D 196162 CDS YP_923721.1 119716756 4597861 2699083..2700078 1 NC_008699.1 KEGG: cdi:DIP1310 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase 2700078 4597861 Noca_2530 Nocardioides sp. JS614 glyceraldehyde-3-phosphate dehydrogenase YP_923721.1 2699083 D 196162 CDS YP_923722.1 119716757 4597862 2700081..2701280 1 NC_008699.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 2701280 pgk 4597862 pgk Nocardioides sp. JS614 phosphoglycerate kinase YP_923722.1 2700081 D 196162 CDS YP_923723.1 119716758 4597863 2701382..2702176 1 NC_008699.1 PFAM: triosephosphate isomerase; KEGG: sco:SCO1945 triosephosphate isomerase; triosephosphate isomerase 2702176 4597863 Noca_2532 Nocardioides sp. JS614 triosephosphate isomerase YP_923723.1 2701382 D 196162 CDS YP_923724.1 119716759 4597864 2702208..2702438 1 NC_008699.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: sco:SCO1944 protein-export membrane protein secG; protein translocase subunit secG 2702438 4597864 Noca_2533 Nocardioides sp. JS614 protein translocase subunit secG YP_923724.1 2702208 D 196162 CDS YP_923725.1 119716760 4597865 2702462..2702821 1 NC_008699.1 KEGG: pac:PPA0820 electron transport protein; electron transport protein 2702821 4597865 Noca_2534 Nocardioides sp. JS614 electron transport protein YP_923725.1 2702462 D 196162 CDS YP_923726.1 119716761 4598392 complement(2702881..2703846) 1 NC_008699.1 KEGG: mpa:MAP2795 hypothetical protein; hypothetical protein 2703846 4598392 Noca_2535 Nocardioides sp. JS614 hypothetical protein YP_923726.1 2702881 R 196162 CDS YP_923727.1 119716762 4598393 complement(2703965..2704690) 1 NC_008699.1 TIGRFAM: 6-phosphogluconolactonase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: sco:SCO1939 putative 6-phosphogluconolactonase; 6-phosphogluconolactonase 2704690 4598393 Noca_2536 Nocardioides sp. JS614 6-phosphogluconolactonase YP_923727.1 2703965 R 196162 CDS YP_923728.1 119716763 4598394 complement(2704687..2705598) 1 NC_008699.1 KEGG: sma:SAV6312 oxppcycle protein; oxppcycle protein 2705598 4598394 Noca_2537 Nocardioides sp. JS614 oxppcycle protein YP_923728.1 2704687 R 196162 CDS YP_923729.1 119716764 4598395 complement(2705595..2707145) 1 NC_008699.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 2707145 4598395 Noca_2538 Nocardioides sp. JS614 glucose-6-phosphate 1-dehydrogenase YP_923729.1 2705595 R 196162 CDS YP_923730.1 119716765 4598396 complement(2707142..2708809) 1 NC_008699.1 PFAM: phosphoglucose isomerase (PGI); KEGG: lxx:Lxx11600 glucose-6-phosphate isomerase; glucose-6-phosphate isomerase 2708809 4598396 Noca_2539 Nocardioides sp. JS614 glucose-6-phosphate isomerase YP_923730.1 2707142 R 196162 CDS YP_923731.1 119716766 4598397 complement(2708806..2709918) 1 NC_008699.1 catalyzes the reversible formation of D-erythrose 4-phosphate and D-fructose 6-phosphate from sedoheptulose 7-phosphate and D-glyceraldehyde 3-phosphate; transaldolase 2709918 4598397 Noca_2540 Nocardioides sp. JS614 transaldolase YP_923731.1 2708806 R 196162 CDS YP_923732.1 119716767 4598398 complement(2709976..2712120) 1 NC_008699.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 2712120 4598398 Noca_2541 Nocardioides sp. JS614 transketolase YP_923732.1 2709976 R 196162 CDS YP_923733.1 119716768 4598399 2712282..2713226 1 NC_008699.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 2713226 4598399 Noca_2542 Nocardioides sp. JS614 protoheme IX farnesyltransferase YP_923733.1 2712282 D 196162 CDS YP_923734.1 119716769 4598400 complement(2713568..2714485) 1 NC_008699.1 PFAM: cytochrome oxidase assembly; KEGG: fra:Francci3_1653 cytochrome oxidase assembly; cytochrome oxidase assembly 2714485 4598400 Noca_2543 Nocardioides sp. JS614 cytochrome oxidase assembly YP_923734.1 2713568 R 196162 CDS YP_923735.1 119716770 4598401 complement(2714485..2715282) 1 NC_008699.1 PFAM: ABC-2 type transporter; KEGG: sco:SCO1929 putative integral membrane transport protein; ABC transporter 2715282 4598401 Noca_2544 Nocardioides sp. JS614 ABC transporter YP_923735.1 2714485 R 196162 CDS YP_923736.1 119716771 4598402 complement(2715279..2716226) 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO1928 putative ABC transporter, ATP-binding subunit; ABC transporter-like protein 2716226 4598402 Noca_2545 Nocardioides sp. JS614 ABC transporter-like protein YP_923736.1 2715279 R 196162 CDS YP_923737.1 119716772 4598403 complement(2716269..2716937) 1 NC_008699.1 KEGG: sil:SPO0301 glycerophosphoryl diester phosphodiesterase family protein; hypothetical protein 2716937 4598403 Noca_2546 Nocardioides sp. JS614 hypothetical protein YP_923737.1 2716269 R 196162 CDS YP_923738.1 119716773 4598404 complement(2716934..2717689) 1 NC_008699.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: fal:FRAAL0765 putative RNA-binding protein; PA-phosphatase-like phosphoesterase 2717689 4598404 Noca_2547 Nocardioides sp. JS614 PA-phosphatase-like phosphoesterase YP_923738.1 2716934 R 196162 CDS YP_923739.1 119716774 4598405 complement(2717811..2718671) 1 NC_008699.1 KEGG: rxy:Rxyl_1180 hypothetical protein; hypothetical protein 2718671 4598405 Noca_2548 Nocardioides sp. JS614 hypothetical protein YP_923739.1 2717811 R 196162 CDS YP_923740.1 119716775 4598406 2718818..2719540 1 NC_008699.1 PFAM: HMG-I and HMG-Y, DNA-binding domain protein; regulatory protein, ArsR; Helix-turn-helix, type 11 domain protein; KEGG: sma:SAV6324 DNA-binding protein; transcriptional regulator 2719540 4598406 Noca_2549 Nocardioides sp. JS614 transcriptional regulator YP_923740.1 2718818 D 196162 CDS YP_923741.1 119716776 4598407 2719537..2720955 1 NC_008699.1 TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: sco:SCO1925 hypothetical protein; FeS assembly protein SufB 2720955 4598407 Noca_2550 Nocardioides sp. JS614 FeS assembly protein SufB YP_923741.1 2719537 D 196162 CDS YP_923742.1 119716777 4598408 2721054..2722259 1 NC_008699.1 TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: sco:SCO1924 hypothetical protein; FeS assembly protein SufD 2722259 4598408 Noca_2551 Nocardioides sp. JS614 FeS assembly protein SufD YP_923742.1 2721054 D 196162 CDS YP_923743.1 119716778 4598409 2722256..2722606 1 NC_008699.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: sco:SCO1923 putative dioxygenase ferredoxin subunit; Rieske (2Fe-2S) domain-containing protein 2722606 4598409 Noca_2552 Nocardioides sp. JS614 Rieske (2Fe-2S) domain-containing protein YP_923743.1 2722256 D 196162 CDS YP_923744.1 119716779 4598410 2722603..2723364 1 NC_008699.1 KEGG: pac:PPA1546 ABC transporter ATP-binding protein; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase; FeS assembly ATPase SufC 2723364 4598410 Noca_2553 Nocardioides sp. JS614 FeS assembly ATPase SufC YP_923744.1 2722603 D 196162 CDS YP_923745.1 119716780 4598411 2723366..2724652 1 NC_008699.1 TIGRFAM: cysteine desulfurases, SufS subfamily; PFAM: aminotransferase, class V; KEGG: sma:SAV6329 putative cysteine desulfurase; SufS subfamily cysteine desulfurase 2724652 4598411 Noca_2554 Nocardioides sp. JS614 SufS subfamily cysteine desulfurase YP_923745.1 2723366 D 196162 CDS YP_923746.1 119716781 4598412 2724656..2725108 1 NC_008699.1 TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: fra:Francci3_1665 SUF system FeS assembly protein; NifU family SUF system FeS assembly protein 2725108 4598412 Noca_2555 Nocardioides sp. JS614 NifU family SUF system FeS assembly protein YP_923746.1 2724656 D 196162 CDS YP_923747.1 119716782 4598413 2725101..2725469 1 NC_008699.1 PFAM: protein of unknown function DUF59; KEGG: fra:Francci3_1666 protein of unknown function DUF59; hypothetical protein 2725469 4598413 Noca_2556 Nocardioides sp. JS614 hypothetical protein YP_923747.1 2725101 D 196162 CDS YP_923748.1 119716783 4598414 2725541..2726149 1 NC_008699.1 hypothetical protein 2726149 4598414 Noca_2557 Nocardioides sp. JS614 hypothetical protein YP_923748.1 2725541 D 196162 CDS YP_923749.1 119716784 4598415 complement(2726160..2726630) 1 NC_008699.1 PFAM: transcriptional regulator TrmB; KEGG: sco:SCO3632 hypothetical protein; transcriptional regulator TrmB 2726630 4598415 Noca_2558 Nocardioides sp. JS614 transcriptional regulator TrmB YP_923749.1 2726160 R 196162 CDS YP_923750.1 119716785 4598416 2726684..2727613 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV4541 putative ABC transporter ATP-binding protein; ABC transporter-like protein 2727613 4598416 Noca_2559 Nocardioides sp. JS614 ABC transporter-like protein YP_923750.1 2726684 D 196162 CDS YP_923751.1 119716786 4598417 2727613..2729184 1 NC_008699.1 KEGG: nfa:nfa24760 putative ABC transporter; putative ABC transporter 2729184 4598417 Noca_2560 Nocardioides sp. JS614 putative ABC transporter YP_923751.1 2727613 D 196162 CDS YP_923752.1 119716787 4598418 2729195..2730103 1 NC_008699.1 hypothetical protein 2730103 4598418 Noca_2561 Nocardioides sp. JS614 hypothetical protein YP_923752.1 2729195 D 196162 CDS YP_923753.1 119716788 4598419 complement(2730104..2731036) 1 NC_008699.1 PFAM: protein of unknown function, zinc metallopeptidase putative; KEGG: mmc:Mmcs_2304 protein of unknown function, zinc metallopeptidase putative; hypothetical protein 2731036 4598419 Noca_2562 Nocardioides sp. JS614 hypothetical protein YP_923753.1 2730104 R 196162 CDS YP_923754.1 119716789 4598420 2731175..2732773 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV6426 ABC transporter ATP-binding protein; ABC transporter-like protein 2732773 4598420 Noca_2563 Nocardioides sp. JS614 ABC transporter-like protein YP_923754.1 2731175 D 196162 CDS YP_923755.1 119716790 4598421 2732803..2733612 1 NC_008699.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: sco:SCO1838 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase 2733612 4598421 Noca_2564 Nocardioides sp. JS614 enoyl-CoA hydratase YP_923755.1 2732803 D 196162 CDS YP_923756.1 119716791 4598422 2733647..2735530 1 NC_008699.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: fra:Francci3_1676 ABC transporter related; ABC transporter-like protein 2735530 4598422 Noca_2565 Nocardioides sp. JS614 ABC transporter-like protein YP_923756.1 2733647 D 196162 CDS YP_923757.1 119716792 4598423 complement(2735553..2736467) 1 NC_008699.1 KEGG: pac:PPA1535 conserved membrane spanning protein; membrane spanning protein 2736467 4598423 Noca_2566 Nocardioides sp. JS614 membrane spanning protein YP_923757.1 2735553 R 196162 CDS YP_923758.1 119716793 4598424 2736512..2737513 1 NC_008699.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 2737513 moaA 4598424 moaA Nocardioides sp. JS614 molybdenum cofactor biosynthesis protein A YP_923758.1 2736512 D 196162 CDS YP_923759.1 119716794 4598425 complement(2737649..2737870) 1 NC_008699.1 KEGG: sma:SAV6456 hypothetical protein; hypothetical protein 2737870 4598425 Noca_2568 Nocardioides sp. JS614 hypothetical protein YP_923759.1 2737649 R 196162 CDS YP_923760.1 119716795 4598426 complement(2737995..2738330) 1 NC_008699.1 KEGG: fra:Francci3_1908 hypothetical protein; hypothetical protein 2738330 4598426 Noca_2569 Nocardioides sp. JS614 hypothetical protein YP_923760.1 2737995 R 196162 CDS YP_923761.1 119716796 4598427 2738386..2738598 1 NC_008699.1 PFAM: protein of unknown function DUF1458; KEGG: sco:SCO0915 hypothetical protein; hypothetical protein 2738598 4598427 Noca_2570 Nocardioides sp. JS614 hypothetical protein YP_923761.1 2738386 D 196162 CDS YP_923762.1 119716797 4598428 2738700..2739419 1 NC_008699.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: lxx:Lxx11740 3-oxoacyl-[acyl-carrier protein] reductase; 3-oxoacyl-ACP reductase 2739419 4598428 Noca_2571 Nocardioides sp. JS614 3-oxoacyl-ACP reductase YP_923762.1 2738700 D 196162 CDS YP_923763.1 119716798 4598429 2739422..2740195 1 NC_008699.1 Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase 2740195 4598429 Noca_2572 Nocardioides sp. JS614 enoyl-(acyl carrier protein) reductase YP_923763.1 2739422 D 196162 CDS YP_923764.1 119716799 4598430 2740188..2740772 1 NC_008699.1 PFAM: Phosphoglycerate mutase; KEGG: tfu:Tfu_0135 hypothetical protein; phosphoglycerate mutase 2740772 4598430 Noca_2573 Nocardioides sp. JS614 phosphoglycerate mutase YP_923764.1 2740188 D 196162 CDS YP_923765.1 119716800 4598431 complement(2740788..2742050) 1 NC_008699.1 KEGG: sco:SCO1808 putative phosphoserine phosphatase; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: amino acid-binding ACT domain protein; Haloacid dehalogenase domain protein hydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; phosphoserine phosphatase 2742050 4598431 Noca_2574 Nocardioides sp. JS614 phosphoserine phosphatase YP_923765.1 2740788 R 196162 CDS YP_923766.1 119716801 4597123 complement(2742047..2742784) 1 NC_008699.1 KEGG: sma:SAV6479 hypothetical protein; hypothetical protein 2742784 4597123 Noca_2575 Nocardioides sp. JS614 hypothetical protein YP_923766.1 2742047 R 196162 CDS YP_923767.1 119716802 4597124 2742839..2743633 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nfa:nfa42910 putative ABC transporter ATP-binding protein; ABC transporter-like protein 2743633 4597124 Noca_2576 Nocardioides sp. JS614 ABC transporter-like protein YP_923767.1 2742839 D 196162 CDS YP_923768.1 119716803 4597125 2743689..2744150 1 NC_008699.1 PFAM: protein of unknown function DUF107; KEGG: tfu:Tfu_2226 putative integral membrane protein; hypothetical protein 2744150 4597125 Noca_2577 Nocardioides sp. JS614 hypothetical protein YP_923768.1 2743689 D 196162 CDS YP_923769.1 119716804 4597126 2744186..2745316 1 NC_008699.1 PFAM: band 7 protein; KEGG: sma:SAV6482 secreted protein; SPFH domain-containing protein/band 7 family protein 2745316 4597126 Noca_2578 Nocardioides sp. JS614 SPFH domain-containing protein/band 7 family protein YP_923769.1 2744186 D 196162 CDS YP_923770.1 119716805 4597127 2745313..2746077 1 NC_008699.1 PFAM: protein of unknown function DUF81; KEGG: nfa:nfa3090 hypothetical protein; hypothetical protein 2746077 4597127 Noca_2579 Nocardioides sp. JS614 hypothetical protein YP_923770.1 2745313 D 196162 CDS YP_923771.1 119716806 4597128 complement(2746208..2746516) 1 NC_008699.1 hypothetical protein 2746516 4597128 Noca_2580 Nocardioides sp. JS614 hypothetical protein YP_923771.1 2746208 R 196162 CDS YP_923772.1 119716807 4597129 2746617..2747327 1 NC_008699.1 PFAM: nitroreductase; KEGG: fal:FRAAL2433 putative NADH dehydrogenase (H(2)O(2) forming NADH oxidase) (NADH:oxygen oxidoreductase); nitroreductase 2747327 4597129 Noca_2581 Nocardioides sp. JS614 nitroreductase YP_923772.1 2746617 D 196162 CDS YP_923773.1 119716808 4597130 complement(2747285..2748277) 1 NC_008699.1 KEGG: rha:RHA1_ro06611 hypothetical protein; hypothetical protein 2748277 4597130 Noca_2582 Nocardioides sp. JS614 hypothetical protein YP_923773.1 2747285 R 196162 CDS YP_923774.1 119716809 4597131 complement(2748274..2748939) 1 NC_008699.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: cya:CYA_0909 glycerophosphoryl diester phosphodiesterase family protein; glycerophosphoryl diester phosphodiesterase 2748939 4597131 Noca_2583 Nocardioides sp. JS614 glycerophosphoryl diester phosphodiesterase YP_923774.1 2748274 R 196162 CDS YP_923775.1 119716810 4597132 complement(2748959..2749672) 1 NC_008699.1 PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: mle:ML1573 possible amidotransferase; peptidase C26 2749672 4597132 Noca_2584 Nocardioides sp. JS614 peptidase C26 YP_923775.1 2748959 R 196162 CDS YP_923776.1 119716811 4597133 complement(2749674..2750453) 1 NC_008699.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sma:SAV6727 short chain dehydrogenase; short chain dehydrogenase 2750453 4597133 Noca_2585 Nocardioides sp. JS614 short chain dehydrogenase YP_923776.1 2749674 R 196162 CDS YP_923777.1 119716812 4597134 complement(2750524..2751903) 1 NC_008699.1 PFAM: aldehyde dehydrogenase; KEGG: mmc:Mmcs_2059 betaine-aldehyde dehydrogenase; betaine-aldehyde dehydrogenase 2751903 4597134 Noca_2586 Nocardioides sp. JS614 betaine-aldehyde dehydrogenase YP_923777.1 2750524 R 196162 CDS YP_923778.1 119716813 4597135 complement(2751904..2753298) 1 NC_008699.1 PFAM: glutamine synthetase, catalytic region; KEGG: rxy:Rxyl_3196 glutamate--ammonia ligase; L-glutamine synthetase 2753298 4597135 Noca_2587 Nocardioides sp. JS614 L-glutamine synthetase YP_923778.1 2751904 R 196162 CDS YP_923779.1 119716814 4597136 complement(2753307..2754053) 1 NC_008699.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; Helix-turn-helix, type 11 domain protein; KEGG: sma:SAV6724 GntR-family transcriptional regulator; GntR family transcriptional regulator 2754053 4597136 Noca_2588 Nocardioides sp. JS614 GntR family transcriptional regulator YP_923779.1 2753307 R 196162 CDS YP_923780.1 119716815 4597137 2754189..2755772 1 NC_008699.1 PFAM: amino acid permease-associated region; KEGG: sco:SCO4097 amino acid/metabolite permease; amino acid permease-associated protein 2755772 4597137 Noca_2589 Nocardioides sp. JS614 amino acid permease-associated protein YP_923780.1 2754189 D 196162 CDS YP_923781.1 119716816 4597138 2755773..2756690 1 NC_008699.1 PFAM: Choline/ethanolamine kinase; aminoglycoside phosphotransferase; KEGG: mlo:mll5367 hypothetical protein; choline/ethanolamine kinase 2756690 4597138 Noca_2590 Nocardioides sp. JS614 choline/ethanolamine kinase YP_923781.1 2755773 D 196162 CDS YP_923782.1 119716817 4597139 2756687..2759167 1 NC_008699.1 PFAM: FAD dependent oxidoreductase; glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein, C-terminal barrel; KEGG: bxe:Bxe_B1666 dehydrogenase; FAD dependent oxidoreductase 2759167 4597139 Noca_2591 Nocardioides sp. JS614 FAD dependent oxidoreductase YP_923782.1 2756687 D 196162 CDS YP_923783.1 119716818 4597140 2759254..2759676 1 NC_008699.1 KEGG: mmc:Mmcs_4977 hypothetical protein; hypothetical protein 2759676 4597140 Noca_2592 Nocardioides sp. JS614 hypothetical protein YP_923783.1 2759254 D 196162 CDS YP_923784.1 119716819 4597141 complement(2759654..2760604) 1 NC_008699.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: gsu:GSU0574 hypothetical protein; hypothetical protein 2760604 4597141 Noca_2593 Nocardioides sp. JS614 hypothetical protein YP_923784.1 2759654 R 196162 CDS YP_923785.1 119716820 4597142 2760838..2761881 1 NC_008699.1 KEGG: cel:C18H7.3 Collagen protein 102; hypothetical protein 2761881 4597142 Noca_2594 Nocardioides sp. JS614 hypothetical protein YP_923785.1 2760838 D 196162 CDS YP_923786.1 119716821 4597143 2761914..2762555 1 NC_008699.1 PFAM: peptidase C60, sortase A and B; KEGG: sco:SCO2841 secreted protein; peptidase C60, sortase A and B 2762555 4597143 Noca_2595 Nocardioides sp. JS614 peptidase C60, sortase A and B YP_923786.1 2761914 D 196162 CDS YP_923787.1 119716822 4597144 complement(2762533..2763138) 1 NC_008699.1 KEGG: cef:CE1098 hypothetical protein; hypothetical protein 2763138 4597144 Noca_2596 Nocardioides sp. JS614 hypothetical protein YP_923787.1 2762533 R 196162 CDS YP_923788.1 119716823 4597145 2763238..2764362 1 NC_008699.1 PFAM: luciferase family protein; KEGG: sma:SAV4763 monooxygenase; luciferase family protein 2764362 4597145 Noca_2597 Nocardioides sp. JS614 luciferase family protein YP_923788.1 2763238 D 196162 CDS YP_923789.1 119716824 4597146 2764359..2764958 1 NC_008699.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: sma:SAV4764 putative NAD(P)H-dependent FMN reductase; NADPH-dependent FMN reductase 2764958 4597146 Noca_2598 Nocardioides sp. JS614 NADPH-dependent FMN reductase YP_923789.1 2764359 D 196162 CDS YP_923790.1 119716825 4597147 complement(2764993..2765520) 1 NC_008699.1 PFAM: PEBP family protein; KEGG: tfu:Tfu_2116 YbhB and YbcL; PBP family phospholipid-binding protein 2765520 4597147 Noca_2599 Nocardioides sp. JS614 PBP family phospholipid-binding protein YP_923790.1 2764993 R 196162 CDS YP_923791.1 119716826 4597148 2765623..2766846 1 NC_008699.1 TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: sma:SAV6796 uroporphyrin-III C-methyltransferase / precorrin-2 oxidase / ferrochelatase; uroporphyrinogen-III C-methyltransferase 2766846 4597148 Noca_2600 Nocardioides sp. JS614 uroporphyrinogen-III C-methyltransferase YP_923791.1 2765623 D 196162 CDS YP_923792.1 119716827 4597149 2766846..2767649 1 NC_008699.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: tfu:Tfu_2264 putative rRNA methylase; tRNA/rRNA methyltransferase SpoU 2767649 4597149 Noca_2601 Nocardioides sp. JS614 tRNA/rRNA methyltransferase SpoU YP_923792.1 2766846 D 196162 CDS YP_923793.1 119716828 4597150 complement(2767771..2768370) 1 NC_008699.1 KEGG: pac:PPA1525 polypeptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase 2768370 4597150 Noca_2602 Nocardioides sp. JS614 peptide deformylase YP_923793.1 2767771 R 196162 CDS YP_923794.1 119716829 4597151 2768452..2769822 1 NC_008699.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rha:RHA1_ro06400 butyryl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2769822 4597151 Noca_2603 Nocardioides sp. JS614 acyl-CoA dehydrogenase domain-containing protein YP_923794.1 2768452 D 196162 CDS YP_923795.1 119716830 4597152 2769822..2771039 1 NC_008699.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pau:PA14_66040 putative acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2771039 4597152 Noca_2604 Nocardioides sp. JS614 acyl-CoA dehydrogenase domain-containing protein YP_923795.1 2769822 D 196162 CDS YP_923796.1 119716831 4597153 complement(2771049..2771708) 1 NC_008699.1 KEGG: hch:HCH_05781 hypothetical protein; hypothetical protein 2771708 4597153 Noca_2605 Nocardioides sp. JS614 hypothetical protein YP_923796.1 2771049 R 196162 CDS YP_923797.1 119716832 4597154 2771757..2773103 1 NC_008699.1 KEGG: rha:RHA1_ro05489 hypothetical protein; hypothetical protein 2773103 4597154 Noca_2606 Nocardioides sp. JS614 hypothetical protein YP_923797.1 2771757 D 196162 CDS YP_923798.1 119716833 4597155 complement(2773337..2774536) 1 NC_008699.1 TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase, C terminal domain protein; KEGG: rha:RHA1_ro05490 galactokinase; galactokinase 2774536 4597155 Noca_2607 Nocardioides sp. JS614 galactokinase YP_923798.1 2773337 R 196162 CDS YP_923799.1 119716834 4597156 2774579..2776015 1 NC_008699.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5-monophosphate dehydrogenase 2776015 4597156 Noca_2608 Nocardioides sp. JS614 inosine 5-monophosphate dehydrogenase YP_923799.1 2774579 D 196162 CDS YP_923800.1 119716835 4597157 complement(2776113..2777834) 1 NC_008699.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: mmc:Mmcs_1356 choline/carnitine/betaine transport; choline/carnitine/betaine transporter 2777834 4597157 Noca_2609 Nocardioides sp. JS614 choline/carnitine/betaine transporter YP_923800.1 2776113 R 196162 CDS YP_923801.1 119716836 4596414 complement(2777881..2778474) 1 NC_008699.1 PFAM: LysR, substrate-binding; KEGG: rha:RHA1_ro06801 possible transcriptional regulator, LysR family; substrate-binding protein LysR 2778474 4596414 Noca_2610 Nocardioides sp. JS614 substrate-binding protein LysR YP_923801.1 2777881 R 196162 CDS YP_923802.1 119716837 4596415 complement(2778653..2779249) 1 NC_008699.1 PFAM: Oxidoreductase FAD-binding domain protein; KEGG: sco:SCO7059 oxidoreductase; oxidoreductase FAD-binding subunit 2779249 4596415 Noca_2611 Nocardioides sp. JS614 oxidoreductase FAD-binding subunit YP_923802.1 2778653 R 196162 CDS YP_923803.1 119716838 4596417 2779772..2780149 1 NC_008699.1 hypothetical protein 2780149 4596417 Noca_2613 Nocardioides sp. JS614 hypothetical protein YP_923803.1 2779772 D 196162 CDS YP_923804.1 119716839 4596418 2780215..2781741 1 NC_008699.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: pac:PPA2190 membrane-associated protein; cell envelope-related transcriptional attenuator 2781741 4596418 Noca_2614 Nocardioides sp. JS614 cell envelope-related transcriptional attenuator YP_923804.1 2780215 D 196162 CDS YP_923805.1 119716840 4596419 complement(2781783..2783465) 1 NC_008699.1 PFAM: CHAP domain containing protein; KEGG: cch:Cag_1920 hypothetical protein; CHAP domain-containing protein 2783465 4596419 Noca_2615 Nocardioides sp. JS614 CHAP domain-containing protein YP_923805.1 2781783 R 196162 CDS YP_923806.1 119716841 4596420 2783645..2785351 1 NC_008699.1 activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 2785351 4596420 Noca_2616 Nocardioides sp. JS614 long-chain-fatty-acid--CoA ligase YP_923806.1 2783645 D 196162 CDS YP_923807.1 119716842 4596421 2785418..2786011 1 NC_008699.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sal:Sala_2035 hypothetical protein; N-acetyltransferase GCN5 2786011 4596421 Noca_2617 Nocardioides sp. JS614 N-acetyltransferase GCN5 YP_923807.1 2785418 D 196162 CDS YP_923808.1 119716843 4596422 2786064..2787896 1 NC_008699.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rha:RHA1_ro03747 probable long-chain-fatty-acid--CoA ligase; AMP-dependent synthetase and ligase 2787896 4596422 Noca_2618 Nocardioides sp. JS614 AMP-dependent synthetase and ligase YP_923808.1 2786064 D 196162 CDS YP_923809.1 119716844 4596424 2788233..2789567 1 NC_008699.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: tfu:Tfu_2787 hypothetical protein; hypothetical protein 2789567 4596424 Noca_2619 Nocardioides sp. JS614 hypothetical protein YP_923809.1 2788233 D 196162 CDS YP_923810.1 119716845 4596425 complement(2789573..2790814) 1 NC_008699.1 KEGG: sco:SCO0604 hypothetical protein; hypothetical protein 2790814 4596425 Noca_2620 Nocardioides sp. JS614 hypothetical protein YP_923810.1 2789573 R 196162 CDS YP_923811.1 119716846 4596426 complement(2790887..2791105) 1 NC_008699.1 KEGG: sma:SAV6637 hypothetical protein; hypothetical protein 2791105 4596426 Noca_2621 Nocardioides sp. JS614 hypothetical protein YP_923811.1 2790887 R 196162 CDS YP_923812.1 119716847 4596427 complement(2791139..2792086) 1 NC_008699.1 PFAM: aldo/keto reductase; KEGG: sma:SAV6640 oxidoreductase; aldo/keto reductase 2792086 4596427 Noca_2622 Nocardioides sp. JS614 aldo/keto reductase YP_923812.1 2791139 R 196162 CDS YP_923813.1 119716848 4596428 2792160..2792984 1 NC_008699.1 KEGG: fal:FRAAL4312 putative undecaprenol kinase (bacitracin resistance protein); TIGRFAM: putative undecaprenol kinase; PFAM: Bacitracin resistance protein BacA; undecaprenyl-diphosphatase 2792984 4596428 Noca_2623 Nocardioides sp. JS614 undecaprenyl-diphosphatase YP_923813.1 2792160 D 196162 CDS YP_923814.1 119716849 4596429 complement(2793021..2793992) 1 NC_008699.1 TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA family protein; KEGG: sma:SAV6643 putative ion transport protein; magnesium and cobalt transport protein CorA 2793992 4596429 Noca_2624 Nocardioides sp. JS614 magnesium and cobalt transport protein CorA YP_923814.1 2793021 R 196162 CDS YP_923815.1 119716850 4596430 2794025..2794753 1 NC_008699.1 PFAM: Phosphoglycerate mutase; KEGG: mmc:Mmcs_3157 phosphoglycerate mutase; phosphoglycerate mutase 2794753 4596430 Noca_2625 Nocardioides sp. JS614 phosphoglycerate mutase YP_923815.1 2794025 D 196162 CDS YP_923816.1 119716851 4596431 2794763..2795338 1 NC_008699.1 KEGG: sco:SCO1665 hypothetical protein; hypothetical protein 2795338 4596431 Noca_2626 Nocardioides sp. JS614 hypothetical protein YP_923816.1 2794763 D 196162 CDS YP_923817.1 119716852 4596432 2795335..2796108 1 NC_008699.1 KEGG: nfa:nfa29330 hypothetical protein; hypothetical protein 2796108 4596432 Noca_2627 Nocardioides sp. JS614 hypothetical protein YP_923817.1 2795335 D 196162 CDS YP_923818.1 119716853 4599907 2796186..2797379 1 NC_008699.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 2797379 4599907 Noca_2628 Nocardioides sp. JS614 cysteinyl-tRNA synthetase YP_923818.1 2796186 D 196162 CDS YP_923819.1 119716854 4599908 2797412..2797852 1 NC_008699.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nfa:nfa16520 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 2797852 4599908 Noca_2629 Nocardioides sp. JS614 glyoxalase/bleomycin resistance protein/dioxygenase YP_923819.1 2797412 D 196162 CDS YP_923820.1 119716855 4599909 complement(2797996..2798844) 1 NC_008699.1 PFAM: protein of unknown function DUF75; KEGG: sma:SAV6650 hypothetical protein; hypothetical protein 2798844 4599909 Noca_2630 Nocardioides sp. JS614 hypothetical protein YP_923820.1 2797996 R 196162 CDS YP_923821.1 119716856 4599910 2798981..2802715 1 NC_008699.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 2802715 metH 4599910 metH Nocardioides sp. JS614 B12-dependent methionine synthase YP_923821.1 2798981 D 196162 CDS YP_923822.1 119716857 4599911 2802708..2803364 1 NC_008699.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: lxx:Lxx08260 hydrolase; HAD family hydrolase 2803364 4599911 Noca_2632 Nocardioides sp. JS614 HAD family hydrolase YP_923822.1 2802708 D 196162 CDS YP_923823.1 119716858 4599912 2803498..2803920 1 NC_008699.1 hypothetical protein 2803920 4599912 Noca_2633 Nocardioides sp. JS614 hypothetical protein YP_923823.1 2803498 D 196162 CDS YP_923824.1 119716859 4599913 2803972..2805276 1 NC_008699.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: rha:RHA1_ro06091 sensor kinase, two-component system; ATPase domain-containing protein 2805276 4599913 Noca_2634 Nocardioides sp. JS614 ATPase domain-containing protein YP_923824.1 2803972 D 196162 CDS YP_923825.1 119716860 4599914 2805273..2805896 1 NC_008699.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: dge:Dgeo_0555 two component transcriptional regulator, LuxR family; response regulator receiver 2805896 4599914 Noca_2635 Nocardioides sp. JS614 response regulator receiver YP_923825.1 2805273 D 196162 CDS YP_923826.1 119716861 4599915 complement(2806014..2806913) 1 NC_008699.1 KEGG: fal:FRAAL2865 hypothetical protein; hypothetical protein 2806913 4599915 Noca_2636 Nocardioides sp. JS614 hypothetical protein YP_923826.1 2806014 R 196162 CDS YP_923827.1 119716862 4599916 2806993..2808129 1 NC_008699.1 PFAM: peptidase M50; KEGG: tfu:Tfu_1815 hypothetical protein; peptidase M50 2808129 4599916 Noca_2637 Nocardioides sp. JS614 peptidase M50 YP_923827.1 2806993 D 196162 CDS YP_923828.1 119716863 4599917 2808140..2809090 1 NC_008699.1 PFAM: Methyltransferase type 11; KEGG: fal:FRAAL2867 SAM-dependent methyltransferase involved in tRNA-Met maturation; tRNA (adenine-58-N(1)-) methyltransferase 2809090 4599917 Noca_2638 Nocardioides sp. JS614 tRNA (adenine-58-N(1)-) methyltransferase YP_923828.1 2808140 D 196162 CDS YP_923829.1 119716864 4599918 2809280..2811034 1 NC_008699.1 KEGG: sco:SCO1648 AAA ATPase; PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; vesicle-fusing ATPase 2811034 4599918 Noca_2639 Nocardioides sp. JS614 vesicle-fusing ATPase YP_923829.1 2809280 D 196162 CDS YP_923830.1 119716865 4599919 2811257..2811442 1 NC_008699.1 hypothetical protein 2811442 4599919 Noca_2640 Nocardioides sp. JS614 hypothetical protein YP_923830.1 2811257 D 196162 CDS YP_923831.1 119716866 4599920 complement(2811457..2811942) 1 NC_008699.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: vvy:VV2843 hypothetical protein; YbaK/prolyl-tRNA synthetase associated domain-containing protein 2811942 4599920 Noca_2641 Nocardioides sp. JS614 YbaK/prolyl-tRNA synthetase associated domain-containing protein YP_923831.1 2811457 R 196162 CDS YP_923832.1 119716867 4599921 complement(2811951..2812577) 1 NC_008699.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rha:RHA1_ro03999 hypothetical protein; type 11 methyltransferase 2812577 4599921 Noca_2642 Nocardioides sp. JS614 type 11 methyltransferase YP_923832.1 2811951 R 196162 CDS YP_923833.1 119716868 4599922 2812620..2814128 1 NC_008699.1 PFAM: protein of unknown function DUF245 domain protein; protein of unknown function DUF275 domain protein; KEGG: sma:SAV6678 proteasome component; hypothetical protein 2814128 4599922 Noca_2643 Nocardioides sp. JS614 hypothetical protein YP_923833.1 2812620 D 196162 CDS YP_923834.1 119716869 4599923 2814146..2814343 1 NC_008699.1 PFAM: protein of unknown function DUF797; KEGG: sma:SAV6679 hypothetical protein; hypothetical protein 2814343 4599923 Noca_2644 Nocardioides sp. JS614 hypothetical protein YP_923834.1 2814146 D 196162 CDS YP_923835.1 119716870 4599924 2814349..2815200 1 NC_008699.1 PFAM: 20S proteasome, A and B subunits; KEGG: sma:SAV6681 putative 20S proteasome beta-subunit; proteasome subunit beta 2815200 4599924 Noca_2645 Nocardioides sp. JS614 proteasome subunit beta YP_923835.1 2814349 D 196162 CDS YP_923836.1 119716871 4599925 2815205..2815972 1 NC_008699.1 PFAM: 20S proteasome, A and B subunits; KEGG: sma:SAV6682 putative 20S proteasome alpha-subunit; 20S proteasome, A and B subunits 2815972 4599925 Noca_2646 Nocardioides sp. JS614 20S proteasome, A and B subunits YP_923836.1 2815205 D 196162 CDS YP_923837.1 119716872 4599926 2816098..2817111 1 NC_008699.1 KEGG: mpa:MAP1247 hypothetical protein; hypothetical protein 2817111 4599926 Noca_2647 Nocardioides sp. JS614 hypothetical protein YP_923837.1 2816098 D 196162 CDS YP_923838.1 119716873 4599927 2817218..2818579 1 NC_008699.1 PFAM: protein of unknown function DUF245 domain protein; protein of unknown function DUF275 domain protein; KEGG: sma:SAV6685 proteasome component; hypothetical protein 2818579 4599927 Noca_2648 Nocardioides sp. JS614 hypothetical protein YP_923838.1 2817218 D 196162 CDS YP_923839.1 119716874 4599928 2818757..2819710 1 NC_008699.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: sma:SAV6686 FK-506 binding protein, peptidyl-prolyl cis-trans isomerase; FKBP-type peptidylprolyl isomerase 2819710 4599928 Noca_2649 Nocardioides sp. JS614 FKBP-type peptidylprolyl isomerase YP_923839.1 2818757 D 196162 CDS YP_923840.1 119716875 4599929 2819745..2820716 1 NC_008699.1 KEGG: tfu:Tfu_1771 similar to transcriptional regulator; transcriptional regulator-like protein 2820716 4599929 Noca_2650 Nocardioides sp. JS614 transcriptional regulator-like protein YP_923840.1 2819745 D 196162 CDS YP_923841.1 119716876 4599930 2820713..2821705 1 NC_008699.1 KEGG: fal:FRAAL2881 hypothetical protein; hypothetical protein 2821705 4599930 Noca_2651 Nocardioides sp. JS614 hypothetical protein YP_923841.1 2820713 D 196162 CDS YP_923842.1 119716877 4599931 2821740..2822039 1 NC_008699.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: fal:FRAAL3711 putative sec-independent protein translocase protein TatA/E; twin arginine-targeting protein translocase 2822039 4599931 Noca_2652 Nocardioides sp. JS614 twin arginine-targeting protein translocase YP_923842.1 2821740 D 196162 CDS YP_923843.1 119716878 4599932 2822053..2822907 1 NC_008699.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: sco:SCO1632 putative sec-independant protein translocase; Sec-independent protein translocase TatC 2822907 4599932 Noca_2653 Nocardioides sp. JS614 Sec-independent protein translocase TatC YP_923843.1 2822053 D 196162 CDS YP_923844.1 119716879 4599933 2822904..2823323 1 NC_008699.1 hypothetical protein 2823323 4599933 Noca_2654 Nocardioides sp. JS614 hypothetical protein YP_923844.1 2822904 D 196162 CDS YP_923845.1 119716880 4599934 2823344..2824219 1 NC_008699.1 PFAM: diacylglycerol kinase, catalytic region; KEGG: sma:SAV6694 hypothetical protein; diacylglycerol kinase catalytic subunit 2824219 4599934 Noca_2655 Nocardioides sp. JS614 diacylglycerol kinase catalytic subunit YP_923845.1 2823344 D 196162 CDS YP_923846.1 119716881 4599935 2824229..2827039 1 NC_008699.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DSH domain protein; SMART: DEAD-like helicases-like; KEGG: sco:SCO1631 putative helicase; DSH domain-containing protein 2827039 4599935 Noca_2656 Nocardioides sp. JS614 DSH domain-containing protein YP_923846.1 2824229 D 196162 CDS YP_923847.1 119716882 4599936 complement(2827012..2827704) 1 NC_008699.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: fal:FRAAL4276 hypothetical protein; NAD-dependent epimerase/dehydratase 2827704 4599936 Noca_2657 Nocardioides sp. JS614 NAD-dependent epimerase/dehydratase YP_923847.1 2827012 R 196162 CDS YP_923848.1 119716883 4599937 2827793..2828938 1 NC_008699.1 KEGG: mlo:mll1182 probable dimethylaniline monooxygenase; putative dimethylaniline monooxygenase 2828938 4599937 Noca_2658 Nocardioides sp. JS614 putative dimethylaniline monooxygenase YP_923848.1 2827793 D 196162 CDS YP_923849.1 119716884 4599938 complement(2829167..2830072) 1 NC_008699.1 PFAM: 5'-3' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2; KEGG: sma:SAV6714 putative 5'-3' exonuclease; 5'-3' exonuclease 2830072 4599938 Noca_2659 Nocardioides sp. JS614 5'-3' exonuclease YP_923849.1 2829167 R 196162 CDS YP_923850.1 119716885 4599939 2830131..2830583 1 NC_008699.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: sco:SCO1425 putative AsnC-family transcriptional regulatory protein; AsnC family transcriptional regulator 2830583 4599939 Noca_2660 Nocardioides sp. JS614 AsnC family transcriptional regulator YP_923850.1 2830131 D 196162 CDS YP_923851.1 119716886 4599940 complement(2830608..2832014) 1 NC_008699.1 PFAM: Radical SAM domain protein; KEGG: mxa:MXAN_4699 putative L-lysine 2,3-aminomutase; L-lysine 2,3-aminomutase 2832014 4599940 Noca_2661 Nocardioides sp. JS614 L-lysine 2,3-aminomutase YP_923851.1 2830608 R 196162 CDS YP_923852.1 119716887 4599941 2832169..2833230 1 NC_008699.1 KEGG: sth:STH34 Zn-dependent alcohol dehydrogenase and related dehydrogenase; L-erythro-3,5-diaminohexanoate dehydrogenase 2833230 4599941 Noca_2662 Nocardioides sp. JS614 L-erythro-3,5-diaminohexanoate dehydrogenase YP_923852.1 2832169 D 196162 CDS YP_923853.1 119716888 4599942 2833227..2834807 1 NC_008699.1 KEGG: sth:STH37 lysine 5,6-aminomutase alpha subunit; D-lysine 5,6-aminomutase subunit alpha / beta-lysine 5,6-aminomutase subunit alpha 2834807 4599942 Noca_2663 Nocardioides sp. JS614 D-lysine 5,6-aminomutase subunit alpha / beta-lysine 5,6-aminomutase subunit alpha YP_923853.1 2833227 D 196162 CDS YP_923854.1 119716889 4599943 2834804..2835559 1 NC_008699.1 PFAM: cobalamin B12-binding domain protein; KEGG: rfr:Rfer_3887 cobalamin B12-binding; beta-lysine 5,6-aminomutase subunit beta / D-lysine 5,6-aminomutase subunit beta 2835559 4599943 Noca_2664 Nocardioides sp. JS614 beta-lysine 5,6-aminomutase subunit beta / D-lysine 5,6-aminomutase subunit beta YP_923854.1 2834804 D 196162 CDS YP_923855.1 119716890 4599944 2835556..2835957 1 NC_008699.1 KEGG: rha:RHA1_ro05324 possible acyl-CoA hydrolase; 3-aminobutyryl-CoA ammonia-lyase 2835957 4599944 Noca_2665 Nocardioides sp. JS614 3-aminobutyryl-CoA ammonia-lyase YP_923855.1 2835556 D 196162 CDS YP_923856.1 119716891 4598317 2836431..2838086 1 NC_008699.1 TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: fal:FRAAL3769 putative polyprenol-phosphate-mannosyl transferase; apolipoprotein N-acyltransferase 2838086 4598317 Noca_2666 Nocardioides sp. JS614 apolipoprotein N-acyltransferase YP_923856.1 2836431 D 196162 CDS YP_923857.1 119716892 4598318 2838079..2838852 1 NC_008699.1 PFAM: glycosyl transferase, family 2; KEGG: sco:SCO1423 glycosyl transferase; dolichyl-phosphate beta-D-mannosyltransferase 2838852 4598318 Noca_2667 Nocardioides sp. JS614 dolichyl-phosphate beta-D-mannosyltransferase YP_923857.1 2838079 D 196162 CDS YP_923858.1 119716893 4598319 2838849..2839313 1 NC_008699.1 PFAM: FxsA cytoplasmic membrane protein; KEGG: pau:PA14_57030 hypothetical protein; FxsA cytoplasmic membrane protein 2839313 4598319 Noca_2668 Nocardioides sp. JS614 FxsA cytoplasmic membrane protein YP_923858.1 2838849 D 196162 CDS YP_923859.1 119716894 4598320 complement(2839317..2839703) 1 NC_008699.1 KEGG: pac:PPA1223 hypothetical protein; hypothetical protein 2839703 4598320 Noca_2669 Nocardioides sp. JS614 hypothetical protein YP_923859.1 2839317 R 196162 CDS YP_923860.1 119716895 4598321 complement(2839926..2841302) 1 NC_008699.1 PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO1420 putative integral membrane protein; major facilitator transporter 2841302 4598321 Noca_2670 Nocardioides sp. JS614 major facilitator transporter YP_923860.1 2839926 R 196162 CDS YP_923861.1 119716896 4598322 complement(2841299..2842123) 1 NC_008699.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sma:SAV6927 putative glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 2842123 4598322 Noca_2671 Nocardioides sp. JS614 glycerophosphoryl diester phosphodiesterase YP_923861.1 2841299 R 196162 CDS YP_923862.1 119716897 4598323 complement(2842507..2844033) 1 NC_008699.1 PFAM: helix-turn-helix domain protein; EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: sco:SCO5998 putative UDP-N-acetylglucosamine transferase; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2844033 4598323 Noca_2672 Nocardioides sp. JS614 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_923862.1 2842507 R 196162 CDS YP_923863.1 119716898 4598324 2844127..2845143 1 NC_008699.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: lxx:Lxx23600 alcohol dehydrogenase; alcohol dehydrogenase 2845143 4598324 Noca_2673 Nocardioides sp. JS614 alcohol dehydrogenase YP_923863.1 2844127 D 196162 CDS YP_923864.1 119716899 4598325 2845594..2847291 1 NC_008699.1 KEGG: tfu:Tfu_1967 hypothetical protein; hypothetical protein 2847291 4598325 Noca_2674 Nocardioides sp. JS614 hypothetical protein YP_923864.1 2845594 D 196162 CDS YP_923865.1 119716900 4598326 2847756..2848508 1 NC_008699.1 PFAM: pentapeptide repeat protein; pentapeptide repeat-containing protein 2848508 4598326 Noca_2675 Nocardioides sp. JS614 pentapeptide repeat-containing protein YP_923865.1 2847756 D 196162 CDS YP_923866.1 119716901 4598327 complement(2848519..2848719) 1 NC_008699.1 hypothetical protein 2848719 4598327 Noca_2676 Nocardioides sp. JS614 hypothetical protein YP_923866.1 2848519 R 196162 CDS YP_923867.1 119716902 4598328 2848814..2849257 1 NC_008699.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: nfa:nfa43930 putative transcriptional regulator; AraC family transcriptional regulator 2849257 4598328 Noca_2677 Nocardioides sp. JS614 AraC family transcriptional regulator YP_923867.1 2848814 D 196162 CDS YP_923868.1 119716903 4598329 2849268..2849678 1 NC_008699.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sco:SCO4436 lyase; glyoxalase/bleomycin resistance protein/dioxygenase 2849678 4598329 Noca_2678 Nocardioides sp. JS614 glyoxalase/bleomycin resistance protein/dioxygenase YP_923868.1 2849268 D 196162 CDS YP_923869.1 119716904 4598330 2849706..2852093 1 NC_008699.1 PFAM: ABC transporter related; KEGG: rha:RHA1_ro03835 UvrABC system protein A; ABC transporter-like protein 2852093 4598330 Noca_2679 Nocardioides sp. JS614 ABC transporter-like protein YP_923869.1 2849706 D 196162 CDS YP_923870.1 119716905 4598331 complement(2852274..2852570) 1 NC_008699.1 PFAM: plasmid stabilization system; KEGG: fal:FRAAL1798 hypothetical protein; plasmid stabilization system protein 2852570 4598331 Noca_2680 Nocardioides sp. JS614 plasmid stabilization system protein YP_923870.1 2852274 R 196162 CDS YP_923871.1 119716906 4598332 complement(2852567..2852851) 1 NC_008699.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: fra:Francci3_2678 prevent-host-death protein; prevent-host-death family protein 2852851 4598332 Noca_2681 Nocardioides sp. JS614 prevent-host-death family protein YP_923871.1 2852567 R 196162 CDS YP_923872.1 119716907 4598333 2852923..2853420 1 NC_008699.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rha:RHA1_ro03900 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 2853420 4598333 Noca_2682 Nocardioides sp. JS614 glyoxalase/bleomycin resistance protein/dioxygenase YP_923872.1 2852923 D 196162 CDS YP_923873.1 119716908 4598334 complement(2853417..2854313) 1 NC_008699.1 PFAM: luciferase family protein; KEGG: nfa:nfa22130 putative monooxygenase; luciferase family protein 2854313 4598334 Noca_2683 Nocardioides sp. JS614 luciferase family protein YP_923873.1 2853417 R 196162 CDS YP_923874.1 119716909 4598335 complement(2854324..2855061) 1 NC_008699.1 KEGG: rha:RHA1_ro02398 possible membrane protein; hypothetical protein 2855061 4598335 Noca_2684 Nocardioides sp. JS614 hypothetical protein YP_923874.1 2854324 R 196162 CDS YP_923875.1 119716910 4598336 2855117..2855341 1 NC_008699.1 hypothetical protein 2855341 4598336 Noca_2685 Nocardioides sp. JS614 hypothetical protein YP_923875.1 2855117 D 196162 CDS YP_923876.1 119716911 4598337 2855338..2855775 1 NC_008699.1 KEGG: nfa:nfa35130 hypothetical protein; hypothetical protein 2855775 4598337 Noca_2686 Nocardioides sp. JS614 hypothetical protein YP_923876.1 2855338 D 196162 CDS YP_923877.1 119716912 4598338 2855857..2856528 1 NC_008699.1 PFAM: YhhN family protein; KEGG: sma:SAV6447 hypothetical protein; YhhN family protein 2856528 4598338 Noca_2687 Nocardioides sp. JS614 YhhN family protein YP_923877.1 2855857 D 196162 CDS YP_923878.1 119716913 4598339 2856539..2857375 1 NC_008699.1 PFAM: aldo/keto reductase; KEGG: sco:SCO7356 oxidoreductase; aldo/keto reductase 2857375 4598339 Noca_2688 Nocardioides sp. JS614 aldo/keto reductase YP_923878.1 2856539 D 196162 CDS YP_923879.1 119716914 4598340 2857372..2858454 1 NC_008699.1 PFAM: alanine racemase domain protein; KEGG: cgb:cg2890 putative amino acid processing enzyme; alanine racemase domain-containing protein 2858454 4598340 Noca_2689 Nocardioides sp. JS614 alanine racemase domain-containing protein YP_923879.1 2857372 D 196162 CDS YP_923880.1 119716915 4598341 2858478..2859155 1 NC_008699.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: rha:RHA1_ro06901 peptidylprolyl isomerase; cyclophilin type peptidyl-prolyl cis-trans isomerase 2859155 4598341 Noca_2690 Nocardioides sp. JS614 cyclophilin type peptidyl-prolyl cis-trans isomerase YP_923880.1 2858478 D 196162 CDS YP_923881.1 119716916 4598342 complement(2859186..2859386) 1 NC_008699.1 KEGG: mmc:Mmcs_0605 short-chain dehydrogenase/reductase SDR; hypothetical protein 2859386 4598342 Noca_2691 Nocardioides sp. JS614 hypothetical protein YP_923881.1 2859186 R 196162 CDS YP_923882.1 119716917 4598343 complement(2859386..2859871) 1 NC_008699.1 PFAM: OsmC family protein; KEGG: sma:SAV2602 hypothetical protein; OsmC family protein 2859871 4598343 Noca_2692 Nocardioides sp. JS614 OsmC family protein YP_923882.1 2859386 R 196162 CDS YP_923883.1 119716918 4598344 2859983..2860267 1 NC_008699.1 hypothetical protein 2860267 4598344 Noca_2693 Nocardioides sp. JS614 hypothetical protein YP_923883.1 2859983 D 196162 CDS YP_923884.1 119716919 4598345 complement(2860414..2861682) 1 NC_008699.1 KEGG: sma:SAV7509 serine/threonine protein kinase; serine/threonine protein kinase 2861682 4598345 Noca_2694 Nocardioides sp. JS614 serine/threonine protein kinase YP_923884.1 2860414 R 196162 CDS YP_923885.1 119716920 4598346 complement(2861796..2863508) 1 NC_008699.1 PFAM: aminotransferase, class V; KEGG: dra:DR0028 aminotransferase, putative; class V aminotransferase 2863508 4598346 Noca_2695 Nocardioides sp. JS614 class V aminotransferase YP_923885.1 2861796 R 196162 CDS YP_923886.1 119716921 4598347 complement(2863560..2865305) 1 NC_008699.1 KEGG: aba:Acid345_3562 hypothetical protein; hypothetical protein 2865305 4598347 Noca_2696 Nocardioides sp. JS614 hypothetical protein YP_923886.1 2863560 R 196162 CDS YP_923887.1 119716922 4598348 2865508..2867979 1 NC_008699.1 TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: fal:FRAAL1606 putative aminopeptidase; aminopeptidase N 2867979 4598348 Noca_2697 Nocardioides sp. JS614 aminopeptidase N YP_923887.1 2865508 D 196162 CDS YP_923888.1 119716923 4598349 2867976..2868827 1 NC_008699.1 PFAM: formate dehydrogenase, subunit FdhD; KEGG: rxy:Rxyl_0145 formate dehydrogenase family accessory protein FdhD; formate dehydrogenase subunit FdhD 2868827 4598349 Noca_2698 Nocardioides sp. JS614 formate dehydrogenase subunit FdhD YP_923888.1 2867976 D 196162 CDS YP_923889.1 119716924 4598350 complement(2868856..2870211) 1 NC_008699.1 KEGG: mpa:MAP4216 hypothetical protein; hypothetical protein 2870211 4598350 Noca_2699 Nocardioides sp. JS614 hypothetical protein YP_923889.1 2868856 R 196162 CDS YP_923890.1 119716925 4598351 complement(2870336..2870845) 1 NC_008699.1 KEGG: pac:PPA0986 hypothetical protein; hypothetical protein 2870845 4598351 Noca_2700 Nocardioides sp. JS614 hypothetical protein YP_923890.1 2870336 R 196162 CDS YP_923891.1 119716926 4598352 2870929..2872089 1 NC_008699.1 TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: sma:SAV7055 putative exonuclease; exodeoxyribonuclease I subunit D 2872089 4598352 Noca_2701 Nocardioides sp. JS614 exodeoxyribonuclease I subunit D YP_923891.1 2870929 D 196162 CDS YP_923892.1 119716927 4598353 2872086..2874731 1 NC_008699.1 KEGG: sma:SAV7056 putative exonuclease; putative exonuclease 2874731 4598353 Noca_2702 Nocardioides sp. JS614 putative exonuclease YP_923892.1 2872086 D 196162 CDS YP_923893.1 119716928 4598354 2874765..2876309 1 NC_008699.1 PFAM: peptidase U62, modulator of DNA gyrase; KEGG: sma:SAV6461 modulator of DNA gyrase; C69 family peptidase 2876309 4598354 Noca_2703 Nocardioides sp. JS614 C69 family peptidase YP_923893.1 2874765 D 196162 CDS YP_923894.1 119716929 4597272 2876309..2877703 1 NC_008699.1 KEGG: sco:SCO1817 hypothetical protein; hypothetical protein 2877703 4597272 Noca_2704 Nocardioides sp. JS614 hypothetical protein YP_923894.1 2876309 D 196162 CDS YP_923895.1 119716930 4597273 complement(2877672..2879150) 1 NC_008699.1 PFAM: CHAD domain containing protein; adenylate cyclase; KEGG: fal:FRAAL2447 hypothetical protein; putative adenylate cyclase domain; CHAD domain-containing protein 2879150 4597273 Noca_2705 Nocardioides sp. JS614 CHAD domain-containing protein YP_923895.1 2877672 R 196162 CDS YP_923896.1 119716931 4597274 complement(2879159..2879509) 1 NC_008699.1 hypothetical protein 2879509 4597274 Noca_2706 Nocardioides sp. JS614 hypothetical protein YP_923896.1 2879159 R 196162 CDS YP_923897.1 119716932 4597275 2879678..2880208 1 NC_008699.1 hypothetical protein 2880208 4597275 Noca_2707 Nocardioides sp. JS614 hypothetical protein YP_923897.1 2879678 D 196162 CDS YP_923898.1 119716933 4597276 complement(2880242..2881495) 1 NC_008699.1 PFAM: beta-lactamase; KEGG: sma:SAV4283 beta-lactamase; beta-lactamase 2881495 4597276 Noca_2708 Nocardioides sp. JS614 beta-lactamase YP_923898.1 2880242 R 196162 CDS YP_923899.1 119716934 4597277 complement(2881583..2884498) 1 NC_008699.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 2884498 4597277 Noca_2709 Nocardioides sp. JS614 glycine dehydrogenase YP_923899.1 2881583 R 196162 CDS YP_923900.1 119716935 4597278 complement(2884706..2885302) 1 NC_008699.1 SMART: regulatory protein, MerR; KEGG: pac:PPA1087 predicted transcriptional regulator; regulatory protein MerR 2885302 4597278 Noca_2710 Nocardioides sp. JS614 regulatory protein MerR YP_923900.1 2884706 R 196162 CDS YP_923901.1 119716936 4597279 complement(2885615..2886094) 1 NC_008699.1 PFAM: protein of unknown function DUF151; KEGG: sco:SCO1382 hypothetical protein; hypothetical protein 2886094 4597279 Noca_2711 Nocardioides sp. JS614 hypothetical protein YP_923901.1 2885615 R 196162 CDS YP_923902.1 119716937 4597280 complement(2886249..2886989) 1 NC_008699.1 PFAM: regulatory protein, MerR; KEGG: rha:RHA1_ro00905 possible transcriptional regulator; regulatory protein MerR 2886989 4597280 Noca_2712 Nocardioides sp. JS614 regulatory protein MerR YP_923902.1 2886249 R 196162 CDS YP_923903.1 119716938 4597281 complement(2886998..2887528) 1 NC_008699.1 PFAM: Forkhead-associated protein; KEGG: fra:Francci3_1468 FHA domain containing protein; forkhead-associated protein 2887528 4597281 Noca_2713 Nocardioides sp. JS614 forkhead-associated protein YP_923903.1 2886998 R 196162 CDS YP_923904.1 119716939 4597282 complement(2887635..2888021) 1 NC_008699.1 TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; KEGG: fra:Francci3_1467 glycine cleavage system H protein; glycine cleavage system H protein 2888021 4597282 Noca_2714 Nocardioides sp. JS614 glycine cleavage system H protein YP_923904.1 2887635 R 196162 CDS YP_923905.1 119716940 4597283 complement(2888082..2888819) 1 NC_008699.1 PFAM: protein of unknown function DUF881; KEGG: sco:SCO1385 hypothetical protein; hypothetical protein 2888819 4597283 Noca_2715 Nocardioides sp. JS614 hypothetical protein YP_923905.1 2888082 R 196162 CDS YP_923906.1 119716941 4597284 complement(2888812..2889144) 1 NC_008699.1 PFAM: protein of unknown function DUF1290; KEGG: sco:SCO1386 integral membrane protein; hypothetical protein 2889144 4597284 Noca_2716 Nocardioides sp. JS614 hypothetical protein YP_923906.1 2888812 R 196162 CDS YP_923907.1 119716942 4597285 complement(2889141..2890001) 1 NC_008699.1 PFAM: protein of unknown function DUF881; KEGG: sco:SCO1387 membrane associated protein; hypothetical protein 2890001 4597285 Noca_2717 Nocardioides sp. JS614 hypothetical protein YP_923907.1 2889141 R 196162 CDS YP_923908.1 119716943 4597286 complement(2889994..2890596) 1 NC_008699.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: tfu:Tfu_1393 putative CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyl-transferase; CDP-diacylglycerol-phosphatidylglycerol phosphatidyltransferase 2890596 4597286 Noca_2718 Nocardioides sp. JS614 CDP-diacylglycerol-phosphatidylglycerol phosphatidyltransferase YP_923908.1 2889994 R 196162 CDS YP_923909.1 119716944 4597287 complement(2890680..2891729) 1 NC_008699.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; KEGG: fra:Francci3_3000 protein of unknown function DUF21; hypothetical protein 2891729 4597287 Noca_2719 Nocardioides sp. JS614 hypothetical protein YP_923909.1 2890680 R 196162 CDS YP_923910.1 119716945 4597288 complement(2891726..2893081) 1 NC_008699.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: fal:FRAAL4939 hypothetical protein; hypothetical protein 2893081 4597288 Noca_2720 Nocardioides sp. JS614 hypothetical protein YP_923910.1 2891726 R 196162 CDS YP_923911.1 119716946 4597289 2893171..2894889 1 NC_008699.1 KEGG: mxa:MXAN_6410 hypothetical protein; hypothetical protein 2894889 4597289 Noca_2721 Nocardioides sp. JS614 hypothetical protein YP_923911.1 2893171 D 196162 CDS YP_923912.1 119716947 4597290 2894895..2896133 1 NC_008699.1 PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_4681 protein of unknown function DUF1501; hypothetical protein 2896133 4597290 Noca_2722 Nocardioides sp. JS614 hypothetical protein YP_923912.1 2894895 D 196162 CDS YP_923913.1 119716948 4597291 complement(2896144..2897091) 1 NC_008699.1 KEGG: bxe:Bxe_A1864 hypothetical protein; hypothetical protein 2897091 4597291 Noca_2723 Nocardioides sp. JS614 hypothetical protein YP_923913.1 2896144 R 196162 CDS YP_923914.1 119716949 4597292 complement(2897503..2898606) 1 NC_008699.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: rha:RHA1_ro04690 probable 2-nitropropane dioxygenase; 2-nitropropane dioxygenase 2898606 4597292 Noca_2724 Nocardioides sp. JS614 2-nitropropane dioxygenase YP_923914.1 2897503 R 196162 CDS YP_923915.1 119716950 4597293 complement(2898636..2900282) 1 NC_008699.1 activates fatty acids by binding to coenzyme A; in Mycobacterium may be involved in virulence; acyl-CoA synthetase 2900282 4597293 Noca_2725 Nocardioides sp. JS614 acyl-CoA synthetase YP_923915.1 2898636 R 196162 CDS YP_923916.1 119716951 4597294 2900330..2901130 1 NC_008699.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2901130 4597294 Noca_2726 Nocardioides sp. JS614 enoyl-CoA hydratase YP_923916.1 2900330 D 196162 CDS YP_923917.1 119716952 4597295 2901179..2902021 1 NC_008699.1 KEGG: fal:FRAAL3586 hypothetical protein; hypothetical protein 2902021 4597295 Noca_2727 Nocardioides sp. JS614 hypothetical protein YP_923917.1 2901179 D 196162 CDS YP_923918.1 119716953 4597296 complement(2902126..2902317) 1 NC_008699.1 PFAM: regulatory protein, LacI; KEGG: rxy:Rxyl_2600 transcriptional regulator, LacI family; regulatory protein LacI 2902317 4597296 Noca_2728 Nocardioides sp. JS614 regulatory protein LacI YP_923918.1 2902126 R 196162 CDS YP_923919.1 119716954 4597297 complement(2902360..2904039) 1 NC_008699.1 activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 2904039 4597297 Noca_2729 Nocardioides sp. JS614 acyl-CoA synthetase YP_923919.1 2902360 R 196162 CDS YP_923920.1 119716955 4597298 complement(2904052..2904816) 1 NC_008699.1 hypothetical protein 2904816 4597298 Noca_2730 Nocardioides sp. JS614 hypothetical protein YP_923920.1 2904052 R 196162 CDS YP_923921.1 119716956 4597299 complement(2904955..2906013) 1 NC_008699.1 PFAM: luciferase family protein; KEGG: rha:RHA1_ro04686 probable 5,10-methylenetetrahydromethanopterin reductase; luciferase family protein 2906013 4597299 Noca_2731 Nocardioides sp. JS614 luciferase family protein YP_923921.1 2904955 R 196162 CDS YP_923922.1 119716957 4597300 2906075..2907034 1 NC_008699.1 PFAM: protein of unknown function DUF35; KEGG: nfa:nfa5230 hypothetical protein; hypothetical protein 2907034 4597300 Noca_2732 Nocardioides sp. JS614 hypothetical protein YP_923922.1 2906075 D 196162 CDS YP_923923.1 119716958 4597301 2907055..2908122 1 NC_008699.1 KEGG: mmc:Mmcs_4635 lipid-transfer protein; lipid-transfer protein 2908122 4597301 Noca_2733 Nocardioides sp. JS614 lipid-transfer protein YP_923923.1 2907055 D 196162 CDS YP_923924.1 119716959 4597302 2908122..2909288 1 NC_008699.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 2909288 4597302 Noca_2734 Nocardioides sp. JS614 acetyl-CoA acetyltransferase YP_923924.1 2908122 D 196162 CDS YP_923925.1 119716960 4597303 2909306..2909620 1 NC_008699.1 PFAM: helix-turn-helix domain protein; KEGG: sco:SCO7279 DNA-binding protein; helix-turn-helix domain-containing protein 2909620 4597303 Noca_2735 Nocardioides sp. JS614 helix-turn-helix domain-containing protein YP_923925.1 2909306 D 196162 CDS YP_923926.1 119716961 4597304 complement(2909633..2910235) 1 NC_008699.1 PFAM: peptidase S14, ClpP; KEGG: sco:SCO7280 putative ATP-dependent Clp protease proteolytic subunit 2; ATP-dependent Clp protease proteolytic subunit ClpP 2910235 4597304 Noca_2736 Nocardioides sp. JS614 ATP-dependent Clp protease proteolytic subunit ClpP YP_923926.1 2909633 R 196162 CDS YP_923927.1 119716962 4597305 complement(2910241..2910843) 1 NC_008699.1 PFAM: peptidase S14, ClpP; KEGG: sco:SCO7281 putative ATP-dependent Clp protease proteolytic subunit 1; ClpP1 peptidase 2910843 4597305 Noca_2737 Nocardioides sp. JS614 ClpP1 peptidase YP_923927.1 2910241 R 196162 CDS YP_923928.1 119716963 4597306 2910947..2911714 1 NC_008699.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: lxx:Lxx14830 methionine aminopeptidase; methionine aminopeptidase 2911714 4597306 Noca_2738 Nocardioides sp. JS614 methionine aminopeptidase YP_923928.1 2910947 D 196162 CDS YP_923929.1 119716964 4597307 complement(2911727..2912968) 1 NC_008699.1 KEGG: rha:RHA1_ro04679 cytochrome P450 CYP125; cytochrome P450 CYP125 2912968 4597307 Noca_2739 Nocardioides sp. JS614 cytochrome P450 CYP125 YP_923929.1 2911727 R 196162 CDS YP_923930.1 119716965 4597308 2913079..2914245 1 NC_008699.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 2914245 4597308 Noca_2740 Nocardioides sp. JS614 acetyl-CoA acetyltransferase YP_923930.1 2913079 D 196162 CDS YP_923931.1 119716966 4597309 complement(2914287..2915168) 1 NC_008699.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro04654 3-oxoacyl-[acyl-carrier-protein] reductase; short chain dehydrogenase 2915168 4597309 Noca_2741 Nocardioides sp. JS614 short chain dehydrogenase YP_923931.1 2914287 R 196162 CDS YP_923932.1 119716967 4597310 complement(2915168..2915926) 1 NC_008699.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro04653 short chain dehydrogenase; short chain dehydrogenase 2915926 4597310 Noca_2742 Nocardioides sp. JS614 short chain dehydrogenase YP_923932.1 2915168 R 196162 CDS YP_923933.1 119716968 4597311 2915976..2916755 1 NC_008699.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2916755 4597311 Noca_2743 Nocardioides sp. JS614 enoyl-CoA hydratase YP_923933.1 2915976 D 196162 CDS YP_923934.1 119716969 4598778 2916752..2917633 1 NC_008699.1 PFAM: coenzyme A transferase; KEGG: sma:SAV6202 putative glutaconate CoA-transferase, subunit A; coenzyme A transferase 2917633 4598778 Noca_2744 Nocardioides sp. JS614 coenzyme A transferase YP_923934.1 2916752 D 196162 CDS YP_923935.1 119716970 4598779 2917630..2918400 1 NC_008699.1 KEGG: nfa:nfa5080 putative CoA transferase beta subunit; putative CoA transferase subunit beta 2918400 4598779 Noca_2745 Nocardioides sp. JS614 putative CoA transferase subunit beta YP_923935.1 2917630 D 196162 CDS YP_923936.1 119716971 4598780 2918393..2919481 1 NC_008699.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: mmc:Mmcs_4686 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 2919481 4598780 Noca_2746 Nocardioides sp. JS614 2-nitropropane dioxygenase YP_923936.1 2918393 D 196162 CDS YP_923937.1 119716972 4598781 complement(2919478..2920140) 1 NC_008699.1 KEGG: rxy:Rxyl_3099 hypothetical protein; hypothetical protein 2920140 4598781 Noca_2747 Nocardioides sp. JS614 hypothetical protein YP_923937.1 2919478 R 196162 CDS YP_923938.1 119716973 4598782 2920249..2921538 1 NC_008699.1 KEGG: tma:TM0599 hypothetical protein; hypothetical protein 2921538 4598782 Noca_2748 Nocardioides sp. JS614 hypothetical protein YP_923938.1 2920249 D 196162 CDS YP_923939.1 119716974 4598783 2921520..2922008 1 NC_008699.1 hypothetical protein 2922008 4598783 Noca_2749 Nocardioides sp. JS614 hypothetical protein YP_923939.1 2921520 D 196162 CDS YP_923940.1 119716975 4598784 2922034..2922402 1 NC_008699.1 hypothetical protein 2922402 4598784 Noca_2750 Nocardioides sp. JS614 hypothetical protein YP_923940.1 2922034 D 196162 CDS YP_923941.1 119716976 4598785 2922568..2923614 1 NC_008699.1 hypothetical protein 2923614 4598785 Noca_2751 Nocardioides sp. JS614 hypothetical protein YP_923941.1 2922568 D 196162 CDS YP_923942.1 119716977 4598786 complement(2923745..2924233) 1 NC_008699.1 hypothetical protein 2924233 4598786 Noca_2752 Nocardioides sp. JS614 hypothetical protein YP_923942.1 2923745 R 196162 CDS YP_923943.1 119716978 4598787 complement(2924375..2925136) 1 NC_008699.1 PFAM: Integrase, catalytic region; KEGG: cef:CE2619 putative transposase; integrase catalytic subunit 2925136 4598787 Noca_2753 Nocardioides sp. JS614 integrase catalytic subunit YP_923943.1 2924375 R 196162 CDS YP_923944.1 119716979 4598788 2925404..2926984 1 NC_008699.1 KEGG: rpa:RPA2214 possible helicase; hypothetical protein 2926984 4598788 Noca_2754 Nocardioides sp. JS614 hypothetical protein YP_923944.1 2925404 D 196162 CDS YP_923945.1 119716980 4598789 2927018..2927938 1 NC_008699.1 hypothetical protein 2927938 4598789 Noca_2755 Nocardioides sp. JS614 hypothetical protein YP_923945.1 2927018 D 196162 CDS YP_923946.1 119716981 4598790 2928059..2929612 1 NC_008699.1 PFAM: Integrase, catalytic region; KEGG: rha:RHA1_ro06977 possible transposase; integrase catalytic subunit 2929612 4598790 Noca_2756 Nocardioides sp. JS614 integrase catalytic subunit YP_923946.1 2928059 D 196162 CDS YP_923947.1 119716982 4598791 2929609..2930388 1 NC_008699.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: rha:RHA1_ro06982 possible insertion sequence ATP-binding protein; IstB ATP binding domain-containing protein 2930388 4598791 Noca_2757 Nocardioides sp. JS614 IstB ATP binding domain-containing protein YP_923947.1 2929609 D 196162 CDS YP_923948.1 119716983 4598792 complement(2931241..2932566) 1 NC_008699.1 KEGG: mbo:Mb3101 hypothetical protein; hypothetical protein 2932566 4598792 Noca_2758 Nocardioides sp. JS614 hypothetical protein YP_923948.1 2931241 R 196162 CDS YP_923949.1 119716984 4598793 complement(2932659..2933081) 1 NC_008699.1 PFAM: regulatory protein, MarR; KEGG: mmc:Mmcs_5385 transcriptional regulator, MarR family; regulatory protein MarR 2933081 4598793 Noca_2759 Nocardioides sp. JS614 regulatory protein MarR YP_923949.1 2932659 R 196162 CDS YP_923950.1 119716985 4598794 2933236..2933346 1 NC_008699.1 hypothetical protein 2933346 4598794 Noca_2760 Nocardioides sp. JS614 hypothetical protein YP_923950.1 2933236 D 196162 CDS YP_923951.1 119716986 4598795 2933437..2933604 1 NC_008699.1 hypothetical protein 2933604 4598795 Noca_2761 Nocardioides sp. JS614 hypothetical protein YP_923951.1 2933437 D 196162 CDS YP_923952.1 119716987 4598796 2933601..2934068 1 NC_008699.1 hypothetical protein 2934068 4598796 Noca_2762 Nocardioides sp. JS614 hypothetical protein YP_923952.1 2933601 D 196162 CDS YP_923953.1 119716988 4598798 complement(2935358..2936521) 1 NC_008699.1 KEGG: rha:RHA1_ro04599 probable acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; acetyl-CoA acetyltransferase 2936521 4598798 Noca_2764 Nocardioides sp. JS614 acetyl-CoA acetyltransferase YP_923953.1 2935358 R 196162 CDS YP_923954.1 119716989 4598799 complement(2936514..2937146) 1 NC_008699.1 PFAM: regulatory protein, TetR; KEGG: rha:RHA1_ro04598 possible transcriptional regulator; regulatory protein TetR 2937146 4598799 Noca_2765 Nocardioides sp. JS614 regulatory protein TetR YP_923954.1 2936514 R 196162 CDS YP_923955.1 119716990 4598800 complement(2937151..2937933) 1 NC_008699.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sma:SAV6197 putative oxidoreductase; short chain dehydrogenase 2937933 4598800 Noca_2766 Nocardioides sp. JS614 short chain dehydrogenase YP_923955.1 2937151 R 196162 CDS YP_923956.1 119716991 4598801 complement(2937930..2939066) 1 NC_008699.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rha:RHA1_ro04596 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2939066 4598801 Noca_2767 Nocardioides sp. JS614 acyl-CoA dehydrogenase domain-containing protein YP_923956.1 2937930 R 196162 CDS YP_923957.1 119716992 4598802 2939160..2940629 1 NC_008699.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rha:RHA1_ro04595 CoA ligase; AMP-dependent synthetase and ligase 2940629 4598802 Noca_2768 Nocardioides sp. JS614 AMP-dependent synthetase and ligase YP_923957.1 2939160 D 196162 CDS YP_923958.1 119716993 4598803 2940629..2941810 1 NC_008699.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: nfa:nfa4810 putative acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2941810 4598803 Noca_2769 Nocardioides sp. JS614 acyl-CoA dehydrogenase domain-containing protein YP_923958.1 2940629 D 196162 CDS YP_923959.1 119716994 4598804 2941807..2942676 1 NC_008699.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: mmc:Mmcs_4696 acyl-CoA dehydrogenase-like protein; acyl-CoA dehydrogenase domain-containing protein 2942676 4598804 Noca_2770 Nocardioides sp. JS614 acyl-CoA dehydrogenase domain-containing protein YP_923959.1 2941807 D 196162 CDS YP_923960.1 119716995 4598805 2942676..2943647 1 NC_008699.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: nfa:nfa4790 putative acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2943647 4598805 Noca_2771 Nocardioides sp. JS614 acyl-CoA dehydrogenase domain-containing protein YP_923960.1 2942676 D 196162 CDS YP_923961.1 119716996 4598806 2943759..2944295 1 NC_008699.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: sus:Acid_7653 cupin 2, conserved barrel domain protein; cupin 2944295 4598806 Noca_2772 Nocardioides sp. JS614 cupin YP_923961.1 2943759 D 196162 CDS YP_923962.1 119716997 4598807 complement(2944317..2944931) 1 NC_008699.1 PFAM: flavin reductase domain protein, FMN-binding; KEGG: rha:RHA1_ro08962 possible oxidoreductase; flavin reductase domain-containing protein 2944931 4598807 Noca_2773 Nocardioides sp. JS614 flavin reductase domain-containing protein YP_923962.1 2944317 R 196162 CDS YP_923963.1 119716998 4598808 complement(2945010..2945912) 1 NC_008699.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rha:RHA1_ro04541 3,4-DHSA dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 2945912 4598808 Noca_2774 Nocardioides sp. JS614 glyoxalase/bleomycin resistance protein/dioxygenase YP_923963.1 2945010 R 196162 CDS YP_923964.1 119716999 4598809 complement(2945909..2946817) 1 NC_008699.1 PFAM: alpha/beta hydrolase fold; KEGG: nfa:nfa4730 putative hydrolase; alpha/beta hydrolase fold protein 2946817 4598809 Noca_2775 Nocardioides sp. JS614 alpha/beta hydrolase fold protein YP_923964.1 2945909 R 196162 CDS YP_923965.1 119717000 4598810 complement(2946819..2947985) 1 NC_008699.1 PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rha:RHA1_ro04539 3-HSA hydroxylase, oxygenase; acyl-CoA dehydrogenase type 2 2947985 4598810 Noca_2776 Nocardioides sp. JS614 acyl-CoA dehydrogenase type 2 YP_923965.1 2946819 R 196162 CDS YP_923966.1 119717001 4598811 complement(2948101..2948322) 1 NC_008699.1 hypothetical protein 2948322 4598811 Noca_2777 Nocardioides sp. JS614 hypothetical protein YP_923966.1 2948101 R 196162 CDS YP_923967.1 119717002 4598812 complement(2948433..2948567) 1 NC_008699.1 KEGG: rha:RHA1_ro05800 acetaldehyde dehydrogenase (acetylating); acetaldehyde dehydrogenase 2948567 4598812 Noca_2778 Nocardioides sp. JS614 acetaldehyde dehydrogenase YP_923967.1 2948433 R 196162 CDS YP_923968.1 119717003 4598813 complement(2948586..2949407) 1 NC_008699.1 PFAM: Hydratase/decarboxylase; KEGG: rha:RHA1_ro08085 2-oxopent-4-enoate hydratase; hydratase/decarboxylase 2949407 4598813 Noca_2779 Nocardioides sp. JS614 hydratase/decarboxylase YP_923968.1 2948586 R 196162 CDS YP_923969.1 119717004 4596256 2949443..2951137 1 NC_008699.1 initiates steroid ring degradation; catalyzes the transhydrogenation of 3-keto-4-ene-steroid to 3-keto-1,4-diene-steroid e.g., progesterone to 1,4-androstadiene-3,17-dione; 3-ketosteroid-delta-1-dehydrogenase 2951137 4596256 Noca_2780 Nocardioides sp. JS614 3-ketosteroid-delta-1-dehydrogenase YP_923969.1 2949443 D 196162 CDS YP_923970.1 119717005 4596257 2951137..2951985 1 NC_008699.1 PFAM: MaoC domain protein dehydratase; KEGG: rha:RHA1_ro04531 2-enoyl acyl-CoA hydratase; dehydratase 2951985 4596257 Noca_2781 Nocardioides sp. JS614 dehydratase YP_923970.1 2951137 D 196162 CDS YP_923971.1 119717006 4596258 complement(2951987..2953189) 1 NC_008699.1 PFAM: protein of unknown function DUF480; Methyltransferase type 11; Methyltransferase type 12; KEGG: sus:Acid_1185 protein of unknown function DUF480; hypothetical protein 2953189 4596258 Noca_2782 Nocardioides sp. JS614 hypothetical protein YP_923971.1 2951987 R 196162 CDS YP_923972.1 119717007 4596259 complement(2953200..2953712) 1 NC_008699.1 KEGG: rha:RHA1_ro00985 hypothetical protein; hypothetical protein 2953712 4596259 Noca_2783 Nocardioides sp. JS614 hypothetical protein YP_923972.1 2953200 R 196162 CDS YP_923973.1 119717008 4596260 2953751..2954560 1 NC_008699.1 PFAM: protein of unknown function DUF344; KEGG: mbo:Mb3261c possible transcriptional regulatory protein PvdS (probable RNA polymerase sigma factor); hypothetical protein 2954560 4596260 Noca_2784 Nocardioides sp. JS614 hypothetical protein YP_923973.1 2953751 D 196162 CDS YP_923974.1 119717009 4596261 2954612..2955403 1 NC_008699.1 KEGG: mpa:MAP2690c hypothetical protein; hypothetical protein 2955403 4596261 Noca_2785 Nocardioides sp. JS614 hypothetical protein YP_923974.1 2954612 D 196162 CDS YP_923975.1 119717010 4596262 complement(2955419..2956603) 1 NC_008699.1 KEGG: nfa:nfa4530 lipid-transfer protein; lipid-transfer protein 2956603 4596262 Noca_2786 Nocardioides sp. JS614 lipid-transfer protein YP_923975.1 2955419 R 196162 CDS YP_923976.1 119717011 4596263 complement(2956600..2956980) 1 NC_008699.1 PFAM: MaoC domain protein dehydratase; KEGG: mmc:Mmcs_4673 MaoC-like dehydratase; dehydratase 2956980 4596263 Noca_2787 Nocardioides sp. JS614 dehydratase YP_923976.1 2956600 R 196162 CDS YP_923977.1 119717012 4596264 complement(2956977..2957375) 1 NC_008699.1 PFAM: protein of unknown function DUF35; KEGG: nfa:nfa4510 hypothetical protein; hypothetical protein 2957375 4596264 Noca_2788 Nocardioides sp. JS614 hypothetical protein YP_923977.1 2956977 R 196162 CDS YP_923978.1 119717013 4596265 complement(2957372..2957905) 1 NC_008699.1 KEGG: nfa:nfa4510 hypothetical protein; hypothetical protein 2957905 4596265 Noca_2789 Nocardioides sp. JS614 hypothetical protein YP_923978.1 2957372 R 196162 CDS YP_923979.1 119717014 4596266 complement(2957967..2960198) 1 NC_008699.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rha:RHA1_ro04485 probable acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2960198 4596266 Noca_2790 Nocardioides sp. JS614 acyl-CoA dehydrogenase domain-containing protein YP_923979.1 2957967 R 196162 CDS YP_923980.1 119717015 4596267 2960288..2961238 1 NC_008699.1 PFAM: alpha/beta hydrolase fold; KEGG: nfa:nfa15720 putative hydrolase; alpha/beta hydrolase fold protein 2961238 4596267 Noca_2791 Nocardioides sp. JS614 alpha/beta hydrolase fold protein YP_923980.1 2960288 D 196162 CDS YP_923981.1 119717016 4596268 complement(2961204..2962670) 1 NC_008699.1 PFAM: protein of unknown function UPF0089; KEGG: rha:RHA1_ro06855 hypothetical protein; diacylglycerol O-acyltransferase 2962670 4596268 Noca_2792 Nocardioides sp. JS614 diacylglycerol O-acyltransferase YP_923981.1 2961204 R 196162 CDS YP_923982.1 119717017 4596269 2962841..2964103 1 NC_008699.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: rha:RHA1_ro06856 possible esterase/lipase; alpha/beta hydrolase domain-containing protein 2964103 4596269 Noca_2793 Nocardioides sp. JS614 alpha/beta hydrolase domain-containing protein YP_923982.1 2962841 D 196162 CDS YP_923983.1 119717018 4596270 complement(2964100..2965500) 1 NC_008699.1 KEGG: sco:SCO2409 secreted protein; membrane-bound lytic murein transglycosylase B-like protein 2965500 4596270 Noca_2794 Nocardioides sp. JS614 membrane-bound lytic murein transglycosylase B-like protein YP_923983.1 2964100 R 196162 CDS YP_923984.1 119717019 4596271 complement(2965723..2967777) 1 NC_008699.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rha:RHA1_ro04483 possible acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2967777 4596271 Noca_2795 Nocardioides sp. JS614 acyl-CoA dehydrogenase domain-containing protein YP_923984.1 2965723 R 196162 CDS YP_923985.1 119717020 4596272 2967846..2968514 1 NC_008699.1 KEGG: tfu:Tfu_0569 hypothetical protein; hypothetical protein 2968514 4596272 Noca_2796 Nocardioides sp. JS614 hypothetical protein YP_923985.1 2967846 D 196162 CDS YP_923986.1 119717021 4596273 complement(2968458..2969612) 1 NC_008699.1 KEGG: mmc:Mmcs_5100 hypothetical protein; hypothetical protein 2969612 4596273 Noca_2797 Nocardioides sp. JS614 hypothetical protein YP_923986.1 2968458 R 196162 CDS YP_923987.1 119717022 4596274 complement(2969605..2970354) 1 NC_008699.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rha:RHA1_ro04657 possible methyltransferase; type 11 methyltransferase 2970354 4596274 Noca_2798 Nocardioides sp. JS614 type 11 methyltransferase YP_923987.1 2969605 R 196162 CDS YP_923988.1 119717023 4596275 complement(2970341..2971606) 1 NC_008699.1 PFAM: glycosyl transferase, group 1; KEGG: rha:RHA1_ro04656 probable phosphatidylinositol alpha-mannosyltransferase; group 1 glycosyl transferase 2971606 4596275 Noca_2799 Nocardioides sp. JS614 group 1 glycosyl transferase YP_923988.1 2970341 R 196162 CDS YP_923989.1 119717024 4596276 2971805..2972410 1 NC_008699.1 PFAM: regulatory protein, TetR; KEGG: nfa:nfa4470 putative transcriptional regulator; TetR family transcriptional regulator 2972410 4596276 Noca_2800 Nocardioides sp. JS614 TetR family transcriptional regulator YP_923989.1 2971805 D 196162 CDS YP_923990.1 119717025 4596277 2972454..2972675 1 NC_008699.1 KEGG: fra:Francci3_1080 hypothetical protein; hypothetical protein 2972675 4596277 Noca_2801 Nocardioides sp. JS614 hypothetical protein YP_923990.1 2972454 D 196162 CDS YP_923991.1 119717026 4596278 complement(2972690..2974255) 1 NC_008699.1 TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: nfa:nfa48950 putative peptide chain release factor; peptide chain release factor 3 2974255 4596278 Noca_2802 Nocardioides sp. JS614 peptide chain release factor 3 YP_923991.1 2972690 R 196162 CDS YP_923992.1 119717027 4596279 2974373..2975182 1 NC_008699.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; regulatory protein, ArsR; KEGG: mmc:Mmcs_4520 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 2975182 4596279 Noca_2803 Nocardioides sp. JS614 ArsR family transcriptional regulator YP_923992.1 2974373 D 196162 CDS YP_923993.1 119717028 4596280 2975175..2975576 1 NC_008699.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sme:SMb21154 hypothetical protein, bleomycin resistance protein family; glyoxalase/bleomycin resistance protein/dioxygenase 2975576 4596280 Noca_2804 Nocardioides sp. JS614 glyoxalase/bleomycin resistance protein/dioxygenase YP_923993.1 2975175 D 196162 CDS YP_923994.1 119717029 4596281 2975573..2975908 1 NC_008699.1 PFAM: protein of unknown function UPF0060; KEGG: rha:RHA1_ro06609 hypothetical protein; hypothetical protein 2975908 4596281 Noca_2805 Nocardioides sp. JS614 hypothetical protein YP_923994.1 2975573 D 196162 CDS YP_923995.1 119717030 4596282 complement(2976006..2979563) 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rha:RHA1_ro04958 bifunctional ABC multidrug transporter; ABC transporter-like protein 2979563 4596282 Noca_2806 Nocardioides sp. JS614 ABC transporter-like protein YP_923995.1 2976006 R 196162 CDS YP_923996.1 119717031 4596283 complement(2979617..2979796) 1 NC_008699.1 hypothetical protein 2979796 4596283 Noca_2807 Nocardioides sp. JS614 hypothetical protein YP_923996.1 2979617 R 196162 CDS YP_923997.1 119717032 4596284 2979986..2980387 1 NC_008699.1 hypothetical protein 2980387 4596284 Noca_2808 Nocardioides sp. JS614 hypothetical protein YP_923997.1 2979986 D 196162 CDS YP_923998.1 119717033 4596099 2980523..2981290 1 NC_008699.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: fal:FRAAL3997 hypothetical protein; HNH endonuclease 2981290 4596099 Noca_2809 Nocardioides sp. JS614 HNH endonuclease YP_923998.1 2980523 D 196162 CDS YP_923999.1 119717034 4596100 2981367..2981990 1 NC_008699.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: tbd:Tbd_1055 S-adenosylmethionine-dependent methyltransferase; type 12 methyltransferase 2981990 4596100 Noca_2810 Nocardioides sp. JS614 type 12 methyltransferase YP_923999.1 2981367 D 196162 CDS YP_924000.1 119717035 4596101 complement(2981997..2983295) 1 NC_008699.1 hypothetical protein 2983295 4596101 Noca_2811 Nocardioides sp. JS614 hypothetical protein YP_924000.1 2981997 R 196162 CDS YP_924001.1 119717036 4596102 complement(2983409..2983906) 1 NC_008699.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: nfa:nfa42140 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like protein 2983906 4596102 Noca_2812 Nocardioides sp. JS614 pyridoxamine 5'-phosphate oxidase-like protein YP_924001.1 2983409 R 196162 CDS YP_924002.1 119717037 4596103 complement(2983910..2984665) 1 NC_008699.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bur:Bcep18194_B1012 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2984665 4596103 Noca_2813 Nocardioides sp. JS614 short-chain dehydrogenase/reductase SDR YP_924002.1 2983910 R 196162 CDS YP_924003.1 119717038 4596104 complement(2984662..2985591) 1 NC_008699.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: nfa:nfa5340 putative short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 2985591 4596104 Noca_2814 Nocardioides sp. JS614 short-chain dehydrogenase/reductase SDR YP_924003.1 2984662 R 196162 CDS YP_924004.1 119717039 4596105 complement(2985594..2985785) 1 NC_008699.1 KEGG: mmc:Mmcs_3697 hypothetical protein; hypothetical protein 2985785 4596105 Noca_2815 Nocardioides sp. JS614 hypothetical protein YP_924004.1 2985594 R 196162 CDS YP_924005.1 119717040 4596106 complement(2985794..2986786) 1 NC_008699.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: fal:FRAAL1022 putative thioredoxin reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2986786 4596106 Noca_2816 Nocardioides sp. JS614 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_924005.1 2985794 R 196162 CDS YP_924006.1 119717041 4596107 complement(2986850..2987536) 1 NC_008699.1 KEGG: sma:SAV5892 hypothetical protein; hypothetical protein 2987536 4596107 Noca_2817 Nocardioides sp. JS614 hypothetical protein YP_924006.1 2986850 R 196162 CDS YP_924007.1 119717042 4596108 complement(2987536..2988066) 1 NC_008699.1 KEGG: sma:SAV5893 hypothetical protein; hypothetical protein 2988066 4596108 Noca_2818 Nocardioides sp. JS614 hypothetical protein YP_924007.1 2987536 R 196162 CDS YP_924008.1 119717043 4596109 complement(2988063..2989331) 1 NC_008699.1 TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5894 putative secreted protein; virulence factor Mce family protein 2989331 4596109 Noca_2819 Nocardioides sp. JS614 virulence factor Mce family protein YP_924008.1 2988063 R 196162 CDS YP_924009.1 119717044 4596110 complement(2989328..2990638) 1 NC_008699.1 TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5895 putative secreted protein; virulence factor Mce family protein 2990638 4596110 Noca_2820 Nocardioides sp. JS614 virulence factor Mce family protein YP_924009.1 2989328 R 196162 CDS YP_924010.1 119717045 4596111 complement(2990635..2991849) 1 NC_008699.1 TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5896 mce-related protein; virulence factor Mce family protein 2991849 4596111 Noca_2821 Nocardioides sp. JS614 virulence factor Mce family protein YP_924010.1 2990635 R 196162 CDS YP_924011.1 119717046 4596112 complement(2991846..2992835) 1 NC_008699.1 TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5897 putative secreted protein; virulence factor Mce family protein 2992835 4596112 Noca_2822 Nocardioides sp. JS614 virulence factor Mce family protein YP_924011.1 2991846 R 196162 CDS YP_924012.1 119717047 4596113 complement(2992832..2993917) 1 NC_008699.1 TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: rha:RHA1_ro01970 possible Mce family protein; virulence factor Mce family protein 2993917 4596113 Noca_2823 Nocardioides sp. JS614 virulence factor Mce family protein YP_924012.1 2992832 R 196162 CDS YP_924013.1 119717048 4596114 complement(2993917..2995227) 1 NC_008699.1 TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5899 mce-related protein; virulence factor Mce family protein 2995227 4596114 Noca_2824 Nocardioides sp. JS614 virulence factor Mce family protein YP_924013.1 2993917 R 196162 CDS YP_924014.1 119717049 4596115 complement(2995235..2996074) 1 NC_008699.1 PFAM: protein of unknown function DUF140; KEGG: sma:SAV5900 hypothetical protein; hypothetical protein 2996074 4596115 Noca_2825 Nocardioides sp. JS614 hypothetical protein YP_924014.1 2995235 R 196162 CDS YP_924015.1 119717050 4596116 complement(2996080..2996853) 1 NC_008699.1 PFAM: protein of unknown function DUF140; KEGG: sco:SCO2421 putative ABC-transporter integral membrane protein; hypothetical protein 2996853 4596116 Noca_2826 Nocardioides sp. JS614 hypothetical protein YP_924015.1 2996080 R 196162 CDS YP_924016.1 119717051 4596117 2996996..2997556 1 NC_008699.1 PFAM: protein of unknown function DUF1707; KEGG: tfu:Tfu_0460 hypothetical protein; hypothetical protein 2997556 4596117 Noca_2827 Nocardioides sp. JS614 hypothetical protein YP_924016.1 2996996 D 196162 CDS YP_924017.1 119717052 4596118 complement(2997650..2998345) 1 NC_008699.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rha:RHA1_ro11203 response regulator, two-component system; response regulator receiver 2998345 4596118 Noca_2828 Nocardioides sp. JS614 response regulator receiver YP_924017.1 2997650 R 196162 CDS YP_924018.1 119717053 4596119 2998464..2999645 1 NC_008699.1 PFAM: GAF domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: rha:RHA1_ro03573 anti-sigma factor, possible RsbU; GAF domain-containing protein 2999645 4596119 Noca_2829 Nocardioides sp. JS614 GAF domain-containing protein YP_924018.1 2998464 D 196162 CDS YP_924019.1 119717054 4596120 complement(2999614..3000303) 1 NC_008699.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: fal:FRAAL3944 hypothetical membrane protein; PA-phosphatase-like phosphoesterase 3000303 4596120 Noca_2830 Nocardioides sp. JS614 PA-phosphatase-like phosphoesterase YP_924019.1 2999614 R 196162 CDS YP_924020.1 119717055 4596121 complement(3000326..3000880) 1 NC_008699.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: eli:ELI_05015 hypothetical protein; hemerythrin HHE cation binding domain-containing protein 3000880 4596121 Noca_2831 Nocardioides sp. JS614 hemerythrin HHE cation binding domain-containing protein YP_924020.1 3000326 R 196162 CDS YP_924021.1 119717056 4596122 3001007..3003016 1 NC_008699.1 PFAM: glycosyl transferase, family 2; KEGG: rha:RHA1_ro03574 probable cellulose synthase catalytic subunit; cellulose synthase 3003016 4596122 Noca_2832 Nocardioides sp. JS614 cellulose synthase YP_924021.1 3001007 D 196162 CDS YP_924022.1 119717057 4596123 3003013..3003348 1 NC_008699.1 TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rha:RHA1_ro03575 anti-sigma factor antagonist, possible RsbV; anti-anti-sigma factor 3003348 4596123 Noca_2833 Nocardioides sp. JS614 anti-anti-sigma factor YP_924022.1 3003013 D 196162 CDS YP_924023.1 119717058 4596124 3003341..3003793 1 NC_008699.1 KEGG: mmc:Mmcs_0408 putative anti-sigma regulatory factor, serine/threonine protein kinase; putative anti-sigma regulatory factor 3003793 4596124 Noca_2834 Nocardioides sp. JS614 putative anti-sigma regulatory factor YP_924023.1 3003341 D 196162 CDS YP_924024.1 119717059 4598434 complement(3003803..3005089) 1 NC_008699.1 PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro05089 probable MFS transporter; major facilitator transporter 3005089 4598434 Noca_2835 Nocardioides sp. JS614 major facilitator transporter YP_924024.1 3003803 R 196162 CDS YP_924025.1 119717060 4598435 complement(3005214..3005651) 1 NC_008699.1 KEGG: sco:SCO2460 hypothetical protein; hypothetical protein 3005651 4598435 Noca_2836 Nocardioides sp. JS614 hypothetical protein YP_924025.1 3005214 R 196162 CDS YP_924026.1 119717061 4598436 complement(3005648..3007768) 1 NC_008699.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 3007768 4598436 Noca_2837 Nocardioides sp. JS614 excinuclease ABC subunit B YP_924026.1 3005648 R 196162 CDS YP_924027.1 119717062 4598437 3007823..3009082 1 NC_008699.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: tfu:Tfu_2817 phospholipase D/Transphosphatidylase; phospholipase D/transphosphatidylase 3009082 4598437 Noca_2838 Nocardioides sp. JS614 phospholipase D/transphosphatidylase YP_924027.1 3007823 D 196162 CDS YP_924028.1 119717063 4598438 complement(3009126..3009689) 1 NC_008699.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: nfa:nfa52610 hypothetical protein; carboxymuconolactone decarboxylase 3009689 4598438 Noca_2839 Nocardioides sp. JS614 carboxymuconolactone decarboxylase YP_924028.1 3009126 R 196162 CDS YP_924029.1 119717064 4598439 complement(3009686..3010594) 1 NC_008699.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: nfa:nfa26950 short chain dehydrogenase; short chain dehydrogenase 3010594 4598439 Noca_2840 Nocardioides sp. JS614 short chain dehydrogenase YP_924029.1 3009686 R 196162 CDS YP_924030.1 119717065 4598440 complement(3010600..3011541) 1 NC_008699.1 KEGG: nfa:nfa56060 hypothetical protein; hypothetical protein 3011541 4598440 Noca_2841 Nocardioides sp. JS614 hypothetical protein YP_924030.1 3010600 R 196162 CDS YP_924031.1 119717066 4598441 complement(3011763..3012632) 1 NC_008699.1 PFAM: 5'-3' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2; KEGG: mmc:Mmcs_3011 DNA polymerase I; 5'-3' exonuclease 3012632 4598441 Noca_2842 Nocardioides sp. JS614 5'-3' exonuclease YP_924031.1 3011763 R 196162 CDS YP_924032.1 119717067 4598442 complement(3012759..3013775) 1 NC_008699.1 KEGG: dge:Dgeo_0459 hypothetical protein; hypothetical protein 3013775 4598442 Noca_2843 Nocardioides sp. JS614 hypothetical protein YP_924032.1 3012759 R 196162 CDS YP_924033.1 119717068 4598443 complement(3013806..3014114) 1 NC_008699.1 hypothetical protein 3014114 4598443 Noca_2844 Nocardioides sp. JS614 hypothetical protein YP_924033.1 3013806 R 196162 CDS YP_924034.1 119717069 4598444 3014222..3015751 1 NC_008699.1 catalyzes the ATP-dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; ATP-dependent DNA ligase 3015751 ligB 4598444 ligB Nocardioides sp. JS614 ATP-dependent DNA ligase YP_924034.1 3014222 D 196162 CDS YP_924035.1 119717070 4598445 3015837..3016520 1 NC_008699.1 PFAM: regulatory protein, TetR; KEGG: mma:MM2546 hypothetical protein; regulatory protein TetR 3016520 4598445 Noca_2846 Nocardioides sp. JS614 regulatory protein TetR YP_924035.1 3015837 D 196162 CDS YP_924036.1 119717071 4598446 complement(3016539..3017819) 1 NC_008699.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 3017819 4598446 Noca_2847 Nocardioides sp. JS614 acetyl-CoA acetyltransferase YP_924036.1 3016539 R 196162 CDS YP_924037.1 119717072 4598447 3017917..3019251 1 NC_008699.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 3019251 fabG 4598447 fabG Nocardioides sp. JS614 3-ketoacyl-ACP reductase YP_924037.1 3017917 D 196162 CDS YP_924038.1 119717073 4598448 3019251..3020117 1 NC_008699.1 PFAM: MaoC domain protein dehydratase; KEGG: abo:ABO_1719 MaoC domain protein, putative; dehydratase 3020117 4598448 Noca_2849 Nocardioides sp. JS614 dehydratase YP_924038.1 3019251 D 196162 CDS YP_924039.1 119717074 4598449 complement(3020188..3021078) 1 NC_008699.1 PFAM: acyl-CoA thioesterase; KEGG: tfu:Tfu_0531 acyl-CoA thioesterase; palmitoyl-CoA hydrolase 3021078 4598449 Noca_2850 Nocardioides sp. JS614 palmitoyl-CoA hydrolase YP_924039.1 3020188 R 196162 CDS YP_924040.1 119717075 4598450 complement(3021075..3021941) 1 NC_008699.1 PFAM: acyl-CoA thioesterase; KEGG: rha:RHA1_ro06887 acyl-CoA thioesterase II; palmitoyl-CoA hydrolase 3021941 4598450 Noca_2851 Nocardioides sp. JS614 palmitoyl-CoA hydrolase YP_924040.1 3021075 R 196162 CDS YP_924041.1 119717076 4598451 complement(3021946..3022881) 1 NC_008699.1 PFAM: protein of unknown function DUF75; KEGG: mpa:MAP2831 hypothetical protein; hypothetical protein 3022881 4598451 Noca_2852 Nocardioides sp. JS614 hypothetical protein YP_924041.1 3021946 R 196162 CDS YP_924042.1 119717077 4598452 3022987..3024312 1 NC_008699.1 KEGG: tfu:Tfu_1903 thiolase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; acetyl-CoA acetyltransferase 3024312 4598452 Noca_2853 Nocardioides sp. JS614 acetyl-CoA acetyltransferase YP_924042.1 3022987 D 196162 CDS YP_924043.1 119717078 4598453 3024309..3026399 1 NC_008699.1 PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: tfu:Tfu_1904 fatty acid oxidation complex alpha-subunit; 3-hydroxyacyl-CoA dehydrogenase 3026399 4598453 Noca_2854 Nocardioides sp. JS614 3-hydroxyacyl-CoA dehydrogenase YP_924043.1 3024309 D 196162 CDS YP_924044.1 119717079 4598454 complement(3026750..3028888) 1 NC_008699.1 KEGG: ade:Adeh_3529 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor signal transduction histidine kinase 3028888 4598454 Noca_2855 Nocardioides sp. JS614 PAS/PAC sensor signal transduction histidine kinase YP_924044.1 3026750 R 196162 CDS YP_924045.1 119717080 4598455 complement(3029057..3030424) 1 NC_008699.1 KEGG: sth:STH1795 hypothetical protein; DNA primase-like protein 3030424 4598455 Noca_2856 Nocardioides sp. JS614 DNA primase-like protein YP_924045.1 3029057 R 196162 CDS YP_924046.1 119717081 4598456 complement(3030421..3031935) 1 NC_008699.1 PFAM: amino acid permease-associated region; KEGG: rxy:Rxyl_2013 amino acid permease-associated region; amino acid permease-associated protein 3031935 4598456 Noca_2857 Nocardioides sp. JS614 amino acid permease-associated protein YP_924046.1 3030421 R 196162 CDS YP_924047.1 119717082 4598457 complement(3031980..3033188) 1 NC_008699.1 KEGG: sco:SCO2134 hypothetical protein; hypothetical protein 3033188 4598457 Noca_2858 Nocardioides sp. JS614 hypothetical protein YP_924047.1 3031980 R 196162 CDS YP_924048.1 119717083 4598458 complement(3033169..3035073) 1 NC_008699.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 3035073 4598458 Noca_2859 Nocardioides sp. JS614 1-deoxy-D-xylulose-5-phosphate synthase YP_924048.1 3033169 R 196162 CDS YP_924049.1 119717084 4598459 complement(3035093..3036016) 1 NC_008699.1 PFAM: Strictosidine synthase; SMP-30/Gluconolaconase/LRE domain protein; KEGG: mmc:Mmcs_1217 strictosidine synthase; strictosidine synthase 3036016 4598459 Noca_2860 Nocardioides sp. JS614 strictosidine synthase YP_924049.1 3035093 R 196162 CDS YP_924050.1 119717085 4598460 complement(3036201..3036629) 1 NC_008699.1 PFAM: NUDIX hydrolase; KEGG: mpa:MAP2711c hypothetical protein; NUDIX hydrolase 3036629 4598460 Noca_2861 Nocardioides sp. JS614 NUDIX hydrolase YP_924050.1 3036201 R 196162 CDS YP_924051.1 119717086 4598461 3036699..3037688 1 NC_008699.1 PFAM: glycoside hydrolase, family 18; SMART: chitinase II; KEGG: dsy:DSY4848 hypothetical protein; glycoside hydrolase family protein 3037688 4598461 Noca_2862 Nocardioides sp. JS614 glycoside hydrolase family protein YP_924051.1 3036699 D 196162 CDS YP_924052.1 119717087 4598462 3037709..3041107 1 NC_008699.1 PFAM: transcriptional regulator domain protein; transcriptional activator domain; KEGG: rha:RHA1_ro05028 probable transcriptional regulator; transcriptional activator domain-containing protein 3041107 4598462 Noca_2863 Nocardioides sp. JS614 transcriptional activator domain-containing protein YP_924052.1 3037709 D 196162 CDS YP_924053.1 119717088 4598463 complement(3041311..3043458) 1 NC_008699.1 PFAM: MMPL domain protein; KEGG: rha:RHA1_ro05027 membrane protein; MMPL domain-containing protein 3043458 4598463 Noca_2864 Nocardioides sp. JS614 MMPL domain-containing protein YP_924053.1 3041311 R 196162 CDS YP_924054.1 119717089 4598464 complement(3043714..3044370) 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mbo:Mb2593 probable glutamine-transport ATP-binding protein ABC transporter GlnQ; ABC transporter-like protein 3044370 4598464 Noca_2865 Nocardioides sp. JS614 ABC transporter-like protein YP_924054.1 3043714 R 196162 CDS YP_924055.1 119717090 4598465 complement(3044363..3045214) 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO2674 ABC transporter ATP-binding protein; ABC transporter-like protein 3045214 4598465 Noca_2866 Nocardioides sp. JS614 ABC transporter-like protein YP_924055.1 3044363 R 196162 CDS YP_924056.1 119717091 4598466 complement(3045211..3048294) 1 NC_008699.1 PFAM: protein of unknown function DUF214; KEGG: fal:FRAAL5378 putative ABC transport system integral membrane protein; hypothetical protein 3048294 4598466 Noca_2867 Nocardioides sp. JS614 hypothetical protein YP_924056.1 3045211 R 196162 CDS YP_924057.1 119717092 4598467 3048791..3049033 1 NC_008699.1 hypothetical protein 3049033 4598467 Noca_2868 Nocardioides sp. JS614 hypothetical protein YP_924057.1 3048791 D 196162 CDS YP_924058.1 119717093 4598468 complement(3049136..3049339) 1 NC_008699.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: tfu:Tfu_0384 cold shock protein; cold-shock DNA-binding protein family protein 3049339 4598468 Noca_2869 Nocardioides sp. JS614 cold-shock DNA-binding protein family protein YP_924058.1 3049136 R 196162 CDS YP_924059.1 119717094 4598469 complement(3049565..3049966) 1 NC_008699.1 PFAM: protein of unknown function UPF0047; KEGG: fra:Francci3_3056 protein of unknown function UPF0047; hypothetical protein 3049966 4598469 Noca_2870 Nocardioides sp. JS614 hypothetical protein YP_924059.1 3049565 R 196162 CDS YP_924060.1 119717095 4598470 complement(3050190..3050573) 1 NC_008699.1 PFAM: protein of unknown function DUF77; KEGG: cdi:DIP1058 hypothetical protein; hypothetical protein 3050573 4598470 Noca_2871 Nocardioides sp. JS614 hypothetical protein YP_924060.1 3050190 R 196162 CDS YP_924061.1 119717096 4598471 3050610..3050927 1 NC_008699.1 hypothetical protein 3050927 4598471 Noca_2872 Nocardioides sp. JS614 hypothetical protein YP_924061.1 3050610 D 196162 CDS YP_924062.1 119717097 4598472 complement(3050908..3051423) 1 NC_008699.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sma:SAV6340 RNA polymerase ECF-subfamily sigma factor; sigma-70 region 4 domain-containing protein 3051423 4598472 Noca_2873 Nocardioides sp. JS614 sigma-70 region 4 domain-containing protein YP_924062.1 3050908 R 196162 CDS YP_924063.1 119717098 4596323 complement(3051410..3052723) 1 NC_008699.1 hypothetical protein 3052723 4596323 Noca_2874 Nocardioides sp. JS614 hypothetical protein YP_924063.1 3051410 R 196162 CDS YP_924064.1 119717099 4596324 3052921..3054219 1 NC_008699.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: mtc:MT3905 IS1557, transposase; transposase, IS204/IS1001/IS1096/IS1165 family protein 3054219 4596324 Noca_2875 Nocardioides sp. JS614 transposase, IS204/IS1001/IS1096/IS1165 family protein YP_924064.1 3052921 D 196162 CDS YP_924065.1 119717100 4596325 complement(3054292..3057108) 1 NC_008699.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 3057108 4596325 Noca_2876 Nocardioides sp. JS614 aconitate hydratase YP_924065.1 3054292 R 196162 CDS YP_924066.1 119717101 4596326 complement(3057380..3057790) 1 NC_008699.1 PFAM: DoxX family protein; KEGG: hma:rrnAC1471 terminal quinol oxidase subunit; DoxX family protein 3057790 4596326 Noca_2877 Nocardioides sp. JS614 DoxX family protein YP_924066.1 3057380 R 196162 CDS YP_924067.1 119717102 4596327 3058133..3061705 1 NC_008699.1 with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism; cobaltochelatase subunit CobN 3061705 cobN 4596327 cobN Nocardioides sp. JS614 cobaltochelatase subunit CobN YP_924067.1 3058133 D 196162 CDS YP_924068.1 119717103 4596328 3061702..3062421 1 NC_008699.1 catalyzes the formation of precorrin 6x from precorrin 5; precorrin 6A synthase 3062421 4596328 Noca_2879 Nocardioides sp. JS614 precorrin 6A synthase YP_924068.1 3061702 D 196162 CDS YP_924069.1 119717104 4596329 3062418..3063848 1 NC_008699.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 3063848 4596329 Noca_2880 Nocardioides sp. JS614 cobyric acid synthase YP_924069.1 3062418 D 196162 CDS YP_924070.1 119717105 4596330 3063845..3064576 1 NC_008699.1 KEGG: tfu:Tfu_0310 precorrin-6x reductase CbiJ/CobK; TIGRFAM: precorrin-6x reductase; PFAM: Precorrin-6x reductase CbiJ/CobK; precorrin-6A reductase 3064576 4596330 Noca_2881 Nocardioides sp. JS614 precorrin-6A reductase YP_924070.1 3063845 D 196162 CDS YP_924071.1 119717106 4596331 complement(3064581..3065462) 1 NC_008699.1 KEGG: sma:SAV2049 hypothetical protein; hypothetical protein 3065462 4596331 Noca_2882 Nocardioides sp. JS614 hypothetical protein YP_924071.1 3064581 R 196162 CDS YP_924072.1 119717107 4596332 complement(3065534..3065752) 1 NC_008699.1 KEGG: rpc:RPC_2504 hypothetical protein; hypothetical protein 3065752 4596332 Noca_2883 Nocardioides sp. JS614 hypothetical protein YP_924072.1 3065534 R 196162 CDS YP_924073.1 119717108 4596333 complement(3065945..3066625) 1 NC_008699.1 KEGG: pac:PPA0659 conserved protein, putative NADH:ubiquinone oxidoreductase; hypothetical protein 3066625 4596333 Noca_2884 Nocardioides sp. JS614 hypothetical protein YP_924073.1 3065945 R 196162 CDS YP_924074.1 119717109 4596334 complement(3066622..3067497) 1 NC_008699.1 TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: sco:SCO1847 cobalamin biosynthesis protein; adenosylcobinamide-phosphate synthase 3067497 4596334 Noca_2885 Nocardioides sp. JS614 adenosylcobinamide-phosphate synthase YP_924074.1 3066622 R 196162 CDS YP_924075.1 119717110 4596335 complement(3067553..3068593) 1 NC_008699.1 PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; KEGG: nfa:nfa17000 putative nicotinate-nucleotide- dimethylbenzimidazole phosphoribosyltransferase; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 3068593 4596335 Noca_2886 Nocardioides sp. JS614 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_924075.1 3067553 R 196162 CDS YP_924076.1 119717111 4596336 complement(3068607..3071018) 1 NC_008699.1 TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid a,c-diamide synthase; aminotransferase, class I and II; CobB/CobQ domain protein glutamine amidotransferase; KEGG: pac:PPA0438 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 3071018 4596336 Noca_2887 Nocardioides sp. JS614 cobyrinic acid a,c-diamide synthase YP_924076.1 3068607 R 196162 CDS YP_924077.1 119717112 4596337 complement(3071036..3071650) 1 NC_008699.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase 3071650 4596337 Noca_2888 Nocardioides sp. JS614 cob(I)yrinic acid a,c-diamide adenosyltransferase YP_924077.1 3071036 R 196162 CDS YP_924078.1 119717113 4596338 complement(3071650..3073611) 1 NC_008699.1 KEGG: tfu:Tfu_0313 Mg-chelatase subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; von Willebrand factor, type A; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; protoporphyrin IX magnesium-chelatase 3073611 4596338 Noca_2889 Nocardioides sp. JS614 protoporphyrin IX magnesium-chelatase YP_924078.1 3071650 R 196162 CDS YP_924079.1 119717114 4596339 3073846..3075042 1 NC_008699.1 KEGG: tfu:Tfu_0314 SAM (and some other nucleotide) binding motif; TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-6Y C5,15-methyltransferase 3075042 4596339 Noca_2890 Nocardioides sp. JS614 precorrin-6Y C5,15-methyltransferase YP_924079.1 3073846 D 196162 CDS YP_924080.1 119717115 4596340 complement(3075011..3075796) 1 NC_008699.1 TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: nfa:nfa50340 putative methyltransferase; precorrin-4 C(11)-methyltransferase 3075796 4596340 Noca_2891 Nocardioides sp. JS614 precorrin-4 C(11)-methyltransferase YP_924080.1 3075011 R 196162 CDS YP_924081.1 119717116 4596341 complement(3075793..3077316) 1 NC_008699.1 TIGRFAM: precorrin-3B C17-methyltransferase; precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: tfu:Tfu_0316 precorrin-3B C17-methyltransferase region:precorrin-2 C20-methyltransferase; precorrin-3 methyltransferase / precorrin-2 C20-methyltransferase 3077316 4596341 Noca_2892 Nocardioides sp. JS614 precorrin-3 methyltransferase / precorrin-2 C20-methyltransferase YP_924081.1 3075793 R 196162 CDS YP_924082.1 119717117 4596342 complement(3077313..3077975) 1 NC_008699.1 PFAM: Precorrin-8X methylmutase CbiC/CobH; KEGG: tfu:Tfu_0317 precorrin-8X methylmutase; precorrin-8X methylmutase 3077975 4596342 Noca_2893 Nocardioides sp. JS614 precorrin-8X methylmutase YP_924082.1 3077313 R 196162 CDS YP_924083.1 119717118 4596343 complement(3077972..3078820) 1 NC_008699.1 PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; KEGG: tfu:Tfu_0318 cobalamin biosynthesis protein CobG, precorrin-3B synthase; nitrite/sulfite reductase hemoprotein subunit beta 3078820 4596343 Noca_2894 Nocardioides sp. JS614 nitrite/sulfite reductase hemoprotein subunit beta YP_924083.1 3077972 R 196162 CDS YP_924084.1 119717119 4596344 3079217..3080836 1 NC_008699.1 TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rba:RB12326 sensory histidine protein kinase; GAF sensor signal transduction histidine kinase 3080836 4596344 Noca_2895 Nocardioides sp. JS614 GAF sensor signal transduction histidine kinase YP_924084.1 3079217 D 196162 CDS YP_924085.1 119717120 4596345 3081193..3081459 1 NC_008699.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: rha:RHA1_ro03198 hypothetical protein; CopG/DNA-binding domain-containing protein 3081459 4596345 Noca_2896 Nocardioides sp. JS614 CopG/DNA-binding domain-containing protein YP_924085.1 3081193 D 196162 CDS YP_924086.1 119717121 4596346 complement(3081450..3081692) 1 NC_008699.1 hypothetical protein 3081692 4596346 Noca_2897 Nocardioides sp. JS614 hypothetical protein YP_924086.1 3081450 R 196162 CDS YP_924087.1 119717122 4596347 complement(3081849..3082298) 1 NC_008699.1 KEGG: rha:RHA1_ro00918 hypothetical protein; hypothetical protein 3082298 4596347 Noca_2898 Nocardioides sp. JS614 hypothetical protein YP_924087.1 3081849 R 196162 CDS YP_924088.1 119717123 4596348 complement(3082720..3083442) 1 NC_008699.1 hypothetical protein 3083442 4596348 Noca_2899 Nocardioides sp. JS614 hypothetical protein YP_924088.1 3082720 R 196162 CDS YP_924089.1 119717124 4596349 complement(3083439..3084212) 1 NC_008699.1 hypothetical protein 3084212 4596349 Noca_2900 Nocardioides sp. JS614 hypothetical protein YP_924089.1 3083439 R 196162 CDS YP_924090.1 119717125 4596350 complement(3084276..3085517) 1 NC_008699.1 PFAM: deoxyribonuclease/rho motif-related TRAM; KEGG: sma:SAV2389 putative RNA methyltransferase; deoxyribonuclease 3085517 4596350 Noca_2901 Nocardioides sp. JS614 deoxyribonuclease YP_924090.1 3084276 R 196162 CDS YP_924091.1 119717126 4596351 complement(3085514..3087571) 1 NC_008699.1 KEGG: nfa:nfa37450 putative transporter; putative transporter 3087571 4596351 Noca_2902 Nocardioides sp. JS614 putative transporter YP_924091.1 3085514 R 196162 CDS YP_924092.1 119717127 4596352 3087610..3088272 1 NC_008699.1 PFAM: TrkA-N domain protein; KEGG: sma:SAV2391 putative potassium transporter; TrkA domain-containing protein 3088272 4596352 Noca_2903 Nocardioides sp. JS614 TrkA domain-containing protein YP_924092.1 3087610 D 196162 CDS YP_924093.1 119717128 4596353 3088280..3088951 1 NC_008699.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: pac:PPA1057 Trk system potassium uptake protein; TrkA domain-containing protein 3088951 4596353 Noca_2904 Nocardioides sp. JS614 TrkA domain-containing protein YP_924093.1 3088280 D 196162 CDS YP_924094.1 119717129 4596354 complement(3088956..3089672) 1 NC_008699.1 KEGG: tfu:Tfu_1932 hypothetical protein; hypothetical protein 3089672 4596354 Noca_2905 Nocardioides sp. JS614 hypothetical protein YP_924094.1 3088956 R 196162 CDS YP_924095.1 119717130 4596355 complement(3089669..3090031) 1 NC_008699.1 PFAM: nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: sma:SAV2394 hypothetical protein; OB-fold, tRNA/helicase-type nucleic acid binding protein 3090031 4596355 Noca_2906 Nocardioides sp. JS614 OB-fold, tRNA/helicase-type nucleic acid binding protein YP_924095.1 3089669 R 196162 CDS YP_924096.1 119717131 4596356 complement(3090041..3090682) 1 NC_008699.1 KEGG: fra:Francci3_1319 conserved hypothetical protein; hypothetical protein 3090682 4596356 Noca_2907 Nocardioides sp. JS614 hypothetical protein YP_924096.1 3090041 R 196162 CDS YP_924097.1 119717132 4596357 complement(3090702..3091148) 1 NC_008699.1 KEGG: tfu:Tfu_1935 deoxyUTP pyrophosphatase subfamily 1; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase; deoxyuridine 5'-triphosphate nucleotidohydrolase 3091148 4596357 Noca_2908 Nocardioides sp. JS614 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_924097.1 3090702 R 196162 CDS YP_924098.1 119717133 4596358 3091202..3091663 1 NC_008699.1 KEGG: sma:SAV2401 secreted protein; secreted protein 3091663 4596358 Noca_2909 Nocardioides sp. JS614 secreted protein YP_924098.1 3091202 D 196162 CDS YP_924099.1 119717134 4596359 3091705..3092001 1 NC_008699.1 KEGG: fra:Francci3_1317 hypothetical protein; hypothetical protein 3092001 4596359 Noca_2910 Nocardioides sp. JS614 hypothetical protein YP_924099.1 3091705 D 196162 CDS YP_924100.1 119717135 4597412 complement(3092021..3092311) 1 NC_008699.1 KEGG: sma:SAV2403 hypothetical protein; hypothetical protein 3092311 4597412 Noca_2911 Nocardioides sp. JS614 hypothetical protein YP_924100.1 3092021 R 196162 CDS YP_924101.1 119717136 4597413 complement(3092482..3093360) 1 NC_008699.1 PFAM: inositol monophosphatase; KEGG: sco:SCO5860 SuhB protein; inositol-phosphate phosphatase 3093360 4597413 Noca_2912 Nocardioides sp. JS614 inositol-phosphate phosphatase YP_924101.1 3092482 R 196162 CDS YP_924102.1 119717137 4597414 complement(3093357..3094457) 1 NC_008699.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 3094457 hemH 4597414 hemH Nocardioides sp. JS614 ferrochelatase YP_924102.1 3093357 R 196162 CDS YP_924103.1 119717138 4597415 3094527..3095717 1 NC_008699.1 PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV2408 transmembrane efflux protein; major facilitator transporter 3095717 4597415 Noca_2914 Nocardioides sp. JS614 major facilitator transporter YP_924103.1 3094527 D 196162 CDS YP_924104.1 119717139 4597416 complement(3095854..3096489) 1 NC_008699.1 PFAM: protein of unknown function UPF0126; KEGG: nmu:Nmul_A0854 hypothetical protein; hypothetical protein 3096489 4597416 Noca_2915 Nocardioides sp. JS614 hypothetical protein YP_924104.1 3095854 R 196162 CDS YP_924105.1 119717140 4597417 3096613..3097569 1 NC_008699.1 KEGG: sma:SAV2411 DNA-binding protein; DNA-binding protein 3097569 4597417 Noca_2916 Nocardioides sp. JS614 DNA-binding protein YP_924105.1 3096613 D 196162 CDS YP_924106.1 119717141 4597418 3097623..3099620 1 NC_008699.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; KR; KEGG: hch:HCH_04995 short-chain alcohol dehydrogenase-like protein; short chain dehydrogenase 3099620 4597418 Noca_2917 Nocardioides sp. JS614 short chain dehydrogenase YP_924106.1 3097623 D 196162 CDS YP_924107.1 119717142 4597419 complement(3099645..3100475) 1 NC_008699.1 PFAM: Rhodanese domain protein; KEGG: nfa:nfa10240 putative thiosulfate sulfurtransferase; thiosulfate sulfurtransferase 3100475 4597419 Noca_2918 Nocardioides sp. JS614 thiosulfate sulfurtransferase YP_924107.1 3099645 R 196162 CDS YP_924108.1 119717143 4597420 3100519..3101172 1 NC_008699.1 catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 3101172 4597420 Noca_2919 Nocardioides sp. JS614 thymidine kinase YP_924108.1 3100519 D 196162 CDS YP_924109.1 119717144 4597421 complement(3101114..3102130) 1 NC_008699.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: nfa:pnf1290 hypothetical protein; hypothetical protein 3102130 4597421 Noca_2920 Nocardioides sp. JS614 hypothetical protein YP_924109.1 3101114 R 196162 CDS YP_924110.1 119717145 4597422 complement(3102138..3102419) 1 NC_008699.1 PFAM: protein of unknown function DUF156; KEGG: rha:RHA1_ro03538 hypothetical protein; hypothetical protein 3102419 4597422 Noca_2921 Nocardioides sp. JS614 hypothetical protein YP_924110.1 3102138 R 196162 CDS YP_924111.1 119717146 4597423 complement(3102500..3105286) 1 NC_008699.1 KEGG: atc:AGR_C_1708 copper-transporting ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein; copper-translocating P-type ATPase 3105286 4597423 Noca_2922 Nocardioides sp. JS614 copper-translocating P-type ATPase YP_924111.1 3102500 R 196162 CDS YP_924112.1 119717147 4597424 3105532..3105780 1 NC_008699.1 KEGG: ath:At2g05440_1 glycine-rich protein; hypothetical protein 3105780 4597424 Noca_2923 Nocardioides sp. JS614 hypothetical protein YP_924112.1 3105532 D 196162 CDS YP_924113.1 119717148 4597425 3105802..3106053 1 NC_008699.1 hypothetical protein 3106053 4597425 Noca_2924 Nocardioides sp. JS614 hypothetical protein YP_924113.1 3105802 D 196162 CDS YP_924114.1 119717149 4597426 complement(3106450..3108060) 1 NC_008699.1 PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: nfa:pnf1230 putative multicopper oxidase; multicopper oxidase, type 3 3108060 4597426 Noca_2925 Nocardioides sp. JS614 multicopper oxidase, type 3 YP_924114.1 3106450 R 196162 CDS YP_924115.1 119717150 4597427 complement(3108057..3108356) 1 NC_008699.1 KEGG: rha:RHA1_ro11202 hypothetical protein; hypothetical protein 3108356 4597427 Noca_2926 Nocardioides sp. JS614 hypothetical protein YP_924115.1 3108057 R 196162 CDS YP_924116.1 119717151 4597428 complement(3108483..3108818) 1 NC_008699.1 PFAM: regulatory protein, ArsR; KEGG: rha:RHA1_ro11232 probable transcriptional regulator, ArsR family; ArsR family transcriptional regulator 3108818 4597428 Noca_2927 Nocardioides sp. JS614 ArsR family transcriptional regulator YP_924116.1 3108483 R 196162 CDS YP_924117.1 119717152 4597429 complement(3108873..3109196) 1 NC_008699.1 KEGG: rha:RHA1_ro11231 hypothetical protein; hypothetical protein 3109196 4597429 Noca_2928 Nocardioides sp. JS614 hypothetical protein YP_924117.1 3108873 R 196162 CDS YP_924118.1 119717153 4597430 complement(3109196..3109588) 1 NC_008699.1 PFAM: protein of unknown function DUF202; KEGG: rha:RHA1_ro11230 hypothetical protein; hypothetical protein 3109588 4597430 Noca_2929 Nocardioides sp. JS614 hypothetical protein YP_924118.1 3109196 R 196162 CDS YP_924119.1 119717154 4597431 complement(3109588..3110724) 1 NC_008699.1 PFAM: beta-lactamase domain protein; SMART: Rhodanese domain protein; KEGG: rha:RHA1_ro11229 possible hydroxyacylglutathione hydrolase; beta-lactamase domain-containing protein 3110724 4597431 Noca_2930 Nocardioides sp. JS614 beta-lactamase domain-containing protein YP_924119.1 3109588 R 196162 CDS YP_924120.1 119717155 4597432 3110851..3111351 1 NC_008699.1 KEGG: rha:RHA1_ro11228 possible NADH dehydrogenase; putative NADH dehydrogenase 3111351 4597432 Noca_2931 Nocardioides sp. JS614 putative NADH dehydrogenase YP_924120.1 3110851 D 196162 CDS YP_924121.1 119717156 4597433 3111383..3111616 1 NC_008699.1 PFAM: SirA family protein; KEGG: rha:RHA1_ro11227 hypothetical protein; SirA family protein 3111616 4597433 Noca_2932 Nocardioides sp. JS614 SirA family protein YP_924121.1 3111383 D 196162 CDS YP_924122.1 119717157 4597434 3111624..3113141 1 NC_008699.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Polysulphide reductase, NrfD; KEGG: rha:RHA1_ro11226 probable polysulphide reductase; 4Fe-4S ferredoxin 3113141 4597434 Noca_2933 Nocardioides sp. JS614 4Fe-4S ferredoxin YP_924122.1 3111624 D 196162 CDS YP_924123.1 119717158 4597435 3113138..3115999 1 NC_008699.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: rha:RHA1_ro11225 hypothetical protein; formate dehydrogenase 3115999 4597435 Noca_2934 Nocardioides sp. JS614 formate dehydrogenase YP_924123.1 3113138 D 196162 CDS YP_924124.1 119717159 4597436 3115996..3117129 1 NC_008699.1 PFAM: protein of unknown function DUF59; KEGG: rha:RHA1_ro11224 possible ATPase; hypothetical protein 3117129 4597436 Noca_2935 Nocardioides sp. JS614 hypothetical protein YP_924124.1 3115996 D 196162 CDS YP_924125.1 119717160 4597437 3117134..3118660 1 NC_008699.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; sulphate transporter; KEGG: aeh:Mlg_1668 sulfate transporter; sulfate transporter 3118660 4597437 Noca_2936 Nocardioides sp. JS614 sulfate transporter YP_924125.1 3117134 D 196162 CDS YP_924126.1 119717161 4597438 complement(3118667..3120025) 1 NC_008699.1 PFAM: beta-lactamase domain protein; SMART: Rhodanese domain protein; KEGG: rha:RHA1_ro11243 hypothetical protein; beta-lactamase domain-containing protein 3120025 4597438 Noca_2937 Nocardioides sp. JS614 beta-lactamase domain-containing protein YP_924126.1 3118667 R 196162 CDS YP_924127.1 119717162 4597439 complement(3120118..3121203) 1 NC_008699.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: cef:CE0279 putative sensor kinase; ATPase domain-containing protein 3121203 4597439 Noca_2938 Nocardioides sp. JS614 ATPase domain-containing protein YP_924127.1 3120118 R 196162 CDS YP_924128.1 119717163 4597440 complement(3121200..3121898) 1 NC_008699.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sth:STH750 two-component response regulator, probably involved in phosphate sensing; response regulator receiver 3121898 4597440 Noca_2939 Nocardioides sp. JS614 response regulator receiver YP_924128.1 3121200 R 196162 CDS YP_924129.1 119717164 4597441 complement(3121936..3122448) 1 NC_008699.1 KEGG: chy:CHY_1866 hypothetical protein; hypothetical protein 3122448 4597441 Noca_2940 Nocardioides sp. JS614 hypothetical protein YP_924129.1 3121936 R 196162 CDS YP_924130.1 119717165 4597442 3122610..3123842 1 NC_008699.1 hypothetical protein 3123842 4597442 Noca_2941 Nocardioides sp. JS614 hypothetical protein YP_924130.1 3122610 D 196162 CDS YP_924131.1 119717166 4597443 complement(3123811..3125268) 1 NC_008699.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; PAS fold domain protein; KEGG: dge:Dgeo_0556 multi-sensor signal transduction histidine kinase; ATPase domain-containing protein 3125268 4597443 Noca_2942 Nocardioides sp. JS614 ATPase domain-containing protein YP_924131.1 3123811 R 196162 CDS YP_924132.1 119717167 4597444 complement(3125279..3125926) 1 NC_008699.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: dra:DR0987 DNA-binding response regulator; two component LuxR family transcriptional regulator 3125926 4597444 Noca_2943 Nocardioides sp. JS614 two component LuxR family transcriptional regulator YP_924132.1 3125279 R 196162 CDS YP_924133.1 119717168 4597445 3126746..3127774 1 NC_008699.1 PFAM: Cytochrome b/b6, N-terminal domain; KEGG: oih:OB1775 menaquinol-cytochrome-c reductase cytochrome b subunit; cytochrome b/b6 domain-containing protein 3127774 4597445 Noca_2944 Nocardioides sp. JS614 cytochrome b/b6 domain-containing protein YP_924133.1 3126746 D 196162 CDS YP_924134.1 119717169 4597446 complement(3128050..3129168) 1 NC_008699.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: tfu:Tfu_2126 hypothetical protein; type I phosphodiesterase/nucleotide pyrophosphatase 3129168 4597446 Noca_2945 Nocardioides sp. JS614 type I phosphodiesterase/nucleotide pyrophosphatase YP_924134.1 3128050 R 196162 CDS YP_924135.1 119717170 4597447 complement(3129165..3129761) 1 NC_008699.1 KEGG: sco:SCO5843 hypothetical protein; hypothetical protein 3129761 4597447 Noca_2946 Nocardioides sp. JS614 hypothetical protein YP_924135.1 3129165 R 196162 CDS YP_924136.1 119717171 4595731 complement(3129808..3130434) 1 NC_008699.1 KEGG: sme:SMb20814 hypothetical protein; hypothetical protein 3130434 4595731 Noca_2947 Nocardioides sp. JS614 hypothetical protein YP_924136.1 3129808 R 196162 CDS YP_924137.1 119717172 4595732 complement(3130467..3133166) 1 NC_008699.1 PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: tfu:Tfu_2128 hypothetical protein; CoA-binding domain-containing protein 3133166 4595732 Noca_2948 Nocardioides sp. JS614 CoA-binding domain-containing protein YP_924137.1 3130467 R 196162 CDS YP_924138.1 119717173 4595733 3133283..3135763 1 NC_008699.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 3135763 4595733 Noca_2949 Nocardioides sp. JS614 DNA topoisomerase IV subunit A YP_924138.1 3133283 D 196162 CDS YP_924139.1 119717174 4595734 3135768..3136466 1 NC_008699.1 KEGG: rha:RHA1_ro08664 possible lipoprotein; hypothetical protein 3136466 4595734 Noca_2950 Nocardioides sp. JS614 hypothetical protein YP_924139.1 3135768 D 196162 CDS YP_924140.1 119717175 4595735 3136463..3138217 1 NC_008699.1 PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro08665 probable multidrug resistance transporter, MFS superfamily; major facilitator transporter 3138217 4595735 Noca_2951 Nocardioides sp. JS614 major facilitator transporter YP_924140.1 3136463 D 196162 CDS YP_924141.1 119717176 4595736 3138239..3138739 1 NC_008699.1 PFAM: carbonic anhydrase; KEGG: tfu:Tfu_2132 carbonic anhydrase, putative; carbonic anhydrase 3138739 4595736 Noca_2952 Nocardioides sp. JS614 carbonic anhydrase YP_924141.1 3138239 D 196162 CDS YP_924142.1 119717177 4595737 complement(3138749..3139957) 1 NC_008699.1 TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: lxx:Lxx03420 acetate kinase; acetate kinase 3139957 4595737 Noca_2953 Nocardioides sp. JS614 acetate kinase YP_924142.1 3138749 R 196162 CDS YP_924143.1 119717178 4595738 complement(3139954..3142044) 1 NC_008699.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 3142044 4595738 Noca_2954 Nocardioides sp. JS614 phosphate acetyltransferase YP_924143.1 3139954 R 196162 CDS YP_924144.1 119717179 4595739 complement(3142137..3142490) 1 NC_008699.1 TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: sco:SCO7046 putative integral membrane protein; camphor resistance protein CrcB 3142490 4595739 Noca_2955 Nocardioides sp. JS614 camphor resistance protein CrcB YP_924144.1 3142137 R 196162 CDS YP_924145.1 119717180 4595740 complement(3142505..3142891) 1 NC_008699.1 PFAM: protein of unknown function DUF190; KEGG: sco:SCO7045 hypothetical protein; hypothetical protein 3142891 4595740 Noca_2956 Nocardioides sp. JS614 hypothetical protein YP_924145.1 3142505 R 196162 CDS YP_924146.1 119717181 4595741 complement(3142888..3143400) 1 NC_008699.1 TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: sma:SAV1322 putative integral membrane protein; camphor resistance protein CrcB 3143400 4595741 Noca_2957 Nocardioides sp. JS614 camphor resistance protein CrcB YP_924146.1 3142888 R 196162 CDS YP_924147.1 119717182 4595742 complement(3143447..3145579) 1 NC_008699.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 3145579 4595742 Noca_2958 Nocardioides sp. JS614 DNA topoisomerase IV subunit B YP_924147.1 3143447 R 196162 CDS YP_924148.1 119717183 4595743 3145885..3146118 1 NC_008699.1 KEGG: tfu:Tfu_2135 hypothetical protein; hypothetical protein 3146118 4595743 Noca_2959 Nocardioides sp. JS614 hypothetical protein YP_924148.1 3145885 D 196162 CDS YP_924149.1 119717184 4595744 3146208..3146684 1 NC_008699.1 KEGG: nfa:nfa53640 hypothetical protein; hypothetical protein 3146684 4595744 Noca_2960 Nocardioides sp. JS614 hypothetical protein YP_924149.1 3146208 D 196162 CDS YP_924150.1 119717185 4595745 3146684..3147511 1 NC_008699.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: rha:RHA1_ro06410 hypothetical protein; hypothetical protein 3147511 4595745 Noca_2961 Nocardioides sp. JS614 hypothetical protein YP_924150.1 3146684 D 196162 CDS YP_924151.1 119717186 4595746 3147556..3148275 1 NC_008699.1 hypothetical protein 3148275 4595746 Noca_2962 Nocardioides sp. JS614 hypothetical protein YP_924151.1 3147556 D 196162 CDS YP_924152.1 119717187 4595747 complement(3148288..3149775) 1 NC_008699.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; RNA polymerase sigma factor 3149775 4595747 Noca_2963 Nocardioides sp. JS614 RNA polymerase sigma factor YP_924152.1 3148288 R 196162 CDS YP_924153.1 119717188 4595748 complement(3150053..3150619) 1 NC_008699.1 PFAM: HhH-GPD family protein; KEGG: mbo:Mb1187 hypothetical protein; HhH-GPD family protein 3150619 4595748 Noca_2964 Nocardioides sp. JS614 HhH-GPD family protein YP_924153.1 3150053 R 196162 CDS YP_924154.1 119717189 4595749 3150674..3151252 1 NC_008699.1 PFAM: regulatory protein, TetR; KEGG: fal:FRAAL4786 putative transcriptional regulator; regulatory protein TetR 3151252 4595749 Noca_2965 Nocardioides sp. JS614 regulatory protein TetR YP_924154.1 3150674 D 196162 CDS YP_924155.1 119717190 4595750 3151249..3152475 1 NC_008699.1 TIGRFAM: glycosyltransferase, MGT family; PFAM: UDP-glucuronosyl/UDP-glucosyltransferase; glycosyl transferase, family 28; Glycosyltransferase 28, C-terminal domain; KEGG: mmc:Mmcs_1269 glycosyltransferase, MGT family; glycosyl transferase family protein 3152475 4595750 Noca_2966 Nocardioides sp. JS614 glycosyl transferase family protein YP_924155.1 3151249 D 196162 CDS YP_924156.1 119717191 4595751 complement(3152502..3152903) 1 NC_008699.1 PFAM: UspA domain protein; KEGG: rfr:Rfer_0629 UspA; UspA domain-containing protein 3152903 4595751 Noca_2967 Nocardioides sp. JS614 UspA domain-containing protein YP_924156.1 3152502 R 196162 CDS YP_924157.1 119717192 4595752 3153047..3153469 1 NC_008699.1 hypothetical protein 3153469 4595752 Noca_2968 Nocardioides sp. JS614 hypothetical protein YP_924157.1 3153047 D 196162 CDS YP_924158.1 119717193 4595753 complement(3153489..3154952) 1 NC_008699.1 PFAM: glutamate--cysteine ligase, GCS2; KEGG: sco:SCO7509 hypothetical protein; glutamate--cysteine ligase 3154952 4595753 Noca_2969 Nocardioides sp. JS614 glutamate--cysteine ligase YP_924158.1 3153489 R 196162 CDS YP_924159.1 119717194 4595754 complement(3154962..3156110) 1 NC_008699.1 TIGRFAM: uncharacterized enzyme; PFAM: glutamate--cysteine ligase, GCS2; KEGG: sco:SCO7331 hypothetical protein; hypothetical protein 3156110 4595754 Noca_2970 Nocardioides sp. JS614 hypothetical protein YP_924159.1 3154962 R 196162 CDS YP_924160.1 119717195 4595755 complement(3156281..3157129) 1 NC_008699.1 KEGG: tfu:Tfu_2217 hypothetical protein; hypothetical protein 3157129 4595755 Noca_2971 Nocardioides sp. JS614 hypothetical protein YP_924160.1 3156281 R 196162 CDS YP_924161.1 119717196 4595610 3157226..3158461 1 NC_008699.1 PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: fra:Francci3_3532 phage integrase; phage integrase family protein 3158461 4595610 Noca_2972 Nocardioides sp. JS614 phage integrase family protein YP_924161.1 3157226 D 196162 CDS YP_924162.1 119717197 4595611 3158470..3160863 1 NC_008699.1 PFAM: phage integrase family protein; KEGG: rha:RHA1_ro10276 possible DNA integrase/recombinase; phage integrase family protein 3160863 4595611 Noca_2973 Nocardioides sp. JS614 phage integrase family protein YP_924162.1 3158470 D 196162 CDS YP_924163.1 119717198 4595612 3161348..3161704 1 NC_008699.1 hypothetical protein 3161704 4595612 Noca_2974 Nocardioides sp. JS614 hypothetical protein YP_924163.1 3161348 D 196162 CDS YP_924164.1 119717199 4595613 3162200..3163531 1 NC_008699.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 3163531 4595613 Noca_2975 Nocardioides sp. JS614 DNA polymerase IV YP_924164.1 3162200 D 196162 CDS YP_924165.1 119717200 4595614 complement(3163476..3164372) 1 NC_008699.1 TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: sma:SAV6937 antagonist of KipI; urea amidolyase-like protein 3164372 4595614 Noca_2976 Nocardioides sp. JS614 urea amidolyase-like protein YP_924165.1 3163476 R 196162 CDS YP_924166.1 119717201 4595615 complement(3164369..3164980) 1 NC_008699.1 PFAM: Allophanate hydrolase subunit 1; KEGG: sma:SAV6938 inhibitor of KinA; allophanate hydrolase subunit 1 3164980 4595615 Noca_2977 Nocardioides sp. JS614 allophanate hydrolase subunit 1 YP_924166.1 3164369 R 196162 CDS YP_924167.1 119717202 4595616 complement(3165346..3166041) 1 NC_008699.1 PFAM: LamB/YcsF family protein; KEGG: sma:SAV6939 putative lactam utilization protein; LamB/YcsF family protein 3166041 4595616 Noca_2978 Nocardioides sp. JS614 LamB/YcsF family protein YP_924167.1 3165346 R 196162 CDS YP_924168.1 119717203 4595617 3166065..3168245 1 NC_008699.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller; KEGG: nfa:nfa5630 putative protease; oligopeptidase B 3168245 4595617 Noca_2979 Nocardioides sp. JS614 oligopeptidase B YP_924168.1 3166065 D 196162 CDS YP_924169.1 119717204 4595618 3168409..3169368 1 NC_008699.1 PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: pac:PPA1031 RNA polymerase principal sigma factor HrdD; sigma-70 region 3 domain-containing protein 3169368 4595618 Noca_2980 Nocardioides sp. JS614 sigma-70 region 3 domain-containing protein YP_924169.1 3168409 D 196162 CDS YP_924170.1 119717205 4595619 complement(3169382..3169972) 1 NC_008699.1 KEGG: sco:SCO1996 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; dephospho-CoA kinase 3169972 4595619 Noca_2981 Nocardioides sp. JS614 dephospho-CoA kinase YP_924170.1 3169382 R 196162 CDS YP_924171.1 119717206 4595620 complement(3170008..3170412) 1 NC_008699.1 hypothetical protein 3170412 4595620 Noca_2982 Nocardioides sp. JS614 hypothetical protein YP_924171.1 3170008 R 196162 CDS YP_924172.1 119717207 4595621 complement(3170458..3172794) 1 NC_008699.1 KEGG: ade:Adeh_2705 response regulator receiver; hypothetical protein 3172794 4595621 Noca_2983 Nocardioides sp. JS614 hypothetical protein YP_924172.1 3170458 R 196162 CDS YP_924173.1 119717208 4595622 3172990..3174627 1 NC_008699.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: aba:Acid345_1672 methyl-accepting chemotaxis sensory transducer; chemotaxis sensory transducer protein 3174627 4595622 Noca_2984 Nocardioides sp. JS614 chemotaxis sensory transducer protein YP_924173.1 3172990 D 196162 CDS YP_924174.1 119717209 4595623 complement(3174624..3175598) 1 NC_008699.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: fal:FRAAL1787 hypothetical protein; NAD-dependent epimerase/dehydratase 3175598 4595623 Noca_2985 Nocardioides sp. JS614 NAD-dependent epimerase/dehydratase YP_924174.1 3174624 R 196162 CDS YP_924175.1 119717210 4595624 3175710..3176435 1 NC_008699.1 PFAM: regulatory protein, TetR; KEGG: sma:SAV1468 TetR-family transcriptional regulator; regulatory protein TetR 3176435 4595624 Noca_2986 Nocardioides sp. JS614 regulatory protein TetR YP_924175.1 3175710 D 196162 CDS YP_924176.1 119717211 4595625 3176432..3177733 1 NC_008699.1 PFAM: AMP-dependent synthetase and ligase; KEGG: fal:FRAAL1640 putative acyl-CoA synthetase, long-chain fatty acid:CoA ligase; AMP-dependent synthetase and ligase 3177733 4595625 Noca_2987 Nocardioides sp. JS614 AMP-dependent synthetase and ligase YP_924176.1 3176432 D 196162 CDS YP_924177.1 119717212 4595626 complement(3177792..3178736) 1 NC_008699.1 PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; KEGG: sma:SAV3030 AraC-family transcriptional regulator; transcriptional regulator 3178736 4595626 Noca_2988 Nocardioides sp. JS614 transcriptional regulator YP_924177.1 3177792 R 196162 CDS YP_924178.1 119717213 4595627 complement(3179063..3180535) 1 NC_008699.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 3180535 rpsA 4595627 rpsA Nocardioides sp. JS614 30S ribosomal protein S1 YP_924178.1 3179063 R 196162 CDS YP_924179.1 119717214 4595628 3180748..3181557 1 NC_008699.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: tfu:Tfu_0150 hypothetical protein; type 11 methyltransferase 3181557 4595628 Noca_2990 Nocardioides sp. JS614 type 11 methyltransferase YP_924179.1 3180748 D 196162 CDS YP_924180.1 119717215 4595629 complement(3181587..3182549) 1 NC_008699.1 KEGG: rha:RHA1_ro05190 hypothetical protein; hypothetical protein 3182549 4595629 Noca_2991 Nocardioides sp. JS614 hypothetical protein YP_924180.1 3181587 R 196162 CDS YP_924181.1 119717216 4595630 3182625..3183314 1 NC_008699.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sus:Acid_4357 methyltransferase type 11; type 11 methyltransferase 3183314 4595630 Noca_2992 Nocardioides sp. JS614 type 11 methyltransferase YP_924181.1 3182625 D 196162 CDS YP_924182.1 119717217 4595631 complement(3183339..3184379) 1 NC_008699.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: aba:Acid345_3613 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 3184379 4595631 Noca_2993 Nocardioides sp. JS614 NAD-dependent epimerase/dehydratase YP_924182.1 3183339 R 196162 CDS YP_924183.1 119717218 4595632 complement(3184376..3185146) 1 NC_008699.1 PFAM: glycosyl transferase, family 2; KEGG: ava:Ava_3351 glycosyl transferase, family 2; glycosyl transferase family protein 3185146 4595632 Noca_2994 Nocardioides sp. JS614 glycosyl transferase family protein YP_924183.1 3184376 R 196162 CDS YP_924184.1 119717219 4595633 complement(3185143..3186342) 1 NC_008699.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: pfu:PF1631 NDP-sugar dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase 3186342 4595633 Noca_2995 Nocardioides sp. JS614 UDP-glucose/GDP-mannose dehydrogenase YP_924184.1 3185143 R 196162 CDS YP_924185.1 119717220 4595634 3186471..3188303 1 NC_008699.1 KEGG: nfa:nfa24300 hypothetical protein; hypothetical protein 3188303 4595634 Noca_2996 Nocardioides sp. JS614 hypothetical protein YP_924185.1 3186471 D 196162 CDS YP_924186.1 119717221 4595635 3188300..3189529 1 NC_008699.1 PFAM: acyltransferase 3; KEGG: cef:CE2680 hypothetical protein; acyltransferase 3 3189529 4595635 Noca_2997 Nocardioides sp. JS614 acyltransferase 3 YP_924186.1 3188300 D 196162 CDS YP_924187.1 119717222 4595636 complement(3189427..3193455) 1 NC_008699.1 KEGG: nfa:nfa54700 hypothetical protein; hypothetical protein 3193455 4595636 Noca_2998 Nocardioides sp. JS614 hypothetical protein YP_924187.1 3189427 R 196162 CDS YP_924188.1 119717223 4595637 complement(3193539..3194279) 1 NC_008699.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: tfu:Tfu_2465 hypothetical protein; type 11 methyltransferase 3194279 4595637 Noca_2999 Nocardioides sp. JS614 type 11 methyltransferase YP_924188.1 3193539 R 196162 CDS YP_924189.1 119717224 4595638 3194319..3195473 1 NC_008699.1 PFAM: glycosyl transferase, group 1; KEGG: rha:RHA1_ro05187 possible glycosyl transferase; group 1 glycosyl transferase 3195473 4595638 Noca_3000 Nocardioides sp. JS614 group 1 glycosyl transferase YP_924189.1 3194319 D 196162 CDS YP_924190.1 119717225 4595639 complement(3195670..3197337) 1 NC_008699.1 KEGG: tfu:Tfu_2469 hypothetical protein; hypothetical protein 3197337 4595639 Noca_3001 Nocardioides sp. JS614 hypothetical protein YP_924190.1 3195670 R 196162 CDS YP_924191.1 119717226 4595640 3197391..3198698 1 NC_008699.1 PFAM: polysaccharide biosynthesis protein; KEGG: rha:RHA1_ro05189 possible xylose transporter; polysaccharide biosynthesis protein 3198698 4595640 Noca_3002 Nocardioides sp. JS614 polysaccharide biosynthesis protein YP_924191.1 3197391 D 196162 CDS YP_924192.1 119717227 4595641 complement(3198661..3200469) 1 NC_008699.1 PFAM: glycoside hydrolase 15-related; KEGG: sco:SCO1830 hypothetical protein; glycoside hydrolase 15-like protein 3200469 4595641 Noca_3003 Nocardioides sp. JS614 glycoside hydrolase 15-like protein YP_924192.1 3198661 R 196162 CDS YP_924193.1 119717228 4595642 complement(3200493..3200975) 1 NC_008699.1 KEGG: ade:Adeh_3192 hypothetical protein; hypothetical protein 3200975 4595642 Noca_3004 Nocardioides sp. JS614 hypothetical protein YP_924193.1 3200493 R 196162 CDS YP_924194.1 119717229 4596452 complement(3201060..3202076) 1 NC_008699.1 PFAM: luciferase family protein; KEGG: mlo:mll2315 alkanal monooxygenase (bacterial liciferase alpha chain) like protein; luciferase family protein 3202076 4596452 Noca_3005 Nocardioides sp. JS614 luciferase family protein YP_924194.1 3201060 R 196162 CDS YP_924195.1 119717230 4596453 complement(3202076..3204745) 1 NC_008699.1 KEGG: nfa:nfa18750 putative DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2; DNA polymerase I 3204745 4596453 Noca_3006 Nocardioides sp. JS614 DNA polymerase I YP_924195.1 3202076 R 196162 CDS YP_924196.1 119717231 4596454 3204788..3205255 1 NC_008699.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: sma:SAV6225 hypothetical protein; hypothetical protein 3205255 4596454 Noca_3007 Nocardioides sp. JS614 hypothetical protein YP_924196.1 3204788 D 196162 CDS YP_924197.1 119717232 4596455 complement(3205263..3205838) 1 NC_008699.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3205838 4596455 Noca_3008 Nocardioides sp. JS614 N-acetyltransferase GCN5 YP_924197.1 3205263 R 196162 CDS YP_924198.1 119717233 4596456 3205949..3206695 1 NC_008699.1 PFAM: protein of unknown function DUF554; KEGG: tfu:Tfu_1187 conserved hypothetical protein; hypothetical protein 3206695 4596456 Noca_3009 Nocardioides sp. JS614 hypothetical protein YP_924198.1 3205949 D 196162 CDS YP_924199.1 119717234 4596457 3206705..3207589 1 NC_008699.1 PFAM: extracellular solute-binding protein, family 3; SMART: ionotropic glutamate receptor; KEGG: sma:SAV6400 putative ABC transporter substrate-binding protein; extracellular solute-binding protein 3207589 4596457 Noca_3010 Nocardioides sp. JS614 extracellular solute-binding protein YP_924199.1 3206705 D 196162 CDS YP_924200.1 119717235 4596458 3207586..3208380 1 NC_008699.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV6401 putative ABC transporter permease protein; polar amino acid ABC transporter, inner membrane subunit 3208380 4596458 Noca_3011 Nocardioides sp. JS614 polar amino acid ABC transporter, inner membrane subunit YP_924200.1 3207586 D 196162 CDS YP_924201.1 119717236 4596459 3208377..3209111 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV6402 putative ABC transporter ATP-binding protein; ABC transporter-like protein 3209111 4596459 Noca_3012 Nocardioides sp. JS614 ABC transporter-like protein YP_924201.1 3208377 D 196162 CDS YP_924202.1 119717237 4596460 3209209..3210711 1 NC_008699.1 PFAM: inner-membrane translocator; KEGG: tfu:Tfu_1182 branched-chain amino acid ABC-type transport system permease components; inner-membrane translocator 3210711 4596460 Noca_3013 Nocardioides sp. JS614 inner-membrane translocator YP_924202.1 3209209 D 196162 CDS YP_924203.1 119717238 4596461 3210722..3211714 1 NC_008699.1 PFAM: inner-membrane translocator; KEGG: tfu:Tfu_1183 branched-chain amino acid transport system permease protein; inner-membrane translocator 3211714 4596461 Noca_3014 Nocardioides sp. JS614 inner-membrane translocator YP_924203.1 3210722 D 196162 CDS YP_924204.1 119717239 4596462 3211704..3212687 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rha:RHA1_ro00993 ABC branched-chain amino acid transporter, ATP-binding component; ABC transporter-like protein 3212687 4596462 Noca_3015 Nocardioides sp. JS614 ABC transporter-like protein YP_924204.1 3211704 D 196162 CDS YP_924205.1 119717240 4596463 3212680..3213462 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rha:RHA1_ro00994 ABC branched-chain amino acid transport, ATP-binding component; ABC transporter-like protein 3213462 4596463 Noca_3016 Nocardioides sp. JS614 ABC transporter-like protein YP_924205.1 3212680 D 196162 CDS YP_924206.1 119717241 4596464 complement(3213538..3214818) 1 NC_008699.1 PFAM: Extracellular ligand-binding receptor; KEGG: rha:RHA1_ro00995 probable branched-chain amino acid ABC transporter binding protein; extracellular ligand-binding receptor 3214818 4596464 Noca_3017 Nocardioides sp. JS614 extracellular ligand-binding receptor YP_924206.1 3213538 R 196162 CDS YP_924207.1 119717242 4596465 complement(3215009..3215632) 1 NC_008699.1 PFAM: response regulator receiver; ANTAR domain protein; KEGG: tfu:Tfu_1181 response regulator receiver; response regulator receiver 3215632 4596465 Noca_3018 Nocardioides sp. JS614 response regulator receiver YP_924207.1 3215009 R 196162 CDS YP_924208.1 119717243 4596467 3215815..3216549 1 NC_008699.1 KEGG: sma:SAV6218 hypothetical protein; hypothetical protein 3216549 4596467 Noca_3019 Nocardioides sp. JS614 hypothetical protein YP_924208.1 3215815 D 196162 CDS YP_924209.1 119717244 4596468 complement(3216553..3218016) 1 NC_008699.1 PFAM: pyruvate kinase; KEGG: sma:SAV6217 putative pyruvate kinase; pyruvate kinase 3218016 4596468 Noca_3020 Nocardioides sp. JS614 pyruvate kinase YP_924209.1 3216553 R 196162 CDS YP_924210.1 119717245 4596469 complement(3218119..3219600) 1 NC_008699.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 3219600 gltD 4596469 gltD Nocardioides sp. JS614 glutamate synthase subunit beta YP_924210.1 3218119 R 196162 CDS YP_924211.1 119717246 4596470 complement(3219633..3224192) 1 NC_008699.1 PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: sco:SCO2026 putative glutamate synthase large subunit; glutamate synthase (NADH) large subunit 3224192 4596470 Noca_3022 Nocardioides sp. JS614 glutamate synthase (NADH) large subunit YP_924211.1 3219633 R 196162 CDS YP_924212.1 119717247 4596471 complement(3224299..3225243) 1 NC_008699.1 PFAM: prolipoprotein diacylglyceryl transferase; KEGG: sco:SCO7822 probable prolipoprotein diacylglyceryl transferase.; prolipoprotein diacylglyceryl transferase 3225243 4596471 Noca_3023 Nocardioides sp. JS614 prolipoprotein diacylglyceryl transferase YP_924212.1 3224299 R 196162 CDS YP_924213.1 119717248 4596472 complement(3225240..3225872) 1 NC_008699.1 PFAM: electron transport protein SCO1/SenC; KEGG: fra:Francci3_2499 electron transport protein SCO1/SenC; electron transport protein SCO1/SenC 3225872 4596472 Noca_3024 Nocardioides sp. JS614 electron transport protein SCO1/SenC YP_924213.1 3225240 R 196162 CDS YP_924214.1 119717249 4596473 complement(3225856..3226680) 1 NC_008699.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 3226680 trpA 4596473 trpA Nocardioides sp. JS614 tryptophan synthase subunit alpha YP_924214.1 3225856 R 196162 CDS YP_924215.1 119717250 4596474 complement(3226677..3227957) 1 NC_008699.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 3227957 4596474 Noca_3026 Nocardioides sp. JS614 tryptophan synthase subunit beta YP_924215.1 3226677 R 196162 CDS YP_924216.1 119717251 4596475 complement(3227954..3228736) 1 NC_008699.1 PFAM: Indole-3-glycerol phosphate synthase; KEGG: tfu:Tfu_1164 indole-3-glycerol-phosphate synthase; indole-3-glycerol phosphate synthase 3228736 4596475 Noca_3027 Nocardioides sp. JS614 indole-3-glycerol phosphate synthase YP_924216.1 3227954 R 196162 CDS YP_924217.1 119717252 4596476 3228887..3229288 1 NC_008699.1 KEGG: aba:Acid345_1888 hypothetical protein; hypothetical protein 3229288 4596476 Noca_3028 Nocardioides sp. JS614 hypothetical protein YP_924217.1 3228887 D 196162 CDS YP_924218.1 119717253 4596477 complement(3229365..3229748) 1 NC_008699.1 KEGG: rha:RHA1_ro04356 hypothetical protein; hypothetical protein 3229748 4596477 Noca_3029 Nocardioides sp. JS614 hypothetical protein YP_924218.1 3229365 R 196162 CDS YP_924219.1 119717254 4596478 complement(3229825..3230025) 1 NC_008699.1 KEGG: lxx:Lxx11270 mambrane protein; mambrane protein 3230025 4596478 Noca_3030 Nocardioides sp. JS614 mambrane protein YP_924219.1 3229825 R 196162 CDS YP_924220.1 119717255 4596479 complement(3230095..3230640) 1 NC_008699.1 KEGG: tfu:Tfu_1160 hypothetical protein; hypothetical protein 3230640 4596479 Noca_3031 Nocardioides sp. JS614 hypothetical protein YP_924220.1 3230095 R 196162 CDS YP_924221.1 119717256 4596480 complement(3230666..3231037) 1 NC_008699.1 PFAM: phosphoribosyl-AMP cyclohydrolase; KEGG: fra:Francci3_3021 phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-AMP cyclohydrolase 3231037 4596480 Noca_3032 Nocardioides sp. JS614 phosphoribosyl-AMP cyclohydrolase YP_924221.1 3230666 R 196162 CDS YP_924222.1 119717257 4596481 complement(3231034..3232842) 1 NC_008699.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tfu:Tfu_1158 ABC-type multidrug transport system ATPase and permease components; ABC transporter-like protein 3232842 4596481 Noca_3033 Nocardioides sp. JS614 ABC transporter-like protein YP_924222.1 3231034 R 196162 CDS YP_924223.1 119717258 4596482 complement(3232839..3234632) 1 NC_008699.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tfu:Tfu_1157 ABC-type multidrug transport system ATPase and permease components; ABC transporter-like protein 3234632 4596482 Noca_3034 Nocardioides sp. JS614 ABC transporter-like protein YP_924223.1 3232839 R 196162 CDS YP_924224.1 119717259 4596483 3234748..3235380 1 NC_008699.1 KEGG: nfa:nfa38650 hypothetical protein; hypothetical protein 3235380 4596483 Noca_3035 Nocardioides sp. JS614 hypothetical protein YP_924224.1 3234748 D 196162 CDS YP_924225.1 119717260 4596484 3235527..3236771 1 NC_008699.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dsy:DSY4468 hypothetical protein; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 3236771 4596484 Noca_3036 Nocardioides sp. JS614 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_924225.1 3235527 D 196162 CDS YP_924226.1 119717261 4596485 3236776..3237090 1 NC_008699.1 PFAM: DsrC family protein; KEGG: mta:Moth_1632 DsrC-like protein; DsrC family protein 3237090 4596485 Noca_3037 Nocardioides sp. JS614 DsrC family protein YP_924226.1 3236776 D 196162 CDS YP_924227.1 119717262 4596486 3237104..3237613 1 NC_008699.1 KEGG: dsy:DSY4470 hypothetical protein; hypothetical protein 3237613 4596486 Noca_3038 Nocardioides sp. JS614 hypothetical protein YP_924227.1 3237104 D 196162 CDS YP_924228.1 119717263 4596487 complement(3237797..3238573) 1 NC_008699.1 TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis; KEGG: sma:SAV6160 putative cyclase; imidazole glycerol phosphate synthase subunit hisF 3238573 4596487 Noca_3039 Nocardioides sp. JS614 imidazole glycerol phosphate synthase subunit hisF YP_924228.1 3237797 R 196162 CDS YP_924229.1 119717264 4596488 complement(3238570..3239304) 1 NC_008699.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide and the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)anthranilate; involved in histidine and tryptophan biosynthesis; phosphoribosyl isomerase A 3239304 4596488 Noca_3040 Nocardioides sp. JS614 phosphoribosyl isomerase A YP_924229.1 3238570 R 196162 CDS YP_924230.1 119717265 4600158 complement(3239314..3239643) 1 NC_008699.1 hypothetical protein 3239643 4600158 Noca_3041 Nocardioides sp. JS614 hypothetical protein YP_924230.1 3239314 R 196162 CDS YP_924231.1 119717266 4600159 complement(3239663..3240301) 1 NC_008699.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 3240301 hisH 4600159 hisH Nocardioides sp. JS614 imidazole glycerol phosphate synthase subunit HisH YP_924231.1 3239663 R 196162 CDS YP_924232.1 119717267 4600160 complement(3240298..3240906) 1 NC_008699.1 PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: blo:BL1297 imidazoleglycerol-phosphate dehydratase; imidazoleglycerol-phosphate dehydratase 3240906 4600160 Noca_3043 Nocardioides sp. JS614 imidazoleglycerol-phosphate dehydratase YP_924232.1 3240298 R 196162 CDS YP_924233.1 119717268 4600161 complement(3240906..3241994) 1 NC_008699.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 3241994 4600161 Noca_3044 Nocardioides sp. JS614 histidinol-phosphate aminotransferase YP_924233.1 3240906 R 196162 CDS YP_924234.1 119717269 4600162 complement(3241998..3243296) 1 NC_008699.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 3243296 hisD 4600162 hisD Nocardioides sp. JS614 histidinol dehydrogenase YP_924234.1 3241998 R 196162 CDS YP_924235.1 119717270 4600163 3243408..3244073 1 NC_008699.1 PFAM: peptidase S16, lon domain protein; KEGG: sma:SAV6150 hypothetical protein; peptidase S16, lon domain-containing protein 3244073 4600163 Noca_3046 Nocardioides sp. JS614 peptidase S16, lon domain-containing protein YP_924235.1 3243408 D 196162 CDS YP_924236.1 119717271 4600164 3244073..3244564 1 NC_008699.1 TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: sma:SAV6149 transcriptional regulator; ybaK/ebsC protein 3244564 4600164 Noca_3047 Nocardioides sp. JS614 ybaK/ebsC protein YP_924236.1 3244073 D 196162 CDS YP_924237.1 119717272 4600165 complement(3244551..3246152) 1 NC_008699.1 KEGG: tfu:Tfu_0463 hypothetical protein; hypothetical protein 3246152 4600165 Noca_3048 Nocardioides sp. JS614 hypothetical protein YP_924237.1 3244551 R 196162 CDS YP_924238.1 119717273 4600166 complement(3246163..3246768) 1 NC_008699.1 hypothetical protein 3246768 4600166 Noca_3049 Nocardioides sp. JS614 hypothetical protein YP_924238.1 3246163 R 196162 CDS YP_924239.1 119717274 4600167 complement(3246765..3250316) 1 NC_008699.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 3250316 dnaE 4600167 dnaE Nocardioides sp. JS614 DNA polymerase III subunit alpha YP_924239.1 3246765 R 196162 CDS YP_924240.1 119717275 4600168 complement(3250463..3251176) 1 NC_008699.1 PFAM: GCN5-related N-acetyltransferase; Chorismate mutase; KEGG: sco:SCO1988 hypothetical protein; N-acetyltransferase GCN5 3251176 4600168 Noca_3051 Nocardioides sp. JS614 N-acetyltransferase GCN5 YP_924240.1 3250463 R 196162 CDS YP_924241.1 119717276 4600169 complement(3251166..3252104) 1 NC_008699.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: sco:SCO2073 putative ribosomal large subunit pseudouridine synthase; ribosomal large subunit pseudouridine synthase D 3252104 4600169 Noca_3052 Nocardioides sp. JS614 ribosomal large subunit pseudouridine synthase D YP_924241.1 3251166 R 196162 CDS YP_924242.1 119717277 4600170 complement(3252101..3252697) 1 NC_008699.1 PFAM: peptidase A8, signal peptidase II; KEGG: fal:FRAAL2208 lipoprotein signal peptidase (prolipoprotein signal peptidase) (signal peptidase II) (SPase II) (partial match); peptidase A8, signal peptidase II 3252697 4600170 Noca_3053 Nocardioides sp. JS614 peptidase A8, signal peptidase II YP_924242.1 3252101 R 196162 CDS YP_924243.1 119717278 4600171 complement(3252670..3253521) 1 NC_008699.1 PFAM: zinc finger, DksA/TraR C4-type; KEGG: rfr:Rfer_3349 histone protein; DksA/TraR C4-type zinc finger protein 3253521 4600171 Noca_3054 Nocardioides sp. JS614 DksA/TraR C4-type zinc finger protein YP_924243.1 3252670 R 196162 CDS YP_924244.1 119717279 4600172 complement(3253697..3254440) 1 NC_008699.1 PFAM: DivIVA family protein; KEGG: tfu:Tfu_1118 hypothetical protein; DivIVA family protein 3254440 4600172 Noca_3055 Nocardioides sp. JS614 DivIVA family protein YP_924244.1 3253697 R 196162 CDS YP_924245.1 119717280 4600173 complement(3254550..3254840) 1 NC_008699.1 KEGG: sma:SAV6128 hypothetical protein; hypothetical protein 3254840 4600173 Noca_3056 Nocardioides sp. JS614 hypothetical protein YP_924245.1 3254550 R 196162 CDS YP_924246.1 119717281 4600174 complement(3254850..3255347) 1 NC_008699.1 PFAM: protein of unknown function DUF552; KEGG: tfu:Tfu_1116 hypothetical protein; hypothetical protein 3255347 4600174 Noca_3057 Nocardioides sp. JS614 hypothetical protein YP_924246.1 3254850 R 196162 CDS YP_924247.1 119717282 4600175 complement(3255406..3256110) 1 NC_008699.1 PFAM: alanine racemase domain protein; KEGG: tfu:Tfu_1115 protein of unknown function UPF0001; alanine racemase domain-containing protein 3256110 4600175 Noca_3058 Nocardioides sp. JS614 alanine racemase domain-containing protein YP_924247.1 3255406 R 196162 CDS YP_924248.1 119717283 4600176 complement(3256107..3256802) 1 NC_008699.1 PFAM: protein of unknown function DUF152; KEGG: pac:PPA0762 conserved protein; hypothetical protein 3256802 4600176 Noca_3059 Nocardioides sp. JS614 hypothetical protein YP_924248.1 3256107 R 196162 CDS YP_924249.1 119717284 4600177 complement(3256799..3258004) 1 NC_008699.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 3258004 4600177 Noca_3060 Nocardioides sp. JS614 cell division protein FtsZ YP_924249.1 3256799 R 196162 CDS YP_924250.1 119717285 4600178 complement(3258343..3259089) 1 NC_008699.1 PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein, FtsQ-type; KEGG: pac:PPA0760 cell division protein FtsQ; cell division protein FtsQ 3259089 4600178 Noca_3061 Nocardioides sp. JS614 cell division protein FtsQ YP_924250.1 3258343 R 196162 CDS YP_924251.1 119717286 4600179 complement(3259082..3260422) 1 NC_008699.1 TIGRFAM: UDP-N-acetylmuramate--alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: tfu:Tfu_1111 UDP-N-acetylmuramate--alanine ligase; UDP-N-acetylmuramate--L-alanine ligase 3260422 4600179 Noca_3062 Nocardioides sp. JS614 UDP-N-acetylmuramate--L-alanine ligase YP_924251.1 3259082 R 196162 CDS YP_924252.1 119717287 4600180 complement(3260419..3261516) 1 NC_008699.1 KEGG: sco:SCO2084 putative UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; TIGRFAM: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: glycosyl transferase, family 28; Glycosyltransferase 28, C-terminal domain; UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-UDP N- acetylglucosamine transferase 3261516 4600180 Noca_3063 Nocardioides sp. JS614 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-UDP N- acetylglucosamine transferase YP_924252.1 3260419 R 196162 CDS YP_924253.1 119717288 4600181 complement(3261527..3262780) 1 NC_008699.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: sma:SAV6121 putative cell division protein FtsW; cell division protein FtsW 3262780 4600181 Noca_3064 Nocardioides sp. JS614 cell division protein FtsW YP_924253.1 3261527 R 196162 CDS YP_924254.1 119717289 4600182 complement(3262823..3264289) 1 NC_008699.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 3264289 murD 4600182 murD Nocardioides sp. JS614 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_924254.1 3262823 R 196162 CDS YP_924255.1 119717290 4600183 complement(3264289..3265383) 1 NC_008699.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 3265383 mraY 4600183 mraY Nocardioides sp. JS614 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_924255.1 3264289 R 196162 CDS YP_924256.1 119717291 4600184 complement(3265380..3266765) 1 NC_008699.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: sco:SCO2088 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 3266765 4600184 Noca_3067 Nocardioides sp. JS614 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase YP_924256.1 3265380 R 196162 CDS YP_924257.1 119717292 4600185 complement(3266753..3268267) 1 NC_008699.1 TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetases; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: sma:SAV6117 putative UDP-N-acetylmuramoylalanyl-D-glutamate- 2,6-diaminopimelate ligase; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 3268267 4600185 Noca_3068 Nocardioides sp. JS614 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_924257.1 3266753 R 196162 CDS YP_924258.1 119717293 4600186 complement(3268290..3270050) 1 NC_008699.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: sco:SCO2090 cell division protein; peptidoglycan glycosyltransferase 3270050 4600186 Noca_3069 Nocardioides sp. JS614 peptidoglycan glycosyltransferase YP_924258.1 3268290 R 196162 CDS YP_924259.1 119717294 4600187 complement(3270093..3270722) 1 NC_008699.1 KEGG: sma:SAV6115 hypothetical protein; hypothetical protein 3270722 4600187 Noca_3070 Nocardioides sp. JS614 hypothetical protein YP_924259.1 3270093 R 196162 CDS YP_924260.1 119717295 4600188 complement(3270719..3271678) 1 NC_008699.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: sma:SAV6114 S-adenosyl-methyltransferase; S-adenosyl-methyltransferase MraW 3271678 4600188 Noca_3071 Nocardioides sp. JS614 S-adenosyl-methyltransferase MraW YP_924260.1 3270719 R 196162 CDS YP_924261.1 119717296 4600189 complement(3272105..3272539) 1 NC_008699.1 TIGRFAM: MraZ protein; PFAM: protein of unknown function UPF0040; KEGG: pac:PPA0749 MraZ protein; MraZ protein 3272539 4600189 Noca_3072 Nocardioides sp. JS614 MraZ protein YP_924261.1 3272105 R 196162 CDS YP_924262.1 119717297 4600190 3272997..3273971 1 NC_008699.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: sma:SAV6112 putative regulatory protein; ATPase 3273971 4600190 Noca_3073 Nocardioides sp. JS614 ATPase YP_924262.1 3272997 D 196162 CDS YP_924263.1 119717298 4600191 3274022..3275296 1 NC_008699.1 PFAM: protein of unknown function DUF58; KEGG: sco:SCO2095 hypothetical protein; hypothetical protein 3275296 4600191 Noca_3074 Nocardioides sp. JS614 hypothetical protein YP_924263.1 3274022 D 196162 CDS YP_924264.1 119717299 4600192 3275296..3277692 1 NC_008699.1 PFAM: transglutaminase domain protein; KEGG: sma:SAV6110 hypothetical protein; transglutaminase domain-containing protein 3277692 4600192 Noca_3075 Nocardioides sp. JS614 transglutaminase domain-containing protein YP_924264.1 3275296 D 196162 CDS YP_924265.1 119717300 4600193 complement(3277714..3278175) 1 NC_008699.1 KEGG: sco:SCO2097 hypothetical protein; hypothetical protein 3278175 4600193 Noca_3076 Nocardioides sp. JS614 hypothetical protein YP_924265.1 3277714 R 196162 CDS YP_924266.1 119717301 4600194 complement(3278322..3279080) 1 NC_008699.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sma:SAV6108 methyltransferase; type 11 methyltransferase 3279080 4600194 Noca_3077 Nocardioides sp. JS614 type 11 methyltransferase YP_924266.1 3278322 R 196162 CDS YP_924267.1 119717302 4600195 complement(3279114..3279545) 1 NC_008699.1 KEGG: fra:Francci3_1400 hypothetical protein; hypothetical protein 3279545 4600195 Noca_3078 Nocardioides sp. JS614 hypothetical protein YP_924267.1 3279114 R 196162 CDS YP_924268.1 119717303 4600196 complement(3279749..3280198) 1 NC_008699.1 hypothetical protein 3280198 4600196 Noca_3079 Nocardioides sp. JS614 hypothetical protein YP_924268.1 3279749 R 196162 CDS YP_924269.1 119717304 4600197 3280256..3280729 1 NC_008699.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: nfa:nfa28580 hypothetical protein; YbaK/prolyl-tRNA synthetase associated domain-containing protein 3280729 4600197 Noca_3080 Nocardioides sp. JS614 YbaK/prolyl-tRNA synthetase associated domain-containing protein YP_924269.1 3280256 D 196162 CDS YP_924270.1 119717305 4597866 3280729..3281085 1 NC_008699.1 PFAM: arsenate reductase and related; KEGG: mxa:MXAN_3126 putative arsenate reductase; arsenate reductase-like protein 3281085 4597866 Noca_3081 Nocardioides sp. JS614 arsenate reductase-like protein YP_924270.1 3280729 D 196162 CDS YP_924271.1 119717306 4597867 3281116..3282414 1 NC_008699.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: sma:SAV6102 phytoene dehydrogenase; UDP-galactopyranose mutase 3282414 4597867 Noca_3082 Nocardioides sp. JS614 UDP-galactopyranose mutase YP_924271.1 3281116 D 196162 CDS YP_924272.1 119717307 4597868 complement(3282434..3283324) 1 NC_008699.1 TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; KEGG: fal:FRAAL2163 5,10-methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 3283324 4597868 Noca_3083 Nocardioides sp. JS614 5,10-methylenetetrahydrofolate reductase YP_924272.1 3282434 R 196162 CDS YP_924273.1 119717308 4597869 3283389..3284465 1 NC_008699.1 PFAM: Polyprenyl synthetase; KEGG: tfu:Tfu_1051 putative polyprenyl synthase / dimethylallyltranstransferase; polyprenyl synthetase 3284465 4597869 Noca_3084 Nocardioides sp. JS614 polyprenyl synthetase YP_924273.1 3283389 D 196162 CDS YP_924274.1 119717309 4597870 complement(3284507..3284929) 1 NC_008699.1 KEGG: tfu:Tfu_1045 hypothetical protein; hypothetical protein 3284929 4597870 Noca_3085 Nocardioides sp. JS614 hypothetical protein YP_924274.1 3284507 R 196162 CDS YP_924275.1 119717310 4597871 3285001..3286977 1 NC_008699.1 PFAM: protein kinase; PASTA domain containing protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: sco:SCO2110 putative eukaryotic-type serine/threonine protein kinase; protein kinase 3286977 4597871 Noca_3086 Nocardioides sp. JS614 protein kinase YP_924275.1 3285001 D 196162 CDS YP_924276.1 119717311 4597872 3287192..3288577 1 NC_008699.1 KEGG: fra:Francci3_0800 HNH nuclease; hypothetical protein 3288577 4597872 Noca_3087 Nocardioides sp. JS614 hypothetical protein YP_924276.1 3287192 D 196162 CDS YP_924277.1 119717312 4597873 3288902..3289363 1 NC_008699.1 KEGG: sco:SCO3763 hypothetical protein; hypothetical protein 3289363 4597873 Noca_3088 Nocardioides sp. JS614 hypothetical protein YP_924277.1 3288902 D 196162 CDS YP_924278.1 119717313 4597874 3289614..3291734 1 NC_008699.1 KEGG: rba:RB9350 hypothetical protein; hypothetical protein 3291734 4597874 Noca_3089 Nocardioides sp. JS614 hypothetical protein YP_924278.1 3289614 D 196162 CDS YP_924279.1 119717314 4597875 3292202..3293086 1 NC_008699.1 KEGG: sma:SAV6091 putative endonuclease IV; TIGRFAM: apurinic endonuclease Apn1; PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease, family 2; endonuclease IV 3293086 4597875 Noca_3090 Nocardioides sp. JS614 endonuclease IV YP_924279.1 3292202 D 196162 CDS YP_924280.1 119717315 4597876 3293083..3293967 1 NC_008699.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: pac:PPA0728 membrane spanning protein DUF6; hypothetical protein 3293967 4597876 Noca_3091 Nocardioides sp. JS614 hypothetical protein YP_924280.1 3293083 D 196162 CDS YP_924281.1 119717316 4597877 3294173..3295285 1 NC_008699.1 TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; KEGG: tfu:Tfu_1039 phospho-2-dehydro-3-deoxyheptonate aldolase, subtype 2; 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase 3295285 4597877 Noca_3092 Nocardioides sp. JS614 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase YP_924281.1 3294173 D 196162 CDS YP_924282.1 119717317 4597878 3295366..3296232 1 NC_008699.1 KEGG: pac:PPA0345 hypothetical protein; hypothetical protein 3296232 4597878 Noca_3093 Nocardioides sp. JS614 hypothetical protein YP_924282.1 3295366 D 196162 CDS YP_924283.1 119717318 4597879 complement(3296240..3297235) 1 NC_008699.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase, class I and II; KEGG: sth:STH2403 threonine aldolase; L-threonine aldolase 3297235 4597879 Noca_3094 Nocardioides sp. JS614 L-threonine aldolase YP_924283.1 3296240 R 196162 CDS YP_924284.1 119717319 4597880 complement(3297232..3297810) 1 NC_008699.1 PFAM: blue (type 1) copper domain protein; KEGG: aba:Acid345_1788 plastocyanin-like protein; blue (type1) copper domain-containing protein 3297810 4597880 Noca_3095 Nocardioides sp. JS614 blue (type1) copper domain-containing protein YP_924284.1 3297232 R 196162 CDS YP_924285.1 119717320 4597881 complement(3297862..3299199) 1 NC_008699.1 KEGG: sma:SAV6086 putative 2-dehydro-3-deoxyphosphoheptonate aldolase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase, class II; 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase 3299199 4597881 Noca_3096 Nocardioides sp. JS614 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase YP_924285.1 3297862 R 196162 CDS YP_924286.1 119717321 4597882 complement(3299279..3300787) 1 NC_008699.1 PFAM: amino acid permease-associated region; KEGG: mmc:Mmcs_4568 amino acid permease-associated region; amino acid permease-associated protein 3300787 4597882 Noca_3097 Nocardioides sp. JS614 amino acid permease-associated protein YP_924286.1 3299279 R 196162 CDS YP_924287.1 119717322 4597883 complement(3300835..3302061) 1 NC_008699.1 catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate; pyrophosphate--fructose-6-phosphate 1-phosphotransferase 3302061 4597883 Noca_3098 Nocardioides sp. JS614 pyrophosphate--fructose-6-phosphate 1-phosphotransferase YP_924287.1 3300835 R 196162 CDS YP_924288.1 119717323 4597884 complement(3302305..3303606) 1 NC_008699.1 PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO2690 membrane transport protein; major facilitator transporter 3303606 4597884 Noca_3099 Nocardioides sp. JS614 major facilitator transporter YP_924288.1 3302305 R 196162 CDS YP_924289.1 119717324 4597885 3303631..3304473 1 NC_008699.1 PFAM: protein of unknown function DUF1028; KEGG: rxy:Rxyl_0871 protein of unknown function DUF1028; hypothetical protein 3304473 4597885 Noca_3100 Nocardioides sp. JS614 hypothetical protein YP_924289.1 3303631 D 196162 CDS YP_924290.1 119717325 4597886 3304470..3305951 1 NC_008699.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase, FGGY; KEGG: rxy:Rxyl_1063 glycerol kinase; glycerol kinase 3305951 4597886 Noca_3101 Nocardioides sp. JS614 glycerol kinase YP_924290.1 3304470 D 196162 CDS YP_924291.1 119717326 4597887 complement(3306028..3306912) 1 NC_008699.1 KEGG: nfa:nfa6330 hypothetical protein; hypothetical protein 3306912 4597887 Noca_3102 Nocardioides sp. JS614 hypothetical protein YP_924291.1 3306028 R 196162 CDS YP_924292.1 119717327 4597888 complement(3306922..3307425) 1 NC_008699.1 PFAM: flavin reductase domain protein, FMN-binding; KEGG: rpb:RPB_1003 flavin reductase-like, FMN-binding; flavin reductase domain-containing protein 3307425 4597888 Noca_3103 Nocardioides sp. JS614 flavin reductase domain-containing protein YP_924292.1 3306922 R 196162 CDS YP_924293.1 119717328 4597889 complement(3307422..3308165) 1 NC_008699.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: fra:Francci3_3088 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 3308165 4597889 Noca_3104 Nocardioides sp. JS614 phospholipid/glycerol acyltransferase YP_924293.1 3307422 R 196162 CDS YP_924294.1 119717329 4597890 3308278..3309051 1 NC_008699.1 PFAM: alpha/beta hydrolase fold; KEGG: sco:SCO2123 putative esterase/lipase; alpha/beta hydrolase fold protein 3309051 4597890 Noca_3105 Nocardioides sp. JS614 alpha/beta hydrolase fold protein YP_924294.1 3308278 D 196162 CDS YP_924295.1 119717330 4597891 3309067..3309531 1 NC_008699.1 KEGG: sco:SCO2124 hypothetical protein; hypothetical protein 3309531 4597891 Noca_3106 Nocardioides sp. JS614 hypothetical protein YP_924295.1 3309067 D 196162 CDS YP_924296.1 119717331 4597892 3309587..3310894 1 NC_008699.1 PFAM: LOR/SDH bifunctional enzyme conserved domain protein; KEGG: fal:FRAAL5090 hypothetical protein; LOR/SDH bifunctional protein 3310894 4597892 Noca_3107 Nocardioides sp. JS614 LOR/SDH bifunctional protein YP_924296.1 3309587 D 196162 CDS YP_924297.1 119717332 4597893 complement(3310827..3311834) 1 NC_008699.1 PFAM: ROK family protein; KEGG: tfu:Tfu_0273 glucokinase ROK; glucokinase 3311834 4597893 Noca_3108 Nocardioides sp. JS614 glucokinase YP_924297.1 3310827 R 196162 CDS YP_924298.1 119717333 4597894 complement(3311849..3312790) 1 NC_008699.1 TIGRFAM: putative glucokinase, ROK family; PFAM: ROK family protein; KEGG: fal:FRAAL5091 putative glucokinase (glucose kinase); glucokinase 3312790 4597894 Noca_3109 Nocardioides sp. JS614 glucokinase YP_924298.1 3311849 R 196162 CDS YP_924299.1 119717334 4597895 complement(3312787..3313251) 1 NC_008699.1 hypothetical protein 3313251 4597895 Noca_3110 Nocardioides sp. JS614 hypothetical protein YP_924299.1 3312787 R 196162 CDS YP_924300.1 119717335 4597896 complement(3313253..3314485) 1 NC_008699.1 PFAM: Anion-transporting ATPase; KEGG: rxy:Rxyl_1314 arsenite-activated ATPase (ArsA); arsenite-transporting ATPase 3314485 4597896 Noca_3111 Nocardioides sp. JS614 arsenite-transporting ATPase YP_924300.1 3313253 R 196162 CDS YP_924301.1 119717336 4597897 complement(3314508..3314948) 1 NC_008699.1 PFAM: cyclase/dehydrase; KEGG: sco:SCO2129 hypothetical protein; cyclase/dehydrase 3314948 4597897 Noca_3112 Nocardioides sp. JS614 cyclase/dehydrase YP_924301.1 3314508 R 196162 CDS YP_924302.1 119717337 4597898 3315098..3316900 1 NC_008699.1 PFAM: AMP-dependent synthetase and ligase; KEGG: sma:SAV6069 putative acyl-CoA synthetase, long-chain-fatty-acid:CoA ligase; AMP-dependent synthetase and ligase 3316900 4597898 Noca_3113 Nocardioides sp. JS614 AMP-dependent synthetase and ligase YP_924302.1 3315098 D 196162 CDS YP_924303.1 119717338 4597899 3317102..3317836 1 NC_008699.1 PFAM: SAF domain; KEGG: sus:Acid_4161 SAF domain; SAF domain-containing protein 3317836 4597899 Noca_3114 Nocardioides sp. JS614 SAF domain-containing protein YP_924303.1 3317102 D 196162 CDS YP_924304.1 119717339 4597900 3317843..3319030 1 NC_008699.1 KEGG: ade:Adeh_2826 Flp pilus assembly protein ATPase CpaE-like; Flp pilus assembly protein ATPase CpaE-like 3319030 4597900 Noca_3115 Nocardioides sp. JS614 Flp pilus assembly protein ATPase CpaE-like YP_924304.1 3317843 D 196162 CDS YP_924305.1 119717340 4595546 3319035..3320510 1 NC_008699.1 PFAM: type II secretion system protein E; KEGG: dde:Dde_2363 type II/IV secretion system protein; type II secretion system protein E 3320510 4595546 Noca_3116 Nocardioides sp. JS614 type II secretion system protein E YP_924305.1 3319035 D 196162 CDS YP_924306.1 119717341 4595547 3320530..3321510 1 NC_008699.1 PFAM: type II secretion system protein; KEGG: cte:CT0435 TadB protein; type II secretion system protein 3321510 4595547 Noca_3117 Nocardioides sp. JS614 type II secretion system protein YP_924306.1 3320530 D 196162 CDS YP_924307.1 119717342 4595548 3321512..3322426 1 NC_008699.1 PFAM: type II secretion system protein; KEGG: mxa:MXAN_4650 type II secretion system protein F domain protein; type II secretion system protein 3322426 4595548 Noca_3118 Nocardioides sp. JS614 type II secretion system protein YP_924307.1 3321512 D 196162 CDS YP_924308.1 119717343 4595549 3322426..3324033 1 NC_008699.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: rxy:Rxyl_2612 GAF sensor signal transduction histidine kinase; ATPase domain-containing protein 3324033 4595549 Noca_3119 Nocardioides sp. JS614 ATPase domain-containing protein YP_924308.1 3322426 D 196162 CDS YP_924309.1 119717344 4595550 3324030..3324668 1 NC_008699.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: rha:RHA1_ro00150 response regulator, two-component system; response regulator receiver 3324668 4595550 Noca_3120 Nocardioides sp. JS614 response regulator receiver YP_924309.1 3324030 D 196162 CDS YP_924310.1 119717345 4595551 3324875..3325078 1 NC_008699.1 PFAM: Flp/Fap pilin component; Flp/Fap pilin component 3325078 4595551 Noca_3121 Nocardioides sp. JS614 Flp/Fap pilin component YP_924310.1 3324875 D 196162 CDS YP_924311.1 119717346 4595552 complement(3325140..3326375) 1 NC_008699.1 PFAM: peptidase M48, Ste24p; KEGG: mta:Moth_1231 STE24 endopeptidase; peptidase M48, Ste24p 3326375 4595552 Noca_3122 Nocardioides sp. JS614 peptidase M48, Ste24p YP_924311.1 3325140 R 196162 CDS YP_924312.1 119717347 4595553 complement(3326372..3327646) 1 NC_008699.1 KEGG: sma:SAV6064 hypothetical protein; hypothetical protein 3327646 4595553 Noca_3123 Nocardioides sp. JS614 hypothetical protein YP_924312.1 3326372 R 196162 CDS YP_924313.1 119717348 4595554 complement(3327660..3328643) 1 NC_008699.1 PFAM: NLP/P60 protein; KEGG: sco:SCO4793 NPL/P60 family secreted protein; NLP/P60 protein 3328643 4595554 Noca_3124 Nocardioides sp. JS614 NLP/P60 protein YP_924313.1 3327660 R 196162 CDS YP_924314.1 119717349 4595555 complement(3329004..3329237) 1 NC_008699.1 KEGG: mmc:Mmcs_3288 hypothetical protein; hypothetical protein 3329237 4595555 Noca_3125 Nocardioides sp. JS614 hypothetical protein YP_924314.1 3329004 R 196162 CDS YP_924315.1 119717350 4595556 complement(3329291..3330568) 1 NC_008699.1 KEGG: sma:SAV6061 hypothetical protein; hypothetical protein 3330568 4595556 Noca_3126 Nocardioides sp. JS614 hypothetical protein YP_924315.1 3329291 R 196162 CDS YP_924316.1 119717351 4595557 complement(3330579..3330845) 1 NC_008699.1 KEGG: sma:SAV6060 hypothetical protein; hypothetical protein 3330845 4595557 Noca_3127 Nocardioides sp. JS614 hypothetical protein YP_924316.1 3330579 R 196162 CDS YP_924317.1 119717352 4595558 3330957..3332762 1 NC_008699.1 contains 3'-5'exonuclease domain; hypothetical protein 3332762 4595558 Noca_3128 Nocardioides sp. JS614 hypothetical protein YP_924317.1 3330957 D 196162 CDS YP_924318.1 119717353 4595559 3332782..3333060 1 NC_008699.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: tfu:Tfu_1025 putative transcriptional regulator; AsnC family transcriptional regulator 3333060 4595559 Noca_3129 Nocardioides sp. JS614 AsnC family transcriptional regulator YP_924318.1 3332782 D 196162 CDS YP_924319.1 119717354 4595560 3333069..3333695 1 NC_008699.1 KEGG: ppr:PBPRA0653 hypothetical protein; hypothetical protein 3333695 4595560 Noca_3130 Nocardioides sp. JS614 hypothetical protein YP_924319.1 3333069 D 196162 CDS YP_924320.1 119717355 4595561 complement(3333722..3334747) 1 NC_008699.1 KEGG: sma:SAV6056 putative anthranilate phosphoribosyltransferase; TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase, family 3; anthranilate phosphoribosyltransferase 3334747 4595561 Noca_3131 Nocardioides sp. JS614 anthranilate phosphoribosyltransferase YP_924320.1 3333722 R 196162 CDS YP_924321.1 119717356 4595562 complement(3334744..3335163) 1 NC_008699.1 KEGG: rha:RHA1_ro05908 hypothetical protein; hypothetical protein 3335163 4595562 Noca_3132 Nocardioides sp. JS614 hypothetical protein YP_924321.1 3334744 R 196162 CDS YP_924322.1 119717357 4595563 complement(3335177..3336163) 1 NC_008699.1 KEGG: fal:FRAAL4308 hypothetical protein; hypothetical protein 3336163 4595563 Noca_3133 Nocardioides sp. JS614 hypothetical protein YP_924322.1 3335177 R 196162 CDS YP_924323.1 119717358 4595564 3336203..3336850 1 NC_008699.1 PFAM: cytochrome c oxidase, subunit III; KEGG: sco:SCO2151 cytochrome c oxidase subunit III; cytochrome c oxidase subunit III 3336850 4595564 Noca_3134 Nocardioides sp. JS614 cytochrome c oxidase subunit III YP_924323.1 3336203 D 196162 CDS YP_924324.1 119717359 4595565 3336889..3337758 1 NC_008699.1 PFAM: cytochrome c, class I; KEGG: sco:SCO2150 cytochrome C heme-binding subunit; cytochrome c, class I 3337758 4595565 Noca_3135 Nocardioides sp. JS614 cytochrome c, class I YP_924324.1 3336889 D 196162 CDS YP_924325.1 119717360 4595566 3337755..3338861 1 NC_008699.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: pac:PPA0711 ubiquinol-cytochrome c reductase iron-sulfur subunit; Rieske (2Fe-2S) domain-containing protein 3338861 4595566 Noca_3136 Nocardioides sp. JS614 Rieske (2Fe-2S) domain-containing protein YP_924325.1 3337755 D 196162 CDS YP_924326.1 119717361 4595567 3338864..3340612 1 NC_008699.1 PFAM: Cytochrome b/b6, N-terminal domain; KEGG: pac:PPA0710 cytochrome b subunit; cytochrome b/b6 domain-containing protein 3340612 4595567 Noca_3137 Nocardioides sp. JS614 cytochrome b/b6 domain-containing protein YP_924326.1 3338864 D 196162 CDS YP_924327.1 119717362 4595568 complement(3340739..3341947) 1 NC_008699.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: mmc:Mmcs_1448 ErfK/YbiS/YcfS/YnhG; ErfK/YbiS/YcfS/YnhG family protein 3341947 4595568 Noca_3138 Nocardioides sp. JS614 ErfK/YbiS/YcfS/YnhG family protein YP_924327.1 3340739 R 196162 CDS YP_924328.1 119717363 4595569 complement(3342034..3342432) 1 NC_008699.1 KEGG: pac:PPA0703 hypothetical protein; hypothetical protein 3342432 4595569 Noca_3139 Nocardioides sp. JS614 hypothetical protein YP_924328.1 3342034 R 196162 CDS YP_924329.1 119717364 4595570 complement(3342432..3344180) 1 NC_008699.1 PFAM: cytochrome c oxidase, subunit I; KEGG: sco:SCO2155 putative cytochrome c oxidase subunit I; cytochrome-c oxidase 3344180 4595570 Noca_3140 Nocardioides sp. JS614 cytochrome-c oxidase YP_924329.1 3342432 R 196162 CDS YP_924330.1 119717365 4595571 complement(3344177..3345151) 1 NC_008699.1 PFAM: cytochrome c oxidase, subunit II; cytochrome C oxidase subunit II, transmembrane region; KEGG: pac:PPA0701 cytochrome c oxidase subunit II; cytochrome c oxidase subunit II 3345151 4595571 Noca_3141 Nocardioides sp. JS614 cytochrome c oxidase subunit II YP_924330.1 3344177 R 196162 CDS YP_924331.1 119717366 4600127 3345262..3346401 1 NC_008699.1 PFAM: aminotransferase, class V; KEGG: sco:SCO2157 aminotransferase; cysteine desulfurase 3346401 4600127 Noca_3142 Nocardioides sp. JS614 cysteine desulfurase YP_924331.1 3345262 D 196162 CDS YP_924332.1 119717367 4600128 3346398..3346646 1 NC_008699.1 PFAM: SirA family protein; KEGG: sma:SAV6046 aminotransferase; SirA family protein 3346646 4600128 Noca_3143 Nocardioides sp. JS614 SirA family protein YP_924332.1 3346398 D 196162 CDS YP_924333.1 119717368 4600129 complement(3346630..3347613) 1 NC_008699.1 PFAM: PfkB domain protein; KEGG: sco:SCO2158 kinase; ribokinase-like domain-containing protein 3347613 4600129 Noca_3144 Nocardioides sp. JS614 ribokinase-like domain-containing protein YP_924333.1 3346630 R 196162 CDS YP_924334.1 119717369 4600130 3347677..3347925 1 NC_008699.1 hypothetical protein 3347925 4600130 Noca_3145 Nocardioides sp. JS614 hypothetical protein YP_924334.1 3347677 D 196162 CDS YP_924335.1 119717370 4600131 complement(3347998..3348360) 1 NC_008699.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: sma:SAV6042 hypothetical protein; iron-sulfur cluster assembly accessory protein 3348360 4600131 Noca_3146 Nocardioides sp. JS614 iron-sulfur cluster assembly accessory protein YP_924335.1 3347998 R 196162 CDS YP_924336.1 119717371 4600132 complement(3348452..3349525) 1 NC_008699.1 PFAM: glycerate kinase; KEGG: tfu:Tfu_1010 glycerate kinase; glycerate kinase 3349525 4600132 Noca_3147 Nocardioides sp. JS614 glycerate kinase YP_924336.1 3348452 R 196162 CDS YP_924337.1 119717372 4600133 3349575..3350456 1 NC_008699.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rxy:Rxyl_1997 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3350456 4600133 Noca_3148 Nocardioides sp. JS614 N-acetyltransferase GCN5 YP_924337.1 3349575 D 196162 CDS YP_924338.1 119717373 4600134 3350487..3351671 1 NC_008699.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 3351671 4600134 Noca_3149 Nocardioides sp. JS614 quinolinate synthetase YP_924338.1 3350487 D 196162 CDS YP_924339.1 119717374 4600135 complement(3351883..3352461) 1 NC_008699.1 KEGG: sco:SCO2203 hypothetical protein; hypothetical protein 3352461 4600135 Noca_3150 Nocardioides sp. JS614 hypothetical protein YP_924339.1 3351883 R 196162 CDS YP_924340.1 119717375 4600136 complement(3352466..3353395) 1 NC_008699.1 putative metalloprotease; heat shock protein HtpX 3353395 4600136 Noca_3151 Nocardioides sp. JS614 heat shock protein HtpX YP_924340.1 3352466 R 196162 CDS YP_924341.1 119717376 4600137 complement(3353451..3354233) 1 NC_008699.1 PFAM: PspA/IM30 family protein; KEGG: sco:SCO2168 putative phage shock protein A; PspA/IM30 family protein 3354233 4600137 Noca_3152 Nocardioides sp. JS614 PspA/IM30 family protein YP_924341.1 3353451 R 196162 CDS YP_924342.1 119717377 4600138 3354385..3354969 1 NC_008699.1 KEGG: sco:SCO2169 integral membrane protein; integral membrane protein 3354969 4600138 Noca_3153 Nocardioides sp. JS614 integral membrane protein YP_924342.1 3354385 D 196162 CDS YP_924343.1 119717378 4600139 complement(3355064..3356071) 1 NC_008699.1 PFAM: aldo/keto reductase; KEGG: mxa:MXAN_6482 oxidoreductase, aldo/keto reductase family; aldo/keto reductase 3356071 4600139 Noca_3154 Nocardioides sp. JS614 aldo/keto reductase YP_924343.1 3355064 R 196162 CDS YP_924344.1 119717379 4600140 complement(3356096..3357157) 1 NC_008699.1 TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: sco:SCO7475 putative phenylacetic acid degradation NADH oxidoreductase PaaE; phenylacetate-CoA oxygenase/reductase subunit PaaK 3357157 4600140 Noca_3155 Nocardioides sp. JS614 phenylacetate-CoA oxygenase/reductase subunit PaaK YP_924344.1 3356096 R 196162 CDS YP_924345.1 119717380 4600141 complement(3357172..3357657) 1 NC_008699.1 TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59; KEGG: sco:SCO7474 putative phenylacetic acid degradation protein PaaD; phenylacetate-CoA oxygenase subunit PaaJ 3357657 4600141 Noca_3156 Nocardioides sp. JS614 phenylacetate-CoA oxygenase subunit PaaJ YP_924345.1 3357172 R 196162 CDS YP_924346.1 119717381 4600142 complement(3357654..3358397) 1 NC_008699.1 TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: rpc:RPC_0689 phenylacetate-CoA oxygenase, PaaI subunit; phenylacetate-CoA oxygenase subunit PaaI 3358397 4600142 Noca_3157 Nocardioides sp. JS614 phenylacetate-CoA oxygenase subunit PaaI YP_924346.1 3357654 R 196162 CDS YP_924347.1 119717382 4600143 complement(3358394..3358675) 1 NC_008699.1 with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation; phenylacetate-CoA oxygenase subunit PaaB 3358675 paaB 4600143 paaB Nocardioides sp. JS614 phenylacetate-CoA oxygenase subunit PaaB YP_924347.1 3358394 R 196162 CDS YP_924348.1 119717383 4600144 complement(3358672..3359592) 1 NC_008699.1 with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; phenylacetate-CoA oxygenase subunit PaaA 3359592 paaA 4600144 paaA Nocardioides sp. JS614 phenylacetate-CoA oxygenase subunit PaaA YP_924348.1 3358672 R 196162 CDS YP_924349.1 119717384 4600145 3359679..3360236 1 NC_008699.1 PFAM: GCN5-related N-acetyltransferase; KEGG: tfu:Tfu_0789 hypothetical protein; N-acetyltransferase GCN5 3360236 4600145 Noca_3160 Nocardioides sp. JS614 N-acetyltransferase GCN5 YP_924349.1 3359679 D 196162 CDS YP_924350.1 119717385 4600146 3360304..3360522 1 NC_008699.1 hypothetical protein 3360522 4600146 Noca_3161 Nocardioides sp. JS614 hypothetical protein YP_924350.1 3360304 D 196162 CDS YP_924351.1 119717386 4600147 3360547..3361257 1 NC_008699.1 PFAM: AzlC family protein; KEGG: tfu:Tfu_1138 hypothetical protein; AzlC family protein 3361257 4600147 Noca_3162 Nocardioides sp. JS614 AzlC family protein YP_924351.1 3360547 D 196162 CDS YP_924352.1 119717387 4600148 3361254..3361556 1 NC_008699.1 PFAM: branched-chain amino acid transport; KEGG: sco:SCO5764 hypothetical protein; branched-chain amino acid transport 3361556 4600148 Noca_3163 Nocardioides sp. JS614 branched-chain amino acid transport YP_924352.1 3361254 D 196162 CDS YP_924353.1 119717388 4600149 complement(3361581..3363587) 1 NC_008699.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; phosphotransferase system, EIIC; phosphotransferase system, lactose/cellobiose-specific IIB subunit; KEGG: ppr:PBPRB0363 putative mannitol-specific IIABC component, PTS system; phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 3363587 4600149 Noca_3164 Nocardioides sp. JS614 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YP_924353.1 3361581 R 196162 CDS YP_924354.1 119717389 4600150 3363808..3364866 1 NC_008699.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pac:PPA0918 putative zinc-binding sorbitol dehydrogenase; alcohol dehydrogenase 3364866 4600150 Noca_3165 Nocardioides sp. JS614 alcohol dehydrogenase YP_924354.1 3363808 D 196162 CDS YP_924355.1 119717390 4600151 complement(3365367..3366950) 1 NC_008699.1 PFAM: peptidase M4, thermolysin; Propeptide, peptidase M4 and M36; Peptidase M4, thermolysin; KEGG: sma:SAV5669 neutral zinc metalloprotease; griselysin 3366950 4600151 Noca_3166 Nocardioides sp. JS614 griselysin YP_924355.1 3365367 R 196162 CDS YP_924356.1 119717391 4600152 complement(3367087..3367830) 1 NC_008699.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 3367830 4600152 Noca_3167 Nocardioides sp. JS614 dihydrodipicolinate reductase YP_924356.1 3367087 R 196162 CDS YP_924357.1 119717392 4600153 3367909..3368424 1 NC_008699.1 KEGG: nfa:nfa6240 hypothetical protein; hypothetical protein 3368424 4600153 Noca_3168 Nocardioides sp. JS614 hypothetical protein YP_924357.1 3367909 D 196162 CDS YP_924358.1 119717393 4600154 3368494..3369090 1 NC_008699.1 KEGG: rha:RHA1_ro07230 hypothetical protein; hypothetical protein 3369090 4600154 Noca_3169 Nocardioides sp. JS614 hypothetical protein YP_924358.1 3368494 D 196162 CDS YP_924359.1 119717394 4600155 3369087..3369638 1 NC_008699.1 KEGG: rha:RHA1_ro07229 hypothetical protein; hypothetical protein 3369638 4600155 Noca_3170 Nocardioides sp. JS614 hypothetical protein YP_924359.1 3369087 D 196162 CDS YP_924360.1 119717395 4600156 3369700..3370305 1 NC_008699.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: sma:SAV1635 hypothetical protein; carboxymuconolactone decarboxylase 3370305 4600156 Noca_3171 Nocardioides sp. JS614 carboxymuconolactone decarboxylase YP_924360.1 3369700 D 196162 CDS YP_924361.1 119717396 4600157 3370302..3371180 1 NC_008699.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: nfa:nfa22150 putative sigma factor; sigma-70 region 2 domain-containing protein 3371180 4600157 Noca_3172 Nocardioides sp. JS614 sigma-70 region 2 domain-containing protein YP_924361.1 3370302 D 196162 CDS YP_924362.1 119717397 4599036 complement(3371225..3371923) 1 NC_008699.1 hypothetical protein 3371923 4599036 Noca_3173 Nocardioides sp. JS614 hypothetical protein YP_924362.1 3371225 R 196162 CDS YP_924363.1 119717398 4599037 complement(3371935..3372738) 1 NC_008699.1 hypothetical protein 3372738 4599037 Noca_3174 Nocardioides sp. JS614 hypothetical protein YP_924363.1 3371935 R 196162 CDS YP_924364.1 119717399 4599038 complement(3372748..3373494) 1 NC_008699.1 hypothetical protein 3373494 4599038 Noca_3175 Nocardioides sp. JS614 hypothetical protein YP_924364.1 3372748 R 196162 CDS YP_924365.1 119717400 4599039 complement(3373706..3375067) 1 NC_008699.1 PFAM: peptidase M16 domain protein; KEGG: fal:FRAAL5752 putative zinc protease; peptidase M16 domain-containing protein 3375067 4599039 Noca_3176 Nocardioides sp. JS614 peptidase M16 domain-containing protein YP_924365.1 3373706 R 196162 CDS YP_924366.1 119717401 4599040 complement(3375064..3377292) 1 NC_008699.1 KEGG: sma:SAV2523 putative guanosine pentaphosphate synthetase/polyribonucleotide nucleotidyltransferase alpha chain; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein; polynucleotide phosphorylase/polyadenylase 3377292 4599040 Noca_3177 Nocardioides sp. JS614 polynucleotide phosphorylase/polyadenylase YP_924366.1 3375064 R 196162 CDS YP_924367.1 119717402 4599041 complement(3377570..3377845) 1 NC_008699.1 PFAM: ribosomal protein S15; KEGG: tfu:Tfu_0783 ribosomal protein S15, bacterial chloroplast and mitochondrial type; 30S ribosomal protein S15 3377845 4599041 Noca_3178 Nocardioides sp. JS614 30S ribosomal protein S15 YP_924367.1 3377570 R 196162 CDS YP_924368.1 119717403 4599042 3378111..3378773 1 NC_008699.1 KEGG: xcb:XC_3880 hypothetical protein; hypothetical protein 3378773 4599042 Noca_3179 Nocardioides sp. JS614 hypothetical protein YP_924368.1 3378111 D 196162 CDS YP_924369.1 119717404 4599043 complement(3378783..3379028) 1 NC_008699.1 hypothetical protein 3379028 4599043 Noca_3180 Nocardioides sp. JS614 hypothetical protein YP_924369.1 3378783 R 196162 CDS YP_924370.1 119717405 4599044 complement(3379234..3380976) 1 NC_008699.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: mmc:Mmcs_0083 phosphoenolpyruvate-protein phosphotransferase; phosphoenolpyruvate--protein phosphotransferase 3380976 4599044 Noca_3181 Nocardioides sp. JS614 phosphoenolpyruvate--protein phosphotransferase YP_924370.1 3379234 R 196162 CDS YP_924371.1 119717406 4599045 3381009..3381776 1 NC_008699.1 PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: nfa:nfa28560 putative transcriptional regulator; DeoR family transcriptional regulator 3381776 4599045 Noca_3182 Nocardioides sp. JS614 DeoR family transcriptional regulator YP_924371.1 3381009 D 196162 CDS YP_924372.1 119717407 4599046 3381773..3382729 1 NC_008699.1 PFAM: PfkB domain protein; KEGG: nfa:nfa28550 putative fructose-1-phosphate kinase; ribokinase-like domain-containing protein 3382729 4599046 Noca_3183 Nocardioides sp. JS614 ribokinase-like domain-containing protein YP_924372.1 3381773 D 196162 CDS YP_924373.1 119717408 4599047 3382733..3384781 1 NC_008699.1 TIGRFAM: PTS system, fructose-specific, IIB subunnit; PTS system, fructose subfamily, IIA subunit; PTS system, fructose subfamily, IIC subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; phosphotransferase system, EIIC; phosphotransferase system PTS, fructose-specific IIB subunit; KEGG: mmc:Mmcs_0080 phosphotransferase system, fructose IIC component; PTS system fructose subfamily transporter subunit IIC 3384781 4599047 Noca_3184 Nocardioides sp. JS614 PTS system fructose subfamily transporter subunit IIC YP_924373.1 3382733 D 196162 CDS YP_924374.1 119717409 4599048 3384819..3385076 1 NC_008699.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: mmc:Mmcs_0079 phosphotransferase system, HPr; HPr family phosphocarrier protein 3385076 4599048 Noca_3185 Nocardioides sp. JS614 HPr family phosphocarrier protein YP_924374.1 3384819 D 196162 CDS YP_924375.1 119717410 4599049 complement(3385080..3386054) 1 NC_008699.1 KEGG: mbo:Mb2137 probable integral membrane protein; hypothetical protein 3386054 4599049 Noca_3186 Nocardioides sp. JS614 hypothetical protein YP_924375.1 3385080 R 196162 CDS YP_924376.1 119717411 4599050 complement(3386051..3386983) 1 NC_008699.1 TIGRFAM: riboflavin biosynthesis protein RibF; cytidyltransferase-related domain; PFAM: Riboflavin kinase / FAD synthetase; cytidylyltransferase; KEGG: lxx:Lxx07280 riboflavin kinase/ FMN adenyltransferase; riboflavin kinase/FMN adenylyltransferase 3386983 4599050 Noca_3187 Nocardioides sp. JS614 riboflavin kinase/FMN adenylyltransferase YP_924376.1 3386051 R 196162 CDS YP_924377.1 119717412 4599051 complement(3387004..3387873) 1 NC_008699.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 3387873 truB 4599051 truB Nocardioides sp. JS614 tRNA pseudouridine synthase B YP_924377.1 3387004 R 196162 CDS YP_924378.1 119717413 4599052 complement(3387860..3388348) 1 NC_008699.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 3388348 rbfA 4599052 rbfA Nocardioides sp. JS614 ribosome-binding factor A YP_924378.1 3387860 R 196162 CDS YP_924379.1 119717414 4599053 complement(3388521..3391337) 1 NC_008699.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 3391337 infB 4599053 infB Nocardioides sp. JS614 translation initiation factor IF-2 YP_924379.1 3388521 R 196162 CDS YP_924380.1 119717415 4599054 complement(3391439..3391804) 1 NC_008699.1 PFAM: protein of unknown function DUF448; KEGG: mmc:Mmcs_2081 protein of unknown function DUF448; hypothetical protein 3391804 4599054 Noca_3191 Nocardioides sp. JS614 hypothetical protein YP_924380.1 3391439 R 196162 CDS YP_924381.1 119717416 4599055 complement(3391878..3392861) 1 NC_008699.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 3392861 nusA 4599055 nusA Nocardioides sp. JS614 transcription elongation factor NusA YP_924381.1 3391878 R 196162 CDS YP_924382.1 119717417 4599056 complement(3392861..3393388) 1 NC_008699.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 3393388 4599056 Noca_3193 Nocardioides sp. JS614 hypothetical protein YP_924382.1 3392861 R 196162 CDS YP_924383.1 119717418 4599057 3393462..3393908 1 NC_008699.1 hypothetical protein 3393908 4599057 Noca_3194 Nocardioides sp. JS614 hypothetical protein YP_924383.1 3393462 D 196162 CDS YP_924384.1 119717419 4599058 3393901..3394332 1 NC_008699.1 KEGG: sco:SCO5701 hypothetical protein; hypothetical protein 3394332 4599058 Noca_3195 Nocardioides sp. JS614 hypothetical protein YP_924384.1 3393901 D 196162 CDS YP_924385.1 119717420 4599059 complement(3394485..3395198) 1 NC_008699.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: fra:Francci3_1747 HAD-superfamily hydrolase, subfamily IA, variant 1; HAD family hydrolase 3395198 4599059 Noca_3196 Nocardioides sp. JS614 HAD family hydrolase YP_924385.1 3394485 R 196162 CDS YP_924386.1 119717421 4599060 complement(3395195..3396964) 1 NC_008699.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 3396964 4599060 Noca_3197 Nocardioides sp. JS614 prolyl-tRNA synthetase YP_924386.1 3395195 R 196162 CDS YP_924387.1 119717422 4599061 complement(3397310..3398155) 1 NC_008699.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sma:SAV2560 putative acetyltransferase; N-acetyltransferase GCN5 3398155 4599061 Noca_3198 Nocardioides sp. JS614 N-acetyltransferase GCN5 YP_924387.1 3397310 R 196162 CDS YP_924388.1 119717423 4599062 complement(3398192..3398701) 1 NC_008699.1 hypothetical protein 3398701 4599062 Noca_3199 Nocardioides sp. JS614 hypothetical protein YP_924388.1 3398192 R 196162 CDS YP_924389.1 119717424 4599063 complement(3398729..3399871) 1 NC_008699.1 PFAM: phosphoesterase; KEGG: pac:PPA1745 hypothetical protein (phosphoesterase family); phosphoesterase 3399871 4599063 Noca_3200 Nocardioides sp. JS614 phosphoesterase YP_924389.1 3398729 R 196162 CDS YP_924390.1 119717425 4599064 complement(3399868..3401172) 1 NC_008699.1 PFAM: phosphoesterase; KEGG: bam:Bamb_5381 phosphoesterase; phosphoesterase 3401172 4599064 Noca_3201 Nocardioides sp. JS614 phosphoesterase YP_924390.1 3399868 R 196162 CDS YP_924391.1 119717426 4599065 complement(3401198..3402361) 1 NC_008699.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 3402361 ispG 4599065 ispG Nocardioides sp. JS614 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_924391.1 3401198 R 196162 CDS YP_924392.1 119717427 4599066 complement(3402385..3403746) 1 NC_008699.1 PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein; KEGG: sma:SAV2562 putative metalloprotease; peptidase M50 3403746 4599066 Noca_3203 Nocardioides sp. JS614 peptidase M50 YP_924392.1 3402385 R 196162 CDS YP_924393.1 119717428 4599067 complement(3403750..3404868) 1 NC_008699.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 3404868 4599067 Noca_3204 Nocardioides sp. JS614 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_924393.1 3403750 R 196162 CDS YP_924394.1 119717429 4599068 3404982..3406334 1 NC_008699.1 TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; KEGG: rha:RHA1_ro05598 4-aminobutyrate transaminase; 4-aminobutyrate aminotransferase 3406334 4599068 Noca_3205 Nocardioides sp. JS614 4-aminobutyrate aminotransferase YP_924394.1 3404982 D 196162 CDS YP_924395.1 119717430 4599069 complement(3406345..3407337) 1 NC_008699.1 KEGG: rso:RS05802 putative transmembrane protein; putative transmembrane protein 3407337 4599069 Noca_3206 Nocardioides sp. JS614 putative transmembrane protein YP_924395.1 3406345 R 196162 CDS YP_924396.1 119717431 4599070 complement(3407435..3408187) 1 NC_008699.1 PFAM: isochorismatase hydrolase; KEGG: eca:ECA2383 putative isochorismatase; isochorismatase hydrolase 3408187 4599070 Noca_3207 Nocardioides sp. JS614 isochorismatase hydrolase YP_924396.1 3407435 R 196162 CDS YP_924397.1 119717432 4599071 3408507..3408746 1 NC_008699.1 KEGG: mmc:Mmcs_2752 hypothetical protein; hypothetical protein 3408746 4599071 Noca_3208 Nocardioides sp. JS614 hypothetical protein YP_924397.1 3408507 D 196162 CDS YP_924398.1 119717433 4599072 complement(3409154..3409558) 1 NC_008699.1 PFAM: NUDIX hydrolase; KEGG: dar:Daro_3706 NUDIX hydrolase:thiamine monophosphate synthase; NUDIX hydrolase 3409558 4599072 Noca_3209 Nocardioides sp. JS614 NUDIX hydrolase YP_924398.1 3409154 R 196162 CDS YP_924399.1 119717434 4599073 complement(3409719..3409985) 1 NC_008699.1 hypothetical protein 3409985 4599073 Noca_3210 Nocardioides sp. JS614 hypothetical protein YP_924399.1 3409719 R 196162 CDS YP_924400.1 119717435 4599149 complement(3410122..3411189) 1 NC_008699.1 KEGG: nfa:nfa6110 hypothetical protein; hypothetical protein 3411189 4599149 Noca_3211 Nocardioides sp. JS614 hypothetical protein YP_924400.1 3410122 R 196162 CDS YP_924401.1 119717436 4599150 3411375..3411638 1 NC_008699.1 KEGG: rha:RHA1_ro06668 possible helicase; putative helicase 3411638 4599150 Noca_3212 Nocardioides sp. JS614 putative helicase YP_924401.1 3411375 D 196162 CDS YP_924402.1 119717437 4599151 complement(3411651..3412352) 1 NC_008699.1 hypothetical protein 3412352 4599151 Noca_3213 Nocardioides sp. JS614 hypothetical protein YP_924402.1 3411651 R 196162 CDS YP_924403.1 119717438 4599152 complement(3412360..3413196) 1 NC_008699.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV1735 putative ABC transporter permease protein; binding-protein-dependent transport systems inner membrane component 3413196 4599152 Noca_3214 Nocardioides sp. JS614 binding-protein-dependent transport systems inner membrane component YP_924403.1 3412360 R 196162 CDS YP_924404.1 119717439 4599153 complement(3413196..3414044) 1 NC_008699.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV1736 putative ABC transporter permease protein; binding-protein-dependent transport system inner membrane protein 3414044 4599153 Noca_3215 Nocardioides sp. JS614 binding-protein-dependent transport system inner membrane protein YP_924404.1 3413196 R 196162 CDS YP_924405.1 119717440 4599154 complement(3414046..3415263) 1 NC_008699.1 PFAM: extracellular solute-binding protein, family 1; KEGG: sma:SAV1737 putative ABC transporter binding protein; extracellular solute-binding protein 3415263 4599154 Noca_3216 Nocardioides sp. JS614 extracellular solute-binding protein YP_924405.1 3414046 R 196162 CDS YP_924406.1 119717441 4599155 complement(3415260..3416318) 1 NC_008699.1 KEGG: sma:SAV1738 putative ABC transporter ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase 3416318 4599155 Noca_3217 Nocardioides sp. JS614 spermidine/putrescine ABC transporter ATPase YP_924406.1 3415260 R 196162 CDS YP_924407.1 119717442 4599156 3416498..3417895 1 NC_008699.1 PFAM: polysaccharide deacetylase; KEGG: jan:Jann_2517 polysaccharide deacetylase; polysaccharide deacetylase 3417895 4599156 Noca_3218 Nocardioides sp. JS614 polysaccharide deacetylase YP_924407.1 3416498 D 196162 CDS YP_924408.1 119717443 4599157 3418237..3419520 1 NC_008699.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: mpa:MAP1053 hypothetical protein; HNH endonuclease 3419520 4599157 Noca_3219 Nocardioides sp. JS614 HNH endonuclease YP_924408.1 3418237 D 196162 CDS YP_924409.1 119717444 4599158 3419517..3420389 1 NC_008699.1 KEGG: nfa:nfa40670 putative translation initiation factor IF-2; hypothetical protein 3420389 4599158 Noca_3220 Nocardioides sp. JS614 hypothetical protein YP_924409.1 3419517 D 196162 CDS YP_924410.1 119717445 4599159 complement(3420401..3421624) 1 NC_008699.1 PFAM: Saccharopine dehydrogenase; KEGG: mmc:Mmcs_4946 saccharopine dehydrogenase; saccharopine dehydrogenase 3421624 4599159 Noca_3221 Nocardioides sp. JS614 saccharopine dehydrogenase YP_924410.1 3420401 R 196162 CDS YP_924411.1 119717446 4599160 complement(3421752..3423185) 1 NC_008699.1 PFAM: aldehyde dehydrogenase; KEGG: rxy:Rxyl_2917 aldehyde dehydrogenase; aldehyde dehydrogenase 3423185 4599160 Noca_3222 Nocardioides sp. JS614 aldehyde dehydrogenase YP_924411.1 3421752 R 196162 CDS YP_924412.1 119717447 4599161 complement(3423265..3424881) 1 NC_008699.1 PFAM: Amidohydrolase 3; KEGG: rha:RHA1_ro00158 probable metal-dependant glycoprotease; amidohydrolase 3 3424881 4599161 Noca_3223 Nocardioides sp. JS614 amidohydrolase 3 YP_924412.1 3423265 R 196162 CDS YP_924413.1 119717448 4599162 complement(3424882..3425883) 1 NC_008699.1 TIGRFAM: putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: mmc:Mmcs_1825 agmatinase, putative; agmatinase 3425883 4599162 Noca_3224 Nocardioides sp. JS614 agmatinase YP_924413.1 3424882 R 196162 CDS YP_924414.1 119717449 4599163 3425991..3427361 1 NC_008699.1 PFAM: aminotransferase class-III; KEGG: sma:SAV2612 putative aminotransferase; hypothetical protein 3427361 4599163 Noca_3225 Nocardioides sp. JS614 hypothetical protein YP_924414.1 3425991 D 196162 CDS YP_924415.1 119717450 4599164 complement(3427386..3428255) 1 NC_008699.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV2588 putative polyamine ABC-transporter integral membrane protein; binding-protein-dependent transport system inner membrane protein 3428255 4599164 Noca_3226 Nocardioides sp. JS614 binding-protein-dependent transport system inner membrane protein YP_924415.1 3427386 R 196162 CDS YP_924416.1 119717451 4599165 complement(3428255..3429127) 1 NC_008699.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV2589 putative polyamine ABC-transporter permease protein; binding-protein-dependent transport system inner membrane protein 3429127 4599165 Noca_3227 Nocardioides sp. JS614 binding-protein-dependent transport system inner membrane protein YP_924416.1 3428255 R 196162 CDS YP_924417.1 119717452 4599166 complement(3429145..3430278) 1 NC_008699.1 KEGG: sma:SAV2590 putative polyamine ABC-transporter ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase 3430278 4599166 Noca_3228 Nocardioides sp. JS614 spermidine/putrescine ABC transporter ATPase YP_924417.1 3429145 R 196162 CDS YP_924418.1 119717453 4599167 complement(3430271..3431497) 1 NC_008699.1 PFAM: extracellular solute-binding protein, family 1; KEGG: sma:SAV2591 putative ABC-transporter polyamine-binding lipoprotein; extracellular solute-binding protein 3431497 4599167 Noca_3229 Nocardioides sp. JS614 extracellular solute-binding protein YP_924418.1 3430271 R 196162 CDS YP_924419.1 119717454 4599168 3431647..3432135 1 NC_008699.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: fra:Francci3_3779 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 3432135 4599168 Noca_3230 Nocardioides sp. JS614 AsnC family transcriptional regulator YP_924419.1 3431647 D 196162 CDS YP_924420.1 119717455 4599169 3432120..3433520 1 NC_008699.1 PFAM: FAD dependent oxidoreductase; KEGG: fal:FRAAL6023 hypothetical protein; putative signal peptide; FAD dependent oxidoreductase 3433520 4599169 Noca_3231 Nocardioides sp. JS614 FAD dependent oxidoreductase YP_924420.1 3432120 D 196162 CDS YP_924421.1 119717456 4599170 complement(3433521..3434981) 1 NC_008699.1 PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: sco:SCO6736 metallopeptidase; peptidase M1, membrane alanine aminopeptidase 3434981 4599170 Noca_3232 Nocardioides sp. JS614 peptidase M1, membrane alanine aminopeptidase YP_924421.1 3433521 R 196162 CDS YP_924422.1 119717457 4599171 3435379..3436101 1 NC_008699.1 PFAM: protein of unknown function RIO1; KEGG: eba:ebA56 RIO-type serine/threonine protein kinase; hypothetical protein 3436101 4599171 Noca_3233 Nocardioides sp. JS614 hypothetical protein YP_924422.1 3435379 D 196162 CDS YP_924423.1 119717458 4599172 3436121..3437206 1 NC_008699.1 KEGG: sma:SAV2616 hypothetical protein; hypothetical protein 3437206 4599172 Noca_3234 Nocardioides sp. JS614 hypothetical protein YP_924423.1 3436121 D 196162 CDS YP_924424.1 119717459 4599173 3437375..3438874 1 NC_008699.1 PFAM: metallophosphoesterase; KEGG: sma:SAV5405 hypothetical protein; metallophosphoesterase 3438874 4599173 Noca_3235 Nocardioides sp. JS614 metallophosphoesterase YP_924424.1 3437375 D 196162 CDS YP_924425.1 119717460 4599174 complement(3438898..3440079) 1 NC_008699.1 PFAM: glycosyl transferase, group 1; KEGG: fra:Francci3_1907 glycosyl transferase, group 1; group 1 glycosyl transferase 3440079 4599174 Noca_3236 Nocardioides sp. JS614 group 1 glycosyl transferase YP_924425.1 3438898 R 196162 CDS YP_924426.1 119717461 4599175 complement(3440180..3441310) 1 NC_008699.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 3441310 4599175 Noca_3237 Nocardioides sp. JS614 ribosomal RNA large subunit methyltransferase N YP_924426.1 3440180 R 196162 CDS YP_924427.1 119717462 4599176 complement(3441378..3441722) 1 NC_008699.1 hypothetical protein 3441722 4599176 Noca_3238 Nocardioides sp. JS614 hypothetical protein YP_924427.1 3441378 R 196162 CDS YP_924428.1 119717463 4599177 complement(3441787..3442713) 1 NC_008699.1 PFAM: phosphatidate cytidylyltransferase; KEGG: tfu:Tfu_0680 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 3442713 4599177 Noca_3239 Nocardioides sp. JS614 phosphatidate cytidylyltransferase YP_924428.1 3441787 R 196162 CDS YP_924429.1 119717464 4599178 complement(3442728..3443285) 1 NC_008699.1 PFAM: ribosome recycling factor; KEGG: pac:PPA1518 ribosome recycling factor; ribosome recycling factor 3443285 4599178 Noca_3240 Nocardioides sp. JS614 ribosome recycling factor YP_924429.1 3442728 R 196162 CDS YP_924430.1 119717465 4599179 complement(3443328..3444041) 1 NC_008699.1 TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: rha:RHA1_ro06580 uridylate kinase; uridylate kinase 3444041 4599179 Noca_3241 Nocardioides sp. JS614 uridylate kinase YP_924430.1 3443328 R 196162 CDS YP_924431.1 119717466 4599180 complement(3444146..3444958) 1 NC_008699.1 TIGRFAM: translation elongation factor Ts; PFAM: ubiquitin-associated- domain-containing protein; elongation factor Ts; KEGG: mpa:MAP2955c elongation factor EF-Ts; translation elongation factor Ts (EF-Ts) 3444958 4599180 Noca_3242 Nocardioides sp. JS614 translation elongation factor Ts (EF-Ts) YP_924431.1 3444146 R 196162 CDS YP_924432.1 119717467 4599181 complement(3445022..3445945) 1 NC_008699.1 PFAM: ribosomal protein S2; KEGG: sco:SCO5624 30S ribosomal protein S2; 30S ribosomal protein S2P 3445945 4599181 Noca_3243 Nocardioides sp. JS614 30S ribosomal protein S2P YP_924432.1 3445022 R 196162 CDS YP_924433.1 119717468 4599182 3446350..3446985 1 NC_008699.1 PFAM: peptidase M23B; KEGG: sco:SCO5623 hypothetical protein; peptidase M23B 3446985 4599182 Noca_3244 Nocardioides sp. JS614 peptidase M23B YP_924433.1 3446350 D 196162 CDS YP_924434.1 119717469 4599183 complement(3446958..3447896) 1 NC_008699.1 PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: nfa:nfa41390 putative recombinase; phage integrase family protein 3447896 4599183 Noca_3245 Nocardioides sp. JS614 phage integrase family protein YP_924434.1 3446958 R 196162 CDS YP_924435.1 119717470 4599184 complement(3447925..3449061) 1 NC_008699.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: sma:SAV2631 putative DNA processing Smf-family protein; DNA protecting protein DprA 3449061 4599184 Noca_3246 Nocardioides sp. JS614 DNA protecting protein DprA YP_924435.1 3447925 R 196162 CDS YP_924436.1 119717471 4599185 complement(3449058..3450644) 1 NC_008699.1 KEGG: sco:SCO5603 magnesium chelatase family protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; SMART: AAA ATPase; Mg chelatase subunit ChlI 3450644 4599185 Noca_3247 Nocardioides sp. JS614 Mg chelatase subunit ChlI YP_924436.1 3449058 R 196162 CDS YP_924437.1 119717472 4599186 complement(3450644..3451018) 1 NC_008699.1 PFAM: protein of unknown function UPF0102; KEGG: sco:SCO5602 predicted endonuclease; hypothetical protein 3451018 4599186 Noca_3248 Nocardioides sp. JS614 hypothetical protein YP_924437.1 3450644 R 196162 CDS YP_924438.1 119717473 4599187 3451181..3452338 1 NC_008699.1 PFAM: major facilitator superfamily MFS_1; KEGG: cvi:CV1398 hypothetical protein; major facilitator transporter 3452338 4599187 Noca_3249 Nocardioides sp. JS614 major facilitator transporter YP_924438.1 3451181 D 196162 CDS YP_924439.1 119717474 4599188 complement(3452365..3454086) 1 NC_008699.1 KEGG: bxe:Bxe_A2791 predicted membrane protein; hypothetical protein 3454086 4599188 Noca_3250 Nocardioides sp. JS614 hypothetical protein YP_924439.1 3452365 R 196162 CDS YP_924440.1 119717475 4599189 complement(3454083..3454583) 1 NC_008699.1 PFAM: TadE family protein; KEGG: bam:Bamb_1401 TadE family protein; TadE family protein 3454583 4599189 Noca_3251 Nocardioides sp. JS614 TadE family protein YP_924440.1 3454083 R 196162 CDS YP_924441.1 119717476 4599114 complement(3454698..3455006) 1 NC_008699.1 KEGG: sma:SAV2634 hypothetical protein; hypothetical protein 3455006 4599114 Noca_3252 Nocardioides sp. JS614 hypothetical protein YP_924441.1 3454698 R 196162 CDS YP_924442.1 119717477 4599115 complement(3455003..3455725) 1 NC_008699.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 3455725 rnhB 4599115 rnhB Nocardioides sp. JS614 ribonuclease HII YP_924442.1 3455003 R 196162 CDS YP_924443.1 119717478 4599116 complement(3455747..3456550) 1 NC_008699.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; KEGG: sco:SCO5597 putative signal peptidase I; signal peptidase I 3456550 4599116 Noca_3254 Nocardioides sp. JS614 signal peptidase I YP_924443.1 3455747 R 196162 CDS YP_924444.1 119717479 4599117 complement(3456587..3456937) 1 NC_008699.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 3456937 rplS 4599117 rplS Nocardioides sp. JS614 50S ribosomal protein L19 YP_924444.1 3456587 R 196162 CDS YP_924445.1 119717480 4599118 complement(3457126..3458283) 1 NC_008699.1 KEGG: lxx:Lxx14850 tRNA-(guanine-N1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: GCN5-related N-acetyltransferase; tRNA (guanine-N1-)-methyltransferase; tRNA (Guanine37-N1) methyltransferase 3458283 4599118 Noca_3256 Nocardioides sp. JS614 tRNA (Guanine37-N1) methyltransferase YP_924445.1 3457126 R 196162 CDS YP_924446.1 119717481 4599119 complement(3458283..3458837) 1 NC_008699.1 TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: tfu:Tfu_0664 16S rRNA processing protein RimM; 16S rRNA processing protein RimM 3458837 4599119 Noca_3257 Nocardioides sp. JS614 16S rRNA processing protein RimM YP_924446.1 3458283 R 196162 CDS YP_924447.1 119717482 4599120 complement(3458842..3459522) 1 NC_008699.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mbo:Mb0825c hypothetical protein; N-acetyltransferase GCN5 3459522 4599120 Noca_3258 Nocardioides sp. JS614 N-acetyltransferase GCN5 YP_924447.1 3458842 R 196162 CDS YP_924448.1 119717483 4599121 complement(3459634..3459876) 1 NC_008699.1 KEGG: sma:SAV2643 hypothetical protein; hypothetical protein 3459876 4599121 Noca_3259 Nocardioides sp. JS614 hypothetical protein YP_924448.1 3459634 R 196162 CDS YP_924449.1 119717484 4599122 complement(3459882..3461279) 1 NC_008699.1 PFAM: ribosomal protein S16; KEGG: rha:RHA1_ro06535 30S ribosomal protein S16; 30S ribosomal protein S16 3461279 4599122 Noca_3260 Nocardioides sp. JS614 30S ribosomal protein S16 YP_924449.1 3459882 R 196162 CDS YP_924450.1 119717485 4599123 3461515..3462402 1 NC_008699.1 PFAM: response regulator receiver; KEGG: sco:SCO3741 putative response regulator; response regulator receiver 3462402 4599123 Noca_3261 Nocardioides sp. JS614 response regulator receiver YP_924450.1 3461515 D 196162 CDS YP_924451.1 119717486 4599124 complement(3462411..3463496) 1 NC_008699.1 PFAM: amidohydrolase; KEGG: sma:SAV6403 hypothetical protein; amidohydrolase 3463496 4599124 Noca_3262 Nocardioides sp. JS614 amidohydrolase YP_924451.1 3462411 R 196162 CDS YP_924452.1 119717487 4599125 complement(3463557..3465593) 1 NC_008699.1 PFAM: glycoside hydrolase, family 3 domain protein; KEGG: sma:SAV2708 putative glycosyl hydrolase; beta-glucosidase 3465593 4599125 Noca_3263 Nocardioides sp. JS614 beta-glucosidase YP_924452.1 3463557 R 196162 CDS YP_924453.1 119717488 4599126 3465735..3466898 1 NC_008699.1 PFAM: ROK family protein; KEGG: sma:SAV2248 ROK-family transcriptional regulator; ROK family protein 3466898 4599126 Noca_3264 Nocardioides sp. JS614 ROK family protein YP_924453.1 3465735 D 196162 CDS YP_924454.1 119717489 4599127 complement(3466919..3467287) 1 NC_008699.1 KEGG: rha:RHA1_ro00122 hypothetical protein; hypothetical protein 3467287 4599127 Noca_3265 Nocardioides sp. JS614 hypothetical protein YP_924454.1 3466919 R 196162 CDS YP_924455.1 119717490 4599128 complement(3467498..3469069) 1 NC_008699.1 KEGG: sma:SAV2648 putative signal recognition particle; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54, G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase; signal recognition particle subunit FFH/SRP54 (srp54) 3469069 4599128 Noca_3266 Nocardioides sp. JS614 signal recognition particle subunit FFH/SRP54 (srp54) YP_924455.1 3467498 R 196162 CDS YP_924456.1 119717491 4599129 complement(3469207..3471330) 1 NC_008699.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; also involved in adenylylating and deadelnylyating GlnK; PII uridylyl-transferase 3471330 4599129 Noca_3267 Nocardioides sp. JS614 PII uridylyl-transferase YP_924456.1 3469207 R 196162 CDS YP_924457.1 119717492 4599130 complement(3471509..3471847) 1 NC_008699.1 PFAM: nitrogen regulatory protein P-II; KEGG: sco:SCO5584 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 3471847 4599130 Noca_3268 Nocardioides sp. JS614 nitrogen regulatory protein P-II YP_924457.1 3471509 R 196162 CDS YP_924458.1 119717493 4599131 complement(3471844..3473169) 1 NC_008699.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: rha:RHA1_ro06530 ammonium transporter; ammonium transporter 3473169 4599131 Noca_3269 Nocardioides sp. JS614 ammonium transporter YP_924458.1 3471844 R 196162 CDS YP_924459.1 119717494 4599132 complement(3473350..3474480) 1 NC_008699.1 KEGG: sco:SCO5580 putative prokaryotic docking protein; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY 3474480 4599132 Noca_3270 Nocardioides sp. JS614 signal recognition particle-docking protein FtsY YP_924459.1 3473350 R 196162 CDS YP_924460.1 119717495 4599133 complement(3474520..3474774) 1 NC_008699.1 hypothetical protein 3474774 4599133 Noca_3271 Nocardioides sp. JS614 hypothetical protein YP_924460.1 3474520 R 196162 CDS YP_924461.1 119717496 4599134 complement(3474866..3475315) 1 NC_008699.1 PFAM: thioesterase superfamily protein; KEGG: bur:Bcep18194_A4557 thioesterase superfamily; thioesterase superfamily protein 3475315 4599134 Noca_3272 Nocardioides sp. JS614 thioesterase superfamily protein YP_924461.1 3474866 R 196162 CDS YP_924462.1 119717497 4599135 complement(3475315..3478881) 1 NC_008699.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: sma:SAV2658 putative chromosome segregation protein; condensin subunit Smc 3478881 4599135 Noca_3273 Nocardioides sp. JS614 condensin subunit Smc YP_924462.1 3475315 R 196162 CDS YP_924463.1 119717498 4599136 complement(3479149..3480318) 1 NC_008699.1 PFAM: aminotransferase, class V; KEGG: hma:rrnAC1999 aminotransferase class V; alanine-glyoxylate aminotransferase 3480318 4599136 Noca_3274 Nocardioides sp. JS614 alanine-glyoxylate aminotransferase YP_924463.1 3479149 R 196162 CDS YP_924464.1 119717499 4599137 complement(3480471..3481688) 1 NC_008699.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: fra:Francci3_3430 putative transposase, IS891/IS1136/IS1341; transposase 3481688 4599137 Noca_3275 Nocardioides sp. JS614 transposase YP_924464.1 3480471 R 196162 CDS YP_924465.1 119717500 4599138 3482304..3483038 1 NC_008699.1 KEGG: sco:SCO1931 hypothetical protein; hypothetical protein 3483038 4599138 Noca_3276 Nocardioides sp. JS614 hypothetical protein YP_924465.1 3482304 D 196162 CDS YP_924466.1 119717501 4599139 complement(3483153..3484514) 1 NC_008699.1 PFAM: FAD linked oxidase domain protein; KEGG: rha:RHA1_ro01589 probable glycolate oxidase FAD-linked subunit; FAD linked oxidase domain-containing protein 3484514 4599139 Noca_3277 Nocardioides sp. JS614 FAD linked oxidase domain-containing protein YP_924466.1 3483153 R 196162 CDS YP_924467.1 119717502 4599140 complement(3484532..3485779) 1 NC_008699.1 PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1; KEGG: sma:SAV6301 antibiotic transport protein; major facilitator transporter 3485779 4599140 Noca_3278 Nocardioides sp. JS614 major facilitator transporter YP_924467.1 3484532 R 196162 CDS YP_924468.1 119717503 4599141 complement(3485792..3487297) 1 NC_008699.1 hypothetical protein 3487297 4599141 Noca_3279 Nocardioides sp. JS614 hypothetical protein YP_924468.1 3485792 R 196162 CDS YP_924469.1 119717504 4599142 complement(3487632..3488519) 1 NC_008699.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 3488519 4599142 Noca_3280 Nocardioides sp. JS614 formamidopyrimidine-DNA glycosylase YP_924469.1 3487632 R 196162 CDS YP_924470.1 119717505 4599143 complement(3488533..3489363) 1 NC_008699.1 PFAM: ribonuclease III; double-stranded RNA binding domain protein; KEGG: sma:SAV2665 putative ribonuclease III; ribonuclease III 3489363 4599143 Noca_3281 Nocardioides sp. JS614 ribonuclease III YP_924470.1 3488533 R 196162 CDS YP_924471.1 119717506 4599144 complement(3489513..3490091) 1 NC_008699.1 PFAM: protein of unknown function DUF177; KEGG: tfu:Tfu_0649 conserved hypothetical protein; hypothetical protein 3490091 4599144 Noca_3282 Nocardioides sp. JS614 hypothetical protein YP_924471.1 3489513 R 196162 CDS YP_924472.1 119717507 4599145 complement(3490150..3490629) 1 NC_008699.1 KEGG: rha:RHA1_ro06519 pantetheine-phosphate adenylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain; PFAM: cytidylyltransferase; pantetheine-phosphate adenylyltransferase 3490629 4599145 Noca_3283 Nocardioides sp. JS614 pantetheine-phosphate adenylyltransferase YP_924472.1 3490150 R 196162 CDS YP_924473.1 119717508 4599146 complement(3490639..3491235) 1 NC_008699.1 TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: tfu:Tfu_0647 conserved hypothetical protein 95; putative methyltransferase 3491235 4599146 Noca_3284 Nocardioides sp. JS614 putative methyltransferase YP_924473.1 3490639 R 196162 CDS YP_924474.1 119717509 4599147 complement(3491243..3493495) 1 NC_008699.1 KEGG: sco:SCO5566 putative ATP-dependent DNA helicase; TIGRFAM: ATP-dependent DNA helicase RecG; PFAM: helicase domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; ATP-dependent DNA helicase RecG 3493495 4599147 Noca_3285 Nocardioides sp. JS614 ATP-dependent DNA helicase RecG YP_924474.1 3491243 R 196162 CDS YP_924475.1 119717510 4599148 complement(3493505..3495163) 1 NC_008699.1 PFAM: Dak phosphatase; KEGG: sco:SCO5565 hypothetical protein; Dak phosphatase 3495163 4599148 Noca_3286 Nocardioides sp. JS614 Dak phosphatase YP_924475.1 3493505 R 196162 CDS YP_924476.1 119717511 4598159 3495346..3495531 1 NC_008699.1 PFAM: ribosomal protein L28; KEGG: sco:SCO5564 putative 50S ribosomal protein L28; 50S ribosomal protein L28 3495531 4598159 Noca_3287 Nocardioides sp. JS614 50S ribosomal protein L28 YP_924476.1 3495346 D 196162 CDS YP_924477.1 119717512 4598160 complement(3495603..3496553) 1 NC_008699.1 catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase 3496553 4598160 Noca_3288 Nocardioides sp. JS614 thiamine monophosphate kinase YP_924477.1 3495603 R 196162 CDS YP_924478.1 119717513 4598161 3496657..3496893 1 NC_008699.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: fal:FRAAL5817 hypothetical protein; AsnC family transcriptional regulator 3496893 4598161 Noca_3289 Nocardioides sp. JS614 AsnC family transcriptional regulator YP_924478.1 3496657 D 196162 CDS YP_924479.1 119717514 4598162 3496906..3497430 1 NC_008699.1 KEGG: tfu:Tfu_0641 hypothetical protein; hypothetical protein 3497430 4598162 Noca_3290 Nocardioides sp. JS614 hypothetical protein YP_924479.1 3496906 D 196162 CDS YP_924480.1 119717515 4598163 complement(3497459..3498580) 1 NC_008699.1 TIGRFAM: D-alanine--D-alanine ligase; PFAM: ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; D-alanine--D-alanine ligase domain protein; KEGG: sco:SCO5560 D-alanine-D-alanine ligase; D-alanine--D-alanine ligase 3498580 4598163 Noca_3291 Nocardioides sp. JS614 D-alanine--D-alanine ligase YP_924480.1 3497459 R 196162 CDS YP_924481.1 119717516 4598164 3498613..3499692 1 NC_008699.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: cgb:cg3086 putative L,L-cystathionine gamma-lyase; Cys/Met metabolism pyridoxal-phosphate-dependent protein 3499692 4598164 Noca_3292 Nocardioides sp. JS614 Cys/Met metabolism pyridoxal-phosphate-dependent protein YP_924481.1 3498613 D 196162 CDS YP_924482.1 119717517 4598165 complement(3499740..3500747) 1 NC_008699.1 PFAM: NADP oxidoreductase, coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE, N-terminal domain protein; KEGG: sma:SAV2680 putative glycerol-3-phosphate dehydrogenase, NAD(P)H-dependent; glycerol-3-phosphate dehydrogenase (NAD(P)(+)) 3500747 4598165 Noca_3293 Nocardioides sp. JS614 glycerol-3-phosphate dehydrogenase (NAD(P)(+)) YP_924482.1 3499740 R 196162 CDS YP_924483.1 119717518 4598166 complement(3500744..3501547) 1 NC_008699.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: sco:SCO5558 acyltransferase; phospholipid/glycerol acyltransferase 3501547 4598166 Noca_3294 Nocardioides sp. JS614 phospholipid/glycerol acyltransferase YP_924483.1 3500744 R 196162 CDS YP_924484.1 119717519 4598167 3501638..3502273 1 NC_008699.1 KEGG: sco:SCO5557a hypothetical protein; hypothetical protein 3502273 4598167 Noca_3295 Nocardioides sp. JS614 hypothetical protein YP_924484.1 3501638 D 196162 CDS YP_924485.1 119717520 4598168 complement(3502342..3502950) 1 NC_008699.1 PFAM: histone family protein DNA-binding protein; KEGG: mpa:MAP3024c HupB; nucleoid protein Hbs 3502950 4598168 Noca_3296 Nocardioides sp. JS614 nucleoid protein Hbs YP_924485.1 3502342 R 196162 CDS YP_924486.1 119717521 4598169 complement(3503181..3503789) 1 NC_008699.1 KEGG: rha:RHA1_ro06500 3-isopropylmalate dehydratase small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; 3-isopropylmalate dehydratase small subunit 3503789 4598169 Noca_3297 Nocardioides sp. JS614 3-isopropylmalate dehydratase small subunit YP_924486.1 3503181 R 196162 CDS YP_924487.1 119717522 4598170 complement(3503791..3505206) 1 NC_008699.1 TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: aconitate hydratase domain protein; KEGG: sco:SCO5553 3-isopropylmalate dehydratase large subunit; 3-isopropylmalate dehydratase large subunit 3505206 4598170 Noca_3298 Nocardioides sp. JS614 3-isopropylmalate dehydratase large subunit YP_924487.1 3503791 R 196162 CDS YP_924488.1 119717523 4598171 3505319..3506041 1 NC_008699.1 PFAM: regulatory proteins, IclR; KEGG: sma:SAV2687 IclR-family transcriptional regulator; regulatory proteins IclR 3506041 4598171 Noca_3299 Nocardioides sp. JS614 regulatory proteins IclR YP_924488.1 3505319 D 196162 CDS YP_924489.1 119717524 4598172 complement(3506105..3506584) 1 NC_008699.1 KEGG: pat:Patl_3876 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; methylated-DNA--protein-cysteine methyltransferase 3506584 4598172 Noca_3300 Nocardioides sp. JS614 methylated-DNA--protein-cysteine methyltransferase YP_924489.1 3506105 R 196162 CDS YP_924490.1 119717525 4598173 complement(3506586..3508070) 1 NC_008699.1 PFAM: helix-turn-helix- domain containing protein, AraC type; HhH-GPD family protein; Ada, metal-binding domain protein; AlkA domain protein; KEGG: sco:SCO6461 putative ADA-like regulatory protein; DNA-3-methyladenine glycosylase II / transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase 3508070 4598173 Noca_3301 Nocardioides sp. JS614 DNA-3-methyladenine glycosylase II / transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase YP_924490.1 3506586 R 196162 CDS YP_924491.1 119717526 4598174 3508257..3509477 1 NC_008699.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: sco:SCO3042 transcriptional regulator; cell envelope-related transcriptional attenuator 3509477 4598174 Noca_3302 Nocardioides sp. JS614 cell envelope-related transcriptional attenuator YP_924491.1 3508257 D 196162 CDS YP_924492.1 119717527 4598175 complement(3509518..3510468) 1 NC_008699.1 PFAM: Bile acid:sodium symporter; KEGG: rpe:RPE_3198 bile acid:sodium symporter; bile acid:sodium symporter 3510468 4598175 Noca_3303 Nocardioides sp. JS614 bile acid:sodium symporter YP_924492.1 3509518 R 196162 CDS YP_924493.1 119717528 4598176 complement(3510465..3511205) 1 NC_008699.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: sil:SPO0795 oxidoreductase, short chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 3511205 4598176 Noca_3304 Nocardioides sp. JS614 short-chain dehydrogenase/reductase SDR YP_924493.1 3510465 R 196162 CDS YP_924494.1 119717529 4598177 complement(3511207..3512151) 1 NC_008699.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: rpe:RPE_3197 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 3512151 4598177 Noca_3305 Nocardioides sp. JS614 NAD-dependent epimerase/dehydratase YP_924494.1 3511207 R 196162 CDS YP_924495.1 119717530 4600198 complement(3512158..3513924) 1 NC_008699.1 PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: afu:AF2100 acetolactate synthase large subunit; thiamine pyrophosphate binding domain-containing protein 3513924 4600198 Noca_3306 Nocardioides sp. JS614 thiamine pyrophosphate binding domain-containing protein YP_924495.1 3512158 R 196162 CDS YP_924496.1 119717531 4600199 3514040..3515146 1 NC_008699.1 KEGG: mpa:MAP3677 hypothetical protein; hypothetical protein 3515146 4600199 Noca_3307 Nocardioides sp. JS614 hypothetical protein YP_924496.1 3514040 D 196162 CDS YP_924497.1 119717532 4600200 complement(3515182..3515901) 1 NC_008699.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pol:Bpro_2645 methyltransferase type 11; type 11 methyltransferase 3515901 4600200 Noca_3308 Nocardioides sp. JS614 type 11 methyltransferase YP_924497.1 3515182 R 196162 CDS YP_924498.1 119717533 4600201 complement(3515972..3516550) 1 NC_008699.1 KEGG: fal:FRAAL0869 hypothetical protein; peroxiredoxins-like protein 3516550 4600201 Noca_3309 Nocardioides sp. JS614 peroxiredoxins-like protein YP_924498.1 3515972 R 196162 CDS YP_924499.1 119717534 4600202 complement(3516608..3518146) 1 NC_008699.1 PFAM: regulatory protein, LuxR; metal-dependent phosphohydrolase, HD sub domain; Bacterio-opsin activator, HTH domain protein; KEGG: rha:RHA1_ro06927 hypothetical protein; regulatory protein LuxR 3518146 4600202 Noca_3310 Nocardioides sp. JS614 regulatory protein LuxR YP_924499.1 3516608 R 196162 CDS YP_924500.1 119717535 4600203 3518334..3519443 1 NC_008699.1 TIGRFAM: uncharacterized enzyme; PFAM: glutamate--cysteine ligase, GCS2; KEGG: cef:CE2886 hypothetical protein; hypothetical protein 3519443 4600203 Noca_3311 Nocardioides sp. JS614 hypothetical protein YP_924500.1 3518334 D 196162 CDS YP_924501.1 119717536 4600204 complement(3519450..3520565) 1 NC_008699.1 KEGG: rxy:Rxyl_1168 peptidase M29, aminopeptidase II; leucyl aminopeptidase 3520565 4600204 Noca_3312 Nocardioides sp. JS614 leucyl aminopeptidase YP_924501.1 3519450 R 196162 CDS YP_924502.1 119717537 4600205 complement(3520562..3522073) 1 NC_008699.1 PFAM: carbohydrate kinase, FGGY; KEGG: rde:RD1_3760 xylulose kinase, putative; carbohydrate kinase 3522073 4600205 Noca_3313 Nocardioides sp. JS614 carbohydrate kinase YP_924502.1 3520562 R 196162 CDS YP_924503.1 119717538 4600206 complement(3522073..3522879) 1 NC_008699.1 PFAM: photosystem I assembly BtpA; KEGG: mmc:Mmcs_2423 photosystem I assembly BtpA; photosystem I assembly BtpA 3522879 4600206 Noca_3314 Nocardioides sp. JS614 photosystem I assembly BtpA YP_924503.1 3522073 R 196162 CDS YP_924504.1 119717539 4600207 complement(3522950..3523573) 1 NC_008699.1 PFAM: Dak phosphatase; KEGG: tfu:Tfu_1716 glycerone kinase; Dak phosphatase 3523573 4600207 Noca_3315 Nocardioides sp. JS614 Dak phosphatase YP_924504.1 3522950 R 196162 CDS YP_924505.1 119717540 4600208 complement(3523577..3524578) 1 NC_008699.1 PFAM: Dak kinase; KEGG: tfu:Tfu_1716 glycerone kinase; Glycerone kinase 3524578 4600208 Noca_3316 Nocardioides sp. JS614 Glycerone kinase YP_924505.1 3523577 R 196162 CDS YP_924506.1 119717541 4600209 complement(3524593..3525687) 1 NC_008699.1 PFAM: inner-membrane translocator; KEGG: atc:AGR_L_81 putative permease component of transport system, probably ribose specific; inner-membrane translocator 3525687 4600209 Noca_3317 Nocardioides sp. JS614 inner-membrane translocator YP_924506.1 3524593 R 196162 CDS YP_924507.1 119717542 4600210 complement(3525684..3526706) 1 NC_008699.1 PFAM: inner-membrane translocator; KEGG: atc:AGR_L_83 putative permease component of transport system, probably ribose specific; inner-membrane translocator 3526706 4600210 Noca_3318 Nocardioides sp. JS614 inner-membrane translocator YP_924507.1 3525684 R 196162 CDS YP_924508.1 119717543 4600211 complement(3526703..3528202) 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: atc:AGR_L_85 ABC transporter ATP binding protein; ABC transporter-like protein 3528202 4600211 Noca_3319 Nocardioides sp. JS614 ABC transporter-like protein YP_924508.1 3526703 R 196162 CDS YP_924509.1 119717544 4600212 complement(3528281..3529327) 1 NC_008699.1 KEGG: bxe:Bxe_C1270 ABC sugar transporter, periplasmic ligand binding protein; ABC sugar transporter, periplasmic ligand binding protein 3529327 4600212 Noca_3320 Nocardioides sp. JS614 ABC sugar transporter, periplasmic ligand binding protein YP_924509.1 3528281 R 196162 CDS YP_924510.1 119717545 4600213 3529520..3530257 1 NC_008699.1 PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: rha:RHA1_ro11060 transcriptional regulator, DeoR family; DeoR family transcriptional regulator 3530257 4600213 Noca_3321 Nocardioides sp. JS614 DeoR family transcriptional regulator YP_924510.1 3529520 D 196162 CDS YP_924511.1 119717546 4600214 complement(3530390..3531406) 1 NC_008699.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pto:PTO1249 alcohol dehydrogenase; alcohol dehydrogenase 3531406 4600214 Noca_3322 Nocardioides sp. JS614 alcohol dehydrogenase YP_924511.1 3530390 R 196162 CDS YP_924512.1 119717547 4600215 complement(3531514..3532533) 1 NC_008699.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: gvi:glr1554 probable serine proteinase; peptidase S8/S53 subtilisin kexin sedolisin 3532533 4600215 Noca_3323 Nocardioides sp. JS614 peptidase S8/S53 subtilisin kexin sedolisin YP_924512.1 3531514 R 196162 CDS YP_924513.1 119717548 4600216 complement(3532686..3532991) 1 NC_008699.1 KEGG: sus:Acid_1047 conserved hypothetical cytosolic protein; hypothetical protein 3532991 4600216 Noca_3324 Nocardioides sp. JS614 hypothetical protein YP_924513.1 3532686 R 196162 CDS YP_924514.1 119717549 4600217 3533097..3533375 1 NC_008699.1 TIGRFAM: prevent-host-death family protein; KEGG: fra:Francci3_0142 prevent-host-death protein; prevent-host-death family protein 3533375 4600217 Noca_3325 Nocardioides sp. JS614 prevent-host-death family protein YP_924514.1 3533097 D 196162 CDS YP_924515.1 119717550 4600218 3533365..3533796 1 NC_008699.1 PFAM: PilT protein domain protein; KEGG: fra:Francci3_0141 PilT protein-like; PilT domain-containing protein 3533796 4600218 Noca_3326 Nocardioides sp. JS614 PilT domain-containing protein YP_924515.1 3533365 D 196162 CDS YP_924516.1 119717551 4600219 3533876..3534355 1 NC_008699.1 PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: rxy:Rxyl_1758 alcohol dehydrogenase, zinc-binding protein; alcohol dehydrogenase 3534355 4600219 Noca_3327 Nocardioides sp. JS614 alcohol dehydrogenase YP_924516.1 3533876 D 196162 CDS YP_924517.1 119717552 4600220 3534418..3535050 1 NC_008699.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rxy:Rxyl_0122 methyltransferase type 11; phosphatidylethanolamine N-methyltransferase/phosphatidyl-N-methylethanolamine N-methyltransferase 3535050 4600220 Noca_3328 Nocardioides sp. JS614 phosphatidylethanolamine N-methyltransferase/phosphatidyl-N-methylethanolamine N-methyltransferase YP_924517.1 3534418 D 196162 CDS YP_924518.1 119717553 4600221 3535186..3535590 1 NC_008699.1 PFAM: DoxX family protein; KEGG: mxa:MXAN_6975 DoxX family protein; DoxX family protein 3535590 4600221 Noca_3329 Nocardioides sp. JS614 DoxX family protein YP_924518.1 3535186 D 196162 CDS YP_924519.1 119717554 4600222 complement(3535618..3537567) 1 NC_008699.1 KEGG: sru:SRU_0851 hypothetical protein; hypothetical protein 3537567 4600222 Noca_3330 Nocardioides sp. JS614 hypothetical protein YP_924519.1 3535618 R 196162 CDS YP_924520.1 119717555 4600223 3537773..3538273 1 NC_008699.1 SMART: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 3538273 4600223 Noca_3331 Nocardioides sp. JS614 helix-turn-helix domain-containing protein YP_924520.1 3537773 D 196162 CDS YP_924521.1 119717556 4600224 3538273..3538836 1 NC_008699.1 KEGG: mbo:Mb0764c hypothetical protein; hypothetical protein 3538836 4600224 Noca_3332 Nocardioides sp. JS614 hypothetical protein YP_924521.1 3538273 D 196162 CDS YP_924522.1 119717557 4600225 3538850..3539398 1 NC_008699.1 KEGG: mmc:Mmcs_4828 phage integrase; hypothetical protein 3539398 4600225 Noca_3333 Nocardioides sp. JS614 hypothetical protein YP_924522.1 3538850 D 196162 CDS YP_924523.1 119717558 4600226 3539395..3539598 1 NC_008699.1 KEGG: cdi:DIP0182 putative phage integrase; hypothetical protein 3539598 4600226 Noca_3334 Nocardioides sp. JS614 hypothetical protein YP_924523.1 3539395 D 196162 CDS YP_924524.1 119717559 4600229 complement(3539943..3540935) 1 NC_008699.1 PFAM: Abortive infection protein; KEGG: pac:PPA1365 conserved protein YyaK; abortive infection protein 3540935 4600229 Noca_3335 Nocardioides sp. JS614 abortive infection protein YP_924524.1 3539943 R 196162 CDS YP_924525.1 119717560 4600230 complement(3540928..3542403) 1 NC_008699.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 3542403 gltX 4600230 gltX Nocardioides sp. JS614 glutamyl-tRNA synthetase YP_924525.1 3540928 R 196162 CDS YP_924526.1 119717561 4600231 complement(3542411..3543220) 1 NC_008699.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: pac:PPA1366 putative 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; 5-carboxymethyl-2-hydroxymuconate delta-isomerase 3543220 4600231 Noca_3337 Nocardioides sp. JS614 5-carboxymethyl-2-hydroxymuconate delta-isomerase YP_924526.1 3542411 R 196162 CDS YP_924527.1 119717562 4600232 complement(3543251..3545620) 1 NC_008699.1 PFAM: peptidase S45, penicillin amidase; KEGG: dra:DRA0255 aculeacin A acylase; peptidase S45, penicillin amidase 3545620 4600232 Noca_3338 Nocardioides sp. JS614 peptidase S45, penicillin amidase YP_924527.1 3543251 R 196162 CDS YP_924528.1 119717563 4600233 complement(3545684..3546286) 1 NC_008699.1 PFAM: MOSC domain containing protein; KEGG: rpe:RPE_1637 MOSC domain containing protein; MOSC domain-containing protein 3546286 4600233 Noca_3339 Nocardioides sp. JS614 MOSC domain-containing protein YP_924528.1 3545684 R 196162 CDS YP_924529.1 119717564 4600234 3546320..3547231 1 NC_008699.1 KEGG: nfa:nfa25070 hypothetical protein; hypothetical protein 3547231 4600234 Noca_3340 Nocardioides sp. JS614 hypothetical protein YP_924529.1 3546320 D 196162 CDS YP_924530.1 119717565 4600235 complement(3547236..3547703) 1 NC_008699.1 PFAM: CoA-binding domain protein; KEGG: sus:Acid_0397 CoA-binding protein; CoA-binding domain-containing protein 3547703 4600235 Noca_3341 Nocardioides sp. JS614 CoA-binding domain-containing protein YP_924530.1 3547236 R 196162 CDS YP_924531.1 119717566 4598740 3548099..3548383 1 NC_008699.1 PFAM: Excalibur domain protein; KEGG: bld:BLi04157 YhjA; Excalibur domain-containing protein 3548383 4598740 Noca_3342 Nocardioides sp. JS614 Excalibur domain-containing protein YP_924531.1 3548099 D 196162 CDS YP_924532.1 119717567 4598741 3548431..3549033 1 NC_008699.1 PFAM: dienelactone hydrolase; KEGG: ret:RHE_CH02612 hypothetical protein; dienelactone hydrolase 3549033 4598741 Noca_3343 Nocardioides sp. JS614 dienelactone hydrolase YP_924532.1 3548431 D 196162 CDS YP_924533.1 119717568 4598742 3549040..3549561 1 NC_008699.1 KEGG: bcn:Bcen_5567 hypothetical protein; hypothetical protein 3549561 4598742 Noca_3344 Nocardioides sp. JS614 hypothetical protein YP_924533.1 3549040 D 196162 CDS YP_924534.1 119717569 4598743 3549567..3550133 1 NC_008699.1 PFAM: peptidase M23B; KEGG: syf:Synpcc7942_0344 probable peptidase; peptidase M23B 3550133 4598743 Noca_3345 Nocardioides sp. JS614 peptidase M23B YP_924534.1 3549567 D 196162 CDS YP_924535.1 119717570 4598744 3550130..3550399 1 NC_008699.1 KEGG: dra:DR0234 hypothetical protein; hypothetical protein 3550399 4598744 Noca_3346 Nocardioides sp. JS614 hypothetical protein YP_924535.1 3550130 D 196162 CDS YP_924536.1 119717571 4598745 3550396..3550977 1 NC_008699.1 PFAM: pentapeptide repeat protein; KEGG: fal:FRAAL1624 hypothetical protein; putative pentapeptide repeat domain; pentapeptide repeat-containing protein 3550977 4598745 Noca_3347 Nocardioides sp. JS614 pentapeptide repeat-containing protein YP_924536.1 3550396 D 196162 CDS YP_924537.1 119717572 4598746 complement(3550987..3551544) 1 NC_008699.1 PFAM: regulatory protein, TetR; Tetracyclin repressor domain protein; KEGG: mmc:Mmcs_3074 transcriptional regulator, TetR family; TetR family transcriptional regulator 3551544 4598746 Noca_3348 Nocardioides sp. JS614 TetR family transcriptional regulator YP_924537.1 3550987 R 196162 CDS YP_924538.1 119717573 4598747 3551662..3552285 1 NC_008699.1 PFAM: BioY protein; KEGG: cef:CE1851 putative biotin synthase; BioY protein 3552285 4598747 Noca_3349 Nocardioides sp. JS614 BioY protein YP_924538.1 3551662 D 196162 CDS YP_924539.1 119717574 4598748 3552291..3552983 1 NC_008699.1 PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: cjk:jk1119 ABC-type cobalt transport system ATPase component; ABC transporter-like protein 3552983 4598748 Noca_3350 Nocardioides sp. JS614 ABC transporter-like protein YP_924539.1 3552291 D 196162 CDS YP_924540.1 119717575 4598749 3552980..3553594 1 NC_008699.1 PFAM: cobalt transport protein; KEGG: rha:RHA1_ro05259 hypothetical protein; cobalt transport protein 3553594 4598749 Noca_3351 Nocardioides sp. JS614 cobalt transport protein YP_924540.1 3552980 D 196162 CDS YP_924541.1 119717576 4598750 complement(3553626..3554312) 1 NC_008699.1 KEGG: rha:RHA1_ro04234 possible transcriptional regulator; putative transcriptional regulator 3554312 4598750 Noca_3352 Nocardioides sp. JS614 putative transcriptional regulator YP_924541.1 3553626 R 196162 CDS YP_924542.1 119717577 4598751 3554438..3554878 1 NC_008699.1 KEGG: rha:RHA1_ro04235 possible membrane protein; hypothetical protein 3554878 4598751 Noca_3353 Nocardioides sp. JS614 hypothetical protein YP_924542.1 3554438 D 196162 CDS YP_924543.1 119717578 4598752 3554875..3555534 1 NC_008699.1 PFAM: GTP cyclohydrolase I; KEGG: nfa:nfa31470 putative GTP cyclohydrolase I; GTP cyclohydrolase 3555534 4598752 Noca_3354 Nocardioides sp. JS614 GTP cyclohydrolase YP_924543.1 3554875 D 196162 CDS YP_924544.1 119717579 4598753 3555531..3556709 1 NC_008699.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: sco:SCO7117 ferredoxin reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 3556709 4598753 Noca_3355 Nocardioides sp. JS614 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_924544.1 3555531 D 196162 CDS YP_924545.1 119717580 4598754 complement(3556711..3557367) 1 NC_008699.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: fal:FRAAL2466 putative short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 3557367 4598754 Noca_3356 Nocardioides sp. JS614 short-chain dehydrogenase/reductase SDR YP_924545.1 3556711 R 196162 CDS YP_924546.1 119717581 4598755 complement(3557383..3557904) 1 NC_008699.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mmc:Mmcs_0265 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3557904 4598755 Noca_3357 Nocardioides sp. JS614 N-acetyltransferase GCN5 YP_924546.1 3557383 R 196162 CDS YP_924547.1 119717582 4598756 complement(3557909..3559321) 1 NC_008699.1 PFAM: Amidase; KEGG: tfu:Tfu_2207 amidase; amidase 3559321 4598756 Noca_3358 Nocardioides sp. JS614 amidase YP_924547.1 3557909 R 196162 CDS YP_924548.1 119717583 4598757 complement(3559367..3559918) 1 NC_008699.1 PFAM: NADPH-dependent FMN reductase; KEGG: sma:SAV7045 reductase; NADPH-dependent FMN reductase 3559918 4598757 Noca_3359 Nocardioides sp. JS614 NADPH-dependent FMN reductase YP_924548.1 3559367 R 196162 CDS YP_924549.1 119717584 4598758 3559985..3560611 1 NC_008699.1 PFAM: regulatory protein, TetR; KEGG: rha:RHA1_ro06435 possible transcriptional regulator, TetR family; regulatory protein TetR 3560611 4598758 Noca_3360 Nocardioides sp. JS614 regulatory protein TetR YP_924549.1 3559985 D 196162 CDS YP_924550.1 119717585 4598759 complement(3560696..3561115) 1 NC_008699.1 hypothetical protein 3561115 4598759 Noca_3361 Nocardioides sp. JS614 hypothetical protein YP_924550.1 3560696 R 196162 CDS YP_924551.1 119717586 4598760 complement(3561135..3562556) 1 NC_008699.1 PFAM: aminotransferase, class V; Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: sth:STH3269 arginine/lysine/ornithine decarboxylase; Orn/Lys/Arg decarboxylase, major region 3562556 4598760 Noca_3362 Nocardioides sp. JS614 Orn/Lys/Arg decarboxylase, major region YP_924551.1 3561135 R 196162 CDS YP_924552.1 119717587 4598761 complement(3562546..3563673) 1 NC_008699.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: sru:SRU_2799 acetylornithine deacetylase; acetylornithine deacetylase 3563673 4598761 Noca_3363 Nocardioides sp. JS614 acetylornithine deacetylase YP_924552.1 3562546 R 196162 CDS YP_924553.1 119717588 4598762 complement(3563696..3565288) 1 NC_008699.1 KEGG: sco:SCO5529 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; putative alpha-isopropylmalate/homocitrate synthase family transferase 3565288 4598762 Noca_3364 Nocardioides sp. JS614 putative alpha-isopropylmalate/homocitrate synthase family transferase YP_924553.1 3563696 R 196162 CDS YP_924554.1 119717589 4598763 complement(3565382..3567019) 1 NC_008699.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: tfu:Tfu_0592 tyrosine protein kinase:serine/threonine protein kinase; protein kinase 3567019 4598763 Noca_3365 Nocardioides sp. JS614 protein kinase YP_924554.1 3565382 R 196162 CDS YP_924555.1 119717590 4598765 complement(3567527..3568600) 1 NC_008699.1 KEGG: xcb:XC_3380 branched-chain amino acid aminotransferase; TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase, class IV; branched chain amino acid aminotransferase 3568600 4598765 Noca_3367 Nocardioides sp. JS614 branched chain amino acid aminotransferase YP_924555.1 3567527 R 196162 CDS YP_924556.1 119717591 4598766 complement(3568764..3570200) 1 NC_008699.1 PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: sco:SCO5522 3-isopropylmalate dehydrogenase; 3-isopropylmalate dehydrogenase 3570200 4598766 Noca_3368 Nocardioides sp. JS614 3-isopropylmalate dehydrogenase YP_924556.1 3568764 R 196162 CDS YP_924557.1 119717592 4598767 3570376..3570942 1 NC_008699.1 KEGG: dra:DR0603 cytidine/deoxycytidylate deaminase/NUDIX/methyltransferase domains protein; cytidine/deoxycytidylate deaminase/NUDIX/methyltransferase domain-containing protein 3570942 4598767 Noca_3369 Nocardioides sp. JS614 cytidine/deoxycytidylate deaminase/NUDIX/methyltransferase domain-containing protein YP_924557.1 3570376 D 196162 CDS YP_924558.1 119717593 4598768 complement(3571248..3571850) 1 NC_008699.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mmc:Mmcs_1188 methyltransferase type 11; type 12 methyltransferase 3571850 4598768 Noca_3370 Nocardioides sp. JS614 type 12 methyltransferase YP_924558.1 3571248 R 196162 CDS YP_924559.1 119717594 4598769 complement(3571889..3572374) 1 NC_008699.1 KEGG: nfa:nfa32370 hypothetical protein; hypothetical protein 3572374 4598769 Noca_3371 Nocardioides sp. JS614 hypothetical protein YP_924559.1 3571889 R 196162 CDS YP_924560.1 119717595 4598770 complement(3572383..3573069) 1 NC_008699.1 PFAM: protein of unknown function DUF161; KEGG: sco:SCO1418 integral membrane protein; hypothetical protein 3573069 4598770 Noca_3372 Nocardioides sp. JS614 hypothetical protein YP_924560.1 3572383 R 196162 CDS YP_924561.1 119717596 4598771 3573131..3574567 1 NC_008699.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: rha:RHA1_ro05556 transcriptional regulator/aminotransferase; GntR family transcriptional regulator 3574567 4598771 Noca_3373 Nocardioides sp. JS614 GntR family transcriptional regulator YP_924561.1 3573131 D 196162 CDS YP_924562.1 119717597 4598772 complement(3574585..3575064) 1 NC_008699.1 PFAM: regulatory protein, MarR; KEGG: fal:FRAAL1706 putative MarR-family transcriptional regulator; MarR family transcriptional regulator 3575064 4598772 Noca_3374 Nocardioides sp. JS614 MarR family transcriptional regulator YP_924562.1 3574585 R 196162 CDS YP_924563.1 119717598 4598773 complement(3575057..3575983) 1 NC_008699.1 PFAM: luciferase family protein; KEGG: rxy:Rxyl_3088 luciferase-like protein; luciferase family protein 3575983 4598773 Noca_3375 Nocardioides sp. JS614 luciferase family protein YP_924563.1 3575057 R 196162 CDS YP_924564.1 119717599 4598774 complement(3575980..3578160) 1 NC_008699.1 PFAM: FAD linked oxidase domain protein; KEGG: rxy:Rxyl_3087 FAD linked oxidase-like protein; FAD linked oxidase domain-containing protein 3578160 4598774 Noca_3376 Nocardioides sp. JS614 FAD linked oxidase domain-containing protein YP_924564.1 3575980 R 196162 CDS YP_924565.1 119717600 4598775 3578283..3579269 1 NC_008699.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: mpa:MAP3628c hypothetical protein; 2-nitropropane dioxygenase 3579269 4598775 Noca_3377 Nocardioides sp. JS614 2-nitropropane dioxygenase YP_924565.1 3578283 D 196162 CDS YP_924566.1 119717601 4598776 complement(3579593..3580930) 1 NC_008699.1 PFAM: purine catabolism PurC domain protein; KEGG: mmc:Mmcs_5287 transcriptional regulator, CdaR; purine catabolism PurC domain-containing protein 3580930 4598776 Noca_3378 Nocardioides sp. JS614 purine catabolism PurC domain-containing protein YP_924566.1 3579593 R 196162 CDS YP_924567.1 119717602 4598777 3581120..3582637 1 NC_008699.1 PFAM: amino acid permease-associated region; KEGG: mmc:Mmcs_5286 amino acid permease-associated region; amino acid permease-associated protein 3582637 4598777 Noca_3379 Nocardioides sp. JS614 amino acid permease-associated protein YP_924567.1 3581120 D 196162 CDS YP_924568.1 119717603 4598178 3582634..3583356 1 NC_008699.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: mmc:Mmcs_5285 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3583356 4598178 Noca_3380 Nocardioides sp. JS614 short-chain dehydrogenase/reductase SDR YP_924568.1 3582634 D 196162 CDS YP_924569.1 119717604 4598179 3583356..3584129 1 NC_008699.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: mmc:Mmcs_5284 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3584129 4598179 Noca_3381 Nocardioides sp. JS614 short-chain dehydrogenase/reductase SDR YP_924569.1 3583356 D 196162 CDS YP_924570.1 119717605 4598180 3584182..3585147 1 NC_008699.1 TIGRFAM: putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: mmc:Mmcs_5283 agmatinase, putative; agmatinase 3585147 4598180 Noca_3382 Nocardioides sp. JS614 agmatinase YP_924570.1 3584182 D 196162 CDS YP_924571.1 119717606 4598181 3585144..3586043 1 NC_008699.1 PFAM: polysaccharide deacetylase; KEGG: mmc:Mmcs_2257 polysaccharide deacetylase; polysaccharide deacetylase 3586043 4598181 Noca_3383 Nocardioides sp. JS614 polysaccharide deacetylase YP_924571.1 3585144 D 196162 CDS YP_924572.1 119717607 4598182 complement(3586037..3587932) 1 NC_008699.1 PFAM: glycoside hydrolase, family 3 domain protein; KEGG: rxy:Rxyl_0629 beta-N-acetylhexosaminidase; glycoside hydrolase family 3 protein 3587932 4598182 Noca_3384 Nocardioides sp. JS614 glycoside hydrolase family 3 protein YP_924572.1 3586037 R 196162 CDS YP_924573.1 119717608 4598183 complement(3588017..3589627) 1 NC_008699.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 3589627 4598183 Noca_3385 Nocardioides sp. JS614 D-3-phosphoglycerate dehydrogenase YP_924573.1 3588017 R 196162 CDS YP_924574.1 119717609 4598184 3589841..3591391 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV1689 ABC transporter ATP-binding protein; ABC transporter-like protein 3591391 4598184 Noca_3386 Nocardioides sp. JS614 ABC transporter-like protein YP_924574.1 3589841 D 196162 CDS YP_924575.1 119717610 4598185 complement(3591395..3591769) 1 NC_008699.1 KEGG: lxx:Lxx16280 putative iron-dependent peroxidase; putative iron-dependent peroxidase 3591769 4598185 Noca_3387 Nocardioides sp. JS614 putative iron-dependent peroxidase YP_924575.1 3591395 R 196162 CDS YP_924576.1 119717611 4598186 complement(3591793..3592677) 1 NC_008699.1 PFAM: iron permease FTR1; KEGG: sco:SCO2277 high-affinity iron transporter; iron permease FTR1 3592677 4598186 Noca_3388 Nocardioides sp. JS614 iron permease FTR1 YP_924576.1 3591793 R 196162 CDS YP_924577.1 119717612 4598187 complement(3592731..3593438) 1 NC_008699.1 PFAM: DSBA oxidoreductase; KEGG: sco:SCO1869 hypothetical protein; DSBA oxidoreductase 3593438 4598187 Noca_3389 Nocardioides sp. JS614 DSBA oxidoreductase YP_924577.1 3592731 R 196162 CDS YP_924578.1 119717613 4598188 complement(3593495..3594523) 1 NC_008699.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 3594523 4598188 Noca_3390 Nocardioides sp. JS614 ketol-acid reductoisomerase YP_924578.1 3593495 R 196162 CDS YP_924579.1 119717614 4598189 complement(3594569..3595123) 1 NC_008699.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 3595123 ilvH 4598189 ilvH Nocardioides sp. JS614 acetolactate synthase 3 regulatory subunit YP_924579.1 3594569 R 196162 CDS YP_924580.1 119717615 4598190 complement(3595120..3596877) 1 NC_008699.1 acetolactate synthase large subunit; catalyzes the formation of 2-acetolactate from pyruvate; acetolactate synthase 1 catalytic subunit 3596877 4598190 Noca_3392 Nocardioides sp. JS614 acetolactate synthase 1 catalytic subunit YP_924580.1 3595120 R 196162 CDS YP_924581.1 119717616 4598191 complement(3597102..3597776) 1 NC_008699.1 PFAM: transcriptional coactivator/pterin dehydratase; KEGG: cef:CE0476 putative pterin-4-alpha-carbinolamine dehydratase; pterin-4-alpha-carbinolamine dehydratase 3597776 4598191 Noca_3393 Nocardioides sp. JS614 pterin-4-alpha-carbinolamine dehydratase YP_924581.1 3597102 R 196162 CDS YP_924582.1 119717617 4598192 complement(3597773..3598189) 1 NC_008699.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pol:Bpro_0156 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 3598189 4598192 Noca_3394 Nocardioides sp. JS614 glyoxalase/bleomycin resistance protein/dioxygenase YP_924582.1 3597773 R 196162 CDS YP_924583.1 119717618 4598193 3598226..3598573 1 NC_008699.1 KEGG: rha:RHA1_ro04002 hypothetical protein; hypothetical protein 3598573 4598193 Noca_3395 Nocardioides sp. JS614 hypothetical protein YP_924583.1 3598226 D 196162 CDS YP_924584.1 119717619 4598194 complement(3598679..3599884) 1 NC_008699.1 PFAM: aminotransferase, class V; KEGG: rha:RHA1_ro01800 kynureninase; kynureninase 3599884 4598194 Noca_3396 Nocardioides sp. JS614 kynureninase YP_924584.1 3598679 R 196162 CDS YP_924585.1 119717620 4598195 complement(3599881..3601278) 1 NC_008699.1 TIGRFAM: xylulokinase; PFAM: carbohydrate kinase, FGGY; KEGG: rha:RHA1_ro02812 probable xylulokinase; xylulokinase 3601278 4598195 Noca_3397 Nocardioides sp. JS614 xylulokinase YP_924585.1 3599881 R 196162 CDS YP_924586.1 119717621 4598196 3601340..3602224 1 NC_008699.1 PFAM: Aldose 1-epimerase; KEGG: tfu:Tfu_1083 putative aldose-1-epimerase; aldose 1-epimerase 3602224 4598196 Noca_3398 Nocardioides sp. JS614 aldose 1-epimerase YP_924586.1 3601340 D 196162 CDS YP_924587.1 119717622 4598198 complement(3603372..3605057) 1 NC_008699.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 3605057 4598198 Noca_3400 Nocardioides sp. JS614 thiamine biosynthesis protein ThiC YP_924587.1 3603372 R 196162 CDS YP_924588.1 119717623 4598199 complement(3605057..3605869) 1 NC_008699.1 KEGG: rme:Rmet_0169 phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; phosphomethylpyrimidine kinase 3605869 4598199 Noca_3401 Nocardioides sp. JS614 phosphomethylpyrimidine kinase YP_924588.1 3605057 R 196162 CDS YP_924589.1 119717624 4598200 complement(3605866..3606459) 1 NC_008699.1 PFAM: thiamine monophosphate synthase; KEGG: pca:Pcar_0607 thiamine-phosphate pyrophosphorylase; thiamine monophosphate synthase 3606459 4598200 Noca_3402 Nocardioides sp. JS614 thiamine monophosphate synthase YP_924589.1 3605866 R 196162 CDS YP_924590.1 119717625 4598201 complement(3606456..3607214) 1 NC_008699.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 3607214 thiG 4598201 thiG Nocardioides sp. JS614 thiazole synthase YP_924590.1 3606456 R 196162 CDS YP_924591.1 119717626 4598202 complement(3607220..3607408) 1 NC_008699.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: sma:SAV6094 thiamine biosynthesis ThiS; thiamine biosynthesis protein ThiS 3607408 4598202 Noca_3404 Nocardioides sp. JS614 thiamine biosynthesis protein ThiS YP_924591.1 3607220 R 196162 CDS YP_924592.1 119717627 4598203 complement(3607405..3608520) 1 NC_008699.1 TIGRFAM: glycine oxidase ThiO; PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sco:SCO2107 putative oxidoreductase; glycine oxidase ThiO 3608520 4598203 Noca_3405 Nocardioides sp. JS614 glycine oxidase ThiO YP_924592.1 3607405 R 196162 CDS YP_924593.1 119717628 4598204 complement(3608517..3609128) 1 NC_008699.1 KEGG: dde:Dde_1379 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase 3609128 4598204 Noca_3406 Nocardioides sp. JS614 thiamine-phosphate pyrophosphorylase YP_924593.1 3608517 R 196162 CDS YP_924594.1 119717629 4598205 complement(3609492..3610160) 1 NC_008699.1 TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase; KEGG: fra:Francci3_2878 Cob(II)yrinic acid a,c-diamide reductase; cob(II)yrinic acid a,c-diamide reductase 3610160 4598205 Noca_3407 Nocardioides sp. JS614 cob(II)yrinic acid a,c-diamide reductase YP_924594.1 3609492 R 196162 CDS YP_924595.1 119717630 4598206 complement(3610160..3610933) 1 NC_008699.1 TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: nfa:nfa50340 putative methyltransferase; precorrin-4 C(11)-methyltransferase 3610933 4598206 Noca_3408 Nocardioides sp. JS614 precorrin-4 C(11)-methyltransferase YP_924595.1 3610160 R 196162 CDS YP_924596.1 119717631 4598207 complement(3610930..3612510) 1 NC_008699.1 TIGRFAM: precorrin-3B C17-methyltransferase; precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: tfu:Tfu_0316 precorrin-3B C17-methyltransferase region:precorrin-2 C20-methyltransferase; precorrin-3 methyltransferase / precorrin-2 C20-methyltransferase 3612510 4598207 Noca_3409 Nocardioides sp. JS614 precorrin-3 methyltransferase / precorrin-2 C20-methyltransferase YP_924596.1 3610930 R 196162 CDS YP_924597.1 119717632 4598208 complement(3612507..3612719) 1 NC_008699.1 hypothetical protein 3612719 4598208 Noca_3410 Nocardioides sp. JS614 hypothetical protein YP_924597.1 3612507 R 196162 CDS YP_924598.1 119717633 4598209 complement(3612716..3613339) 1 NC_008699.1 KEGG: tfu:Tfu_0318 cobalamin biosynthesis protein CobG, precorrin-3B synthase; cobalamin biosynthesis protein CobG 3613339 4598209 Noca_3411 Nocardioides sp. JS614 cobalamin biosynthesis protein CobG YP_924598.1 3612716 R 196162 CDS YP_924599.1 119717634 4598210 complement(3613336..3614181) 1 NC_008699.1 TIGRFAM: dethiobiotin synthase; KEGG: rha:RHA1_ro01053 dethiobiotin synthetase; dethiobiotin synthase 3614181 4598210 Noca_3412 Nocardioides sp. JS614 dethiobiotin synthase YP_924599.1 3613336 R 196162 CDS YP_924600.1 119717635 4598211 complement(3614178..3615320) 1 NC_008699.1 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 3615320 4598211 Noca_3413 Nocardioides sp. JS614 8-amino-7-oxononanoate synthase YP_924600.1 3614178 R 196162 CDS YP_924601.1 119717636 4598212 complement(3615434..3616738) 1 NC_008699.1 TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: sco:SCO1245 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 3616738 4598212 Noca_3414 Nocardioides sp. JS614 adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_924601.1 3615434 R 196162 CDS YP_924602.1 119717637 4598213 complement(3616735..3617859) 1 NC_008699.1 catalyzes the formation of biotin from dethiobiotin and sulfur 2 S-adenosyl-L-methionine; biotin synthase 3617859 4598213 Noca_3415 Nocardioides sp. JS614 biotin synthase YP_924602.1 3616735 R 196162 CDS YP_924603.1 119717638 4598214 3618101..3618709 1 NC_008699.1 PFAM: Berberine/berberine domain protein; KEGG: eba:ebA6736 probable FAD/FMN-containing oxidoreductase; berberine/berberine domain-containing protein 3618709 4598214 Noca_3416 Nocardioides sp. JS614 berberine/berberine domain-containing protein YP_924603.1 3618101 D 196162 CDS YP_924604.1 119717639 4598215 3618735..3619493 1 NC_008699.1 PFAM: Asp/Glu racemase; KEGG: dar:Daro_1336 hydantoin racemase; Asp/Glu racemase 3619493 4598215 Noca_3417 Nocardioides sp. JS614 Asp/Glu racemase YP_924604.1 3618735 D 196162 CDS YP_924605.1 119717640 4598216 complement(3620272..3620688) 1 NC_008699.1 hypothetical protein 3620688 4598216 Noca_3418 Nocardioides sp. JS614 hypothetical protein YP_924605.1 3620272 R 196162 CDS YP_924606.1 119717641 4598217 complement(3621708..3623411) 1 NC_008699.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 3623411 4598217 Noca_3419 Nocardioides sp. JS614 dihydroxy-acid dehydratase YP_924606.1 3621708 R 196162 CDS YP_924607.1 119717642 4598218 3623484..3624242 1 NC_008699.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pac:PPA1107 haloacid dehalogenase-like hydrolase; beta-phosphoglucomutase family hydrolase 3624242 4598218 Noca_3420 Nocardioides sp. JS614 beta-phosphoglucomutase family hydrolase YP_924607.1 3623484 D 196162 CDS YP_924608.1 119717643 4597237 3624242..3626818 1 NC_008699.1 PFAM: glycoside hydrolase, family 65 domain protein; glycoside hydrolase family 65, central catalytic; glycoside hydrolase family 65 domain protein; KEGG: pac:PPA1108 trehalose phosphorylase; Kojibiose phosphorylase 3626818 4597237 Noca_3421 Nocardioides sp. JS614 Kojibiose phosphorylase YP_924608.1 3624242 D 196162 CDS YP_924609.1 119717644 4597238 complement(3626712..3627761) 1 NC_008699.1 KEGG: bcz:BCZK2308 hypothetical protein; hypothetical protein 3627761 4597238 Noca_3422 Nocardioides sp. JS614 hypothetical protein YP_924609.1 3626712 R 196162 CDS YP_924610.1 119717645 4597239 complement(3627856..3628353) 1 NC_008699.1 KEGG: nfa:nfa51460 hypothetical protein; hypothetical protein 3628353 4597239 Noca_3423 Nocardioides sp. JS614 hypothetical protein YP_924610.1 3627856 R 196162 CDS YP_924611.1 119717646 4597240 complement(3628358..3629446) 1 NC_008699.1 KEGG: rha:RHA1_ro02402 hypothetical protein; hypothetical protein 3629446 4597240 Noca_3424 Nocardioides sp. JS614 hypothetical protein YP_924611.1 3628358 R 196162 CDS YP_924612.1 119717647 4597241 3629522..3630400 1 NC_008699.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: tfu:Tfu_1994 putative integral membrane protein; hypothetical protein 3630400 4597241 Noca_3425 Nocardioides sp. JS614 hypothetical protein YP_924612.1 3629522 D 196162 CDS YP_924613.1 119717648 4597242 3630511..3630732 1 NC_008699.1 hypothetical protein 3630732 4597242 Noca_3426 Nocardioides sp. JS614 hypothetical protein YP_924613.1 3630511 D 196162 CDS YP_924614.1 119717649 4597243 3630779..3631693 1 NC_008699.1 PFAM: alpha/beta hydrolase fold; KEGG: ade:Adeh_1736 alpha/beta hydrolase fold-1; alpha/beta hydrolase fold protein 3631693 4597243 Noca_3427 Nocardioides sp. JS614 alpha/beta hydrolase fold protein YP_924614.1 3630779 D 196162 CDS YP_924615.1 119717650 4597244 3631695..3632864 1 NC_008699.1 PFAM: NHL repeat containing protein; glucose sorbosone dehydrogenase; KEGG: rha:RHA1_ro02468 possible glucose dehydrogenase; glucose sorbosone dehydrogenase 3632864 4597244 Noca_3428 Nocardioides sp. JS614 glucose sorbosone dehydrogenase YP_924615.1 3631695 D 196162 CDS YP_924616.1 119717651 4597245 complement(3632851..3633672) 1 NC_008699.1 KEGG: sco:SCO2325 integral membrane protein; integral membrane protein 3633672 4597245 Noca_3429 Nocardioides sp. JS614 integral membrane protein YP_924616.1 3632851 R 196162 CDS YP_924617.1 119717652 4597246 complement(3633669..3635261) 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV5847 putative ABC transporter ATP-binding subunit; ABC transporter-like protein 3635261 4597246 Noca_3430 Nocardioides sp. JS614 ABC transporter-like protein YP_924617.1 3633669 R 196162 CDS YP_924618.1 119717653 4597247 complement(3635258..3636382) 1 NC_008699.1 PFAM: cobalt transport protein; KEGG: sma:SAV5848 integral membrane protein; cobalt transport protein 3636382 4597247 Noca_3431 Nocardioides sp. JS614 cobalt transport protein YP_924618.1 3635258 R 196162 CDS YP_924619.1 119717654 4597248 complement(3636379..3637242) 1 NC_008699.1 KEGG: syw:SYNW2303 hypothetical protein; hypothetical protein 3637242 4597248 Noca_3432 Nocardioides sp. JS614 hypothetical protein YP_924619.1 3636379 R 196162 CDS YP_924620.1 119717655 4597249 complement(3637244..3638887) 1 NC_008699.1 KEGG: xac:XAC3546 outer membrane protein; hypothetical protein 3638887 4597249 Noca_3433 Nocardioides sp. JS614 hypothetical protein YP_924620.1 3637244 R 196162 CDS YP_924621.1 119717656 4597250 complement(3639206..3640504) 1 NC_008699.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: mtc:MT3905 IS1557, transposase; transposase, IS204/IS1001/IS1096/IS1165 family protein 3640504 4597250 Noca_3434 Nocardioides sp. JS614 transposase, IS204/IS1001/IS1096/IS1165 family protein YP_924621.1 3639206 R 196162 CDS YP_924622.1 119717657 4597251 complement(3640758..3642251) 1 NC_008699.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 3642251 gatB 4597251 gatB Nocardioides sp. JS614 aspartyl/glutamyl-tRNA amidotransferase subunit B YP_924622.1 3640758 R 196162 CDS YP_924623.1 119717658 4597252 complement(3642248..3643768) 1 NC_008699.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 3643768 gatA 4597252 gatA Nocardioides sp. JS614 aspartyl/glutamyl-tRNA amidotransferase subunit A YP_924623.1 3642248 R 196162 CDS YP_924624.1 119717659 4597253 complement(3643768..3644076) 1 NC_008699.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase, C subunit; KEGG: tfu:Tfu_0605 glutamyl-tRNA(Gln) amidotransferase C subunit; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C 3644076 4597253 Noca_3437 Nocardioides sp. JS614 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C YP_924624.1 3643768 R 196162 CDS YP_924625.1 119717660 4597254 3644276..3645613 1 NC_008699.1 PFAM: aminotransferase, class V; KEGG: rha:RHA1_ro04390 probable cysteine desulfurase; cysteine desulfurase 3645613 4597254 Noca_3438 Nocardioides sp. JS614 cysteine desulfurase YP_924625.1 3644276 D 196162 CDS YP_924626.1 119717661 4597255 complement(3645627..3645929) 1 NC_008699.1 hypothetical protein 3645929 4597255 Noca_3439 Nocardioides sp. JS614 hypothetical protein YP_924626.1 3645627 R 196162 CDS YP_924627.1 119717662 4597256 complement(3646044..3648302) 1 NC_008699.1 KEGG: mbo:Mb3039c DNA ligase; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation; SMART: NAD-dependent DNA ligase-like; DNA ligase, NAD-dependent 3648302 4597256 Noca_3440 Nocardioides sp. JS614 DNA ligase, NAD-dependent YP_924627.1 3646044 R 196162 CDS YP_924628.1 119717663 4597257 3648331..3648978 1 NC_008699.1 PFAM: regulatory protein, TetR; KEGG: sco:SCO3167 TetR-family transcriptional regulator; TetR family transcriptional regulator 3648978 4597257 Noca_3441 Nocardioides sp. JS614 TetR family transcriptional regulator YP_924628.1 3648331 D 196162 CDS YP_924629.1 119717664 4597258 3648978..3650570 1 NC_008699.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV3887 transmembrane efflux protein; EmrB/QacA family drug resistance transporter 3650570 4597258 Noca_3442 Nocardioides sp. JS614 EmrB/QacA family drug resistance transporter YP_924629.1 3648978 D 196162 CDS YP_924630.1 119717665 4597259 complement(3650649..3651185) 1 NC_008699.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: aba:Acid345_2316 peptidase C56, PfpI; PfpI family intracellular peptidase 3651185 4597259 Noca_3443 Nocardioides sp. JS614 PfpI family intracellular peptidase YP_924630.1 3650649 R 196162 CDS YP_924631.1 119717666 4597260 complement(3651228..3652244) 1 NC_008699.1 PFAM: Methionine synthase, vitamin-B12 independent; KEGG: tfu:Tfu_0602 hypothetical protein; methionine synthase, vitamin-B12 independent 3652244 4597260 Noca_3444 Nocardioides sp. JS614 methionine synthase, vitamin-B12 independent YP_924631.1 3651228 R 196162 CDS YP_924632.1 119717667 4597261 complement(3652241..3653341) 1 NC_008699.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 3653341 mnmA 4597261 mnmA Nocardioides sp. JS614 tRNA-specific 2-thiouridylase MnmA YP_924632.1 3652241 R 196162 CDS YP_924633.1 119717668 4597262 complement(3653349..3654548) 1 NC_008699.1 PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sma:SAV2756 putative pyridoxal-phosphate-dependent aminotransferase; class V aminotransferase 3654548 4597262 Noca_3446 Nocardioides sp. JS614 class V aminotransferase YP_924633.1 3653349 R 196162 CDS YP_924634.1 119717669 4597263 complement(3654628..3655230) 1 NC_008699.1 KEGG: sco:SCO3789 integral membrane protein; integral membrane protein 3655230 4597263 Noca_3447 Nocardioides sp. JS614 integral membrane protein YP_924634.1 3654628 R 196162 CDS YP_924635.1 119717670 4597264 complement(3655266..3656381) 1 NC_008699.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 3656381 4597264 Noca_3448 Nocardioides sp. JS614 gamma-glutamyl kinase YP_924635.1 3655266 R 196162 CDS YP_924636.1 119717671 4597265 complement(3656400..3657950) 1 NC_008699.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 3657950 obgE 4597265 obgE Nocardioides sp. JS614 GTPase ObgE YP_924636.1 3656400 R 196162 CDS YP_924637.1 119717672 4597266 complement(3658048..3658302) 1 NC_008699.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 3658302 rpmA 4597266 rpmA Nocardioides sp. JS614 50S ribosomal protein L27 YP_924637.1 3658048 R 196162 CDS YP_924638.1 119717673 4597267 complement(3658334..3658642) 1 NC_008699.1 PFAM: ribosomal protein L21; KEGG: pac:PPA0827 50S ribosomal protein L21; 50S ribosomal protein L21 3658642 rplU 4597267 rplU Nocardioides sp. JS614 50S ribosomal protein L21 YP_924638.1 3658334 R 196162 CDS YP_924639.1 119717674 4597268 complement(3658808..3662020) 1 NC_008699.1 TIGRFAM: ribonuclease, Rne/Rng family; SMART: RNA binding S1 domain protein; KEGG: sma:SAV5465 hypothetical protein; ribonuclease G 3662020 4597268 Noca_3452 Nocardioides sp. JS614 ribonuclease G YP_924639.1 3658808 R 196162 CDS YP_924640.1 119717675 4597269 complement(3662369..3663079) 1 NC_008699.1 KEGG: sma:SAV5464 hypothetical protein; hypothetical protein 3663079 4597269 Noca_3453 Nocardioides sp. JS614 hypothetical protein YP_924640.1 3662369 R 196162 CDS YP_924641.1 119717676 4597270 complement(3663097..3664287) 1 NC_008699.1 KEGG: mmc:Mmcs_2986 hypothetical protein; hypothetical protein 3664287 4597270 Noca_3454 Nocardioides sp. JS614 hypothetical protein YP_924641.1 3663097 R 196162 CDS YP_924642.1 119717677 4597271 3664434..3665543 1 NC_008699.1 PFAM: major facilitator superfamily MFS_1; KEGG: tfu:Tfu_1375 putative integral membrane transporter; major facilitator transporter 3665543 4597271 Noca_3455 Nocardioides sp. JS614 major facilitator transporter YP_924642.1 3664434 D 196162 CDS YP_924643.1 119717678 4596237 3665660..3665986 1 NC_008699.1 hypothetical protein 3665986 4596237 Noca_3456 Nocardioides sp. JS614 hypothetical protein YP_924643.1 3665660 D 196162 CDS YP_924644.1 119717679 4596238 3665976..3666206 1 NC_008699.1 PFAM: CopG domain protein DNA-binding domain protein; CopG/DNA-binding domain-containing protein 3666206 4596238 Noca_3457 Nocardioides sp. JS614 CopG/DNA-binding domain-containing protein YP_924644.1 3665976 D 196162 CDS YP_924645.1 119717680 4596239 3666203..3666850 1 NC_008699.1 PFAM: NUDIX hydrolase; KEGG: mmc:Mmcs_4021 NUDIX hydrolase; NUDIX hydrolase 3666850 4596239 Noca_3458 Nocardioides sp. JS614 NUDIX hydrolase YP_924645.1 3666203 D 196162 CDS YP_924646.1 119717681 4596240 complement(3666763..3668754) 1 NC_008699.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sma:SAV5461 hypothetical protein; radical SAM domain-containing protein 3668754 4596240 Noca_3459 Nocardioides sp. JS614 radical SAM domain-containing protein YP_924646.1 3666763 R 196162 CDS YP_924647.1 119717682 4596241 complement(3668841..3669041) 1 NC_008699.1 hypothetical protein 3669041 4596241 Noca_3460 Nocardioides sp. JS614 hypothetical protein YP_924647.1 3668841 R 196162 CDS YP_924648.1 119717683 4596242 complement(3669072..3670313) 1 NC_008699.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: fal:FRAAL1920 rod shape-determining membrane protein; cell elongation; rod shape-determining protein RodA 3670313 4596242 Noca_3461 Nocardioides sp. JS614 rod shape-determining protein RodA YP_924648.1 3669072 R 196162 CDS YP_924649.1 119717684 4596243 complement(3670315..3672441) 1 NC_008699.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: sma:SAV5458 penicillin-binding protein; peptidoglycan glycosyltransferase 3672441 4596243 Noca_3462 Nocardioides sp. JS614 peptidoglycan glycosyltransferase YP_924649.1 3670315 R 196162 CDS YP_924650.1 119717685 4596244 complement(3672458..3672970) 1 NC_008699.1 KEGG: sco:SCO2609 rod shape-determining protein; rod shape-determining protein 3672970 4596244 Noca_3463 Nocardioides sp. JS614 rod shape-determining protein YP_924650.1 3672458 R 196162 CDS YP_924651.1 119717686 4596245 complement(3672967..3673875) 1 NC_008699.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 3673875 4596245 Noca_3464 Nocardioides sp. JS614 rod shape-determining protein MreC YP_924651.1 3672967 R 196162 CDS YP_924652.1 119717687 4596246 complement(3673875..3674903) 1 NC_008699.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 3674903 4596246 Noca_3465 Nocardioides sp. JS614 rod shape-determining protein MreB YP_924652.1 3673875 R 196162 CDS YP_924653.1 119717688 4596247 complement(3675201..3675608) 1 NC_008699.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 3675608 ndk 4596247 ndk Nocardioides sp. JS614 nucleoside diphosphate kinase YP_924653.1 3675201 R 196162 CDS YP_924654.1 119717689 4596248 complement(3675684..3676370) 1 NC_008699.1 KEGG: nfa:nfa50150 hypothetical protein; hypothetical protein 3676370 4596248 Noca_3467 Nocardioides sp. JS614 hypothetical protein YP_924654.1 3675684 R 196162 CDS YP_924655.1 119717690 4596249 3676441..3677766 1 NC_008699.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: nfa:nfa50160 putative transcriptional regulator; GntR family transcriptional regulator 3677766 4596249 Noca_3468 Nocardioides sp. JS614 GntR family transcriptional regulator YP_924655.1 3676441 D 196162 CDS YP_924656.1 119717691 4596250 complement(3677755..3678135) 1 NC_008699.1 KEGG: sma:SAV5453 hypothetical protein; hypothetical protein 3678135 4596250 Noca_3469 Nocardioides sp. JS614 hypothetical protein YP_924656.1 3677755 R 196162 CDS YP_924657.1 119717692 4596251 complement(3678132..3679514) 1 NC_008699.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: sma:SAV5452 putative folylpolyglutamate synthase; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 3679514 4596251 Noca_3470 Nocardioides sp. JS614 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase YP_924657.1 3678132 R 196162 CDS YP_924658.1 119717693 4596252 3679572..3680684 1 NC_008699.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rha:RHA1_ro04873 alcohol dehydrogenase; alcohol dehydrogenase 3680684 4596252 Noca_3471 Nocardioides sp. JS614 alcohol dehydrogenase YP_924658.1 3679572 D 196162 CDS YP_924659.1 119717694 4596253 complement(3680662..3681567) 1 NC_008699.1 PFAM: GCN5-related N-acetyltransferase; KEGG: nfa:nfa46710 putative acetyltransferase; N-acetyltransferase GCN5 3681567 4596253 Noca_3472 Nocardioides sp. JS614 N-acetyltransferase GCN5 YP_924659.1 3680662 R 196162 CDS YP_924660.1 119717695 4596254 3681647..3684262 1 NC_008699.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 3684262 valS 4596254 valS Nocardioides sp. JS614 valyl-tRNA synthetase YP_924660.1 3681647 D 196162 CDS YP_924661.1 119717696 4596255 complement(3684280..3684960) 1 NC_008699.1 KEGG: osa:4347106 Os09g0425200; hypothetical protein 3684960 4596255 Noca_3474 Nocardioides sp. JS614 hypothetical protein YP_924661.1 3684280 R 196162 CDS YP_924662.1 119717697 4595572 complement(3685095..3686375) 1 NC_008699.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 3686375 clpX 4595572 clpX Nocardioides sp. JS614 ATP-dependent protease ATP-binding subunit ClpX YP_924662.1 3685095 R 196162 CDS YP_924663.1 119717698 4595573 complement(3686518..3687138) 1 NC_008699.1 PFAM: peptidase S14, ClpP; KEGG: pac:PPA1572 ATP-dependent Clp protease proteolytic subunit 2; ClpP2 peptidase 3687138 4595573 Noca_3476 Nocardioides sp. JS614 ClpP2 peptidase YP_924663.1 3686518 R 196162 CDS YP_924664.1 119717699 4595574 complement(3687144..3687731) 1 NC_008699.1 PFAM: peptidase S14, ClpP; KEGG: fra:Francci3_1205 endopeptidase Clp; ClpP1 peptidase 3687731 4595574 Noca_3477 Nocardioides sp. JS614 ClpP1 peptidase YP_924664.1 3687144 R 196162 CDS YP_924665.1 119717700 4595575 complement(3687845..3688327) 1 NC_008699.1 PFAM: cyclase/dehydrase; KEGG: mmc:Mmcs_4470 hypothetical protein; cyclase/dehydrase 3688327 4595575 Noca_3478 Nocardioides sp. JS614 cyclase/dehydrase YP_924665.1 3687845 R 196162 CDS YP_924666.1 119717701 4595576 complement(3688329..3689465) 1 NC_008699.1 PFAM: PGAP1 family protein; KEGG: rha:RHA1_ro05901 hypothetical protein; PGAP1 family protein 3689465 4595576 Noca_3479 Nocardioides sp. JS614 PGAP1 family protein YP_924666.1 3688329 R 196162 CDS YP_924667.1 119717702 4595577 complement(3689517..3690932) 1 NC_008699.1 TIGRFAM: trigger factor; PFAM: peptidylprolyl isomerase, FKBP-type; trigger factor, C-terminal domain protein; trigger factor, N-terminal domain; KEGG: pac:PPA1575 trigger factor (chaperone in protein export); trigger factor 3690932 4595577 Noca_3480 Nocardioides sp. JS614 trigger factor YP_924667.1 3689517 R 196162 CDS YP_924668.1 119717703 4595580 complement(3691274..3692377) 1 NC_008699.1 PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sco:SCO2624 integral membrane protein; stage II sporulation E family protein 3692377 4595580 Noca_3481 Nocardioides sp. JS614 stage II sporulation E family protein YP_924668.1 3691274 R 196162 CDS YP_924669.1 119717704 4595581 complement(3692409..3693257) 1 NC_008699.1 PFAM: Formamidopyrimidine-DNA glycolase; KEGG: sma:SAV5427 putative DNA repair hydrolase; formamidopyrimidine-DNA glycosylase 3693257 4595581 Noca_3482 Nocardioides sp. JS614 formamidopyrimidine-DNA glycosylase YP_924669.1 3692409 R 196162 CDS YP_924670.1 119717705 4595582 complement(3693250..3693738) 1 NC_008699.1 catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity; ribose-5-phosphate isomerase B 3693738 4595582 Noca_3483 Nocardioides sp. JS614 ribose-5-phosphate isomerase B YP_924670.1 3693250 R 196162 CDS YP_924671.1 119717706 4595583 complement(3693752..3694621) 1 NC_008699.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: mmc:Mmcs_0314 alpha/beta hydrolase fold-3; alpha/beta hydrolase domain-containing protein 3694621 4595583 Noca_3484 Nocardioides sp. JS614 alpha/beta hydrolase domain-containing protein YP_924671.1 3693752 R 196162 CDS YP_924672.1 119717707 4595584 3694756..3695898 1 NC_008699.1 KEGG: tfu:Tfu_2606 alanine racemase region; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase 3695898 4595584 Noca_3485 Nocardioides sp. JS614 alanine racemase YP_924672.1 3694756 D 196162 CDS YP_924673.1 119717708 4595585 3695895..3696830 1 NC_008699.1 KEGG: mmc:Mmcs_1929 D-alanine--D-alanine ligase; TIGRFAM: D-alanine--D-alanine ligase; PFAM: ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; protein of unknown function DUF201; D-alanine--D-alanine ligase domain protein; D-alanine--D-alanine ligase 3696830 4595585 Noca_3486 Nocardioides sp. JS614 D-alanine--D-alanine ligase YP_924673.1 3695895 D 196162 CDS YP_924674.1 119717709 4595586 3696842..3698122 1 NC_008699.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: lxx:Lxx14550 two-component system, sensor protein; histidine kinase, dimerisation and phosphoacceptor region 3698122 4595586 Noca_3487 Nocardioides sp. JS614 histidine kinase, dimerisation and phosphoacceptor region YP_924674.1 3696842 D 196162 CDS YP_924675.1 119717710 4595587 3698119..3698808 1 NC_008699.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: lxx:Lxx14540 two-component system, regulatory protein; response regulator receiver 3698808 4595587 Noca_3488 Nocardioides sp. JS614 response regulator receiver YP_924675.1 3698119 D 196162 CDS YP_924676.1 119717711 4595588 complement(3698819..3699358) 1 NC_008699.1 KEGG: sco:SCO3059 phosphoribosylaminoimidazole carboxylase catalytic subunit PurE; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit 3699358 4595588 Noca_3489 Nocardioides sp. JS614 phosphoribosylaminoimidazole carboxylase catalytic subunit YP_924676.1 3698819 R 196162 CDS YP_924677.1 119717712 4595589 complement(3699351..3700550) 1 NC_008699.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 3700550 4595589 Noca_3490 Nocardioides sp. JS614 phosphoribosylaminoimidazole carboxylase ATPase subunit YP_924677.1 3699351 R 196162 CDS YP_924678.1 119717713 4595590 complement(3700574..3701002) 1 NC_008699.1 PFAM: transcriptional regulator domain protein; KEGG: tfu:Tfu_2549 response regulator receiver; transcriptional regulator domain-containing protein 3701002 4595590 Noca_3491 Nocardioides sp. JS614 transcriptional regulator domain-containing protein YP_924678.1 3700574 R 196162 CDS YP_924679.1 119717714 4595591 complement(3701117..3702124) 1 NC_008699.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: sma:SAV3329 putative adenylate cyclase; adenylate cyclase 3702124 4595591 Noca_3492 Nocardioides sp. JS614 adenylate cyclase YP_924679.1 3701117 R 196162 CDS YP_924680.1 119717715 4595592 complement(3702111..3702611) 1 NC_008699.1 PFAM: membrane-flanked domain; KEGG: mpa:MAP3396c hypothetical protein; membrane-flanked domain-containing protein 3702611 4595592 Noca_3493 Nocardioides sp. JS614 membrane-flanked domain-containing protein YP_924680.1 3702111 R 196162 CDS YP_924681.1 119717716 4595593 complement(3702624..3703415) 1 NC_008699.1 TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; KEGG: sco:SCO4927 biotin apo-protein ligase; biotin--acetyl-CoA-carboxylase ligase 3703415 4595593 Noca_3494 Nocardioides sp. JS614 biotin--acetyl-CoA-carboxylase ligase YP_924681.1 3702624 R 196162 CDS YP_924682.1 119717717 4595594 3703487..3705109 1 NC_008699.1 PFAM: carboxyl transferase; KEGG: sco:SCO4926 propionyl-CoA carboxylase complex B subunit; carboxyl transferase 3705109 4595594 Noca_3495 Nocardioides sp. JS614 carboxyl transferase YP_924682.1 3703487 D 196162 CDS YP_924683.1 119717718 4595595 3705265..3705519 1 NC_008699.1 KEGG: fal:FRAAL1211 hypothetical protein; hypothetical protein 3705519 4595595 Noca_3496 Nocardioides sp. JS614 hypothetical protein YP_924683.1 3705265 D 196162 CDS YP_924684.1 119717719 4595596 3705691..3707181 1 NC_008699.1 PFAM: glycosyl transferase, family 2; KEGG: bcl:ABC2648 hypothetical protein; glycosyl transferase family protein 3707181 4595596 Noca_3497 Nocardioides sp. JS614 glycosyl transferase family protein YP_924684.1 3705691 D 196162 CDS YP_924685.1 119717720 4595597 3707212..3707934 1 NC_008699.1 hypothetical protein 3707934 4595597 Noca_3498 Nocardioides sp. JS614 hypothetical protein YP_924685.1 3707212 D 196162 CDS YP_924686.1 119717721 4595598 3708068..3708421 1 NC_008699.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: mmc:Mmcs_2855 protein of unknown function DUF222; HNH endonuclease 3708421 4595598 Noca_3499 Nocardioides sp. JS614 HNH endonuclease YP_924686.1 3708068 D 196162 CDS YP_924687.1 119717722 4595599 complement(3708480..3709550) 1 NC_008699.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cjk:jk1635 response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; response regulator receiver 3709550 4595599 Noca_3500 Nocardioides sp. JS614 response regulator receiver YP_924687.1 3708480 R 196162 CDS YP_924688.1 119717723 4595600 complement(3709635..3710675) 1 NC_008699.1 PFAM: glycoside hydrolase, family 6; KEGG: mtc:MT0067 cellulase; cellulase 3710675 4595600 Noca_3501 Nocardioides sp. JS614 cellulase YP_924688.1 3709635 R 196162 CDS YP_924689.1 119717724 4595601 complement(3710699..3712123) 1 NC_008699.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro06636 multidrug resistance transporter, MFS superfamily; EmrB/QacA family drug resistance transporter 3712123 4595601 Noca_3502 Nocardioides sp. JS614 EmrB/QacA family drug resistance transporter YP_924689.1 3710699 R 196162 CDS YP_924690.1 119717725 4595602 3712190..3712792 1 NC_008699.1 PFAM: regulatory protein, TetR; KEGG: rha:RHA1_ro06635 transcriptional regulator, TetR family; TetR family transcriptional regulator 3712792 4595602 Noca_3503 Nocardioides sp. JS614 TetR family transcriptional regulator YP_924690.1 3712190 D 196162 CDS YP_924691.1 119717726 4595603 3712789..3713400 1 NC_008699.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: sco:SCO4923 putative septum formation protein; maf protein 3713400 4595603 Noca_3504 Nocardioides sp. JS614 maf protein YP_924691.1 3712789 D 196162 CDS YP_924692.1 119717727 4595604 complement(3713345..3713923) 1 NC_008699.1 PFAM: GtrA family protein; KEGG: lxx:Lxx04815 conserved putative integral membrane protein; GtrA family protein 3713923 4595604 Noca_3505 Nocardioides sp. JS614 GtrA family protein YP_924692.1 3713345 R 196162 CDS YP_924693.1 119717728 4595605 complement(3713970..3715169) 1 NC_008699.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: mpa:MAP2312c FadE19; butyryl-CoA dehydrogenase 3715169 4595605 Noca_3506 Nocardioides sp. JS614 butyryl-CoA dehydrogenase YP_924693.1 3713970 R 196162 CDS YP_924694.1 119717729 4595606 complement(3715397..3715678) 1 NC_008699.1 PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: fra:Francci3_2007 FAD linked oxidase-like; hypothetical protein 3715678 4595606 Noca_3507 Nocardioides sp. JS614 hypothetical protein YP_924694.1 3715397 R 196162 CDS YP_924695.1 119717730 4595607 complement(3715715..3716317) 1 NC_008699.1 PFAM: regulatory protein, TetR; KEGG: cvi:CV4310 probable transcription regulator, TetR family; regulatory protein TetR 3716317 4595607 Noca_3508 Nocardioides sp. JS614 regulatory protein TetR YP_924695.1 3715715 R 196162 CDS YP_924696.1 119717731 4595608 3716357..3717580 1 NC_008699.1 KEGG: rha:RHA1_ro03056 hypothetical protein; hypothetical protein 3717580 4595608 Noca_3509 Nocardioides sp. JS614 hypothetical protein YP_924696.1 3716357 D 196162 CDS YP_924697.1 119717732 4595609 3717691..3719463 1 NC_008699.1 PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: tfu:Tfu_2557 putative acyl-CoA carboxylase, alpha subunit; carbamoyl-phosphate synthase subunit L 3719463 4595609 Noca_3510 Nocardioides sp. JS614 carbamoyl-phosphate synthase subunit L YP_924697.1 3717691 D 196162 CDS YP_924698.1 119717733 4595693 3719487..3719984 1 NC_008699.1 PFAM: membrane-flanked domain; KEGG: rha:RHA1_ro05943 hypothetical protein; membrane-flanked domain-containing protein 3719984 4595693 Noca_3511 Nocardioides sp. JS614 membrane-flanked domain-containing protein YP_924698.1 3719487 D 196162 CDS YP_924699.1 119717734 4595694 3719981..3721456 1 NC_008699.1 PFAM: membrane-flanked domain; KEGG: rha:RHA1_ro05942 hypothetical protein; membrane-flanked domain-containing protein 3721456 4595694 Noca_3512 Nocardioides sp. JS614 membrane-flanked domain-containing protein YP_924699.1 3719981 D 196162 CDS YP_924700.1 119717735 4595695 3721525..3724911 1 NC_008699.1 biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase 3724911 4595695 Noca_3513 Nocardioides sp. JS614 pyruvate carboxylase YP_924700.1 3721525 D 196162 CDS YP_924701.1 119717736 4595696 3724989..3726074 1 NC_008699.1 TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: rha:RHA1_ro01572 benzoate membrane transport protein BenE; benzoate transporter 3726074 4595696 Noca_3514 Nocardioides sp. JS614 benzoate transporter YP_924701.1 3724989 D 196162 CDS YP_924702.1 119717737 4595697 complement(3726055..3727308) 1 NC_008699.1 TIGRFAM: SpoIID/LytB domain; PFAM: Stage II sporulation D domain protein; KEGG: rha:RHA1_ro04051 probable stage II sporulation protein; SpoIID/LytB domain-containing protein 3727308 4595697 Noca_3515 Nocardioides sp. JS614 SpoIID/LytB domain-containing protein YP_924702.1 3726055 R 196162 CDS YP_924703.1 119717738 4595698 complement(3727351..3728505) 1 NC_008699.1 TIGRFAM: SpoIID/LytB domain; PFAM: Stage II sporulation D domain protein; KEGG: rha:RHA1_ro04051 probable stage II sporulation protein; SpoIID/LytB domain-containing protein 3728505 4595698 Noca_3516 Nocardioides sp. JS614 SpoIID/LytB domain-containing protein YP_924703.1 3727351 R 196162 CDS YP_924704.1 119717739 4595699 complement(3728542..3729939) 1 NC_008699.1 catalyzes the reduction of nonspecific electron acceptors such as 2,6-dimethyl-1,4-benzoquinone and 5-hydroxy-1,4-naphthaquinone; does not have lipoamide dehydrogenase activity; flavoprotein disulfide reductase 3729939 4595699 Noca_3517 Nocardioides sp. JS614 flavoprotein disulfide reductase YP_924704.1 3728542 R 196162 CDS YP_924705.1 119717740 4595700 complement(3729951..3731345) 1 NC_008699.1 E3 component of alpha keto acid dehydrogenase complexes LpdC; forms a homodimer; binds one molecule of FAD monomer; catalyzes NAD+-dependent oxidation of dihydrolipoyl cofactors that are covalently linked to the E2 component; dihydrolipoamide dehydrogenase 3731345 4595700 Noca_3518 Nocardioides sp. JS614 dihydrolipoamide dehydrogenase YP_924705.1 3729951 R 196162 CDS YP_924706.1 119717741 4595701 3731451..3731858 1 NC_008699.1 KEGG: sco:SCO4918 hypothetical protein; hypothetical protein 3731858 4595701 Noca_3519 Nocardioides sp. JS614 hypothetical protein YP_924706.1 3731451 D 196162 CDS YP_924707.1 119717742 4595702 complement(3731972..3732916) 1 NC_008699.1 KEGG: rha:RHA1_ro05202 hypothetical protein; hypothetical protein 3732916 4595702 Noca_3520 Nocardioides sp. JS614 hypothetical protein YP_924707.1 3731972 R 196162 CDS YP_924708.1 119717743 4595703 3733125..3733946 1 NC_008699.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase 3733946 4595703 Noca_3521 Nocardioides sp. JS614 purine nucleoside phosphorylase YP_924708.1 3733125 D 196162 CDS YP_924709.1 119717744 4595704 3733955..3734623 1 NC_008699.1 PFAM: regulatory protein, TetR; KEGG: reu:Reut_B3897 regulatory protein, TetR; TetR family transcriptional regulator 3734623 4595704 Noca_3522 Nocardioides sp. JS614 TetR family transcriptional regulator YP_924709.1 3733955 D 196162 CDS YP_924710.1 119717745 4595705 3734613..3735446 1 NC_008699.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: tfu:Tfu_1140 hypothetical protein; NAD-dependent epimerase/dehydratase 3735446 4595705 Noca_3523 Nocardioides sp. JS614 NAD-dependent epimerase/dehydratase YP_924710.1 3734613 D 196162 CDS YP_924711.1 119717746 4595706 3735477..3736481 1 NC_008699.1 PFAM: aldo/keto reductase; KEGG: ade:Adeh_3036 aldo/keto reductase; aldo/keto reductase 3736481 4595706 Noca_3524 Nocardioides sp. JS614 aldo/keto reductase YP_924711.1 3735477 D 196162 CDS YP_924712.1 119717747 4595707 complement(3736478..3736924) 1 NC_008699.1 KEGG: sco:SCO1535 hypothetical protein; hypothetical protein 3736924 4595707 Noca_3525 Nocardioides sp. JS614 hypothetical protein YP_924712.1 3736478 R 196162 CDS YP_924713.1 119717748 4595708 3736942..3738594 1 NC_008699.1 PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: sma:SAV3343 putative phosphomannomutase; phosphoglucomutase/phosphomannomutase alpha/beta/subunit 3738594 4595708 Noca_3526 Nocardioides sp. JS614 phosphoglucomutase/phosphomannomutase alpha/beta/subunit YP_924713.1 3736942 D 196162 CDS YP_924714.1 119717749 4595709 complement(3738591..3739193) 1 NC_008699.1 hypothetical protein 3739193 4595709 Noca_3527 Nocardioides sp. JS614 hypothetical protein YP_924714.1 3738591 R 196162 CDS YP_924715.1 119717750 4595710 3739220..3740194 1 NC_008699.1 KEGG: sco:SCO4914 putative deoxyribose-phosphate aldolase; TIGRFAM: deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; deoxyribose-phosphate aldolase 3740194 4595710 Noca_3528 Nocardioides sp. JS614 deoxyribose-phosphate aldolase YP_924715.1 3739220 D 196162 CDS YP_924716.1 119717751 4595711 3740200..3741654 1 NC_008699.1 PFAM: aldehyde dehydrogenase; KEGG: sco:SCO4913 putative aldehyde dehydrogenase; aldehyde dehydrogenase (acceptor) 3741654 4595711 Noca_3529 Nocardioides sp. JS614 aldehyde dehydrogenase (acceptor) YP_924716.1 3740200 D 196162 CDS YP_924717.1 119717752 4595712 3741719..3742588 1 NC_008699.1 PFAM: aldehyde dehydrogenase; KEGG: sma:SAV3348 aldehyde dehydrogenase; aldehyde dehydrogenase 3742588 4595712 Noca_3530 Nocardioides sp. JS614 aldehyde dehydrogenase YP_924717.1 3741719 D 196162 CDS YP_924718.1 119717753 4595713 3742596..3743207 1 NC_008699.1 KEGG: sma:SAV3350 ATP-binding protein; uridine kinase 3743207 4595713 Noca_3531 Nocardioides sp. JS614 uridine kinase YP_924718.1 3742596 D 196162 CDS YP_924719.1 119717754 4595714 3743204..3743752 1 NC_008699.1 hypothetical protein 3743752 4595714 Noca_3532 Nocardioides sp. JS614 hypothetical protein YP_924719.1 3743204 D 196162 CDS YP_924720.1 119717755 4595715 complement(3743754..3744875) 1 NC_008699.1 catalyzes the formation of inosine from adenosine; adenosine deaminase 3744875 4595715 Noca_3533 Nocardioides sp. JS614 adenosine deaminase YP_924720.1 3743754 R 196162 CDS YP_924721.1 119717756 4595716 3744941..3745393 1 NC_008699.1 PFAM: MaoC domain protein dehydratase; KEGG: sco:SCO1698 hypothetical protein; dehydratase 3745393 4595716 Noca_3534 Nocardioides sp. JS614 dehydratase YP_924721.1 3744941 D 196162 CDS YP_924722.1 119717757 4595717 complement(3745401..3746687) 1 NC_008699.1 Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate; thymidine phosphorylase 3746687 deoA 4595717 deoA Nocardioides sp. JS614 thymidine phosphorylase YP_924722.1 3745401 R 196162 CDS YP_924723.1 119717758 4595718 complement(3746680..3747855) 1 NC_008699.1 PFAM: cytochrome P450; KEGG: sco:SCO3636 putative cytochrome P-450 hydroxylase; cytochrome P450 3747855 4595718 Noca_3536 Nocardioides sp. JS614 cytochrome P450 YP_924723.1 3746680 R 196162 CDS YP_924724.1 119717759 4595719 complement(3747827..3748228) 1 NC_008699.1 TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: lxx:Lxx04640 cytidine deaminase; cytidine deaminase 3748228 4595719 Noca_3537 Nocardioides sp. JS614 cytidine deaminase YP_924724.1 3747827 R 196162 CDS YP_924725.1 119717760 4595720 complement(3748228..3749526) 1 NC_008699.1 PFAM: inner-membrane translocator; KEGG: sma:SAV3367 putative sugar ABC transporter integral membrane protein; inner-membrane translocator 3749526 4595720 Noca_3538 Nocardioides sp. JS614 inner-membrane translocator YP_924725.1 3748228 R 196162 CDS YP_924726.1 119717761 4595721 complement(3749573..3750688) 1 NC_008699.1 PFAM: inner-membrane translocator; KEGG: sco:SCO4887 putative sugar ABC transporter integral membrane protein; inner-membrane translocator 3750688 4595721 Noca_3539 Nocardioides sp. JS614 inner-membrane translocator YP_924726.1 3749573 R 196162 CDS YP_924727.1 119717762 4595722 complement(3750685..3752205) 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO4886 putative sugar ABC transporter ATP-binding protein; ABC transporter-like protein 3752205 4595722 Noca_3540 Nocardioides sp. JS614 ABC transporter-like protein YP_924727.1 3750685 R 196162 CDS YP_924728.1 119717763 4595723 complement(3752333..3753397) 1 NC_008699.1 PFAM: basic membrane lipoprotein; KEGG: sco:SCO4885 putative lipoprotein; basic membrane lipoprotein 3753397 4595723 Noca_3541 Nocardioides sp. JS614 basic membrane lipoprotein YP_924728.1 3752333 R 196162 CDS YP_924729.1 119717764 4595724 complement(3753530..3754750) 1 NC_008699.1 KEGG: fra:Francci3_0694 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 3754750 4595724 Noca_3542 Nocardioides sp. JS614 amidohydrolase YP_924729.1 3753530 R 196162 CDS YP_924730.1 119717765 4595725 complement(3754806..3755792) 1 NC_008699.1 TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; KEGG: sma:SAV2041 putative lysine arginine ornithine transport system kinase; LAO/AO transport system ATPase 3755792 4595725 Noca_3543 Nocardioides sp. JS614 LAO/AO transport system ATPase YP_924730.1 3754806 R 196162 CDS YP_924731.1 119717766 4595726 complement(3755792..3757954) 1 NC_008699.1 MDM; functions in conversion of succinate to propionate; methylmalonyl-CoA mutase 3757954 4595726 Noca_3544 Nocardioides sp. JS614 methylmalonyl-CoA mutase YP_924731.1 3755792 R 196162 CDS YP_924732.1 119717767 4595727 complement(3757951..3759660) 1 NC_008699.1 PFAM: methylmalonyl-CoA mutase; KEGG: fal:FRAAL4951 methylmalonyl-CoA mutase small subunit (MCM-beta); methylmalonyl-CoA mutase 3759660 4595727 Noca_3545 Nocardioides sp. JS614 methylmalonyl-CoA mutase YP_924732.1 3757951 R 196162 CDS YP_924733.1 119717768 4595728 complement(3759730..3760473) 1 NC_008699.1 hypothetical protein 3760473 4595728 Noca_3546 Nocardioides sp. JS614 hypothetical protein YP_924733.1 3759730 R 196162 CDS YP_924734.1 119717769 4595729 complement(3760547..3761323) 1 NC_008699.1 catalyzes the fumarate and succinate interconversion; fumarate reductase is used under anaerobic conditions with glucose or glycerol as carbon source; fumarate reductase iron-sulfur subunit 3761323 4595729 Noca_3547 Nocardioides sp. JS614 fumarate reductase iron-sulfur subunit YP_924734.1 3760547 R 196162 CDS YP_924735.1 119717770 4595730 complement(3761334..3763199) 1 NC_008699.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 3763199 sdhA 4595730 sdhA Nocardioides sp. JS614 succinate dehydrogenase flavoprotein subunit YP_924735.1 3761334 R 196162 CDS YP_924736.1 119717771 4599428 complement(3763276..3764109) 1 NC_008699.1 KEGG: sco:SCO5108 integral membrane protein; integral membrane protein 3764109 4599428 Noca_3549 Nocardioides sp. JS614 integral membrane protein YP_924736.1 3763276 R 196162 CDS YP_924737.1 119717772 4599429 3764176..3765345 1 NC_008699.1 PFAM: glycosyl transferase, group 1; KEGG: mmc:Mmcs_0761 glycosyl transferase, group 1; group 1 glycosyl transferase 3765345 4599429 Noca_3550 Nocardioides sp. JS614 group 1 glycosyl transferase YP_924737.1 3764176 D 196162 CDS YP_924738.1 119717773 4599430 3765409..3766110 1 NC_008699.1 TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family; KEGG: tfu:Tfu_2453 succinate dehydrogenase, cytochrome b558 subunit; succinate dehydrogenase subunit C 3766110 4599430 Noca_3551 Nocardioides sp. JS614 succinate dehydrogenase subunit C YP_924738.1 3765409 D 196162 CDS YP_924739.1 119717774 4599431 3766131..3768149 1 NC_008699.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 3768149 sdhA 4599431 sdhA Nocardioides sp. JS614 succinate dehydrogenase flavoprotein subunit YP_924739.1 3766131 D 196162 CDS YP_924740.1 119717775 4599432 3768149..3768892 1 NC_008699.1 TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: tfu:Tfu_2451 putative succinate dehydrogenase iron-sulfur protein; succinate dehydrogenase/fumarate reductase iron-sulfur subunit 3768892 4599432 Noca_3553 Nocardioides sp. JS614 succinate dehydrogenase/fumarate reductase iron-sulfur subunit YP_924740.1 3768149 D 196162 CDS YP_924741.1 119717776 4599433 complement(3768901..3769923) 1 NC_008699.1 KEGG: ter:Tery_3075 TPR repeat; hypothetical protein 3769923 4599433 Noca_3554 Nocardioides sp. JS614 hypothetical protein YP_924741.1 3768901 R 196162 CDS YP_924742.1 119717777 4599434 complement(3769920..3771770) 1 NC_008699.1 KEGG: gsu:GSU0970 hypothetical protein; hypothetical protein 3771770 4599434 Noca_3555 Nocardioides sp. JS614 hypothetical protein YP_924742.1 3769920 R 196162 CDS YP_924743.1 119717778 4599435 complement(3771803..3772342) 1 NC_008699.1 PFAM: 2',5' RNA ligase; KEGG: fal:FRAAL1171 putative secreted protein; putative phosphodiesterase domain; 2',5' RNA ligase 3772342 4599435 Noca_3556 Nocardioides sp. JS614 2',5' RNA ligase YP_924743.1 3771803 R 196162 CDS YP_924744.1 119717779 4599436 complement(3772353..3773411) 1 NC_008699.1 TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase, class Ib; KEGG: nfa:nfa9360 putative tryptophanyl-tRNA synthetase; tryptophanyl-tRNA synthetase 3773411 4599436 Noca_3557 Nocardioides sp. JS614 tryptophanyl-tRNA synthetase YP_924744.1 3772353 R 196162 CDS YP_924745.1 119717780 4599437 complement(3773486..3774958) 1 NC_008699.1 PFAM: glycoside hydrolase, family 5; KEGG: pac:PPA2106 endoglycoceramidase; endoglycoceramidase 3774958 4599437 Noca_3558 Nocardioides sp. JS614 endoglycoceramidase YP_924745.1 3773486 R 196162 CDS YP_924746.1 119717781 4599438 3775031..3775687 1 NC_008699.1 PFAM: GCN5-related N-acetyltransferase; KEGG: fal:FRAAL1305 putative acetyltransferase; N-acetyltransferase GCN5 3775687 4599438 Noca_3559 Nocardioides sp. JS614 N-acetyltransferase GCN5 YP_924746.1 3775031 D 196162 CDS YP_924747.1 119717782 4599439 complement(3775561..3776796) 1 NC_008699.1 PFAM: major facilitator superfamily MFS_1; KEGG: nfa:nfa9260 putative transporter; major facilitator transporter 3776796 4599439 Noca_3560 Nocardioides sp. JS614 major facilitator transporter YP_924747.1 3775561 R 196162 CDS YP_924748.1 119717783 4599440 complement(3776860..3777690) 1 NC_008699.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rha:RHA1_ro02614 short chain dehydrogenase; short chain dehydrogenase 3777690 4599440 Noca_3561 Nocardioides sp. JS614 short chain dehydrogenase YP_924748.1 3776860 R 196162 CDS YP_924749.1 119717784 4599441 complement(3777687..3779042) 1 NC_008699.1 PFAM: cytochrome P450; KEGG: rha:RHA1_ro05210 cytochrome P450 CYP136; cytochrome P450 3779042 4599441 Noca_3562 Nocardioides sp. JS614 cytochrome P450 YP_924749.1 3777687 R 196162 CDS YP_924750.1 119717785 4599442 3779119..3779730 1 NC_008699.1 KEGG: rha:RHA1_ro05211 possible transcriptional regulator, TetR family; TetR family transcriptional regulator 3779730 4599442 Noca_3563 Nocardioides sp. JS614 TetR family transcriptional regulator YP_924750.1 3779119 D 196162 CDS YP_924751.1 119717786 4599443 3780735..3781046 1 NC_008699.1 PFAM: transposase IS3/IS911 family protein; KEGG: cef:CE2618 putative transposase; transposase IS3/IS911 family protein 3781046 4599443 Noca_3564 Nocardioides sp. JS614 transposase IS3/IS911 family protein YP_924751.1 3780735 D 196162 CDS YP_924752.1 119717787 4599444 3781262..3782014 1 NC_008699.1 PFAM: Integrase, catalytic region; KEGG: cef:CE2619 putative transposase; integrase catalytic subunit 3782014 4599444 Noca_3565 Nocardioides sp. JS614 integrase catalytic subunit YP_924752.1 3781262 D 196162 CDS YP_924753.1 119717788 4599445 complement(3781989..3782807) 1 NC_008699.1 KEGG: sus:Acid_5880 TIR protein; hypothetical protein 3782807 4599445 Noca_3566 Nocardioides sp. JS614 hypothetical protein YP_924753.1 3781989 R 196162 CDS YP_924754.1 119717789 4599446 complement(3783296..3784030) 1 NC_008699.1 hypothetical protein 3784030 4599446 Noca_3567 Nocardioides sp. JS614 hypothetical protein YP_924754.1 3783296 R 196162 CDS YP_924755.1 119717790 4599447 complement(3784225..3784893) 1 NC_008699.1 hypothetical protein 3784893 4599447 Noca_3568 Nocardioides sp. JS614 hypothetical protein YP_924755.1 3784225 R 196162 CDS YP_924756.1 119717791 4599448 complement(3785638..3786171) 1 NC_008699.1 hypothetical protein 3786171 4599448 Noca_3569 Nocardioides sp. JS614 hypothetical protein YP_924756.1 3785638 R 196162 CDS YP_924757.1 119717792 4599449 complement(3787513..3788631) 1 NC_008699.1 PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: sco:SCO3537 DNA-binding protein; hypothetical protein 3788631 4599449 Noca_3570 Nocardioides sp. JS614 hypothetical protein YP_924757.1 3787513 R 196162 CDS YP_924758.1 119717793 4599450 complement(3788628..3789377) 1 NC_008699.1 hypothetical protein 3789377 4599450 Noca_3571 Nocardioides sp. JS614 hypothetical protein YP_924758.1 3788628 R 196162 CDS YP_924759.1 119717794 4599451 3789653..3790357 1 NC_008699.1 hypothetical protein 3790357 4599451 Noca_3572 Nocardioides sp. JS614 hypothetical protein YP_924759.1 3789653 D 196162 CDS YP_924760.1 119717795 4599452 3790417..3792108 1 NC_008699.1 KEGG: mpa:MAP0443c hypothetical protein; hypothetical protein 3792108 4599452 Noca_3573 Nocardioides sp. JS614 hypothetical protein YP_924760.1 3790417 D 196162 CDS YP_924761.1 119717796 4599453 complement(3792140..3792676) 1 NC_008699.1 hypothetical protein 3792676 4599453 Noca_3574 Nocardioides sp. JS614 hypothetical protein YP_924761.1 3792140 R 196162 CDS YP_924762.1 119717797 4599454 complement(3792669..3794882) 1 NC_008699.1 KEGG: sma:SAV7214 putative isocitrate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type; isocitrate dehydrogenase 3794882 4599454 Noca_3575 Nocardioides sp. JS614 isocitrate dehydrogenase YP_924762.1 3792669 R 196162 CDS YP_924763.1 119717798 4599455 3795060..3796055 1 NC_008699.1 TIGRFAM: MIP family channel proteins; PFAM: major intrinsic protein; KEGG: bcn:Bcen_2859 MIP family channel proteins; MIP family channel protein 3796055 4599455 Noca_3576 Nocardioides sp. JS614 MIP family channel protein YP_924763.1 3795060 D 196162 CDS YP_924764.1 119717799 4599456 complement(3796036..3796713) 1 NC_008699.1 hypothetical protein 3796713 4599456 Noca_3577 Nocardioides sp. JS614 hypothetical protein YP_924764.1 3796036 R 196162 CDS YP_924765.1 119717800 4599457 3796792..3797778 1 NC_008699.1 catalyzes the oxidation of malate to oxaloacetate; malate dehydrogenase 3797778 4599457 Noca_3578 Nocardioides sp. JS614 malate dehydrogenase YP_924765.1 3796792 D 196162 CDS YP_924766.1 119717801 4599458 complement(3797797..3798486) 1 NC_008699.1 KEGG: nfa:nfa19270 hypothetical protein; hypothetical protein 3798486 4599458 Noca_3579 Nocardioides sp. JS614 hypothetical protein YP_924766.1 3797797 R 196162 CDS YP_924767.1 119717802 4599459 complement(3798487..3798837) 1 NC_008699.1 KEGG: nfa:nfa19270 hypothetical protein; hypothetical protein 3798837 4599459 Noca_3580 Nocardioides sp. JS614 hypothetical protein YP_924767.1 3798487 R 196162 CDS YP_924768.1 119717803 4599460 complement(3798869..3799201) 1 NC_008699.1 KEGG: tfu:Tfu_2569 putative integral membrane protein; putative integral membrane protein 3799201 4599460 Noca_3581 Nocardioides sp. JS614 putative integral membrane protein YP_924768.1 3798869 R 196162 CDS YP_924769.1 119717804 4599461 complement(3799198..3800049) 1 NC_008699.1 PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: tfu:Tfu_2571 methenyltetrahydrofolate cyclohydrolase; methenyltetrahydrofolate cyclohydrolase 3800049 4599461 Noca_3582 Nocardioides sp. JS614 methenyltetrahydrofolate cyclohydrolase YP_924769.1 3799198 R 196162 CDS YP_924770.1 119717805 4599462 complement(3800072..3801649) 1 NC_008699.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 3801649 purH 4599462 purH Nocardioides sp. JS614 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_924770.1 3800072 R 196162 CDS YP_924771.1 119717806 4599463 complement(3801758..3802384) 1 NC_008699.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 3802384 purN 4599463 purN Nocardioides sp. JS614 phosphoribosylglycinamide formyltransferase YP_924771.1 3801758 R 196162 CDS YP_924772.1 119717807 4599464 complement(3802381..3803649) 1 NC_008699.1 KEGG: tfu:Tfu_2575 hypothetical protein; hypothetical protein 3803649 4599464 Noca_3585 Nocardioides sp. JS614 hypothetical protein YP_924772.1 3802381 R 196162 CDS YP_924773.1 119717808 4599465 3803742..3805571 1 NC_008699.1 KEGG: sma:SAV3318 putative RNA polymerase ECF-subfamily sigma factor; hypothetical protein 3805571 4599465 Noca_3586 Nocardioides sp. JS614 hypothetical protein YP_924773.1 3803742 D 196162 CDS YP_924774.1 119717809 4599466 3805966..3806478 1 NC_008699.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sco:SCO3709 putative ECF sigma factor; sigma-70 factor 3806478 4599466 Noca_3587 Nocardioides sp. JS614 sigma-70 factor YP_924774.1 3805966 D 196162 CDS YP_924775.1 119717810 4599467 3806471..3807427 1 NC_008699.1 hypothetical protein 3807427 4599467 Noca_3588 Nocardioides sp. JS614 hypothetical protein YP_924775.1 3806471 D 196162 CDS YP_924776.1 119717811 4599468 complement(3807536..3808429) 1 NC_008699.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 3808429 4599468 Noca_3589 Nocardioides sp. JS614 succinyl-CoA synthetase subunit alpha YP_924776.1 3807536 R 196162 CDS YP_924777.1 119717812 4599393 complement(3808449..3809609) 1 NC_008699.1 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 3809609 sucC 4599393 sucC Nocardioides sp. JS614 succinyl-CoA synthetase subunit beta YP_924777.1 3808449 R 196162 CDS YP_924778.1 119717813 4599394 complement(3809768..3810199) 1 NC_008699.1 PFAM: cobalamin B12-binding domain protein; KEGG: sco:SCO4800 isobutiryl CoA mutase, small subunit; cobalamin B12-binding domain-containing protein 3810199 4599394 Noca_3591 Nocardioides sp. JS614 cobalamin B12-binding domain-containing protein YP_924778.1 3809768 R 196162 CDS YP_924779.1 119717814 4599395 3810397..3811362 1 NC_008699.1 PFAM: peptidase M23B; KEGG: sma:SAV4118 peptidase; peptidase M23B 3811362 4599395 Noca_3592 Nocardioides sp. JS614 peptidase M23B YP_924779.1 3810397 D 196162 CDS YP_924780.1 119717815 4599396 complement(3811375..3813768) 1 NC_008699.1 TIGRFAM: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase; KEGG: sco:SCO4797 putative ATP-dependent DNA helicase II; ATP-dependent DNA helicase PcrA 3813768 4599396 Noca_3593 Nocardioides sp. JS614 ATP-dependent DNA helicase PcrA YP_924780.1 3811375 R 196162 CDS YP_924781.1 119717816 4599397 complement(3813831..3814307) 1 NC_008699.1 hypothetical protein 3814307 4599397 Noca_3594 Nocardioides sp. JS614 hypothetical protein YP_924781.1 3813831 R 196162 CDS YP_924782.1 119717817 4599398 complement(3814319..3814681) 1 NC_008699.1 PFAM: response regulator receiver; KEGG: gme:Gmet_3119 response regulator receiver domain protein (CheY-like); response regulator receiver 3814681 4599398 Noca_3595 Nocardioides sp. JS614 response regulator receiver YP_924782.1 3814319 R 196162 CDS YP_924783.1 119717818 4599399 complement(3814715..3815167) 1 NC_008699.1 KEGG: aba:Acid345_1530 hypothetical protein; hypothetical protein 3815167 4599399 Noca_3596 Nocardioides sp. JS614 hypothetical protein YP_924783.1 3814715 R 196162 CDS YP_924784.1 119717819 4599400 complement(3815164..3815559) 1 NC_008699.1 PFAM: response regulator receiver; KEGG: aba:Acid345_1527 response regulator receiver protein, CheY; response regulator receiver 3815559 4599400 Noca_3597 Nocardioides sp. JS614 response regulator receiver YP_924784.1 3815164 R 196162 CDS YP_924785.1 119717820 4599401 complement(3815547..3816383) 1 NC_008699.1 PFAM: MCP methyltransferase, CheR-type; Methyltransferase type 12; KEGG: aba:Acid345_1529 MCP methyltransferase, CheR-type; chemotaxis protein CheR 3816383 4599401 Noca_3598 Nocardioides sp. JS614 chemotaxis protein CheR YP_924785.1 3815547 R 196162 CDS YP_924786.1 119717821 4599402 complement(3816380..3817480) 1 NC_008699.1 PFAM: CheB methylesterase; response regulator receiver; KEGG: aba:Acid345_1528 response regulator receiver modulated CheB methylesterase; response regulator receiver modulated CheB methylesterase 3817480 4599402 Noca_3599 Nocardioides sp. JS614 response regulator receiver modulated CheB methylesterase YP_924786.1 3816380 R 196162 CDS YP_924787.1 119717822 4599403 complement(3817577..3818482) 1 NC_008699.1 hypothetical protein 3818482 4599403 Noca_3600 Nocardioides sp. JS614 hypothetical protein YP_924787.1 3817577 R 196162 CDS YP_924788.1 119717823 4599404 complement(3818526..3818801) 1 NC_008699.1 KEGG: aba:Acid345_1672 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3818801 4599404 Noca_3601 Nocardioides sp. JS614 methyl-accepting chemotaxis sensory transducer YP_924788.1 3818526 R 196162 CDS YP_924789.1 119717824 4599405 complement(3818828..3820384) 1 NC_008699.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: aba:Acid345_1672 methyl-accepting chemotaxis sensory transducer; chemotaxis sensory transducer 3820384 4599405 Noca_3602 Nocardioides sp. JS614 chemotaxis sensory transducer YP_924789.1 3818828 R 196162 CDS YP_924790.1 119717825 4599406 complement(3820433..3820852) 1 NC_008699.1 PFAM: CheW domain protein; KEGG: aba:Acid345_1525 CheW protein; CheW protein 3820852 4599406 Noca_3603 Nocardioides sp. JS614 CheW protein YP_924790.1 3820433 R 196162 CDS YP_924791.1 119717826 4599407 complement(3820849..3823077) 1 NC_008699.1 PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: aba:Acid345_1524 CheA signal transduction histidine kinases; ATPase domain-containing protein 3823077 4599407 Noca_3604 Nocardioides sp. JS614 ATPase domain-containing protein YP_924791.1 3820849 R 196162 CDS YP_924792.1 119717827 4599408 complement(3823175..3823531) 1 NC_008699.1 KEGG: sma:SAV3466 integral membrane protein; integral membrane protein 3823531 4599408 Noca_3605 Nocardioides sp. JS614 integral membrane protein YP_924792.1 3823175 R 196162 CDS YP_924793.1 119717828 4599409 complement(3823558..3824247) 1 NC_008699.1 PFAM: regulatory protein, LuxR; response regulator receiver; Bacterio-opsin activator, HTH domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sma:SAV3470 two-component system response regulator; regulatory protein LuxR 3824247 4599409 Noca_3606 Nocardioides sp. JS614 regulatory protein LuxR YP_924793.1 3823558 R 196162 CDS YP_924794.1 119717829 4599410 complement(3824240..3825562) 1 NC_008699.1 PFAM: ATP-binding region, ATPase domain protein domain protein; PspC domain protein; KEGG: sma:SAV3471 two-component system sensor kinase; ATPase domain-containing protein 3825562 4599410 Noca_3607 Nocardioides sp. JS614 ATPase domain-containing protein YP_924794.1 3824240 R 196162 CDS YP_924795.1 119717830 4599411 3825670..3826929 1 NC_008699.1 PFAM: PspC domain protein; KEGG: sma:SAV3472 hypothetical protein; PspC domain-containing protein 3826929 4599411 Noca_3608 Nocardioides sp. JS614 PspC domain-containing protein YP_924795.1 3825670 D 196162 CDS YP_924796.1 119717831 4599412 3826926..3827234 1 NC_008699.1 hypothetical protein 3827234 4599412 Noca_3609 Nocardioides sp. JS614 hypothetical protein YP_924796.1 3826926 D 196162 CDS YP_924797.1 119717832 4599413 3827256..3827798 1 NC_008699.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: tfu:Tfu_0591 hypothetical protein; YbaK/prolyl-tRNA synthetase associated domain-containing protein 3827798 4599413 Noca_3610 Nocardioides sp. JS614 YbaK/prolyl-tRNA synthetase associated domain-containing protein YP_924797.1 3827256 D 196162 CDS YP_924798.1 119717833 4599414 3827809..3828318 1 NC_008699.1 KEGG: mmc:Mmcs_2518 hypothetical protein; hypothetical protein 3828318 4599414 Noca_3611 Nocardioides sp. JS614 hypothetical protein YP_924798.1 3827809 D 196162 CDS YP_924799.1 119717834 4599415 3828352..3829380 1 NC_008699.1 PFAM: luciferase family protein; KEGG: tfu:Tfu_0980 putative oxidoreductase; luciferase family protein 3829380 4599415 Noca_3612 Nocardioides sp. JS614 luciferase family protein YP_924799.1 3828352 D 196162 CDS YP_924800.1 119717835 4599416 3829380..3830528 1 NC_008699.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: sco:SCO6787 probable acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 3830528 4599416 Noca_3613 Nocardioides sp. JS614 acyl-CoA dehydrogenase domain-containing protein YP_924800.1 3829380 D 196162 CDS YP_924801.1 119717836 4599417 complement(3830561..3830836) 1 NC_008699.1 hypothetical protein 3830836 4599417 Noca_3614 Nocardioides sp. JS614 hypothetical protein YP_924801.1 3830561 R 196162 CDS YP_924802.1 119717837 4599418 3830913..3831860 1 NC_008699.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: ava:Ava_3981 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 3831860 4599418 Noca_3615 Nocardioides sp. JS614 NAD-dependent epimerase/dehydratase YP_924802.1 3830913 D 196162 CDS YP_924803.1 119717838 4599419 complement(3831968..3832363) 1 NC_008699.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: mmc:Mmcs_2855 protein of unknown function DUF222; HNH endonuclease 3832363 4599419 Noca_3616 Nocardioides sp. JS614 HNH endonuclease YP_924803.1 3831968 R 196162 CDS YP_924804.1 119717839 4599420 3832817..3834643 1 NC_008699.1 PFAM: AMP-dependent synthetase and ligase; KEGG: sco:SCO6790 putative long chain fatty acid coA ligase; AMP-dependent synthetase and ligase 3834643 4599420 Noca_3617 Nocardioides sp. JS614 AMP-dependent synthetase and ligase YP_924804.1 3832817 D 196162 CDS YP_924805.1 119717840 4599421 3834830..3836968 1 NC_008699.1 PFAM: MMPL domain protein; KEGG: sma:SAV6879 putative membrane protein; MMPL domain-containing protein 3836968 4599421 Noca_3618 Nocardioides sp. JS614 MMPL domain-containing protein YP_924805.1 3834830 D 196162 CDS YP_924806.1 119717841 4599422 3837036..3839561 1 NC_008699.1 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase; catalyzes radical-mediated transfer of hydroxybenzyl group from 4-hydroxyphenylpyruvate (HPP) to 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione to form 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO); functions in F420 biosynthesis; FO synthase 3839561 fbiC 4599422 fbiC Nocardioides sp. JS614 FO synthase YP_924806.1 3837036 D 196162 CDS YP_924807.1 119717842 4599423 complement(3839565..3841961) 1 NC_008699.1 PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: cya:CYA_1981 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase family protein; putative phosphoketolase 3841961 4599423 Noca_3620 Nocardioides sp. JS614 putative phosphoketolase YP_924807.1 3839565 R 196162 CDS YP_924808.1 119717843 4599424 3842054..3842494 1 NC_008699.1 KEGG: rha:RHA1_ro02139 hypothetical protein; hypothetical protein 3842494 4599424 Noca_3621 Nocardioides sp. JS614 hypothetical protein YP_924808.1 3842054 D 196162 CDS YP_924809.1 119717844 4599425 3842546..3842689 1 NC_008699.1 hypothetical protein 3842689 4599425 Noca_3622 Nocardioides sp. JS614 hypothetical protein YP_924809.1 3842546 D 196162 CDS YP_924810.1 119717845 4599426 complement(3842783..3843433) 1 NC_008699.1 TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: mmc:Mmcs_2993 phage SPO1 DNA polymerase-related protein; phage SPO1 DNA polymerase-like protein 3843433 4599426 Noca_3623 Nocardioides sp. JS614 phage SPO1 DNA polymerase-like protein YP_924810.1 3842783 R 196162 CDS YP_924811.1 119717846 4599427 3843464..3844081 1 NC_008699.1 KEGG: nfa:nfa43450 hypothetical protein; hypothetical protein 3844081 4599427 Noca_3624 Nocardioides sp. JS614 hypothetical protein YP_924811.1 3843464 D 196162 CDS YP_924812.1 119717847 4597448 3844184..3844792 1 NC_008699.1 KEGG: mmc:Mmcs_3326 luciferase-like protein; luciferase-like protein 3844792 4597448 Noca_3625 Nocardioides sp. JS614 luciferase-like protein YP_924812.1 3844184 D 196162 CDS YP_924813.1 119717848 4597449 3844875..3845099 1 NC_008699.1 hypothetical protein 3845099 4597449 Noca_3626 Nocardioides sp. JS614 hypothetical protein YP_924813.1 3844875 D 196162 CDS YP_924814.1 119717849 4597450 3845101..3846060 1 NC_008699.1 KEGG: sco:SCO6495 dehydrogenase; dehydrogenase 3846060 4597450 Noca_3627 Nocardioides sp. JS614 dehydrogenase YP_924814.1 3845101 D 196162 CDS YP_924815.1 119717850 4597451 complement(3846015..3846470) 1 NC_008699.1 KEGG: mmc:Mmcs_3027 hypothetical protein; hypothetical protein 3846470 4597451 Noca_3628 Nocardioides sp. JS614 hypothetical protein YP_924815.1 3846015 R 196162 CDS YP_924816.1 119717851 4597452 3846719..3848005 1 NC_008699.1 KEGG: bcl:ABC0432 O-acetylhomoserine (thiol)-lyase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; O-acetylhomoserine/O-acetylserine sulfhydrylase 3848005 4597452 Noca_3629 Nocardioides sp. JS614 O-acetylhomoserine/O-acetylserine sulfhydrylase YP_924816.1 3846719 D 196162 CDS YP_924817.1 119717852 4597453 3848010..3849119 1 NC_008699.1 KEGG: nha:Nham_0676 homoserine O-acetyltransferase; TIGRFAM: homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold; homoserine O-acetyltransferase 3849119 4597453 Noca_3630 Nocardioides sp. JS614 homoserine O-acetyltransferase YP_924817.1 3848010 D 196162 CDS YP_924818.1 119717853 4597454 complement(3849134..3850717) 1 NC_008699.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 3850717 guaA 4597454 guaA Nocardioides sp. JS614 GMP synthase YP_924818.1 3849134 R 196162 CDS YP_924819.1 119717854 4597455 complement(3851093..3852805) 1 NC_008699.1 PFAM: glucose-methanol-choline oxidoreductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD dependent oxidoreductase; KEGG: nfa:nfa43500 putative cholesterol oxidase; glucose-methanol-choline oxidoreductase 3852805 4597455 Noca_3632 Nocardioides sp. JS614 glucose-methanol-choline oxidoreductase YP_924819.1 3851093 R 196162 CDS YP_924820.1 119717855 4597456 complement(3852802..3854424) 1 NC_008699.1 NADP-dependent semialdehyde dehydrogenase; part of alternative pathway from alpha-ketoglutarate to succinate; succinate-semialdehyde dehydrogenase 3854424 gabD2 4597456 gabD2 Nocardioides sp. JS614 succinate-semialdehyde dehydrogenase YP_924820.1 3852802 R 196162 CDS YP_924821.1 119717856 4597457 complement(3854528..3855970) 1 NC_008699.1 PFAM: aldehyde dehydrogenase; KEGG: mpa:MAP2338 hypothetical protein; aldehyde dehydrogenase 3855970 4597457 Noca_3634 Nocardioides sp. JS614 aldehyde dehydrogenase YP_924821.1 3854528 R 196162 CDS YP_924822.1 119717857 4597458 complement(3855996..3857117) 1 NC_008699.1 KEGG: mbo:Mb3194 hypothetical protein; hypothetical protein 3857117 4597458 Noca_3635 Nocardioides sp. JS614 hypothetical protein YP_924822.1 3855996 R 196162 CDS YP_924823.1 119717858 4597459 complement(3857114..3858241) 1 NC_008699.1 PFAM: aminoglycoside phosphotransferase; KEGG: mmc:Mmcs_1560 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 3858241 4597459 Noca_3636 Nocardioides sp. JS614 aminoglycoside phosphotransferase YP_924823.1 3857114 R 196162 CDS YP_924824.1 119717859 4597460 complement(3858439..3860193) 1 NC_008699.1 PFAM: FAD dependent oxidoreductase; KEGG: tfu:Tfu_2593 glycerol-3-phosphate dehydrogenase; FAD dependent oxidoreductase 3860193 4597460 Noca_3637 Nocardioides sp. JS614 FAD dependent oxidoreductase YP_924824.1 3858439 R 196162 CDS YP_924825.1 119717860 4597461 3860266..3861477 1 NC_008699.1 KEGG: pac:PPA1185 putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation); putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) 3861477 4597461 Noca_3638 Nocardioides sp. JS614 putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) YP_924825.1 3860266 D 196162 CDS YP_924826.1 119717861 4597462 complement(3861481..3862269) 1 NC_008699.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: sma:SAV3194 hydrolase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 3862269 4597462 Noca_3639 Nocardioides sp. JS614 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_924826.1 3861481 R 196162 CDS YP_924827.1 119717862 4597463 complement(3862277..3863383) 1 NC_008699.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5-monophosphate dehydrogenase 3863383 4597463 Noca_3640 Nocardioides sp. JS614 inosine 5-monophosphate dehydrogenase YP_924827.1 3862277 R 196162 CDS YP_924828.1 119717863 4597464 complement(3863447..3864025) 1 NC_008699.1 hypothetical protein 3864025 4597464 Noca_3641 Nocardioides sp. JS614 hypothetical protein YP_924828.1 3863447 R 196162 CDS YP_924829.1 119717864 4597465 3864123..3866015 1 NC_008699.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: sco:SCO1071 two component system sensor kinase; ATPase domain-containing protein 3866015 4597465 Noca_3642 Nocardioides sp. JS614 ATPase domain-containing protein YP_924829.1 3864123 D 196162 CDS YP_924830.1 119717865 4597466 3866012..3866659 1 NC_008699.1 PFAM: regulatory protein, LuxR; response regulator receiver; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sco:SCO6667 two-component regulator; two component LuxR family transcriptional regulator 3866659 4597466 Noca_3643 Nocardioides sp. JS614 two component LuxR family transcriptional regulator YP_924830.1 3866012 D 196162 CDS YP_924831.1 119717866 4595756 3866785..3868881 1 NC_008699.1 KEGG: bcn:Bcen_6533 outer membrane autotransporter barrel; hypothetical protein 3868881 4595756 Noca_3644 Nocardioides sp. JS614 hypothetical protein YP_924831.1 3866785 D 196162 CDS YP_924832.1 119717867 4595757 complement(3868895..3870397) 1 NC_008699.1 KEGG: sma:SAV5000 putative inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase; inosine-5'-monophosphate dehydrogenase 3870397 4595757 Noca_3645 Nocardioides sp. JS614 inosine-5'-monophosphate dehydrogenase YP_924832.1 3868895 R 196162 CDS YP_924833.1 119717868 4595758 complement(3870577..3872202) 1 NC_008699.1 TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: sma:SAV4992 putative class I heat-shock protein; chaperonin GroEL 3872202 4595758 Noca_3646 Nocardioides sp. JS614 chaperonin GroEL YP_924833.1 3870577 R 196162 CDS YP_924834.1 119717869 4595759 complement(3872299..3872592) 1 NC_008699.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 3872592 groES 4595759 groES Nocardioides sp. JS614 co-chaperonin GroES YP_924834.1 3872299 R 196162 CDS YP_924835.1 119717870 4595760 3872789..3873955 1 NC_008699.1 KEGG: sco:SCO4758 hypothetical protein; hypothetical protein 3873955 4595760 Noca_3648 Nocardioides sp. JS614 hypothetical protein YP_924835.1 3872789 D 196162 CDS YP_924836.1 119717871 4595761 complement(3874134..3874760) 1 NC_008699.1 KEGG: cdi:DIP1163 hypothetical protein; hypothetical protein 3874760 4595761 Noca_3649 Nocardioides sp. JS614 hypothetical protein YP_924836.1 3874134 R 196162 CDS YP_924837.1 119717872 4595762 complement(3874935..3875558) 1 NC_008699.1 PFAM: beta-lactamase domain protein; KEGG: sco:SCO0740 hydrolase; beta-lactamase domain-containing protein 3875558 4595762 Noca_3650 Nocardioides sp. JS614 beta-lactamase domain-containing protein YP_924837.1 3874935 R 196162 CDS YP_924838.1 119717873 4595763 complement(3875558..3876655) 1 NC_008699.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sco:SCO0741 putative NAD/factor-dependent formaldehyde dehydrogenase; alcohol dehydrogenase 3876655 4595763 Noca_3651 Nocardioides sp. JS614 alcohol dehydrogenase YP_924838.1 3875558 R 196162 CDS YP_924839.1 119717874 4595764 complement(3876743..3877399) 1 NC_008699.1 hypothetical protein 3877399 4595764 Noca_3652 Nocardioides sp. JS614 hypothetical protein YP_924839.1 3876743 R 196162 CDS YP_924840.1 119717875 4595765 complement(3877396..3878814) 1 NC_008699.1 KEGG: aba:Acid345_4298 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 3878814 4595765 Noca_3653 Nocardioides sp. JS614 2-nitropropane dioxygenase YP_924840.1 3877396 R 196162 CDS YP_924841.1 119717876 4595766 3878992..3879510 1 NC_008699.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sco:SCO4005 RNA polymerase sigma factor; sigma-70 factor 3879510 4595766 Noca_3654 Nocardioides sp. JS614 sigma-70 factor YP_924841.1 3878992 D 196162 CDS YP_924842.1 119717877 4595767 3879507..3880646 1 NC_008699.1 hypothetical protein 3880646 4595767 Noca_3655 Nocardioides sp. JS614 hypothetical protein YP_924842.1 3879507 D 196162 CDS YP_924843.1 119717878 4595768 3880705..3882864 1 NC_008699.1 PFAM: MMPL domain protein; KEGG: rha:RHA1_ro04933 membrane efflux protein; MMPL domain-containing protein 3882864 4595768 Noca_3656 Nocardioides sp. JS614 MMPL domain-containing protein YP_924843.1 3880705 D 196162 CDS YP_924844.1 119717879 4595769 complement(3882932..3883978) 1 NC_008699.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 3883978 4595769 Noca_3657 Nocardioides sp. JS614 putative DNA-binding/iron metalloprotein/AP endonuclease YP_924844.1 3882932 R 196162 CDS YP_924845.1 119717880 4595770 complement(3884110..3884559) 1 NC_008699.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: rha:RHA1_ro03337 probable leucine-responsive regulator; AsnC family transcriptional regulator 3884559 4595770 Noca_3658 Nocardioides sp. JS614 AsnC family transcriptional regulator YP_924845.1 3884110 R 196162 CDS YP_924846.1 119717881 4595771 3884595..3885296 1 NC_008699.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: sco:SCO3362 hypothetical protein; lysine exporter protein LysE/YggA 3885296 4595771 Noca_3659 Nocardioides sp. JS614 lysine exporter protein LysE/YggA YP_924846.1 3884595 D 196162 CDS YP_924847.1 119717882 4595772 complement(3885357..3885719) 1 NC_008699.1 TIGRFAM: death-on-curing family protein; PFAM: Death-on-curing protein; KEGG: rha:RHA1_ro05890 hypothetical protein; death-on-curing family protein 3885719 4595772 Noca_3660 Nocardioides sp. JS614 death-on-curing family protein YP_924847.1 3885357 R 196162 CDS YP_924848.1 119717883 4595773 complement(3885716..3885961) 1 NC_008699.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: rha:RHA1_ro05889 hypothetical protein; CopG/DNA-binding domain-containing protein 3885961 4595773 Noca_3661 Nocardioides sp. JS614 CopG/DNA-binding domain-containing protein YP_924848.1 3885716 R 196162 CDS YP_924849.1 119717884 4595774 complement(3886116..3886592) 1 NC_008699.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: tfu:Tfu_2603 ribosomal-protein-alanine acetyltransferase; 30S ribosomal protein S18 3886592 4595774 Noca_3662 Nocardioides sp. JS614 30S ribosomal protein S18 YP_924849.1 3886116 R 196162 CDS YP_924850.1 119717885 4595775 complement(3886589..3887227) 1 NC_008699.1 PFAM: peptidase M22, glycoprotease; KEGG: sco:SCO4750 hypothetical protein; peptidase M22, glycoprotease 3887227 4595775 Noca_3663 Nocardioides sp. JS614 peptidase M22, glycoprotease YP_924850.1 3886589 R 196162 CDS YP_924851.1 119717886 4595776 complement(3887533..3888180) 1 NC_008699.1 PFAM: regulatory protein, LuxR; KEGG: sma:SAV6477 two-component system response regulator; regulatory protein LuxR 3888180 4595776 Noca_3664 Nocardioides sp. JS614 regulatory protein LuxR YP_924851.1 3887533 R 196162 CDS YP_924852.1 119717887 4595777 complement(3888249..3889331) 1 NC_008699.1 KEGG: sco:SCO6709 hypothetical protein; hypothetical protein 3889331 4595777 Noca_3665 Nocardioides sp. JS614 hypothetical protein YP_924852.1 3888249 R 196162 CDS YP_924853.1 119717888 4595778 complement(3889528..3889830) 1 NC_008699.1 hypothetical protein 3889830 4595778 Noca_3666 Nocardioides sp. JS614 hypothetical protein YP_924853.1 3889528 R 196162 CDS YP_924854.1 119717889 4595779 complement(3889830..3891032) 1 NC_008699.1 PFAM: fatty acid desaturase; KEGG: rha:RHA1_ro01720 probable fatty acid desaturase; fatty acid desaturase 3891032 4595779 Noca_3667 Nocardioides sp. JS614 fatty acid desaturase YP_924854.1 3889830 R 196162 CDS YP_924855.1 119717890 4595780 complement(3891057..3892163) 1 NC_008699.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: nfa:nfa46020 putative oxidoreductase; ferredoxin 3892163 4595780 Noca_3668 Nocardioides sp. JS614 ferredoxin YP_924855.1 3891057 R 196162 CDS YP_924856.1 119717891 4595781 3892272..3892673 1 NC_008699.1 KEGG: sco:SCO6061 putative oxidoreductase; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; methionine-R-sulfoxide reductase 3892673 4595781 Noca_3669 Nocardioides sp. JS614 methionine-R-sulfoxide reductase YP_924856.1 3892272 D 196162 CDS YP_924857.1 119717892 4595782 complement(3892771..3893409) 1 NC_008699.1 hypothetical protein 3893409 4595782 Noca_3670 Nocardioides sp. JS614 hypothetical protein YP_924857.1 3892771 R 196162 CDS YP_924858.1 119717893 4595783 complement(3893483..3894205) 1 NC_008699.1 PFAM: Chlorite dismutase; KEGG: sma:SAV2221 hypothetical protein; chlorite dismutase 3894205 4595783 Noca_3671 Nocardioides sp. JS614 chlorite dismutase YP_924858.1 3893483 R 196162 CDS YP_924859.1 119717894 4595784 complement(3894320..3895702) 1 NC_008699.1 KEGG: sco:SCO6041 putative protoporphyrinogen oxidase; TIGRFAM: protoporphyrinogen oxidase; PFAM: amine oxidase; FAD dependent oxidoreductase; protoporphyrinogen oxidase 3895702 4595784 Noca_3672 Nocardioides sp. JS614 protoporphyrinogen oxidase YP_924859.1 3894320 R 196162 CDS YP_924860.1 119717895 4595785 3895764..3896738 1 NC_008699.1 KEGG: sma:SAV2224 lipoprotein; lipoprotein 3896738 4595785 Noca_3673 Nocardioides sp. JS614 lipoprotein YP_924860.1 3895764 D 196162 CDS YP_924861.1 119717896 4595786 complement(3896816..3897853) 1 NC_008699.1 KEGG: sco:SCO6031 uroporphyrinogen decarboxylase; TIGRFAM: uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); uroporphyrinogen decarboxylase 3897853 4595786 Noca_3674 Nocardioides sp. JS614 uroporphyrinogen decarboxylase YP_924861.1 3896816 R 196162 CDS YP_924862.1 119717897 4595787 3897925..3898554 1 NC_008699.1 KEGG: sma:SAV2229 hypothetical protein; hypothetical protein 3898554 4595787 Noca_3675 Nocardioides sp. JS614 hypothetical protein YP_924862.1 3897925 D 196162 CDS YP_924863.1 119717898 4595788 3898556..3899884 1 NC_008699.1 PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: sma:SAV2231 putative ribonuclease D; 3'-5' exonuclease 3899884 4595788 Noca_3676 Nocardioides sp. JS614 3'-5' exonuclease YP_924863.1 3898556 D 196162 CDS YP_924864.1 119717899 4595789 3899985..3900689 1 NC_008699.1 KEGG: mmc:Mmcs_4377 hypothetical protein; hypothetical protein 3900689 4595789 Noca_3677 Nocardioides sp. JS614 hypothetical protein YP_924864.1 3899985 D 196162 CDS YP_924865.1 119717900 4595790 3901098..3901766 1 NC_008699.1 KEGG: sme:SMa1134 hypothetical protein; hypothetical protein 3901766 4595790 Noca_3678 Nocardioides sp. JS614 hypothetical protein YP_924865.1 3901098 D 196162 CDS YP_924866.1 119717901 4595791 complement(3901958..3902680) 1 NC_008699.1 PFAM: inositol monophosphatase; KEGG: tfu:Tfu_1943 inositol-1(or 4)-monophosphatase; inositol-phosphate phosphatase 3902680 4595791 Noca_3679 Nocardioides sp. JS614 inositol-phosphate phosphatase YP_924866.1 3901958 R 196162 CDS YP_924867.1 119717902 4595792 complement(3902770..3903864) 1 NC_008699.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: mmc:Mmcs_2417 ABC transporter related; ABC transporter-like protein 3903864 4595792 Noca_3680 Nocardioides sp. JS614 ABC transporter-like protein YP_924867.1 3902770 R 196162 CDS YP_924868.1 119717903 4595793 complement(3903878..3904795) 1 NC_008699.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mmc:Mmcs_2418 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3904795 4595793 Noca_3681 Nocardioides sp. JS614 binding-protein-dependent transport system inner membrane protein YP_924868.1 3903878 R 196162 CDS YP_924869.1 119717904 4595794 complement(3904792..3905643) 1 NC_008699.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mmc:Mmcs_2419 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 3905643 4595794 Noca_3682 Nocardioides sp. JS614 binding-protein-dependent transport systems inner membrane component YP_924869.1 3904792 R 196162 CDS YP_924870.1 119717905 4597600 complement(3905693..3906991) 1 NC_008699.1 PFAM: extracellular solute-binding protein, family 1; KEGG: mmc:Mmcs_2420 extracellular solute-binding protein, family 1; extracellular solute-binding protein 3906991 4597600 Noca_3683 Nocardioides sp. JS614 extracellular solute-binding protein YP_924870.1 3905693 R 196162 CDS YP_924871.1 119717906 4597601 complement(3907078..3907848) 1 NC_008699.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mmc:Mmcs_2421 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3907848 4597601 Noca_3684 Nocardioides sp. JS614 short-chain dehydrogenase/reductase SDR YP_924871.1 3907078 R 196162 CDS YP_924872.1 119717907 4597602 complement(3907845..3909377) 1 NC_008699.1 PFAM: carbohydrate kinase, FGGY; KEGG: mmc:Mmcs_2422 carbohydrate kinase, FGGY; carbohydrate kinase 3909377 4597602 Noca_3685 Nocardioides sp. JS614 carbohydrate kinase YP_924872.1 3907845 R 196162 CDS YP_924873.1 119717908 4597603 complement(3909391..3910209) 1 NC_008699.1 PFAM: photosystem I assembly BtpA; KEGG: mmc:Mmcs_2423 photosystem I assembly BtpA; photosystem I assembly BtpA 3910209 4597603 Noca_3686 Nocardioides sp. JS614 photosystem I assembly BtpA YP_924873.1 3909391 R 196162 CDS YP_924874.1 119717909 4597604 3910350..3911129 1 NC_008699.1 PFAM: regulatory protein GntR, HTH; regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: mmc:Mmcs_2425 transcriptional regulator, DeoR family; regulatory protein DeoR 3911129 4597604 Noca_3687 Nocardioides sp. JS614 regulatory protein DeoR YP_924874.1 3910350 D 196162 CDS YP_924875.1 119717910 4597605 complement(3911251..3912651) 1 NC_008699.1 PFAM: extracellular solute-binding protein, family 1; KEGG: bcl:ABC3585 sugar ABC transporter substrate-binding protein; extracellular solute-binding protein 3912651 4597605 Noca_3688 Nocardioides sp. JS614 extracellular solute-binding protein YP_924875.1 3911251 R 196162 CDS YP_924876.1 119717911 4597606 3912784..3913560 1 NC_008699.1 hypothetical protein 3913560 4597606 Noca_3689 Nocardioides sp. JS614 hypothetical protein YP_924876.1 3912784 D 196162 CDS YP_924877.1 119717912 4597607 complement(3913651..3914028) 1 NC_008699.1 KEGG: mpa:MAP2218 hypothetical protein; hypothetical protein 3914028 4597607 Noca_3690 Nocardioides sp. JS614 hypothetical protein YP_924877.1 3913651 R 196162 CDS YP_924878.1 119717913 4597608 complement(3914222..3914791) 1 NC_008699.1 KEGG: lxx:Lxx18480 hypothetical protein; hypothetical protein 3914791 4597608 Noca_3691 Nocardioides sp. JS614 hypothetical protein YP_924878.1 3914222 R 196162 CDS YP_924879.1 119717914 4597609 complement(3914828..3918676) 1 NC_008699.1 KEGG: sco:SCO4092 ATP-dependent helicase; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases-like; ATP-dependent helicase HrpA 3918676 4597609 Noca_3692 Nocardioides sp. JS614 ATP-dependent helicase HrpA YP_924879.1 3914828 R 196162 CDS YP_924880.1 119717915 4597610 3918724..3920310 1 NC_008699.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: rha:RHA1_ro05813 probable 3-oxosteroid 1-dehydrogenase; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 3920310 4597610 Noca_3693 Nocardioides sp. JS614 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_924880.1 3918724 D 196162 CDS YP_924881.1 119717916 4597611 3920320..3921564 1 NC_008699.1 hypothetical protein 3921564 4597611 Noca_3694 Nocardioides sp. JS614 hypothetical protein YP_924881.1 3920320 D 196162 CDS YP_924882.1 119717917 4597612 3921640..3922350 1 NC_008699.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sma:SAV4198 putative two-component system response regulator; response regulator receiver 3922350 4597612 Noca_3695 Nocardioides sp. JS614 response regulator receiver YP_924882.1 3921640 D 196162 CDS YP_924883.1 119717918 4597613 3922347..3923756 1 NC_008699.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: sco:SCO4021 putative two component system histidine kinase; ATPase domain-containing protein 3923756 4597613 Noca_3696 Nocardioides sp. JS614 ATPase domain-containing protein YP_924883.1 3922347 D 196162 CDS YP_924884.1 119717919 4597614 complement(3923804..3924415) 1 NC_008699.1 PFAM: regulatory protein, TetR; KEGG: rha:RHA1_ro06009 probable transcriptional regulator, TetR family; regulatory protein TetR 3924415 4597614 Noca_3697 Nocardioides sp. JS614 regulatory protein TetR YP_924884.1 3923804 R 196162 CDS YP_924885.1 119717920 4597615 3924458..3926047 1 NC_008699.1 KEGG: nfa:nfa47010 putative monooxygenase; putative monooxygenase 3926047 4597615 Noca_3698 Nocardioides sp. JS614 putative monooxygenase YP_924885.1 3924458 D 196162 CDS YP_924886.1 119717921 4597616 3926044..3926886 1 NC_008699.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro06007 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 3926886 4597616 Noca_3699 Nocardioides sp. JS614 short-chain dehydrogenase/reductase SDR YP_924886.1 3926044 D 196162 CDS YP_924887.1 119717922 4597617 complement(3926896..3928317) 1 NC_008699.1 PFAM: protein of unknown function DUF1212; KEGG: rha:RHA1_ro04718 possible amino acid export carrier protein; hypothetical protein 3928317 4597617 Noca_3700 Nocardioides sp. JS614 hypothetical protein YP_924887.1 3926896 R 196162 CDS YP_924888.1 119717923 4597618 3928347..3928850 1 NC_008699.1 KEGG: sth:STH1763 hypothetical protein; hypothetical protein 3928850 4597618 Noca_3701 Nocardioides sp. JS614 hypothetical protein YP_924888.1 3928347 D 196162 CDS YP_924889.1 119717924 4597619 3928870..3930000 1 NC_008699.1 ATP-dependent carboxylate-amine ligase; carboxylate-amine ligase 3930000 4597619 Noca_3702 Nocardioides sp. JS614 carboxylate-amine ligase YP_924889.1 3928870 D 196162 CDS YP_924890.1 119717925 4597620 complement(3930069..3931157) 1 NC_008699.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 3931157 4597620 Noca_3703 Nocardioides sp. JS614 DNA polymerase IV YP_924890.1 3930069 R 196162 CDS YP_924891.1 119717926 4597621 complement(3931154..3932254) 1 NC_008699.1 KEGG: nfa:nfa53760 hypothetical protein; hypothetical protein 3932254 4597621 Noca_3704 Nocardioides sp. JS614 hypothetical protein YP_924891.1 3931154 R 196162 CDS YP_924892.1 119717927 4597622 3932414..3933763 1 NC_008699.1 PFAM: protein of unknown function RIO1; protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: lxx:Lxx00220 serine/threonine kinase; protein kinase 3933763 4597622 Noca_3705 Nocardioides sp. JS614 protein kinase YP_924892.1 3932414 D 196162 CDS YP_924893.1 119717928 4597623 3933845..3935263 1 NC_008699.1 PFAM: protein of unknown function UPF0089; KEGG: rha:RHA1_ro08645 hypothetical protein; diacylglycerol O-acyltransferase 3935263 4597623 Noca_3706 Nocardioides sp. JS614 diacylglycerol O-acyltransferase YP_924893.1 3933845 D 196162 CDS YP_924894.1 119717929 4597624 complement(3935260..3936438) 1 NC_008699.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: sat:SYN_01825 type III restriction-modification system methylation subunit; adenine-specific DNA-methyltransferase 3936438 4597624 Noca_3707 Nocardioides sp. JS614 adenine-specific DNA-methyltransferase YP_924894.1 3935260 R 196162 CDS YP_924895.1 119717930 4597625 3936805..3937362 1 NC_008699.1 PFAM: peptidase M10A and M12B, matrixin and adamalysin; peptidase M10A and M12B, matrixin and adamalysin 3937362 4597625 Noca_3708 Nocardioides sp. JS614 peptidase M10A and M12B, matrixin and adamalysin YP_924895.1 3936805 D 196162 CDS YP_924896.1 119717931 4597626 3937527..3939086 1 NC_008699.1 PFAM: peptidase S15; KEGG: nph:NP4164A hypothetical protein; peptidase S15 3939086 4597626 Noca_3709 Nocardioides sp. JS614 peptidase S15 YP_924896.1 3937527 D 196162 CDS YP_924897.1 119717932 4597627 3939106..3940368 1 NC_008699.1 KEGG: sth:STH163 hypothetical protein; similar to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase; exopolysaccharide biosynthesis protein-like 3940368 4597627 Noca_3710 Nocardioides sp. JS614 exopolysaccharide biosynthesis protein-like YP_924897.1 3939106 D 196162 CDS YP_924898.1 119717933 4597628 complement(3940350..3940799) 1 NC_008699.1 hypothetical protein 3940799 4597628 Noca_3711 Nocardioides sp. JS614 hypothetical protein YP_924898.1 3940350 R 196162 CDS YP_924899.1 119717934 4597629 3940856..3941422 1 NC_008699.1 PFAM: Uracil-DNA glycosylase superfamily; KEGG: rha:RHA1_ro05894 G/U mismatch-specific DNA glycosylase; G/U mismatch-specific uracil-DNA glycosylase 3941422 4597629 Noca_3712 Nocardioides sp. JS614 G/U mismatch-specific uracil-DNA glycosylase YP_924899.1 3940856 D 196162 CDS YP_924900.1 119717935 4597630 3941460..3942380 1 NC_008699.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: mca:MCA0612 UDP-glucose 4-epimerase; NAD-dependent epimerase/dehydratase 3942380 4597630 Noca_3713 Nocardioides sp. JS614 NAD-dependent epimerase/dehydratase YP_924900.1 3941460 D 196162 CDS YP_924901.1 119717936 4597631 complement(3942390..3942776) 1 NC_008699.1 hypothetical protein 3942776 4597631 Noca_3714 Nocardioides sp. JS614 hypothetical protein YP_924901.1 3942390 R 196162 CDS YP_924902.1 119717937 4597632 complement(3942924..3944237) 1 NC_008699.1 KEGG: mmc:Mmcs_1337 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 3944237 4597632 Noca_3715 Nocardioides sp. JS614 amidohydrolase YP_924902.1 3942924 R 196162 CDS YP_924903.1 119717938 4597633 complement(3944234..3944893) 1 NC_008699.1 PFAM: protein of unknown function UPF0126; KEGG: mmc:Mmcs_0767 protein of unknown function UPF0126; hypothetical protein 3944893 4597633 Noca_3716 Nocardioides sp. JS614 hypothetical protein YP_924903.1 3944234 R 196162 CDS YP_924904.1 119717939 4597634 complement(3945032..3946279) 1 NC_008699.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 3946279 glgC 4597634 glgC Nocardioides sp. JS614 glucose-1-phosphate adenylyltransferase YP_924904.1 3945032 R 196162 CDS YP_924905.1 119717940 4597635 3946332..3947525 1 NC_008699.1 TIGRFAM: glycogen synthase; PFAM: glycosyl transferase, group 1; KEGG: fal:FRAAL4552 putative glycosyl transferase; glycogen synthase 3947525 4597635 Noca_3718 Nocardioides sp. JS614 glycogen synthase YP_924905.1 3946332 D 196162 CDS YP_924906.1 119717941 4597636 3947662..3948093 1 NC_008699.1 hypothetical protein 3948093 4597636 Noca_3719 Nocardioides sp. JS614 hypothetical protein YP_924906.1 3947662 D 196162 CDS YP_924907.1 119717942 4597637 3948128..3948805 1 NC_008699.1 KEGG: nfa:nfa29830 hypothetical protein; hypothetical protein 3948805 4597637 Noca_3720 Nocardioides sp. JS614 hypothetical protein YP_924907.1 3948128 D 196162 CDS YP_924908.1 119717943 4598583 complement(3948790..3949170) 1 NC_008699.1 PFAM: protein of unknown function DUF427; KEGG: sme:SMb21379 hypothetical protein; hypothetical protein 3949170 4598583 Noca_3721 Nocardioides sp. JS614 hypothetical protein YP_924908.1 3948790 R 196162 CDS YP_924909.1 119717944 4598584 complement(3949253..3949735) 1 NC_008699.1 KEGG: mmc:Mmcs_5328 carbohydrate kinase, thermoresistant glucokinase; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase; gluconate kinase 3949735 4598584 Noca_3722 Nocardioides sp. JS614 gluconate kinase YP_924909.1 3949253 R 196162 CDS YP_924910.1 119717945 4598585 complement(3949745..3950398) 1 NC_008699.1 KEGG: sco:SCO0635 hypothetical protein; hypothetical protein 3950398 4598585 Noca_3723 Nocardioides sp. JS614 hypothetical protein YP_924910.1 3949745 R 196162 CDS YP_924911.1 119717946 4598586 complement(3950379..3951047) 1 NC_008699.1 KEGG: nfa:nfa6820 putative phosphodiesterase; putative phosphodiesterase 3951047 4598586 Noca_3724 Nocardioides sp. JS614 putative phosphodiesterase YP_924911.1 3950379 R 196162 CDS YP_924912.1 119717947 4598587 complement(3951086..3951604) 1 NC_008699.1 hypothetical protein 3951604 4598587 Noca_3725 Nocardioides sp. JS614 hypothetical protein YP_924912.1 3951086 R 196162 CDS YP_924913.1 119717948 4598588 3951715..3952866 1 NC_008699.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: mmc:Mmcs_5118 acyl-CoA dehydrogenase-like protein; acyl-CoA dehydrogenase domain-containing protein 3952866 4598588 Noca_3726 Nocardioides sp. JS614 acyl-CoA dehydrogenase domain-containing protein YP_924913.1 3951715 D 196162 CDS YP_924914.1 119717949 4598589 3952892..3954028 1 NC_008699.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rha:RHA1_ro01910 probable acyl CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 3954028 4598589 Noca_3727 Nocardioides sp. JS614 acyl-CoA dehydrogenase domain-containing protein YP_924914.1 3952892 D 196162 CDS YP_924915.1 119717950 4598590 3954151..3954405 1 NC_008699.1 hypothetical protein 3954405 4598590 Noca_3728 Nocardioides sp. JS614 hypothetical protein YP_924915.1 3954151 D 196162 CDS YP_924916.1 119717951 4598591 3954579..3954893 1 NC_008699.1 KEGG: mmc:Mmcs_1345 protein of unknown function DUF909; hypothetical protein 3954893 4598591 Noca_3729 Nocardioides sp. JS614 hypothetical protein YP_924916.1 3954579 D 196162 CDS YP_924917.1 119717952 4598592 3954893..3955195 1 NC_008699.1 KEGG: mmc:Mmcs_1344 putative EsaT-6 like protein 12 (hypothetical alanine rich protein); hypothetical protein 3955195 4598592 Noca_3730 Nocardioides sp. JS614 hypothetical protein YP_924917.1 3954893 D 196162 CDS YP_924918.1 119717953 4598593 3955192..3956562 1 NC_008699.1 KEGG: nfa:nfa42710 hypothetical protein; hypothetical protein 3956562 4598593 Noca_3731 Nocardioides sp. JS614 hypothetical protein YP_924918.1 3955192 D 196162 CDS YP_924919.1 119717954 4598594 3956576..3956860 1 NC_008699.1 hypothetical protein 3956860 4598594 Noca_3732 Nocardioides sp. JS614 hypothetical protein YP_924919.1 3956576 D 196162 CDS YP_924920.1 119717955 4598595 complement(3957163..3957483) 1 NC_008699.1 hypothetical protein 3957483 4598595 Noca_3733 Nocardioides sp. JS614 hypothetical protein YP_924920.1 3957163 R 196162 CDS YP_924921.1 119717956 4598596 3957505..3957957 1 NC_008699.1 hypothetical protein 3957957 4598596 Noca_3734 Nocardioides sp. JS614 hypothetical protein YP_924921.1 3957505 D 196162 CDS YP_924922.1 119717957 4598597 3958130..3958759 1 NC_008699.1 KEGG: fal:FRAAL2306 hypothetical protein; hypothetical protein 3958759 4598597 Noca_3735 Nocardioides sp. JS614 hypothetical protein YP_924922.1 3958130 D 196162 CDS YP_924923.1 119717958 4598598 3958756..3959091 1 NC_008699.1 KEGG: fra:Francci3_4441 conserved hypothetical protein; hypothetical protein 3959091 4598598 Noca_3736 Nocardioides sp. JS614 hypothetical protein YP_924923.1 3958756 D 196162 CDS YP_924924.1 119717959 4598599 3959106..3959597 1 NC_008699.1 KEGG: mpa:MAP3097 hypothetical protein; hypothetical protein 3959597 4598599 Noca_3737 Nocardioides sp. JS614 hypothetical protein YP_924924.1 3959106 D 196162 CDS YP_924925.1 119717960 4598600 complement(3959667..3960173) 1 NC_008699.1 hypothetical protein 3960173 4598600 Noca_3738 Nocardioides sp. JS614 hypothetical protein YP_924925.1 3959667 R 196162 CDS YP_924926.1 119717961 4598601 3960405..3961142 1 NC_008699.1 KEGG: mmc:Mmcs_4460 hypothetical protein; hypothetical protein 3961142 4598601 Noca_3739 Nocardioides sp. JS614 hypothetical protein YP_924926.1 3960405 D 196162 CDS YP_924927.1 119717962 4598602 complement(3961147..3961548) 1 NC_008699.1 KEGG: fra:Francci3_2396 conserved hypothetical protein; hypothetical protein 3961548 4598602 Noca_3740 Nocardioides sp. JS614 hypothetical protein YP_924927.1 3961147 R 196162 CDS YP_924928.1 119717963 4598603 complement(3961565..3962029) 1 NC_008699.1 hypothetical protein 3962029 4598603 Noca_3741 Nocardioides sp. JS614 hypothetical protein YP_924928.1 3961565 R 196162 CDS YP_924929.1 119717964 4598604 complement(3962104..3962454) 1 NC_008699.1 PFAM: regulatory protein, ArsR; KEGG: fra:Francci3_3239 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 3962454 4598604 Noca_3742 Nocardioides sp. JS614 ArsR family transcriptional regulator YP_924929.1 3962104 R 196162 CDS YP_924930.1 119717965 4598605 3962547..3963350 1 NC_008699.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rpd:RPD_3422 methyltransferase type 11; type 11 methyltransferase 3963350 4598605 Noca_3743 Nocardioides sp. JS614 type 11 methyltransferase YP_924930.1 3962547 D 196162 CDS YP_924931.1 119717966 4598606 3963347..3964438 1 NC_008699.1 TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: mmc:Mmcs_4522 arsenical-resistance protein; arsenical-resistance protein 3964438 4598606 Noca_3744 Nocardioides sp. JS614 arsenical-resistance protein YP_924931.1 3963347 D 196162 CDS YP_924932.1 119717967 4598607 3964435..3964878 1 NC_008699.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: sco:SCO6835 arsenate reductase; low molecular weight phosphotyrosine protein phosphatase 3964878 4598607 Noca_3745 Nocardioides sp. JS614 low molecular weight phosphotyrosine protein phosphatase YP_924932.1 3964435 D 196162 CDS YP_924933.1 119717968 4598608 complement(3964875..3968090) 1 NC_008699.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: rxy:Rxyl_0133 ATPase, P type cation/copper-transporter; heavy metal translocating P-type ATPase 3968090 4598608 Noca_3746 Nocardioides sp. JS614 heavy metal translocating P-type ATPase YP_924933.1 3964875 R 196162 CDS YP_924934.1 119717969 4598609 complement(3968095..3968304) 1 NC_008699.1 PFAM: Heavy metal transport/detoxification protein; KEGG: nfa:nfa49020 putative metal-binding protein; heavy metal transport/detoxification protein 3968304 4598609 Noca_3747 Nocardioides sp. JS614 heavy metal transport/detoxification protein YP_924934.1 3968095 R 196162 CDS YP_924935.1 119717970 4598610 3968752..3969165 1 NC_008699.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: mbo:Mb1796 hypothetical protein; alkylhydroperoxidase 3969165 4598610 Noca_3748 Nocardioides sp. JS614 alkylhydroperoxidase YP_924935.1 3968752 D 196162 CDS YP_924936.1 119717971 4598611 complement(3969313..3970293) 1 NC_008699.1 PFAM: aldo/keto reductase; KEGG: tfu:Tfu_1674 putative oxidoreductase; aldo/keto reductase 3970293 4598611 Noca_3749 Nocardioides sp. JS614 aldo/keto reductase YP_924936.1 3969313 R 196162 CDS YP_924937.1 119717972 4598612 complement(3970323..3970865) 1 NC_008699.1 hypothetical protein 3970865 4598612 Noca_3750 Nocardioides sp. JS614 hypothetical protein YP_924937.1 3970323 R 196162 CDS YP_924938.1 119717973 4598613 3970900..3971247 1 NC_008699.1 KEGG: mpa:MAP1582c hypothetical protein; hypothetical protein 3971247 4598613 Noca_3751 Nocardioides sp. JS614 hypothetical protein YP_924938.1 3970900 D 196162 CDS YP_924939.1 119717974 4598614 complement(3971291..3971623) 1 NC_008699.1 KEGG: rha:RHA1_ro02506 possible suppressor protein DnaK; putative suppressor protein DnaK 3971623 4598614 Noca_3752 Nocardioides sp. JS614 putative suppressor protein DnaK YP_924939.1 3971291 R 196162 CDS YP_924940.1 119717975 4598615 complement(3971620..3972759) 1 NC_008699.1 RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; 23S rRNA methyluridine methyltransferase 3972759 rumB 4598615 rumB Nocardioides sp. JS614 23S rRNA methyluridine methyltransferase YP_924940.1 3971620 R 196162 CDS YP_924941.1 119717976 4598616 3972972..3975377 1 NC_008699.1 TIGRFAM: conserved repeat domain; PFAM: protein of unknown function DUF11; KEGG: rsp:RSP_3667 transcriptional regulator, AraC family with parallel beta-helix repeat; hypothetical protein 3975377 4598616 Noca_3754 Nocardioides sp. JS614 hypothetical protein YP_924941.1 3972972 D 196162 CDS YP_924942.1 119717977 4598617 3975452..3976807 1 NC_008699.1 KEGG: sma:SAV5466 hypothetical protein; hypothetical protein 3976807 4598617 Noca_3755 Nocardioides sp. JS614 hypothetical protein YP_924942.1 3975452 D 196162 CDS YP_924943.1 119717978 4598618 complement(3976841..3978034) 1 NC_008699.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate coenzyme A ligase 3978034 4598618 Noca_3756 Nocardioides sp. JS614 2-amino-3-ketobutyrate coenzyme A ligase YP_924943.1 3976841 R 196162 CDS YP_924944.1 119717979 4598619 complement(3978036..3979076) 1 NC_008699.1 converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase 3979076 tdh 4598619 tdh Nocardioides sp. JS614 L-threonine 3-dehydrogenase YP_924944.1 3978036 R 196162 CDS YP_924945.1 119717980 4598620 complement(3979126..3981861) 1 NC_008699.1 KEGG: sma:SAV2604 secreted protein; secreted protein 3981861 4598620 Noca_3758 Nocardioides sp. JS614 secreted protein YP_924945.1 3979126 R 196162 CDS YP_924946.1 119717981 4598621 complement(3981907..3983184) 1 NC_008699.1 PFAM: sodium/hydrogen exchanger; KEGG: rha:RHA1_ro01570 Na+/H+ antiporter; sodium/hydrogen exchanger 3983184 4598621 Noca_3759 Nocardioides sp. JS614 sodium/hydrogen exchanger YP_924946.1 3981907 R 196162 CDS YP_924947.1 119717982 4598622 3983280..3984590 1 NC_008699.1 KEGG: sma:SAV5466 hypothetical protein; hypothetical protein 3984590 4598622 Noca_3760 Nocardioides sp. JS614 hypothetical protein YP_924947.1 3983280 D 196162 CDS YP_924948.1 119717983 4597507 3984886..3985152 1 NC_008699.1 hypothetical protein 3985152 4597507 Noca_3761 Nocardioides sp. JS614 hypothetical protein YP_924948.1 3984886 D 196162 CDS YP_924949.1 119717984 4597508 3985173..3985607 1 NC_008699.1 KEGG: ade:Adeh_1681 PE-PGRS family protein; PE-PGRS family protein 3985607 4597508 Noca_3762 Nocardioides sp. JS614 PE-PGRS family protein YP_924949.1 3985173 D 196162 CDS YP_924950.1 119717985 4597509 complement(3985581..3985886) 1 NC_008699.1 PFAM: Excinuclease ABC, C subunit domain protein; KEGG: rpc:RPC_0376 excinuclease ABC, C subunit-like; excinuclease ABC subunit C 3985886 4597509 Noca_3763 Nocardioides sp. JS614 excinuclease ABC subunit C YP_924950.1 3985581 R 196162 CDS YP_924951.1 119717986 4597510 3986154..3986891 1 NC_008699.1 KEGG: mmc:Mmcs_4669 AAA ATPase containing von Willebrand factor type A (vWA) domain-like protein; hypothetical protein 3986891 4597510 Noca_3764 Nocardioides sp. JS614 hypothetical protein YP_924951.1 3986154 D 196162 CDS YP_924952.1 119717987 4597511 3986962..3987534 1 NC_008699.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sma:SAV4735 RNA polymerase ECF-subfamily sigma factor; sigma-70 region 4 domain-containing protein 3987534 4597511 Noca_3765 Nocardioides sp. JS614 sigma-70 region 4 domain-containing protein YP_924952.1 3986962 D 196162 CDS YP_924953.1 119717988 4597512 3987531..3988394 1 NC_008699.1 KEGG: hsa:93953 acidic repeat containing; hypothetical protein 3988394 4597512 Noca_3766 Nocardioides sp. JS614 hypothetical protein YP_924953.1 3987531 D 196162 CDS YP_924954.1 119717989 4597513 complement(3988361..3989515) 1 NC_008699.1 PFAM: fatty acid desaturase; KEGG: fal:FRAAL6454 linoleoyl-CoA desaturase (delta(6)-desaturase); fatty acid desaturase 3989515 4597513 Noca_3767 Nocardioides sp. JS614 fatty acid desaturase YP_924954.1 3988361 R 196162 CDS YP_924955.1 119717990 4597514 3989685..3990443 1 NC_008699.1 PFAM: regulatory proteins, IclR; KEGG: sco:SCO7618 transcriptional regulator; regulatory proteins IclR 3990443 4597514 Noca_3768 Nocardioides sp. JS614 regulatory proteins IclR YP_924955.1 3989685 D 196162 CDS YP_924956.1 119717991 4597515 3990516..3991550 1 NC_008699.1 PFAM: dehydrogenase, E1 component; KEGG: tte:TTE0688 Thiamine pyrophosphate-dependent dehydrogenases, E1 component alpha subunit; pyruvate dehydrogenase 3991550 4597515 Noca_3769 Nocardioides sp. JS614 pyruvate dehydrogenase YP_924956.1 3990516 D 196162 CDS YP_924957.1 119717992 4597516 3991561..3992604 1 NC_008699.1 PFAM: Transketolase, central region; Transketolase domain protein; KEGG: tte:TTE0689 Thiamine pyrophosphate-dependent dehydrogenases, E1 component beta subunit; transketolase, central region 3992604 4597516 Noca_3770 Nocardioides sp. JS614 transketolase, central region YP_924957.1 3991561 D 196162 CDS YP_924958.1 119717993 4597517 3992601..3992837 1 NC_008699.1 PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: rsp:RSP_0964 dihydrolipoamide acetyltransferase; biotin/lipoyl attachment domain-containing protein 3992837 4597517 Noca_3771 Nocardioides sp. JS614 biotin/lipoyl attachment domain-containing protein YP_924958.1 3992601 D 196162 CDS YP_924959.1 119717994 4597518 3993006..3994226 1 NC_008699.1 TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: pol:Bpro_1180 40-residue YVTN beta-propeller repeat; hypothetical protein 3994226 4597518 Noca_3772 Nocardioides sp. JS614 hypothetical protein YP_924959.1 3993006 D 196162 CDS YP_924960.1 119717995 4597519 3994331..3995125 1 NC_008699.1 PFAM: prolipoprotein diacylglyceryl transferase; KEGG: ctc:CTC00251 prolipoprotein diacylglyceryl transferase; prolipoprotein diacylglyceryl transferase 3995125 4597519 Noca_3773 Nocardioides sp. JS614 prolipoprotein diacylglyceryl transferase YP_924960.1 3994331 D 196162 CDS YP_924961.1 119717996 4597520 3995170..3995970 1 NC_008699.1 PFAM: peptidase M23B; KEGG: sco:SCO4108 probable peptidase; peptidase M23B 3995970 4597520 Noca_3774 Nocardioides sp. JS614 peptidase M23B YP_924961.1 3995170 D 196162 CDS YP_924962.1 119717997 4597521 complement(3995974..3996879) 1 NC_008699.1 PFAM: ABC transporter related; YHS domain protein; SMART: AAA ATPase; TRASH domain protein; KEGG: rpe:RPE_3321 ABC transporter related; ABC transporter-like protein 3996879 4597521 Noca_3775 Nocardioides sp. JS614 ABC transporter-like protein YP_924962.1 3995974 R 196162 CDS YP_924963.1 119717998 4597522 complement(3996876..3998018) 1 NC_008699.1 PFAM: protein of unknown function DUF214; KEGG: dvu:DVUA0023 ABC transporter, permease protein, putative; hypothetical protein 3998018 4597522 Noca_3776 Nocardioides sp. JS614 hypothetical protein YP_924963.1 3996876 R 196162 CDS YP_924964.1 119717999 4597523 complement(3998015..3999166) 1 NC_008699.1 PFAM: protein of unknown function DUF214; KEGG: bpm:BURPS1710b_A1034 ABC transporter, permease protein; hypothetical protein 3999166 4597523 Noca_3777 Nocardioides sp. JS614 hypothetical protein YP_924964.1 3998015 R 196162 CDS YP_924965.1 119718000 4597524 complement(3999194..3999532) 1 NC_008699.1 hypothetical protein 3999532 4597524 Noca_3778 Nocardioides sp. JS614 hypothetical protein YP_924965.1 3999194 R 196162 CDS YP_924966.1 119718001 4597525 complement(3999529..3999774) 1 NC_008699.1 KEGG: rha:RHA1_ro11211 hypothetical protein; hypothetical protein 3999774 4597525 Noca_3779 Nocardioides sp. JS614 hypothetical protein YP_924966.1 3999529 R 196162 CDS YP_924967.1 119718002 4597526 complement(3999907..4000272) 1 NC_008699.1 hypothetical protein 4000272 4597526 Noca_3780 Nocardioides sp. JS614 hypothetical protein YP_924967.1 3999907 R 196162 CDS YP_924968.1 119718003 4597527 complement(4000346..4000636) 1 NC_008699.1 KEGG: fra:Francci3_2227 conserved hypothetical protein; hypothetical protein 4000636 4597527 Noca_3781 Nocardioides sp. JS614 hypothetical protein YP_924968.1 4000346 R 196162 CDS YP_924969.1 119718004 4597528 4000718..4001611 1 NC_008699.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rha:RHA1_ro11203 response regulator, two-component system; response regulator receiver 4001611 4597528 Noca_3782 Nocardioides sp. JS614 response regulator receiver YP_924969.1 4000718 D 196162 CDS YP_924970.1 119718005 4597529 4001774..4002100 1 NC_008699.1 PFAM: glutaredoxin 2; glutaredoxin 4002100 4597529 Noca_3783 Nocardioides sp. JS614 glutaredoxin YP_924970.1 4001774 D 196162 CDS YP_924971.1 119718006 4597530 4002093..4003046 1 NC_008699.1 PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: rxy:Rxyl_1821 cytochrome c biogenesis protein, transmembrane region; cytochrome c biogenesis protein, transmembrane region 4003046 4597530 Noca_3784 Nocardioides sp. JS614 cytochrome c biogenesis protein, transmembrane region YP_924971.1 4002093 D 196162 CDS YP_924972.1 119718007 4597531 4003059..4003682 1 NC_008699.1 PFAM: Redoxin domain protein; KEGG: ttj:TTHA1300 bacterioferritin comigratory protein, thiol peroxidase, putative; redoxin domain-containing protein 4003682 4597531 Noca_3785 Nocardioides sp. JS614 redoxin domain-containing protein YP_924972.1 4003059 D 196162 CDS YP_924973.1 119718008 4597532 4003789..4004100 1 NC_008699.1 PFAM: protein of unknown function DUF156; KEGG: rha:RHA1_ro11208 hypothetical protein; hypothetical protein 4004100 4597532 Noca_3786 Nocardioides sp. JS614 hypothetical protein YP_924973.1 4003789 D 196162 CDS YP_924974.1 119718009 4597533 4004327..4004545 1 NC_008699.1 PFAM: Heavy metal transport/detoxification protein; KEGG: rha:RHA1_ro11206 Cu(2+)-exporting ATPase; heavy metal transport/detoxification protein 4004545 4597533 Noca_3787 Nocardioides sp. JS614 heavy metal transport/detoxification protein YP_924974.1 4004327 D 196162 CDS YP_924975.1 119718010 4597534 4004575..4006932 1 NC_008699.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: rha:RHA1_ro11213 probable copper resistance transporter, ATPase component; heavy metal translocating P-type ATPase 4006932 4597534 Noca_3788 Nocardioides sp. JS614 heavy metal translocating P-type ATPase YP_924975.1 4004575 D 196162 CDS YP_924976.1 119718011 4597535 4007143..4008918 1 NC_008699.1 PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; SMART: Animal peptidoglycan recognition protein PGRP; KEGG: sco:SCO3040 secreted protein; N-acetylmuramoyl-L-alanine amidase 4008918 4597535 Noca_3789 Nocardioides sp. JS614 N-acetylmuramoyl-L-alanine amidase YP_924976.1 4007143 D 196162 CDS YP_924977.1 119718012 4597536 4008956..4009546 1 NC_008699.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mpa:MAP0199 hypothetical protein; type 11 methyltransferase 4009546 4597536 Noca_3790 Nocardioides sp. JS614 type 11 methyltransferase YP_924977.1 4008956 D 196162 CDS YP_924978.1 119718013 4597537 4009543..4010001 1 NC_008699.1 hypothetical protein 4010001 4597537 Noca_3791 Nocardioides sp. JS614 hypothetical protein YP_924978.1 4009543 D 196162 CDS YP_924979.1 119718014 4597538 complement(4010018..4010281) 1 NC_008699.1 hypothetical protein 4010281 4597538 Noca_3792 Nocardioides sp. JS614 hypothetical protein YP_924979.1 4010018 R 196162 CDS YP_924980.1 119718015 4597539 4010724..4012670 1 NC_008699.1 PFAM: thiamineS protein; nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: pai:PAE2577 ferredoxin-nitrite reductase; assimilatory nitrite reductase (ferredoxin) 4012670 4597539 Noca_3793 Nocardioides sp. JS614 assimilatory nitrite reductase (ferredoxin) YP_924980.1 4010724 D 196162 CDS YP_924981.1 119718016 4597540 4012676..4013524 1 NC_008699.1 PFAM: phosphoadenosine phosphosulfate reductase; KEGG: pai:PAE2575 phosphoadenosine phosphosulfate reductase (PAPS reductase); phosphoadenylylsulfate reductase 4013524 4597540 Noca_3794 Nocardioides sp. JS614 phosphoadenylylsulfate reductase YP_924981.1 4012676 D 196162 CDS YP_924982.1 119718017 4597541 4013521..4014129 1 NC_008699.1 hypothetical protein 4014129 4597541 Noca_3795 Nocardioides sp. JS614 hypothetical protein YP_924982.1 4013521 D 196162 CDS YP_924983.1 119718018 4597542 4014187..4014354 1 NC_008699.1 hypothetical protein 4014354 4597542 Noca_3796 Nocardioides sp. JS614 hypothetical protein YP_924983.1 4014187 D 196162 CDS YP_924984.1 119718019 4599020 complement(4014351..4015448) 1 NC_008699.1 hypothetical protein 4015448 4599020 Noca_3797 Nocardioides sp. JS614 hypothetical protein YP_924984.1 4014351 R 196162 CDS YP_924985.1 119718020 4599021 4015675..4015989 1 NC_008699.1 hypothetical protein 4015989 4599021 Noca_3798 Nocardioides sp. JS614 hypothetical protein YP_924985.1 4015675 D 196162 CDS YP_924986.1 119718021 4599022 complement(4016036..4016293) 1 NC_008699.1 hypothetical protein 4016293 4599022 Noca_3799 Nocardioides sp. JS614 hypothetical protein YP_924986.1 4016036 R 196162 CDS YP_924987.1 119718022 4599023 4016438..4016626 1 NC_008699.1 KEGG: rha:RHA1_ro00019 hypothetical protein; hypothetical protein 4016626 4599023 Noca_3800 Nocardioides sp. JS614 hypothetical protein YP_924987.1 4016438 D 196162 CDS YP_924988.1 119718023 4599024 complement(4016660..4017124) 1 NC_008699.1 PFAM: protein of unknown function DUF1130; KEGG: rha:RHA1_ro08282 hypothetical protein; hypothetical protein 4017124 4599024 Noca_3801 Nocardioides sp. JS614 hypothetical protein YP_924988.1 4016660 R 196162 CDS YP_924989.1 119718024 4599025 complement(4017273..4017488) 1 NC_008699.1 hypothetical protein 4017488 4599025 Noca_3802 Nocardioides sp. JS614 hypothetical protein YP_924989.1 4017273 R 196162 CDS YP_924990.1 119718025 4599026 complement(4017647..4019506) 1 NC_008699.1 KEGG: fra:Francci3_3745 superfamily I DNA and RNA helicases and helicase subunits-like; hypothetical protein 4019506 4599026 Noca_3803 Nocardioides sp. JS614 hypothetical protein YP_924990.1 4017647 R 196162 CDS YP_924991.1 119718026 4599027 4019544..4020641 1 NC_008699.1 KEGG: rxy:Rxyl_2373 membrane protein-like protein; hypothetical protein 4020641 4599027 Noca_3804 Nocardioides sp. JS614 hypothetical protein YP_924991.1 4019544 D 196162 CDS YP_924992.1 119718027 4599028 complement(4020718..4021419) 1 NC_008699.1 SMART: protein of unknown function SprT; KEGG: lxx:Lxx20670 hypothetical protein; hypothetical protein 4021419 4599028 Noca_3805 Nocardioides sp. JS614 hypothetical protein YP_924992.1 4020718 R 196162 CDS YP_924993.1 119718028 4599029 complement(4021522..4022514) 1 NC_008699.1 PFAM: ERCC4 domain protein; KEGG: mbo:Mb2558 hypothetical protein; ERCC4 domain-containing protein 4022514 4599029 Noca_3806 Nocardioides sp. JS614 ERCC4 domain-containing protein YP_924993.1 4021522 R 196162 CDS YP_924994.1 119718029 4599030 complement(4022533..4023732) 1 NC_008699.1 TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase, class V; KEGG: sco:SCO1054 aminotransferase; cysteine desulfurase 4023732 4599030 Noca_3807 Nocardioides sp. JS614 cysteine desulfurase YP_924994.1 4022533 R 196162 CDS YP_924995.1 119718030 4599031 complement(4023779..4024774) 1 NC_008699.1 KEGG: fal:FRAAL5342 hypothetical protein; putative DNA helicase II homolog; hypothetical protein 4024774 4599031 Noca_3808 Nocardioides sp. JS614 hypothetical protein YP_924995.1 4023779 R 196162 CDS YP_924996.1 119718031 4599032 4025003..4028104 1 NC_008699.1 PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sco:SCO2863 helicase; type III restriction enzyme, res subunit 4028104 4599032 Noca_3809 Nocardioides sp. JS614 type III restriction enzyme, res subunit YP_924996.1 4025003 D 196162 CDS YP_924997.1 119718032 4599033 4028263..4029480 1 NC_008699.1 PFAM: BRCT domain protein; Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: tfu:Tfu_0714 exonuclease; exonuclease 4029480 4599033 Noca_3810 Nocardioides sp. JS614 exonuclease YP_924997.1 4028263 D 196162 CDS YP_924998.1 119718033 4599034 complement(4029737..4032607) 1 NC_008699.1 catalyzes the reduction of ribonucleotides to deoxyribonucleotides; the rate-limiting step in dNTP synthesis; vitamin B12-dependent ribonucleotide reductase 4032607 4599034 Noca_3811 Nocardioides sp. JS614 vitamin B12-dependent ribonucleotide reductase YP_924998.1 4029737 R 196162 CDS YP_924999.1 119718034 4599035 complement(4032748..4033266) 1 NC_008699.1 PFAM: ATP-cone domain protein; KEGG: tfu:Tfu_2150 hypothetical protein; ATP-cone domain-containing protein 4033266 4599035 Noca_3812 Nocardioides sp. JS614 ATP-cone domain-containing protein YP_924999.1 4032748 R 196162 CDS YP_925000.1 119718035 4595878 4033847..4034620 1 NC_008699.1 PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: mmc:Mmcs_1281 RNA polymerase, sigma 28 subunit; sigma-70 region 2 domain-containing protein 4034620 4595878 Noca_3813 Nocardioides sp. JS614 sigma-70 region 2 domain-containing protein YP_925000.1 4033847 D 196162 CDS YP_925001.1 119718036 4595879 4034683..4035132 1 NC_008699.1 hypothetical protein 4035132 4595879 Noca_3814 Nocardioides sp. JS614 hypothetical protein YP_925001.1 4034683 D 196162 CDS YP_925002.1 119718037 4595880 complement(4035388..4035744) 1 NC_008699.1 PFAM: Peptidoglycan-binding LysM; KEGG: fra:Francci3_3509 peptidoglycan-binding LysM; peptidoglycan-binding LysM 4035744 4595880 Noca_3815 Nocardioides sp. JS614 peptidoglycan-binding LysM YP_925002.1 4035388 R 196162 CDS YP_925003.1 119718038 4595881 complement(4035962..4036648) 1 NC_008699.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dar:Daro_1357 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 4036648 4595881 Noca_3816 Nocardioides sp. JS614 short-chain dehydrogenase/reductase SDR YP_925003.1 4035962 R 196162 CDS YP_925004.1 119718039 4595882 4036856..4037596 1 NC_008699.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 4037596 4595882 Noca_3817 Nocardioides sp. JS614 LexA repressor YP_925004.1 4036856 D 196162 CDS YP_925005.1 119718040 4595883 4037660..4038607 1 NC_008699.1 KEGG: sco:SCO2807 integral membrane protein; integral membrane protein 4038607 4595883 Noca_3818 Nocardioides sp. JS614 integral membrane protein YP_925005.1 4037660 D 196162 CDS YP_925006.1 119718041 4595884 4038844..4040415 1 NC_008699.1 PFAM: Alkaline phosphatase; KEGG: sco:SCO2068 secreted alkaline phosphatase; alkaline phosphatase 4040415 4595884 Noca_3819 Nocardioides sp. JS614 alkaline phosphatase YP_925006.1 4038844 D 196162 CDS YP_925007.1 119718042 4595885 4040538..4041734 1 NC_008699.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: pgi:PG0126 type I phosphodiesterase/nucleotide pyrophosphatase family protein; type I phosphodiesterase/nucleotide pyrophosphatase 4041734 4595885 Noca_3820 Nocardioides sp. JS614 type I phosphodiesterase/nucleotide pyrophosphatase YP_925007.1 4040538 D 196162 CDS YP_925008.1 119718043 4595886 4041731..4042258 1 NC_008699.1 hypothetical protein 4042258 4595886 Noca_3821 Nocardioides sp. JS614 hypothetical protein YP_925008.1 4041731 D 196162 CDS YP_925009.1 119718044 4595887 4042263..4043735 1 NC_008699.1 KEGG: mxa:MXAN_6640 hypothetical protein; hypothetical protein 4043735 4595887 Noca_3822 Nocardioides sp. JS614 hypothetical protein YP_925009.1 4042263 D 196162 CDS YP_925010.1 119718045 4595888 4043771..4045360 1 NC_008699.1 KEGG: mxa:MXAN_6640 hypothetical protein; hypothetical protein 4045360 4595888 Noca_3823 Nocardioides sp. JS614 hypothetical protein YP_925010.1 4043771 D 196162 CDS YP_925011.1 119718046 4595889 complement(4045353..4047383) 1 NC_008699.1 SMART: helicase c2; DEAD-like helicases-like; KEGG: sma:SAV2464 putative ATP-dependent helicase; helicase c2 4047383 4595889 Noca_3824 Nocardioides sp. JS614 helicase c2 YP_925011.1 4045353 R 196162 CDS YP_925012.1 119718047 4595890 complement(4047528..4048001) 1 NC_008699.1 hypothetical protein 4048001 4595890 Noca_3825 Nocardioides sp. JS614 hypothetical protein YP_925012.1 4047528 R 196162 CDS YP_925013.1 119718048 4595891 4048052..4048738 1 NC_008699.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sma:SAV5250 two-component system response regulator; response regulator receiver 4048738 4595891 Noca_3826 Nocardioides sp. JS614 response regulator receiver YP_925013.1 4048052 D 196162 CDS YP_925014.1 119718049 4595892 4048750..4050027 1 NC_008699.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: sco:SCO2800 two component system histidine kinase; ATPase domain-containing protein 4050027 4595892 Noca_3827 Nocardioides sp. JS614 ATPase domain-containing protein YP_925014.1 4048750 D 196162 CDS YP_925015.1 119718050 4595893 4050622..4051041 1 NC_008699.1 KEGG: cef:CE0820 hypothetical protein; hypothetical protein 4051041 4595893 Noca_3828 Nocardioides sp. JS614 hypothetical protein YP_925015.1 4050622 D 196162 CDS YP_925016.1 119718051 4595894 4051046..4051987 1 NC_008699.1 PFAM: ApbE family lipoprotein; KEGG: fal:FRAAL3949 putative thiamine biosynthesis lipoprotein, ApbE-like; ApbE family lipoprotein 4051987 4595894 Noca_3829 Nocardioides sp. JS614 ApbE family lipoprotein YP_925016.1 4051046 D 196162 CDS YP_925017.1 119718052 4595895 4051984..4052571 1 NC_008699.1 PFAM: Ferric reductase domain protein transmembrane component, N-terminal domain; KEGG: fra:Francci3_2586 putative integral membrane protein; ferric reductase domain-containing protein 4052571 4595895 Noca_3830 Nocardioides sp. JS614 ferric reductase domain-containing protein YP_925017.1 4051984 D 196162 CDS YP_925018.1 119718053 4595896 4052568..4053806 1 NC_008699.1 PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: fra:Francci3_2587 respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; respiratory-chain NADH dehydrogenase domain-containing protein 4053806 4595896 Noca_3831 Nocardioides sp. JS614 respiratory-chain NADH dehydrogenase domain-containing protein YP_925018.1 4052568 D 196162 CDS YP_925019.1 119718054 4595897 4053803..4053997 1 NC_008699.1 KEGG: fra:Francci3_2588 hypothetical protein; hypothetical protein 4053997 4595897 Noca_3832 Nocardioides sp. JS614 hypothetical protein YP_925019.1 4053803 D 196162 CDS YP_925020.1 119718055 4595900 complement(4054562..4055278) 1 NC_008699.1 hypothetical protein 4055278 4595900 Noca_3835 Nocardioides sp. JS614 hypothetical protein YP_925020.1 4054562 R 196162 CDS YP_925021.1 119718056 4595901 4055368..4056264 1 NC_008699.1 PFAM: alpha/beta hydrolase fold; KEGG: sma:SAV5711 hydrolase; alpha/beta hydrolase fold protein 4056264 4595901 Noca_3836 Nocardioides sp. JS614 alpha/beta hydrolase fold protein YP_925021.1 4055368 D 196162 CDS YP_925022.1 119718057 4595902 complement(4056426..4057907) 1 NC_008699.1 PFAM: GTP-binding protein, HSR1-related; KEGG: sma:SAV2470 putative ATP/GTP-binding protein; HSR1-like GTP-binding protein 4057907 4595902 Noca_3837 Nocardioides sp. JS614 HSR1-like GTP-binding protein YP_925022.1 4056426 R 196162 CDS YP_925023.1 119718058 4595903 4057991..4060474 1 NC_008699.1 PFAM: FAD dependent oxidoreductase; glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein, C-terminal barrel; KEGG: sit:TM1040_0434 FAD dependent oxidoreductase; FAD dependent oxidoreductase 4060474 4595903 Noca_3838 Nocardioides sp. JS614 FAD dependent oxidoreductase YP_925023.1 4057991 D 196162 CDS YP_925024.1 119718059 4595904 4060471..4061052 1 NC_008699.1 KEGG: dge:Dgeo_2867 phosphoribulokinase/uridine kinase; phosphoribulokinase/uridine kinase 4061052 4595904 Noca_3839 Nocardioides sp. JS614 phosphoribulokinase/uridine kinase YP_925024.1 4060471 D 196162 CDS YP_925025.1 119718060 4595905 complement(4061142..4061930) 1 NC_008699.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: tfu:Tfu_0275 putative short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 4061930 4595905 Noca_3840 Nocardioides sp. JS614 short-chain dehydrogenase/reductase SDR YP_925025.1 4061142 R 196162 CDS YP_925026.1 119718061 4595906 complement(4061990..4062829) 1 NC_008699.1 PFAM: diaminopimelate epimerase; KEGG: sma:SAV2473 putative diaminopimelate epimerase; diaminopimelate epimerase 4062829 4595906 Noca_3841 Nocardioides sp. JS614 diaminopimelate epimerase YP_925026.1 4061990 R 196162 CDS YP_925027.1 119718062 4595907 complement(4062826..4063383) 1 NC_008699.1 KEGG: mmc:Mmcs_0215 bifunctional deaminase-reductase-like protein; bifunctional deaminase-reductase-like protein 4063383 4595907 Noca_3842 Nocardioides sp. JS614 bifunctional deaminase-reductase-like protein YP_925027.1 4062826 R 196162 CDS YP_925028.1 119718063 4595908 complement(4063380..4064312) 1 NC_008699.1 KEGG: sco:SCO5791 putative tRNA delta(2)-isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; tRNA delta(2)-isopentenylpyrophosphate transferase 4064312 4595908 Noca_3843 Nocardioides sp. JS614 tRNA delta(2)-isopentenylpyrophosphate transferase YP_925028.1 4063380 R 196162 CDS YP_925029.1 119718064 4595909 4064766..4065224 1 NC_008699.1 PFAM: NUDIX hydrolase; KEGG: fra:Francci3_2547 NUDIX hydrolase; NUDIX hydrolase 4065224 4595909 Noca_3844 Nocardioides sp. JS614 NUDIX hydrolase YP_925029.1 4064766 D 196162 CDS YP_925030.1 119718065 4595910 4065239..4065502 1 NC_008699.1 hypothetical protein 4065502 4595910 Noca_3845 Nocardioides sp. JS614 hypothetical protein YP_925030.1 4065239 D 196162 CDS YP_925031.1 119718066 4595911 4065499..4065810 1 NC_008699.1 hypothetical protein 4065810 4595911 Noca_3846 Nocardioides sp. JS614 hypothetical protein YP_925031.1 4065499 D 196162 CDS YP_925032.1 119718067 4595912 complement(4065829..4067319) 1 NC_008699.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 4067319 4595912 Noca_3847 Nocardioides sp. JS614 (dimethylallyl)adenosine tRNA methylthiotransferase YP_925032.1 4065829 R 196162 CDS YP_925033.1 119718068 4595913 4067374..4067730 1 NC_008699.1 KEGG: rha:RHA1_ro05927 hypothetical protein; hypothetical protein 4067730 4595913 Noca_3848 Nocardioides sp. JS614 hypothetical protein YP_925033.1 4067374 D 196162 CDS YP_925034.1 119718069 4595914 4067748..4069241 1 NC_008699.1 PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: sco:SCO4428 putative secreted protein; phosphotransferase domain-containing protein 4069241 4595914 Noca_3849 Nocardioides sp. JS614 phosphotransferase domain-containing protein YP_925034.1 4067748 D 196162 CDS YP_925035.1 119718070 4595915 complement(4069225..4069689) 1 NC_008699.1 KEGG: abo:ABO_1590 hypothetical protein; hypothetical protein 4069689 4595915 Noca_3850 Nocardioides sp. JS614 hypothetical protein YP_925035.1 4069225 R 196162 CDS YP_925036.1 119718071 4597986 complement(4069801..4070685) 1 NC_008699.1 PFAM: PASTA domain containing protein; protein PASTA domain-containing protein 4070685 4597986 Noca_3851 Nocardioides sp. JS614 protein PASTA domain-containing protein YP_925036.1 4069801 R 196162 CDS YP_925037.1 119718072 4597987 complement(4070751..4071560) 1 NC_008699.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sma:SAV3570 putative trans-aconitate methyltransferase; trans-aconitate 2-methyltransferase 4071560 4597987 Noca_3852 Nocardioides sp. JS614 trans-aconitate 2-methyltransferase YP_925037.1 4070751 R 196162 CDS YP_925038.1 119718073 4597988 4071627..4072115 1 NC_008699.1 PFAM: regulatory protein, MarR; KEGG: sco:SCO3133 MarR-family regulator; regulatory protein MarR 4072115 4597988 Noca_3853 Nocardioides sp. JS614 regulatory protein MarR YP_925038.1 4071627 D 196162 CDS YP_925039.1 119718074 4597989 complement(4072146..4073981) 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tfu:Tfu_0409 ABC transporter, ATP-binding subunit; ABC transporter-like protein 4073981 4597989 Noca_3854 Nocardioides sp. JS614 ABC transporter-like protein YP_925039.1 4072146 R 196162 CDS YP_925040.1 119718075 4597990 complement(4073974..4074867) 1 NC_008699.1 catalyzes the phosphorylation of 4-diphosphocytidyl-2-C-methyl-D-erythritol in the nonmevalonate pathway of isoprenoid biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 4074867 4597990 Noca_3855 Nocardioides sp. JS614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_925040.1 4073974 R 196162 CDS YP_925041.1 119718076 4597991 complement(4074870..4075763) 1 NC_008699.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 4075763 ksgA 4597991 ksgA Nocardioides sp. JS614 dimethyladenosine transferase YP_925041.1 4074870 R 196162 CDS YP_925042.1 119718077 4597992 complement(4075819..4076982) 1 NC_008699.1 PFAM: protein of unknown function DUF348; Transglycosylase domain protein; G5 domain protein; KEGG: nfa:nfa49040 hypothetical protein; transglycosylase domain-containing protein 4076982 4597992 Noca_3857 Nocardioides sp. JS614 transglycosylase domain-containing protein YP_925042.1 4075819 R 196162 CDS YP_925043.1 119718078 4597993 complement(4077193..4078020) 1 NC_008699.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: sco:SCO3151 putative deoxyribonuclease; TatD family hydrolase 4078020 4597993 Noca_3858 Nocardioides sp. JS614 TatD family hydrolase YP_925043.1 4077193 R 196162 CDS YP_925044.1 119718079 4597994 complement(4078017..4078853) 1 NC_008699.1 PFAM: alpha/beta hydrolase fold; KEGG: rha:RHA1_ro01528 possible epoxide hydrolase; alpha/beta hydrolase fold protein 4078853 4597994 Noca_3859 Nocardioides sp. JS614 alpha/beta hydrolase fold protein YP_925044.1 4078017 R 196162 CDS YP_925045.1 119718080 4597995 complement(4078856..4079698) 1 NC_008699.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: sma:SAV3591 putative tetrapyrrole methylase; uroporphyrin-III C/tetrapyrrole methyltransferase 4079698 4597995 Noca_3860 Nocardioides sp. JS614 uroporphyrin-III C/tetrapyrrole methyltransferase YP_925045.1 4078856 R 196162 CDS YP_925046.1 119718081 4597996 4079765..4081390 1 NC_008699.1 PFAM: glycosyl transferase, family 39; KEGG: pac:PPA0523 putative dolichyl-phosphate-mannose-protein mannosyltransferase; glycosyl transferase family protein 4081390 4597996 Noca_3861 Nocardioides sp. JS614 glycosyl transferase family protein YP_925046.1 4079765 D 196162 CDS YP_925047.1 119718082 4597997 complement(4081595..4082203) 1 NC_008699.1 PFAM: regulatory protein, TetR; KEGG: nfa:nfa34140 putative transcriptional regulator; regulatory protein TetR 4082203 4597997 Noca_3862 Nocardioides sp. JS614 regulatory protein TetR YP_925047.1 4081595 R 196162 CDS YP_925048.1 119718083 4597998 4082251..4083003 1 NC_008699.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 4083003 fabG 4597998 fabG Nocardioides sp. JS614 3-ketoacyl-ACP reductase YP_925048.1 4082251 D 196162 CDS YP_925049.1 119718084 4597999 4083003..4083821 1 NC_008699.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sco:SCO1692 oxidoreductase; short-chain dehydrogenase/reductase SDR 4083821 4597999 Noca_3864 Nocardioides sp. JS614 short-chain dehydrogenase/reductase SDR YP_925049.1 4083003 D 196162 CDS YP_925050.1 119718085 4598000 4083818..4084870 1 NC_008699.1 PFAM: aminoglycoside phosphotransferase; KEGG: nfa:nfa34090 putative phosphotransferase; aminoglycoside phosphotransferase 4084870 4598000 Noca_3865 Nocardioides sp. JS614 aminoglycoside phosphotransferase YP_925050.1 4083818 D 196162 CDS YP_925051.1 119718086 4598001 4084872..4086095 1 NC_008699.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: nfa:nfa34080 putative acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 4086095 4598001 Noca_3866 Nocardioides sp. JS614 acyl-CoA dehydrogenase domain-containing protein YP_925051.1 4084872 D 196162 CDS YP_925052.1 119718087 4598002 4086264..4087196 1 NC_008699.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: bur:Bcep18194_C6777 lipolytic enzyme; alpha/beta hydrolase domain-containing protein 4087196 4598002 Noca_3867 Nocardioides sp. JS614 alpha/beta hydrolase domain-containing protein YP_925052.1 4086264 D 196162 CDS YP_925053.1 119718088 4598003 4087569..4088051 1 NC_008699.1 PFAM: DGPFAETKE family protein; KEGG: sco:SCO4453 hypothetical protein; DGPFAETKE family protein 4088051 4598003 Noca_3868 Nocardioides sp. JS614 DGPFAETKE family protein YP_925053.1 4087569 D 196162 CDS YP_925054.1 119718089 4598004 4088066..4089199 1 NC_008699.1 PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: sco:SCO4452 RNA polymerase sigma factor; sigma-70 region 2 domain-containing protein 4089199 4598004 Noca_3869 Nocardioides sp. JS614 sigma-70 region 2 domain-containing protein YP_925054.1 4088066 D 196162 CDS YP_925055.1 119718090 4598005 complement(4089165..4089782) 1 NC_008699.1 PFAM: putative RNA methylase; methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: pac:PPA1810 hypothetical protein; methyltransferase small 4089782 4598005 Noca_3870 Nocardioides sp. JS614 methyltransferase small YP_925055.1 4089165 R 196162 CDS YP_925056.1 119718091 4598006 complement(4089775..4090581) 1 NC_008699.1 KEGG: tfu:Tfu_2616 tRNA pseudouridine synthase; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; tRNA pseudouridine synthase A 4090581 4598006 Noca_3871 Nocardioides sp. JS614 tRNA pseudouridine synthase A YP_925056.1 4089775 R 196162 CDS YP_925057.1 119718092 4598007 complement(4090699..4091601) 1 NC_008699.1 PFAM: PfkB domain protein; KEGG: rha:RHA1_ro02811 fructokinase; ribokinase-like domain-containing protein 4091601 4598007 Noca_3872 Nocardioides sp. JS614 ribokinase-like domain-containing protein YP_925057.1 4090699 R 196162 CDS YP_925058.1 119718093 4598008 4091643..4092002 1 NC_008699.1 PFAM: regulatory protein GntR, HTH; KEGG: nfa:nfa49100 putative transcriptional regulator; GntR family transcriptional regulator 4092002 4598008 Noca_3873 Nocardioides sp. JS614 GntR family transcriptional regulator YP_925058.1 4091643 D 196162 CDS YP_925059.1 119718094 4598009 complement(4092090..4092698) 1 NC_008699.1 PFAM: ribosomal protein L17; KEGG: mmc:Mmcs_1114 ribosomal protein L17; 50S ribosomal protein L17 4092698 4598009 Noca_3874 Nocardioides sp. JS614 50S ribosomal protein L17 YP_925059.1 4092090 R 196162 CDS YP_925060.1 119718095 4598010 complement(4092849..4093865) 1 NC_008699.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 4093865 4598010 Noca_3875 Nocardioides sp. JS614 DNA-directed RNA polymerase subunit alpha YP_925060.1 4092849 R 196162 CDS YP_925061.1 119718096 4598011 complement(4094017..4094625) 1 NC_008699.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 4094625 rpsD 4598011 rpsD Nocardioides sp. JS614 30S ribosomal protein S4 YP_925061.1 4094017 R 196162 CDS YP_925062.1 119718097 4598012 complement(4094657..4095064) 1 NC_008699.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 4095064 4598012 Noca_3877 Nocardioides sp. JS614 30S ribosomal protein S11 YP_925062.1 4094657 R 196162 CDS YP_925063.2 161485633 4598013 complement(4095154..4095528) 1 NC_008699.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 4095528 rpsM 4598013 rpsM Nocardioides sp. JS614 30S ribosomal protein S13 YP_925063.2 4095154 R 196162 CDS YP_925064.1 119718099 4598014 complement(4095689..4095802) 1 NC_008699.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 4095802 rpmJ 4598014 rpmJ Nocardioides sp. JS614 50S ribosomal protein L36 YP_925064.1 4095689 R 196162 CDS YP_925065.1 119718100 4598015 complement(4095835..4096056) 1 NC_008699.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 4096056 infA 4598015 infA Nocardioides sp. JS614 translation initiation factor IF-1 YP_925065.1 4095835 R 196162 CDS YP_925066.1 119718101 4598016 complement(4096314..4097411) 1 NC_008699.1 PFAM: luciferase family protein; KEGG: mpa:MAP2513c hypothetical protein; luciferase family protein 4097411 4598016 Noca_3881 Nocardioides sp. JS614 luciferase family protein YP_925066.1 4096314 R 196162 CDS YP_925067.1 119718102 4598017 complement(4097415..4098473) 1 NC_008699.1 PFAM: Integral membrane protein TerC; KEGG: mmc:Mmcs_4785 integral membrane protein TerC; integral membrane protein TerC 4098473 4598017 Noca_3882 Nocardioides sp. JS614 integral membrane protein TerC YP_925067.1 4097415 R 196162 CDS YP_925068.1 119718103 4598018 complement(4098702..4099520) 1 NC_008699.1 KEGG: fal:FRAAL1104 methionine aminopeptidase C (MAP) (peptidase M); TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; methionine aminopeptidase 4099520 4598018 Noca_3883 Nocardioides sp. JS614 methionine aminopeptidase YP_925068.1 4098702 R 196162 CDS YP_925069.1 119718104 4598019 complement(4099531..4100106) 1 NC_008699.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 4100106 adk 4598019 adk Nocardioides sp. JS614 adenylate kinase YP_925069.1 4099531 R 196162 CDS YP_925070.1 119718105 4598020 complement(4100167..4101480) 1 NC_008699.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 4101480 secY 4598020 secY Nocardioides sp. JS614 preprotein translocase subunit SecY YP_925070.1 4100167 R 196162 CDS YP_925071.1 119718106 4598021 complement(4101646..4102086) 1 NC_008699.1 late assembly protein; 50S ribosomal protein L15 4102086 rplO 4598021 rplO Nocardioides sp. JS614 50S ribosomal protein L15 YP_925071.1 4101646 R 196162 CDS YP_925072.1 119718107 4598022 complement(4102088..4102270) 1 NC_008699.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 4102270 rpmD 4598022 rpmD Nocardioides sp. JS614 50S ribosomal protein L30 YP_925072.1 4102088 R 196162 CDS YP_925073.1 119718108 4598023 complement(4102270..4102887) 1 NC_008699.1 TIGRFAM: ribosomal protein S5; PFAM: ribosomal protein S5 domain protein; Ribosomal protein S5-like; KEGG: sco:SCO4719 30S ribosomal protein S5; 30S ribosomal protein S5 4102887 4598023 Noca_3888 Nocardioides sp. JS614 30S ribosomal protein S5 YP_925073.1 4102270 R 196162 CDS YP_925074.1 119718109 4598024 complement(4102960..4103343) 1 NC_008699.1 TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: pac:PPA1845 50S ribosomal protein L18; 50S ribosomal protein L18 4103343 4598024 Noca_3889 Nocardioides sp. JS614 50S ribosomal protein L18 YP_925074.1 4102960 R 196162 CDS YP_925075.1 119718110 4598025 complement(4103346..4103885) 1 NC_008699.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 4103885 rplF 4598025 rplF Nocardioides sp. JS614 50S ribosomal protein L6 YP_925075.1 4103346 R 196162 CDS YP_925076.1 119718111 4598026 complement(4103917..4104324) 1 NC_008699.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 4104324 rpsH 4598026 rpsH Nocardioides sp. JS614 30S ribosomal protein S8 YP_925076.1 4103917 R 196162 CDS YP_925077.1 119718112 4598027 complement(4104474..4104659) 1 NC_008699.1 PFAM: ribosomal protein S14; KEGG: pac:PPA1849 30S ribosomal protein S14; 30S ribosomal protein S14 4104659 4598027 Noca_3892 Nocardioides sp. JS614 30S ribosomal protein S14 YP_925077.1 4104474 R 196162 CDS YP_925078.1 119718113 4598028 complement(4104661..4105257) 1 NC_008699.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 4105257 rplE 4598028 rplE Nocardioides sp. JS614 50S ribosomal protein L5 YP_925078.1 4104661 R 196162 CDS YP_925079.1 119718114 4598029 complement(4105257..4105628) 1 NC_008699.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 4105628 rplX 4598029 rplX Nocardioides sp. JS614 50S ribosomal protein L24 YP_925079.1 4105257 R 196162 CDS YP_925080.1 119718115 4598030 complement(4105632..4106000) 1 NC_008699.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 4106000 rplN 4598030 rplN Nocardioides sp. JS614 50S ribosomal protein L14 YP_925080.1 4105632 R 196162 CDS YP_925081.1 119718116 4598031 complement(4106131..4106412) 1 NC_008699.1 PFAM: ribosomal protein S17; KEGG: sma:SAV4935 putative ribosomal protein S17; 30S ribosomal protein S17 4106412 4598031 Noca_3896 Nocardioides sp. JS614 30S ribosomal protein S17 YP_925081.1 4106131 R 196162 CDS YP_925082.1 119718117 4598032 complement(4106409..4106651) 1 NC_008699.1 PFAM: ribosomal protein L29; KEGG: cdi:DIP0481 50S ribosomal protein L29; 50S ribosomal protein L29 4106651 4598032 Noca_3897 Nocardioides sp. JS614 50S ribosomal protein L29 YP_925082.1 4106409 R 196162 CDS YP_925083.1 119718118 4598033 complement(4106651..4107070) 1 NC_008699.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 4107070 rplP 4598033 rplP Nocardioides sp. JS614 50S ribosomal protein L16 YP_925083.1 4106651 R 196162 CDS YP_925084.1 119718119 4598034 complement(4107075..4107911) 1 NC_008699.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 4107911 rpsC 4598034 rpsC Nocardioides sp. JS614 30S ribosomal protein S3 YP_925084.1 4107075 R 196162 CDS YP_925085.1 119718120 4598035 complement(4107911..4108351) 1 NC_008699.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 4108351 rplV 4598035 rplV Nocardioides sp. JS614 50S ribosomal protein L22 YP_925085.1 4107911 R 196162 CDS YP_925086.1 119718121 4598036 complement(4108348..4108629) 1 NC_008699.1 TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; KEGG: pac:PPA1859 30S ribosomal protein S19; 30S ribosomal protein S19 4108629 4598036 Noca_3901 Nocardioides sp. JS614 30S ribosomal protein S19 YP_925086.1 4108348 R 196162 CDS YP_925087.1 119718122 4598037 complement(4108645..4109481) 1 NC_008699.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 4109481 rplB 4598037 rplB Nocardioides sp. JS614 50S ribosomal protein L2 YP_925087.1 4108645 R 196162 CDS YP_925088.1 119718123 4598038 complement(4109513..4109818) 1 NC_008699.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 4109818 rplW 4598038 rplW Nocardioides sp. JS614 50S ribosomal protein L23 YP_925088.1 4109513 R 196162 CDS YP_925089.1 119718124 4598039 complement(4109815..4110594) 1 NC_008699.1 PFAM: ribosomal protein L4/L1e; KEGG: fal:FRAAL1082 50S ribosomal protein L4; 50S ribosomal protein L4P 4110594 4598039 Noca_3904 Nocardioides sp. JS614 50S ribosomal protein L4P YP_925089.1 4109815 R 196162 CDS YP_925090.1 119718125 4598040 complement(4110597..4111268) 1 NC_008699.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 4111268 rplC 4598040 rplC Nocardioides sp. JS614 50S ribosomal protein L3 YP_925090.1 4110597 R 196162 CDS YP_925091.1 119718126 4598041 complement(4111279..4111587) 1 NC_008699.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 4111587 rpsJ 4598041 rpsJ Nocardioides sp. JS614 30S ribosomal protein S10 YP_925091.1 4111279 R 196162 CDS YP_925092.1 119718127 4598042 4112019..4113107 1 NC_008699.1 KEGG: mtc:MT3791 hypothetical protein; hypothetical protein 4113107 4598042 Noca_3907 Nocardioides sp. JS614 hypothetical protein YP_925092.1 4112019 D 196162 CDS YP_925093.1 119718128 4598043 4113104..4113727 1 NC_008699.1 KEGG: sco:SCO3016 integral membrane protein; integral membrane protein 4113727 4598043 Noca_3908 Nocardioides sp. JS614 integral membrane protein YP_925093.1 4113104 D 196162 CDS YP_925094.1 119718129 4598044 4113724..4114839 1 NC_008699.1 KEGG: sco:SCO3017 secreted protein; secreted protein 4114839 4598044 Noca_3909 Nocardioides sp. JS614 secreted protein YP_925094.1 4113724 D 196162 CDS YP_925095.1 119718130 4598045 4114836..4115834 1 NC_008699.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: sco:SCO3018 putative regulatory protein; ATPase 4115834 4598045 Noca_3910 Nocardioides sp. JS614 ATPase YP_925095.1 4114836 D 196162 CDS YP_925096.1 119718131 4598046 4115845..4117137 1 NC_008699.1 PFAM: protein of unknown function DUF58; KEGG: sma:SAV5057 hypothetical protein; hypothetical protein 4117137 4598046 Noca_3911 Nocardioides sp. JS614 hypothetical protein YP_925096.1 4115845 D 196162 CDS YP_925097.1 119718132 4598047 complement(4117257..4118252) 1 NC_008699.1 KEGG: sco:SCO3020 integral membrane protein; integral membrane protein 4118252 4598047 Noca_3912 Nocardioides sp. JS614 integral membrane protein YP_925097.1 4117257 R 196162 CDS YP_925098.1 119718133 4598048 4118309..4119118 1 NC_008699.1 PFAM: RDD domain containing protein; KEGG: mpa:MAP0356c hypothetical protein; RDD domain-containing protein 4119118 4598048 Noca_3913 Nocardioides sp. JS614 RDD domain-containing protein YP_925098.1 4118309 D 196162 CDS YP_925099.1 119718134 4598049 4119473..4120846 1 NC_008699.1 PFAM: extracellular solute-binding protein, family 1; KEGG: tfu:Tfu_2337 ABC-type glucosylglycerol transport system substrate-binding protein; extracellular solute-binding protein 4120846 4598049 Noca_3914 Nocardioides sp. JS614 extracellular solute-binding protein YP_925099.1 4119473 D 196162 CDS YP_925100.1 119718135 4598050 4121034..4121996 1 NC_008699.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tfu:Tfu_2338 ABC-type glucosylglycerol transport system permease protein; binding-protein-dependent transport systems inner membrane component 4121996 4598050 Noca_3915 Nocardioides sp. JS614 binding-protein-dependent transport systems inner membrane component YP_925100.1 4121034 D 196162 CDS YP_925101.1 119718136 4598051 4122046..4122975 1 NC_008699.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tfu:Tfu_2339 ABC-type glucosylglycerol transport system permease protein; binding-protein-dependent transport system inner membrane protein 4122975 4598051 Noca_3916 Nocardioides sp. JS614 binding-protein-dependent transport system inner membrane protein YP_925101.1 4122046 D 196162 CDS YP_925102.1 119718137 4598052 complement(4123014..4124381) 1 NC_008699.1 PFAM: glycoside hydrolase, family 1; KEGG: tth:TT_P0042 beta-glycosidase; beta-glucosidase 4124381 4598052 Noca_3917 Nocardioides sp. JS614 beta-glucosidase YP_925102.1 4123014 R 196162 CDS YP_925103.1 119718138 4598053 4124429..4125484 1 NC_008699.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: fra:Francci3_2164 transcriptional regulator, LacI family; LacI family transcriptional regulator 4125484 4598053 Noca_3918 Nocardioides sp. JS614 LacI family transcriptional regulator YP_925103.1 4124429 D 196162 CDS YP_925104.1 119718139 4598054 complement(4125444..4126190) 1 NC_008699.1 KEGG: pac:PPA1808 conserved methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: putative methyltransferase; tRNA (guanine-N(7)-)-methyltransferase 4126190 4598054 Noca_3919 Nocardioides sp. JS614 tRNA (guanine-N(7)-)-methyltransferase YP_925104.1 4125444 R 196162 CDS YP_925105.1 119718140 4598055 4126353..4126838 1 NC_008699.1 PFAM: transcription activator, effector binding; KEGG: cte:CT0179 hypothetical protein; transcription activator, effector binding 4126838 4598055 Noca_3920 Nocardioides sp. JS614 transcription activator, effector binding YP_925105.1 4126353 D 196162 CDS YP_925106.1 119718141 4598056 4126835..4128187 1 NC_008699.1 PFAM: aminotransferase class-III; KEGG: pae:PA5523 glutamate-1-semialdehyde 2,1-aminomutase, putative; aminotransferase 4128187 4598056 Noca_3921 Nocardioides sp. JS614 aminotransferase YP_925106.1 4126835 D 196162 CDS YP_925107.1 119718142 4598057 complement(4128474..4129667) 1 NC_008699.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 4129667 4598057 Noca_3922 Nocardioides sp. JS614 elongation factor Tu YP_925107.1 4128474 R 196162 CDS YP_925108.1 119718143 4598058 complement(4129750..4131861) 1 NC_008699.1 TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; elongation factor G, domain IV; KEGG: fal:FRAAL1078 protein chain elongation factor EF-G, GTP-binding; translation elongation factor 2 (EF-2/EF-G) 4131861 4598058 Noca_3923 Nocardioides sp. JS614 translation elongation factor 2 (EF-2/EF-G) YP_925108.1 4129750 R 196162 CDS YP_925109.1 119718144 4598059 complement(4131947..4132417) 1 NC_008699.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 4132417 4598059 Noca_3924 Nocardioides sp. JS614 30S ribosomal protein S7 YP_925109.1 4131947 R 196162 CDS YP_925110.1 119718145 4598060 complement(4132419..4132793) 1 NC_008699.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 4132793 rpsL 4598060 rpsL Nocardioides sp. JS614 30S ribosomal protein S12 YP_925110.1 4132419 R 196162 CDS YP_925111.1 119718146 4598061 complement(4132924..4134297) 1 NC_008699.1 PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1; KEGG: bxe:Bxe_B2022 major facilitator superfamily (MFS) multidrug efflux pump; major facilitator transporter 4134297 4598061 Noca_3926 Nocardioides sp. JS614 major facilitator transporter YP_925111.1 4132924 R 196162 CDS YP_925112.1 119718147 4598062 complement(4134321..4134791) 1 NC_008699.1 PFAM: regulatory protein, MarR; KEGG: fra:Francci3_0086 transcriptional regulator, MarR family; regulatory protein MarR 4134791 4598062 Noca_3927 Nocardioides sp. JS614 regulatory protein MarR YP_925112.1 4134321 R 196162 CDS YP_925113.1 119718148 4598063 complement(4134883..4136358) 1 NC_008699.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: sma:SAV6386 putative hypoxanthine/guanine permease; xanthine/uracil/vitamin C permease 4136358 4598063 Noca_3928 Nocardioides sp. JS614 xanthine/uracil/vitamin C permease YP_925113.1 4134883 R 196162 CDS YP_925114.1 119718149 4598064 4136461..4136697 1 NC_008699.1 KEGG: sma:SAV3898 integral membrane protein; integral membrane protein 4136697 4598064 Noca_3929 Nocardioides sp. JS614 integral membrane protein YP_925114.1 4136461 D 196162 CDS YP_925115.1 119718150 4598065 complement(4136827..4137621) 1 NC_008699.1 KEGG: fal:FRAAL6731 hypothetical protein; hypothetical protein 4137621 4598065 Noca_3930 Nocardioides sp. JS614 hypothetical protein YP_925115.1 4136827 R 196162 CDS YP_925116.1 119718151 4598066 4137663..4139012 1 NC_008699.1 PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO4329 integral membrane protein; major facilitator transporter 4139012 4598066 Noca_3931 Nocardioides sp. JS614 major facilitator transporter YP_925116.1 4137663 D 196162 CDS YP_925117.1 119718152 4598067 complement(4139022..4139417) 1 NC_008699.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: pac:PPA0477 cold shock protein; cold-shock DNA-binding protein family protein 4139417 4598067 Noca_3932 Nocardioides sp. JS614 cold-shock DNA-binding protein family protein YP_925117.1 4139022 R 196162 CDS YP_925118.1 119718153 4598068 complement(4139472..4140890) 1 NC_008699.1 PFAM: ExsB family protein; Haloacid dehalogenase domain protein hydrolase; PP-loop domain protein; KEGG: ade:Adeh_1542 hypothetical protein; hydrolase 4140890 4598068 Noca_3933 Nocardioides sp. JS614 hydrolase YP_925118.1 4139472 R 196162 CDS YP_925119.1 119718154 4598070 complement(4143086..4143307) 1 NC_008699.1 KEGG: mes:Meso_0710 hypothetical protein; hypothetical protein 4143307 4598070 Noca_3935 Nocardioides sp. JS614 hypothetical protein YP_925119.1 4143086 R 196162 CDS YP_925120.1 119718155 4598071 complement(4143392..4144606) 1 NC_008699.1 KEGG: sma:SAV5466 hypothetical protein; hypothetical protein 4144606 4598071 Noca_3936 Nocardioides sp. JS614 hypothetical protein YP_925120.1 4143392 R 196162 CDS YP_925121.1 119718156 4598072 complement(4144769..4146388) 1 NC_008699.1 activates fatty acids by binding to coenzyme A; AMP-binding domain-containing protein 4146388 4598072 Noca_3937 Nocardioides sp. JS614 AMP-binding domain-containing protein YP_925121.1 4144769 R 196162 CDS YP_925122.1 119718157 4598073 complement(4146439..4146849) 1 NC_008699.1 KEGG: bja:blr0750 hypothetical protein; hypothetical protein 4146849 4598073 Noca_3938 Nocardioides sp. JS614 hypothetical protein YP_925122.1 4146439 R 196162 CDS YP_925123.1 119718158 4598074 complement(4147148..4149625) 1 NC_008699.1 PFAM: peptidase M6, immune inhibitor A; KEGG: ade:Adeh_0322 peptidase M6, immune inhibitor A; peptidase M6, immune inhibitor A 4149625 4598074 Noca_3939 Nocardioides sp. JS614 peptidase M6, immune inhibitor A YP_925123.1 4147148 R 196162 CDS YP_925124.1 119718159 4598075 complement(4149699..4150748) 1 NC_008699.1 PFAM: RDD domain containing protein; KEGG: lxx:Lxx12090 hypothetical protein; RDD domain-containing protein 4150748 4598075 Noca_3940 Nocardioides sp. JS614 RDD domain-containing protein YP_925124.1 4149699 R 196162 CDS YP_925125.1 119718160 4598076 complement(4150745..4151794) 1 NC_008699.1 PFAM: Forkhead-associated protein; KEGG: lxx:Lxx04220 hypothetical protein; forkhead-associated protein 4151794 4598076 Noca_3941 Nocardioides sp. JS614 forkhead-associated protein YP_925125.1 4150745 R 196162 CDS YP_925126.1 119718161 4598077 complement(4151791..4152633) 1 NC_008699.1 PFAM: protein phosphatase 2C domain protein; KEGG: lxx:Lxx12030 protein phosphatase; protein phosphatase 2C domain-containing protein 4152633 4598077 Noca_3942 Nocardioides sp. JS614 protein phosphatase 2C domain-containing protein YP_925126.1 4151791 R 196162 CDS YP_925127.1 119718162 4598078 complement(4152736..4153884) 1 NC_008699.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: sco:SCO1294 cystathionine gamma-synthase; cystathionine gamma-synthase 4153884 4598078 Noca_3943 Nocardioides sp. JS614 cystathionine gamma-synthase YP_925127.1 4152736 R 196162 CDS YP_925128.1 119718163 4598079 4154003..4154509 1 NC_008699.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: rha:RHA1_ro07274 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 4154509 4598079 Noca_3944 Nocardioides sp. JS614 AsnC family transcriptional regulator YP_925128.1 4154003 D 196162 CDS YP_925129.1 119718164 4598080 4154606..4156882 1 NC_008699.1 KEGG: sma:SAV3911 hypothetical protein; hypothetical protein 4156882 4598080 Noca_3945 Nocardioides sp. JS614 hypothetical protein YP_925129.1 4154606 D 196162 CDS YP_925130.1 119718165 4598081 4156892..4157419 1 NC_008699.1 PFAM: protein of unknown function DUF1470; KEGG: sma:SAV2986 hypothetical protein; hypothetical protein 4157419 4598081 Noca_3946 Nocardioides sp. JS614 hypothetical protein YP_925130.1 4156892 D 196162 CDS YP_925131.1 119718166 4598082 4157563..4159203 1 NC_008699.1 PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sma:SAV3912 ATP-dependent DNA helicase; helicase domain-containing protein 4159203 4598082 Noca_3947 Nocardioides sp. JS614 helicase domain-containing protein YP_925131.1 4157563 D 196162 CDS YP_925132.1 119718167 4598083 4159443..4160378 1 NC_008699.1 PFAM: peptidase M23B; KEGG: sco:SCO4108 probable peptidase; peptidase M23B 4160378 4598083 Noca_3948 Nocardioides sp. JS614 peptidase M23B YP_925132.1 4159443 D 196162 CDS YP_925133.1 119718168 4598084 4161334..4162689 1 NC_008699.1 catalyzes the formation of L-tryptophan from indole and L-serine; tryptophan synthase subunit beta 4162689 4598084 Noca_3949 Nocardioides sp. JS614 tryptophan synthase subunit beta YP_925133.1 4161334 D 196162 CDS YP_925134.1 119718169 4598085 complement(4162805..4165528) 1 NC_008699.1 KEGG: sma:SAV2604 secreted protein; secreted protein 4165528 4598085 Noca_3950 Nocardioides sp. JS614 secreted protein YP_925134.1 4162805 R 196162 CDS YP_925135.1 119718170 4598086 4165693..4166886 1 NC_008699.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 4166886 4598086 Noca_3951 Nocardioides sp. JS614 D-3-phosphoglycerate dehydrogenase YP_925135.1 4165693 D 196162 CDS YP_925136.1 119718171 4598087 4167070..4167939 1 NC_008699.1 KEGG: mmc:Mmcs_4212 hypothetical protein; hypothetical protein 4167939 4598087 Noca_3952 Nocardioides sp. JS614 hypothetical protein YP_925136.1 4167070 D 196162 CDS YP_925137.1 119718172 4598088 4167996..4169258 1 NC_008699.1 hypothetical protein 4169258 4598088 Noca_3953 Nocardioides sp. JS614 hypothetical protein YP_925137.1 4167996 D 196162 CDS YP_925138.1 119718173 4598089 complement(4169255..4169629) 1 NC_008699.1 PFAM: nuclear transport factor 2; KEGG: rha:RHA1_ro03609 steroid delta-isomerase; nuclear transport factor 2 4169629 4598089 Noca_3954 Nocardioides sp. JS614 nuclear transport factor 2 YP_925138.1 4169255 R 196162 CDS YP_925139.1 119718174 4598090 4169709..4170314 1 NC_008699.1 KEGG: sma:SAV3919 hypothetical protein; hypothetical protein 4170314 4598090 Noca_3955 Nocardioides sp. JS614 hypothetical protein YP_925139.1 4169709 D 196162 CDS YP_925140.1 119718175 4598091 complement(4170355..4170615) 1 NC_008699.1 KEGG: sco:SCO4310 hypothetical protein; hypothetical protein 4170615 4598091 Noca_3956 Nocardioides sp. JS614 hypothetical protein YP_925140.1 4170355 R 196162 CDS YP_925141.1 119718176 4598092 complement(4170612..4171355) 1 NC_008699.1 PFAM: CutC family protein; KEGG: pac:PPA0471 putative copper homeostasis protein CutC; CutC family protein 4171355 4598092 Noca_3957 Nocardioides sp. JS614 CutC family protein YP_925141.1 4170612 R 196162 CDS YP_925142.1 119718177 4598093 4171418..4171774 1 NC_008699.1 KEGG: sma:SAV3922 hypothetical protein; hypothetical protein 4171774 4598093 Noca_3958 Nocardioides sp. JS614 hypothetical protein YP_925142.1 4171418 D 196162 CDS YP_925143.1 119718178 4598094 complement(4171956..4172615) 1 NC_008699.1 PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: pac:PPA0676 transcriptional regulator, GntR family; GntR family transcriptional regulator 4172615 4598094 Noca_3959 Nocardioides sp. JS614 GntR family transcriptional regulator YP_925143.1 4171956 R 196162 CDS YP_925144.1 119718179 4598095 complement(4172778..4175315) 1 NC_008699.1 PFAM: protein of unknown function DUF214; KEGG: fal:FRAAL2863 putative ABC transport system integral membrane protein; hypothetical protein 4175315 4598095 Noca_3960 Nocardioides sp. JS614 hypothetical protein YP_925144.1 4172778 R 196162 CDS YP_925145.1 119718180 4598096 complement(4175496..4176263) 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO3089 putative ABC transporter ATP-binding protein; ABC transporter-like protein 4176263 4598096 Noca_3961 Nocardioides sp. JS614 ABC transporter-like protein YP_925145.1 4175496 R 196162 CDS YP_925146.1 119718181 4598097 4176400..4177014 1 NC_008699.1 KEGG: sma:SAV1131 alkylated DNA repair protein; DNA-N1-methyladenine dioxygenase 4177014 4598097 Noca_3962 Nocardioides sp. JS614 DNA-N1-methyladenine dioxygenase YP_925146.1 4176400 D 196162 CDS YP_925147.1 119718182 4598098 4177092..4177760 1 NC_008699.1 PFAM: methyltransferase small; KEGG: mxa:MXAN_4908 putative protein methyltransferase HemK; methyltransferase small 4177760 4598098 Noca_3963 Nocardioides sp. JS614 methyltransferase small YP_925147.1 4177092 D 196162 CDS YP_925148.1 119718183 4598099 complement(4178023..4178991) 1 NC_008699.1 KEGG: sma:SAV7196 hypothetical protein; hypothetical protein 4178991 4598099 Noca_3964 Nocardioides sp. JS614 hypothetical protein YP_925148.1 4178023 R 196162 CDS YP_925149.1 119718184 4598100 complement(4179205..4179768) 1 NC_008699.1 PFAM: LemA family protein; KEGG: mmc:Mmcs_2382 LemA; LemA family protein 4179768 4598100 Noca_3965 Nocardioides sp. JS614 LemA family protein YP_925149.1 4179205 R 196162 CDS YP_925150.1 119718185 4598101 4179789..4183016 1 NC_008699.1 PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV4106 hypothetical protein; major facilitator transporter 4183016 4598101 Noca_3966 Nocardioides sp. JS614 major facilitator transporter YP_925150.1 4179789 D 196162 CDS YP_925151.1 119718186 4598102 complement(4183079..4183819) 1 NC_008699.1 PFAM: carbon monoxide dehydrogenase subunit G; KEGG: rxy:Rxyl_0120 carbon monoxide dehydrogenase subunit G; carbon monoxide dehydrogenase subunit G 4183819 4598102 Noca_3967 Nocardioides sp. JS614 carbon monoxide dehydrogenase subunit G YP_925151.1 4183079 R 196162 CDS YP_925152.1 119718187 4598103 complement(4183826..4184680) 1 NC_008699.1 PFAM: molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: rha:RHA1_ro04975 carbon monoxide dehydrogenase medium subunit; carbon monoxide dehydrogenase, medium subunit 4184680 4598103 Noca_3968 Nocardioides sp. JS614 carbon monoxide dehydrogenase, medium subunit YP_925152.1 4183826 R 196162 CDS YP_925153.1 119718188 4598104 complement(4184733..4187240) 1 NC_008699.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: rha:RHA1_ro04976 carbon monoxide dehydrogenase large subunit; xanthine dehydrogenase, molybdenum binding subunit apoprotein 4187240 4598104 Noca_3969 Nocardioides sp. JS614 xanthine dehydrogenase, molybdenum binding subunit apoprotein YP_925153.1 4184733 R 196162 CDS YP_925154.1 119718189 4598105 complement(4187237..4187707) 1 NC_008699.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rha:RHA1_ro04977 carbon monoxide dehydrogenase small subunit (ferredoxin); 2Fe-2S iron-sulfur cluster binding domain-containing protein 4187707 4598105 Noca_3970 Nocardioides sp. JS614 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_925154.1 4187237 R 196162 CDS YP_925155.1 119718190 4598106 complement(4187894..4189129) 1 NC_008699.1 PFAM: transcriptional regulator domain protein; KEGG: nfa:nfa41070 hypothetical protein; transcriptional regulator domain-containing protein 4189129 4598106 Noca_3971 Nocardioides sp. JS614 transcriptional regulator domain-containing protein YP_925155.1 4187894 R 196162 CDS YP_925156.1 119718191 4598107 4189469..4192450 1 NC_008699.1 PFAM: PKD domain containing protein; KEGG: sde:Sde_3982 protein of unknown function DUF37; PKD domain-containing protein 4192450 4598107 Noca_3972 Nocardioides sp. JS614 PKD domain-containing protein YP_925156.1 4189469 D 196162 CDS YP_925157.1 119718192 4598108 complement(4192436..4193632) 1 NC_008699.1 PFAM: protein of unknown function DUF182; KEGG: mmc:Mmcs_0488 protein of unknown function DUF182; hypothetical protein 4193632 4598108 Noca_3973 Nocardioides sp. JS614 hypothetical protein YP_925157.1 4192436 R 196162 CDS YP_925158.1 119718193 4598109 complement(4193625..4194737) 1 NC_008699.1 PFAM: VWA containing CoxE family protein; SMART: von Willebrand factor, type A; KEGG: rha:RHA1_ro04978 hypothetical protein; VWA containing CoxE family protein 4194737 4598109 Noca_3974 Nocardioides sp. JS614 VWA containing CoxE family protein YP_925158.1 4193625 R 196162 CDS YP_925159.1 119718194 4598110 complement(4194937..4195821) 1 NC_008699.1 PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rha:RHA1_ro04979 probable ATPase, MoxR family; ATPase 4195821 4598110 Noca_3975 Nocardioides sp. JS614 ATPase YP_925159.1 4194937 R 196162 CDS YP_925160.1 119718195 4598111 complement(4195870..4196427) 1 NC_008699.1 KEGG: rha:RHA1_ro04499 hypothetical protein; hypothetical protein 4196427 4598111 Noca_3976 Nocardioides sp. JS614 hypothetical protein YP_925160.1 4195870 R 196162 CDS YP_925161.1 119718196 4598112 complement(4196471..4197091) 1 NC_008699.1 hypothetical protein 4197091 4598112 Noca_3977 Nocardioides sp. JS614 hypothetical protein YP_925161.1 4196471 R 196162 CDS YP_925162.1 119718197 4598113 complement(4197088..4197612) 1 NC_008699.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: cdi:DIP0880 putative RNA polymerase sigma factor; sigma-70 factor 4197612 4598113 Noca_3978 Nocardioides sp. JS614 sigma-70 factor YP_925162.1 4197088 R 196162 CDS YP_925163.1 119718198 4598114 4197736..4198794 1 NC_008699.1 PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: rfr:Rfer_4140 C4-dicarboxylate transporter/malic acid transport protein; C4-dicarboxylate transporter/malic acid transport protein 4198794 4598114 Noca_3979 Nocardioides sp. JS614 C4-dicarboxylate transporter/malic acid transport protein YP_925163.1 4197736 D 196162 CDS YP_925164.1 119718199 4598115 complement(4198861..4199700) 1 NC_008699.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: pac:PPA0240 hypothetical protein; hemerythrin HHE cation binding domain-containing protein 4199700 4598115 Noca_3980 Nocardioides sp. JS614 hemerythrin HHE cation binding domain-containing protein YP_925164.1 4198861 R 196162 CDS YP_925165.1 119718200 4598116 4199794..4200489 1 NC_008699.1 PFAM: LexA DNA-binding domain protein; KEGG: mpa:MAP2725c hypothetical protein; transcriptional regulator 4200489 4598116 Noca_3981 Nocardioides sp. JS614 transcriptional regulator YP_925165.1 4199794 D 196162 CDS YP_925166.1 119718201 4598117 complement(4200741..4202366) 1 NC_008699.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 4202366 groEL 4598117 groEL Nocardioides sp. JS614 chaperonin GroEL YP_925166.1 4200741 R 196162 CDS YP_925167.1 119718202 4598118 complement(4202745..4203617) 1 NC_008699.1 PFAM: protein of unknown function DUF201; KEGG: pat:Patl_0408 hypothetical protein; hypothetical protein 4203617 4598118 Noca_3983 Nocardioides sp. JS614 hypothetical protein YP_925167.1 4202745 R 196162 CDS YP_925168.1 119718203 4598119 complement(4203696..4204715) 1 NC_008699.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: tfu:Tfu_0938 regulatory protein, LacI; LacI family transcriptional regulator 4204715 4598119 Noca_3984 Nocardioides sp. JS614 LacI family transcriptional regulator YP_925168.1 4203696 R 196162 CDS YP_925169.1 119718204 4598120 complement(4204968..4205864) 1 NC_008699.1 PFAM: lipolytic enzyme, G-D-S-L family; KEGG: sco:SCO3078 secreted protein; GDSL family lipase 4205864 4598120 Noca_3985 Nocardioides sp. JS614 GDSL family lipase YP_925169.1 4204968 R 196162 CDS YP_925170.1 119718205 4598121 complement(4205937..4206218) 1 NC_008699.1 PFAM: thiamineS protein; KEGG: tfu:Tfu_0227 hypothetical protein; sulfur transfer protein ThiS 4206218 4598121 Noca_3986 Nocardioides sp. JS614 sulfur transfer protein ThiS YP_925170.1 4205937 R 196162 CDS YP_925171.1 119718206 4598122 complement(4206245..4207519) 1 NC_008699.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 4207519 4598122 Noca_3987 Nocardioides sp. JS614 threonine synthase YP_925171.1 4206245 R 196162 CDS YP_925172.1 119718207 4598123 complement(4207766..4210075) 1 NC_008699.1 KEGG: nfa:nfa56180 putative ATP-dependent protease; TIGRFAM: ATP-dependent protease La; PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: peptidase S16, lon domain protein; AAA ATPase; ATP-dependent protease La 4210075 4598123 Noca_3988 Nocardioides sp. JS614 ATP-dependent protease La YP_925172.1 4207766 R 196162 CDS YP_925173.1 119718208 4598124 complement(4210257..4211102) 1 NC_008699.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase; KEGG: sma:SAV3937 trehalose-6-phosphatase; HAD family hydrolase 4211102 4598124 Noca_3989 Nocardioides sp. JS614 HAD family hydrolase YP_925173.1 4210257 R 196162 CDS YP_925174.1 119718209 4598125 complement(4211154..4211645) 1 NC_008699.1 KEGG: rha:RHA1_ro02174 possible glycoprotein; hypothetical protein 4211645 4598125 Noca_3990 Nocardioides sp. JS614 hypothetical protein YP_925174.1 4211154 R 196162 CDS YP_925175.1 119718210 4598126 complement(4211649..4211942) 1 NC_008699.1 KEGG: mpa:MAP3919 hypothetical protein; hypothetical protein 4211942 4598126 Noca_3991 Nocardioides sp. JS614 hypothetical protein YP_925175.1 4211649 R 196162 CDS YP_925176.1 119718211 4598127 4212060..4213070 1 NC_008699.1 PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: sru:SRU_0347 oxidoreductase family, NAD-binding Rossmann fold domain protein; oxidoreductase domain-containing protein 4213070 4598127 Noca_3992 Nocardioides sp. JS614 oxidoreductase domain-containing protein YP_925176.1 4212060 D 196162 CDS YP_925177.1 119718212 4598128 complement(4213095..4213616) 1 NC_008699.1 KEGG: sco:SCO4598 two-component system sensor kinase; hypothetical protein 4213616 4598128 Noca_3993 Nocardioides sp. JS614 hypothetical protein YP_925177.1 4213095 R 196162 CDS YP_925178.1 119718213 4598129 4213722..4215170 1 NC_008699.1 PFAM: glycosyl transferase, family 20; KEGG: pac:PPA0961 alpha,alpha-trehalose-phosphate synthase; alpha,alpha-trehalose-phosphate synthase 4215170 4598129 Noca_3994 Nocardioides sp. JS614 alpha,alpha-trehalose-phosphate synthase YP_925178.1 4213722 D 196162 CDS YP_925179.1 119718214 4598130 4215244..4216641 1 NC_008699.1 PFAM: alpha/beta hydrolase fold; KEGG: rha:RHA1_ro04396 probable poly-beta-hydroxybutyrate polymerase; alpha/beta hydrolase fold protein 4216641 4598130 Noca_3995 Nocardioides sp. JS614 alpha/beta hydrolase fold protein YP_925179.1 4215244 D 196162 CDS YP_925180.1 119718215 4598131 4216738..4218069 1 NC_008699.1 PFAM: major facilitator superfamily MFS_1; KEGG: syg:sync_2195 putative GPH family sugar transporter; major facilitator transporter 4218069 4598131 Noca_3996 Nocardioides sp. JS614 major facilitator transporter YP_925180.1 4216738 D 196162 CDS YP_925181.1 119718216 4598132 4218066..4219616 1 NC_008699.1 PFAM: aminotransferase, class V; Pyridoxal-dependent decarboxylase; KEGG: sth:STH1274 putative sphingosine-1-phosphate lyase; pyridoxal-dependent decarboxylase 4219616 4598132 Noca_3997 Nocardioides sp. JS614 pyridoxal-dependent decarboxylase YP_925181.1 4218066 D 196162 CDS YP_925182.1 119718217 4598133 complement(4219565..4220491) 1 NC_008699.1 PFAM: PfkB domain protein; KEGG: rde:RD1_3878 sugar kinase, putative; ribokinase-like domain-containing protein 4220491 4598133 Noca_3998 Nocardioides sp. JS614 ribokinase-like domain-containing protein YP_925182.1 4219565 R 196162 CDS YP_925183.1 119718218 4598134 complement(4220488..4221264) 1 NC_008699.1 PFAM: regulatory protein, TetR; KEGG: tfu:Tfu_0143 similar to transcriptional regulator; regulatory protein TetR 4221264 4598134 Noca_3999 Nocardioides sp. JS614 regulatory protein TetR YP_925183.1 4220488 R 196162 CDS YP_925184.1 119718219 4598135 4221278..4222777 1 NC_008699.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: nfa:nfa30780 putative oxidoreductase; amine oxidase 4222777 4598135 Noca_4000 Nocardioides sp. JS614 amine oxidase YP_925184.1 4221278 D 196162 CDS YP_925185.1 119718220 4598136 complement(4222714..4223904) 1 NC_008699.1 KEGG: ade:Adeh_1681 PE-PGRS family protein; PE-PGRS family protein 4223904 4598136 Noca_4001 Nocardioides sp. JS614 PE-PGRS family protein YP_925185.1 4222714 R 196162 CDS YP_925186.1 119718221 4598137 4223973..4224665 1 NC_008699.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 4224665 4598137 Noca_4002 Nocardioides sp. JS614 uracil-DNA glycosylase YP_925186.1 4223973 D 196162 CDS YP_925187.1 119718222 4598138 4224694..4225470 1 NC_008699.1 PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: rha:RHA1_ro01018 hypothetical protein; extradiol ring-cleavage dioxygenase III subunit B 4225470 4598138 Noca_4003 Nocardioides sp. JS614 extradiol ring-cleavage dioxygenase III subunit B YP_925187.1 4224694 D 196162 CDS YP_925188.1 119718223 4598139 complement(4225593..4227152) 1 NC_008699.1 NADP-dependent semialdehyde dehydrogenase; part of alternative pathway from alpha-ketoglutarate to succinate; succinate-semialdehyde dehydrogenase 4227152 gabD2 4598139 gabD2 Nocardioides sp. JS614 succinate-semialdehyde dehydrogenase YP_925188.1 4225593 R 196162 CDS YP_925189.1 119718224 4598140 complement(4227158..4228795) 1 NC_008699.1 PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: dra:DR0965 GMC oxidoreductase; glucose-methanol-choline oxidoreductase 4228795 4598140 Noca_4005 Nocardioides sp. JS614 glucose-methanol-choline oxidoreductase YP_925189.1 4227158 R 196162 CDS YP_925190.1 119718225 4598141 4228910..4229791 1 NC_008699.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase 4229791 4598141 Noca_4006 Nocardioides sp. JS614 pyridoxamine kinase YP_925190.1 4228910 D 196162 CDS YP_925191.1 119718226 4598142 complement(4229849..4230598) 1 NC_008699.1 KEGG: bta:540183 similar to tyrosylprotein sulfotransferase 2 Pfam: DUF470 Sulfotransfer_1; hypothetical protein 4230598 4598142 Noca_4007 Nocardioides sp. JS614 hypothetical protein YP_925191.1 4229849 R 196162 CDS YP_925192.1 119718227 4598143 4230841..4231434 1 NC_008699.1 PFAM: protein of unknown function DUF305; KEGG: nfa:nfa38100 hypothetical protein; hypothetical protein 4231434 4598143 Noca_4008 Nocardioides sp. JS614 hypothetical protein YP_925192.1 4230841 D 196162 CDS YP_925193.1 119718228 4598145 complement(4231597..4232319) 1 NC_008699.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: mmc:Mmcs_3395 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 4232319 4598145 Noca_4009 Nocardioides sp. JS614 short-chain dehydrogenase/reductase SDR YP_925193.1 4231597 R 196162 CDS YP_925194.1 119718229 4598146 complement(4232365..4232811) 1 NC_008699.1 KEGG: mmc:Mmcs_1152 hypothetical protein; hypothetical protein 4232811 4598146 Noca_4010 Nocardioides sp. JS614 hypothetical protein YP_925194.1 4232365 R 196162 CDS YP_925195.1 119718230 4598147 4232877..4234082 1 NC_008699.1 KEGG: pac:PPA0386 hypothetical protein; hypothetical protein 4234082 4598147 Noca_4011 Nocardioides sp. JS614 hypothetical protein YP_925195.1 4232877 D 196162 CDS YP_925196.1 119718231 4598148 4234209..4235507 1 NC_008699.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: mtc:MT3905 IS1557, transposase; transposase, IS204/IS1001/IS1096/IS1165 family protein 4235507 4598148 Noca_4012 Nocardioides sp. JS614 transposase, IS204/IS1001/IS1096/IS1165 family protein YP_925196.1 4234209 D 196162 CDS YP_925197.1 119718232 4598149 complement(4235741..4236328) 1 NC_008699.1 KEGG: sma:SAV6531 hypothetical protein; hypothetical protein 4236328 4598149 Noca_4013 Nocardioides sp. JS614 hypothetical protein YP_925197.1 4235741 R 196162 CDS YP_925198.1 119718233 4598150 complement(4236331..4238016) 1 NC_008699.1 KEGG: rno:315071 procollagen, type XXII, alpha 1 (predicted); hypothetical protein 4238016 4598150 Noca_4014 Nocardioides sp. JS614 hypothetical protein YP_925198.1 4236331 R 196162 CDS YP_925199.1 119718234 4598151 complement(4238013..4238720) 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_1835 ABC transporter related; ABC transporter-like protein 4238720 4598151 Noca_4015 Nocardioides sp. JS614 ABC transporter-like protein YP_925199.1 4238013 R 196162 CDS YP_925200.1 119718235 4598152 complement(4238717..4239535) 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fal:FRAAL2623 hypothetical protein; putative membrane protein involved in branched-chain amino acid transport, ATP-binding; ABC transporter-like protein 4239535 4598152 Noca_4016 Nocardioides sp. JS614 ABC transporter-like protein YP_925200.1 4238717 R 196162 CDS YP_925201.1 119718236 4598153 complement(4239525..4241618) 1 NC_008699.1 PFAM: inner-membrane translocator; KEGG: fal:FRAAL3359 putative sulfate-transporting ATPase; inner-membrane translocator 4241618 4598153 Noca_4017 Nocardioides sp. JS614 inner-membrane translocator YP_925201.1 4239525 R 196162 CDS YP_925202.1 119718237 4598154 complement(4242081..4243526) 1 NC_008699.1 KEGG: rme:Rmet_5877 extracellular ligand-binding receptor; ABC-type branched-chain amino acid transport systems periplasmic component-like 4243526 4598154 Noca_4018 Nocardioides sp. JS614 ABC-type branched-chain amino acid transport systems periplasmic component-like YP_925202.1 4242081 R 196162 CDS YP_925203.1 119718238 4598155 complement(4243634..4245076) 1 NC_008699.1 PFAM: metallophosphoesterase; KEGG: swo:Swol_2226 hypothetical protein; metallophosphoesterase 4245076 4598155 Noca_4019 Nocardioides sp. JS614 metallophosphoesterase YP_925203.1 4243634 R 196162 CDS YP_925204.1 119718239 4598156 complement(4245178..4246122) 1 NC_008699.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; KEGG: mmc:Mmcs_4736 RNA methyltransferase TrmH, group 3; RNA methyltransferase 4246122 4598156 Noca_4020 Nocardioides sp. JS614 RNA methyltransferase YP_925204.1 4245178 R 196162 CDS YP_925205.1 119718240 4598157 complement(4246125..4247540) 1 NC_008699.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 4247540 cysS 4598157 cysS Nocardioides sp. JS614 cysteinyl-tRNA synthetase YP_925205.1 4246125 R 196162 CDS YP_925206.1 119718241 4596536 4247563..4248759 1 NC_008699.1 KEGG: sma:SAV6915 hypothetical protein; hypothetical protein 4248759 4596536 Noca_4022 Nocardioides sp. JS614 hypothetical protein YP_925206.1 4247563 D 196162 CDS YP_925207.1 119718242 4596537 complement(4248915..4250480) 1 NC_008699.1 PFAM: oxidoreductase, molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: rha:RHA1_ro01563 probable sufite oxidase; oxidoreductase 4250480 4596537 Noca_4023 Nocardioides sp. JS614 oxidoreductase YP_925207.1 4248915 R 196162 CDS YP_925208.1 119718243 4596538 4250519..4251013 1 NC_008699.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4251013 ispF 4596538 ispF Nocardioides sp. JS614 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_925208.1 4250519 D 196162 CDS YP_925209.1 119718244 4596539 complement(4250985..4251368) 1 NC_008699.1 TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: fra:Francci3_0795 nitrite reductase (NAD(P)H) large subunit, NirD; nitrite reductase (NAD(P)H) small subunit 4251368 4596539 Noca_4025 Nocardioides sp. JS614 nitrite reductase (NAD(P)H) small subunit YP_925209.1 4250985 R 196162 CDS YP_925210.1 119718245 4596540 complement(4251590..4251916) 1 NC_008699.1 hypothetical protein 4251916 4596540 Noca_4026 Nocardioides sp. JS614 hypothetical protein YP_925210.1 4251590 R 196162 CDS YP_925211.1 119718246 4596541 complement(4251903..4252526) 1 NC_008699.1 KEGG: cya:CYA_0495 hypothetical protein; hypothetical protein 4252526 4596541 Noca_4027 Nocardioides sp. JS614 hypothetical protein YP_925211.1 4251903 R 196162 CDS YP_925212.1 119718247 4596542 complement(4252608..4253459) 1 NC_008699.1 TIGRFAM: ethanolamine utilization protein EutJ family protein; PFAM: cell division protein FtsA; KEGG: dde:Dde_3275 ethanolamine utilization protein EutJ; ethanolamine utilization protein EutJ family protein 4253459 4596542 Noca_4028 Nocardioides sp. JS614 ethanolamine utilization protein EutJ family protein YP_925212.1 4252608 R 196162 CDS YP_925213.1 119718248 4596543 complement(4253459..4254022) 1 NC_008699.1 PFAM: protein of unknown function DUF861, cupin_3; Ethanolamine utilisation EutQ family protein; KEGG: ecj:JW2444 conserved hypothetical protein; ethanolamine utilisation EutQ family protein 4254022 4596543 Noca_4029 Nocardioides sp. JS614 ethanolamine utilisation EutQ family protein YP_925213.1 4253459 R 196162 CDS YP_925214.1 119718249 4596544 complement(4254057..4254371) 1 NC_008699.1 PFAM: microcompartments protein; KEGG: dsy:DSY4991 hypothetical protein; microcompartments protein 4254371 4596544 Noca_4030 Nocardioides sp. JS614 microcompartments protein YP_925214.1 4254057 R 196162 CDS YP_925215.1 119718250 4596545 complement(4254499..4256034) 1 NC_008699.1 KEGG: lin:lin1143 hypothetical protein; acetaldehyde dehydrogenase 4256034 4596545 Noca_4031 Nocardioides sp. JS614 acetaldehyde dehydrogenase YP_925215.1 4254499 R 196162 CDS YP_925216.1 119718251 4596546 complement(4256034..4256690) 1 NC_008699.1 PFAM: microcompartments protein; KEGG: dsy:DSY4965 hypothetical protein; microcompartments protein 4256690 4596546 Noca_4032 Nocardioides sp. JS614 microcompartments protein YP_925216.1 4256034 R 196162 CDS YP_925217.1 119718252 4596547 complement(4256690..4257712) 1 NC_008699.1 PFAM: Ethanolamine ammonia-lyase light chain; KEGG: dsy:DSY4961 hypothetical protein; ethanolamine ammonia-lyase light chain 4257712 4596547 Noca_4033 Nocardioides sp. JS614 ethanolamine ammonia-lyase light chain YP_925217.1 4256690 R 196162 CDS YP_925218.1 119718253 4596548 complement(4257727..4259094) 1 NC_008699.1 PFAM: Ethanolamine ammonia lyase large subunit; KEGG: ctc:CTC02176 ethanolamine ammonia-lyase heavy chain; ethanolamine ammonia-lyase heavy chain 4259094 4596548 Noca_4034 Nocardioides sp. JS614 ethanolamine ammonia-lyase heavy chain YP_925218.1 4257727 R 196162 CDS YP_925219.1 119718254 4596549 complement(4259125..4260561) 1 NC_008699.1 ethanolamine utilization protein EutA; reactivating factor for ethanolamine ammonia lyase 4260561 eutA 4596549 eutA Nocardioides sp. JS614 reactivating factor for ethanolamine ammonia lyase YP_925219.1 4259125 R 196162 CDS YP_925220.1 119718255 4596550 complement(4260568..4260858) 1 NC_008699.1 PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: rba:RB2581 probable ethanolamine utilization protein EutN; ethanolamine utilization protein EutN/carboxysome structural protein Ccml 4260858 4596550 Noca_4036 Nocardioides sp. JS614 ethanolamine utilization protein EutN/carboxysome structural protein Ccml YP_925220.1 4260568 R 196162 CDS YP_925221.1 119718256 4596551 complement(4260860..4262320) 1 NC_008699.1 TIGRFAM: ethanolamine transproter; PFAM: amino acid permease-associated region; KEGG: rxy:Rxyl_3197 ethanolamine permease; ethanolamine transporter 4262320 4596551 Noca_4037 Nocardioides sp. JS614 ethanolamine transporter YP_925221.1 4260860 R 196162 CDS YP_925222.1 119718257 4596552 4262576..4263247 1 NC_008699.1 PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: mta:Moth_2487 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase 4263247 4596552 Noca_4038 Nocardioides sp. JS614 4-diphosphocytidyl-2C-methyl-D-erythritol synthase YP_925222.1 4262576 D 196162 CDS YP_925223.1 119718258 4596553 complement(4263204..4263806) 1 NC_008699.1 KEGG: fra:Francci3_4254 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; hypothetical protein 4263806 4596553 Noca_4039 Nocardioides sp. JS614 hypothetical protein YP_925223.1 4263204 R 196162 CDS YP_925224.1 119718259 4596554 complement(4263890..4264375) 1 NC_008699.1 PFAM: transcription factor CarD; KEGG: pac:PPA0357 putative transcriptional regulator; CarD family transcriptional regulator 4264375 4596554 Noca_4040 Nocardioides sp. JS614 CarD family transcriptional regulator YP_925224.1 4263890 R 196162 CDS YP_925225.1 119718260 4596555 4264618..4265490 1 NC_008699.1 KEGG: fal:FRAAL6457 putative integral membrane protein; hypothetical protein 4265490 4596555 Noca_4041 Nocardioides sp. JS614 hypothetical protein YP_925225.1 4264618 D 196162 CDS YP_925226.1 119718261 4596556 4265585..4266127 1 NC_008699.1 hypothetical protein 4266127 4596556 Noca_4042 Nocardioides sp. JS614 hypothetical protein YP_925226.1 4265585 D 196162 CDS YP_925227.1 119718262 4596557 4266159..4266902 1 NC_008699.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 4266902 gpmA 4596557 gpmA Nocardioides sp. JS614 phosphoglyceromutase YP_925227.1 4266159 D 196162 CDS YP_925228.1 119718263 4596558 complement(4267419..4268135) 1 NC_008699.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: pac:PPA0361 putative phosphate transport system protein; phosphate uptake regulator PhoU 4268135 4596558 Noca_4044 Nocardioides sp. JS614 phosphate uptake regulator PhoU YP_925228.1 4267419 R 196162 CDS YP_925229.1 119718264 4596559 4268193..4269347 1 NC_008699.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: sma:SAV3973 putative two-component system sensor kinase; ATPase domain-containing protein 4269347 4596559 Noca_4045 Nocardioides sp. JS614 ATPase domain-containing protein YP_925229.1 4268193 D 196162 CDS YP_925230.1 119718265 4596560 4269344..4270021 1 NC_008699.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sco:SCO4230 putative response regulator; response regulator receiver 4270021 4596560 Noca_4046 Nocardioides sp. JS614 response regulator receiver YP_925230.1 4269344 D 196162 CDS YP_925231.1 119718266 4596561 4270214..4271152 1 NC_008699.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: sco:SCO1704 integral membrane conserved hypothetical protein; hypothetical protein 4271152 4596561 Noca_4047 Nocardioides sp. JS614 hypothetical protein YP_925231.1 4270214 D 196162 CDS YP_925232.1 119718267 4596562 4271226..4272896 1 NC_008699.1 PFAM: ABC-1 domain protein; KEGG: xac:XAC0422 ABC transporter substrate binding protein; hypothetical protein 4272896 4596562 Noca_4048 Nocardioides sp. JS614 hypothetical protein YP_925232.1 4271226 D 196162 CDS YP_925233.1 119718268 4596563 complement(4272881..4273480) 1 NC_008699.1 KEGG: sco:SCO4205 hypothetical protein; hypothetical protein 4273480 4596563 Noca_4049 Nocardioides sp. JS614 hypothetical protein YP_925233.1 4272881 R 196162 CDS YP_925234.1 119718269 4596564 complement(4273477..4274853) 1 NC_008699.1 PFAM: glycosyl transferase, group 1; KEGG: sma:SAV4006 glycosyl transferase; group 1 glycosyl transferase 4274853 4596564 Noca_4050 Nocardioides sp. JS614 group 1 glycosyl transferase YP_925234.1 4273477 R 196162 CDS YP_925235.1 119718270 4596565 complement(4274843..4275226) 1 NC_008699.1 hypothetical protein 4275226 4596565 Noca_4051 Nocardioides sp. JS614 hypothetical protein YP_925235.1 4274843 R 196162 CDS YP_925236.1 119718271 4596566 4275325..4276071 1 NC_008699.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sco:SCO3298 putative oxidoreductase; short-chain dehydrogenase/reductase SDR 4276071 4596566 Noca_4052 Nocardioides sp. JS614 short-chain dehydrogenase/reductase SDR YP_925236.1 4275325 D 196162 CDS YP_925237.1 119718272 4596567 complement(4276228..4277028) 1 NC_008699.1 hypothetical protein 4277028 4596567 Noca_4053 Nocardioides sp. JS614 hypothetical protein YP_925237.1 4276228 R 196162 CDS YP_925238.1 119718273 4596568 complement(4277025..4277609) 1 NC_008699.1 hypothetical protein 4277609 4596568 Noca_4054 Nocardioides sp. JS614 hypothetical protein YP_925238.1 4277025 R 196162 CDS YP_925239.1 119718274 4596569 4277676..4278365 1 NC_008699.1 TIGRFAM: aspartate racemase; PFAM: Asp/Glu racemase; KEGG: ccr:CC3278 aspartate racemase; aspartate racemase 4278365 4596569 Noca_4055 Nocardioides sp. JS614 aspartate racemase YP_925239.1 4277676 D 196162 CDS YP_925240.1 119718275 4596570 complement(4278426..4279718) 1 NC_008699.1 PFAM: peptidase M4, thermolysin; Peptidase M4, thermolysin; KEGG: bbr:BB2878 putative metalloprotease; peptidase M4, thermolysin 4279718 4596570 Noca_4056 Nocardioides sp. JS614 peptidase M4, thermolysin YP_925240.1 4278426 R 196162 CDS YP_925241.1 119718276 4596571 complement(4279731..4282463) 1 NC_008699.1 KEGG: cch:Cag_1235 hypothetical protein; hypothetical protein 4282463 4596571 Noca_4057 Nocardioides sp. JS614 hypothetical protein YP_925241.1 4279731 R 196162 CDS YP_925242.1 119718277 4596572 complement(4282593..4283147) 1 NC_008699.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: rha:RHA1_ro05058 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like protein 4283147 4596572 Noca_4058 Nocardioides sp. JS614 pyridoxamine 5'-phosphate oxidase-like protein YP_925242.1 4282593 R 196162 CDS YP_925243.1 119718278 4596573 complement(4283200..4284963) 1 NC_008699.1 KEGG: cch:Cag_1235 hypothetical protein; hypothetical protein 4284963 4596573 Noca_4059 Nocardioides sp. JS614 hypothetical protein YP_925243.1 4283200 R 196162 CDS YP_925244.1 119718279 4596574 4285072..4286967 1 NC_008699.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: tfu:Tfu_2456 small GTP-binding protein domain:GTP-binding protein TypA; GTP-binding protein TypA 4286967 4596574 Noca_4060 Nocardioides sp. JS614 GTP-binding protein TypA YP_925244.1 4285072 D 196162 CDS YP_925245.1 119718280 4596575 4287204..4288634 1 NC_008699.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sfr:Sfri_3690 flavocytochrome c; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 4288634 4596575 Noca_4061 Nocardioides sp. JS614 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_925245.1 4287204 D 196162 CDS YP_925246.1 119718281 4596576 complement(4288713..4289882) 1 NC_008699.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: sco:SCO3051 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 4289882 4596576 Noca_4062 Nocardioides sp. JS614 acyl-CoA dehydrogenase domain-containing protein YP_925246.1 4288713 R 196162 CDS YP_925247.1 119718282 4596577 complement(4289939..4290667) 1 NC_008699.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: mta:Moth_2304 GntR-like; GntR family transcriptional regulator 4290667 4596577 Noca_4063 Nocardioides sp. JS614 GntR family transcriptional regulator YP_925247.1 4289939 R 196162 CDS YP_925248.1 119718283 4596578 4290861..4291382 1 NC_008699.1 PFAM: MaoC domain protein dehydratase; KEGG: pol:Bpro_5294 MaoC-like dehydratase; dehydratase 4291382 4596578 Noca_4064 Nocardioides sp. JS614 dehydratase YP_925248.1 4290861 D 196162 CDS YP_925249.1 119718284 4596579 4291386..4292420 1 NC_008699.1 PFAM: luciferase family protein; KEGG: mmc:Mmcs_3213 luciferase-like protein; luciferase family protein 4292420 4596579 Noca_4065 Nocardioides sp. JS614 luciferase family protein YP_925249.1 4291386 D 196162 CDS YP_925250.1 119718285 4596580 4292417..4293646 1 NC_008699.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bxe:Bxe_A4084 putative L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 4293646 4596580 Noca_4066 Nocardioides sp. JS614 L-carnitine dehydratase/bile acid-inducible protein F YP_925250.1 4292417 D 196162 CDS YP_925251.1 119718286 4596581 4293643..4295049 1 NC_008699.1 PFAM: MmgE/PrpD family protein; KEGG: bur:Bcep18194_B1168 MmgE/PrpD family protein; MmgE/PrpD family protein 4295049 4596581 Noca_4067 Nocardioides sp. JS614 MmgE/PrpD family protein YP_925251.1 4293643 D 196162 CDS YP_925252.1 119718287 4596582 4295052..4296269 1 NC_008699.1 PFAM: Endoribonuclease L-PSP; KEGG: bbr:BB1154 hypothetical protein; endoribonuclease L-PSP 4296269 4596582 Noca_4068 Nocardioides sp. JS614 endoribonuclease L-PSP YP_925252.1 4295052 D 196162 CDS YP_925253.1 119718288 4596583 4296266..4296766 1 NC_008699.1 KEGG: mpa:MAP1460 hypothetical protein; hypothetical protein 4296766 4596583 Noca_4069 Nocardioides sp. JS614 hypothetical protein YP_925253.1 4296266 D 196162 CDS YP_925254.1 119718289 4596584 4296763..4297206 1 NC_008699.1 PFAM: MaoC domain protein dehydratase; KEGG: deh:cbdb_A489 hypothetical protein; dehydratase 4297206 4596584 Noca_4070 Nocardioides sp. JS614 dehydratase YP_925254.1 4296763 D 196162 CDS YP_925255.1 119718290 4596585 4297203..4298351 1 NC_008699.1 KEGG: pol:Bpro_5279 thiolase; thiolase 4298351 4596585 Noca_4071 Nocardioides sp. JS614 thiolase YP_925255.1 4297203 D 196162 CDS YP_925256.1 119718291 4596586 4298348..4298776 1 NC_008699.1 PFAM: protein of unknown function DUF35; KEGG: rha:RHA1_ro05826 hypothetical protein; hypothetical protein 4298776 4596586 Noca_4072 Nocardioides sp. JS614 hypothetical protein YP_925256.1 4298348 D 196162 CDS YP_925257.1 119718292 4596587 4298773..4299933 1 NC_008699.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: bxe:Bxe_A4085 putative acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 4299933 4596587 Noca_4073 Nocardioides sp. JS614 acyl-CoA dehydrogenase domain-containing protein YP_925257.1 4298773 D 196162 CDS YP_925258.1 119718293 4596588 4299933..4300796 1 NC_008699.1 converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase 4300796 4596588 Noca_4074 Nocardioides sp. JS614 3-hydroxybutyryl-CoA dehydrogenase YP_925258.1 4299933 D 196162 CDS YP_925259.1 119718294 4596589 complement(4300781..4302235) 1 NC_008699.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sfr:Sfri_2586 flavocytochrome c; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 4302235 4596589 Noca_4075 Nocardioides sp. JS614 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_925259.1 4300781 R 196162 CDS YP_925260.1 119718295 4596590 complement(4302335..4304494) 1 NC_008699.1 KEGG: ade:Adeh_0244 LigA; hypothetical protein 4304494 4596590 Noca_4076 Nocardioides sp. JS614 hypothetical protein YP_925260.1 4302335 R 196162 CDS YP_925261.1 119718296 4596591 complement(4304586..4306061) 1 NC_008699.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ctc:CTC00811 fumarate reductase flavoprotein subunit precursor; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 4306061 4596591 Noca_4077 Nocardioides sp. JS614 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_925261.1 4304586 R 196162 CDS YP_925262.1 119718297 4596592 complement(4306058..4306891) 1 NC_008699.1 hypothetical protein 4306891 4596592 Noca_4078 Nocardioides sp. JS614 hypothetical protein YP_925262.1 4306058 R 196162 CDS YP_925263.1 119718298 4596593 complement(4306928..4307779) 1 NC_008699.1 PFAM: HpcH/HpaI aldolase; KEGG: rxy:Rxyl_0366 citryl-CoA lyase; HpcH/HpaI aldolase 4307779 4596593 Noca_4079 Nocardioides sp. JS614 HpcH/HpaI aldolase YP_925263.1 4306928 R 196162 CDS YP_925264.1 119718299 4596594 4307925..4309310 1 NC_008699.1 PFAM: major facilitator superfamily MFS_1; KEGG: fal:FRAAL0582 putative efflux membrane protein (partial match); major facilitator transporter 4309310 4596594 Noca_4080 Nocardioides sp. JS614 major facilitator transporter YP_925264.1 4307925 D 196162 CDS YP_925265.1 119718300 4596595 complement(4309303..4310211) 1 NC_008699.1 PFAM: alpha/beta hydrolase fold; KEGG: hne:HNE_1214 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold protein 4310211 4596595 Noca_4081 Nocardioides sp. JS614 alpha/beta hydrolase fold protein YP_925265.1 4309303 R 196162 CDS YP_925266.1 119718301 4596596 complement(4310245..4311825) 1 NC_008699.1 PFAM: extracellular solute-binding protein, family 5; KEGG: bcl:ABC1605 oligopeptide ABC transporter substrate-binding protein; extracellular solute-binding protein 4311825 4596596 Noca_4082 Nocardioides sp. JS614 extracellular solute-binding protein YP_925266.1 4310245 R 196162 CDS YP_925267.1 119718302 4596597 4312060..4313256 1 NC_008699.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: sco:SCO2032 hypothetical protein; L-carnitine dehydratase/bile acid-inducible protein F 4313256 4596597 Noca_4083 Nocardioides sp. JS614 L-carnitine dehydratase/bile acid-inducible protein F YP_925267.1 4312060 D 196162 CDS YP_925268.1 119718303 4596598 4313314..4314156 1 NC_008699.1 PFAM: cyclase family protein; KEGG: rxy:Rxyl_0367 putative cyclase; cyclase family protein 4314156 4596598 Noca_4084 Nocardioides sp. JS614 cyclase family protein YP_925268.1 4313314 D 196162 CDS YP_925269.1 119718304 4596599 4314149..4315579 1 NC_008699.1 PFAM: MmgE/PrpD family protein; KEGG: rxy:Rxyl_0368 MmgE/PrpD; MmgE/PrpD family protein 4315579 4596599 Noca_4085 Nocardioides sp. JS614 MmgE/PrpD family protein YP_925269.1 4314149 D 196162 CDS YP_925270.1 119718305 4596600 4315576..4317042 1 NC_008699.1 PFAM: amidohydrolase; KEGG: ana:alr5010 D-hydantoinase; amidohydrolase 4317042 4596600 Noca_4086 Nocardioides sp. JS614 amidohydrolase YP_925270.1 4315576 D 196162 CDS YP_925271.1 119718306 4596601 complement(4317128..4318798) 1 NC_008699.1 KEGG: pat:Patl_2766 alpha/beta hydrolase fold; alpha/beta fold family hydrolase/acetyltransferase 4318798 4596601 Noca_4087 Nocardioides sp. JS614 alpha/beta fold family hydrolase/acetyltransferase YP_925271.1 4317128 R 196162 CDS YP_925272.1 119718307 4596602 4318969..4319901 1 NC_008699.1 hypothetical protein 4319901 4596602 Noca_4088 Nocardioides sp. JS614 hypothetical protein YP_925272.1 4318969 D 196162 CDS YP_925273.1 119718308 4596603 4319898..4320602 1 NC_008699.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sco:SCO2490 dehydrogenase (secreted protein); short-chain dehydrogenase/reductase SDR 4320602 4596603 Noca_4089 Nocardioides sp. JS614 short-chain dehydrogenase/reductase SDR YP_925273.1 4319898 D 196162 CDS YP_925274.1 119718309 4596604 complement(4320731..4321807) 1 NC_008699.1 KEGG: ttj:TTHA0473 peptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 4321807 4596604 Noca_4090 Nocardioides sp. JS614 oligopeptide/dipeptide ABC transporter ATPase YP_925274.1 4320731 R 196162 CDS YP_925275.1 119718310 4596605 complement(4321804..4322823) 1 NC_008699.1 KEGG: bxe:Bxe_A0185 ABC dipeptide/oligopeptide/nickel transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 4322823 4596605 Noca_4091 Nocardioides sp. JS614 oligopeptide/dipeptide ABC transporter ATPase YP_925275.1 4321804 R 196162 CDS YP_925276.1 119718311 4596606 complement(4322810..4323850) 1 NC_008699.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC1242 oligopeptide ABC transporter permease; binding-protein-dependent transport system inner membrane protein 4323850 4596606 Noca_4092 Nocardioides sp. JS614 binding-protein-dependent transport system inner membrane protein YP_925276.1 4322810 R 196162 CDS YP_925277.1 119718312 4596607 complement(4323847..4324812) 1 NC_008699.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: psp:PSPPH_2785 ABC-transport protein, inner membrane component; binding-protein-dependent transport systems inner membrane component 4324812 4596607 Noca_4093 Nocardioides sp. JS614 binding-protein-dependent transport systems inner membrane component YP_925277.1 4323847 R 196162 CDS YP_925278.1 119718313 4596608 complement(4325003..4326019) 1 NC_008699.1 hypothetical protein 4326019 4596608 Noca_4094 Nocardioides sp. JS614 hypothetical protein YP_925278.1 4325003 R 196162 CDS YP_925279.1 119718314 4596609 complement(4326187..4326996) 1 NC_008699.1 PFAM: regulatory proteins, IclR; KEGG: rxy:Rxyl_0364 transcriptional regulator, IclR family; IclR family transcriptional regulator 4326996 4596609 Noca_4095 Nocardioides sp. JS614 IclR family transcriptional regulator YP_925279.1 4326187 R 196162 CDS YP_925280.1 119718315 4596610 4327298..4328824 1 NC_008699.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rxy:Rxyl_0353 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 4328824 4596610 Noca_4096 Nocardioides sp. JS614 AMP-dependent synthetase and ligase YP_925280.1 4327298 D 196162 CDS YP_925281.1 119718316 4596611 4328844..4329575 1 NC_008699.1 KEGG: pat:Patl_3828 hypothetical protein; hypothetical protein 4329575 4596611 Noca_4097 Nocardioides sp. JS614 hypothetical protein YP_925281.1 4328844 D 196162 CDS YP_925282.1 119718317 4596612 complement(4329606..4330166) 1 NC_008699.1 hypothetical protein 4330166 4596612 Noca_4098 Nocardioides sp. JS614 hypothetical protein YP_925282.1 4329606 R 196162 CDS YP_925283.1 119718318 4596613 4330286..4331305 1 NC_008699.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; KEGG: ava:Ava_4427 zinc-containing alcohol dehydrogenase superfamily; alcohol dehydrogenase 4331305 4596613 Noca_4099 Nocardioides sp. JS614 alcohol dehydrogenase YP_925283.1 4330286 D 196162 CDS YP_925284.1 119718319 4596614 complement(4331326..4332777) 1 NC_008699.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: mma:MM2279 N-ethylammeline chlorohydrolase; amidohydrolase 4332777 4596614 Noca_4100 Nocardioides sp. JS614 amidohydrolase YP_925284.1 4331326 R 196162 CDS YP_925285.1 119718320 4596615 complement(4332774..4333322) 1 NC_008699.1 hypothetical protein 4333322 4596615 Noca_4101 Nocardioides sp. JS614 hypothetical protein YP_925285.1 4332774 R 196162 CDS YP_925286.1 119718321 4596616 complement(4333319..4334068) 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mta:Moth_2498 ABC transporter related; ABC transporter-like protein 4334068 4596616 Noca_4102 Nocardioides sp. JS614 ABC transporter-like protein YP_925286.1 4333319 R 196162 CDS YP_925287.1 119718322 4596617 complement(4334065..4335813) 1 NC_008699.1 PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: bpe:BP0620 branched-chain amino acid ABC transporter, permease protein; ABC transporter-like protein 4335813 4596617 Noca_4103 Nocardioides sp. JS614 ABC transporter-like protein YP_925287.1 4334065 R 196162 CDS YP_925288.1 119718323 4596618 complement(4335890..4336762) 1 NC_008699.1 PFAM: inner-membrane translocator; KEGG: bpa:BPP0593 putative branched-chain amino acid transport system permease protein; inner-membrane translocator 4336762 4596618 Noca_4104 Nocardioides sp. JS614 inner-membrane translocator YP_925288.1 4335890 R 196162 CDS YP_925289.1 119718324 4596619 complement(4336855..4338078) 1 NC_008699.1 PFAM: Extracellular ligand-binding receptor; KEGG: rso:RS01985 probable amino acid-binding periplasmic (pbp) ABC transporter protein; extracellular ligand-binding receptor 4338078 4596619 Noca_4105 Nocardioides sp. JS614 extracellular ligand-binding receptor YP_925289.1 4336855 R 196162 CDS YP_925290.1 119718325 4596620 complement(4338230..4339627) 1 NC_008699.1 PFAM: amidohydrolase; KEGG: aor:AO090001000163 atrazine chlorohydrolase/guanine deaminase Pfam: A_deaminase Amidohydro_3 Amidohydro_1; amidohydrolase 4339627 4596620 Noca_4106 Nocardioides sp. JS614 amidohydrolase YP_925290.1 4338230 R 196162 CDS YP_925291.1 119718326 4596621 complement(4340083..4340874) 1 NC_008699.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: gme:Gmet_2224 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase 4340874 4596621 Noca_4107 Nocardioides sp. JS614 enoyl-CoA hydratase YP_925291.1 4340083 R 196162 CDS YP_925292.1 119718327 4596622 complement(4340894..4341112) 1 NC_008699.1 PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: pst:PSPTO_4243 UreA amidolyase-related protein; biotin/lipoyl attachment domain-containing protein 4341112 4596622 Noca_4108 Nocardioides sp. JS614 biotin/lipoyl attachment domain-containing protein YP_925292.1 4340894 R 196162 CDS YP_925293.1 119718328 4596623 complement(4341191..4341643) 1 NC_008699.1 PFAM: MaoC domain protein dehydratase; KEGG: tth:TTC0237 dehydrogenase; dehydratase 4341643 4596623 Noca_4109 Nocardioides sp. JS614 dehydratase YP_925293.1 4341191 R 196162 CDS YP_925294.1 119718329 4596624 complement(4341650..4342447) 1 NC_008699.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: fal:FRAAL2628 putative enoyl-CoA hydratase/isomerase, involved in phenylacetic acid degradation; short chain enoyl-CoA hydratase 4342447 4596624 Noca_4110 Nocardioides sp. JS614 short chain enoyl-CoA hydratase YP_925294.1 4341650 R 196162 CDS YP_925295.1 119718330 4596625 4342560..4343195 1 NC_008699.1 PFAM: regulatory protein, TetR; KEGG: rha:RHA1_ro02343 probable transcriptional regulator, TetR family; regulatory protein TetR 4343195 4596625 Noca_4111 Nocardioides sp. JS614 regulatory protein TetR YP_925295.1 4342560 D 196162 CDS YP_925296.1 119718331 4596626 complement(4343247..4343972) 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_0356 ABC transporter related; ABC transporter-like protein 4343972 4596626 Noca_4112 Nocardioides sp. JS614 ABC transporter-like protein YP_925296.1 4343247 R 196162 CDS YP_925297.1 119718332 4596627 complement(4343969..4344712) 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_0111 ABC transporter related; ABC transporter-like protein 4344712 4596627 Noca_4113 Nocardioides sp. JS614 ABC transporter-like protein YP_925297.1 4343969 R 196162 CDS YP_925298.1 119718333 4596628 complement(4344709..4345674) 1 NC_008699.1 PFAM: inner-membrane translocator; KEGG: tde:TDE2365 high-affinity branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator 4345674 4596628 Noca_4114 Nocardioides sp. JS614 inner-membrane translocator YP_925298.1 4344709 R 196162 CDS YP_925299.1 119718334 4596629 complement(4345671..4346534) 1 NC_008699.1 PFAM: inner-membrane translocator; KEGG: bpa:BPP0593 putative branched-chain amino acid transport system permease protein; inner-membrane translocator 4346534 4596629 Noca_4115 Nocardioides sp. JS614 inner-membrane translocator YP_925299.1 4345671 R 196162 CDS YP_925300.1 119718335 4596630 complement(4346531..4348030) 1 NC_008699.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rxy:Rxyl_0353 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 4348030 4596630 Noca_4116 Nocardioides sp. JS614 AMP-dependent synthetase and ligase YP_925300.1 4346531 R 196162 CDS YP_925301.1 119718336 4596631 complement(4348035..4349210) 1 NC_008699.1 PFAM: Extracellular ligand-binding receptor; KEGG: bxe:Bxe_B1023 ABC branched chain amino acid family transporter, periplasmic ligand binding protein; extracellular ligand-binding receptor 4349210 4596631 Noca_4117 Nocardioides sp. JS614 extracellular ligand-binding receptor YP_925301.1 4348035 R 196162 CDS YP_925302.1 119718337 4596632 4349455..4350681 1 NC_008699.1 PFAM: beta-ketoacyl synthase; KEGG: cya:CYA_2873 3-oxoacyl-[acyl-carrier-protein] synthase II; beta-ketoacyl synthase 4350681 4596632 Noca_4118 Nocardioides sp. JS614 beta-ketoacyl synthase YP_925302.1 4349455 D 196162 CDS YP_925303.1 119718338 4596633 4350678..4351079 1 NC_008699.1 KEGG: ccr:CC2307 hypothetical protein; hypothetical protein 4351079 4596633 Noca_4119 Nocardioides sp. JS614 hypothetical protein YP_925303.1 4350678 D 196162 CDS YP_925304.1 119718339 4596634 4351119..4352051 1 NC_008699.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro04654 3-oxoacyl-[acyl-carrier-protein] reductase; short-chain dehydrogenase/reductase SDR 4352051 4596634 Noca_4120 Nocardioides sp. JS614 short-chain dehydrogenase/reductase SDR YP_925304.1 4351119 D 196162 CDS YP_925305.1 119718340 4596635 4352098..4353780 1 NC_008699.1 PFAM: AMP-dependent synthetase and ligase; KEGG: tfu:Tfu_1300 DitJ-like CoA ligase (AMP forming), possibly related to diterpenoid metabolism; AMP-dependent synthetase and ligase 4353780 4596635 Noca_4121 Nocardioides sp. JS614 AMP-dependent synthetase and ligase YP_925305.1 4352098 D 196162 CDS YP_925306.1 119718341 4596636 4353777..4354622 1 NC_008699.1 PFAM: inner-membrane translocator; KEGG: bbr:BB4292 branched-chain amino acid transport system permease; inner-membrane translocator 4354622 4596636 Noca_4122 Nocardioides sp. JS614 inner-membrane translocator YP_925306.1 4353777 D 196162 CDS YP_925307.1 119718342 4596637 4354619..4355677 1 NC_008699.1 PFAM: inner-membrane translocator; KEGG: gsu:GSU1732 branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator 4355677 4596637 Noca_4123 Nocardioides sp. JS614 inner-membrane translocator YP_925307.1 4354619 D 196162 CDS YP_925308.1 119718343 4596638 4355674..4356438 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpe:RPE_3782 ABC transporter related; ABC transporter-like protein 4356438 4596638 Noca_4124 Nocardioides sp. JS614 ABC transporter-like protein YP_925308.1 4355674 D 196162 CDS YP_925309.1 119718344 4596639 4356435..4357142 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO7182 putative branched amino acid transport system ATP-binding protein; ABC transporter-like protein 4357142 4596639 Noca_4125 Nocardioides sp. JS614 ABC transporter-like protein YP_925309.1 4356435 D 196162 CDS YP_925310.1 119718345 4596640 4357139..4358284 1 NC_008699.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rha:RHA1_ro08152 probable fatty acid-CoA racemase; L-carnitine dehydratase/bile acid-inducible protein F 4358284 4596640 Noca_4126 Nocardioides sp. JS614 L-carnitine dehydratase/bile acid-inducible protein F YP_925310.1 4357139 D 196162 CDS YP_925311.1 119718346 4596641 complement(4358432..4359634) 1 NC_008699.1 PFAM: Extracellular ligand-binding receptor; KEGG: chy:CHY_2238 high affinity branched-chain amino acid ABC transporter, amino acid-binding protein; extracellular ligand-binding receptor 4359634 4596641 Noca_4127 Nocardioides sp. JS614 extracellular ligand-binding receptor YP_925311.1 4358432 R 196162 CDS YP_925312.1 119718347 4596642 complement(4359715..4360773) 1 NC_008699.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: fal:FRAAL3878 putative acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 4360773 4596642 Noca_4128 Nocardioides sp. JS614 acyl-CoA dehydrogenase domain-containing protein YP_925312.1 4359715 R 196162 CDS YP_925313.1 119718348 4596643 complement(4360770..4361846) 1 NC_008699.1 PFAM: aminoglycoside phosphotransferase; KEGG: rxy:Rxyl_2337 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 4361846 4596643 Noca_4129 Nocardioides sp. JS614 aminoglycoside phosphotransferase YP_925313.1 4360770 R 196162 CDS YP_925314.1 119718349 4596644 complement(4361843..4363156) 1 NC_008699.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: mpa:MAP3122 FadE1_2; acyl-CoA dehydrogenase domain-containing protein 4363156 4596644 Noca_4130 Nocardioides sp. JS614 acyl-CoA dehydrogenase domain-containing protein YP_925314.1 4361843 R 196162 CDS YP_925315.1 119718350 4596645 complement(4363208..4364356) 1 NC_008699.1 KEGG: nfa:nfa22710 putative lipid-transfer protein; putative lipid-transfer protein 4364356 4596645 Noca_4131 Nocardioides sp. JS614 putative lipid-transfer protein YP_925315.1 4363208 R 196162 CDS YP_925316.1 119718351 4596646 complement(4364359..4364808) 1 NC_008699.1 PFAM: protein of unknown function DUF35; KEGG: mpa:MAP0797 hypothetical protein; hypothetical protein 4364808 4596646 Noca_4132 Nocardioides sp. JS614 hypothetical protein YP_925316.1 4364359 R 196162 CDS YP_925317.1 119718352 4596647 complement(4364838..4365650) 1 NC_008699.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: nfa:nfa25020 putative short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 4365650 4596647 Noca_4133 Nocardioides sp. JS614 short-chain dehydrogenase/reductase SDR YP_925317.1 4364838 R 196162 CDS YP_925318.1 119718353 4596648 complement(4365647..4366888) 1 NC_008699.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rha:RHA1_ro07066 probable acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 4366888 4596648 Noca_4134 Nocardioides sp. JS614 acyl-CoA dehydrogenase domain-containing protein YP_925318.1 4365647 R 196162 CDS YP_925319.1 119718354 4596649 complement(4366885..4367352) 1 NC_008699.1 PFAM: MaoC domain protein dehydratase; KEGG: sma:SAV6603 hypothetical protein; dehydratase 4367352 4596649 Noca_4135 Nocardioides sp. JS614 dehydratase YP_925319.1 4366885 R 196162 CDS YP_925320.1 119718355 4596650 complement(4367349..4368917) 1 NC_008699.1 PFAM: carboxyl transferase; KEGG: ade:Adeh_0250 carboxyl transferase; propionyl-CoA carboxylase 4368917 4596650 Noca_4136 Nocardioides sp. JS614 propionyl-CoA carboxylase YP_925320.1 4367349 R 196162 CDS YP_925321.1 119718356 4596651 4369039..4370703 1 NC_008699.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rpa:RPA0464 putative long-chain fatty-acid-CoA ligase; AMP-dependent synthetase and ligase 4370703 4596651 Noca_4137 Nocardioides sp. JS614 AMP-dependent synthetase and ligase YP_925321.1 4369039 D 196162 CDS YP_925322.1 119718357 4596652 4370700..4371674 1 NC_008699.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: mmc:Mmcs_4067 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 4371674 4596652 Noca_4138 Nocardioides sp. JS614 2-nitropropane dioxygenase YP_925322.1 4370700 D 196162 CDS YP_925323.1 119718358 4596653 4371667..4372464 1 NC_008699.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 4372464 4596653 Noca_4139 Nocardioides sp. JS614 enoyl-CoA hydratase YP_925323.1 4371667 D 196162 CDS YP_925324.1 119718359 4596654 4372454..4372993 1 NC_008699.1 KEGG: nfa:nfa27940 hypothetical protein; hypothetical protein 4372993 4596654 Noca_4140 Nocardioides sp. JS614 hypothetical protein YP_925324.1 4372454 D 196162 CDS YP_925325.1 119718360 4596655 complement(4372974..4373723) 1 NC_008699.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: tfu:Tfu_1259 enoyl-CoA hydratase/isomerase-like protein; enoyl-CoA hydratase 4373723 4596655 Noca_4141 Nocardioides sp. JS614 enoyl-CoA hydratase YP_925325.1 4372974 R 196162 CDS YP_925326.1 119718361 4596656 complement(4373723..4374916) 1 NC_008699.1 KEGG: rha:RHA1_ro01876 acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; acetyl-CoA acetyltransferase 4374916 4596656 Noca_4142 Nocardioides sp. JS614 acetyl-CoA acetyltransferase YP_925326.1 4373723 R 196162 CDS YP_925327.1 119718362 4596657 4375027..4378158 1 NC_008699.1 KEGG: tfu:Tfu_2811 methylmalonyl-CoA mutase, N-terminal; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: ArgK protein; methylmalonyl-CoA mutase; cobalamin B12-binding domain protein; methylmalonyl-CoA mutase large subunit 4378158 4596657 Noca_4143 Nocardioides sp. JS614 methylmalonyl-CoA mutase large subunit YP_925327.1 4375027 D 196162 CDS YP_925328.1 119718363 4596658 complement(4378177..4378641) 1 NC_008699.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: mca:MCA1307 cytosine deaminase; cytosine deaminase 4378641 4596658 Noca_4144 Nocardioides sp. JS614 cytosine deaminase YP_925328.1 4378177 R 196162 CDS YP_925329.1 119718364 4596659 complement(4378678..4379577) 1 NC_008699.1 PFAM: inner-membrane translocator; KEGG: mlo:mll4174 sugar ABC transporter, permease protein, rbsC-2; inner-membrane translocator 4379577 4596659 Noca_4145 Nocardioides sp. JS614 inner-membrane translocator YP_925329.1 4378678 R 196162 CDS YP_925330.1 119718365 4596660 complement(4379574..4380674) 1 NC_008699.1 PFAM: inner-membrane translocator; KEGG: sme:SMa2367 putative ABC transporter, permease; inner-membrane translocator 4380674 4596660 Noca_4146 Nocardioides sp. JS614 inner-membrane translocator YP_925330.1 4379574 R 196162 CDS YP_925331.1 119718366 4596661 complement(4380671..4382245) 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: jan:Jann_1303 ABC transporter related; ABC transporter-like protein 4382245 4596661 Noca_4147 Nocardioides sp. JS614 ABC transporter-like protein YP_925331.1 4380671 R 196162 CDS YP_925332.1 119718367 4596662 complement(4382242..4383315) 1 NC_008699.1 PFAM: basic membrane lipoprotein; KEGG: mlo:mll4178 hypothetical protein, contains weak similarity to membrane lipoprotein; basic membrane lipoprotein 4383315 4596662 Noca_4148 Nocardioides sp. JS614 basic membrane lipoprotein YP_925332.1 4382242 R 196162 CDS YP_925333.1 119718368 4596663 4383460..4384989 1 NC_008699.1 PFAM: purine catabolism PurC domain protein; KEGG: sco:SCO7033 regulatory protein; purine catabolism PurC domain-containing protein 4384989 4596663 Noca_4149 Nocardioides sp. JS614 purine catabolism PurC domain-containing protein YP_925333.1 4383460 D 196162 CDS YP_925334.1 119718369 4596664 4385067..4385579 1 NC_008699.1 KEGG: nfa:nfa27940 hypothetical protein; hypothetical protein 4385579 4596664 Noca_4150 Nocardioides sp. JS614 hypothetical protein YP_925334.1 4385067 D 196162 CDS YP_925335.1 119718370 4596665 complement(4385679..4386314) 1 NC_008699.1 hypothetical protein 4386314 4596665 Noca_4151 Nocardioides sp. JS614 hypothetical protein YP_925335.1 4385679 R 196162 CDS YP_925336.1 119718371 4596666 complement(4386370..4386975) 1 NC_008699.1 KEGG: mpa:MAP2481c hypothetical protein; hypothetical protein 4386975 4596666 Noca_4152 Nocardioides sp. JS614 hypothetical protein YP_925336.1 4386370 R 196162 CDS YP_925337.1 119718372 4596667 complement(4387071..4389662) 1 NC_008699.1 KEGG: noc:Noca_0728 hypothetical protein; hypothetical protein 4389662 4596667 Noca_4153 Nocardioides sp. JS614 hypothetical protein YP_925337.1 4387071 R 196162 CDS YP_925338.1 119718373 4596668 complement(4389713..4390405) 1 NC_008699.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: tfu:Tfu_1316 hypothetical protein; hypothetical protein 4390405 4596668 Noca_4154 Nocardioides sp. JS614 hypothetical protein YP_925338.1 4389713 R 196162 CDS YP_925339.1 119718374 4596669 complement(4390402..4390908) 1 NC_008699.1 KEGG: tfu:Tfu_1315 hypothetical protein; hypothetical protein 4390908 4596669 Noca_4155 Nocardioides sp. JS614 hypothetical protein YP_925339.1 4390402 R 196162 CDS YP_925340.1 119718375 4596670 complement(4390905..4391768) 1 NC_008699.1 KEGG: tfu:Tfu_1314 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS; dihydropteroate synthase 4391768 4596670 Noca_4156 Nocardioides sp. JS614 dihydropteroate synthase YP_925340.1 4390905 R 196162 CDS YP_925341.1 119718376 4596671 complement(4391765..4392664) 1 NC_008699.1 PFAM: glycosyl transferase, family 2; KEGG: tfu:Tfu_1732 hypothetical protein; putative glucosyl-3-phosphoglycerate synthase 4392664 4596671 Noca_4157 Nocardioides sp. JS614 putative glucosyl-3-phosphoglycerate synthase YP_925341.1 4391765 R 196162 CDS YP_925342.1 119718377 4596672 4392698..4393315 1 NC_008699.1 PFAM: regulatory protein, TetR; KEGG: fal:FRAAL2897 putative transcription regulator TetR/AcrR family; TetR family transcriptional regulator 4393315 4596672 Noca_4158 Nocardioides sp. JS614 TetR family transcriptional regulator YP_925342.1 4392698 D 196162 CDS YP_925343.1 119718378 4596673 complement(4393319..4394149) 1 NC_008699.1 KEGG: fra:Francci3_3007 hypothetical protein; hypothetical protein 4394149 4596673 Noca_4159 Nocardioides sp. JS614 hypothetical protein YP_925343.1 4393319 R 196162 CDS YP_925344.1 119718379 4596674 complement(4394302..4395081) 1 NC_008699.1 PFAM: cell wall hydrolase/autolysin; KEGG: fra:Francci3_1357 cell wall hydrolase/autolysin; cell wall hydrolase/autolysin 4395081 4596674 Noca_4160 Nocardioides sp. JS614 cell wall hydrolase/autolysin YP_925344.1 4394302 R 196162 CDS YP_925345.1 119718380 4596675 complement(4395081..4396085) 1 NC_008699.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; KEGG: pac:PPA0069 UDP-glucose 4-epimerase; UDP-galactose 4-epimerase 4396085 4596675 Noca_4161 Nocardioides sp. JS614 UDP-galactose 4-epimerase YP_925345.1 4395081 R 196162 CDS YP_925346.1 119718381 4596676 4396424..4396864 1 NC_008699.1 hypothetical protein 4396864 4596676 Noca_4162 Nocardioides sp. JS614 hypothetical protein YP_925346.1 4396424 D 196162 CDS YP_925347.1 119718382 4596677 complement(4396934..4397599) 1 NC_008699.1 hypothetical protein 4397599 4596677 Noca_4163 Nocardioides sp. JS614 hypothetical protein YP_925347.1 4396934 R 196162 CDS YP_925348.1 119718383 4596678 complement(4397589..4398023) 1 NC_008699.1 hypothetical protein 4398023 4596678 Noca_4164 Nocardioides sp. JS614 hypothetical protein YP_925348.1 4397589 R 196162 CDS YP_925349.1 119718384 4596679 complement(4398046..4398402) 1 NC_008699.1 hypothetical protein 4398402 4596679 Noca_4165 Nocardioides sp. JS614 hypothetical protein YP_925349.1 4398046 R 196162 CDS YP_925350.1 119718385 4596680 complement(4398409..4399623) 1 NC_008699.1 KEGG: ath:At4g01985 expressed protein; hypothetical protein 4399623 4596680 Noca_4166 Nocardioides sp. JS614 hypothetical protein YP_925350.1 4398409 R 196162 CDS YP_925351.1 119718386 4596681 complement(4399620..4399931) 1 NC_008699.1 hypothetical protein 4399931 4596681 Noca_4167 Nocardioides sp. JS614 hypothetical protein YP_925351.1 4399620 R 196162 CDS YP_925352.1 119718387 4596682 complement(4400083..4401927) 1 NC_008699.1 catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP; phosphoenolpyruvate carboxykinase 4401927 4596682 Noca_4168 Nocardioides sp. JS614 phosphoenolpyruvate carboxykinase YP_925352.1 4400083 R 196162 CDS YP_925353.1 119718388 4596683 4402035..4403414 1 NC_008699.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; sulphate transporter; KEGG: tfu:Tfu_0873 sulfate permease, SulP family; sulfate transporter/antisigma-factor antagonist STAS 4403414 4596683 Noca_4169 Nocardioides sp. JS614 sulfate transporter/antisigma-factor antagonist STAS YP_925353.1 4402035 D 196162 CDS YP_925354.1 119718389 4596684 complement(4403402..4403845) 1 NC_008699.1 PFAM: regulatory protein, MarR; regulatory protein, ArsR; KEGG: mmc:Mmcs_2643 transcriptional regulator, MarR family; MarR family transcriptional regulator 4403845 4596684 Noca_4170 Nocardioides sp. JS614 MarR family transcriptional regulator YP_925354.1 4403402 R 196162 CDS YP_925355.1 119718390 4596685 4403943..4406273 1 NC_008699.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sco:SCO7374 nitrate reductase NarB (fragment); molybdopterin oxidoreductase 4406273 4596685 Noca_4171 Nocardioides sp. JS614 molybdopterin oxidoreductase YP_925355.1 4403943 D 196162 CDS YP_925356.1 119718391 4596686 4406275..4406751 1 NC_008699.1 KEGG: mpa:MAP4100c hypothetical protein; hypothetical protein 4406751 4596686 Noca_4172 Nocardioides sp. JS614 hypothetical protein YP_925356.1 4406275 D 196162 CDS YP_925357.1 119718392 4596687 4406983..4407990 1 NC_008699.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro08310 short chain dehydrogenase; short chain dehydrogenase 4407990 4596687 Noca_4173 Nocardioides sp. JS614 short chain dehydrogenase YP_925357.1 4406983 D 196162 CDS YP_925358.1 119718393 4596688 4407987..4410989 1 NC_008699.1 PFAM: FAD linked oxidase domain protein; KEGG: sco:SCO5966 putative oxidase; FAD linked oxidase domain-containing protein 4410989 4596688 Noca_4174 Nocardioides sp. JS614 FAD linked oxidase domain-containing protein YP_925358.1 4407987 D 196162 CDS YP_925359.1 119718394 4596689 4410986..4412767 1 NC_008699.1 catalyzes the formation of acetate from pyruvate; thiamine pyrophosphate protein 4412767 4596689 Noca_4175 Nocardioides sp. JS614 thiamine pyrophosphate protein YP_925359.1 4410986 D 196162 CDS YP_925360.1 119718395 4596690 4412764..4413894 1 NC_008699.1 PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: rha:RHA1_ro08313 probable mandalate racemase; mandelate racemase/muconate lactonizing protein 4413894 4596690 Noca_4176 Nocardioides sp. JS614 mandelate racemase/muconate lactonizing protein YP_925360.1 4412764 D 196162 CDS YP_925361.1 119718396 4596691 4413912..4414988 1 NC_008699.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: nfa:nfa35140 putative dehydrogenase; alcohol dehydrogenase 4414988 4596691 Noca_4177 Nocardioides sp. JS614 alcohol dehydrogenase YP_925361.1 4413912 D 196162 CDS YP_925362.1 119718397 4596692 4414985..4416793 1 NC_008699.1 PFAM: glycoside hydrolase 15-related; KEGG: tfu:Tfu_1345 hypothetical protein; glycoside hydrolase 15-like protein 4416793 4596692 Noca_4178 Nocardioides sp. JS614 glycoside hydrolase 15-like protein YP_925362.1 4414985 D 196162 CDS YP_925363.1 119718398 4596693 4416790..4416993 1 NC_008699.1 hypothetical protein 4416993 4596693 Noca_4179 Nocardioides sp. JS614 hypothetical protein YP_925363.1 4416790 D 196162 CDS YP_925364.1 119718399 4596694 4417111..4418364 1 NC_008699.1 KEGG: blo:BL0495 narrowly conserved hypothetical protein; hypothetical protein 4418364 4596694 Noca_4180 Nocardioides sp. JS614 hypothetical protein YP_925364.1 4417111 D 196162 CDS YP_925365.1 119718400 4596695 4418403..4419383 1 NC_008699.1 TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: fra:Francci3_1307 GDP-mannose 4,6-dehydratase; GDP-mannose 4,6-dehydratase 4419383 4596695 Noca_4181 Nocardioides sp. JS614 GDP-mannose 4,6-dehydratase YP_925365.1 4418403 D 196162 CDS YP_925366.1 119718401 4596696 4419389..4420342 1 NC_008699.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: fal:FRAAL2056 GDP-D-mannose dehydratase, NAD(P)-binding (partial match); NAD-dependent epimerase/dehydratase 4420342 4596696 Noca_4182 Nocardioides sp. JS614 NAD-dependent epimerase/dehydratase YP_925366.1 4419389 D 196162 CDS YP_925367.1 119718402 4596697 complement(4420495..4421799) 1 NC_008699.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: mpa:MAP0443c hypothetical protein; HNH endonuclease 4421799 4596697 Noca_4183 Nocardioides sp. JS614 HNH endonuclease YP_925367.1 4420495 R 196162 CDS YP_925368.1 119718403 4596698 complement(4422049..4423881) 1 NC_008699.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KR; KEGG: fal:FRAAL5661 dTDP-glucose 4,6-dehydratase transmembrane protein putative capsular polysaccharide biosynthesis protein; polysaccharide biosynthesis protein CapD 4423881 4596698 Noca_4184 Nocardioides sp. JS614 polysaccharide biosynthesis protein CapD YP_925368.1 4422049 R 196162 CDS YP_925369.1 119718404 4596699 4424170..4425591 1 NC_008699.1 PFAM: lipopolysaccharide biosynthesis; KEGG: fal:FRAAL5660 putative tyrosine-protein kinase; lipopolysaccharide biosynthesis protein 4425591 4596699 Noca_4185 Nocardioides sp. JS614 lipopolysaccharide biosynthesis protein YP_925369.1 4424170 D 196162 CDS YP_925370.1 119718405 4596700 complement(4425779..4426168) 1 NC_008699.1 PFAM: mannose-6-phosphate isomerase, type II; Cupin 2, conserved barrel domain protein; KEGG: rpe:RPE_3497 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; mannose-6-phosphate isomerase 4426168 4596700 Noca_4186 Nocardioides sp. JS614 mannose-6-phosphate isomerase YP_925370.1 4425779 R 196162 CDS YP_925371.1 119718406 4596701 complement(4426280..4426573) 1 NC_008699.1 KEGG: mpa:MAP3969 hypothetical protein; hypothetical protein 4426573 4596701 Noca_4187 Nocardioides sp. JS614 hypothetical protein YP_925371.1 4426280 R 196162 CDS YP_925372.1 119718407 4596702 complement(4426848..4428206) 1 NC_008699.1 PFAM: aldehyde dehydrogenase; KEGG: rha:RHA1_ro01994 probable succinate-semialdehyde dehydrogenase (NAD(P)+); aldehyde dehydrogenase 4428206 4596702 Noca_4188 Nocardioides sp. JS614 aldehyde dehydrogenase YP_925372.1 4426848 R 196162 CDS YP_925373.1 119718408 4596703 complement(4428222..4429424) 1 NC_008699.1 KEGG: rha:RHA1_ro02904 possible fumarylacetoacetate hydrolase; putative fumarylacetoacetate hydrolase 4429424 4596703 Noca_4189 Nocardioides sp. JS614 putative fumarylacetoacetate hydrolase YP_925373.1 4428222 R 196162 CDS YP_925374.1 119718409 4596704 complement(4429421..4429882) 1 NC_008699.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mlo:mll8574 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 4429882 4596704 Noca_4190 Nocardioides sp. JS614 glyoxalase/bleomycin resistance protein/dioxygenase YP_925374.1 4429421 R 196162 CDS YP_925375.1 119718410 4596705 complement(4429879..4430322) 1 NC_008699.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: gbe:GbCGDNIH1_1383 blasticidin-S deaminase; zinc-binding CMP/dCMP deaminase 4430322 4596705 Noca_4191 Nocardioides sp. JS614 zinc-binding CMP/dCMP deaminase YP_925375.1 4429879 R 196162 CDS YP_925376.1 119718411 4596706 complement(4430330..4431250) 1 NC_008699.1 PFAM: inner-membrane translocator; KEGG: rxy:Rxyl_0158 inner-membrane translocator; inner-membrane translocator 4431250 4596706 Noca_4192 Nocardioides sp. JS614 inner-membrane translocator YP_925376.1 4430330 R 196162 CDS YP_925377.1 119718412 4596707 complement(4431237..4432364) 1 NC_008699.1 PFAM: inner-membrane translocator; KEGG: cya:CYA_1582 carbohydrate ABC transporter-2 (CUT2) family, permease protein; inner-membrane translocator 4432364 4596707 Noca_4193 Nocardioides sp. JS614 inner-membrane translocator YP_925377.1 4431237 R 196162 CDS YP_925378.1 119718413 4596708 complement(4432361..4433908) 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rxy:Rxyl_0156 ABC transporter related; ABC transporter-like protein 4433908 4596708 Noca_4194 Nocardioides sp. JS614 ABC transporter-like protein YP_925378.1 4432361 R 196162 CDS YP_925379.1 119718414 4596709 complement(4433905..4434903) 1 NC_008699.1 PFAM: basic membrane lipoprotein; KEGG: rxy:Rxyl_0155 basic membrane lipoprotein; basic membrane lipoprotein 4434903 4596709 Noca_4195 Nocardioides sp. JS614 basic membrane lipoprotein YP_925379.1 4433905 R 196162 CDS YP_925380.1 119718415 4596710 4435048..4436004 1 NC_008699.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: rha:RHA1_ro02903 phosphoglycerate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase 4436004 4596710 Noca_4196 Nocardioides sp. JS614 D-isomer specific 2-hydroxyacid dehydrogenase YP_925380.1 4435048 D 196162 CDS YP_925381.1 119718416 4596711 4436055..4436822 1 NC_008699.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: rha:RHA1_ro02909 transcriptional regulator, GntR family; GntR family transcriptional regulator 4436822 4596711 Noca_4197 Nocardioides sp. JS614 GntR family transcriptional regulator YP_925381.1 4436055 D 196162 CDS YP_925382.1 119718417 4596712 4436819..4437610 1 NC_008699.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: fal:FRAAL3120 2-deoxy-D-gluconate 3-dehydrogenase (2-keto-3-deoxygluconate oxidoreductase); short-chain dehydrogenase/reductase SDR 4437610 4596712 Noca_4198 Nocardioides sp. JS614 short-chain dehydrogenase/reductase SDR YP_925382.1 4436819 D 196162 CDS YP_925383.1 119718418 4596713 4437625..4439193 1 NC_008699.1 PFAM: aldehyde dehydrogenase; KEGG: rha:RHA1_ro03790 aldehyde dehydrogenase (NAD+); aldehyde dehydrogenase 4439193 4596713 Noca_4199 Nocardioides sp. JS614 aldehyde dehydrogenase YP_925383.1 4437625 D 196162 CDS YP_925384.1 119718419 4596714 complement(4439297..4439992) 1 NC_008699.1 KEGG: rha:RHA1_ro02104 hypothetical protein; hypothetical protein 4439992 4596714 Noca_4200 Nocardioides sp. JS614 hypothetical protein YP_925384.1 4439297 R 196162 CDS YP_925385.1 119718420 4596715 complement(4440010..4440396) 1 NC_008699.1 PFAM: helix-turn-helix domain protein; KEGG: fal:FRAAL0956 putative DNA-binding protein (partial match); helix-turn-helix domain-containing protein 4440396 4596715 Noca_4201 Nocardioides sp. JS614 helix-turn-helix domain-containing protein YP_925385.1 4440010 R 196162 CDS YP_925386.1 119718421 4596716 4440607..4441845 1 NC_008699.1 TIGRFAM: mannose-6-phosphate isomerase, class I; PFAM: mannose-6-phosphate isomerase, type I; KEGG: tfu:Tfu_0016 mannose-6-phosphate isomerase, type I; mannose-6-phosphate isomerase 4441845 4596716 Noca_4202 Nocardioides sp. JS614 mannose-6-phosphate isomerase YP_925386.1 4440607 D 196162 CDS YP_925387.1 119718422 4596717 complement(4441847..4442869) 1 NC_008699.1 TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: rha:RHA1_ro05444 GDP-mannose 4,6-dehydratase; GDP-mannose 4,6-dehydratase 4442869 4596717 Noca_4203 Nocardioides sp. JS614 GDP-mannose 4,6-dehydratase YP_925387.1 4441847 R 196162 CDS YP_925388.1 119718423 4596718 complement(4443092..4444066) 1 NC_008699.1 PFAM: L-asparaginase II; KEGG: sma:SAV4025 L-asparaginase II; L-asparaginase II 4444066 4596718 Noca_4204 Nocardioides sp. JS614 L-asparaginase II YP_925388.1 4443092 R 196162 CDS YP_925389.1 119718424 4596719 4444114..4446126 1 NC_008699.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; adenylylsulfate kinase; KEGG: tfu:Tfu_0425 adenylylsulfate kinase; adenylylsulfate kinase 4446126 4596719 Noca_4205 Nocardioides sp. JS614 adenylylsulfate kinase YP_925389.1 4444114 D 196162 CDS YP_925390.1 119718425 4596720 4446176..4447165 1 NC_008699.1 PFAM: protein of unknown function DUF81; KEGG: fal:FRAAL1625 membrane protein, putative (partial match); hypothetical protein 4447165 4596720 Noca_4206 Nocardioides sp. JS614 hypothetical protein YP_925390.1 4446176 D 196162 CDS YP_925391.1 119718426 4596721 4447270..4448184 1 NC_008699.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 4448184 4596721 Noca_4207 Nocardioides sp. JS614 sulfate adenylyltransferase subunit 2 YP_925391.1 4447270 D 196162 CDS YP_925392.1 119718427 4596722 4448184..4449482 1 NC_008699.1 KEGG: fal:FRAAL2109 ATP-sulfurylase, subunit 1 (ATP:sulfate adenylyltransferase); TIGRFAM: small GTP-binding protein; sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; sulfate adenylyltransferase subunit 1 4449482 4596722 Noca_4208 Nocardioides sp. JS614 sulfate adenylyltransferase subunit 1 YP_925392.1 4448184 D 196162 CDS YP_925393.1 119718428 4596723 4449613..4450209 1 NC_008699.1 KEGG: pac:PPA0134 putative acetyltransferase; putative acetyltransferase 4450209 4596723 Noca_4209 Nocardioides sp. JS614 putative acetyltransferase YP_925393.1 4449613 D 196162 CDS YP_925394.1 119718429 4596724 4450213..4451301 1 NC_008699.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pac:PPA0135 aspartate aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 4451301 4596724 Noca_4210 Nocardioides sp. JS614 DegT/DnrJ/EryC1/StrS aminotransferase YP_925394.1 4450213 D 196162 CDS YP_925395.1 119718430 4596725 4451303..4452316 1 NC_008699.1 PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: pac:PPA0136 NAD-dependent dehydrogenase; oxidoreductase domain-containing protein 4452316 4596725 Noca_4211 Nocardioides sp. JS614 oxidoreductase domain-containing protein YP_925395.1 4451303 D 196162 CDS YP_925396.1 119718431 4596726 4452313..4453614 1 NC_008699.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; 6-phosphogluconate dehydrogenase, NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: pac:PPA0145 putative UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase 4453614 4596726 Noca_4212 Nocardioides sp. JS614 UDP-glucose/GDP-mannose dehydrogenase YP_925396.1 4452313 D 196162 CDS YP_925397.1 119718432 4596727 4453812..4454843 1 NC_008699.1 KEGG: aba:Acid345_3309 membrane protein involved in the export of O-antigen and teichoic acid; hypothetical protein 4454843 4596727 Noca_4213 Nocardioides sp. JS614 hypothetical protein YP_925397.1 4453812 D 196162 CDS YP_925398.1 119718433 4596728 4454845..4456137 1 NC_008699.1 hypothetical protein 4456137 4596728 Noca_4214 Nocardioides sp. JS614 hypothetical protein YP_925398.1 4454845 D 196162 CDS YP_925399.1 119718434 4596729 4456134..4457357 1 NC_008699.1 PFAM: glycosyl transferase, group 1; KEGG: tte:TTE0660 predicted glycosyltransferase; group 1 glycosyl transferase 4457357 4596729 Noca_4215 Nocardioides sp. JS614 group 1 glycosyl transferase YP_925399.1 4456134 D 196162 CDS YP_925400.1 119718435 4596730 complement(4457350..4458183) 1 NC_008699.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: ter:Tery_2252 methyltransferase type 11; type 11 methyltransferase 4458183 4596730 Noca_4216 Nocardioides sp. JS614 type 11 methyltransferase YP_925400.1 4457350 R 196162 CDS YP_925401.1 119718436 4596731 complement(4458256..4459512) 1 NC_008699.1 PFAM: glycosyl transferase, group 1; KEGG: cvi:CV4119 probable glycosyltransferase; group 1 glycosyl transferase 4459512 4596731 Noca_4217 Nocardioides sp. JS614 group 1 glycosyl transferase YP_925401.1 4458256 R 196162 CDS YP_925402.1 119718437 4596732 complement(4459522..4460307) 1 NC_008699.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mmc:Mmcs_1869 methyltransferase type 11; type 11 methyltransferase 4460307 4596732 Noca_4218 Nocardioides sp. JS614 type 11 methyltransferase YP_925402.1 4459522 R 196162 CDS YP_925403.1 119718438 4596733 complement(4460304..4460891) 1 NC_008699.1 PFAM: sugar transferase; KEGG: bth:BT0611 glycosyltransferase; sugar transferase 4460891 4596733 Noca_4219 Nocardioides sp. JS614 sugar transferase YP_925403.1 4460304 R 196162 CDS YP_925404.1 119718439 4596734 complement(4460939..4462048) 1 NC_008699.1 PFAM: aminotransferase, class V; DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: gka:GK3168 pleiotropic regulatory protein; DegT/DnrJ/EryC1/StrS aminotransferase 4462048 4596734 Noca_4220 Nocardioides sp. JS614 DegT/DnrJ/EryC1/StrS aminotransferase YP_925404.1 4460939 R 196162 CDS YP_925405.1 119718440 4596735 complement(4462048..4462971) 1 NC_008699.1 PFAM: Transketolase, central region; Transketolase domain protein; KEGG: lmf:LMOf2365_1054 transketolase, C-terminal subunit, putative; transketolase subunit B 4462971 4596735 Noca_4221 Nocardioides sp. JS614 transketolase subunit B YP_925405.1 4462048 R 196162 CDS YP_925406.1 119718441 4596736 complement(4462968..4463780) 1 NC_008699.1 PFAM: Transketolase domain protein; KEGG: tma:TM0954 transketolase, N-terminal subunit; transketolase 4463780 4596736 Noca_4222 Nocardioides sp. JS614 transketolase YP_925406.1 4462968 R 196162 CDS YP_925407.1 119718442 4596737 complement(4463786..4464607) 1 NC_008699.1 KEGG: sma:SAV951 dTDP-6-deoxy-L-hexose 3-O-methyltransferase; dTDP-6-deoxy-L-hexose 3-O-methyltransferase 4464607 4596737 Noca_4223 Nocardioides sp. JS614 dTDP-6-deoxy-L-hexose 3-O-methyltransferase YP_925407.1 4463786 R 196162 CDS YP_925408.1 119718443 4596738 complement(4464696..4466396) 1 NC_008699.1 KEGG: mmc:Mmcs_0947 hypothetical protein; hypothetical protein 4466396 4596738 Noca_4224 Nocardioides sp. JS614 hypothetical protein YP_925408.1 4464696 R 196162 CDS YP_925409.1 119718444 4596739 complement(4466500..4466913) 1 NC_008699.1 hypothetical protein 4466913 4596739 Noca_4225 Nocardioides sp. JS614 hypothetical protein YP_925409.1 4466500 R 196162 CDS YP_925410.1 119718445 4596740 complement(4467029..4467940) 1 NC_008699.1 PFAM: protein of unknown function DUF849; KEGG: sth:STH64 hypothetical protein; 3-keto-5-aminohexanoate cleavage protein 4467940 4596740 Noca_4226 Nocardioides sp. JS614 3-keto-5-aminohexanoate cleavage protein YP_925410.1 4467029 R 196162 CDS YP_925411.1 119718446 4596741 4468524..4468940 1 NC_008699.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 4468940 4596741 Noca_4227 Nocardioides sp. JS614 D-tyrosyl-tRNA(Tyr) deacylase YP_925411.1 4468524 D 196162 CDS YP_925412.1 119718447 4596742 4469118..4471079 1 NC_008699.1 KEGG: bld:BLi00800 hypothetical protein; hypothetical protein 4471079 4596742 Noca_4228 Nocardioides sp. JS614 hypothetical protein YP_925412.1 4469118 D 196162 CDS YP_925413.1 119718448 4596743 complement(4471245..4471541) 1 NC_008699.1 PFAM: protein of unknown function DUF1416; KEGG: fra:Francci3_0450 protein of unknown function DUF1416; hypothetical protein 4471541 4596743 Noca_4229 Nocardioides sp. JS614 hypothetical protein YP_925413.1 4471245 R 196162 CDS YP_925414.1 119718449 4596744 complement(4471541..4472389) 1 NC_008699.1 PFAM: Rhodanese domain protein; KEGG: mmc:Mmcs_4529 thiosulfate sulfurtransferase; rhodanese domain-containing protein 4472389 4596744 Noca_4230 Nocardioides sp. JS614 rhodanese domain-containing protein YP_925414.1 4471541 R 196162 CDS YP_925415.1 119718450 4596745 complement(4472445..4472930) 1 NC_008699.1 KEGG: sma:SAV1484 hypothetical protein; hypothetical protein 4472930 4596745 Noca_4231 Nocardioides sp. JS614 hypothetical protein YP_925415.1 4472445 R 196162 CDS YP_925416.1 119718451 4596746 complement(4473253..4473765) 1 NC_008699.1 KEGG: fal:FRAAL0941 putative thioredoxin; putative thioredoxin 4473765 4596746 Noca_4232 Nocardioides sp. JS614 putative thioredoxin YP_925416.1 4473253 R 196162 CDS YP_925417.1 119718452 4596747 4473825..4474253 1 NC_008699.1 KEGG: lxx:Lxx09000 hypothetical protein; hypothetical protein 4474253 4596747 Noca_4233 Nocardioides sp. JS614 hypothetical protein YP_925417.1 4473825 D 196162 CDS YP_925418.1 119718453 4596748 complement(4474230..4474520) 1 NC_008699.1 PFAM: regulatory protein, MerR; KEGG: fal:FRAAL4032 putative chaperone locus transcriptional regulator, HspR; regulatory protein MerR 4474520 4596748 Noca_4234 Nocardioides sp. JS614 regulatory protein MerR YP_925418.1 4474230 R 196162 CDS YP_925419.1 119718454 4596749 4474775..4475206 1 NC_008699.1 PFAM: heat shock protein Hsp20; KEGG: rha:RHA1_ro08348 heat shock protein (18 KDa antigen-like protein); heat shock protein Hsp20 4475206 4596749 Noca_4235 Nocardioides sp. JS614 heat shock protein Hsp20 YP_925419.1 4474775 D 196162 CDS YP_925420.1 119718455 4596750 complement(4475262..4476080) 1 NC_008699.1 KEGG: ddi:DDB0204485 hypothetical protein; hypothetical protein 4476080 4596750 Noca_4236 Nocardioides sp. JS614 hypothetical protein YP_925420.1 4475262 R 196162 CDS YP_925421.1 119718456 4596751 complement(4476073..4476630) 1 NC_008699.1 TIGRFAM: peptidase S26B, signal peptidase; PFAM: peptidase S24, S26A and S26B; KEGG: tfu:Tfu_2961 peptidase S26B, eukaryotic signal peptidase; peptidase S26B, signal peptidase 4476630 4596751 Noca_4237 Nocardioides sp. JS614 peptidase S26B, signal peptidase YP_925421.1 4476073 R 196162 CDS YP_925422.1 119718457 4596752 complement(4476678..4477190) 1 NC_008699.1 KEGG: cef:CE1188 hypothetical protein; hypothetical protein 4477190 4596752 Noca_4238 Nocardioides sp. JS614 hypothetical protein YP_925422.1 4476678 R 196162 CDS YP_925423.1 119718458 4596753 complement(4477395..4477667) 1 NC_008699.1 PFAM: thiamineS protein; KEGG: fra:Francci3_0445 thiamine S; sulfur transfer protein ThiS 4477667 4596753 Noca_4239 Nocardioides sp. JS614 sulfur transfer protein ThiS YP_925423.1 4477395 R 196162 CDS YP_925424.1 119718459 4596754 4477761..4478534 1 NC_008699.1 PFAM: transcriptional regulator domain protein; KEGG: sco:SCO4159 transcriptional regulatory protein; transcriptional regulator domain-containing protein 4478534 4596754 Noca_4240 Nocardioides sp. JS614 transcriptional regulator domain-containing protein YP_925424.1 4477761 D 196162 CDS YP_925425.1 119718460 4596755 complement(4478508..4478906) 1 NC_008699.1 hypothetical protein 4478906 4596755 Noca_4241 Nocardioides sp. JS614 hypothetical protein YP_925425.1 4478508 R 196162 CDS YP_925426.1 119718461 4596756 complement(4478909..4481437) 1 NC_008699.1 PFAM: MMPL domain protein; KEGG: fal:FRAAL1424 putative integral membrane export protein; MMPL domain-containing protein 4481437 4596756 Noca_4242 Nocardioides sp. JS614 MMPL domain-containing protein YP_925426.1 4478909 R 196162 CDS YP_925427.1 119718462 4596757 complement(4481437..4482297) 1 NC_008699.1 KEGG: sma:SAV1712 hypothetical protein; hypothetical protein 4482297 4596757 Noca_4243 Nocardioides sp. JS614 hypothetical protein YP_925427.1 4481437 R 196162 CDS YP_925428.1 119718463 4596758 4482475..4483113 1 NC_008699.1 PFAM: regulatory protein, TetR; KEGG: fra:Francci3_1551 transcriptional regulator, TetR family; TetR family transcriptional regulator 4483113 4596758 Noca_4244 Nocardioides sp. JS614 TetR family transcriptional regulator YP_925428.1 4482475 D 196162 CDS YP_925429.1 119718464 4596759 complement(4483138..4483803) 1 NC_008699.1 PFAM: regulatory protein, TetR; KEGG: cvi:CV1837 probable transcriptional regulator, TetR family; regulatory protein TetR 4483803 4596759 Noca_4245 Nocardioides sp. JS614 regulatory protein TetR YP_925429.1 4483138 R 196162 CDS YP_925430.1 119718465 4596760 complement(4483859..4484809) 1 NC_008699.1 KEGG: rpc:RPC_1203 dipeptidyl aminopeptidases/acylaminoacyl-peptidases-like; dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein 4484809 4596760 Noca_4246 Nocardioides sp. JS614 dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein YP_925430.1 4483859 R 196162 CDS YP_925431.1 119718466 4596761 complement(4485163..4487343) 1 NC_008699.1 PFAM: MMPL domain protein; KEGG: rha:RHA1_ro04933 membrane efflux protein; MMPL domain-containing protein 4487343 4596761 Noca_4247 Nocardioides sp. JS614 MMPL domain-containing protein YP_925431.1 4485163 R 196162 CDS YP_925432.1 119718467 4596762 4487477..4488364 1 NC_008699.1 PFAM: GCN5-related N-acetyltransferase; FR47 domain protein; KEGG: nfa:nfa5990 putative acetyltransferase; N-acetyltransferase GCN5 4488364 4596762 Noca_4248 Nocardioides sp. JS614 N-acetyltransferase GCN5 YP_925432.1 4487477 D 196162 CDS YP_925433.1 119718468 4596763 complement(4488382..4488648) 1 NC_008699.1 hypothetical protein 4488648 4596763 Noca_4249 Nocardioides sp. JS614 hypothetical protein YP_925433.1 4488382 R 196162 CDS YP_925434.1 119718469 4596764 complement(4488891..4489865) 1 NC_008699.1 PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: sma:SAV4028 hypothetical protein; glycine cleavage T protein (aminomethyl transferase) 4489865 4596764 Noca_4250 Nocardioides sp. JS614 glycine cleavage T protein (aminomethyl transferase) YP_925434.1 4488891 R 196162 CDS YP_925435.1 119718470 4596765 complement(4489862..4490281) 1 NC_008699.1 PFAM: ferric-uptake regulator; Penicillinase repressor; KEGG: sma:SAV4029 iron uptake regulatory protein; FUR family nickel uptake regulator 4490281 4596765 Noca_4251 Nocardioides sp. JS614 FUR family nickel uptake regulator YP_925435.1 4489862 R 196162 CDS YP_925436.1 119718471 4596766 complement(4490329..4490823) 1 NC_008699.1 KEGG: pac:PPA0347 hypothetical protein; hypothetical protein 4490823 4596766 Noca_4252 Nocardioides sp. JS614 hypothetical protein YP_925436.1 4490329 R 196162 CDS YP_925437.1 119718472 4596767 4490847..4491203 1 NC_008699.1 KEGG: fra:Francci3_0454 conserved hypothetical protein; hypothetical protein 4491203 4596767 Noca_4253 Nocardioides sp. JS614 hypothetical protein YP_925437.1 4490847 D 196162 CDS YP_925438.1 119718473 4596768 4491249..4493720 1 NC_008699.1 KEGG: tcr:503617.20 kinetoplast DNA-associated protein Pfam: DUF1682 HC2 TolA PROSITE: ALA_RICH GLU_RICH; hypothetical protein 4493720 4596768 Noca_4254 Nocardioides sp. JS614 hypothetical protein YP_925438.1 4491249 D 196162 CDS YP_925439.1 119718474 4596769 4494242..4495204 1 NC_008699.1 KEGG: rha:RHA1_ro04851 hypothetical protein; hypothetical protein 4495204 4596769 Noca_4255 Nocardioides sp. JS614 hypothetical protein YP_925439.1 4494242 D 196162 CDS YP_925440.1 119718475 4596770 complement(4495266..4496309) 1 NC_008699.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: mpa:MAP3006c LipN; alpha/beta hydrolase domain-containing protein 4496309 4596770 Noca_4256 Nocardioides sp. JS614 alpha/beta hydrolase domain-containing protein YP_925440.1 4495266 R 196162 CDS YP_925441.1 119718476 4596771 4496425..4498515 1 NC_008699.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 4498515 4596771 Noca_4257 Nocardioides sp. JS614 polyphosphate kinase YP_925441.1 4496425 D 196162 CDS YP_925442.1 119718477 4596772 4498659..4499276 1 NC_008699.1 PFAM: protein of unknown function DUF47; KEGG: sco:SCO4137 hypothetical protein; hypothetical protein 4499276 4596772 Noca_4258 Nocardioides sp. JS614 hypothetical protein YP_925442.1 4498659 D 196162 CDS YP_925443.1 119718478 4596773 4499278..4500276 1 NC_008699.1 PFAM: phosphate transporter; KEGG: sma:SAV4076 putative low-affinity inorganic phosphate transporter; phosphate transporter 4500276 4596773 Noca_4259 Nocardioides sp. JS614 phosphate transporter YP_925443.1 4499278 D 196162 CDS YP_925444.1 119718479 4596774 complement(4500451..4501230) 1 NC_008699.1 KEGG: tfu:Tfu_2743 phosphate transport system permease protein 1; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; phosphate ABC transporter ATPase 4501230 4596774 Noca_4260 Nocardioides sp. JS614 phosphate ABC transporter ATPase YP_925444.1 4500451 R 196162 CDS YP_925445.1 119718480 4596775 complement(4501268..4502344) 1 NC_008699.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lxx:Lxx18440 ABC transporter, permease protein; phosphate ABC transporter permease 4502344 4596775 Noca_4261 Nocardioides sp. JS614 phosphate ABC transporter permease YP_925445.1 4501268 R 196162 CDS YP_925446.1 119718481 4596776 complement(4502350..4503288) 1 NC_008699.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lxx:Lxx18430 ABC transporter, permease protein; phosphate ABC transporter permease 4503288 4596776 Noca_4262 Nocardioides sp. JS614 phosphate ABC transporter permease YP_925446.1 4502350 R 196162 CDS YP_925447.1 119718482 4596777 complement(4503383..4504495) 1 NC_008699.1 TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: lxx:Lxx18420 phosphate porter; phosphate ABC transporter, periplasmic phosphate-binding protein 4504495 4596777 Noca_4263 Nocardioides sp. JS614 phosphate ABC transporter, periplasmic phosphate-binding protein YP_925447.1 4503383 R 196162 CDS YP_925448.1 119718483 4596778 complement(4504666..4505526) 1 NC_008699.1 PFAM: NUDIX hydrolase; Phosphoglycerate mutase; KEGG: pac:PPA0342 hypothetical protein; NUDIX hydrolase 4505526 4596778 Noca_4264 Nocardioides sp. JS614 NUDIX hydrolase YP_925448.1 4504666 R 196162 CDS YP_925449.1 119718484 4596779 4505569..4506642 1 NC_008699.1 hypothetical protein 4506642 4596779 Noca_4265 Nocardioides sp. JS614 hypothetical protein YP_925449.1 4505569 D 196162 CDS YP_925450.1 119718485 4596780 4506768..4507820 1 NC_008699.1 KEGG: mmc:Mmcs_0096 hypothetical protein; hypothetical protein 4507820 4596780 Noca_4266 Nocardioides sp. JS614 hypothetical protein YP_925450.1 4506768 D 196162 CDS YP_925451.1 119718486 4596781 complement(4507906..4508238) 1 NC_008699.1 PFAM: protein of unknown function DUF156; KEGG: rha:RHA1_ro03538 hypothetical protein; hypothetical protein 4508238 4596781 Noca_4267 Nocardioides sp. JS614 hypothetical protein YP_925451.1 4507906 R 196162 CDS YP_925452.1 119718487 4596782 complement(4508295..4508480) 1 NC_008699.1 hypothetical protein 4508480 4596782 Noca_4268 Nocardioides sp. JS614 hypothetical protein YP_925452.1 4508295 R 196162 CDS YP_925453.1 119718488 4596783 complement(4508671..4508874) 1 NC_008699.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: sco:SCO4505 cold shock protein; cold-shock DNA-binding protein family protein 4508874 4596783 Noca_4269 Nocardioides sp. JS614 cold-shock DNA-binding protein family protein YP_925453.1 4508671 R 196162 CDS YP_925454.1 119718489 4596784 complement(4509471..4510586) 1 NC_008699.1 KEGG: rha:RHA1_ro05296 cyanuric acid amidohydrolase; barbiturase 4510586 4596784 Noca_4270 Nocardioides sp. JS614 barbiturase YP_925454.1 4509471 R 196162 CDS YP_925455.1 119718490 4596785 complement(4510583..4513066) 1 NC_008699.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: ctc:CTC02477 putative carbon-monoxide dehydrogenase, large subunit; xanthine dehydrogenase, molybdenum binding subunit apoprotein 4513066 4596785 Noca_4271 Nocardioides sp. JS614 xanthine dehydrogenase, molybdenum binding subunit apoprotein YP_925455.1 4510583 R 196162 CDS YP_925456.1 119718491 4596786 complement(4513059..4513562) 1 NC_008699.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: chy:CHY_0691 2Fe-2S iron-sulfur cluster binding domain; 2Fe-2S iron-sulfur cluster binding domain-containing protein 4513562 4596786 Noca_4272 Nocardioides sp. JS614 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_925456.1 4513059 R 196162 CDS YP_925457.1 119718492 4596787 complement(4513562..4514377) 1 NC_008699.1 PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: sme:SMb20130 putative dehydrogenase protein; molybdopterin dehydrogenase 4514377 4596787 Noca_4273 Nocardioides sp. JS614 molybdopterin dehydrogenase YP_925457.1 4513562 R 196162 CDS YP_925458.1 119718493 4596789 complement(4514838..4516550) 1 NC_008699.1 KEGG: rha:RHA1_ro04368 hypothetical protein; hypothetical protein 4516550 4596789 Noca_4274 Nocardioides sp. JS614 hypothetical protein YP_925458.1 4514838 R 196162 CDS YP_925459.1 119718494 4596790 4516778..4518190 1 NC_008699.1 PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro04369 multidrug transport protein, MFS superfamily; major facilitator transporter 4518190 4596790 Noca_4275 Nocardioides sp. JS614 major facilitator transporter YP_925459.1 4516778 D 196162 CDS YP_925460.1 119718495 4596791 complement(4518204..4519862) 1 NC_008699.1 KEGG: rha:RHA1_ro04370 hypothetical protein; CdaR family transcriptional regulator 4519862 4596791 Noca_4276 Nocardioides sp. JS614 CdaR family transcriptional regulator YP_925460.1 4518204 R 196162 CDS YP_925461.1 119718496 4596792 4519991..4520443 1 NC_008699.1 PFAM: protein of unknown function DUF336; KEGG: rha:RHA1_ro04371 possible GlcG protein; hypothetical protein 4520443 4596792 Noca_4277 Nocardioides sp. JS614 hypothetical protein YP_925461.1 4519991 D 196162 CDS YP_925462.1 119718497 4596793 complement(4520452..4520949) 1 NC_008699.1 PFAM: Endoribonuclease L-PSP; KEGG: rha:RHA1_ro04378 hypothetical protein; endoribonuclease L-PSP 4520949 4596793 Noca_4278 Nocardioides sp. JS614 endoribonuclease L-PSP YP_925462.1 4520452 R 196162 CDS YP_925463.1 119718498 4596794 complement(4521053..4522612) 1 NC_008699.1 PFAM: gamma-glutamyltranspeptidase; KEGG: rha:RHA1_ro04377 probable gamma-glutamyltransferase; gamma-glutamyltransferase 4522612 4596794 Noca_4279 Nocardioides sp. JS614 gamma-glutamyltransferase YP_925463.1 4521053 R 196162 CDS YP_925464.1 119718499 4596795 complement(4522672..4523073) 1 NC_008699.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: rha:RHA1_ro04376 probable aromatic ring dioxygenase; Rieske (2Fe-2S) domain-containing protein 4523073 4596795 Noca_4280 Nocardioides sp. JS614 Rieske (2Fe-2S) domain-containing protein YP_925464.1 4522672 R 196162 CDS YP_925465.1 119718500 4596796 complement(4523084..4524529) 1 NC_008699.1 PFAM: aldehyde dehydrogenase; KEGG: rha:RHA1_ro04375 aldehyde dehydrogenase (NAD+); aldehyde dehydrogenase 4524529 4596796 Noca_4281 Nocardioides sp. JS614 aldehyde dehydrogenase YP_925465.1 4523084 R 196162 CDS YP_925466.1 119718501 4596797 complement(4524522..4525733) 1 NC_008699.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rha:RHA1_ro04374 reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 4525733 4596797 Noca_4282 Nocardioides sp. JS614 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_925466.1 4524522 R 196162 CDS YP_925467.1 119718502 4596798 complement(4525730..4526056) 1 NC_008699.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: rha:RHA1_ro04373 probable dioxygenase ferredoxin component; Rieske (2Fe-2S) domain-containing protein 4526056 4596798 Noca_4283 Nocardioides sp. JS614 Rieske (2Fe-2S) domain-containing protein YP_925467.1 4525730 R 196162 CDS YP_925468.1 119718503 4596799 complement(4526187..4526951) 1 NC_008699.1 KEGG: rha:RHA1_ro04372 possible coenzyme PQQ synthesis protein; putative coenzyme PQQ synthesis protein 4526951 4596799 Noca_4284 Nocardioides sp. JS614 putative coenzyme PQQ synthesis protein YP_925468.1 4526187 R 196162 CDS YP_925469.1 119718504 4596800 4527024..4527893 1 NC_008699.1 PFAM: protein of unknown function DUF1275; KEGG: bli:BL00156 conserved membrane protein YoaK; hypothetical protein 4527893 4596800 Noca_4285 Nocardioides sp. JS614 hypothetical protein YP_925469.1 4527024 D 196162 CDS YP_925470.1 119718505 4596801 4528136..4528918 1 NC_008699.1 hypothetical protein 4528918 4596801 Noca_4286 Nocardioides sp. JS614 hypothetical protein YP_925470.1 4528136 D 196162 CDS YP_925471.1 119718506 4596802 complement(4528866..4529483) 1 NC_008699.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cef:CE0548 hypothetical protein; N-acetyltransferase GCN5 4529483 4596802 Noca_4287 Nocardioides sp. JS614 N-acetyltransferase GCN5 YP_925471.1 4528866 R 196162 CDS YP_925472.1 119718507 4596803 4529525..4530214 1 NC_008699.1 PFAM: thioesterase superfamily protein; KEGG: mmc:Mmcs_2763 thioesterase superfamily; thioesterase superfamily protein 4530214 4596803 Noca_4288 Nocardioides sp. JS614 thioesterase superfamily protein YP_925472.1 4529525 D 196162 CDS YP_925473.1 119718508 4596804 complement(4530345..4531850) 1 NC_008699.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: fal:FRAAL1622 NADH dehydrogenase; NADH dehydrogenase 4531850 4596804 Noca_4289 Nocardioides sp. JS614 NADH dehydrogenase YP_925473.1 4530345 R 196162 CDS YP_925474.1 119718509 4596805 4532116..4533063 1 NC_008699.1 PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: sco:SCO0542 hypothetical regulatory protein; ATPase domain-containing protein 4533063 4596805 Noca_4290 Nocardioides sp. JS614 ATPase domain-containing protein YP_925474.1 4532116 D 196162 CDS YP_925475.1 119718510 4596806 complement(4533106..4533459) 1 NC_008699.1 PFAM: protein of unknown function DUF1025; KEGG: mpa:MAP0195c hypothetical protein; hypothetical protein 4533459 4596806 Noca_4291 Nocardioides sp. JS614 hypothetical protein YP_925475.1 4533106 R 196162 CDS YP_925476.1 119718511 4596810 complement(4534250..4535419) 1 NC_008699.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rha:RHA1_ro02304 probable glutaryl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 4535419 4596810 Noca_4292 Nocardioides sp. JS614 acyl-CoA dehydrogenase domain-containing protein YP_925476.1 4534250 R 196162 CDS YP_925477.1 119718512 4596811 complement(4535431..4536582) 1 NC_008699.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rha:RHA1_ro02631 possible butyryl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 4536582 4596811 Noca_4293 Nocardioides sp. JS614 acyl-CoA dehydrogenase domain-containing protein YP_925477.1 4535431 R 196162 CDS YP_925478.1 119718513 4596812 complement(4536585..4537448) 1 NC_008699.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: cef:CE0323 putative 3-hydroxybutyryl-CoA dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase 4537448 4596812 Noca_4294 Nocardioides sp. JS614 3-hydroxyacyl-CoA dehydrogenase YP_925478.1 4536585 R 196162 CDS YP_925479.1 119718514 4596813 complement(4537448..4538230) 1 NC_008699.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: cef:CE2776 putative 3-hydroxybutyryl-CoA dehydratase; short chain enoyl-CoA hydratase 4538230 4596813 Noca_4295 Nocardioides sp. JS614 short chain enoyl-CoA hydratase YP_925479.1 4537448 R 196162 CDS YP_925480.1 119718515 4596814 complement(4538227..4539846) 1 NC_008699.1 AliA; in Rhodopseudomonas palustris, this enzyme was found to act on 3-chlorobenzoate and allows the organism to grow on this substrate; cyclohexanecarboxylate-CoA ligase 4539846 4596814 Noca_4296 Nocardioides sp. JS614 cyclohexanecarboxylate-CoA ligase YP_925480.1 4538227 R 196162 CDS YP_925481.1 119718516 4596815 complement(4539863..4540603) 1 NC_008699.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: cef:CE2778 putative 2-hydroxycyclohexanecarboxyl-CoA dehyrogenase; short-chain dehydrogenase/reductase SDR 4540603 4596815 Noca_4297 Nocardioides sp. JS614 short-chain dehydrogenase/reductase SDR YP_925481.1 4539863 R 196162 CDS YP_925482.1 119718517 4596816 complement(4540672..4541817) 1 NC_008699.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: eba:ebA1959 cyclohexanecarboxyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 4541817 4596816 Noca_4298 Nocardioides sp. JS614 acyl-CoA dehydrogenase domain-containing protein YP_925482.1 4540672 R 196162 CDS YP_925483.1 119718518 4596817 complement(4541839..4542636) 1 NC_008699.1 TIGRFAM: naphthoate synthase; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rha:RHA1_ro02630 probable naphthoate synthase; 1,4-dihydroxy-2-naphthoate synthase 4542636 4596817 Noca_4299 Nocardioides sp. JS614 1,4-dihydroxy-2-naphthoate synthase YP_925483.1 4541839 R 196162 CDS YP_925484.1 119718519 4596818 4542782..4543459 1 NC_008699.1 PFAM: regulatory protein, TetR; KEGG: rha:RHA1_ro02626 transcriptional regulator; transcriptional regulator 4543459 4596818 Noca_4300 Nocardioides sp. JS614 transcriptional regulator YP_925484.1 4542782 D 196162 CDS YP_925485.1 119718520 4596819 complement(4543494..4543769) 1 NC_008699.1 hypothetical protein 4543769 4596819 Noca_4301 Nocardioides sp. JS614 hypothetical protein YP_925485.1 4543494 R 196162 CDS YP_925486.1 119718521 4596820 complement(4543857..4544363) 1 NC_008699.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: sso:SSO1764 hypothetical protein; hemerythrin HHE cation binding domain-containing protein 4544363 4596820 Noca_4302 Nocardioides sp. JS614 hemerythrin HHE cation binding domain-containing protein YP_925486.1 4543857 R 196162 CDS YP_925487.1 119718522 4596821 complement(4544376..4544720) 1 NC_008699.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mpa:MAP2726c FdxA; 4Fe-4S ferredoxin 4544720 4596821 Noca_4303 Nocardioides sp. JS614 4Fe-4S ferredoxin YP_925487.1 4544376 R 196162 CDS YP_925488.1 119718523 4596822 4544811..4545500 1 NC_008699.1 KEGG: bba:Bd1520 hypothetical protein; hypothetical protein 4545500 4596822 Noca_4304 Nocardioides sp. JS614 hypothetical protein YP_925488.1 4544811 D 196162 CDS YP_925489.1 119718524 4596823 4545490..4546275 1 NC_008699.1 KEGG: rha:RHA1_ro08261 possible transcriptional regulator, MarR family; transcriptional regulator 4546275 4596823 Noca_4305 Nocardioides sp. JS614 transcriptional regulator YP_925489.1 4545490 D 196162 CDS YP_925490.1 119718525 4596824 complement(4546409..4547017) 1 NC_008699.1 TIGRFAM: serine O-acetyltransferase; KEGG: pfo:Pfl_4614 serine O-acetyltransferase; serine O-acetyltransferase 4547017 4596824 Noca_4306 Nocardioides sp. JS614 serine O-acetyltransferase YP_925490.1 4546409 R 196162 CDS YP_925491.1 119718526 4596825 complement(4547020..4547949) 1 NC_008699.1 TIGRFAM: cysteine synthases; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: mpa:MAP2123 cysteine synthase; cysteine synthase 4547949 4596825 Noca_4307 Nocardioides sp. JS614 cysteine synthase YP_925491.1 4547020 R 196162 CDS YP_925492.1 119718527 4596826 complement(4548592..4548975) 1 NC_008699.1 hypothetical protein 4548975 4596826 Noca_4308 Nocardioides sp. JS614 hypothetical protein YP_925492.1 4548592 R 196162 CDS YP_925493.1 119718528 4596827 4549087..4552860 1 NC_008699.1 KEGG: mmc:Mmcs_3642 PE-PGRS family protein; hypothetical protein 4552860 4596827 Noca_4309 Nocardioides sp. JS614 hypothetical protein YP_925493.1 4549087 D 196162 CDS YP_925494.1 119718529 4596828 complement(4553045..4555807) 1 NC_008699.1 KEGG: cps:CPS_4816 hypothetical protein; hypothetical protein 4555807 4596828 Noca_4310 Nocardioides sp. JS614 hypothetical protein YP_925494.1 4553045 R 196162 CDS YP_925495.1 119718530 4596829 4555839..4559111 1 NC_008699.1 KEGG: cya:CYA_2836 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase 4559111 4596829 Noca_4311 Nocardioides sp. JS614 PAS/PAC sensor hybrid histidine kinase YP_925495.1 4555839 D 196162 CDS YP_925496.1 119718531 4596830 4559113..4560351 1 NC_008699.1 hypothetical protein 4560351 4596830 Noca_4312 Nocardioides sp. JS614 hypothetical protein YP_925496.1 4559113 D 196162 CDS YP_925497.1 119718532 4596831 4560433..4561524 1 NC_008699.1 PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; KEGG: sma:SAV4132 putative valine dehydrogenase (NADP+); VanW protein 4561524 4596831 Noca_4313 Nocardioides sp. JS614 VanW protein YP_925497.1 4560433 D 196162 CDS YP_925498.1 119718533 4596832 complement(4561734..4561922) 1 NC_008699.1 KEGG: mbo:Mb0833c hypothetical protein; hypothetical protein 4561922 4596832 Noca_4314 Nocardioides sp. JS614 hypothetical protein YP_925498.1 4561734 R 196162 CDS YP_925499.1 119718534 4596833 complement(4562133..4563221) 1 NC_008699.1 KEGG: sco:SCO4087 phosphoribosylformylglycinamidine cyclo-ligase; TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; phosphoribosylformylglycinamidine cyclo-ligase 4563221 4596833 Noca_4315 Nocardioides sp. JS614 phosphoribosylformylglycinamidine cyclo-ligase YP_925499.1 4562133 R 196162 CDS YP_925500.1 119718535 4596834 complement(4563229..4564773) 1 NC_008699.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 4564773 4596834 Noca_4316 Nocardioides sp. JS614 amidophosphoribosyltransferase YP_925500.1 4563229 R 196162 CDS YP_925501.1 119718536 4596835 4564918..4566720 1 NC_008699.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: GAF domain protein; KEGG: sth:STH843 two-component sensor histidine kinase; ATPase domain-containing protein 4566720 4596835 Noca_4317 Nocardioides sp. JS614 ATPase domain-containing protein YP_925501.1 4564918 D 196162 CDS YP_925502.1 119718537 4596836 4566808..4568589 1 NC_008699.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: ava:Ava_2239 adenylate/guanylate cyclase; ATPase domain-containing protein 4568589 4596836 Noca_4318 Nocardioides sp. JS614 ATPase domain-containing protein YP_925502.1 4566808 D 196162 CDS YP_925503.1 119718538 4596837 complement(4568701..4570038) 1 NC_008699.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: mmc:Mmcs_3645 peptidase M20; hypothetical protein 4570038 4596837 Noca_4319 Nocardioides sp. JS614 hypothetical protein YP_925503.1 4568701 R 196162 CDS YP_925504.1 119718539 4596838 complement(4570118..4570477) 1 NC_008699.1 KEGG: tfu:Tfu_2746 hypothetical protein; hypothetical protein 4570477 4596838 Noca_4320 Nocardioides sp. JS614 hypothetical protein YP_925504.1 4570118 R 196162 CDS YP_925505.1 119718540 4596839 complement(4570477..4571079) 1 NC_008699.1 PFAM: regulatory protein, ArsR; KEGG: sma:SAV5143 ArsR-family transcriptional regulator; ArsR family transcriptional regulator 4571079 4596839 Noca_4321 Nocardioides sp. JS614 ArsR family transcriptional regulator YP_925505.1 4570477 R 196162 CDS YP_925506.1 119718541 4596840 4571149..4572405 1 NC_008699.1 PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV3640 multidrug resistance protein; major facilitator transporter 4572405 4596840 Noca_4322 Nocardioides sp. JS614 major facilitator transporter YP_925506.1 4571149 D 196162 CDS YP_925507.1 119718542 4596841 complement(4572481..4573464) 1 NC_008699.1 PFAM: protein of unknown function UPF0074; Helix-turn-helix, type 11 domain protein; KEGG: fal:FRAAL3900 putative DeoR-family transcriptional regulator; helix-turn-helix, type 11 domain-containing protein 4573464 4596841 Noca_4323 Nocardioides sp. JS614 helix-turn-helix, type 11 domain-containing protein YP_925507.1 4572481 R 196162 CDS YP_925508.1 119718543 4596842 4573506..4573760 1 NC_008699.1 hypothetical protein 4573760 4596842 Noca_4324 Nocardioides sp. JS614 hypothetical protein YP_925508.1 4573506 D 196162 CDS YP_925509.1 119718544 4596843 complement(4573771..4574610) 1 NC_008699.1 KEGG: mxa:MXAN_0913 hypothetical protein; hypothetical protein 4574610 4596843 Noca_4325 Nocardioides sp. JS614 hypothetical protein YP_925509.1 4573771 R 196162 CDS YP_925510.1 119718545 4596844 complement(4574768..4577023) 1 NC_008699.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II 4577023 4596844 Noca_4326 Nocardioides sp. JS614 phosphoribosylformylglycinamidine synthase II YP_925510.1 4574768 R 196162 CDS YP_925511.1 119718546 4596845 complement(4577207..4577755) 1 NC_008699.1 PFAM: regulatory protein, TetR; KEGG: sma:SAV6352 TetR-family transcriptional regulator; regulatory protein TetR 4577755 4596845 Noca_4327 Nocardioides sp. JS614 regulatory protein TetR YP_925511.1 4577207 R 196162 CDS YP_925512.1 119718547 4596846 4577888..4579336 1 NC_008699.1 PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV6351 transmembrane efflux protein; major facilitator transporter 4579336 4596846 Noca_4328 Nocardioides sp. JS614 major facilitator transporter YP_925512.1 4577888 D 196162 CDS YP_925513.1 119718548 4596847 complement(4579359..4579619) 1 NC_008699.1 hypothetical protein 4579619 4596847 Noca_4329 Nocardioides sp. JS614 hypothetical protein YP_925513.1 4579359 R 196162 CDS YP_925514.1 119718549 4596848 4579841..4581298 1 NC_008699.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: sma:SAV6085 hypothetical protein; peptidoglycan binding domain-containing protein 4581298 4596848 Noca_4330 Nocardioides sp. JS614 peptidoglycan binding domain-containing protein YP_925514.1 4579841 D 196162 CDS YP_925515.1 119718550 4596849 complement(4581318..4581764) 1 NC_008699.1 KEGG: lxx:Lxx22990 membrane protein; membrane protein 4581764 4596849 Noca_4331 Nocardioides sp. JS614 membrane protein YP_925515.1 4581318 R 196162 CDS YP_925516.1 119718551 4596850 complement(4581761..4582429) 1 NC_008699.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I 4582429 4596850 Noca_4332 Nocardioides sp. JS614 phosphoribosylformylglycinamidine synthase I YP_925516.1 4581761 R 196162 CDS YP_925517.1 119718552 4596851 complement(4582426..4582683) 1 NC_008699.1 TIGRFAM: phosphoribosylformylglycinamidine synthase, purS; PFAM: phosphoribosylformylglycinamidine synthetase PurS; KEGG: sma:SAV4140 phosphoribosylformylglycinamidine synthase; phosphoribosylformylglycinamidine synthase PurS 4582683 4596851 Noca_4333 Nocardioides sp. JS614 phosphoribosylformylglycinamidine synthase PurS YP_925517.1 4582426 R 196162 CDS YP_925518.1 119718553 4596852 4582767..4583270 1 NC_008699.1 KEGG: pac:PPA0648 hypothetical protein; hypothetical protein 4583270 4596852 Noca_4334 Nocardioides sp. JS614 hypothetical protein YP_925518.1 4582767 D 196162 CDS YP_925519.1 119718554 4596853 complement(4583397..4584962) 1 NC_008699.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rha:RHA1_ro03779 long-chain-fatty-acid--CoA ligase; AMP-dependent synthetase and ligase 4584962 4596853 Noca_4335 Nocardioides sp. JS614 AMP-dependent synthetase and ligase YP_925519.1 4583397 R 196162 CDS YP_925520.1 119718555 4596854 complement(4585067..4585474) 1 NC_008699.1 hypothetical protein 4585474 4596854 Noca_4336 Nocardioides sp. JS614 hypothetical protein YP_925520.1 4585067 R 196162 CDS YP_925521.1 119718556 4596855 complement(4585468..4586322) 1 NC_008699.1 KEGG: sma:SAV4146 putative phosphoribosylaminoimidazole-succinocar boxamide synthetase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; phosphoribosylaminoimidazole-succinocarboxamide synthase 4586322 4596855 Noca_4337 Nocardioides sp. JS614 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_925521.1 4585468 R 196162 CDS YP_925522.1 119718557 4596856 4586416..4587030 1 NC_008699.1 KEGG: sma:SAV48 hypothetical protein; hypothetical protein 4587030 4596856 Noca_4338 Nocardioides sp. JS614 hypothetical protein YP_925522.1 4586416 D 196162 CDS YP_925523.1 119718558 4596857 complement(4587049..4587348) 1 NC_008699.1 PFAM: acylphosphatase; KEGG: tko:TK2031 acylphosphatase; acylphosphatase 4587348 4596857 Noca_4339 Nocardioides sp. JS614 acylphosphatase YP_925523.1 4587049 R 196162 CDS YP_925524.1 119718559 4596858 4587365..4588807 1 NC_008699.1 PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO0680 transmembrane efflux protein; major facilitator transporter 4588807 4596858 Noca_4340 Nocardioides sp. JS614 major facilitator transporter YP_925524.1 4587365 D 196162 CDS YP_925525.1 119718560 4596859 complement(4588817..4590247) 1 NC_008699.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 4590247 4596859 Noca_4341 Nocardioides sp. JS614 adenylosuccinate lyase YP_925525.1 4588817 R 196162 CDS YP_925526.1 119718561 4596860 complement(4590349..4591599) 1 NC_008699.1 KEGG: sma:SAV4149 putative phosphoribosylglycinamide synthetase; TIGRFAM: phosphoribosylamine--glycine ligase; PFAM: phosphoribosylglycinamide synthetase; phosphoribosylamine--glycine ligase 4591599 4596860 Noca_4342 Nocardioides sp. JS614 phosphoribosylamine--glycine ligase YP_925526.1 4590349 R 196162 CDS YP_925527.1 119718562 4596861 complement(4591611..4592522) 1 NC_008699.1 PFAM: Catalase domain protein; KEGG: mpa:MAP2744c hypothetical protein; catalase domain-containing protein 4592522 4596861 Noca_4343 Nocardioides sp. JS614 catalase domain-containing protein YP_925527.1 4591611 R 196162 CDS YP_925528.1 119718563 4596862 complement(4592536..4593834) 1 NC_008699.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 4593834 4596862 Noca_4344 Nocardioides sp. JS614 adenylosuccinate synthetase YP_925528.1 4592536 R 196162 CDS YP_925529.1 119718564 4596863 4593998..4594894 1 NC_008699.1 PFAM: diacylglycerol kinase, catalytic region; KEGG: ade:Adeh_3510 hypothetical protein; diacylglycerol kinase catalytic subunit 4594894 4596863 Noca_4345 Nocardioides sp. JS614 diacylglycerol kinase catalytic subunit YP_925529.1 4593998 D 196162 CDS YP_925530.1 119718565 4596864 complement(4595163..4596155) 1 NC_008699.1 PFAM: Helix-turn-helix, type 11 domain protein; KEGG: sco:SCO1353 transcriptional regulator; helix-turn-helix, type 11 domain-containing protein 4596155 4596864 Noca_4346 Nocardioides sp. JS614 helix-turn-helix, type 11 domain-containing protein YP_925530.1 4595163 R 196162 CDS YP_925531.1 119718566 4596865 complement(4596343..4597893) 1 NC_008699.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 4597893 lysS 4596865 lysS Nocardioides sp. JS614 lysyl-tRNA synthetase YP_925531.1 4596343 R 196162 CDS YP_925532.1 119718567 4596866 complement(4597924..4598406) 1 NC_008699.1 KEGG: sco:SCO3647 hypothetical protein; hypothetical protein 4598406 4596866 Noca_4348 Nocardioides sp. JS614 hypothetical protein YP_925532.1 4597924 R 196162 CDS YP_925533.1 119718568 4596867 4598438..4599919 1 NC_008699.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro06023 multidrug efflux transport protein; EmrB/QacA family drug resistance transporter 4599919 4596867 Noca_4349 Nocardioides sp. JS614 EmrB/QacA family drug resistance transporter YP_925533.1 4598438 D 196162 CDS YP_925534.1 119718569 4596868 complement(4599986..4601017) 1 NC_008699.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase 4601017 4596868 Noca_4350 Nocardioides sp. JS614 fructose-bisphosphate aldolase YP_925534.1 4599986 R 196162 CDS YP_925535.1 119718570 4596869 4601185..4601655 1 NC_008699.1 KEGG: nfa:nfa30040 hypothetical protein; hypothetical protein 4601655 4596869 Noca_4351 Nocardioides sp. JS614 hypothetical protein YP_925535.1 4601185 D 196162 CDS YP_925536.1 119718571 4596870 complement(4601675..4602334) 1 NC_008699.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: tfu:Tfu_2449 tRNA/rRNA methyltransferase; tRNA/rRNA methyltransferase SpoU 4602334 4596870 Noca_4352 Nocardioides sp. JS614 tRNA/rRNA methyltransferase SpoU YP_925536.1 4601675 R 196162 CDS YP_925537.1 119718572 4596871 4602433..4603176 1 NC_008699.1 KEGG: pac:PPA2014 conserved membrane protein (DedA family); DedA family membrane protein 4603176 4596871 Noca_4353 Nocardioides sp. JS614 DedA family membrane protein YP_925537.1 4602433 D 196162 CDS YP_925538.1 119718573 4596872 complement(4603225..4603764) 1 NC_008699.1 TIGRFAM: orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: fal:FRAAL1055 orotate phosphoribosyltransferase (OprT) (OPRTase); orotate phosphoribosyltransferase 4603764 4596872 Noca_4354 Nocardioides sp. JS614 orotate phosphoribosyltransferase YP_925538.1 4603225 R 196162 CDS YP_925539.1 119718574 4596873 4603808..4604965 1 NC_008699.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase, class I and II; KEGG: sma:SAV4517 putative aminotransferase; succinyldiaminopimelate aminotransferase 4604965 4596873 Noca_4355 Nocardioides sp. JS614 succinyldiaminopimelate aminotransferase YP_925539.1 4603808 D 196162 CDS YP_925540.1 119718575 4596874 complement(4605026..4606030) 1 NC_008699.1 hypothetical protein 4606030 4596874 Noca_4356 Nocardioides sp. JS614 hypothetical protein YP_925540.1 4605026 R 196162 CDS YP_925541.1 119718576 4596875 complement(4606087..4608687) 1 NC_008699.1 PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: tfu:Tfu_0200 ATPase; ATPase 4608687 4596875 Noca_4357 Nocardioides sp. JS614 ATPase YP_925541.1 4606087 R 196162 CDS YP_925542.1 119718577 4596876 4608818..4609612 1 NC_008699.1 PFAM: pentapeptide repeat protein; KEGG: fra:Francci3_2300 pentapeptide repeat; pentapeptide repeat-containing protein 4609612 4596876 Noca_4358 Nocardioides sp. JS614 pentapeptide repeat-containing protein YP_925542.1 4608818 D 196162 CDS YP_925543.1 119718578 4596877 4609703..4611187 1 NC_008699.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: mxa:MXAN_0340 sensory box histidine kinase; ATPase domain-containing protein 4611187 4596877 Noca_4359 Nocardioides sp. JS614 ATPase domain-containing protein YP_925543.1 4609703 D 196162 CDS YP_925544.1 119718579 4596878 complement(4611218..4611652) 1 NC_008699.1 PFAM: regulatory protein, MerR; KEGG: fal:FRAAL6642 putative heat shock protein HspR; regulatory protein MerR 4611652 4596878 Noca_4360 Nocardioides sp. JS614 regulatory protein MerR YP_925544.1 4611218 R 196162 CDS YP_925545.1 119718580 4596879 complement(4611654..4612844) 1 NC_008699.1 TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ central domain protein; heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: sco:SCO3669 molecular chaperone; chaperone protein DnaJ 4612844 4596879 Noca_4361 Nocardioides sp. JS614 chaperone protein DnaJ YP_925545.1 4611654 R 196162 CDS YP_925546.1 119718581 4596880 complement(4612909..4613547) 1 NC_008699.1 PFAM: GrpE protein; KEGG: sco:SCO3670 heat chock protein; GrpE protein HSP-70 cofactor 4613547 4596880 Noca_4362 Nocardioides sp. JS614 GrpE protein HSP-70 cofactor YP_925546.1 4612909 R 196162 CDS YP_925547.1 119718582 4596881 complement(4613544..4615409) 1 NC_008699.1 TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70; KEGG: sma:SAV4484 putative heat shock protein hsp70; chaperone protein DnaK 4615409 4596881 Noca_4363 Nocardioides sp. JS614 chaperone protein DnaK YP_925547.1 4613544 R 196162 CDS YP_925548.1 119718583 4596882 4615463..4616380 1 NC_008699.1 TIGRFAM: aspartate racemase; PFAM: Asp/Glu racemase; KEGG: rfr:Rfer_3727 aspartate racemase; aspartate racemase 4616380 4596882 Noca_4364 Nocardioides sp. JS614 aspartate racemase YP_925548.1 4615463 D 196162 CDS YP_925549.1 119718584 4596883 4616422..4617312 1 NC_008699.1 hypothetical protein 4617312 4596883 Noca_4365 Nocardioides sp. JS614 hypothetical protein YP_925549.1 4616422 D 196162 CDS YP_925550.1 119718585 4596884 complement(4617340..4617837) 1 NC_008699.1 PFAM: regulatory protein, MarR; KEGG: atc:AGR_C_466 hypothetical protein; MarR family transcriptional regulator 4617837 4596884 Noca_4366 Nocardioides sp. JS614 MarR family transcriptional regulator YP_925550.1 4617340 R 196162 CDS YP_925551.1 119718586 4596885 4617868..4618824 1 NC_008699.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: sco:SCO2646 integral membrane protein; hypothetical protein 4618824 4596885 Noca_4367 Nocardioides sp. JS614 hypothetical protein YP_925551.1 4617868 D 196162 CDS YP_925552.1 119718587 4596886 complement(4618743..4619318) 1 NC_008699.1 hypothetical protein 4619318 4596886 Noca_4368 Nocardioides sp. JS614 hypothetical protein YP_925552.1 4618743 R 196162 CDS YP_925553.1 119718588 4596887 complement(4619415..4619855) 1 NC_008699.1 KEGG: mmc:Mmcs_2007 hypothetical protein; hypothetical protein 4619855 4596887 Noca_4369 Nocardioides sp. JS614 hypothetical protein YP_925553.1 4619415 R 196162 CDS YP_925554.1 119718589 4596888 4619926..4620780 1 NC_008699.1 KEGG: nfa:nfa29530 hypothetical protein; hypothetical protein 4620780 4596888 Noca_4370 Nocardioides sp. JS614 hypothetical protein YP_925554.1 4619926 D 196162 CDS YP_925555.1 119718590 4596889 4620780..4621931 1 NC_008699.1 KEGG: nfa:nfa24570 hypothetical protein; hypothetical protein 4621931 4596889 Noca_4371 Nocardioides sp. JS614 hypothetical protein YP_925555.1 4620780 D 196162 CDS YP_925556.1 119718591 4596890 4621931..4622770 1 NC_008699.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro01522 short chain dehydrogenase; short chain dehydrogenase 4622770 4596890 Noca_4372 Nocardioides sp. JS614 short chain dehydrogenase YP_925556.1 4621931 D 196162 CDS YP_925557.1 119718592 4596891 4622832..4623992 1 NC_008699.1 KEGG: nfa:nfa24590 hypothetical protein; hypothetical protein 4623992 4596891 Noca_4373 Nocardioides sp. JS614 hypothetical protein YP_925557.1 4622832 D 196162 CDS YP_925558.1 119718593 4596892 4624060..4624794 1 NC_008699.1 KEGG: sco:SCO0378 conserved secreted protein; hypothetical protein 4624794 4596892 Noca_4374 Nocardioides sp. JS614 hypothetical protein YP_925558.1 4624060 D 196162 CDS YP_925559.1 119718594 4596893 complement(4624876..4626270) 1 NC_008699.1 PFAM: cytochrome P450; KEGG: mtc:MT0342 P450 heme-thiolate protein; cytochrome P450 4626270 4596893 Noca_4375 Nocardioides sp. JS614 cytochrome P450 YP_925559.1 4624876 R 196162 CDS YP_925560.1 119718595 4596894 complement(4626336..4627088) 1 NC_008699.1 KEGG: tfu:Tfu_2504 putative integral membrane protein; putative integral membrane protein 4627088 4596894 Noca_4376 Nocardioides sp. JS614 putative integral membrane protein YP_925560.1 4626336 R 196162 CDS YP_925561.1 119718596 4596895 complement(4627199..4628110) 1 NC_008699.1 PFAM: Sucraseferredoxin family protein; KEGG: rha:RHA1_ro03455 hypothetical protein; sucraseferredoxin family protein 4628110 4596895 Noca_4377 Nocardioides sp. JS614 sucraseferredoxin family protein YP_925561.1 4627199 R 196162 CDS YP_925562.1 119718597 4596896 complement(4628107..4629318) 1 NC_008699.1 PFAM: Cupin 4 family protein; KEGG: mmc:Mmcs_5250 cupin 4; cupin 4 family protein 4629318 4596896 Noca_4378 Nocardioides sp. JS614 cupin 4 family protein YP_925562.1 4628107 R 196162 CDS YP_925563.1 119718598 4596897 complement(4629319..4629543) 1 NC_008699.1 KEGG: pfa:PFI1205c hypothetical protein; hypothetical protein 4629543 4596897 Noca_4379 Nocardioides sp. JS614 hypothetical protein YP_925563.1 4629319 R 196162 CDS YP_925564.1 119718599 4596898 complement(4629589..4630443) 1 NC_008699.1 PFAM: Sucraseferredoxin family protein; KEGG: nfa:nfa9080 hypothetical protein; sucraseferredoxin family protein 4630443 4596898 Noca_4380 Nocardioides sp. JS614 sucraseferredoxin family protein YP_925564.1 4629589 R 196162 CDS YP_925565.1 119718600 4596899 4630577..4631722 1 NC_008699.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cef:CE1938 putative coenzyme PQQ synthesis protein; radical SAM domain-containing protein 4631722 4596899 Noca_4381 Nocardioides sp. JS614 radical SAM domain-containing protein YP_925565.1 4630577 D 196162 CDS YP_925566.1 119718601 4596900 complement(4631768..4634788) 1 NC_008699.1 PFAM: regulatory protein, LuxR; Bacterio-opsin activator, HTH domain protein; Tetratricopeptide TPR_4; KEGG: sma:SAV2729 LuxR-family transcriptional regulator; regulatory protein LuxR 4634788 4596900 Noca_4382 Nocardioides sp. JS614 regulatory protein LuxR YP_925566.1 4631768 R 196162 CDS YP_925567.1 119718602 4596901 complement(4635033..4636031) 1 NC_008699.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: ade:Adeh_2267 transcriptional regulator, AraC family; AraC family transcriptional regulator 4636031 4596901 Noca_4383 Nocardioides sp. JS614 AraC family transcriptional regulator YP_925567.1 4635033 R 196162 CDS YP_925568.1 119718603 4596902 4636163..4636417 1 NC_008699.1 KEGG: ret:RHE_CH02031 putative gualylate cyclase protein; putative gualylate cyclase protein 4636417 4596902 Noca_4384 Nocardioides sp. JS614 putative gualylate cyclase protein YP_925568.1 4636163 D 196162 CDS YP_925569.1 119718604 4596903 complement(4636438..4637613) 1 NC_008699.1 catalyzes the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase 4637613 4596903 Noca_4385 Nocardioides sp. JS614 imidazolonepropionase YP_925569.1 4636438 R 196162 CDS YP_925570.1 119718605 4596904 complement(4637598..4638890) 1 NC_008699.1 catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate; N-formimino-L-glutamate deiminase 4638890 4596904 Noca_4386 Nocardioides sp. JS614 N-formimino-L-glutamate deiminase YP_925570.1 4637598 R 196162 CDS YP_925571.1 119718606 4596905 complement(4638887..4640071) 1 NC_008699.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 4640071 4596905 Noca_4387 Nocardioides sp. JS614 allantoate amidohydrolase YP_925571.1 4638887 R 196162 CDS YP_925572.1 119718607 4596906 4640094..4640729 1 NC_008699.1 PFAM: nitroreductase; KEGG: dde:Dde_1353 nitroreductase family protein; nitroreductase 4640729 4596906 Noca_4388 Nocardioides sp. JS614 nitroreductase YP_925572.1 4640094 D 196162 CDS YP_925573.1 119718608 4596907 4640806..4642128 1 NC_008699.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: mxa:MXAN_2289 peptidase, M20E (Gly-X carboxypeptidase) subfamily; hypothetical protein 4642128 4596907 Noca_4389 Nocardioides sp. JS614 hypothetical protein YP_925573.1 4640806 D 196162 CDS YP_925574.1 119718609 4596908 4642128..4643603 1 NC_008699.1 PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro00430 multidrug resistance transporter, MFS superfamily; major facilitator transporter 4643603 4596908 Noca_4390 Nocardioides sp. JS614 major facilitator transporter YP_925574.1 4642128 D 196162 CDS YP_925575.1 119718610 4596909 4643689..4644255 1 NC_008699.1 KEGG: nfa:nfa29360 hypothetical protein; hypothetical protein 4644255 4596909 Noca_4391 Nocardioides sp. JS614 hypothetical protein YP_925575.1 4643689 D 196162 CDS YP_925576.1 119718611 4596910 4644252..4645097 1 NC_008699.1 converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase 4645097 4596910 Noca_4392 Nocardioides sp. JS614 3-hydroxybutyryl-CoA dehydrogenase YP_925576.1 4644252 D 196162 CDS YP_925577.1 119718612 4596911 4645202..4646293 1 NC_008699.1 PFAM: HpcH/HpaI aldolase; KEGG: fra:Francci3_2805 HpcH/HpaI aldolase; HpcH/HpaI aldolase 4646293 4596911 Noca_4393 Nocardioides sp. JS614 HpcH/HpaI aldolase YP_925577.1 4645202 D 196162 CDS YP_925578.1 119718613 4596912 4646290..4647168 1 NC_008699.1 PFAM: HpcH/HpaI aldolase; KEGG: fal:FRAAL5522 citrate lyase beta subunit; citryl-CoA lyase 4647168 4596912 Noca_4394 Nocardioides sp. JS614 citryl-CoA lyase YP_925578.1 4646290 D 196162 CDS YP_925579.1 119718614 4596913 4647247..4647390 1 NC_008699.1 KEGG: rha:RHA1_ro05133 hypothetical protein; hypothetical protein 4647390 4596913 Noca_4395 Nocardioides sp. JS614 hypothetical protein YP_925579.1 4647247 D 196162 CDS YP_925580.1 119718615 4596914 complement(4647455..4648549) 1 NC_008699.1 PFAM: peptidase M48, Ste24p; KEGG: tfu:Tfu_2172 hypothetical protein; peptidase M48, Ste24p 4648549 4596914 Noca_4396 Nocardioides sp. JS614 peptidase M48, Ste24p YP_925580.1 4647455 R 196162 CDS YP_925581.1 119718616 4596915 complement(4648593..4650260) 1 NC_008699.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 4650260 4596915 Noca_4397 Nocardioides sp. JS614 urocanate hydratase YP_925581.1 4648593 R 196162 CDS YP_925582.1 119718617 4596916 complement(4650257..4651858) 1 NC_008699.1 catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 4651858 4596916 Noca_4398 Nocardioides sp. JS614 histidine ammonia-lyase YP_925582.1 4650257 R 196162 CDS YP_925583.1 119718618 4596917 4652179..4653459 1 NC_008699.1 KEGG: rxy:Rxyl_0139 LigA; hypothetical protein 4653459 4596917 Noca_4399 Nocardioides sp. JS614 hypothetical protein YP_925583.1 4652179 D 196162 CDS YP_925584.1 119718619 4596918 4653530..4654723 1 NC_008699.1 PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro06491 transporter, MFS superfamily; major facilitator transporter 4654723 4596918 Noca_4400 Nocardioides sp. JS614 major facilitator transporter YP_925584.1 4653530 D 196162 CDS YP_925585.1 119718620 4596919 4654876..4655232 1 NC_008699.1 KEGG: rha:RHA1_ro05135 hypothetical protein; hypothetical protein 4655232 4596919 Noca_4401 Nocardioides sp. JS614 hypothetical protein YP_925585.1 4654876 D 196162 CDS YP_925586.1 119718621 4596920 4655243..4656013 1 NC_008699.1 PFAM: regulatory proteins, IclR; KEGG: lxx:Lxx22150 transcriptional regulator, IclR family; regulatory proteins IclR 4656013 4596920 Noca_4402 Nocardioides sp. JS614 regulatory proteins IclR YP_925586.1 4655243 D 196162 CDS YP_925587.1 119718622 4596921 4656072..4658501 1 NC_008699.1 KEGG: mxa:MXAN_3638 peptidase, M19 family; hypothetical protein 4658501 4596921 Noca_4403 Nocardioides sp. JS614 hypothetical protein YP_925587.1 4656072 D 196162 CDS YP_925588.1 119718623 4596922 4658649..4661750 1 NC_008699.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: mpa:MAP3831c hypothetical protein; hypothetical protein 4661750 4596922 Noca_4404 Nocardioides sp. JS614 hypothetical protein YP_925588.1 4658649 D 196162 CDS YP_925589.1 119718624 4596923 4661916..4662872 1 NC_008699.1 hypothetical protein 4662872 4596923 Noca_4405 Nocardioides sp. JS614 hypothetical protein YP_925589.1 4661916 D 196162 CDS YP_925590.1 119718625 4596924 complement(4662854..4663132) 1 NC_008699.1 KEGG: cdi:DIP1013 hypothetical protein; hypothetical protein 4663132 4596924 Noca_4406 Nocardioides sp. JS614 hypothetical protein YP_925590.1 4662854 R 196162 CDS YP_925591.1 119718626 4596925 complement(4663143..4664984) 1 NC_008699.1 TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: pac:PPA2193 sodium:solute symporter; SSS family solute/sodium (Na+) symporter 4664984 4596925 Noca_4407 Nocardioides sp. JS614 SSS family solute/sodium (Na+) symporter YP_925591.1 4663143 R 196162 CDS YP_925592.1 119718627 4596926 4665092..4665586 1 NC_008699.1 KEGG: fra:Francci3_2434 hypothetical protein; hypothetical protein 4665586 4596926 Noca_4408 Nocardioides sp. JS614 hypothetical protein YP_925592.1 4665092 D 196162 CDS YP_925593.1 119718628 4596927 4665679..4666503 1 NC_008699.1 KEGG: rha:RHA1_ro02601 hypothetical protein; hypothetical protein 4666503 4596927 Noca_4409 Nocardioides sp. JS614 hypothetical protein YP_925593.1 4665679 D 196162 CDS YP_925594.1 119718629 4596928 4666535..4666690 1 NC_008699.1 hypothetical protein 4666690 4596928 Noca_4410 Nocardioides sp. JS614 hypothetical protein YP_925594.1 4666535 D 196162 CDS YP_925595.1 119718630 4596929 complement(4666773..4667135) 1 NC_008699.1 PFAM: FAD-binding 9, siderophore-interacting domain protein; KEGG: cgb:cg0767 siderophore-interacting protein; FAD-binding 9, siderophore-interacting domain-containing protein 4667135 4596929 Noca_4411 Nocardioides sp. JS614 FAD-binding 9, siderophore-interacting domain-containing protein YP_925595.1 4666773 R 196162 CDS YP_925596.1 119718631 4596930 complement(4667163..4667738) 1 NC_008699.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 4667738 dcd 4596930 dcd Nocardioides sp. JS614 deoxycytidine triphosphate deaminase YP_925596.1 4667163 R 196162 CDS YP_925597.1 119718632 4596931 4667803..4668603 1 NC_008699.1 PFAM: lipolytic enzyme, G-D-S-L family; KEGG: lxx:Lxx11940 hypothetical protein; GDSL family lipase 4668603 4596931 Noca_4413 Nocardioides sp. JS614 GDSL family lipase YP_925597.1 4667803 D 196162 CDS YP_925598.1 119718633 4596933 4669623..4670933 1 NC_008699.1 KEGG: bps:BPSS2166 hypothetical protein; hypothetical protein 4670933 4596933 Noca_4414 Nocardioides sp. JS614 hypothetical protein YP_925598.1 4669623 D 196162 CDS YP_925599.1 119718634 4596934 4670933..4672030 1 NC_008699.1 hypothetical protein 4672030 4596934 Noca_4415 Nocardioides sp. JS614 hypothetical protein YP_925599.1 4670933 D 196162 CDS YP_925600.1 119718635 4596935 4672209..4672850 1 NC_008699.1 KEGG: nfa:nfa48830 hypothetical protein; hypothetical protein 4672850 4596935 Noca_4416 Nocardioides sp. JS614 hypothetical protein YP_925600.1 4672209 D 196162 CDS YP_925601.1 119718636 4596936 complement(4672868..4673320) 1 NC_008699.1 PFAM: nuclear transport factor 2; KEGG: mpa:MAP0541c hypothetical protein; nuclear transport factor 2 4673320 4596936 Noca_4417 Nocardioides sp. JS614 nuclear transport factor 2 YP_925601.1 4672868 R 196162 CDS YP_925602.1 119718637 4596937 4673438..4674556 1 NC_008699.1 hypothetical protein 4674556 4596937 Noca_4418 Nocardioides sp. JS614 hypothetical protein YP_925602.1 4673438 D 196162 CDS YP_925603.1 119718638 4596938 complement(4674566..4675024) 1 NC_008699.1 TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: rha:RHA1_ro04161 possible transcriptional regulator; BadM/Rrf2 family transcriptional regulator 4675024 4596938 Noca_4419 Nocardioides sp. JS614 BadM/Rrf2 family transcriptional regulator YP_925603.1 4674566 R 196162 CDS YP_925604.1 119718639 4596939 complement(4675115..4676011) 1 NC_008699.1 PFAM: protein of unknown function DUF81; KEGG: tfu:Tfu_1694 hypothetical protein; hypothetical protein 4676011 4596939 Noca_4420 Nocardioides sp. JS614 hypothetical protein YP_925604.1 4675115 R 196162 CDS YP_925605.1 119718640 4596940 4676265..4676774 1 NC_008699.1 KEGG: fra:Francci3_3736 conserved hypothetical protein; hypothetical protein 4676774 4596940 Noca_4421 Nocardioides sp. JS614 hypothetical protein YP_925605.1 4676265 D 196162 CDS YP_925606.1 119718641 4596941 4676771..4677484 1 NC_008699.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sma:SAV5250 two-component system response regulator; response regulator receiver 4677484 4596941 Noca_4422 Nocardioides sp. JS614 response regulator receiver YP_925606.1 4676771 D 196162 CDS YP_925607.1 119718642 4596942 4677492..4678841 1 NC_008699.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: sma:SAV5251 two-component system sensor kinase; ATPase domain-containing protein 4678841 4596942 Noca_4423 Nocardioides sp. JS614 ATPase domain-containing protein YP_925607.1 4677492 D 196162 CDS YP_925608.1 119718643 4596943 4678915..4679184 1 NC_008699.1 KEGG: mlo:mlr0587 hypothetical glycine-rich protein; hypothetical protein 4679184 4596943 Noca_4424 Nocardioides sp. JS614 hypothetical protein YP_925608.1 4678915 D 196162 CDS YP_925609.1 119718644 4596944 4679181..4680110 1 NC_008699.1 PFAM: ApbE family lipoprotein; KEGG: fal:FRAAL3949 putative thiamine biosynthesis lipoprotein, ApbE-like; ApbE family lipoprotein 4680110 4596944 Noca_4425 Nocardioides sp. JS614 ApbE family lipoprotein YP_925609.1 4679181 D 196162 CDS YP_925610.1 119718645 4596945 4680107..4680724 1 NC_008699.1 KEGG: fal:FRAAL3950 hypothetical protein; putative membrane protein; hypothetical protein 4680724 4596945 Noca_4426 Nocardioides sp. JS614 hypothetical protein YP_925610.1 4680107 D 196162 CDS YP_925611.1 119718646 4596946 4680721..4681959 1 NC_008699.1 PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: sco:SCP1.160c putative oxidoreductase; respiratory-chain NADH dehydrogenase domain-containing protein 4681959 4596946 Noca_4427 Nocardioides sp. JS614 respiratory-chain NADH dehydrogenase domain-containing protein YP_925611.1 4680721 D 196162 CDS YP_925612.1 119718647 4596947 4681956..4682147 1 NC_008699.1 KEGG: sma:SAV5486 oxidoreductase; oxidoreductase 4682147 4596947 Noca_4428 Nocardioides sp. JS614 oxidoreductase YP_925612.1 4681956 D 196162 CDS YP_925613.1 119718648 4596948 4682576..4684441 1 NC_008699.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: sma:SAV4390 putative acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 4684441 4596948 Noca_4429 Nocardioides sp. JS614 acyl-CoA dehydrogenase domain-containing protein YP_925613.1 4682576 D 196162 CDS YP_925614.1 119718649 4596949 4684534..4684764 1 NC_008699.1 hypothetical protein 4684764 4596949 Noca_4430 Nocardioides sp. JS614 hypothetical protein YP_925614.1 4684534 D 196162 CDS YP_925615.1 119718650 4596950 complement(4684775..4685656) 1 NC_008699.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 4685656 4596950 Noca_4431 Nocardioides sp. JS614 chromosome replication initiation inhibitor protein YP_925615.1 4684775 R 196162 CDS YP_925616.1 119718651 4596951 4685727..4686329 1 NC_008699.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: xcv:XCV3263 L-lysine exporter family protein; lysine exporter protein LysE/YggA 4686329 4596951 Noca_4432 Nocardioides sp. JS614 lysine exporter protein LysE/YggA YP_925616.1 4685727 D 196162 CDS YP_925617.1 119718652 4596952 4686340..4687176 1 NC_008699.1 KEGG: mbo:Mb3126c hypothetical protein; hypothetical protein 4687176 4596952 Noca_4433 Nocardioides sp. JS614 hypothetical protein YP_925617.1 4686340 D 196162 CDS YP_925618.1 119718653 4596953 4687184..4688134 1 NC_008699.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mbo:Mb0069 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 4688134 4596953 Noca_4434 Nocardioides sp. JS614 short-chain dehydrogenase/reductase SDR YP_925618.1 4687184 D 196162 CDS YP_925619.1 119718654 4596954 complement(4688125..4689570) 1 NC_008699.1 KEGG: nfa:nfa44140 hypothetical protein; hypothetical protein 4689570 4596954 Noca_4435 Nocardioides sp. JS614 hypothetical protein YP_925619.1 4688125 R 196162 CDS YP_925620.1 119718655 4596955 4689650..4690474 1 NC_008699.1 PFAM: aldo/keto reductase; KEGG: ecj:JW1403 predicted oxidoreductase, NAD(P)-binding; aldo/keto reductase 4690474 4596955 Noca_4436 Nocardioides sp. JS614 aldo/keto reductase YP_925620.1 4689650 D 196162 CDS YP_925621.1 119718656 4596956 complement(4690478..4691194) 1 NC_008699.1 KEGG: fal:FRAAL4052 hypothetical membrane protein; hypothetical protein 4691194 4596956 Noca_4437 Nocardioides sp. JS614 hypothetical protein YP_925621.1 4690478 R 196162 CDS YP_925622.1 119718657 4596957 4691218..4692912 1 NC_008699.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 4692912 4596957 Noca_4438 Nocardioides sp. JS614 phosphoglucomutase YP_925622.1 4691218 D 196162 CDS YP_925623.1 119718658 4596958 complement(4692917..4693330) 1 NC_008699.1 hypothetical protein 4693330 4596958 Noca_4439 Nocardioides sp. JS614 hypothetical protein YP_925623.1 4692917 R 196162 CDS YP_925624.1 119718659 4596959 complement(4693350..4694141) 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fal:FRAAL0729 high-affinity branched-chain amino acid transport protein (ABC superfamily, atp_bind); ABC transporter-like protein 4694141 4596959 Noca_4440 Nocardioides sp. JS614 ABC transporter-like protein YP_925624.1 4693350 R 196162 CDS YP_925625.1 119718660 4596960 complement(4694141..4695952) 1 NC_008699.1 PFAM: inner-membrane translocator; ABC transporter related; KEGG: bme:BMEII0874 high-affinity branched-chain amino acid transport system permease protein LivH / high-affinity branched-chain amino acid transport ATP-binding protein LivG; ABC transporter-like protein 4695952 4596960 Noca_4441 Nocardioides sp. JS614 ABC transporter-like protein YP_925625.1 4694141 R 196162 CDS YP_925626.1 119718661 4596961 complement(4695949..4696833) 1 NC_008699.1 PFAM: inner-membrane translocator; KEGG: gsu:GSU2006 branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator 4696833 4596961 Noca_4442 Nocardioides sp. JS614 inner-membrane translocator YP_925626.1 4695949 R 196162 CDS YP_925627.1 119718662 4596962 complement(4696833..4698074) 1 NC_008699.1 PFAM: Extracellular ligand-binding receptor; KEGG: hwa:HQ3182A ABC-type branched-chain amino acid transport systems, substrate-binding protein; extracellular ligand-binding receptor 4698074 4596962 Noca_4443 Nocardioides sp. JS614 extracellular ligand-binding receptor YP_925627.1 4696833 R 196162 CDS YP_925628.1 119718663 4596963 4698265..4699836 1 NC_008699.1 PFAM: FAD dependent oxidoreductase; KEGG: ana:all3744 probable phytoene dehydrogenase; FAD dependent oxidoreductase 4699836 4596963 Noca_4444 Nocardioides sp. JS614 FAD dependent oxidoreductase YP_925628.1 4698265 D 196162 CDS YP_925629.1 119718664 4596964 4699868..4700809 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO3956 putative ABC transporter ATP-binding protein; ABC transporter-like protein 4700809 4596964 Noca_4445 Nocardioides sp. JS614 ABC transporter-like protein YP_925629.1 4699868 D 196162 CDS YP_925630.1 119718665 4596965 4700793..4701704 1 NC_008699.1 KEGG: sco:SCO3957 possible integral membrane protein; putative integral membrane protein 4701704 4596965 Noca_4446 Nocardioides sp. JS614 putative integral membrane protein YP_925630.1 4700793 D 196162 CDS YP_925631.1 119718666 4596966 4701704..4702615 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV4248 putative ABC transporter ATP-binding protein; ABC transporter-like protein 4702615 4596966 Noca_4447 Nocardioides sp. JS614 ABC transporter-like protein YP_925631.1 4701704 D 196162 CDS YP_925632.1 119718667 4596967 4702612..4703331 1 NC_008699.1 KEGG: sco:SCO3959 possible integral membrane protein; putative integral membrane protein 4703331 4596967 Noca_4448 Nocardioides sp. JS614 putative integral membrane protein YP_925632.1 4702612 D 196162 CDS YP_925633.1 119718668 4596968 4703518..4704099 1 NC_008699.1 hypothetical protein 4704099 4596968 Noca_4449 Nocardioides sp. JS614 hypothetical protein YP_925633.1 4703518 D 196162 CDS YP_925634.1 119718669 4596969 complement(4704273..4705175) 1 NC_008699.1 PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: lxx:Lxx06230 RNA polymerase, sigma factor; sigma-70 region 4 domain-containing protein 4705175 4596969 Noca_4450 Nocardioides sp. JS614 sigma-70 region 4 domain-containing protein YP_925634.1 4704273 R 196162 CDS YP_925635.1 119718670 4596970 complement(4705385..4705849) 1 NC_008699.1 PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: rha:RHA1_ro06715 hypothetical protein; activator of Hsp90 ATPase 1 family protein 4705849 4596970 Noca_4451 Nocardioides sp. JS614 activator of Hsp90 ATPase 1 family protein YP_925635.1 4705385 R 196162 CDS YP_925636.1 119718671 4596971 4705971..4706804 1 NC_008699.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: hch:HCH_03658 SAM-dependent methyltransferase; type 11 methyltransferase 4706804 4596971 Noca_4452 Nocardioides sp. JS614 type 11 methyltransferase YP_925636.1 4705971 D 196162 CDS YP_925637.1 119718672 4596972 complement(4707091..4708374) 1 NC_008699.1 PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: gbe:GbCGDNIH1_1185 dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; dehydrogenase catalytic domain-containing protein 4708374 4596972 Noca_4453 Nocardioides sp. JS614 dehydrogenase catalytic domain-containing protein YP_925637.1 4707091 R 196162 CDS YP_925638.1 119718673 4596973 complement(4708376..4710556) 1 NC_008699.1 PFAM: dehydrogenase, E1 component; Transketolase, central region; Transketolase domain protein; KEGG: bme:BMEII0061 2-oxoisovalerate dehydrogenase alpha and beta subunit; dehydrogenase, E1 component 4710556 4596973 Noca_4454 Nocardioides sp. JS614 dehydrogenase, E1 component YP_925638.1 4708376 R 196162 CDS YP_925639.1 119718674 4596974 4710700..4711200 1 NC_008699.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cps:CPS_3057 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase 4711200 4596974 Noca_4455 Nocardioides sp. JS614 glyoxalase/bleomycin resistance protein/dioxygenase YP_925639.1 4710700 D 196162 CDS YP_925640.1 119718675 4596975 4711193..4711834 1 NC_008699.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: bxe:Bxe_C0293 transcriptional regulator, GntR family; GntR family transcriptional regulator 4711834 4596975 Noca_4456 Nocardioides sp. JS614 GntR family transcriptional regulator YP_925640.1 4711193 D 196162 CDS YP_925641.1 119718676 4596976 4711831..4712283 1 NC_008699.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: mag:amb1303 aerobic-type carbon monoxide dehydrogenase small subunit CoxS/CutS homolog; 2Fe-2S iron-sulfur cluster binding domain-containing protein 4712283 4596976 Noca_4457 Nocardioides sp. JS614 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_925641.1 4711831 D 196162 CDS YP_925642.1 119718677 4596977 4712280..4714292 1 NC_008699.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: bja:blr6047 putative oxidoreductase protein; aldehyde oxidase and xanthine dehydrogenase 4714292 4596977 Noca_4458 Nocardioides sp. JS614 aldehyde oxidase and xanthine dehydrogenase YP_925642.1 4712280 D 196162 CDS YP_925643.1 119718678 4596978 4714357..4714989 1 NC_008699.1 KEGG: rha:RHA1_ro03794 hypothetical protein; hypothetical protein 4714989 4596978 Noca_4459 Nocardioides sp. JS614 hypothetical protein YP_925643.1 4714357 D 196162 CDS YP_925644.1 119718679 4596979 4715048..4716007 1 NC_008699.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rha:RHA1_ro01058 NADPH:quinone reductase; alcohol dehydrogenase 4716007 4596979 Noca_4460 Nocardioides sp. JS614 alcohol dehydrogenase YP_925644.1 4715048 D 196162 CDS YP_925645.1 119718680 4596980 4716046..4716387 1 NC_008699.1 KEGG: nfa:nfa44070 hypothetical protein; hypothetical protein 4716387 4596980 Noca_4461 Nocardioides sp. JS614 hypothetical protein YP_925645.1 4716046 D 196162 CDS YP_925646.1 119718681 4596981 complement(4716394..4717002) 1 NC_008699.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: cvi:CV3295 hypothetical protein; deaminase-reductase domain-containing protein 4717002 4596981 Noca_4462 Nocardioides sp. JS614 deaminase-reductase domain-containing protein YP_925646.1 4716394 R 196162 CDS YP_925647.1 119718682 4596982 4717089..4718438 1 NC_008699.1 PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV4232 hypothetical protein; major facilitator transporter 4718438 4596982 Noca_4463 Nocardioides sp. JS614 major facilitator transporter YP_925647.1 4717089 D 196162 CDS YP_925648.1 119718683 4596983 complement(4718442..4718675) 1 NC_008699.1 KEGG: rpc:RPC_0104 succinate-semialdehyde dehydrogenase (NAD(P)+); succinate-semialdehyde dehydrogenase (NAD(P)+) 4718675 4596983 Noca_4464 Nocardioides sp. JS614 succinate-semialdehyde dehydrogenase (NAD(P)+) YP_925648.1 4718442 R 196162 CDS YP_925649.1 119718684 4596984 complement(4718706..4719881) 1 NC_008699.1 PFAM: NADH-ubiquinone oxidoreductase, chain 49kDa; KEGG: mbo:Mb0090 possible formate hydrogenase HycQ (FHL); NADH-ubiquinone oxidoreductase, chain 49kDa 4719881 4596984 Noca_4465 Nocardioides sp. JS614 NADH-ubiquinone oxidoreductase, chain 49kDa YP_925649.1 4718706 R 196162 CDS YP_925650.1 119718685 4596985 complement(4720175..4721461) 1 NC_008699.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: mtc:MT0093 NADH-ubiquinone oxidoreductase, putative; NADH dehydrogenase (quinone) 4721461 4596985 Noca_4466 Nocardioides sp. JS614 NADH dehydrogenase (quinone) YP_925650.1 4720175 R 196162 CDS YP_925651.1 119718686 4596986 complement(4721605..4722267) 1 NC_008699.1 KEGG: mbo:Mb0088 possible hydrogenase HycP; putative hydrogenase HycP 4722267 4596986 Noca_4467 Nocardioides sp. JS614 putative hydrogenase HycP YP_925651.1 4721605 R 196162 CDS YP_925652.1 119718687 4596987 complement(4722267..4723217) 1 NC_008699.1 KEGG: mbo:Mb0087 possible formate hydrogenlyase HycD (FHL); putative formate hydrogenlyase HycD (FHL) 4723217 4596987 Noca_4468 Nocardioides sp. JS614 putative formate hydrogenlyase HycD (FHL) YP_925652.1 4722267 R 196162 CDS YP_925653.1 119718688 4596988 complement(4723214..4725208) 1 NC_008699.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: mtc:MT0090 NADH-ubiquinone oxidoreductase, putative; NADH dehydrogenase (quinone) 4725208 4596988 Noca_4469 Nocardioides sp. JS614 NADH dehydrogenase (quinone) YP_925653.1 4723214 R 196162 CDS YP_925654.1 119718689 4596989 complement(4725228..4725716) 1 NC_008699.1 PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: mbo:Mb0085 probable oxidoreductase; NADH ubiquinone oxidoreductase, 20 kDa subunit 4725716 4596989 Noca_4470 Nocardioides sp. JS614 NADH ubiquinone oxidoreductase, 20 kDa subunit YP_925654.1 4725228 R 196162 CDS YP_925655.1 119718690 4596990 complement(4725713..4726045) 1 NC_008699.1 PFAM: regulatory protein, ArsR; KEGG: tfu:Tfu_0872 regulatory protein, ArsR; ArsR family transcriptional regulator 4726045 4596990 Noca_4471 Nocardioides sp. JS614 ArsR family transcriptional regulator YP_925655.1 4725713 R 196162 CDS YP_925656.1 119718691 4596991 4726167..4728020 1 NC_008699.1 catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP; phosphoenolpyruvate carboxykinase 4728020 4596991 Noca_4472 Nocardioides sp. JS614 phosphoenolpyruvate carboxykinase YP_925656.1 4726167 D 196162 CDS YP_925657.1 119718692 4596992 complement(4728175..4729635) 1 NC_008699.1 PFAM: aldehyde dehydrogenase; KEGG: rpc:RPC_0104 succinate-semialdehyde dehydrogenase (NAD(P)+); succinate semialdehyde dehydrogenase 4729635 4596992 Noca_4473 Nocardioides sp. JS614 succinate semialdehyde dehydrogenase YP_925657.1 4728175 R 196162 CDS YP_925658.1 119718693 4596993 complement(4729658..4730905) 1 NC_008699.1 PFAM: peptidase M24; KEGG: hma:rrnB0212 aminopeptidase; peptidase M24 4730905 4596993 Noca_4474 Nocardioides sp. JS614 peptidase M24 YP_925658.1 4729658 R 196162 CDS YP_925659.1 119718694 4596994 complement(4730905..4731861) 1 NC_008699.1 PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: pae:PA2199 probable dehydrogenase; 6-phosphogluconate dehydrogenase 4731861 4596994 Noca_4475 Nocardioides sp. JS614 6-phosphogluconate dehydrogenase YP_925659.1 4730905 R 196162 CDS YP_925660.1 119718695 4596995 complement(4731861..4732991) 1 NC_008699.1 PFAM: protein of unknown function DUF1100, hydrolase family protein; KEGG: bcn:Bcen_5609 hypothetical protein; hypothetical protein 4732991 4596995 Noca_4476 Nocardioides sp. JS614 hypothetical protein YP_925660.1 4731861 R 196162 CDS YP_925661.1 119718696 4596996 4733127..4734005 1 NC_008699.1 KEGG: pol:Bpro_0362 extracellular solute-binding protein, family 3; extracellular solute-binding protein 4734005 4596996 Noca_4477 Nocardioides sp. JS614 extracellular solute-binding protein YP_925661.1 4733127 D 196162 CDS YP_925662.1 119718697 4596997 4734002..4735198 1 NC_008699.1 PFAM: major facilitator superfamily MFS_1; KEGG: dar:Daro_1096 major facilitator superfamily MFS_1; major facilitator transporter 4735198 4596997 Noca_4478 Nocardioides sp. JS614 major facilitator transporter YP_925662.1 4734002 D 196162 CDS YP_925663.1 119718698 4596998 4735200..4736228 1 NC_008699.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: reu:Reut_B5848 periplasmic binding protein/LacI transcriptional regulator; LacI family transcriptional regulator 4736228 4596998 Noca_4479 Nocardioides sp. JS614 LacI family transcriptional regulator YP_925663.1 4735200 D 196162 CDS YP_925664.1 119718699 4596999 complement(4736350..4737579) 1 NC_008699.1 PFAM: fatty acid desaturase; KEGG: fal:FRAAL6454 linoleoyl-CoA desaturase (delta(6)-desaturase); fatty acid desaturase 4737579 4596999 Noca_4480 Nocardioides sp. JS614 fatty acid desaturase YP_925664.1 4736350 R 196162 CDS YP_925665.1 119718700 4597000 complement(4737601..4738755) 1 NC_008699.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: nfa:nfa46020 putative oxidoreductase; oxidoreductase FAD-binding subunit 4738755 4597000 Noca_4481 Nocardioides sp. JS614 oxidoreductase FAD-binding subunit YP_925665.1 4737601 R 196162 CDS YP_925666.1 119718701 4597001 4738825..4739994 1 NC_008699.1 KEGG: fra:Francci3_3797 hypothetical protein; hypothetical protein 4739994 4597001 Noca_4482 Nocardioides sp. JS614 hypothetical protein YP_925666.1 4738825 D 196162 CDS YP_925667.1 119718702 4597002 complement(4740064..4740849) 1 NC_008699.1 TIGRFAM: glucosamine-6-phosphate isomerase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: rha:RHA1_ro01547 glucosamine-6-phosphate deaminase; glucosamine-6-phosphate isomerase 4740849 4597002 Noca_4483 Nocardioides sp. JS614 glucosamine-6-phosphate isomerase YP_925667.1 4740064 R 196162 CDS YP_925668.1 119718703 4597003 complement(4740849..4741805) 1 NC_008699.1 PFAM: amidohydrolase; KEGG: rxy:Rxyl_0658 N-acetylglucosamine-6-phosphate deacetylase; N-acetylglucosamine 6-phosphate deacetylase 4741805 4597003 Noca_4484 Nocardioides sp. JS614 N-acetylglucosamine 6-phosphate deacetylase YP_925668.1 4740849 R 196162 CDS YP_925669.1 119718704 4597004 complement(4741802..4742719) 1 NC_008699.1 PFAM: ROK family protein; KEGG: blo:BL1341 possible sugar kinase; ROK family protein 4742719 4597004 Noca_4485 Nocardioides sp. JS614 ROK family protein YP_925669.1 4741802 R 196162 CDS YP_925670.1 119718705 4597005 complement(4742716..4744122) 1 NC_008699.1 PFAM: glycoside hydrolase, family 3 domain protein; KEGG: sco:SCO5235 sugar hydrolase; glycoside hydrolase family protein 4744122 4597005 Noca_4486 Nocardioides sp. JS614 glycoside hydrolase family protein YP_925670.1 4742716 R 196162 CDS YP_925671.1 119718706 4597006 complement(4744119..4744304) 1 NC_008699.1 KEGG: sco:SCO0533 putative sugar transporter membrane protein; putative sugar transporter membrane protein 4744304 4597006 Noca_4487 Nocardioides sp. JS614 putative sugar transporter membrane protein YP_925671.1 4744119 R 196162 CDS YP_925672.1 119718707 4597007 complement(4744508..4745632) 1 NC_008699.1 PFAM: ROK family protein; KEGG: blo:BL1342 NagC/XylR-type transciptional regulator; ROK family protein 4745632 4597007 Noca_4488 Nocardioides sp. JS614 ROK family protein YP_925672.1 4744508 R 196162 CDS YP_925673.1 119718708 4597008 complement(4745816..4746712) 1 NC_008699.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: fal:FRAAL3261 putative membrane transport protein (cation efflux); cation diffusion facilitator family transporter 4746712 4597008 Noca_4489 Nocardioides sp. JS614 cation diffusion facilitator family transporter YP_925673.1 4745816 R 196162 CDS YP_925674.1 119718709 4597009 4746809..4747708 1 NC_008699.1 PFAM: lipolytic enzyme, G-D-S-L family; KEGG: sco:SCO7513 secreted hydrolase; GDSL family lipase 4747708 4597009 Noca_4490 Nocardioides sp. JS614 GDSL family lipase YP_925674.1 4746809 D 196162 CDS YP_925675.1 119718710 4597010 complement(4747691..4749217) 1 NC_008699.1 PFAM: Amidohydrolase 3; KEGG: pac:PPA0940 conserved protein, putative metal-dependent hydrolase; amidohydrolase 3 4749217 4597010 Noca_4491 Nocardioides sp. JS614 amidohydrolase 3 YP_925675.1 4747691 R 196162 CDS YP_925676.1 119718711 4597011 complement(4749317..4750780) 1 NC_008699.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bbr:BB2411 putative transmembrane efflux protein; EmrB/QacA family drug resistance transporter 4750780 4597011 Noca_4492 Nocardioides sp. JS614 EmrB/QacA family drug resistance transporter YP_925676.1 4749317 R 196162 CDS YP_925677.1 119718712 4597012 complement(4750871..4752544) 1 NC_008699.1 TIGRFAM: phenylacetic acid degradation protein paaN; PFAM: aldehyde dehydrogenase; KEGG: reu:Reut_B3740 phenylacetic acid degradation protein paaN2; phenylacetic acid degradation protein paaN 4752544 4597012 Noca_4493 Nocardioides sp. JS614 phenylacetic acid degradation protein paaN YP_925677.1 4750871 R 196162 CDS YP_925678.1 119718713 4597013 4752682..4753326 1 NC_008699.1 hypothetical protein 4753326 4597013 Noca_4494 Nocardioides sp. JS614 hypothetical protein YP_925678.1 4752682 D 196162 CDS YP_925679.1 119718714 4597014 4753369..4753941 1 NC_008699.1 PFAM: stress protein; KEGG: rha:RHA1_ro02442 stress related protein; stress protein 4753941 4597014 Noca_4495 Nocardioides sp. JS614 stress protein YP_925679.1 4753369 D 196162 CDS YP_925680.1 119718715 4597015 complement(4754066..4755532) 1 NC_008699.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: tfu:Tfu_0454 tyrosine protein kinase:serine/threonine protein kinase; protein kinase 4755532 4597015 Noca_4496 Nocardioides sp. JS614 protein kinase YP_925680.1 4754066 R 196162 CDS YP_925681.1 119718716 4597016 4755620..4756564 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tfu:Tfu_1436 ABC-type multidrug transport system ATPase component; ABC transporter-like protein 4756564 4597016 Noca_4497 Nocardioides sp. JS614 ABC transporter-like protein YP_925681.1 4755620 D 196162 CDS YP_925682.1 119718717 4597017 4756561..4757379 1 NC_008699.1 KEGG: fal:FRAAL6618 hypothetical protein; hypothetical protein 4757379 4597017 Noca_4498 Nocardioides sp. JS614 hypothetical protein YP_925682.1 4756561 D 196162 CDS YP_925683.1 119718718 4597018 4757441..4758007 1 NC_008699.1 PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: tfu:Tfu_0455 sigma subunit sigma24 -like protein; sigma-70 region 2 domain-containing protein 4758007 4597018 Noca_4499 Nocardioides sp. JS614 sigma-70 region 2 domain-containing protein YP_925683.1 4757441 D 196162 CDS YP_925684.1 119718719 4597019 4758175..4759596 1 NC_008699.1 PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: sma:SAV3952 metallopeptidase; peptidase M1, membrane alanine aminopeptidase 4759596 4597019 Noca_4500 Nocardioides sp. JS614 peptidase M1, membrane alanine aminopeptidase YP_925684.1 4758175 D 196162 CDS YP_925685.1 119718720 4597020 4759656..4760648 1 NC_008699.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: bja:blr6721 putative reductase; NAD-dependent epimerase/dehydratase 4760648 4597020 Noca_4501 Nocardioides sp. JS614 NAD-dependent epimerase/dehydratase YP_925685.1 4759656 D 196162 CDS YP_925686.1 119718721 4597021 4760739..4762232 1 NC_008699.1 PFAM: carboxyl transferase; Enoyl-CoA hydratase/isomerase; KEGG: rha:RHA1_ro02935 acetyl-CoA carboxylase carboxyl transferase subunit; carboxyl transferase 4762232 4597021 Noca_4502 Nocardioides sp. JS614 carboxyl transferase YP_925686.1 4760739 D 196162 CDS YP_925687.1 119718722 4597022 4762375..4763178 1 NC_008699.1 KEGG: rha:RHA1_ro06351 reductase; reductase 4763178 4597022 Noca_4503 Nocardioides sp. JS614 reductase YP_925687.1 4762375 D 196162 CDS YP_925688.1 119718723 4597023 4763206..4764087 1 NC_008699.1 PFAM: Patatin; KEGG: rha:RHA1_ro06546 hypothetical protein; patatin 4764087 4597023 Noca_4504 Nocardioides sp. JS614 patatin YP_925688.1 4763206 D 196162 CDS YP_925689.1 119718724 4597024 complement(4764109..4765080) 1 NC_008699.1 KEGG: nfa:nfa7310 hypothetical protein; hypothetical protein 4765080 4597024 Noca_4505 Nocardioides sp. JS614 hypothetical protein YP_925689.1 4764109 R 196162 CDS YP_925690.1 119718725 4597025 4765096..4766382 1 NC_008699.1 TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: bce:BC2248 acetylornithine deacetylase; acetylornithine deacetylase 4766382 4597025 Noca_4506 Nocardioides sp. JS614 acetylornithine deacetylase YP_925690.1 4765096 D 196162 CDS YP_925691.1 119718726 4597026 complement(4766438..4767862) 1 NC_008699.1 PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: sco:SCO3815 putative dihydrolipoamide acyltransferase component; dehydrogenase catalytic domain-containing protein 4767862 4597026 Noca_4507 Nocardioides sp. JS614 dehydrogenase catalytic domain-containing protein YP_925691.1 4766438 R 196162 CDS YP_925692.1 119718727 4597027 complement(4767874..4768854) 1 NC_008699.1 PFAM: Transketolase, central region; Transketolase domain protein; KEGG: sco:SCO3816 putative branched-chain alpha keto acid dehydrogenase E1 beta subunit; transketolase, central region 4768854 4597027 Noca_4508 Nocardioides sp. JS614 transketolase, central region YP_925692.1 4767874 R 196162 CDS YP_925693.1 119718728 4597028 complement(4768856..4770052) 1 NC_008699.1 PFAM: dehydrogenase, E1 component; KEGG: tfu:Tfu_0180 pyruvate dehydrogenase (lipoamide); pyruvate dehydrogenase 4770052 4597028 Noca_4509 Nocardioides sp. JS614 pyruvate dehydrogenase YP_925693.1 4768856 R 196162 CDS YP_925694.1 119718729 4597029 complement(4770234..4770977) 1 NC_008699.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: sco:SCO6751 putative efflux protein; cation diffusion facilitator family transporter 4770977 4597029 Noca_4510 Nocardioides sp. JS614 cation diffusion facilitator family transporter YP_925694.1 4770234 R 196162 CDS YP_925695.1 119718730 4597030 4771246..4772271 1 NC_008699.1 PFAM: glycoside hydrolase, family 43; KEGG: dge:Dgeo_2723 glycoside hydrolase, family 43; glycoside hydrolase family protein 4772271 4597030 Noca_4511 Nocardioides sp. JS614 glycoside hydrolase family protein YP_925695.1 4771246 D 196162 CDS YP_925696.1 119718731 4597031 complement(4772384..4773358) 1 NC_008699.1 KEGG: rha:RHA1_ro06020 possible glutathione S-transferase; putative glutathione S-transferase 4773358 4597031 Noca_4512 Nocardioides sp. JS614 putative glutathione S-transferase YP_925696.1 4772384 R 196162 CDS YP_925697.1 119718732 4597032 complement(4773409..4774575) 1 NC_008699.1 PFAM: glycoside hydrolase, family 3 domain protein; KEGG: fal:FRAAL0843 putative beta-N-acetylhexosaminidase; glycoside hydrolase family 3 protein 4774575 4597032 Noca_4513 Nocardioides sp. JS614 glycoside hydrolase family 3 protein YP_925697.1 4773409 R 196162 CDS YP_925698.1 119718733 4597033 complement(4774595..4775665) 1 NC_008699.1 TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase, class I and II; KEGG: sma:SAV4261 putative histidinol-phosphate aminotransferase; aminotransferase 4775665 4597033 Noca_4514 Nocardioides sp. JS614 aminotransferase YP_925698.1 4774595 R 196162 CDS YP_925699.1 119718734 4597034 complement(4775675..4776229) 1 NC_008699.1 hypothetical protein 4776229 4597034 Noca_4515 Nocardioides sp. JS614 hypothetical protein YP_925699.1 4775675 R 196162 CDS YP_925700.1 119718735 4597035 4776420..4776827 1 NC_008699.1 PFAM: membrane protein of unknown function; KEGG: sma:SAV4271 hypothetical protein; membrane protein 4776827 4597035 Noca_4516 Nocardioides sp. JS614 membrane protein YP_925700.1 4776420 D 196162 CDS YP_925701.1 119718736 4597036 4776831..4777421 1 NC_008699.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: tfu:Tfu_2341 protein-tyrosine-phosphatase; protein tyrosine phosphatase 4777421 4597036 Noca_4517 Nocardioides sp. JS614 protein tyrosine phosphatase YP_925701.1 4776831 D 196162 CDS YP_925702.1 119718737 4597037 4777418..4778296 1 NC_008699.1 PFAM: aminoglycoside phosphotransferase; fructosamine kinase; KEGG: tfu:Tfu_2340 hypothetical protein; aminoglycoside phosphotransferase 4778296 4597037 Noca_4518 Nocardioides sp. JS614 aminoglycoside phosphotransferase YP_925702.1 4777418 D 196162 CDS YP_925703.1 119718738 4597038 4778373..4779077 1 NC_008699.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: nfa:nfa49640 putative two-component system response regulator; response regulator receiver 4779077 4597038 Noca_4519 Nocardioides sp. JS614 response regulator receiver YP_925703.1 4778373 D 196162 CDS YP_925704.1 119718739 4597039 4779074..4780489 1 NC_008699.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rha:RHA1_ro05623 sensor kinase, two-component system; ATPase domain-containing protein 4780489 4597039 Noca_4520 Nocardioides sp. JS614 ATPase domain-containing protein YP_925704.1 4779074 D 196162 CDS YP_925705.1 119718740 4597040 4780510..4781049 1 NC_008699.1 hypothetical protein 4781049 4597040 Noca_4521 Nocardioides sp. JS614 hypothetical protein YP_925705.1 4780510 D 196162 CDS YP_925706.1 119718741 4597041 4781068..4781922 1 NC_008699.1 KEGG: nfa:nfa5300 hypothetical protein; hypothetical protein 4781922 4597041 Noca_4522 Nocardioides sp. JS614 hypothetical protein YP_925706.1 4781068 D 196162 CDS YP_925707.1 119718742 4597042 4781945..4783186 1 NC_008699.1 TIGRFAM: ornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: mmc:Mmcs_0992 ornithine aminotransferase; aminotransferase 4783186 4597042 Noca_4523 Nocardioides sp. JS614 aminotransferase YP_925707.1 4781945 D 196162 CDS YP_925708.1 119718743 4597043 complement(4783250..4785103) 1 NC_008699.1 KEGG: bps:BPSS1911 hypothetical protein; hypothetical protein 4785103 4597043 Noca_4524 Nocardioides sp. JS614 hypothetical protein YP_925708.1 4783250 R 196162 CDS YP_925709.1 119718744 4597044 complement(4785581..4786810) 1 NC_008699.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: chy:CHY_2508 ISChy2, transposase; transposase IS116/IS110/IS902 family protein 4786810 4597044 Noca_4525 Nocardioides sp. JS614 transposase IS116/IS110/IS902 family protein YP_925709.1 4785581 R 196162 CDS YP_925710.1 119718745 4597045 complement(4786945..4788393) 1 NC_008699.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 4788393 4597045 Noca_4526 Nocardioides sp. JS614 glucose-6-phosphate 1-dehydrogenase YP_925710.1 4786945 R 196162 CDS YP_925711.1 119718746 4597046 complement(4788425..4789738) 1 NC_008699.1 PFAM: Anthranilate synthase component I and chorismate binding protein; KEGG: nfa:nfa16010 putative para-aminobenzoate synthase; anthranilate synthase component I/chorismate-binding protein 4789738 4597046 Noca_4527 Nocardioides sp. JS614 anthranilate synthase component I/chorismate-binding protein YP_925711.1 4788425 R 196162 CDS YP_925712.1 119718747 4597047 complement(4789735..4790298) 1 NC_008699.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: cgb:cg1134 para-aminobenzoate synthase component I and II; anthranilate synthase, component II 4790298 4597047 Noca_4528 Nocardioides sp. JS614 anthranilate synthase, component II YP_925712.1 4789735 R 196162 CDS YP_925713.1 119718748 4597048 complement(4790398..4792398) 1 NC_008699.1 PFAM: glutamine amidotransferase class-I; Anthranilate synthase component I and chorismate binding protein; KEGG: sco:SCO2117 anthranilate synthase; anthranilate synthase component I/chorismate-binding protein 4792398 4597048 Noca_4529 Nocardioides sp. JS614 anthranilate synthase component I/chorismate-binding protein YP_925713.1 4790398 R 196162 CDS YP_925714.1 119718749 4597049 complement(4792622..4793074) 1 NC_008699.1 hypothetical protein 4793074 4597049 Noca_4530 Nocardioides sp. JS614 hypothetical protein YP_925714.1 4792622 R 196162 CDS YP_925715.1 119718750 4597050 complement(4793196..4795376) 1 NC_008699.1 KEGG: pac:PPA0733 putative helicase protein; putative helicase protein 4795376 4597050 Noca_4531 Nocardioides sp. JS614 putative helicase protein YP_925715.1 4793196 R 196162 CDS YP_925716.1 119718751 4597051 complement(4795615..4796382) 1 NC_008699.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: nfa:nfa53270 putative enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase 4796382 4597051 Noca_4532 Nocardioides sp. JS614 enoyl-CoA hydratase YP_925716.1 4795615 R 196162 CDS YP_925717.1 119718752 4597052 4796436..4797962 1 NC_008699.1 PFAM: oxidoreductase, molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: sco:SCO0555 membrane-bound oxidoreductase; oxidoreductase 4797962 4597052 Noca_4533 Nocardioides sp. JS614 oxidoreductase YP_925717.1 4796436 D 196162 CDS YP_925718.1 119718753 4597053 4798145..4798798 1 NC_008699.1 PFAM: beta-Ig-H3/fasciclin; KEGG: sco:SCO0638 lipoprotein; beta-Ig-H3/fasciclin 4798798 4597053 Noca_4534 Nocardioides sp. JS614 beta-Ig-H3/fasciclin YP_925718.1 4798145 D 196162 CDS YP_925719.1 119718754 4597054 4798838..4799440 1 NC_008699.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in M. bovis this protein has been shown to be involved in expression of antigenic proteins; RNA polymerase sigma factor SigK 4799440 4597054 Noca_4535 Nocardioides sp. JS614 RNA polymerase sigma factor SigK YP_925719.1 4798838 D 196162 CDS YP_925720.1 119718755 4597055 4799437..4800189 1 NC_008699.1 KEGG: sco:SCO0633 hypothetical protein; hypothetical protein 4800189 4597055 Noca_4536 Nocardioides sp. JS614 hypothetical protein YP_925720.1 4799437 D 196162 CDS YP_925721.1 119718756 4597056 4800186..4802189 1 NC_008699.1 PFAM: amine oxidase; FAD dependent oxidoreductase; protein of unknown function DUF1365; KEGG: rha:RHA1_ro02557 possible amine oxidase; hypothetical protein 4802189 4597056 Noca_4537 Nocardioides sp. JS614 hypothetical protein YP_925721.1 4800186 D 196162 CDS YP_925722.1 119718757 4597057 4802186..4803433 1 NC_008699.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rha:RHA1_ro02559 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 4803433 4597057 Noca_4538 Nocardioides sp. JS614 cyclopropane-fatty-acyl-phospholipid synthase YP_925722.1 4802186 D 196162 CDS YP_925723.1 119718758 4597058 4803430..4804212 1 NC_008699.1 PFAM: protein of unknown function DUF1295; KEGG: rha:RHA1_ro02561 possible membrane protein; hypothetical protein 4804212 4597058 Noca_4539 Nocardioides sp. JS614 hypothetical protein YP_925723.1 4803430 D 196162 CDS YP_925724.1 119718759 4597059 complement(4804216..4804632) 1 NC_008699.1 KEGG: nfa:nfa26690 hypothetical protein; hypothetical protein 4804632 4597059 Noca_4540 Nocardioides sp. JS614 hypothetical protein YP_925724.1 4804216 R 196162 CDS YP_925725.1 119718760 4597060 4804671..4805237 1 NC_008699.1 PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: mka:MK0282 protein-L-isoaspartate carboxylmethyltransferase; protein-L-isoaspartate(D-aspartate) O-methyltransferase 4805237 4597060 Noca_4541 Nocardioides sp. JS614 protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_925725.1 4804671 D 196162 CDS YP_925726.1 119718761 4597061 4805251..4806048 1 NC_008699.1 KEGG: rha:RHA1_ro01881 possible tyrosine protein phosphatase; putative tyrosine protein phosphatase 4806048 4597061 Noca_4542 Nocardioides sp. JS614 putative tyrosine protein phosphatase YP_925726.1 4805251 D 196162 CDS YP_925727.1 119718762 4597062 4806195..4806605 1 NC_008699.1 KEGG: mpa:MAP3880 hypothetical protein; hypothetical protein 4806605 4597062 Noca_4543 Nocardioides sp. JS614 hypothetical protein YP_925727.1 4806195 D 196162 CDS YP_925728.1 119718763 4597063 complement(4806562..4807629) 1 NC_008699.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: hne:HNE_0194 NADH:flavin oxidoreductase/NADH oxidase family protein; NADH:flavin oxidoreductase 4807629 4597063 Noca_4544 Nocardioides sp. JS614 NADH:flavin oxidoreductase YP_925728.1 4806562 R 196162 CDS YP_925729.1 119718764 4597064 complement(4807806..4808375) 1 NC_008699.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sco:SCO2876 acetyltransferase; N-acetyltransferase GCN5 4808375 4597064 Noca_4545 Nocardioides sp. JS614 N-acetyltransferase GCN5 YP_925729.1 4807806 R 196162 CDS YP_925730.1 119718765 4597065 4808462..4810078 1 NC_008699.1 hypothetical protein 4810078 4597065 Noca_4546 Nocardioides sp. JS614 hypothetical protein YP_925730.1 4808462 D 196162 CDS YP_925731.1 119718766 4597066 complement(4810090..4810854) 1 NC_008699.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: fal:FRAAL5043 putative methyltransferase (partial match); type 11 methyltransferase 4810854 4597066 Noca_4547 Nocardioides sp. JS614 type 11 methyltransferase YP_925731.1 4810090 R 196162 CDS YP_925732.1 119718767 4597067 complement(4810871..4811920) 1 NC_008699.1 PFAM: ribonuclease BN; KEGG: mpa:MAP1682c hypothetical protein; ribonuclease BN 4811920 4597067 Noca_4548 Nocardioides sp. JS614 ribonuclease BN YP_925732.1 4810871 R 196162 CDS YP_925733.1 119718768 4597068 complement(4811925..4813184) 1 NC_008699.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 4813184 4597068 Noca_4549 Nocardioides sp. JS614 DNA polymerase IV YP_925733.1 4811925 R 196162 CDS YP_925734.1 119718769 4597069 complement(4813306..4814466) 1 NC_008699.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: mpa:MAP0910c acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 4814466 4597069 Noca_4550 Nocardioides sp. JS614 acyl-CoA dehydrogenase domain-containing protein YP_925734.1 4813306 R 196162 CDS YP_925735.1 119718770 4597070 complement(4814463..4816364) 1 NC_008699.1 PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: nfa:nfa53290 putative acetyl/propionyl-CoA carboxylase alpha subunit; carbamoyl-phosphate synthase subunit L 4816364 4597070 Noca_4551 Nocardioides sp. JS614 carbamoyl-phosphate synthase subunit L YP_925735.1 4814463 R 196162 CDS YP_925736.1 119718771 4597071 complement(4816537..4818141) 1 NC_008699.1 PFAM: carboxyl transferase; KEGG: rha:RHA1_ro01931 probable methylcrotonoyl-CoA carboxylase, beta chain; propionyl-CoA carboxylase 4818141 4597071 Noca_4552 Nocardioides sp. JS614 propionyl-CoA carboxylase YP_925736.1 4816537 R 196162 CDS YP_925737.1 119718772 4597072 complement(4818138..4818623) 1 NC_008699.1 PFAM: cyclase/dehydrase; Activator of Hsp90 ATPase 1 family protein; KEGG: mpa:MAP1606c hypothetical protein; activator of Hsp90 ATPase 1 family protein 4818623 4597072 Noca_4553 Nocardioides sp. JS614 activator of Hsp90 ATPase 1 family protein YP_925737.1 4818138 R 196162 CDS YP_925738.1 119718773 4597073 complement(4818620..4819780) 1 NC_008699.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: nfa:nfa53310 putative acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 4819780 4597073 Noca_4554 Nocardioides sp. JS614 acyl-CoA dehydrogenase domain-containing protein YP_925738.1 4818620 R 196162 CDS YP_925739.1 119718774 4597074 complement(4819777..4821531) 1 NC_008699.1 PFAM: protein of unknown function DUF1446; KEGG: nfa:nfa53320 hypothetical protein; hypothetical protein 4821531 4597074 Noca_4555 Nocardioides sp. JS614 hypothetical protein YP_925739.1 4819777 R 196162 CDS YP_925740.1 119718775 4597075 complement(4821524..4822324) 1 NC_008699.1 KEGG: mmc:Mmcs_5394 hypothetical protein; hypothetical protein 4822324 4597075 Noca_4556 Nocardioides sp. JS614 hypothetical protein YP_925740.1 4821524 R 196162 CDS YP_925741.1 119718776 4597076 complement(4822321..4822920) 1 NC_008699.1 PFAM: regulatory protein, TetR; KEGG: sma:SAV3862 TetR-family transcriptional regulator; TetR family transcriptional regulator 4822920 4597076 Noca_4557 Nocardioides sp. JS614 TetR family transcriptional regulator YP_925741.1 4822321 R 196162 CDS YP_925742.1 119718777 4597077 4823098..4823916 1 NC_008699.1 PFAM: RDD domain containing protein; KEGG: mpa:MAP1025 Pra; RDD domain-containing protein 4823916 4597077 Noca_4558 Nocardioides sp. JS614 RDD domain-containing protein YP_925742.1 4823098 D 196162 CDS YP_925743.1 119718778 4597078 4823923..4825188 1 NC_008699.1 PFAM: alpha/beta hydrolase fold; KEGG: sco:SCO0805 prolyl aminopeptidase; prolyl aminopeptidase 2 4825188 4597078 Noca_4559 Nocardioides sp. JS614 prolyl aminopeptidase 2 YP_925743.1 4823923 D 196162 CDS YP_925744.1 119718779 4597079 complement(4825431..4826102) 1 NC_008699.1 PFAM: Phosphoglycerate mutase; KEGG: mxa:MXAN_5898 hypothetical protein; phosphoglycerate mutase 4826102 4597079 Noca_4560 Nocardioides sp. JS614 phosphoglycerate mutase YP_925744.1 4825431 R 196162 CDS YP_925745.1 119718780 4597080 complement(4826186..4827865) 1 NC_008699.1 PFAM: formate-tetrahydrofolate ligase, FTHFS; KEGG: gbe:GbCGDNIH1_0047 formate--tetrahydrofolate ligase; formate-tetrahydrofolate ligase 4827865 4597080 Noca_4561 Nocardioides sp. JS614 formate-tetrahydrofolate ligase YP_925745.1 4826186 R 196162 CDS YP_925746.1 119718781 4597081 complement(4828113..4830323) 1 NC_008699.1 PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: mpa:MAP0790 enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase; short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase 4830323 4597081 Noca_4562 Nocardioides sp. JS614 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase YP_925746.1 4828113 R 196162 CDS YP_925747.1 119718782 4597082 complement(4830422..4831633) 1 NC_008699.1 KEGG: sco:SCO6731 acetyl-CoA acyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; acetyl-CoA acetyltransferase 4831633 4597082 Noca_4563 Nocardioides sp. JS614 acetyl-CoA acetyltransferase YP_925747.1 4830422 R 196162 CDS YP_925748.1 119718783 4597084 4832475..4833371 1 NC_008699.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; KEGG: nfa:nfa11930 hypothetical protein; NAD-dependent epimerase/dehydratase 4833371 4597084 Noca_4565 Nocardioides sp. JS614 NAD-dependent epimerase/dehydratase YP_925748.1 4832475 D 196162 CDS YP_925749.1 119718784 4598664 complement(4833517..4834218) 1 NC_008699.1 PFAM: Abortive infection protein; KEGG: mpa:MAP2640c hypothetical protein; abortive infection protein 4834218 4598664 Noca_4566 Nocardioides sp. JS614 abortive infection protein YP_925749.1 4833517 R 196162 CDS YP_925750.1 119718785 4598665 complement(4834292..4835815) 1 NC_008699.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: lxx:Lxx20780 ATP-dependent RNA helicase; DEAD/DEAH box helicase domain-containing protein 4835815 4598665 Noca_4567 Nocardioides sp. JS614 DEAD/DEAH box helicase domain-containing protein YP_925750.1 4834292 R 196162 CDS YP_925751.1 119718786 4598666 complement(4835999..4836193) 1 NC_008699.1 PFAM: CsbD family protein; KEGG: rha:RHA1_ro04155 hypothetical protein; CsbD family protein 4836193 4598666 Noca_4568 Nocardioides sp. JS614 CsbD family protein YP_925751.1 4835999 R 196162 CDS YP_925752.1 119718787 4598667 complement(4836251..4837690) 1 NC_008699.1 PFAM: FAD dependent oxidoreductase; KEGG: rha:RHA1_ro02919 flavin binding monooxygenase; FAD dependent oxidoreductase 4837690 4598667 Noca_4569 Nocardioides sp. JS614 FAD dependent oxidoreductase YP_925752.1 4836251 R 196162 CDS YP_925753.1 119718788 4598668 complement(4837729..4838460) 1 NC_008699.1 Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; glutamine amidotransferase 4838460 4598668 Noca_4570 Nocardioides sp. JS614 glutamine amidotransferase YP_925753.1 4837729 R 196162 CDS YP_925754.1 119718789 4598669 complement(4838469..4839626) 1 NC_008699.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: sma:SAV1682 fatty acid-CoA racemase; L-carnitine dehydratase/bile acid-inducible protein F 4839626 4598669 Noca_4571 Nocardioides sp. JS614 L-carnitine dehydratase/bile acid-inducible protein F YP_925754.1 4838469 R 196162 CDS YP_925755.1 119718790 4598671 complement(4840818..4841555) 1 NC_008699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV6281 putative ABC transporter ATP-binding protein - glutamine transport; ABC transporter-like protein 4841555 4598671 Noca_4573 Nocardioides sp. JS614 ABC transporter-like protein YP_925755.1 4840818 R 196162 CDS YP_925756.1 119718791 4598672 complement(4841552..4842277) 1 NC_008699.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV6282 putative glutamine ABC transporter permease protein; polar amino acid ABC transporter inner membrane subunit 4842277 4598672 Noca_4574 Nocardioides sp. JS614 polar amino acid ABC transporter inner membrane subunit YP_925756.1 4841552 R 196162 CDS YP_925757.1 119718792 4598673 complement(4842400..4843293) 1 NC_008699.1 PFAM: extracellular solute-binding protein, family 3; KEGG: sma:SAV6283 putative amino acid ABC transporter, periplasmic amino acid-binding protein; extracellular solute-binding protein 4843293 4598673 Noca_4575 Nocardioides sp. JS614 extracellular solute-binding protein YP_925757.1 4842400 R 196162 CDS YP_925758.1 119718793 4598674 4843418..4843963 1 NC_008699.1 PFAM: transcriptional regulator PadR family protein; KEGG: nfa:nfa12910 putative transcriptional regulator; PadR family transcriptional regulator 4843963 4598674 Noca_4576 Nocardioides sp. JS614 PadR family transcriptional regulator YP_925758.1 4843418 D 196162 CDS YP_925759.1 119718794 4598675 4843960..4845966 1 NC_008699.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rha:RHA1_ro01415 2,4-dienoyl-CoA reductase (NADPH); 2,4-dienoyl-CoA reductase 4845966 4598675 Noca_4577 Nocardioides sp. JS614 2,4-dienoyl-CoA reductase YP_925759.1 4843960 D 196162 CDS YP_925760.1 119718795 4598676 4845978..4847138 1 NC_008699.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase, class I and II; KEGG: rha:RHA1_ro08885 probable aminotransferase; class I and II aminotransferase 4847138 4598676 Noca_4578 Nocardioides sp. JS614 class I and II aminotransferase YP_925760.1 4845978 D 196162 CDS YP_925761.1 119718796 4598677 4847231..4848553 1 NC_008699.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: sma:SAV5025 putative UDP-glucose 6-dehydrogenase; UDP-glucose 6-dehydrogenase 4848553 4598677 Noca_4579 Nocardioides sp. JS614 UDP-glucose 6-dehydrogenase YP_925761.1 4847231 D 196162 CDS YP_925762.1 119718797 4598678 complement(4848664..4849953) 1 NC_008699.1 KEGG: cac:CAC1615 predicted glycosyltransferase; hypothetical protein 4849953 4598678 Noca_4580 Nocardioides sp. JS614 hypothetical protein YP_925762.1 4848664 R 196162 CDS YP_925763.1 119718798 4598679 complement(4849971..4850900) 1 NC_008699.1 KEGG: rxy:Rxyl_3098 hypothetical protein; hypothetical protein 4850900 4598679 Noca_4581 Nocardioides sp. JS614 hypothetical protein YP_925763.1 4849971 R 196162 CDS YP_925764.1 119718799 4598680 complement(4850905..4851993) 1 NC_008699.1 KEGG: rxy:Rxyl_3097 hypothetical protein; hypothetical protein 4851993 4598680 Noca_4582 Nocardioides sp. JS614 hypothetical protein YP_925764.1 4850905 R 196162 CDS YP_925765.1 119718800 4598681 complement(4852004..4853647) 1 NC_008699.1 PFAM: glycosyl transferase, family 2; KEGG: tfu:Tfu_1639 similar to glycosyltransferase; glycosyl transferase family protein 4853647 4598681 Noca_4583 Nocardioides sp. JS614 glycosyl transferase family protein YP_925765.1 4852004 R 196162 CDS YP_925766.1 119718801 4598682 complement(4853655..4855295) 1 NC_008699.1 PFAM: glycosyl transferase, family 2; KEGG: dsy:DSY3936 hypothetical protein; glycosyl transferase family protein 4855295 4598682 Noca_4584 Nocardioides sp. JS614 glycosyl transferase family protein YP_925766.1 4853655 R 196162 CDS YP_925767.1 119718802 4598683 complement(4855295..4856287) 1 NC_008699.1 KEGG: mes:Meso_0486 hypothetical protein; hypothetical protein 4856287 4598683 Noca_4585 Nocardioides sp. JS614 hypothetical protein YP_925767.1 4855295 R 196162 CDS YP_925768.1 119718803 4598684 4856342..4856965 1 NC_008699.1 hypothetical protein 4856965 4598684 Noca_4586 Nocardioides sp. JS614 hypothetical protein YP_925768.1 4856342 D 196162 CDS YP_925769.1 119718804 4598685 complement(4856993..4858390) 1 NC_008699.1 PFAM: glycoside hydrolase, family 1; KEGG: sma:SAV5598 putative beta-glucosidase; beta-glucosidase 4858390 4598685 Noca_4587 Nocardioides sp. JS614 beta-glucosidase YP_925769.1 4856993 R 196162 CDS YP_925770.1 119718805 4598686 complement(4858495..4859199) 1 NC_008699.1 KEGG: lma:LmjF35.0540 proteophosphoglycan 5; hypothetical protein 4859199 4598686 Noca_4588 Nocardioides sp. JS614 hypothetical protein YP_925770.1 4858495 R 196162 CDS YP_925771.1 119718806 4598687 complement(4859177..4860100) 1 NC_008699.1 PFAM: diacylglycerol kinase, catalytic region; KEGG: sco:SCO0667 secreted protein; diacylglycerol kinase catalytic subunit 4860100 4598687 Noca_4589 Nocardioides sp. JS614 diacylglycerol kinase catalytic subunit YP_925771.1 4859177 R 196162 CDS YP_925772.1 119718807 4598688 complement(4860097..4861653) 1 NC_008699.1 PFAM: FAD linked oxidase domain protein; KEGG: sco:SCO0668 putative flavoprotein; FAD linked oxidase domain-containing protein 4861653 4598688 Noca_4590 Nocardioides sp. JS614 FAD linked oxidase domain-containing protein YP_925772.1 4860097 R 196162 CDS YP_925773.1 119718808 4598689 4861692..4862294 1 NC_008699.1 PFAM: regulatory protein, TetR; KEGG: sco:SCO0669 TetR-family transcriptional regulator; regulatory protein TetR 4862294 4598689 Noca_4591 Nocardioides sp. JS614 regulatory protein TetR YP_925773.1 4861692 D 196162 CDS YP_925774.1 119718809 4598690 4862291..4863862 1 NC_008699.1 PFAM: FAD dependent oxidoreductase; KEGG: sco:SCO0670 glycerol-3-phosphate dehydrogenase; FAD dependent oxidoreductase 4863862 4598690 Noca_4592 Nocardioides sp. JS614 FAD dependent oxidoreductase YP_925774.1 4862291 D 196162 CDS YP_925775.1 119718810 4598691 4863925..4865022 1 NC_008699.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; RNA polymerase factor sigma-70 4865022 4598691 Noca_4593 Nocardioides sp. JS614 RNA polymerase factor sigma-70 YP_925775.1 4863925 D 196162 CDS YP_925776.1 119718811 4598692 4865024..4865587 1 NC_008699.1 KEGG: fal:FRAAL4123 hypothetical protein; hypothetical protein 4865587 4598692 Noca_4594 Nocardioides sp. JS614 hypothetical protein YP_925776.1 4865024 D 196162 CDS YP_925777.1 119718812 4598693 4865657..4866667 1 NC_008699.1 PFAM: regulatory protein, LuxR; KEGG: sco:SCO4263 transcriptional regulatory protein; regulatory protein LuxR 4866667 4598693 Noca_4595 Nocardioides sp. JS614 regulatory protein LuxR YP_925777.1 4865657 D 196162 CDS YP_925778.1 119718813 4598694 complement(4866788..4867612) 1 NC_008699.1 KEGG: sil:SPO0916 hypothetical protein; hypothetical protein 4867612 4598694 Noca_4596 Nocardioides sp. JS614 hypothetical protein YP_925778.1 4866788 R 196162 CDS YP_925779.1 119718814 4598695 4867848..4868813 1 NC_008699.1 hypothetical protein 4868813 4598695 Noca_4597 Nocardioides sp. JS614 hypothetical protein YP_925779.1 4867848 D 196162 CDS YP_925780.1 119718815 4598696 complement(4868868..4870325) 1 NC_008699.1 PFAM: aldehyde dehydrogenase; KEGG: rha:RHA1_ro02683 succinate-semialdehyde dehydrogenase (NAD(P)+); succinate semialdehyde dehydrogenase 4870325 4598696 Noca_4598 Nocardioides sp. JS614 succinate semialdehyde dehydrogenase YP_925780.1 4868868 R 196162 CDS YP_925781.1 119718816 4598697 4870833..4872938 1 NC_008699.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 4872938 4598697 Noca_4599 Nocardioides sp. JS614 elongation factor G YP_925781.1 4870833 D 196162 CDS YP_925782.1 119718817 4598698 complement(4873046..4874965) 1 NC_008699.1 PFAM: penicillin-binding protein, transpeptidase; KEGG: mxa:MXAN_7139 putative penicillin-binding protein; penicillin-binding protein, transpeptidase 4874965 4598698 Noca_4600 Nocardioides sp. JS614 penicillin-binding protein, transpeptidase YP_925782.1 4873046 R 196162 CDS YP_925783.1 119718818 4598699 complement(4875022..4876791) 1 NC_008699.1 PFAM: helicase domain protein; DbpA, RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: lxx:Lxx13450 ATP-dependent RNA helicase; DEAD/DEAH box helicase 4876791 4598699 Noca_4601 Nocardioides sp. JS614 DEAD/DEAH box helicase YP_925783.1 4875022 R 196162 CDS YP_925784.1 119718819 4598700 complement(4876868..4878700) 1 NC_008699.1 TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase, class-II; sugar isomerase (SIS); KEGG: sco:SCO2789 glucosamine-fructose-6-phosphate aminotransferase; glutamine--fructose-6-phosphate transaminase 4878700 4598700 Noca_4602 Nocardioides sp. JS614 glutamine--fructose-6-phosphate transaminase YP_925784.1 4876868 R 196162 CDS YP_925785.1 119718820 4598701 complement(4878811..4879098) 1 NC_008699.1 KEGG: sco:SCO2788 hypothetical protein; hypothetical protein 4879098 4598701 Noca_4603 Nocardioides sp. JS614 hypothetical protein YP_925785.1 4878811 R 196162 CDS YP_925786.1 119718821 4598702 4879215..4879487 1 NC_008699.1 hypothetical protein 4879487 4598702 Noca_4604 Nocardioides sp. JS614 hypothetical protein YP_925786.1 4879215 D 196162 CDS YP_925787.1 119718822 4598703 4879668..4880258 1 NC_008699.1 PFAM: YceI family protein; KEGG: sco:SCO5533 hypothetical protein; hypothetical protein 4880258 4598703 Noca_4605 Nocardioides sp. JS614 hypothetical protein YP_925787.1 4879668 D 196162 CDS YP_925788.1 119718823 4598704 4880364..4881290 1 NC_008699.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sco:SCO4151 acetyltransferase; N-acetyltransferase GCN5 4881290 4598704 Noca_4606 Nocardioides sp. JS614 N-acetyltransferase GCN5 YP_925788.1 4880364 D 196162 CDS YP_925789.1 119718824 4596063 complement(4881303..4882529) 1 NC_008699.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: sco:SCO1209 putative acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 4882529 4596063 Noca_4607 Nocardioides sp. JS614 acyl-CoA dehydrogenase domain-containing protein YP_925789.1 4881303 R 196162 CDS YP_925790.1 119718825 4596064 complement(4882600..4884243) 1 NC_008699.1 PFAM: Na+/solute symporter; KEGG: sma:SAV3025 putative proline permease; Na+/solute symporter 4884243 4596064 Noca_4608 Nocardioides sp. JS614 Na+/solute symporter YP_925790.1 4882600 R 196162 CDS YP_925791.1 119718826 4596065 complement(4884240..4884551) 1 NC_008699.1 KEGG: sma:SAV3024 hypothetical protein; hypothetical protein 4884551 4596065 Noca_4609 Nocardioides sp. JS614 hypothetical protein YP_925791.1 4884240 R 196162 CDS YP_925792.1 119718827 4596066 complement(4884767..4885870) 1 NC_008699.1 hypothetical protein 4885870 4596066 Noca_4610 Nocardioides sp. JS614 hypothetical protein YP_925792.1 4884767 R 196162 CDS YP_925793.1 119718828 4596067 complement(4886029..4886487) 1 NC_008699.1 PFAM: protein of unknown function DUF1707; KEGG: tfu:Tfu_2623 hypothetical protein; hypothetical protein 4886487 4596067 Noca_4611 Nocardioides sp. JS614 hypothetical protein YP_925793.1 4886029 R 196162 CDS YP_925794.1 119718829 4596068 complement(4886484..4887188) 1 NC_008699.1 PFAM: transcriptional regulator PadR family protein; KEGG: nfa:nfa36110 putative transcriptional regulator; PadR family transcriptional regulator 4887188 4596068 Noca_4612 Nocardioides sp. JS614 PadR family transcriptional regulator YP_925794.1 4886484 R 196162 CDS YP_925795.1 119718830 4596069 complement(4887395..4889320) 1 NC_008699.1 PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: ade:Adeh_0397 thimet oligopeptidase; thimet oligopeptidase 4889320 4596069 Noca_4613 Nocardioides sp. JS614 thimet oligopeptidase YP_925795.1 4887395 R 196162 CDS YP_925796.1 119718831 4596070 complement(4889383..4890624) 1 NC_008699.1 PFAM: sigma-70 region 2 domain protein; Tetratricopeptide TPR_2 repeat protein; Sigma-70, region 4 type 2; KEGG: sma:SAV1195 putative RNA polymerase ECF-subfamily sigma factor; sigma-70 region 2 domain-containing protein 4890624 4596070 Noca_4614 Nocardioides sp. JS614 sigma-70 region 2 domain-containing protein YP_925796.1 4889383 R 196162 CDS YP_925797.1 119718832 4596071 4890818..4891201 1 NC_008699.1 KEGG: sco:SCO4674 hypothetical protein; hypothetical protein 4891201 4596071 Noca_4615 Nocardioides sp. JS614 hypothetical protein YP_925797.1 4890818 D 196162 CDS YP_925798.1 119718833 4596072 4891198..4891812 1 NC_008699.1 KEGG: mmc:Mmcs_1143 hypothetical protein; hypothetical protein 4891812 4596072 Noca_4616 Nocardioides sp. JS614 hypothetical protein YP_925798.1 4891198 D 196162 CDS YP_925799.1 119718834 4596073 4891817..4892842 1 NC_008699.1 PFAM: glycoside hydrolase, family 6; KEGG: mtu:Rv0062 cellulase / endoglucanase; cellulase 4892842 4596073 Noca_4617 Nocardioides sp. JS614 cellulase YP_925799.1 4891817 D 196162 CDS YP_925800.1 119718835 4596074 4892852..4894132 1 NC_008699.1 PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro04995 probable multidrug resistance transporter, MFS superfamily; major facilitator transporter 4894132 4596074 Noca_4618 Nocardioides sp. JS614 major facilitator transporter YP_925800.1 4892852 D 196162 CDS YP_925801.1 119718836 4596075 complement(4894151..4894657) 1 NC_008699.1 KEGG: mpa:MAP3942 hypothetical protein; hypothetical protein 4894657 4596075 Noca_4619 Nocardioides sp. JS614 hypothetical protein YP_925801.1 4894151 R 196162 CDS YP_925802.1 119718837 4596076 complement(4894755..4897895) 1 NC_008699.1 PFAM: RelA/SpoT domain protein; KEGG: rha:RHA1_ro05719 cytochrome P450 CYP130; RelA/SpoT domain-containing protein 4897895 4596076 Noca_4620 Nocardioides sp. JS614 RelA/SpoT domain-containing protein YP_925802.1 4894755 R 196162 CDS YP_925803.1 119718838 4596077 complement(4898560..4899483) 1 NC_008699.1 PFAM: Indigoidine synthase A family protein; KEGG: dge:Dgeo_0357 indigoidine synthase A like protein; indigoidine synthase A family protein 4899483 4596077 Noca_4621 Nocardioides sp. JS614 indigoidine synthase A family protein YP_925803.1 4898560 R 196162 CDS YP_925804.1 119718839 4596078 complement(4899480..4900589) 1 NC_008699.1 PFAM: PfkB domain protein; Helix-turn-helix, type 11 domain protein; KEGG: dge:Dgeo_0358 PfkB; ribokinase-like domain-containing protein 4900589 4596078 Noca_4622 Nocardioides sp. JS614 ribokinase-like domain-containing protein YP_925804.1 4899480 R 196162 CDS YP_925805.1 119718840 4596079 complement(4900595..4901878) 1 NC_008699.1 PFAM: YibE/F family protein; KEGG: rha:RHA1_ro05459 hypothetical protein; hypothetical protein 4901878 4596079 Noca_4623 Nocardioides sp. JS614 hypothetical protein YP_925805.1 4900595 R 196162 CDS YP_925806.1 119718841 4596080 4901971..4902612 1 NC_008699.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: nfa:nfa34180 putative translocator; lysine exporter protein LysE/YggA 4902612 4596080 Noca_4624 Nocardioides sp. JS614 lysine exporter protein LysE/YggA YP_925806.1 4901971 D 196162 CDS YP_925807.1 119718842 4596081 complement(4902619..4904226) 1 NC_008699.1 PFAM: purine catabolism PurC domain protein; KEGG: rha:RHA1_ro04467 possible transcriptional regulator; CdaR family transcriptional regulator 4904226 4596081 Noca_4625 Nocardioides sp. JS614 CdaR family transcriptional regulator YP_925807.1 4902619 R 196162 CDS YP_925808.1 119718843 4596082 4904236..4905732 1 NC_008699.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: mmc:Mmcs_0348 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 4905732 4596082 Noca_4626 Nocardioides sp. JS614 methylmalonate-semialdehyde dehydrogenase YP_925808.1 4904236 D 196162 CDS YP_925809.1 119718844 4596083 4905748..4907055 1 NC_008699.1 PFAM: aminotransferase class-III; KEGG: mmc:Mmcs_0347 aminotransferase class-III; hypothetical protein 4907055 4596083 Noca_4627 Nocardioides sp. JS614 hypothetical protein YP_925809.1 4905748 D 196162 CDS YP_925810.1 119718845 4596084 4907042..4908475 1 NC_008699.1 PFAM: FAD dependent oxidoreductase; KEGG: rha:RHA1_ro05390 hypothetical protein; FAD dependent oxidoreductase 4908475 4596084 Noca_4628 Nocardioides sp. JS614 FAD dependent oxidoreductase YP_925810.1 4907042 D 196162 CDS YP_925811.1 119718846 4596085 complement(4908497..4909264) 1 NC_008699.1 hypothetical protein 4909264 4596085 Noca_4629 Nocardioides sp. JS614 hypothetical protein YP_925811.1 4908497 R 196162 CDS YP_925812.1 119718847 4596086 complement(4909269..4911503) 1 NC_008699.1 PFAM: glycoside hydrolase, family 31; KEGG: lmo:lmo0182 hypothetical protein; glycoside hydrolase family protein 4911503 4596086 Noca_4630 Nocardioides sp. JS614 glycoside hydrolase family protein YP_925812.1 4909269 R 196162 CDS YP_925813.1 119718848 4596087 complement(4911500..4912660) 1 NC_008699.1 PFAM: glycoside hydrolase 15-related; KEGG: xac:XAC4082 hypothetical protein; glycoside hydrolase 15-like protein 4912660 4596087 Noca_4631 Nocardioides sp. JS614 glycoside hydrolase 15-like protein YP_925813.1 4911500 R 196162 CDS YP_925814.1 119718849 4596088 complement(4912744..4914003) 1 NC_008699.1 PFAM: extracellular solute-binding protein, family 1; KEGG: lmo:lmo0181 similar to sugar ABC transporter, sugar-binding protein; extracellular solute-binding protein 4914003 4596088 Noca_4632 Nocardioides sp. JS614 extracellular solute-binding protein YP_925814.1 4912744 R 196162 CDS YP_925815.1 119718850 4596089 complement(4914068..4914895) 1 NC_008699.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lmf:LMOf2365_0191 sugar ABC transporter, permease protein; binding-protein-dependent transport systems inner membrane component 4914895 4596089 Noca_4633 Nocardioides sp. JS614 binding-protein-dependent transport systems inner membrane component YP_925815.1 4914068 R 196162 CDS YP_925816.1 119718851 4596090 complement(4914888..4915766) 1 NC_008699.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lin:lin0218 similar to sugar ABC transporters, permease proteins; binding-protein-dependent transport systems inner membrane component 4915766 4596090 Noca_4634 Nocardioides sp. JS614 binding-protein-dependent transport systems inner membrane component YP_925816.1 4914888 R 196162 CDS YP_925817.1 119718852 4596091 complement(4915766..4916971) 1 NC_008699.1 PFAM: ROK family protein; KEGG: sma:SAV1081 ROK-family transcriptional regulator; ROK family protein 4916971 4596091 Noca_4635 Nocardioides sp. JS614 ROK family protein YP_925817.1 4915766 R 196162 CDS YP_925818.1 119718853 4596092 4917093..4917956 1 NC_008699.1 hypothetical protein 4917956 4596092 Noca_4636 Nocardioides sp. JS614 hypothetical protein YP_925818.1 4917093 D 196162 CDS YP_925819.1 119718854 4596093 4918023..4918604 1 NC_008699.1 PFAM: GCN5-related N-acetyltransferase; KEGG: fal:FRAAL3248 putative acetyltransferase; N-acetyltransferase GCN5 4918604 4596093 Noca_4637 Nocardioides sp. JS614 N-acetyltransferase GCN5 YP_925819.1 4918023 D 196162 CDS YP_925820.1 119718855 4596094 complement(4918612..4919280) 1 NC_008699.1 PFAM: GCN5-related N-acetyltransferase; KEGG: lxx:Lxx17400 acetyltransferase; N-acetyltransferase GCN5 4919280 4596094 Noca_4638 Nocardioides sp. JS614 N-acetyltransferase GCN5 YP_925820.1 4918612 R 196162 CDS YP_925821.1 119718856 4596095 4919423..4920943 1 NC_008699.1 KEGG: fal:FRAAL6508 putative serine/threonine protein kinase; hypothetical protein 4920943 4596095 Noca_4639 Nocardioides sp. JS614 hypothetical protein YP_925821.1 4919423 D 196162 CDS YP_925822.1 119718857 4596096 complement(4920965..4921705) 1 NC_008699.1 KEGG: btk:BT9727_2577 hypothetical protein; hypothetical protein 4921705 4596096 Noca_4640 Nocardioides sp. JS614 hypothetical protein YP_925822.1 4920965 R 196162 CDS YP_925823.1 119718858 4596097 complement(4921702..4922166) 1 NC_008699.1 hypothetical protein 4922166 4596097 Noca_4641 Nocardioides sp. JS614 hypothetical protein YP_925823.1 4921702 R 196162 CDS YP_925824.1 119718859 4596098 4922232..4922468 1 NC_008699.1 hypothetical protein 4922468 4596098 Noca_4642 Nocardioides sp. JS614 hypothetical protein YP_925824.1 4922232 D 196162 CDS YP_925825.1 119718860 4596504 4922465..4923118 1 NC_008699.1 PFAM: Sigma-70, region 4 type 2; KEGG: rpa:RPA1819 RNA polymerase ECF-type sigma factor, possible FecI; sigma-70 factor 4923118 4596504 Noca_4643 Nocardioides sp. JS614 sigma-70 factor YP_925825.1 4922465 D 196162 CDS YP_925826.1 119718861 4596505 4923115..4923348 1 NC_008699.1 hypothetical protein 4923348 4596505 Noca_4644 Nocardioides sp. JS614 hypothetical protein YP_925826.1 4923115 D 196162 CDS YP_925827.1 119718862 4596506 4923360..4924292 1 NC_008699.1 PFAM: Patatin; KEGG: rha:RHA1_ro01898 possible lipid acyl hydrolase; patatin 4924292 4596506 Noca_4645 Nocardioides sp. JS614 patatin YP_925827.1 4923360 D 196162 CDS YP_925828.1 119718863 4596507 4924352..4924687 1 NC_008699.1 PFAM: protein of unknown function DUF488; KEGG: nha:Nham_3631 protein of unknown function DUF488; hypothetical protein 4924687 4596507 Noca_4646 Nocardioides sp. JS614 hypothetical protein YP_925828.1 4924352 D 196162 CDS YP_925829.1 119718864 4596508 4924749..4925198 1 NC_008699.1 PFAM: NC domain protein; KEGG: syf:Synpcc7942_2528 hypothetical protein; NC domain-containing protein 4925198 4596508 Noca_4647 Nocardioides sp. JS614 NC domain-containing protein YP_925829.1 4924749 D 196162 CDS YP_925830.1 119718865 4596509 4925226..4925723 1 NC_008699.1 PFAM: GtrA family protein; KEGG: tfu:Tfu_2548 hypothetical protein; GtrA family protein 4925723 4596509 Noca_4648 Nocardioides sp. JS614 GtrA family protein YP_925830.1 4925226 D 196162 CDS YP_925831.1 119718866 4596510 complement(4926034..4927053) 1 NC_008699.1 KEGG: nfa:pnf1690 hypothetical protein; hypothetical protein 4927053 4596510 Noca_4649 Nocardioides sp. JS614 hypothetical protein YP_925831.1 4926034 R 196162 CDS YP_925832.1 119718867 4596511 4927187..4927501 1 NC_008699.1 hypothetical protein 4927501 4596511 Noca_4650 Nocardioides sp. JS614 hypothetical protein YP_925832.1 4927187 D 196162 CDS YP_925833.1 119718868 4596512 4927602..4928963 1 NC_008699.1 KEGG: mpa:MAP3467c hypothetical protein; hypothetical protein 4928963 4596512 Noca_4651 Nocardioides sp. JS614 hypothetical protein YP_925833.1 4927602 D 196162 CDS YP_925834.1 119718869 4596513 4929169..4930671 1 NC_008699.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: mlo:mll9045 transposase; transposase, IS111A/IS1328/IS1533 4930671 4596513 Noca_4652 Nocardioides sp. JS614 transposase, IS111A/IS1328/IS1533 YP_925834.1 4929169 D 196162 CDS YP_925835.1 119718870 4596514 complement(4931409..4931759) 1 NC_008699.1 hypothetical protein 4931759 4596514 Noca_4653 Nocardioides sp. JS614 hypothetical protein YP_925835.1 4931409 R 196162 CDS YP_925836.1 119718871 4596515 complement(4932078..4932707) 1 NC_008699.1 PFAM: NUDIX hydrolase; NUDIX hydrolase 4932707 4596515 Noca_4654 Nocardioides sp. JS614 NUDIX hydrolase YP_925836.1 4932078 R 196162 CDS YP_925837.1 119718872 4596516 complement(4932704..4933438) 1 NC_008699.1 hypothetical protein 4933438 4596516 Noca_4655 Nocardioides sp. JS614 hypothetical protein YP_925837.1 4932704 R 196162 CDS YP_925838.1 119718873 4596517 complement(4933763..4934356) 1 NC_008699.1 KEGG: nar:Saro_2717 hypothetical protein; hypothetical protein 4934356 4596517 Noca_4656 Nocardioides sp. JS614 hypothetical protein YP_925838.1 4933763 R 196162 CDS YP_925839.1 119718874 4596518 complement(4934880..4937354) 1 NC_008699.1 PFAM: DnaB domain protein helicase, N-terminal domain protein; DnaB domain protein helicase, C-terminal domain protein; KEGG: mmc:Mmcs_5366 DnaB helicase-like protein; DnaB domain-containing protein 4937354 4596518 Noca_4657 Nocardioides sp. JS614 DnaB domain-containing protein YP_925839.1 4934880 R 196162 CDS YP_925840.1 119718875 4596519 4937851..4939230 1 NC_008699.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: sma:SAV4285 DNA-damage-inducible protein F; MATE efflux family protein 4939230 4596519 Noca_4658 Nocardioides sp. JS614 MATE efflux family protein YP_925840.1 4937851 D 196162 CDS YP_925841.1 119718876 4596520 4939273..4939812 1 NC_008699.1 hypothetical protein 4939812 4596520 Noca_4659 Nocardioides sp. JS614 hypothetical protein YP_925841.1 4939273 D 196162 CDS YP_925842.1 119718877 4596521 4939889..4941091 1 NC_008699.1 KEGG: mxa:MXAN_5598 OmpA domain protein; hypothetical protein 4941091 4596521 Noca_4660 Nocardioides sp. JS614 hypothetical protein YP_925842.1 4939889 D 196162 CDS YP_925843.1 119718878 4596522 complement(4941228..4941674) 1 NC_008699.1 PFAM: ribosomal protein L9; KEGG: tfu:Tfu_3092 ribosomal protein L9; 50S ribosomal protein L9 4941674 4596522 Noca_4661 Nocardioides sp. JS614 50S ribosomal protein L9 YP_925843.1 4941228 R 196162 CDS YP_925844.1 119718879 4596523 complement(4941689..4941925) 1 NC_008699.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 4941925 rpsR 4596523 rpsR Nocardioides sp. JS614 30S ribosomal protein S18 YP_925844.1 4941689 R 196162 CDS YP_925845.1 119718880 4596524 complement(4942006..4942572) 1 NC_008699.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: fra:Francci3_4521 single-strand binding protein; single-strand binding protein 4942572 4596524 Noca_4663 Nocardioides sp. JS614 single-strand binding protein YP_925845.1 4942006 R 196162 CDS YP_925846.1 119718881 4596525 complement(4942697..4942987) 1 NC_008699.1 PFAM: ribosomal protein S6; KEGG: mpa:MAP0067 30S ribosomal protein S6; 30S ribosomal protein S6 4942987 4596525 Noca_4664 Nocardioides sp. JS614 30S ribosomal protein S6 YP_925846.1 4942697 R 196162 CDS YP_925847.1 119718882 4596526 4943349..4944272 1 NC_008699.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: sco:SCO3860 serine/threonine protein kinase; protein kinase 4944272 4596526 Noca_4665 Nocardioides sp. JS614 protein kinase YP_925847.1 4943349 D 196162 CDS YP_925848.1 119718883 4596527 4944582..4945391 1 NC_008699.1 Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 4945391 4596527 Noca_4666 Nocardioides sp. JS614 endonuclease IV YP_925848.1 4944582 D 196162 CDS YP_925849.1 119718884 4596528 4945388..4945801 1 NC_008699.1 KEGG: sco:SCO4220 hypothetical protein; hypothetical protein 4945801 4596528 Noca_4667 Nocardioides sp. JS614 hypothetical protein YP_925849.1 4945388 D 196162 CDS YP_925850.1 119718885 4596529 complement(4945825..4946124) 1 NC_008699.1 hypothetical protein 4946124 4596529 Noca_4668 Nocardioides sp. JS614 hypothetical protein YP_925850.1 4945825 R 196162 CDS YP_925851.1 119718886 4596530 complement(4946259..4948694) 1 NC_008699.1 PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: sco:SCO6994 hypothetical protein; hypothetical protein 4948694 4596530 Noca_4669 Nocardioides sp. JS614 hypothetical protein YP_925851.1 4946259 R 196162 CDS YP_925852.1 119718887 4596531 complement(4948702..4950297) 1 NC_008699.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: sco:SCO6995 protease; peptidase S8/S53 subtilisin kexin sedolisin 4950297 4596531 Noca_4670 Nocardioides sp. JS614 peptidase S8/S53 subtilisin kexin sedolisin YP_925852.1 4948702 R 196162 CDS YP_925853.1 119718888 4596532 complement(4950311..4950772) 1 NC_008699.1 hypothetical protein 4950772 4596532 Noca_4671 Nocardioides sp. JS614 hypothetical protein YP_925853.1 4950311 R 196162 CDS YP_925854.1 119718889 4596533 complement(4950772..4951383) 1 NC_008699.1 PFAM: sigma-70 region 2 domain protein; KEGG: sco:SCO6996 RNA polymerase sigma factor; sigma-70 region 2 domain-containing protein 4951383 4596533 Noca_4672 Nocardioides sp. JS614 sigma-70 region 2 domain-containing protein YP_925854.1 4950772 R 196162 CDS YP_925855.1 119718890 4596534 4951556..4952707 1 NC_008699.1 PFAM: Methicillin resistance protein; KEGG: sco:SCO3593 hypothetical protein; methicillin resistance protein 4952707 4596534 Noca_4673 Nocardioides sp. JS614 methicillin resistance protein YP_925855.1 4951556 D 196162 CDS YP_925856.1 119718891 4596535 4952715..4953770 1 NC_008699.1 PFAM: alanine racemase domain protein; KEGG: sco:SCO3903 hypothetical protein; alanine racemase domain-containing protein 4953770 4596535 Noca_4674 Nocardioides sp. JS614 alanine racemase domain-containing protein YP_925856.1 4952715 D 196162 CDS YP_925857.1 119718892 4598219 complement(4953856..4955346) 1 NC_008699.1 KEGG: sco:SCO3902 integral membrane protein; integral membrane protein 4955346 4598219 Noca_4675 Nocardioides sp. JS614 integral membrane protein YP_925857.1 4953856 R 196162 CDS YP_925858.1 119718893 4598220 complement(4955357..4957693) 1 NC_008699.1 PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; KEGG: pac:PPA0126 putative penicillin-binding protein; glycosyl transferase family protein 4957693 4598220 Noca_4676 Nocardioides sp. JS614 glycosyl transferase family protein YP_925858.1 4955357 R 196162 CDS YP_925859.1 119718894 4598221 4957890..4958501 1 NC_008699.1 PFAM: transcriptional regulator PadR family protein; KEGG: sma:SAV4295 transcriptional regulator PadR-like family; PadR family transcriptional regulator 4958501 4598221 Noca_4677 Nocardioides sp. JS614 PadR family transcriptional regulator YP_925859.1 4957890 D 196162 CDS YP_925860.1 119718895 4598222 4958562..4959647 1 NC_008699.1 PFAM: Myo-inositol-1-phosphate synthase; Myo-inositol-1-phosphate synthase, GAPDH domain protein; KEGG: tfu:Tfu_3099 myo-inositol-1-phosphate synthase; myo-inositol-1-phosphate synthase 4959647 4598222 Noca_4678 Nocardioides sp. JS614 myo-inositol-1-phosphate synthase YP_925860.1 4958562 D 196162 CDS YP_925861.1 119718896 4598223 4959854..4963957 1 NC_008699.1 PFAM: PKD domain containing protein; peptidase M6, immune inhibitor A; KEGG: gka:GK1831 metal-dependent protease; PKD domain-containing protein 4963957 4598223 Noca_4679 Nocardioides sp. JS614 PKD domain-containing protein YP_925861.1 4959854 D 196162 CDS YP_925862.1 119718897 4598224 complement(4964017..4965606) 1 NC_008699.1 PFAM: protein of unknown function DUF853, NPT hydrolase putative; KEGG: sma:SAV4175 hypothetical protein; hypothetical protein 4965606 4598224 Noca_4680 Nocardioides sp. JS614 hypothetical protein YP_925862.1 4964017 R 196162 CDS YP_925863.1 119718898 4598225 complement(4965705..4967156) 1 NC_008699.1 KEGG: sma:SAV4299 putative RNA nucleotidyltransferase; TIGRFAM: metal dependent phophohydrolase; HDIG domain protein; PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; HDIG domain-containing protein 4967156 4598225 Noca_4681 Nocardioides sp. JS614 HDIG domain-containing protein YP_925863.1 4965705 R 196162 CDS YP_925864.1 119718899 4598226 4967226..4969433 1 NC_008699.1 KEGG: sco:SCO3895 hypothetical protein; hypothetical protein 4969433 4598226 Noca_4682 Nocardioides sp. JS614 hypothetical protein YP_925864.1 4967226 D 196162 CDS YP_925865.1 119718900 4598227 4969430..4971088 1 NC_008699.1 TIGRFAM: integral membrane protein MviN; PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: sma:SAV4052 transmembrane protein; integral membrane protein MviN 4971088 4598227 Noca_4683 Nocardioides sp. JS614 integral membrane protein MviN YP_925865.1 4969430 D 196162 CDS YP_925866.1 119718901 4598228 4971168..4973036 1 NC_008699.1 SMART: serine/threonine protein kinase; KEGG: pac:PPA2303 probable serine-threonine protein kinase; serine/threonine protein kinase 4973036 4598228 Noca_4684 Nocardioides sp. JS614 serine/threonine protein kinase YP_925866.1 4971168 D 196162 CDS YP_925867.1 119718902 4598229 4973077..4973778 1 NC_008699.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription: in Mycobacterium bovis this protein has been shown to be active at high temperatures and during stationary phase; RNA polymerase sigma factor SigM 4973778 4598229 Noca_4685 Nocardioides sp. JS614 RNA polymerase sigma factor SigM YP_925867.1 4973077 D 196162 CDS YP_925868.1 119718903 4598230 4973841..4974608 1 NC_008699.1 hypothetical protein 4974608 4598230 Noca_4686 Nocardioides sp. JS614 hypothetical protein YP_925868.1 4973841 D 196162 CDS YP_925869.1 119718904 4598231 4974736..4975725 1 NC_008699.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sco:SCO3890 thioredoxin reductase (NADPH); thioredoxin reductase 4975725 4598231 Noca_4687 Nocardioides sp. JS614 thioredoxin reductase YP_925869.1 4974736 D 196162 CDS YP_925870.1 119718905 4598232 4975837..4976163 1 NC_008699.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: sma:SAV4306 putative thioredoxin; thioredoxin 4976163 4598232 Noca_4688 Nocardioides sp. JS614 thioredoxin YP_925870.1 4975837 D 196162 CDS YP_925871.1 119718906 4598233 complement(4976270..4976944) 1 NC_008699.1 PFAM: GCN5-related N-acetyltransferase; KEGG: fra:Francci3_4539 conserved hypothetical protein; N-acetyltransferase GCN5 4976944 4598233 Noca_4689 Nocardioides sp. JS614 N-acetyltransferase GCN5 YP_925871.1 4976270 R 196162 CDS YP_925872.1 119718907 4598234 4977012..4978331 1 NC_008699.1 PFAM: aminotransferase, class I and II; KEGG: tfu:Tfu_1641 valine-pyruvate aminotransferase; class I and II aminotransferase 4978331 4598234 Noca_4690 Nocardioides sp. JS614 class I and II aminotransferase YP_925872.1 4977012 D 196162 CDS YP_925873.1 119718908 4598235 4978354..4979325 1 NC_008699.1 KEGG: tfu:Tfu_1640 D-alanine--D-alanine ligase; TIGRFAM: D-alanine--D-alanine ligase; PFAM: phosphoribosylglycinamide synthetase; D-alanine--D-alanine ligase domain protein; D-alanine--D-alanine ligase 4979325 4598235 Noca_4691 Nocardioides sp. JS614 D-alanine--D-alanine ligase YP_925873.1 4978354 D 196162 CDS YP_925874.1 119718909 4598236 4979327..4980103 1 NC_008699.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: nfa:nfa1490 putative 1-acylglycerol-3-phosphate O-acyltransferase; phospholipid/glycerol acyltransferase 4980103 4598236 Noca_4692 Nocardioides sp. JS614 phospholipid/glycerol acyltransferase YP_925874.1 4979327 D 196162 CDS YP_925875.1 119718910 4598237 complement(4980138..4981094) 1 NC_008699.1 TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: sma:SAV4308 putative ParB homolog; chromosome segregation DNA-binding protein 4981094 4598237 Noca_4693 Nocardioides sp. JS614 chromosome segregation DNA-binding protein YP_925875.1 4980138 R 196162 CDS YP_925876.1 119718911 4598238 complement(4981094..4982179) 1 NC_008699.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: sma:SAV4309 putative partitioning or sporulation protein; chromosome segregation ATPase 4982179 4598238 Noca_4694 Nocardioides sp. JS614 chromosome segregation ATPase YP_925876.1 4981094 R 196162 CDS YP_925877.1 119718912 4598239 complement(4982176..4982928) 1 NC_008699.1 TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: tfu:Tfu_3112 glucose inhibited division protein; methyltransferase GidB 4982928 4598239 Noca_4695 Nocardioides sp. JS614 methyltransferase GidB YP_925877.1 4982176 R 196162 CDS YP_925878.1 119718913 4598240 complement(4982939..4983517) 1 NC_008699.1 PFAM: single-stranded nucleic acid binding R3H domain protein; KEGG: sma:SAV4311 putative Jag-like protein; single-stranded nucleic acid binding R3H domain-containing protein 4983517 4598240 Noca_4696 Nocardioides sp. JS614 single-stranded nucleic acid binding R3H domain-containing protein YP_925878.1 4982939 R 196162 CDS YP_925879.1 119718914 4598241 complement(4983514..4984605) 1 NC_008699.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC 4984605 4598241 Noca_4697 Nocardioides sp. JS614 putative inner membrane protein translocase component YidC YP_925879.1 4983514 R 196162 CDS YP_925880.1 119718915 4598242 complement(4984609..4984887) 1 NC_008699.1 PFAM: protein of unknown function DUF37; KEGG: pol:Bpro_4906 protein of unknown function DUF37; hypothetical protein 4984887 4598242 Noca_4698 Nocardioides sp. JS614 hypothetical protein YP_925880.1 4984609 R 196162 CDS YP_925881.1 119718916 4598243 complement(4984884..4985237) 1 NC_008699.1 TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: sma:SAV4314 putative RNase P component; ribonuclease P protein component 4985237 4598243 Noca_4699 Nocardioides sp. JS614 ribonuclease P protein component YP_925881.1 4984884 R 196162 CDS YP_925882.1 119718917 4598244 complement(4985272..4985409) 1 NC_008699.1 PFAM: ribosomal protein L34; KEGG: tfu:Tfu_3117 ribosomal protein L34; 50S ribosomal protein L34 4985409 4598244 Noca_4700 Nocardioides sp. JS614 50S ribosomal protein L34 YP_925882.1 4985272 R 196162 CDS