-- dump date 20140619_164538 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 335283000001 SEQ_END SEQ_END NC_008341.1 65132 65132 DR NC_008341.1; contig end 65132..65132 Nitrosomonas eutropha C91 335283000002 SEQ_END SEQ_END NC_008342.1 55635 55635 DR NC_008342.1; contig end 55635..55635 Nitrosomonas eutropha C91 335283000003 SEQ_END SEQ_END NC_008344.1 2661057 2661057 DR NC_008344.1; contig end 2661057..2661057 Nitrosomonas eutropha C91 YP_743715.1 CDS Neut_2533 NC_008341.1 222 3155 D PFAM: transposase Tn3 family protein; KEGG: mlo:mlr9023 transposase; transposase Tn3 family protein 222..3155 Nitrosomonas eutropha C91 4271705 YP_743716.1 CDS Neut_2534 NC_008341.1 3243 3731 R PFAM: Endonuclease I; KEGG: plu:plu2037 hypothetical protein; deoxyribonuclease I complement(3243..3731) Nitrosomonas eutropha C91 4271706 YP_743717.1 CDS Neut_2535 NC_008341.1 3789 4745 R KEGG: rfr:Rfer_4437 hypothetical protein; hypothetical protein complement(3789..4745) Nitrosomonas eutropha C91 4271707 YP_743718.1 CDS Neut_2536 NC_008341.1 4732 5544 R KEGG: noc:Noc_A0020 hypothetical protein; hypothetical protein complement(4732..5544) Nitrosomonas eutropha C91 4271708 YP_743719.1 CDS Neut_2538 NC_008341.1 5945 6559 D PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: rme:Rmet_4975 resolvase-like protein; resolvase domain-containing protein 5945..6559 Nitrosomonas eutropha C91 4271709 YP_743720.1 CDS Neut_2539 NC_008341.1 6945 8207 R PFAM: conjugation TrbI family protein; KEGG: xfa:XFa0040 conjugal transfer protein; conjugation TrbI family protein complement(6945..8207) Nitrosomonas eutropha C91 4271710 YP_743721.1 CDS Neut_2540 NC_008341.1 8303 8761 R PFAM: Conjugal transfer TrbH family protein; KEGG: bhe:BH14980 hypothetical protein; conjugal transfer TrbH family protein complement(8303..8761) Nitrosomonas eutropha C91 4271711 YP_743722.1 CDS Neut_2541 NC_008341.1 8758 9339 R PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: reu:Reut_D6507 conjugal transfer protein TrbG/VirB9/CagX; conjugal transfer protein TrbG/VirB9/CagX complement(8758..9339) Nitrosomonas eutropha C91 4271743 YP_743723.1 CDS Neut_2542 NC_008341.1 9523 10083 D PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: stm:PSLT045 putative resolvase; resolvase domain-containing protein 9523..10083 Nitrosomonas eutropha C91 4271744 YP_743724.1 CDS Neut_2543 NC_008341.1 10067 11722 D PFAM: Integrase, catalytic region; KEGG: psp:PSPPH_B0058 site-specific recombinase, phage integrase family; integrase catalytic subunit 10067..11722 Nitrosomonas eutropha C91 4271745 YP_743725.1 CDS Neut_2544 NC_008341.1 11712 12680 D SMART: AAA ATPase; KEGG: stm:PSLT043 type II secretion system protein; AAA ATPase 11712..12680 Nitrosomonas eutropha C91 4271746 YP_743726.1 CDS Neut_2545 NC_008341.1 12800 15715 D PFAM: UvrD/REP helicase; KEGG: fnu:FN0524 DNA helicase II; UvrD/REP helicase 12800..15715 Nitrosomonas eutropha C91 4271747 YP_743727.1 CDS Neut_2546 NC_008341.1 15715 17703 D PFAM: DNA methylase N-4/N-6 domain protein; KEGG: lpp:lpp0197 hypothetical protein; DNA methylase N-4/N-6 domain-containing protein 15715..17703 Nitrosomonas eutropha C91 4271748 YP_743728.1 CDS Neut_2547 NC_008341.1 17693 20386 D KEGG: vvy:VV2238 hypothetical protein; hypothetical protein 17693..20386 Nitrosomonas eutropha C91 4271749 YP_743729.1 CDS Neut_2548 NC_008341.1 20607 21059 R KEGG: eba:p2B6 mating pair formation protein TrbG; mating pair formation protein TrbG complement(20607..21059) Nitrosomonas eutropha C91 4271750 YP_743730.1 CDS Neut_2549 NC_008341.1 21073 21765 R PFAM: Conjugal transfer protein; KEGG: atc:AGR_pTi_74 conjugal transfer protein TrbF; conjugal transfer protein complement(21073..21765) Nitrosomonas eutropha C91 4271751 YP_743731.1 CDS Neut_2550 NC_008341.1 21880 23334 R KEGG: bms:BRA0366 trbL protein; trbL protein complement(21880..23334) Nitrosomonas eutropha C91 4271752 YP_743732.1 CDS Neut_2551 NC_008341.1 23637 24386 R KEGG: bms:BRA0368 TrbJ protein; TrbJ protein complement(23637..24386) Nitrosomonas eutropha C91 4271753 YP_743733.1 CDS Neut_2552 NC_008341.1 24364 26862 R PFAM: CagE, TrbE, VirB component of type IV transporter system; SMART: AAA ATPase; KEGG: ret:RHE_PA00175 conjugal transfer protein E; CagE, TrbE, VirB component of type IV transporter system complement(24364..26862) Nitrosomonas eutropha C91 4271754 YP_743734.1 CDS Neut_2553 NC_008341.1 26877 27194 R PFAM: Conjugal transfer TrbD family protein; KEGG: atc:AGR_pTi_85 probable TrbD gene; conjugal transfer protein TrbD complement(26877..27194) Nitrosomonas eutropha C91 4271755 YP_743735.1 CDS Neut_2554 NC_008341.1 27197 27652 R PFAM: Conjugal transfer protein TrbC; KEGG: ret:RHE_PA00177 conjugal transfer protein C; conjugal transfer protein TrbC complement(27197..27652) Nitrosomonas eutropha C91 4271756 YP_743736.1 CDS Neut_2555 NC_008341.1 27662 28627 R PFAM: type II secretion system protein E; KEGG: ret:RHE_PA00178 conjugal transfer protein B; type II secretion system protein E complement(27662..28627) Nitrosomonas eutropha C91 4271757 YP_743737.1 CDS Neut_2556 NC_008341.1 28725 28982 R SMART: helix-turn-helix domain protein; KEGG: xfa:XFa0001 transcriptional regulator; XRE family transcriptional regulator complement(28725..28982) Nitrosomonas eutropha C91 4271758 YP_743738.1 CDS Neut_2557 NC_008341.1 29038 30006 D PFAM: TrfA family protein; KEGG: reu:Reut_D6499 TrfA; TrfA family protein 29038..30006 Nitrosomonas eutropha C91 4271759 YP_743739.1 CDS Neut_2558 NC_008341.1 30612 31382 R hypothetical protein complement(30612..31382) Nitrosomonas eutropha C91 4271760 YP_743740.1 CDS Neut_2559 NC_008341.1 31462 31689 D PFAM: SpoVT/AbrB domain protein; KEGG: rpb:RPB_1432 transcriptional regulator/antitoxin, MazE; transcriptional regulator/antitoxin, MazE 31462..31689 Nitrosomonas eutropha C91 4271726 YP_743741.1 CDS Neut_2560 NC_008341.1 31686 32075 D TIGRFAM: death-on-curing family protein; PFAM: Death-on-curing protein; KEGG: neu:NE1266 putative death on curing protein; death-on-curing family protein 31686..32075 Nitrosomonas eutropha C91 4271727 YP_743742.1 CDS Neut_2561 NC_008341.1 32150 36691 R PFAM: helicase domain protein; type III restriction enzyme, res subunit; SMART: DEAD/DEAH box helicase domain protein; KEGG: pst:PSPTO0037 helicase domain protein; type III restriction enzyme, res subunit complement(32150..36691) Nitrosomonas eutropha C91 4271728 YP_743743.1 CDS Neut_2562 NC_008341.1 36868 39840 R PFAM: transposase Tn3 family protein; KEGG: sec:SC008 transposase; transposase Tn3 family protein complement(36868..39840) Nitrosomonas eutropha C91 4271729 YP_743744.1 CDS Neut_2563 NC_008341.1 39843 40400 R PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: sty:HCM1.168 resolvase; resolvase domain-containing protein complement(39843..40400) Nitrosomonas eutropha C91 4271730 YP_743745.1 CDS Neut_2564 NC_008341.1 40530 40742 R KEGG: sty:HCM1.161 hypothetical protein; hypothetical protein complement(40530..40742) Nitrosomonas eutropha C91 4271731 YP_743746.1 CDS Neut_2565 NC_008341.1 40808 41044 R PFAM: MerE family protein; KEGG: sty:HCM1.160 hypothetical protein; putative mercury resistance protein complement(40808..41044) Nitrosomonas eutropha C91 4271732 YP_743747.1 CDS Neut_2566 NC_008341.1 41041 41406 R TIGRFAM: mercuric resistence transcriptional repressor protein MerD; PFAM: regulatory protein, MerR; KEGG: sty:HCM1.159 putative mercuric resistance operon coregulator; transcriptional regulator MerD complement(41041..41406) Nitrosomonas eutropha C91 4271733 YP_743748.1 CDS Neut_2567 NC_008341.1 41424 43106 R TIGRFAM: mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; Heavy metal transport/detoxification protein; KEGG: bxe:Bxe_C1213 putative mercuric ion reductase; putative mercuric reductase complement(41424..43106) Nitrosomonas eutropha C91 4271734 YP_743749.1 CDS Neut_2568 NC_008341.1 43145 43552 R PFAM: MerC mercury resistance protein; KEGG: neu:NE0840 putative mercury transport protein; putative mercury transport protein MerC complement(43145..43552) Nitrosomonas eutropha C91 4271735 YP_743750.1 CDS Neut_2569 NC_008341.1 43580 43855 R TIGRFAM: mercuric transport protein periplasmic component; PFAM: Heavy metal transport/detoxification protein; KEGG: rme:Rmet_6173 mercuric transport protein periplasmic component; mercuric transport protein periplasmic component complement(43580..43855) Nitrosomonas eutropha C91 4271736 YP_743751.1 CDS Neut_2570 NC_008341.1 43871 44221 R PFAM: Mercuric transport protein MerT; KEGG: sty:HCM1.152 putative mercuric transport protein; putative mercuric transport protein complement(43871..44221) Nitrosomonas eutropha C91 4271737 YP_743752.1 CDS Neut_2571 NC_008341.1 44293 44748 D TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: sty:HCM1.151c putative mercuric resistance operon regulatory protein; putative transcriptional regulator MerR 44293..44748 Nitrosomonas eutropha C91 4271738 YP_743753.1 CDS Neut_2572 NC_008341.1 44755 45192 R KEGG: pst:PSPTO0037 helicase domain protein; helicase domain-containing protein complement(44755..45192) Nitrosomonas eutropha C91 4271739 YP_743754.1 CDS Neut_2573 NC_008341.1 45440 46072 R PFAM: protein of unknown function DUF159; KEGG: psp:PSPPH_B0011 hypothetical protein; hypothetical protein complement(45440..46072) Nitrosomonas eutropha C91 4271740 YP_743755.1 CDS Neut_2574 NC_008341.1 46129 46572 D PFAM: peptidase S24, S26A and S26B; KEGG: rfr:Rfer_4342 putative prophage repressor; putative prophage repressor 46129..46572 Nitrosomonas eutropha C91 4271741 YP_743756.1 CDS Neut_2575 NC_008341.1 46579 47874 D PFAM: UMUC domain protein DNA-repair protein; KEGG: pol:Bpro_4983 UMUC-like DNA-repair protein; DNA-directed DNA polymerase 46579..47874 Nitrosomonas eutropha C91 4271742 YP_743757.1 CDS Neut_2576 NC_008341.1 47973 48413 R hypothetical protein complement(47973..48413) Nitrosomonas eutropha C91 4271712 YP_743758.1 CDS Neut_2577 NC_008341.1 48429 49139 R KEGG: noc:Noc_3067 transfer origin protein, TraL; transfer origin protein, TraL complement(48429..49139) Nitrosomonas eutropha C91 4271713 YP_743759.1 CDS Neut_2578 NC_008341.1 49795 50190 D KEGG: bms:BRA0372 TraJ protein; TraJ protein 49795..50190 Nitrosomonas eutropha C91 4271714 YP_743760.1 CDS Neut_2579 NC_008341.1 50171 52219 D PFAM: Relaxase/mobilization nuclease family protein; KEGG: bms:BRA0373 TraI protein, putative; relaxase/mobilization nuclease family protein 50171..52219 Nitrosomonas eutropha C91 4271715 YP_743761.1 CDS Neut_2580 NC_008341.1 52240 54159 D type IV secretion system VirD4 family; conjugal transfer coupling protein TraG 52240..54159 Nitrosomonas eutropha C91 4271716 YP_743762.1 CDS Neut_2581 NC_008341.1 54156 54716 D KEGG: eba:p2B18 TraF protein of DNA transfer system; Type IV secretory pathway protease TraF-like 54156..54716 Nitrosomonas eutropha C91 4271717 YP_743763.1 CDS Neut_2582 NC_008341.1 54793 55551 D PFAM: Lytic transglycosylase, catalytic; KEGG: xfa:XFa0002 conjugal transfer protein; lytic transglycosylase, catalytic 54793..55551 Nitrosomonas eutropha C91 4271718 YP_743764.1 CDS Neut_2583 NC_008341.1 55554 58736 D PFAM: domain of unknown function DUF1738; KEGG: reu:Reut_D6521 toprim; hypothetical protein 55554..58736 Nitrosomonas eutropha C91 4271719 YP_743765.1 CDS Neut_2584 NC_008341.1 58940 59557 D PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: gox:GOX2702 ParA-like protein; cobyrinic acid a,c-diamide synthase 58940..59557 Nitrosomonas eutropha C91 4271720 YP_743766.1 CDS Neut_2585 NC_008341.1 59554 59832 D hypothetical protein 59554..59832 Nitrosomonas eutropha C91 4271721 YP_743767.1 CDS Neut_2586 NC_008341.1 60002 60226 R KEGG: plu:plu2037 hypothetical protein; hypothetical protein complement(60002..60226) Nitrosomonas eutropha C91 4271722 YP_743768.1 CDS Neut_2587 NC_008341.1 60780 62216 D PFAM: aldehyde dehydrogenase; KEGG: bte:BTH_I0706 aldehyde dehydrogenase family protein; aldehyde dehydrogenase 60780..62216 Nitrosomonas eutropha C91 4271723 YP_743769.1 CDS Neut_2588 NC_008341.1 63109 64320 R hypothetical protein complement(63109..64320) Nitrosomonas eutropha C91 4271724 YP_743770.1 CDS Neut_2589 NC_008342.1 344 706 D PFAM: mobilisation protein; KEGG: vfi:VFB49 hypothetical protein; mobilisation protein 344..706 Nitrosomonas eutropha C91 4271778 YP_743771.1 CDS Neut_2590 NC_008342.1 690 3452 D KEGG: psp:PSPPH_B0050 relaxase, putative; hypothetical protein 690..3452 Nitrosomonas eutropha C91 4271779 YP_743772.1 CDS Neut_2591 NC_008342.1 3744 4265 R PFAM: TrbM family protein; KEGG: reu:Reut_D6513 TrbM; TrbM family protein complement(3744..4265) Nitrosomonas eutropha C91 4271780 YP_743773.1 CDS Neut_2592 NC_008342.1 4541 5347 D PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: xfa:XFa0060 plasmid replication protein; cobyrinic acid a,c-diamide synthase 4541..5347 Nitrosomonas eutropha C91 4271781 YP_743774.1 CDS Neut_2593 NC_008342.1 5344 5715 D KEGG: xfa:XFa0020 hypothetical protein; hypothetical protein 5344..5715 Nitrosomonas eutropha C91 4271782 YP_743775.1 CDS Neut_2594 NC_008342.1 5740 6897 D TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: xfa:XFa0059 plasmid replication/partition protein; parB-like partition proteins 5740..6897 Nitrosomonas eutropha C91 4271783 YP_743776.1 CDS Neut_2595 NC_008342.1 6910 7572 D hypothetical protein 6910..7572 Nitrosomonas eutropha C91 4271784 YP_743777.1 CDS Neut_2596 NC_008342.1 8104 8364 D hypothetical protein 8104..8364 Nitrosomonas eutropha C91 4271785 YP_743778.1 CDS Neut_2597 NC_008342.1 8770 9315 D KEGG: lpp:plpp0059 hypothetical protein; hypothetical protein 8770..9315 Nitrosomonas eutropha C91 4271786 YP_743779.1 CDS Neut_2598 NC_008342.1 9458 9889 D hypothetical protein 9458..9889 Nitrosomonas eutropha C91 4271787 YP_743780.1 CDS Neut_2599 NC_008342.1 10042 10338 D hypothetical protein 10042..10338 Nitrosomonas eutropha C91 4271788 YP_743781.1 CDS Neut_2600 NC_008342.1 10664 11110 D PFAM: protein of unknown function DUF192; KEGG: zmo:ZMO0886 hypothetical protein; hypothetical protein 10664..11110 Nitrosomonas eutropha C91 4271789 YP_743782.1 CDS Neut_2601 NC_008342.1 11525 12046 D PFAM: DNA repair protein RadC; KEGG: rso:RSc2620 hypothetical protein; DNA repair protein RadC 11525..12046 Nitrosomonas eutropha C91 4271790 YP_743783.1 CDS Neut_2602 NC_008342.1 12676 13473 D KEGG: xfa:XFa0062 hypothetical protein; hypothetical protein 12676..13473 Nitrosomonas eutropha C91 4271791 YP_743784.1 CDS Neut_2603 NC_008342.1 14424 17117 R KEGG: vvy:VV2238 hypothetical protein; hypothetical protein complement(14424..17117) Nitrosomonas eutropha C91 4271792 YP_743785.1 CDS Neut_2604 NC_008342.1 17107 19095 R PFAM: DNA methylase N-4/N-6 domain protein; KEGG: lpp:lpp0197 hypothetical protein; DNA methylase N-4/N-6 domain-containing protein complement(17107..19095) Nitrosomonas eutropha C91 4271793 YP_743786.1 CDS Neut_2605 NC_008342.1 19095 22010 R PFAM: UvrD/REP helicase; KEGG: fnu:FN0524 DNA helicase II; UvrD/REP helicase complement(19095..22010) Nitrosomonas eutropha C91 4271794 YP_743787.1 CDS Neut_2606 NC_008342.1 22130 23098 R SMART: AAA ATPase; KEGG: stm:PSLT043 type II secretion system protein; AAA ATPase complement(22130..23098) Nitrosomonas eutropha C91 4271795 YP_743788.1 CDS Neut_2607 NC_008342.1 23088 24743 R PFAM: Integrase, catalytic region; KEGG: psp:PSPPH_B0058 site-specific recombinase, phage integrase family; integrase catalytic subunit complement(23088..24743) Nitrosomonas eutropha C91 4271796 YP_743789.1 CDS Neut_2608 NC_008342.1 24727 25287 R PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: stm:PSLT045 putative resolvase; resolvase domain-containing protein complement(24727..25287) Nitrosomonas eutropha C91 4271797 YP_743790.1 CDS Neut_2609 NC_008342.1 25611 25970 R KEGG: ade:Adeh_2152 hypothetical protein; hypothetical protein complement(25611..25970) Nitrosomonas eutropha C91 4271798 YP_743791.1 CDS Neut_2610 NC_008342.1 26077 26736 R PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: bld:BLi02083 hypothetical protein; Crp/FNR family transcriptional regulator complement(26077..26736) Nitrosomonas eutropha C91 4271799 YP_743792.1 CDS Neut_2612 NC_008342.1 27307 27921 D PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: rme:Rmet_4975 resolvase-like protein; resolvase domain-containing protein 27307..27921 Nitrosomonas eutropha C91 4271800 YP_743793.1 CDS Neut_2613 NC_008342.1 28006 28644 D PFAM: protein of unknown function DUF159; KEGG: psp:PSPPH_B0011 hypothetical protein; hypothetical protein 28006..28644 Nitrosomonas eutropha C91 4271801 YP_743794.1 CDS Neut_2614 NC_008342.1 28824 29882 R PFAM: Endonuclease I; KEGG: plu:plu2037 hypothetical protein; deoxyribonuclease I complement(28824..29882) Nitrosomonas eutropha C91 4271802 YP_743795.1 CDS Neut_2615 NC_008342.1 30116 30400 D PFAM: plasmid maintenance system killer; KEGG: pfl:PFL_5368 proteic killer protein, putative; plasmid maintenance system killer 30116..30400 Nitrosomonas eutropha C91 4271761 YP_743796.1 CDS Neut_2616 NC_008342.1 30372 30725 D TIGRFAM: addiction module antidote protein, HigA family; SMART: helix-turn-helix domain protein; KEGG: noc:Noc_0697 transcriptional regulator, XRE family; XRE family plasmid maintenance system antidote protein 30372..30725 Nitrosomonas eutropha C91 4271762 YP_743797.1 CDS Neut_2617 NC_008342.1 30993 31316 D KEGG: xac:XACb0017 partition protein C; partition protein C 30993..31316 Nitrosomonas eutropha C91 4271763 YP_743798.1 CDS Neut_2618 NC_008342.1 31501 32859 D KEGG: nha:Nham_0139 hypothetical protein; hypothetical protein 31501..32859 Nitrosomonas eutropha C91 4271764 YP_743799.1 CDS Neut_2619 NC_008342.1 33078 33383 D hypothetical protein 33078..33383 Nitrosomonas eutropha C91 4271765 YP_743800.1 CDS Neut_2620 NC_008342.1 33824 35416 R KEGG: neu:NE0746 hypothetical protein; hypothetical protein complement(33824..35416) Nitrosomonas eutropha C91 4271766 YP_743801.1 CDS Neut_2621 NC_008342.1 36370 36804 D KEGG: noc:Noc_A0020 hypothetical protein; hypothetical protein 36370..36804 Nitrosomonas eutropha C91 4271767 YP_743802.1 CDS Neut_2622 NC_008342.1 36985 38280 R PFAM: UMUC domain protein DNA-repair protein; KEGG: rfr:Rfer_4341 DNA-directed DNA polymerase; DNA-directed DNA polymerase complement(36985..38280) Nitrosomonas eutropha C91 4271768 YP_743803.1 CDS Neut_2623 NC_008342.1 38312 38689 R hypothetical protein complement(38312..38689) Nitrosomonas eutropha C91 4271769 YP_743804.1 CDS Neut_2624 NC_008342.1 38712 39116 R PFAM: peptidase S24, S26A and S26B; KEGG: rfr:Rfer_4342 putative prophage repressor; putative prophage repressor complement(38712..39116) Nitrosomonas eutropha C91 4271770 YP_743805.1 CDS Neut_2625 NC_008342.1 39667 40011 D KEGG: nha:Nham_1157 hypothetical protein; hypothetical protein 39667..40011 Nitrosomonas eutropha C91 4271771 YP_743806.1 CDS Neut_2626 NC_008342.1 40261 41391 R hypothetical protein complement(40261..41391) Nitrosomonas eutropha C91 4271772 YP_743807.1 CDS Neut_2627 NC_008342.1 41464 41706 R hypothetical protein complement(41464..41706) Nitrosomonas eutropha C91 4271773 YP_743808.1 CDS Neut_2628 NC_008342.1 41733 43733 R PFAM: TRAG family protein; KEGG: vfi:VFB44 protein VirD4; TRAG family protein complement(41733..43733) Nitrosomonas eutropha C91 4271774 YP_743809.1 CDS Neut_2629 NC_008342.1 43726 44844 R PFAM: type II secretion system protein E; KEGG: xac:XAC2618 VirB11 protein; type II secretion system protein E complement(43726..44844) Nitrosomonas eutropha C91 4271775 YP_743810.1 CDS Neut_2630 NC_008342.1 44848 45978 R PFAM: conjugation TrbI family protein; KEGG: bxe:Bxe_A1761 putative type IV secretion system protein VirB10; conjugation TrbI family protein complement(44848..45978) Nitrosomonas eutropha C91 4271776 YP_743811.1 CDS Neut_2631 NC_008342.1 45975 46730 R PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: bxe:Bxe_C0454 putative type IV secretion system protein VirB9; conjugal transfer protein TrbG/VirB9/CagX complement(45975..46730) Nitrosomonas eutropha C91 4271777 YP_743812.1 CDS Neut_2632 NC_008342.1 46727 47437 R PFAM: VirB8 family protein; KEGG: bxe:Bxe_A2652 putative type IV secretion system protein VirB8/TraJ; VirB8 family protein complement(46727..47437) Nitrosomonas eutropha C91 4271803 YP_743813.1 CDS Neut_2633 NC_008342.1 47799 48965 R PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: bbr:BB0488 plasmid-related membrane protein; TrbL/VirB6 plasmid conjugal transfer protein complement(47799..48965) Nitrosomonas eutropha C91 4271804 YP_743814.1 CDS Neut_2634 NC_008342.1 48977 49306 R hypothetical protein complement(48977..49306) Nitrosomonas eutropha C91 4271805 YP_743815.1 CDS Neut_2635 NC_008342.1 49303 50016 R PFAM: type IV secretion system family protein; KEGG: xoo:XOO0603 TraF protein; type IV secretion system family protein complement(49303..50016) Nitrosomonas eutropha C91 4271806 YP_743816.1 CDS Neut_2636 NC_008342.1 50013 52433 R TIGRFAM: type IV secretion/conjugal transfer ATPase, VirB4 family; PFAM: CagE, TrbE, VirB component of type IV transporter system; KEGG: bxe:Bxe_A1756 putative type IV secretion system protein VirB4/TraE; type IV secretion/conjugal transfer ATPase complement(50013..52433) Nitrosomonas eutropha C91 4271807 YP_743817.1 CDS Neut_2637 NC_008342.1 52435 52755 R PFAM: type IV secretory pathway, VirB3 family protein; KEGG: bxe:Bxe_A1755 putative type IV secretion system protein VirB3/TraD; type IV secretory pathway, VirB3 family protein complement(52435..52755) Nitrosomonas eutropha C91 4271808 YP_743818.1 CDS Neut_2638 NC_008342.1 52760 53059 R KEGG: bxe:Bxe_A1754 putative type IV secretion system protein VirB2/TraC; hypothetical protein complement(52760..53059) Nitrosomonas eutropha C91 4271809 YP_743819.1 CDS Neut_2639 NC_008342.1 53052 53729 R PFAM: Lytic transglycosylase, catalytic; KEGG: bmb:BruAb2_0069 type IV secretion system protein VirB1; lytic transglycosylase, catalytic complement(53052..53729) Nitrosomonas eutropha C91 4271810 YP_743820.1 CDS Neut_2640 NC_008342.1 53981 54388 R hypothetical protein complement(53981..54388) Nitrosomonas eutropha C91 4271811 YP_743821.1 CDS Neut_2641 NC_008342.1 54381 55085 R KEGG: vfi:VFB52 hypothetical protein; hypothetical protein complement(54381..55085) Nitrosomonas eutropha C91 4271812 YP_746259.1 CDS dnaA NC_008344.1 35 1414 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 35..1414 Nitrosomonas eutropha C91 4271847 YP_746260.1 CDS Neut_0002 NC_008344.1 1619 2740 D KEGG: neu:NE0002 DNA polymerase III, beta chain; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain; DNA polymerase III subunit beta 1619..2740 Nitrosomonas eutropha C91 4271848 YP_746261.1 CDS gyrB NC_008344.1 2798 5227 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 2798..5227 Nitrosomonas eutropha C91 4271849 YP_746262.1 CDS Neut_0004 NC_008344.1 5248 5691 D PFAM: protein of unknown function DUF454; KEGG: neu:NE0004 hypothetical protein; hypothetical protein 5248..5691 Nitrosomonas eutropha C91 4273720 YP_746263.1 CDS Neut_0005 NC_008344.1 5747 6478 D TIGRFAM: Pseudouridine synthase, Rsu; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: neu:NE0005 pseudouridylate synthase; pseudouridine synthase, Rsu 5747..6478 Nitrosomonas eutropha C91 4273721 YP_746264.1 CDS Neut_0006 NC_008344.1 6914 8767 D PFAM: phage integrase family protein; KEGG: xfa:XF1718 phage-related integrase; phage integrase family protein 6914..8767 Nitrosomonas eutropha C91 4273723 YP_746265.1 CDS Neut_0007 NC_008344.1 8854 9228 D KEGG: rme:Rmet_2400 transcriptional regulator, LysR family; LysR family transcriptional regulator 8854..9228 Nitrosomonas eutropha C91 4273724 YP_746266.1 CDS Neut_0008 NC_008344.1 9722 10381 R PFAM: LysR, substrate-binding; KEGG: eba:c1A250 regulatory protein, LysR-family; LysR family transcriptional regulator complement(9722..10381) Nitrosomonas eutropha C91 4273725 YP_746267.1 CDS Neut_0009 NC_008344.1 10750 11052 D PFAM: helix-turn-helix domain protein; KEGG: eba:ebB68 hypothetical protein; XRE family transcriptional regulator protein 10750..11052 Nitrosomonas eutropha C91 4273726 YP_746268.1 CDS Neut_0010 NC_008344.1 11619 12452 R PFAM: Redoxin domain protein; KEGG: rme:Rmet_2395 thioredoxin-like protein; redoxin domain-containing protein complement(11619..12452) Nitrosomonas eutropha C91 4273727 YP_746269.1 CDS Neut_0011 NC_008344.1 12740 13648 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rme:Rmet_2400 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(12740..13648) Nitrosomonas eutropha C91 4273728 YP_746270.1 CDS Neut_0012 NC_008344.1 13786 14109 D PFAM: transposase IS3/IS911 family protein; KEGG: neu:NE0749 transposase IS911 HTH and LZ region; transposase IS3/IS911 family protein 13786..14109 Nitrosomonas eutropha C91 4273729 YP_746271.1 CDS Neut_0013 NC_008344.1 14163 15014 D PFAM: Integrase, catalytic region; KEGG: neu:NE2532 integrase, catalytic core; integrase catalytic subunit 14163..15014 Nitrosomonas eutropha C91 4273730 YP_746272.1 CDS Neut_0014 NC_008344.1 15676 17298 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: pol:Bpro_3504 multicopper oxidase, type 3; twin-arginine translocation pathway signal complement(15676..17298) Nitrosomonas eutropha C91 4273731 YP_746273.1 CDS Neut_0016 NC_008344.1 17925 18395 D PFAM: transposase, IS4 family protein; KEGG: eba:p2A101 putative transposase, fragment; transposase, IS4 family protein 17925..18395 Nitrosomonas eutropha C91 4273733 YP_746274.1 CDS Neut_0017 NC_008344.1 18615 20027 R TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: hch:HCH_03612 signal transduction histidine kinase; heavy metal sensor signal transduction histidine kinase complement(18615..20027) Nitrosomonas eutropha C91 4273734 YP_746275.1 CDS Neut_0018 NC_008344.1 20033 20716 R TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sde:Sde_1948 response regulator receiver domain protein (CheY-like); two component heavy metal response transcriptional regulator, winged helix family protein complement(20033..20716) Nitrosomonas eutropha C91 4273735 YP_746276.1 CDS Neut_0019 NC_008344.1 21102 21302 R PFAM: Heavy metal transport/detoxification protein; KEGG: atc:AGR_C_1710 hypothetical protein; heavy metal transport/detoxification protein complement(21102..21302) Nitrosomonas eutropha C91 4273736 YP_746277.1 CDS Neut_0020 NC_008344.1 21966 22937 D PFAM: glycosyl hydrolase, BNR repeat-containing protein; KEGG: pol:Bpro_1610 glycosyl hydrolase, BNR repeat; BNR repeat-containing glycosyl hydrolase 21966..22937 Nitrosomonas eutropha C91 4274270 YP_746278.1 CDS Neut_0021 NC_008344.1 23288 25171 D TIGRFAM: Twin-arginine translocation pathway signal; copper-resistance protein, CopA family; PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: rme:Rmet_6112 copper-resistance protein CopA; copper-resistance protein, CopA family protein 23288..25171 Nitrosomonas eutropha C91 4274271 YP_746279.1 CDS Neut_0023 NC_008344.1 26362 26910 D PFAM: blue (type 1) copper domain protein; KEGG: ppr:PBPRA0981 hypothetical copper tolerance protein; blue (type1) copper domain-containing protein 26362..26910 Nitrosomonas eutropha C91 4274273 YP_746280.1 CDS Neut_0024 NC_008344.1 27112 27693 D PFAM: peptidase M23B; KEGG: bpe:BP2956 hypothetical protein; peptidase M23B 27112..27693 Nitrosomonas eutropha C91 4274274 YP_746281.1 CDS Neut_0025 NC_008344.1 27775 28260 D PFAM: cytochrome c, class I; KEGG: rme:Rmet_6117 cytochrome c, class I; cytochrome c, class I 27775..28260 Nitrosomonas eutropha C91 4274275 YP_746282.1 CDS Neut_0026 NC_008344.1 28282 30666 R KEGG: pol:Bpro_1178 heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein; heavy metal translocating P-type ATPase complement(28282..30666) Nitrosomonas eutropha C91 4274276 YP_746283.1 CDS Neut_0028 NC_008344.1 32488 32724 R PFAM: MerE family protein; KEGG: sty:HCM1.160 hypothetical protein; mercury resistance protein complement(32488..32724) Nitrosomonas eutropha C91 4274278 YP_746284.1 CDS Neut_0029 NC_008344.1 32721 32966 R TIGRFAM: mercuric resistence transcriptional repressor protein MerD; SMART: regulatory protein, MerR; KEGG: sty:HCM1.159 putative mercuric resistance operon coregulator; MerR family transcriptional regulator complement(32721..32966) Nitrosomonas eutropha C91 4274279 YP_746285.1 CDS Neut_0030 NC_008344.1 32984 34687 R TIGRFAM: mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; Heavy metal transport/detoxification protein; KEGG: bxe:Bxe_C1213 putative mercuric ion reductase; mercuric reductase complement(32984..34687) Nitrosomonas eutropha C91 4274280 YP_746286.1 CDS Neut_0031 NC_008344.1 34684 34875 R KEGG: noc:Noc_2759 hypothetical protein; hypothetical protein complement(34684..34875) Nitrosomonas eutropha C91 4274281 YP_746287.1 CDS Neut_0032 NC_008344.1 34878 35153 R TIGRFAM: mercuric transport protein periplasmic component; PFAM: Heavy metal transport/detoxification protein; KEGG: rme:Rmet_6173 mercuric transport protein periplasmic component; mercuric transport periplasmic protein complement(34878..35153) Nitrosomonas eutropha C91 4274282 YP_746288.1 CDS Neut_0033 NC_008344.1 35169 35519 R PFAM: Mercuric transport protein MerT; KEGG: reu:Reut_D6497 mercuric transport protein MerT; mercuric transport protein complement(35169..35519) Nitrosomonas eutropha C91 4274283 YP_746289.1 CDS Neut_0034 NC_008344.1 35591 36067 D TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: sty:HCM1.151c putative mercuric resistance operon regulatory protein; transcriptional regulator MerR 35591..36067 Nitrosomonas eutropha C91 4274284 YP_746290.1 CDS Neut_0035 NC_008344.1 36191 36535 D KEGG: reu:Reut_B3796 protein of unknown function DUF305; hypothetical protein 36191..36535 Nitrosomonas eutropha C91 4274285 YP_746291.1 CDS Neut_0036 NC_008344.1 36832 37344 R PFAM: blue (type 1) copper domain protein; KEGG: rme:Rmet_6116 blue (type 1) copper domain; blue (type1) copper domain-containing protein complement(36832..37344) Nitrosomonas eutropha C91 4274286 YP_746292.1 CDS Neut_0037 NC_008344.1 37785 38735 R PFAM: glycosyl transferase, group 1; KEGG: bpa:BPP1711 putative transferase; group 1 glycosyl transferase complement(37785..38735) Nitrosomonas eutropha C91 4274183 YP_746293.1 CDS Neut_0038 NC_008344.1 40022 40306 D hypothetical protein 40022..40306 Nitrosomonas eutropha C91 4274184 YP_746294.1 CDS Neut_0039 NC_008344.1 40449 41783 R TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: pae:PA1438 probable two-component sensor; heavy metal sensor signal transduction histidine kinase complement(40449..41783) Nitrosomonas eutropha C91 4274185 YP_746295.1 CDS Neut_0040 NC_008344.1 41777 42472 R TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bbr:BB4471 two-component response regulator; two component heavy metal response transcriptional regulator, winged helix family protein complement(41777..42472) Nitrosomonas eutropha C91 4274186 YP_746296.1 CDS Neut_0041 NC_008344.1 42775 43797 R PFAM: glycosyl transferase, family 2; KEGG: sde:Sde_0135 glycosyl transferases-like; glycosyl transferase complement(42775..43797) Nitrosomonas eutropha C91 4274187 YP_746297.1 CDS Neut_0042 NC_008344.1 44321 44866 D PFAM: protein of unknown function DUF204; KEGG: pae:PA2910 hypothetical protein; hypothetical protein 44321..44866 Nitrosomonas eutropha C91 4274188 YP_746298.1 CDS Neut_0043 NC_008344.1 44910 45842 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: pae:PA1297 probable metal transporter; cation diffusion facilitator family transporter complement(44910..45842) Nitrosomonas eutropha C91 4274189 YP_746299.1 CDS Neut_0044 NC_008344.1 45858 46184 D PFAM: protein of unknown function DUF156; KEGG: cps:CPS_4323 hypothetical protein; hypothetical protein 45858..46184 Nitrosomonas eutropha C91 4274190 YP_746300.1 CDS Neut_0046 NC_008344.1 46787 46987 R KEGG: mfa:Mfla_1495 transposase Tn3; hypothetical protein complement(46787..46987) Nitrosomonas eutropha C91 4274192 YP_746301.1 CDS Neut_0047 NC_008344.1 47236 47448 R hypothetical protein complement(47236..47448) Nitrosomonas eutropha C91 4274193 YP_746302.1 CDS Neut_0048 NC_008344.1 47909 48595 R PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; KEGG: lpp:lpp0339 hypothetical protein; multicopper oxidase, type 2 complement(47909..48595) Nitrosomonas eutropha C91 4274194 YP_746303.1 CDS Neut_0049 NC_008344.1 49039 51375 R KEGG: pol:Bpro_1178 heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein; heavy metal translocating P-type ATPase complement(49039..51375) Nitrosomonas eutropha C91 4274195 YP_746304.1 CDS Neut_0050 NC_008344.1 51479 51895 R PFAM: protein of unknown function DUF411; KEGG: rme:Rmet_6118 protein of unknown function DUF411; hypothetical protein complement(51479..51895) Nitrosomonas eutropha C91 4274196 YP_746305.1 CDS Neut_0051 NC_008344.1 51957 52436 R KEGG: bpa:BPP1578 putative cytochrome; hypothetical protein complement(51957..52436) Nitrosomonas eutropha C91 4274197 YP_746306.1 CDS Neut_0052 NC_008344.1 52487 54751 R KEGG: bbr:BB1386 hypothetical protein; hypothetical protein complement(52487..54751) Nitrosomonas eutropha C91 4274198 YP_746307.1 CDS Neut_0053 NC_008344.1 54800 55288 R KEGG: ppu:PP5391 hypothetical protein; hypothetical protein complement(54800..55288) Nitrosomonas eutropha C91 4274199 YP_746308.1 CDS Neut_0054 NC_008344.1 55436 56182 R PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: jan:Jann_2398 cytochrome c biogenesis protein, transmembrane protein; cytochrome c biogenesis protein, transmembrane region complement(55436..56182) Nitrosomonas eutropha C91 4274200 YP_746309.1 CDS Neut_0056 NC_008344.1 56862 57719 R SMART: Tetratricopeptide domain protein; KEGG: rme:Rmet_2393 TPR repeat; hypothetical protein complement(56862..57719) Nitrosomonas eutropha C91 4274237 YP_746310.1 CDS Neut_0057 NC_008344.1 57722 58171 R PFAM: cytochrome C biogenesis protein; KEGG: rme:Rmet_2392 cytochrome c biogenesis protein; cytochrome C biogenesis protein complement(57722..58171) Nitrosomonas eutropha C91 4274238 YP_746311.1 CDS Neut_0058 NC_008344.1 58168 58692 R TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: Redoxin domain protein; KEGG: rme:Rmet_2391 periplasmic protein thiol; periplasmic protein thiol--disulfide oxidoreductase DsbE complement(58168..58692) Nitrosomonas eutropha C91 4274239 YP_746312.1 CDS Neut_0059 NC_008344.1 58689 60650 R TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: rme:Rmet_2390 cytochrome c-type biogenesis protein CcmF; cytochrome c-type biogenesis protein CcmF complement(58689..60650) Nitrosomonas eutropha C91 4274240 YP_746313.1 CDS Neut_0060 NC_008344.1 60656 61102 R PFAM: CcmE/CycJ protein; KEGG: rme:Rmet_2389 CcmE/CycJ protein; CcmE/CycJ protein complement(60656..61102) Nitrosomonas eutropha C91 4274241 YP_746314.1 CDS Neut_0061 NC_008344.1 61278 62015 R TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: rme:Rmet_2387 heme exporter protein CcmC; heme exporter protein CcmC complement(61278..62015) Nitrosomonas eutropha C91 4274242 YP_746315.1 CDS Neut_0062 NC_008344.1 62027 62710 R TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: rme:Rmet_2386 heme exporter protein CcmB; heme exporter protein CcmB complement(62027..62710) Nitrosomonas eutropha C91 4274243 YP_746316.1 CDS Neut_0063 NC_008344.1 62707 63321 R ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA complement(62707..63321) Nitrosomonas eutropha C91 4274244 YP_746317.1 CDS Neut_0064 NC_008344.1 63528 63884 R KEGG: dar:Daro_2621 hypothetical protein; hypothetical protein complement(63528..63884) Nitrosomonas eutropha C91 4274245 YP_746318.1 CDS Neut_0065 NC_008344.1 63958 64845 R PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: bja:bll8020 putative ubiquinone/menaquinone biosynthesis methyltransferase; methyltransferase type 11 complement(63958..64845) Nitrosomonas eutropha C91 4274246 YP_746319.1 CDS Neut_0066 NC_008344.1 64889 65938 R TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: ppu:PP5392 hypothetical protein; hypothetical protein complement(64889..65938) Nitrosomonas eutropha C91 4274247 YP_746320.1 CDS Neut_0067 NC_008344.1 66341 68854 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: xcv:XCV2336 copper-translocating P-type ATPase; heavy metal translocating P-type ATPase 66341..68854 Nitrosomonas eutropha C91 4274248 YP_746321.1 CDS Neut_0068 NC_008344.1 68919 69281 D SMART: regulatory protein, MerR; KEGG: xcv:XCV2335 transcriptional regulator, MerR family; MerR family transcriptional regulator 68919..69281 Nitrosomonas eutropha C91 4274249 YP_746322.1 CDS Neut_0069 NC_008344.1 69328 71193 R PFAM: protein of unknown function DUF1528; Relaxase; KEGG: xfa:XF1753 hypothetical protein; relaxase complement(69328..71193) Nitrosomonas eutropha C91 4274250 YP_746323.1 CDS Neut_0070 NC_008344.1 71463 71696 D PFAM: SpoVT/AbrB domain protein; KEGG: xac:XAC2188 cell growth regulatory protein; transcriptional regulator/antitoxin MazE 71463..71696 Nitrosomonas eutropha C91 4274251 YP_746324.1 CDS Neut_0071 NC_008344.1 71683 72099 D PFAM: PilT protein domain protein; KEGG: xac:XAC2187 hypothetical protein; PilT domain-containing protein 71683..72099 Nitrosomonas eutropha C91 4274252 YP_746325.1 CDS Neut_0072 NC_008344.1 72122 72487 D KEGG: xcv:XCV2359 hypothetical protein; hypothetical protein 72122..72487 Nitrosomonas eutropha C91 4272142 YP_746326.1 CDS Neut_0073 NC_008344.1 72484 73989 R KEGG: xcv:XCV2360 hypothetical protein; hypothetical protein complement(72484..73989) Nitrosomonas eutropha C91 4272143 YP_746327.1 CDS Neut_0074 NC_008344.1 74005 74349 R KEGG: xcb:XC_2025 hypothetical protein; hypothetical protein complement(74005..74349) Nitrosomonas eutropha C91 4272144 YP_746328.1 CDS Neut_0075 NC_008344.1 74346 75743 R KEGG: xcb:XC_2026 hypothetical protein; hypothetical protein complement(74346..75743) Nitrosomonas eutropha C91 4272145 YP_746329.1 CDS Neut_0076 NC_008344.1 75762 76694 R PFAM: protein of unknown function DUF1527; KEGG: rme:Rmet_2357 protein of unknown function DUF1527; hypothetical protein complement(75762..76694) Nitrosomonas eutropha C91 4272146 YP_746330.1 CDS Neut_0077 NC_008344.1 76691 77122 R PFAM: protein of unknown function DUF1525; KEGG: bxe:Bxe_A1181 hypothetical protein; hypothetical protein complement(76691..77122) Nitrosomonas eutropha C91 4272147 YP_746331.1 CDS Neut_0078 NC_008344.1 77282 77851 R hypothetical protein complement(77282..77851) Nitrosomonas eutropha C91 4272148 YP_746332.1 CDS Neut_0079 NC_008344.1 77979 78482 R PFAM: DNA repair protein RadC; KEGG: eba:ebA2402 DNA repair protein similar to RadC-family; DNA repair protein RadC complement(77979..78482) Nitrosomonas eutropha C91 4272149 YP_746333.1 CDS Neut_0080 NC_008344.1 78680 79432 R KEGG: xcv:XCV2366 hypothetical protein; hypothetical protein complement(78680..79432) Nitrosomonas eutropha C91 4272150 YP_746334.1 CDS Neut_0081 NC_008344.1 79907 80566 R PFAM: DSBA oxidoreductase; KEGG: rfr:Rfer_0414 DsbA oxidoreductase; DSBA oxidoreductase complement(79907..80566) Nitrosomonas eutropha C91 4272151 YP_746335.1 CDS Neut_0082 NC_008344.1 80563 81012 R PFAM: Disulphide bond formation protein DsbB; KEGG: rfr:Rfer_0415 disulphide bond formation protein DsbB; disulfide bond formation protein DsbB complement(80563..81012) Nitrosomonas eutropha C91 4272152 YP_746336.1 CDS Neut_0083 NC_008344.1 81058 81552 R PFAM: protein of unknown function DUF461; KEGG: nha:Nham_2200 protein of unknown function DUF461; hypothetical protein complement(81058..81552) Nitrosomonas eutropha C91 4272153 YP_746337.1 CDS Neut_0084 NC_008344.1 81615 83741 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: nwi:Nwi_3134 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase complement(81615..83741) Nitrosomonas eutropha C91 4272154 YP_746338.1 CDS Neut_0085 NC_008344.1 83808 84227 D PFAM: regulatory protein, MerR; KEGG: nha:Nham_3726 transcriptional regulator, MerR family; MerR family transcriptional regulator 83808..84227 Nitrosomonas eutropha C91 4272155 YP_746339.1 CDS Neut_0086 NC_008344.1 84539 87430 R KEGG: bxe:Bxe_A1184 hypothetical protein; hypothetical protein complement(84539..87430) Nitrosomonas eutropha C91 4272156 YP_746340.1 CDS Neut_0087 NC_008344.1 87430 87864 R KEGG: rme:Rmet_2352 putative secreted protein; hypothetical protein complement(87430..87864) Nitrosomonas eutropha C91 4272157 YP_746341.1 CDS Neut_0088 NC_008344.1 87845 89242 R KEGG: rme:Rmet_2351 putative secreted protein; hypothetical protein complement(87845..89242) Nitrosomonas eutropha C91 4272158 YP_746342.1 CDS Neut_0089 NC_008344.1 89232 90134 R KEGG: xcv:XCV2370 putative secreted protein; hypothetical protein complement(89232..90134) Nitrosomonas eutropha C91 4272159 YP_746343.1 CDS Neut_0090 NC_008344.1 90131 90811 R KEGG: rme:Rmet_2349 putative secreted protein; hypothetical protein complement(90131..90811) Nitrosomonas eutropha C91 4274113 YP_746344.1 CDS Neut_0091 NC_008344.1 90808 91206 R KEGG: xcv:XCV2372 hypothetical protein; hypothetical protein complement(90808..91206) Nitrosomonas eutropha C91 4274114 YP_746345.1 CDS Neut_0092 NC_008344.1 91218 91577 R KEGG: rme:Rmet_2347 hypothetical protein; hypothetical protein complement(91218..91577) Nitrosomonas eutropha C91 4274115 YP_746346.1 CDS Neut_0093 NC_008344.1 91592 91825 R KEGG: xcv:XCV2374 hypothetical protein; hypothetical protein complement(91592..91825) Nitrosomonas eutropha C91 4274116 YP_746347.1 CDS Neut_0094 NC_008344.1 91822 92193 R KEGG: rme:Rmet_2345 plasmid conserved hypothetical protein, RAQPRD; hypothetical protein complement(91822..92193) Nitrosomonas eutropha C91 4274117 YP_746348.1 CDS Neut_0095 NC_008344.1 92367 92621 D KEGG: dps:DP2049 hypothetical protein; hypothetical protein 92367..92621 Nitrosomonas eutropha C91 4274118 YP_746349.1 CDS Neut_0096 NC_008344.1 92749 93477 D KEGG: dps:DP2050 hypothetical protein; hypothetical protein 92749..93477 Nitrosomonas eutropha C91 4274119 YP_746350.1 CDS Neut_0097 NC_008344.1 93530 94279 R KEGG: xcv:XCV2376 hypothetical protein; hypothetical protein complement(93530..94279) Nitrosomonas eutropha C91 4274120 YP_746351.1 CDS Neut_0098 NC_008344.1 94276 96450 R KEGG: bxe:Bxe_A1195 hypothetical protein; hypothetical protein complement(94276..96450) Nitrosomonas eutropha C91 4274121 YP_746352.1 CDS Neut_0099 NC_008344.1 96455 96997 R KEGG: bxe:Bxe_A1196 hypothetical protein; hypothetical protein complement(96455..96997) Nitrosomonas eutropha C91 4274122 YP_746353.1 CDS Neut_0100 NC_008344.1 96994 97584 R PFAM: Lytic transglycosylase, catalytic; KEGG: bxe:Bxe_A1197 hypothetical protein; lytic transglycosylase, catalytic complement(96994..97584) Nitrosomonas eutropha C91 4274123 YP_746354.1 CDS Neut_0101 NC_008344.1 97566 98294 R KEGG: bxe:Bxe_A1198 hypothetical protein; hypothetical protein complement(97566..98294) Nitrosomonas eutropha C91 4274124 YP_746355.1 CDS Neut_0102 NC_008344.1 98309 98959 R KEGG: xcb:XC_2044 hypothetical protein; hypothetical protein complement(98309..98959) Nitrosomonas eutropha C91 4274125 YP_746356.1 CDS Neut_0103 NC_008344.1 98956 99537 R KEGG: bxe:Bxe_A1200 hypothetical protein; hypothetical protein complement(98956..99537) Nitrosomonas eutropha C91 4274126 YP_746357.1 CDS Neut_0104 NC_008344.1 100122 102398 R PFAM: helicase domain protein; SMART: DEAD/DEAH box helicase domain protein; KEGG: xcv:XCV2386 putative helicase; helicase domain-containing protein complement(100122..102398) Nitrosomonas eutropha C91 4274127 YP_746358.1 CDS Neut_0105 NC_008344.1 102502 102813 R KEGG: eba:ebB75 hypothetical protein; hypothetical protein complement(102502..102813) Nitrosomonas eutropha C91 4274128 YP_746359.1 CDS Neut_0106 NC_008344.1 102910 104019 R KEGG: eba:ebA2433 conserved hypothetical plasmid protein; hypothetical protein complement(102910..104019) Nitrosomonas eutropha C91 4274129 YP_746360.1 CDS Neut_0107 NC_008344.1 104094 104753 R KEGG: bxe:Bxe_A1204 hypothetical protein; hypothetical protein complement(104094..104753) Nitrosomonas eutropha C91 4271934 YP_746361.1 CDS Neut_0108 NC_008344.1 104918 105259 R KEGG: dar:Daro_2557 hypothetical protein; hypothetical protein complement(104918..105259) Nitrosomonas eutropha C91 4271935 YP_746362.1 CDS Neut_0109 NC_008344.1 105364 105711 R KEGG: xcb:XC_2051 plasmid-related protein; plasmid-like protein complement(105364..105711) Nitrosomonas eutropha C91 4271936 YP_746363.1 CDS Neut_0110 NC_008344.1 105808 106479 R KEGG: rme:Rmet_2322 hypothetical protein; hypothetical protein complement(105808..106479) Nitrosomonas eutropha C91 4271937 YP_746364.1 CDS Neut_0111 NC_008344.1 106587 107501 R KEGG: rme:Rmet_2320 hypothetical protein; hypothetical protein complement(106587..107501) Nitrosomonas eutropha C91 4271938 YP_746365.1 CDS Neut_0112 NC_008344.1 107866 108681 R KEGG: eba:ebA2454 hypothetical protein; hypothetical protein complement(107866..108681) Nitrosomonas eutropha C91 4271939 YP_746366.1 CDS Neut_0113 NC_008344.1 108970 109686 R KEGG: bxe:Bxe_A1217 hypothetical protein; hypothetical protein complement(108970..109686) Nitrosomonas eutropha C91 4271940 YP_746367.1 CDS Neut_0114 NC_008344.1 109887 110450 R KEGG: bxe:Bxe_A1221 hypothetical protein; hypothetical protein complement(109887..110450) Nitrosomonas eutropha C91 4271941 YP_746368.1 CDS Neut_0115 NC_008344.1 110695 112188 R TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: bxe:Bxe_A1222 C-5 cytosine-specific DNA methylase; DNA-cytosine methyltransferase complement(110695..112188) Nitrosomonas eutropha C91 4271942 YP_746369.1 CDS Neut_0116 NC_008344.1 112738 114753 R KEGG: rme:Rmet_2298 DNA topoisomerase III; TIGRFAM: DNA topoisomerase III; PFAM: TOPRIM domain protein; DNA topoisomerase, type IA, central domain protein; DNA topoisomerase, type IA, zn finger domain protein; SMART: DNA topoisomerase I, ATP-binding; DNA topoisomerase I, DNA-binding; Toprim sub domain protein; DNA topoisomerase III complement(112738..114753) Nitrosomonas eutropha C91 4271943 YP_746370.1 CDS Neut_0117 NC_008344.1 115039 115440 R binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein complement(115039..115440) Nitrosomonas eutropha C91 4271944 YP_746371.1 CDS Neut_0118 NC_008344.1 115498 116025 R KEGG: xcv:XCV2408 hypothetical protein; hypothetical protein complement(115498..116025) Nitrosomonas eutropha C91 4271945 YP_746372.1 CDS Neut_0119 NC_008344.1 116022 116822 R KEGG: rme:Rmet_2295 hypothetical protein; hypothetical protein complement(116022..116822) Nitrosomonas eutropha C91 4271946 YP_746373.1 CDS Neut_0120 NC_008344.1 117052 118227 R KEGG: rme:Rmet_2294 hypothetical protein; hypothetical protein complement(117052..118227) Nitrosomonas eutropha C91 4271947 YP_746374.1 CDS Neut_0121 NC_008344.1 118231 118791 R KEGG: xfa:XF1782 hypothetical protein; hypothetical protein complement(118231..118791) Nitrosomonas eutropha C91 4271948 YP_746375.1 CDS Neut_0122 NC_008344.1 118807 120450 R KEGG: rme:Rmet_2292 hypothetical protein; hypothetical protein complement(118807..120450) Nitrosomonas eutropha C91 4271949 YP_746376.1 CDS Neut_0123 NC_008344.1 120452 120712 R KEGG: eba:ebA2468 hypothetical protein; hypothetical protein complement(120452..120712) Nitrosomonas eutropha C91 4271950 YP_746377.1 CDS Neut_0124 NC_008344.1 120705 121565 R PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: bxe:Bxe_A1230 putative chromosome partitioning protein ParA; cobyrinic acid a,c-diamide synthase complement(120705..121565) Nitrosomonas eutropha C91 4271951 YP_746378.1 CDS Neut_0125 NC_008344.1 121606 121818 R PFAM: Prophage CP4-57 regulatory; KEGG: xcv:XCV2415 putative regulatory protein, AlpA family; phage transcriptional regulator AlpA complement(121606..121818) Nitrosomonas eutropha C91 4272127 YP_746379.1 CDS Neut_0126 NC_008344.1 121936 122685 R KEGG: xfa:XF1787 hypothetical protein; hypothetical protein complement(121936..122685) Nitrosomonas eutropha C91 4272128 YP_746380.1 CDS Neut_0127 NC_008344.1 123841 124164 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: neu:NE0006 7Fe ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding domain; 4Fe-4S ferredoxin 123841..124164 Nitrosomonas eutropha C91 4272131 YP_746381.1 CDS Neut_0128 NC_008344.1 124236 124598 D KEGG: neu:NE0007 hypothetical protein; hypothetical protein 124236..124598 Nitrosomonas eutropha C91 4272132 YP_746382.1 CDS Neut_0129 NC_008344.1 124618 128082 R TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; KEGG: neu:NE0008 mfd: transcription-repair coupling factor; transcription-repair coupling factor complement(124618..128082) Nitrosomonas eutropha C91 4272133 YP_746383.1 CDS Neut_0130 NC_008344.1 128109 129389 R PFAM: MgtC/SapB transporter; KEGG: neu:NE0009 MgtC family; MgtC/SapB transporter complement(128109..129389) Nitrosomonas eutropha C91 4272134 YP_746384.1 CDS Neut_0131 NC_008344.1 129382 131151 R TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: neu:NE0010 single-stranded-DNA-specific exonuclease; single-stranded-DNA-specific exonuclease RecJ complement(129382..131151) Nitrosomonas eutropha C91 4272135 YP_746385.1 CDS Neut_0132 NC_008344.1 131337 131933 R KEGG: neu:NE0011 cytochrome P460 precursor; cytochrome P460 complement(131337..131933) Nitrosomonas eutropha C91 4272136 YP_746386.1 CDS Neut_0133 NC_008344.1 132021 132941 R PFAM: Indole-3-glycerol phosphate synthase; KEGG: neu:NE0012 indole-3-glycerol phosphate synthase; Indole-3-glycerol phosphate synthase complement(132021..132941) Nitrosomonas eutropha C91 4272137 YP_746387.1 CDS trpD NC_008344.1 132952 133977 R Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase complement(132952..133977) Nitrosomonas eutropha C91 4272138 YP_746388.1 CDS Neut_0135 NC_008344.1 133974 134576 R TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II complement(133974..134576) Nitrosomonas eutropha C91 4272139 YP_746389.1 CDS Neut_0136 NC_008344.1 134703 136202 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: neu:NE0015 sensory transduction histidine kinases; periplasmic sensor signal transduction histidine kinase 134703..136202 Nitrosomonas eutropha C91 4272140 YP_746390.1 CDS Neut_0137 NC_008344.1 136199 136738 D KEGG: neu:NE0016 hypothetical protein; hypothetical protein 136199..136738 Nitrosomonas eutropha C91 4272141 YP_746391.1 CDS Neut_0138 NC_008344.1 136755 138122 D PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: neu:NE0017 putative transcriptional regulator of two-component regulator protein; Fis family two component sigma-54-specific transcriptional regulator 136755..138122 Nitrosomonas eutropha C91 4272229 YP_746392.1 CDS Neut_0139 NC_008344.1 138131 139477 R PFAM: PDZ/DHR/GLGF domain protein; KEGG: neu:NE0018 PDZ domain (also known as DHR or GLGF); PDZ/DHR/GLGF domain-containing protein complement(138131..139477) Nitrosomonas eutropha C91 4272230 YP_746393.1 CDS Neut_0140 NC_008344.1 139455 143357 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase complement(139455..143357) Nitrosomonas eutropha C91 4272231 YP_746394.1 CDS Neut_0141 NC_008344.1 143602 145170 D KEGG: gme:Gmet_1647 hypothetical protein; hypothetical protein 143602..145170 Nitrosomonas eutropha C91 4272232 YP_746395.1 CDS Neut_0142 NC_008344.1 145197 145409 D KEGG: pol:Bpro_4795 hypothetical protein; hypothetical protein 145197..145409 Nitrosomonas eutropha C91 4272233 YP_746396.1 CDS Neut_0143 NC_008344.1 145894 146013 R KEGG: neu:NE1182 helix-turn-helix protein, CopG family; helix-turn-helix protein, CopG family protein complement(145894..146013) Nitrosomonas eutropha C91 4272234 YP_746397.1 CDS Neut_0144 NC_008344.1 146297 146731 D PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: nmu:Nmul_A2604 glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein 146297..146731 Nitrosomonas eutropha C91 4272235 YP_746398.1 CDS Neut_0145 NC_008344.1 146762 148321 D TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family N-terminal domain protein; KEGG: neu:NE0020 possible sugar kinase; carbohydrate kinase 146762..148321 Nitrosomonas eutropha C91 4272236 YP_746399.1 CDS Neut_0146 NC_008344.1 148745 149563 D PFAM: ABC-2 type transporter; KEGG: neu:NE0472 ABC 2 transport system integral membrane protein; ABC transporter 148745..149563 Nitrosomonas eutropha C91 4272237 YP_746400.1 CDS Neut_0147 NC_008344.1 149673 149915 D hypothetical protein 149673..149915 Nitrosomonas eutropha C91 4272238 YP_746401.1 CDS Neut_0148 NC_008344.1 150090 150644 D KEGG: tdn:Tmden_0596 hypothetical protein; hypothetical protein 150090..150644 Nitrosomonas eutropha C91 4272239 YP_746402.1 CDS Neut_0149 NC_008344.1 151086 152135 D KEGG: neu:NE1223 putative transposase; transposase 151086..152135 Nitrosomonas eutropha C91 4272240 YP_746403.1 CDS Neut_0150 NC_008344.1 152611 152916 R TIGRFAM: addiction module antidote protein, HigA family; KEGG: neu:NE0481 helix-turn-helix motif; XRE family plasmid maintenance system antidote protein complement(152611..152916) Nitrosomonas eutropha C91 4272241 YP_746404.1 CDS Neut_0151 NC_008344.1 152926 153213 R PFAM: plasmid maintenance system killer; KEGG: neu:NE0482 putative proteic killer suppression protein; plasmid maintenance system killer protein complement(152926..153213) Nitrosomonas eutropha C91 4272242 YP_746405.1 CDS Neut_0152 NC_008344.1 153294 154607 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: neu:NE0483 probable ATPase component ABC-type polysaccharide/polyol phosphate transport system; ABC transporter-like protein 153294..154607 Nitrosomonas eutropha C91 4272243 YP_746406.1 CDS Neut_0153 NC_008344.1 154618 158178 D KEGG: cch:Cag_1481 glycosyltransferase-like; hypothetical protein 154618..158178 Nitrosomonas eutropha C91 4272244 YP_746407.1 CDS Neut_0154 NC_008344.1 158185 159237 D PFAM: Methyltransferase type 11; KEGG: bca:BCE0301 hypothetical protein; methyltransferase type 11 158185..159237 Nitrosomonas eutropha C91 4272245 YP_746408.1 CDS Neut_0155 NC_008344.1 159261 160127 D PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: bpm:BURPS1710b_3295 WcbJ; NAD-dependent epimerase/dehydratase 159261..160127 Nitrosomonas eutropha C91 4272246 YP_746409.1 CDS Neut_0156 NC_008344.1 160144 161175 D PFAM: NAD-dependent epimerase/dehydratase; polysaccharide biosynthesis protein CapD; Male sterility C-terminal domain; KEGG: cjr:CJE1611 GDP-mannose 4,6-dehydratase; NAD-dependent epimerase/dehydratase 160144..161175 Nitrosomonas eutropha C91 4271850 YP_746410.1 CDS Neut_0157 NC_008344.1 161224 162255 D PFAM: GHMP kinase; GHMP kinase, C terminal domain protein; KEGG: bpm:BURPS1710b_3292 WcbL; GHMP kinase 161224..162255 Nitrosomonas eutropha C91 4271851 YP_746411.1 CDS Neut_0158 NC_008344.1 162252 162836 D catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 162252..162836 Nitrosomonas eutropha C91 4271852 YP_746412.1 CDS Neut_0159 NC_008344.1 162836 163522 D PFAM: Nucleotidyl transferase; KEGG: bpm:BURPS1710b_3290 WcbM; nucleotidyl transferase 162836..163522 Nitrosomonas eutropha C91 4271853 YP_746413.1 CDS Neut_0160 NC_008344.1 163526 164083 D TIGRFAM: D,D-heptose 1,7-bisphosphate phosphatase; histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: bps:BPSL2793 putative D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase; D,D-heptose 1,7-bisphosphate phosphatase 163526..164083 Nitrosomonas eutropha C91 4271854 YP_746414.1 CDS Neut_0161 NC_008344.1 164132 165004 D KEGG: noc:Noc_0060 ATP-binding region, ATPase-like; ATPase-like ATP-binding protein 164132..165004 Nitrosomonas eutropha C91 4271855 YP_746415.1 CDS Neut_0162 NC_008344.1 165022 165381 D KEGG: noc:Noc_0061 hypothetical protein; hypothetical protein 165022..165381 Nitrosomonas eutropha C91 4271856 YP_746416.1 CDS Neut_0163 NC_008344.1 165383 165922 D PFAM: PilT protein domain protein; KEGG: noc:Noc_0062 PilT-like protein; PilT domain-containing protein 165383..165922 Nitrosomonas eutropha C91 4271857 YP_746417.1 CDS Neut_0164 NC_008344.1 165948 167645 R PFAM: adenylylsulfate kinase; KEGG: pfl:PFL_5482 sulfate adenylytransferase, large subunit/adenylylsulfate kinase; sulfate adenylyltransferase complement(165948..167645) Nitrosomonas eutropha C91 4271858 YP_746418.1 CDS Neut_0165 NC_008344.1 167783 168601 D TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: ilo:IL0573 3'-phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase; 3'(2'),5'-bisphosphate nucleotidase 167783..168601 Nitrosomonas eutropha C91 4271859 YP_746419.1 CDS Neut_0166 NC_008344.1 168623 169567 D PFAM: glycosyl transferase, family 2; KEGG: pfl:PFL_5496 glycosyl transferase, group 2 family protein; glycosyl transferase 168623..169567 Nitrosomonas eutropha C91 4271860 YP_746420.1 CDS Neut_0167 NC_008344.1 169933 170250 R TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: neu:NE0490 helix-turn-helix motif; XRE family plasmid maintenance system antidote protein complement(169933..170250) Nitrosomonas eutropha C91 4271861 YP_746421.1 CDS Neut_0168 NC_008344.1 170263 170586 R PFAM: plasmid maintenance system killer; KEGG: neu:NE0491 hypothetical protein; plasmid maintenance system killer protein complement(170263..170586) Nitrosomonas eutropha C91 4271862 YP_746422.1 CDS Neut_0169 NC_008344.1 170725 171141 D KEGG: pfl:PFL_5496 glycosyl transferase, group 2 family protein; hypothetical protein 170725..171141 Nitrosomonas eutropha C91 4271863 YP_746423.1 CDS Neut_0170 NC_008344.1 171156 171395 R KEGG: sgl:SG2070 transposase; transposase complement(171156..171395) Nitrosomonas eutropha C91 4271864 YP_746424.1 CDS Neut_0172 NC_008344.1 172544 172957 D TIGRFAM: nucleotidyltransferase substrate binding protein, HI0074 family; KEGG: lpf:lpl2847 hypothetical protein; nucleotidyltransferase substrate binding protein 172544..172957 Nitrosomonas eutropha C91 4271866 YP_746425.1 CDS Neut_0173 NC_008344.1 172959 173324 D PFAM: DNA polymerase, beta domain protein region; KEGG: lpf:lpl2848 hypothetical protein; DNA polymerase subunit beta 172959..173324 Nitrosomonas eutropha C91 4272074 YP_746426.1 CDS Neut_0174 NC_008344.1 173373 173642 D KEGG: neu:NE1553 possible transposase; transposase 173373..173642 Nitrosomonas eutropha C91 4272075 YP_746427.1 CDS Neut_0176 NC_008344.1 174098 174361 R hypothetical protein complement(174098..174361) Nitrosomonas eutropha C91 4272077 YP_746428.1 CDS Neut_0177 NC_008344.1 174339 175370 R KEGG: neu:NE0492 putative transposase; transposase complement(174339..175370) Nitrosomonas eutropha C91 4272078 YP_746429.1 CDS Neut_0178 NC_008344.1 175348 175683 R KEGG: neu:NE0494 hypothetical protein; hypothetical protein complement(175348..175683) Nitrosomonas eutropha C91 4272079 YP_746430.1 CDS Neut_0179 NC_008344.1 175920 176642 D PFAM: glycosyl transferase, family 2; KEGG: neu:NE0499 glycosyl transferase, family 2; glycosyl transferase 175920..176642 Nitrosomonas eutropha C91 4272080 YP_746431.1 CDS Neut_0180 NC_008344.1 176692 177708 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: pol:Bpro_3986 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(176692..177708) Nitrosomonas eutropha C91 4272081 YP_746432.1 CDS Neut_0181 NC_008344.1 177979 181374 R PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; sterile alpha motif SAM protein; Sterile alpha motif homology 2; Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: neu:NE0090 guanylate cyclase:TPR repeat:SAM domain (sterile alpha motif); adenylate/guanylate cyclase complement(177979..181374) Nitrosomonas eutropha C91 4272082 YP_746433.1 CDS Neut_0182 NC_008344.1 181673 183757 R PFAM: ABC-1 domain protein; UspA domain protein; KEGG: neu:NE0091 universal stress protein (Usp):ABC1 family; hypothetical protein complement(181673..183757) Nitrosomonas eutropha C91 4272083 YP_746434.1 CDS Neut_0183 NC_008344.1 183991 184728 D hypothetical protein 183991..184728 Nitrosomonas eutropha C91 4272084 YP_746435.1 CDS Neut_0184 NC_008344.1 184901 185335 D KEGG: cch:Cag_0844 hypothetical protein; hypothetical protein 184901..185335 Nitrosomonas eutropha C91 4272085 YP_746436.1 CDS Neut_0185 NC_008344.1 185388 185948 D PFAM: sugar transferase; KEGG: neu:NE0501 bacterial sugar transferase; sugar transferase 185388..185948 Nitrosomonas eutropha C91 4272086 YP_746437.1 CDS Neut_0186 NC_008344.1 185958 187940 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: neu:NE0502 polysaccharide biosynthesis protein CapD type; polysaccharide biosynthesis protein CapD 185958..187940 Nitrosomonas eutropha C91 4272087 YP_746438.1 CDS Neut_0187 NC_008344.1 187959 188546 R PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: neu:NE0047 cytidine and deoxycytidylate deaminase zinc-binding region; zinc-binding CMP/dCMP deaminase complement(187959..188546) Nitrosomonas eutropha C91 4272088 YP_746439.1 CDS Neut_0188 NC_008344.1 188750 189610 D With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA 188750..189610 Nitrosomonas eutropha C91 4272089 YP_746440.1 CDS motB NC_008344.1 189653 190597 D with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB 189653..190597 Nitrosomonas eutropha C91 4272090 YP_746441.1 CDS Neut_0190 NC_008344.1 190572 191369 D KEGG: neu:NE0044 hypothetical protein; hypothetical protein 190572..191369 Nitrosomonas eutropha C91 4272091 YP_746442.1 CDS cysS NC_008344.1 191382 192785 R catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase complement(191382..192785) Nitrosomonas eutropha C91 4272432 YP_746443.1 CDS Neut_0192 NC_008344.1 192907 193548 D PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: neu:NE0042 cyclophilin-type peptidyl-prolyl cis-trans isomerase; cyclophilin type peptidyl-prolyl cis-trans isomerase 192907..193548 Nitrosomonas eutropha C91 4272433 YP_746444.1 CDS Neut_0193 NC_008344.1 193567 194058 D PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: neu:NE0041 cyclophilin-type peptidyl-prolyl cis-trans isomerase; cyclophilin type peptidyl-prolyl cis-trans isomerase 193567..194058 Nitrosomonas eutropha C91 4272434 YP_746445.1 CDS Neut_0194 NC_008344.1 194136 194588 D SMART: Rhodanese domain protein; KEGG: neu:NE0040 rhodanese/cdc25 fold; rhodanese domain-containing protein 194136..194588 Nitrosomonas eutropha C91 4272435 YP_746446.1 CDS Neut_0195 NC_008344.1 194603 195424 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase complement(194603..195424) Nitrosomonas eutropha C91 4272436 YP_746447.1 CDS Neut_0196 NC_008344.1 195472 197370 R required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC complement(195472..197370) Nitrosomonas eutropha C91 4272437 YP_746448.1 CDS Neut_0197 NC_008344.1 197576 198232 D PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: neu:NE0037 protein-L-isoaspartate O-methyltransferase; protein-L-isoaspartate(D-aspartate) O-methyltransferase 197576..198232 Nitrosomonas eutropha C91 4272438 YP_746449.1 CDS Neut_0198 NC_008344.1 198335 199657 D TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: neu:NE0036 outer membrane efflux protein; type I secretion outer membrane protein, TolC family protein 198335..199657 Nitrosomonas eutropha C91 4272439 YP_746450.1 CDS Neut_0199 NC_008344.1 199720 202173 R KEGG: neu:NE0035 putative ATP-dependent protease La, putative; ATP-dependent protease La complement(199720..202173) Nitrosomonas eutropha C91 4272440 YP_746451.1 CDS Neut_0200 NC_008344.1 202719 203933 R PFAM: aminotransferase, class V; KEGG: neu:NE0034 aminotransferase class-V; alanine--glyoxylate transaminase complement(202719..203933) Nitrosomonas eutropha C91 4272441 YP_746452.1 CDS Neut_0201 NC_008344.1 204252 206675 R KEGG: neu:NE0033 ATP-dependent protease la protein; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATP-dependent protease La complement(204252..206675) Nitrosomonas eutropha C91 4272442 YP_746453.1 CDS clpX NC_008344.1 206781 208064 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(206781..208064) Nitrosomonas eutropha C91 4272443 YP_746454.1 CDS clpP NC_008344.1 208124 208768 R hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit complement(208124..208768) Nitrosomonas eutropha C91 4272444 YP_746455.1 CDS tig NC_008344.1 208752 210068 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(208752..210068) Nitrosomonas eutropha C91 4272445 YP_746456.1 CDS Neut_0205 NC_008344.1 210402 211199 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: neu:NE0029 short-chain dehydrogenase/reductase (SDR) superfamily; short-chain dehydrogenase/reductase SDR complement(210402..211199) Nitrosomonas eutropha C91 4272447 YP_746457.1 CDS groEL NC_008344.1 211268 212911 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL complement(211268..212911) Nitrosomonas eutropha C91 4271916 YP_746458.1 CDS groES NC_008344.1 212951 213241 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(212951..213241) Nitrosomonas eutropha C91 4271917 YP_746459.1 CDS Neut_0208 NC_008344.1 213407 214717 D TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: neu:NE0026 aminotransferase class-III pyridoxal-phosphate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 213407..214717 Nitrosomonas eutropha C91 4271918 YP_746460.1 CDS Neut_0209 NC_008344.1 214724 216130 D PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: neu:NE0025 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein 214724..216130 Nitrosomonas eutropha C91 4271919 YP_746461.1 CDS Neut_0210 NC_008344.1 216229 216537 R KEGG: neu:NE0024 cytochrome c, class I; cytochrome c, class I complement(216229..216537) Nitrosomonas eutropha C91 4271920 YP_746462.1 CDS Neut_0211 NC_008344.1 216699 217463 D KEGG: neu:NE0023 exodeoxyribonuclease III:exodeoxyribonuclease III xth; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III Xth 216699..217463 Nitrosomonas eutropha C91 4271921 YP_746463.1 CDS Neut_0212 NC_008344.1 217510 218622 D TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; KEGG: neu:NE0022 alanine dehydrogenase; alanine dehydrogenase 217510..218622 Nitrosomonas eutropha C91 4271922 YP_746464.1 CDS Neut_0213 NC_008344.1 218760 219281 R PFAM: CreA family protein; KEGG: neu:NE0021 putative CreA protein; CreA family protein complement(218760..219281) Nitrosomonas eutropha C91 4271923 YP_746465.1 CDS Neut_0214 NC_008344.1 219416 220588 R PFAM: major facilitator superfamily MFS_1; KEGG: neu:NE2492 general substrate transporters; major facilitator superfamily transporter complement(219416..220588) Nitrosomonas eutropha C91 4271924 YP_746466.1 CDS Neut_0215 NC_008344.1 220617 221195 R PFAM: protein of unknown function UPF0016; KEGG: neu:NE2493 hypothetical protein; hypothetical protein complement(220617..221195) Nitrosomonas eutropha C91 4271925 YP_746467.1 CDS Neut_0216 NC_008344.1 221409 221879 R PFAM: transposase, IS4 family protein; KEGG: eba:p2A101 putative transposase, fragment; transposase, IS4 family protein complement(221409..221879) Nitrosomonas eutropha C91 4271926 YP_746468.1 CDS Neut_0218 NC_008344.1 222829 223611 D PFAM: class II aldolase/adducin family protein; KEGG: neu:NE0048 hypothetical protein; class II aldolase/adducin domain-containing protein 222829..223611 Nitrosomonas eutropha C91 4271928 YP_746469.1 CDS Neut_0219 NC_008344.1 223617 227282 D KEGG: neu:NE0049 sensory transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor hybrid histidine kinase 223617..227282 Nitrosomonas eutropha C91 4271929 YP_746470.1 CDS Neut_0220 NC_008344.1 227300 228493 D KEGG: neu:NE0050 ATP-citrate lyase/succinyl-CoA ligases:ATP-grasp domain; TIGRFAM: succinyl-CoA synthetase, beta subunit; PFAM: ATP-citrate lyase/succinyl-CoA ligase; ATP-grasp domain protein; succinyl-CoA synthetase subunit beta 227300..228493 Nitrosomonas eutropha C91 4271930 YP_746471.1 CDS Neut_0221 NC_008344.1 228497 229372 D Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 228497..229372 Nitrosomonas eutropha C91 4271931 YP_746472.1 CDS Neut_0222 NC_008344.1 229410 229730 D KEGG: neu:NE0052 hypothetical protein; hypothetical protein 229410..229730 Nitrosomonas eutropha C91 4271932 YP_746473.1 CDS Neut_0223 NC_008344.1 229758 231185 D KEGG: neu:NE0053 D-Ala-D-Ala carboxypeptidase 3 (S13) family; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13, D-Ala-D-Ala carboxypeptidase C; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 229758..231185 Nitrosomonas eutropha C91 4271933 YP_746474.1 CDS Neut_0225 NC_008344.1 238746 239753 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: neu:NE2277 NAD dependent epimerase/dehydratase family; NAD-dependent epimerase/dehydratase 238746..239753 Nitrosomonas eutropha C91 4272288 YP_746475.1 CDS Neut_0226 NC_008344.1 239762 241036 D PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: neu:NE2276 UDP-glucose/GDP-mannose dehydrogenase family; UDP-glucose/GDP-mannose dehydrogenase 239762..241036 Nitrosomonas eutropha C91 4272289 YP_746476.1 CDS Neut_0227 NC_008344.1 241043 241939 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: neu:NE2464 integral membrane protein, DUF6; hypothetical protein complement(241043..241939) Nitrosomonas eutropha C91 4272290 YP_746477.1 CDS Neut_0228 NC_008344.1 242034 243239 D catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate; succinyldiaminopimelate transaminase 242034..243239 Nitrosomonas eutropha C91 4272291 YP_746478.1 CDS dapD NC_008344.1 243267 244088 D catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 243267..244088 Nitrosomonas eutropha C91 4272292 YP_746479.1 CDS Neut_0230 NC_008344.1 244277 244648 D KEGG: neu:NE2461 hypothetical protein; hypothetical protein 244277..244648 Nitrosomonas eutropha C91 4272293 YP_746480.1 CDS Neut_0231 NC_008344.1 244735 245082 D KEGG: neu:NE2461 hypothetical protein; hypothetical protein 244735..245082 Nitrosomonas eutropha C91 4272247 YP_746481.1 CDS Neut_0232 NC_008344.1 245269 246258 D TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; Helix-turn-helix, type 11 domain protein; KEGG: neu:NE2460 birA_ligase: biotin--acetyl-CoA-carboxylase ligase; biotin--acetyl-CoA-carboxylase ligase 245269..246258 Nitrosomonas eutropha C91 4272248 YP_746482.1 CDS Neut_0233 NC_008344.1 246286 247059 D type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 246286..247059 Nitrosomonas eutropha C91 4272249 YP_746483.1 CDS engB NC_008344.1 247078 247749 D binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 247078..247749 Nitrosomonas eutropha C91 4272250 YP_746484.1 CDS Neut_0235 NC_008344.1 247893 248900 D catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 247893..248900 Nitrosomonas eutropha C91 4272251 YP_746485.1 CDS Neut_0236 NC_008344.1 249019 249816 R ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate ABC transporter ATP-binding protein complement(249019..249816) Nitrosomonas eutropha C91 4272252 YP_746486.1 CDS Neut_0237 NC_008344.1 249826 250752 R TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: neu:NE1000 phosphate permease component of ATP-dependent phosphate uptake system; phosphate ABC transporter permease complement(249826..250752) Nitrosomonas eutropha C91 4272253 YP_746487.1 CDS Neut_0238 NC_008344.1 250831 251766 R TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: neu:NE0999 phosphate transport system permease protein; phosphate ABC transporter permease complement(250831..251766) Nitrosomonas eutropha C91 4272254 YP_746488.1 CDS Neut_0239 NC_008344.1 251997 252248 D KEGG: neu:NE0998 hypothetical protein; hypothetical protein 251997..252248 Nitrosomonas eutropha C91 4272255 YP_746489.1 CDS Neut_0240 NC_008344.1 252381 253529 R GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ complement(252381..253529) Nitrosomonas eutropha C91 4272256 YP_746490.1 CDS Neut_0241 NC_008344.1 253599 254837 R PFAM: cell division protein FtsA; KEGG: neu:NE0996 cell division protein FtsA; cell division protein FtsA complement(253599..254837) Nitrosomonas eutropha C91 4272257 YP_746491.1 CDS Neut_0242 NC_008344.1 254899 255627 R PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein, FtsQ-type; KEGG: neu:NE0995 putative cell division transmembrane protein; polypeptide-transport-associated domain-containing protein complement(254899..255627) Nitrosomonas eutropha C91 4272258 YP_746492.1 CDS ddl NC_008344.1 255683 256603 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase complement(255683..256603) Nitrosomonas eutropha C91 4272259 YP_746493.1 CDS murB NC_008344.1 256600 257598 R catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase complement(256600..257598) Nitrosomonas eutropha C91 4272260 YP_746494.1 CDS murC NC_008344.1 257608 259029 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(257608..259029) Nitrosomonas eutropha C91 4272261 YP_746495.1 CDS murG NC_008344.1 259026 260138 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase complement(259026..260138) Nitrosomonas eutropha C91 4272262 YP_746496.1 CDS Neut_0247 NC_008344.1 260161 261321 R TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: neu:NE0990 cell cycle proteins; cell division protein FtsW complement(260161..261321) Nitrosomonas eutropha C91 4272263 YP_746497.1 CDS murD NC_008344.1 261326 262738 R UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase complement(261326..262738) Nitrosomonas eutropha C91 4272264 YP_746498.1 CDS mraY NC_008344.1 262735 263820 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(262735..263820) Nitrosomonas eutropha C91 4271988 YP_746499.1 CDS Neut_0250 NC_008344.1 263892 265265 R TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: neu:NE0987 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase complement(263892..265265) Nitrosomonas eutropha C91 4271989 YP_746500.1 CDS murE NC_008344.1 265262 266824 R involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase complement(265262..266824) Nitrosomonas eutropha C91 4271990 YP_746501.1 CDS Neut_0252 NC_008344.1 266821 268560 R PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: neu:NE0985 penicillin binding protein transpeptidase domain; peptidoglycan glycosyltransferase complement(266821..268560) Nitrosomonas eutropha C91 4271991 YP_746502.1 CDS Neut_0253 NC_008344.1 268557 268844 R PFAM: cell division protein FtsL; KEGG: neu:NE0984 putative cell division ftsL transmembrane protein; cell division protein FtsL complement(268557..268844) Nitrosomonas eutropha C91 4271992 YP_746503.1 CDS mraW NC_008344.1 268841 269794 R TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: neu:NE0983 methyltransferase family; S-adenosyl-methyltransferase MraW complement(268841..269794) Nitrosomonas eutropha C91 4271993 YP_746504.1 CDS Neut_0255 NC_008344.1 269810 270256 R MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ complement(269810..270256) Nitrosomonas eutropha C91 4271994 YP_746505.1 CDS Neut_0256 NC_008344.1 270518 270922 R KEGG: eba:p1B280 transposase; hypothetical protein complement(270518..270922) Nitrosomonas eutropha C91 4271995 YP_746506.1 CDS Neut_0257 NC_008344.1 271100 271369 D PFAM: Modulator of Rho-dependent transcription termination; KEGG: neu:NE0186 hypothetical protein; transcriptional antiterminator Rof 271100..271369 Nitrosomonas eutropha C91 4271996 YP_746507.1 CDS Neut_0258 NC_008344.1 271510 272301 R PFAM: glycosyl transferase, family 2; KEGG: neu:NE0185 glycosyl transferase, family 2; glycosyl transferase complement(271510..272301) Nitrosomonas eutropha C91 4271997 YP_746508.1 CDS Neut_0259 NC_008344.1 272424 272873 D PFAM: NUDIX hydrolase; KEGG: neu:NE0184 NUDIX hydrolase; NUDIX hydrolase 272424..272873 Nitrosomonas eutropha C91 4271998 YP_746509.1 CDS Neut_0260 NC_008344.1 273152 273763 D KEGG: neu:NE0183 possible (U92432) ORF4 [Nitrosospira sp. NpAV]; hypothetical protein 273152..273763 Nitrosomonas eutropha C91 4271999 YP_746510.1 CDS Neut_0261 NC_008344.1 273918 274400 D TIGRFAM: YbhB and YbcL; PFAM: PEBP family protein; KEGG: neu:NE0182 hypothetical protein; YbhB and YbcL 273918..274400 Nitrosomonas eutropha C91 4272000 YP_746511.1 CDS Neut_0262 NC_008344.1 274490 275014 D catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 274490..275014 Nitrosomonas eutropha C91 4272001 YP_746512.1 CDS Neut_0263 NC_008344.1 275209 276522 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 275209..276522 Nitrosomonas eutropha C91 4272002 YP_746513.1 CDS Neut_0264 NC_008344.1 276569 277255 D KEGG: neu:NE0179 hypothetical protein; hypothetical protein 276569..277255 Nitrosomonas eutropha C91 4272003 YP_746514.1 CDS Neut_0265 NC_008344.1 277300 278010 R KEGG: neu:NE0178 phosphoglycerate mutase family; TIGRFAM: phosphoglycerate mutase 1 family; PFAM: Phosphoglycerate mutase; phosphoglycerate mutase complement(277300..278010) Nitrosomonas eutropha C91 4272004 YP_746515.1 CDS Neut_0266 NC_008344.1 278060 279127 R PFAM: fatty acid desaturase; KEGG: neu:NE0177 fatty acid desaturase, type 2; fatty acid desaturase complement(278060..279127) Nitrosomonas eutropha C91 4272109 YP_746516.1 CDS Neut_0267 NC_008344.1 279149 279592 R KEGG: neu:NE0176 hypothetical protein; hypothetical protein complement(279149..279592) Nitrosomonas eutropha C91 4272110 YP_746517.1 CDS Neut_0268 NC_008344.1 279608 280414 R PFAM: Nucleotidyl transferase; KEGG: neu:NE0175 ADP-glucose pyrophosphorylase; nucleotidyl transferase complement(279608..280414) Nitrosomonas eutropha C91 4272111 YP_746518.1 CDS Neut_0269 NC_008344.1 280458 281618 R PFAM: aminotransferase, class V; KEGG: neu:NE0174 aminotransferase class-V; class V aminotransferase complement(280458..281618) Nitrosomonas eutropha C91 4272112 YP_746519.1 CDS Neut_0270 NC_008344.1 282222 282602 D KEGG: neu:NE0199 ATP synthase protein I; ATP synthase protein I 282222..282602 Nitrosomonas eutropha C91 4272113 YP_746520.1 CDS Neut_0271 NC_008344.1 282634 283443 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 282634..283443 Nitrosomonas eutropha C91 4272114 YP_746521.1 CDS Neut_0272 NC_008344.1 283487 283759 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 283487..283759 Nitrosomonas eutropha C91 4272115 YP_746522.1 CDS Neut_0273 NC_008344.1 283799 284272 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 283799..284272 Nitrosomonas eutropha C91 4272116 YP_746523.1 CDS Neut_0274 NC_008344.1 284273 284809 D TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+-transporting two-sector ATPase, delta (OSCP) subunit; KEGG: neu:NE0203 ATP synthase, delta (OSCP) subunit; ATP synthase F1 subunit delta 284273..284809 Nitrosomonas eutropha C91 4272117 YP_746524.1 CDS Neut_0275 NC_008344.1 284822 286363 D produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 284822..286363 Nitrosomonas eutropha C91 4272118 YP_746525.1 CDS Neut_0276 NC_008344.1 286367 287251 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 286367..287251 Nitrosomonas eutropha C91 4272119 YP_746526.1 CDS Neut_0277 NC_008344.1 287282 288664 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 287282..288664 Nitrosomonas eutropha C91 4272120 YP_746527.1 CDS atpC NC_008344.1 288690 289112 D part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 288690..289112 Nitrosomonas eutropha C91 4272121 YP_746528.1 CDS Neut_0279 NC_008344.1 289359 290735 D TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; KEGG: neu:NE0208 glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase; UDP-N-acetylglucosamine pyrophosphorylase 289359..290735 Nitrosomonas eutropha C91 4272122 YP_746529.1 CDS Neut_0280 NC_008344.1 290775 292622 D TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase, class-II; sugar isomerase (SIS); KEGG: neu:NE0209 glutamine amidotransferase class-II:SIS domain; glucosamine--fructose-6-phosphate aminotransferase 290775..292622 Nitrosomonas eutropha C91 4272123 YP_746530.1 CDS Neut_0281 NC_008344.1 292765 293490 D PFAM: protein of unknown function DUF28; KEGG: neu:NE0210 hypothetical protein; hypothetical protein 292765..293490 Nitrosomonas eutropha C91 4272124 YP_746531.1 CDS ruvC NC_008344.1 293493 294029 D endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; holliday junction resolvase 293493..294029 Nitrosomonas eutropha C91 4272125 YP_746532.1 CDS ruvA NC_008344.1 294026 294610 D plays an essential role in ATP-dependent branch migration of the Holliday junction; holliday junction DNA helicase RuvA 294026..294610 Nitrosomonas eutropha C91 4272126 YP_746533.1 CDS ruvB NC_008344.1 294629 295669 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 294629..295669 Nitrosomonas eutropha C91 4272057 YP_746534.1 CDS Neut_0285 NC_008344.1 295730 296143 D TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: neu:NE0214 4-hydroxybenzoyl-CoA thioesterase family active site; 4-hydroxybenzoyl-CoA thioesterase 295730..296143 Nitrosomonas eutropha C91 4272058 YP_746535.1 CDS Neut_0286 NC_008344.1 296136 296840 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: neu:NE0215 MotA/TolQ/ExbB proton channel family; MotA/TolQ/ExbB proton channel 296136..296840 Nitrosomonas eutropha C91 4272059 YP_746536.1 CDS Neut_0287 NC_008344.1 296837 297253 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: neu:NE0216 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 296837..297253 Nitrosomonas eutropha C91 4272060 YP_746537.1 CDS Neut_0288 NC_008344.1 297274 298170 D KEGG: neu:NE0217 proline-rich region; hypothetical protein 297274..298170 Nitrosomonas eutropha C91 4272061 YP_746538.1 CDS tolB NC_008344.1 298209 299480 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 298209..299480 Nitrosomonas eutropha C91 4272062 YP_746539.1 CDS Neut_0290 NC_008344.1 299543 300064 D PFAM: OmpA/MotB domain protein; KEGG: neu:NE0219 bacterial outer membrane protein; ompA/MotB domain-containing protein 299543..300064 Nitrosomonas eutropha C91 4272063 YP_746540.1 CDS Neut_0291 NC_008344.1 300064 300885 D PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: neu:NE0220 TPR repeat; hypothetical protein 300064..300885 Nitrosomonas eutropha C91 4272064 YP_746541.1 CDS Neut_0292 NC_008344.1 300987 301622 D PFAM: Radical SAM domain protein; KEGG: neu:NE0221 radical activating enzyme; radical SAM domain-containing protein 300987..301622 Nitrosomonas eutropha C91 4272065 YP_746542.1 CDS Neut_0293 NC_008344.1 301644 302324 D TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: neu:NE0222 ExsB protein; exsB protein 301644..302324 Nitrosomonas eutropha C91 4272066 YP_746543.1 CDS Neut_0294 NC_008344.1 302325 302678 R PFAM: dihydroneopterin aldolase; KEGG: neu:NE0223 dihydroneopterin aldolase; dihydroneopterin aldolase complement(302325..302678) Nitrosomonas eutropha C91 4272067 YP_746544.1 CDS Neut_0295 NC_008344.1 302764 303366 D PFAM: protein of unknown function DUF205; KEGG: neu:NE0224 DUF205; hypothetical protein 302764..303366 Nitrosomonas eutropha C91 4272068 YP_746545.1 CDS Neut_0296 NC_008344.1 303384 304400 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease complement(303384..304400) Nitrosomonas eutropha C91 4272069 YP_746546.1 CDS rpsU NC_008344.1 304677 304889 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 304677..304889 Nitrosomonas eutropha C91 4272070 YP_746547.1 CDS Neut_0298 NC_008344.1 304921 305370 D PFAM: GatB/Yqey domain protein; KEGG: neu:NE0227 DUF186; GatB/Yqey domain-containing protein 304921..305370 Nitrosomonas eutropha C91 4272071 YP_746548.1 CDS Neut_0299 NC_008344.1 305465 307258 D KEGG: neu:NE0228 CHC2 zinc finger; TIGRFAM: DNA primase; PFAM: zinc finger, CHC2-family protein; TOPRIM domain protein; DNA primase DnaG, DnaB-binding; DNA primase catalytic core, N-terminal domain; SMART: Toprim sub domain protein; DNA primase 305465..307258 Nitrosomonas eutropha C91 4272072 YP_746549.1 CDS Neut_0300 NC_008344.1 307440 309689 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 307440..309689 Nitrosomonas eutropha C91 4272073 YP_746550.1 CDS Neut_0301 NC_008344.1 309869 310015 R KEGG: xft:PD1196 phage-related integrase; phage-related integrase complement(309869..310015) Nitrosomonas eutropha C91 4273377 YP_746551.1 CDS Neut_0302 NC_008344.1 310522 310725 D PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: neu:NE1312 cold-shock DNA-binding domain; cold-shock DNA-binding domain-containing protein 310522..310725 Nitrosomonas eutropha C91 4273378 YP_746552.1 CDS Neut_0303 NC_008344.1 311300 312127 R PFAM: Integrase, catalytic region; KEGG: lpf:lpl1576 hypothetical protein; integrase catalytic subunit complement(311300..312127) Nitrosomonas eutropha C91 4273379 YP_746553.1 CDS Neut_0304 NC_008344.1 312175 312471 R PFAM: transposase IS3/IS911 family protein; KEGG: lpf:lpl1584 hypothetical protein; transposase IS3/IS911 family protein complement(312175..312471) Nitrosomonas eutropha C91 4273380 YP_746554.1 CDS Neut_0305 NC_008344.1 312940 313575 R PFAM: cytochrome c, class I; KEGG: neu:NE0273 cytochrome c, class IC:cytochrome c, class I; cytochrome c, class I complement(312940..313575) Nitrosomonas eutropha C91 4273381 YP_746555.1 CDS Neut_0306 NC_008344.1 313688 314290 D KEGG: neu:NE0274 hypothetical protein; hypothetical protein 313688..314290 Nitrosomonas eutropha C91 4273382 YP_746556.1 CDS Neut_0307 NC_008344.1 314398 315210 D catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 314398..315210 Nitrosomonas eutropha C91 4273383 YP_746557.1 CDS rph NC_008344.1 315270 315998 D RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 315270..315998 Nitrosomonas eutropha C91 4273384 YP_746558.1 CDS Neut_0309 NC_008344.1 316017 316631 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase 316017..316631 Nitrosomonas eutropha C91 4273385 YP_746559.1 CDS Neut_0310 NC_008344.1 316666 317901 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 316666..317901 Nitrosomonas eutropha C91 4273386 YP_746560.1 CDS Neut_0311 NC_008344.1 317933 319732 D TIGRFAM: Twin-arginine translocation pathway signal; copper-resistance protein, CopA family; PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: neu:NE0279 multicopper oxidase type 1; copper-resistance protein, CopA family protein 317933..319732 Nitrosomonas eutropha C91 4273387 YP_746561.1 CDS Neut_0312 NC_008344.1 319729 320544 D PFAM: copper resistance B precursor; KEGG: neu:NE0280 possible copper resistance protein B precursor; copper resistance B 319729..320544 Nitrosomonas eutropha C91 4273388 YP_746562.1 CDS Neut_0313 NC_008344.1 320585 321172 R KEGG: neu:NE0281 hypothetical protein; hypothetical protein complement(320585..321172) Nitrosomonas eutropha C91 4273389 YP_746563.1 CDS Neut_0314 NC_008344.1 321264 321581 D KEGG: sao:SAOUHSC_00778 hypothetical protein; hypothetical protein 321264..321581 Nitrosomonas eutropha C91 4273390 YP_746564.1 CDS Neut_0315 NC_008344.1 321686 323599 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: neu:NE0477 ATPase components of ABC transporters with duplicated ATPase domains; ABC transporter-like protein complement(321686..323599) Nitrosomonas eutropha C91 4273391 YP_746565.1 CDS Neut_0318 NC_008344.1 324955 326661 D PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: noc:Noc_2952 sodium/hydrogen exchanger, TrkA-N; sodium/hydrogen exchanger 324955..326661 Nitrosomonas eutropha C91 4273823 YP_746566.1 CDS Neut_0320 NC_008344.1 327243 328298 D PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: hch:HCH_02988 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benz oquinol methylase; methyltransferase type 11 327243..328298 Nitrosomonas eutropha C91 4273825 YP_746567.1 CDS Neut_0321 NC_008344.1 328366 328638 D KEGG: noc:Noc_0582 phosphate transport system permease protein 2; hypothetical protein 328366..328638 Nitrosomonas eutropha C91 4273826 YP_746568.1 CDS trmB NC_008344.1 328816 329490 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(328816..329490) Nitrosomonas eutropha C91 4273827 YP_746569.1 CDS thiG NC_008344.1 329523 330329 R functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase complement(329523..330329) Nitrosomonas eutropha C91 4273828 YP_746570.1 CDS Neut_0324 NC_008344.1 330389 330589 R TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: neu:NE0285 DUF170; thiamine biosynthesis protein ThiS complement(330389..330589) Nitrosomonas eutropha C91 4273829 YP_746571.1 CDS Neut_0325 NC_008344.1 330816 331403 D PFAM: protein of unknown function DUF785; KEGG: neu:NE0295 hypothetical protein; hypothetical protein 330816..331403 Nitrosomonas eutropha C91 4273831 YP_746572.1 CDS Neut_0326 NC_008344.1 331400 332932 D KEGG: neu:NE0296 hypothetical protein; hypothetical protein 331400..332932 Nitrosomonas eutropha C91 4273832 YP_746573.1 CDS Neut_0327 NC_008344.1 332982 333887 D TIGRFAM: alpha-L-glutamate ligase-like protein; KEGG: neu:NE0297 hypothetical protein; alpha-L-glutamate ligase-like protein 332982..333887 Nitrosomonas eutropha C91 4273833 YP_746574.1 CDS cls NC_008344.1 334084 335562 R catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase complement(334084..335562) Nitrosomonas eutropha C91 4273834 YP_746575.1 CDS Neut_0329 NC_008344.1 336224 336763 R PFAM: AmiS/UreI transporter; KEGG: bbr:BB1404 putative transporter protein; AmiS/UreI transporter complement(336224..336763) Nitrosomonas eutropha C91 4273835 YP_746576.1 CDS Neut_0331 NC_008344.1 338000 339160 D KEGG: noc:Noc_1786 hypothetical protein; hypothetical protein 338000..339160 Nitrosomonas eutropha C91 4273837 YP_746577.1 CDS Neut_0332 NC_008344.1 339381 339710 R KEGG: rme:Rmet_4152 integrase, catalytic region; integrase catalytic subunit complement(339381..339710) Nitrosomonas eutropha C91 4273838 YP_746578.1 CDS Neut_0333 NC_008344.1 339806 340813 R KEGG: oih:OB2438 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I complement(339806..340813) Nitrosomonas eutropha C91 4271952 YP_746579.1 CDS flgA NC_008344.1 341001 341696 R required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA complement(341001..341696) Nitrosomonas eutropha C91 4271953 YP_746580.1 CDS Neut_0335 NC_008344.1 341923 342333 D TIGRFAM: flagellar basal-body rod protein FlgB; KEGG: neu:NE0302 flagella basal body rod protein; flagellar basal-body rod protein FlgB 341923..342333 Nitrosomonas eutropha C91 4271954 YP_746581.1 CDS Neut_0336 NC_008344.1 342339 342743 D TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: neu:NE0303 flagella basal body rod protein; flagellar basal-body rod protein FlgC 342339..342743 Nitrosomonas eutropha C91 4271955 YP_746582.1 CDS flgD NC_008344.1 342756 343427 D acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein 342756..343427 Nitrosomonas eutropha C91 4271956 YP_746583.1 CDS flgE NC_008344.1 343443 344702 D the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 343443..344702 Nitrosomonas eutropha C91 4271957 YP_746584.1 CDS flgF NC_008344.1 344743 345486 D FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF 344743..345486 Nitrosomonas eutropha C91 4271958 YP_746585.1 CDS flgG NC_008344.1 345525 346307 D makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 345525..346307 Nitrosomonas eutropha C91 4271959 YP_746586.2 CDS flgH NC_008344.1 346494 347234 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar basal body L-ring protein 346494..347234 Nitrosomonas eutropha C91 4271960 YP_746587.1 CDS flgI NC_008344.1 347256 348383 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 347256..348383 Nitrosomonas eutropha C91 4271961 YP_746588.1 CDS Neut_0343 NC_008344.1 348397 349404 D KEGG: neu:NE0310 mannosyl-glycoprotein endo-beta-N-acetylglucosamidases; TIGRFAM: flagellar rod assembly protein/muramidase FlgJ; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2; flagellar rod assembly protein/muramidase FlgJ 348397..349404 Nitrosomonas eutropha C91 4271962 YP_746589.1 CDS Neut_0344 NC_008344.1 349663 351066 D TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: neu:NE0311 flagella basal body rod protein; flagellar hook-associated protein FlgK 349663..351066 Nitrosomonas eutropha C91 4271963 YP_746590.1 CDS flgL NC_008344.1 351095 351994 D with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; in Vibrio parahaemolyticus the protein in this cluster is associated with the lateral flagella; flagellar hook-associated protein FlgL 351095..351994 Nitrosomonas eutropha C91 4271964 YP_746591.1 CDS Neut_0346 NC_008344.1 352071 352616 D KEGG: neu:NE0313 hypothetical protein; hypothetical protein 352071..352616 Nitrosomonas eutropha C91 4271965 YP_746592.1 CDS Neut_0347 NC_008344.1 352606 353736 R PFAM: protein of unknown function DUF89; KEGG: neu:NE0316 hypothetical protein; hypothetical protein complement(352606..353736) Nitrosomonas eutropha C91 4271966 YP_746593.1 CDS Neut_0348 NC_008344.1 353893 354366 D KEGG: neu:NE0319 hypothetical protein; hypothetical protein 353893..354366 Nitrosomonas eutropha C91 4271967 YP_746594.1 CDS Neut_0349 NC_008344.1 354356 354919 D PFAM: GCN5-related N-acetyltransferase; KEGG: neu:NE0320 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 354356..354919 Nitrosomonas eutropha C91 4271968 YP_746595.1 CDS Neut_0350 NC_008344.1 354995 355267 D PFAM: Fe(II) trafficking protein YggX; KEGG: neu:NE0322 hypothetical protein; hypothetical protein 354995..355267 Nitrosomonas eutropha C91 4271969 YP_746596.1 CDS Neut_0351 NC_008344.1 355318 357444 D catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 355318..357444 Nitrosomonas eutropha C91 4273904 YP_746597.1 CDS Neut_0352 NC_008344.1 357465 359192 R PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: aba:Acid345_0223 sulphate transporter; sulfate transporter complement(357465..359192) Nitrosomonas eutropha C91 4273905 YP_746598.1 CDS Neut_0353 NC_008344.1 359189 359539 R PFAM: regulatory protein, ArsR; KEGG: bcz:pE33L466_0439 transcriptional regulator; arsR family transcriptional regulator complement(359189..359539) Nitrosomonas eutropha C91 4273906 YP_746599.1 CDS Neut_0354 NC_008344.1 359904 360041 R KEGG: sil:SPO2407 ISSpo6, transposase orfB; hypothetical protein complement(359904..360041) Nitrosomonas eutropha C91 4273907 YP_746600.1 CDS Neut_0355 NC_008344.1 360168 360560 R KEGG: ret:RHE_PB00143 probable insertion sequence transposase protein; insertion sequence transposase protein complement(360168..360560) Nitrosomonas eutropha C91 4273908 YP_746601.1 CDS Neut_0356 NC_008344.1 361015 362010 D PFAM: membrane-bound metal-dependent hydrolase; KEGG: noc:Noc_0104 membrane-bound metal-dependent hydrolase; membrane-bound metal-dependent hydrolase 361015..362010 Nitrosomonas eutropha C91 4273909 YP_746602.1 CDS Neut_0357 NC_008344.1 362559 363806 D PFAM: transposase, mutator type; KEGG: eba:p2A367 transposase; transposase, mutator type 362559..363806 Nitrosomonas eutropha C91 4273910 YP_746603.1 CDS Neut_0358 NC_008344.1 363872 364168 D PFAM: transposase IS3/IS911 family protein; KEGG: lpf:lpl1584 hypothetical protein; transposase IS3/IS911 family protein 363872..364168 Nitrosomonas eutropha C91 4273911 YP_746604.1 CDS Neut_0359 NC_008344.1 364165 364350 D KEGG: lpf:lpl1576 hypothetical protein; hypothetical protein 364165..364350 Nitrosomonas eutropha C91 4273912 YP_746605.1 CDS Neut_0360 NC_008344.1 364369 364665 D PFAM: transposase IS3/IS911 family protein; KEGG: lpf:lpl1584 hypothetical protein; transposase IS3/IS911 family protein 364369..364665 Nitrosomonas eutropha C91 4273913 YP_746606.1 CDS Neut_0361 NC_008344.1 364924 365541 D PFAM: Integrase, catalytic region; KEGG: lpf:lpl1576 hypothetical protein; integrase catalytic subunit 364924..365541 Nitrosomonas eutropha C91 4273914 YP_746607.1 CDS Neut_0362 NC_008344.1 365613 365849 D KEGG: atc:AGR_C_1609 hypothetical protein; hypothetical protein 365613..365849 Nitrosomonas eutropha C91 4273915 YP_746608.1 CDS Neut_0363 NC_008344.1 366607 366816 R KEGG: nme:NMB1539 IS1106 transposase; hypothetical protein complement(366607..366816) Nitrosomonas eutropha C91 4273916 YP_746609.1 CDS Neut_0364 NC_008344.1 366806 367060 R hypothetical protein complement(366806..367060) Nitrosomonas eutropha C91 4273917 YP_746610.1 CDS Neut_0365 NC_008344.1 367984 369246 D KEGG: tcx:Tcr_0370 hypothetical protein; hypothetical protein 367984..369246 Nitrosomonas eutropha C91 4273918 YP_746611.1 CDS Neut_0366 NC_008344.1 369344 369841 D hypothetical protein 369344..369841 Nitrosomonas eutropha C91 4273919 YP_746612.1 CDS Neut_0367 NC_008344.1 369843 370373 D hypothetical protein 369843..370373 Nitrosomonas eutropha C91 4273920 YP_746613.1 CDS Neut_0368 NC_008344.1 370453 371175 D hypothetical protein 370453..371175 Nitrosomonas eutropha C91 4273479 YP_746614.1 CDS Neut_0369 NC_008344.1 371338 371622 D KEGG: msu:MS1907 hypothetical protein; hypothetical protein 371338..371622 Nitrosomonas eutropha C91 4273480 YP_746615.1 CDS Neut_0370 NC_008344.1 371710 372627 D KEGG: dar:Daro_2333 hypothetical protein; hypothetical protein 371710..372627 Nitrosomonas eutropha C91 4273481 YP_746616.1 CDS Neut_0371 NC_008344.1 372776 373120 D PFAM: protein of unknown function DUF1232; KEGG: son:SO0318 hypothetical protein; hypothetical protein 372776..373120 Nitrosomonas eutropha C91 4273482 YP_746617.1 CDS Neut_0372 NC_008344.1 373515 374612 R PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: neu:NE2126 glycolate oxidase, (S)-2-hydroxy-acid oxidase, peroxisomal; FMN-dependent alpha-hydroxy acid dehydrogenase complement(373515..374612) Nitrosomonas eutropha C91 4273483 YP_746618.1 CDS Neut_0373 NC_008344.1 374722 375405 R PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: neu:NE2125 putative hydroxylase; hydroxylase complement(374722..375405) Nitrosomonas eutropha C91 4273484 YP_746619.1 CDS Neut_0374 NC_008344.1 375433 377643 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: neu:NE2124 TonB-dependent receptor protein; TonB-dependent siderophore receptor complement(375433..377643) Nitrosomonas eutropha C91 4273485 YP_746620.1 CDS Neut_0376 NC_008344.1 378022 378492 D PFAM: transposase, IS4 family protein; KEGG: eba:p2A101 putative transposase, fragment; transposase, IS4 family protein 378022..378492 Nitrosomonas eutropha C91 4273487 YP_746621.1 CDS Neut_0377 NC_008344.1 379277 380335 D KEGG: mfa:Mfla_1552 protein of unknown function DUF81; hypothetical protein 379277..380335 Nitrosomonas eutropha C91 4273488 YP_746622.1 CDS Neut_0379 NC_008344.1 380776 381474 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: neu:NE1983 hypothetical protein; Sel1 domain-containing protein complement(380776..381474) Nitrosomonas eutropha C91 4273490 YP_746623.1 CDS Neut_0380 NC_008344.1 381580 382704 R dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein complement(381580..382704) Nitrosomonas eutropha C91 4273491 YP_746624.1 CDS aroB NC_008344.1 382697 383806 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase complement(382697..383806) Nitrosomonas eutropha C91 4273492 YP_746625.1 CDS aroK NC_008344.1 383855 384502 R catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase complement(383855..384502) Nitrosomonas eutropha C91 4273493 YP_746626.1 CDS Neut_0383 NC_008344.1 384576 385937 R PFAM: peptidase U32; KEGG: neu:NE1979 peptidase family U32; peptidase U32 complement(384576..385937) Nitrosomonas eutropha C91 4273494 YP_746627.1 CDS Neut_0384 NC_008344.1 386028 389528 D KEGG: neu:NE1978 DNA polymerase III (alpha chain) protein; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: phosphoesterase PHP domain protein; DNA polymerase III subunit alpha 386028..389528 Nitrosomonas eutropha C91 4273495 YP_746628.1 CDS Neut_0385 NC_008344.1 389542 389733 R KEGG: neu:NE1977 putative transmembrane protein; transmembrane protein complement(389542..389733) Nitrosomonas eutropha C91 4273496 YP_746629.1 CDS miaA NC_008344.1 389884 390837 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 389884..390837 Nitrosomonas eutropha C91 4273446 YP_746630.1 CDS Neut_0387 NC_008344.1 391370 392635 R PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; KEGG: neu:NE1975 nitrogen assimilation regulatory protein; Fis family two component sigma-54-specific transcriptional regulator complement(391370..392635) Nitrosomonas eutropha C91 4273449 YP_746631.1 CDS Neut_0388 NC_008344.1 392936 395110 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; KEGG: neu:NE1974 sensory transduction histidine kinase; periplasmic sensor signal transduction histidine kinase complement(392936..395110) Nitrosomonas eutropha C91 4273450 YP_746632.1 CDS Neut_0389 NC_008344.1 395120 395725 R KEGG: neu:NE1973 possible proline rich signal peptide protein; signal peptide protein complement(395120..395725) Nitrosomonas eutropha C91 4273451 YP_746633.1 CDS Neut_0390 NC_008344.1 395727 397007 R TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: neu:NE1972 rRNA methylase; sun protein complement(395727..397007) Nitrosomonas eutropha C91 4273452 YP_746634.1 CDS Neut_0391 NC_008344.1 397020 397970 R TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: neu:NE1971 formyl transferase N-terminus:methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase complement(397020..397970) Nitrosomonas eutropha C91 4273453 YP_746635.1 CDS def NC_008344.1 398033 398539 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(398033..398539) Nitrosomonas eutropha C91 4273454 YP_746636.1 CDS Neut_0393 NC_008344.1 398714 399742 D PFAM: Peptidoglycan-binding LysM; KEGG: neu:NE1969 LysM motif; peptidoglycan-binding LysM 398714..399742 Nitrosomonas eutropha C91 4273455 YP_746637.1 CDS Neut_0394 NC_008344.1 399841 400962 D TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: neu:NE1968 SMF family; DNA protecting protein DprA 399841..400962 Nitrosomonas eutropha C91 4273456 YP_746638.1 CDS Neut_0395 NC_008344.1 401044 401502 D PFAM: protein of unknown function DUF494; KEGG: neu:NE1967 Smg protein; hypothetical protein 401044..401502 Nitrosomonas eutropha C91 4273457 YP_746639.1 CDS Neut_0396 NC_008344.1 401630 404128 D decatenates replicating daughter chromosomes; DNA topoisomerase III 401630..404128 Nitrosomonas eutropha C91 4273458 YP_746640.1 CDS Neut_0397 NC_008344.1 404181 404432 R KEGG: neu:NE1965 hypothetical protein; hypothetical protein complement(404181..404432) Nitrosomonas eutropha C91 4273459 YP_746641.1 CDS Neut_0398 NC_008344.1 404784 406085 D catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 404784..406085 Nitrosomonas eutropha C91 4273460 YP_746642.1 CDS cmk NC_008344.1 406165 406839 D Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 406165..406839 Nitrosomonas eutropha C91 4273461 YP_746643.1 CDS rpsA NC_008344.1 406940 408652 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 406940..408652 Nitrosomonas eutropha C91 4273462 YP_746644.1 CDS Neut_0401 NC_008344.1 408662 408979 D TIGRFAM: integration host factor, beta subunit; PFAM: histone family protein DNA-binding protein; KEGG: neu:NE1961 bacterial histone-like DNA-binding protein; integration host factor subunit beta 408662..408979 Nitrosomonas eutropha C91 4273463 YP_746645.1 CDS Neut_0402 NC_008344.1 409502 410197 D type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 409502..410197 Nitrosomonas eutropha C91 4273464 YP_746646.1 CDS Neut_0403 NC_008344.1 410192 411232 R PFAM: Squalene/phytoene synthase; KEGG: neu:NE1958 squalene and phytoene synthase; squalene/phytoene synthase complement(410192..411232) Nitrosomonas eutropha C91 4273465 YP_746647.1 CDS Neut_0404 NC_008344.1 411254 412507 R TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: neu:NE1957 Orn/DAP/Arg decarboxylase family 2; diaminopimelate decarboxylase complement(411254..412507) Nitrosomonas eutropha C91 4273466 YP_746648.1 CDS Neut_0405 NC_008344.1 412652 413254 R KEGG: neu:NE1956 putative lipoprotein; lipoprotein complement(412652..413254) Nitrosomonas eutropha C91 4273467 YP_746649.1 CDS Neut_0406 NC_008344.1 413251 414156 R PFAM: Mammalian cell entry related domain protein; KEGG: neu:NE1955 mce related protein; hypothetical protein complement(413251..414156) Nitrosomonas eutropha C91 4273468 YP_746650.1 CDS Neut_0407 NC_008344.1 414182 415009 R PFAM: inositol monophosphatase; KEGG: neu:NE1954 inositol monophosphatase (extragenic suppressor protein); inositol-phosphate phosphatase complement(414182..415009) Nitrosomonas eutropha C91 4273469 YP_746651.1 CDS Neut_0408 NC_008344.1 415060 415806 D TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: neu:NE1953 rRNA_methyl_1: RNA methyltransferase, TrmHfamily, group 1; RNA methyltransferase 415060..415806 Nitrosomonas eutropha C91 4273470 YP_746652.1 CDS Neut_0409 NC_008344.1 415890 416504 R PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: neu:NE1952 putative glutathione S-transferase protein; glutathione S-transferase domain-containing protein complement(415890..416504) Nitrosomonas eutropha C91 4273471 YP_746653.1 CDS Neut_0410 NC_008344.1 416641 418017 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 416641..418017 Nitrosomonas eutropha C91 4273472 YP_746654.1 CDS Neut_0411 NC_008344.1 418155 418745 D with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 418155..418745 Nitrosomonas eutropha C91 4273473 YP_746655.1 CDS dnaK NC_008344.1 418809 420752 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 418809..420752 Nitrosomonas eutropha C91 4273474 YP_746656.1 CDS Neut_0413 NC_008344.1 420943 422052 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 420943..422052 Nitrosomonas eutropha C91 4273475 YP_746657.1 CDS Neut_0414 NC_008344.1 422150 425494 R PFAM: MscS Mechanosensitive ion channel; KEGG: neu:NE1947 hypothetical protein; mechanosensitive ion channel protein MscS complement(422150..425494) Nitrosomonas eutropha C91 4273476 YP_746658.1 CDS Neut_0415 NC_008344.1 425958 426524 R PFAM: regulatory protein, TetR; KEGG: neu:NE1946 bacterial regulatory proteins, TetR family; TetR family transcriptional regulator complement(425958..426524) Nitrosomonas eutropha C91 4273477 YP_746659.1 CDS Neut_0416 NC_008344.1 426582 427775 R PFAM: HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: neu:NE1945 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(426582..427775) Nitrosomonas eutropha C91 4273478 YP_746660.1 CDS Neut_0417 NC_008344.1 427837 428379 R PFAM: OsmC family protein; KEGG: neu:NE1944 hypothetical protein; OsmC family protein complement(427837..428379) Nitrosomonas eutropha C91 4273703 YP_746661.1 CDS pepN NC_008344.1 429125 431746 R TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: neu:NE0626 aminopeptidase N, APN (CD13); aminopeptidase N complement(429125..431746) Nitrosomonas eutropha C91 4273704 YP_746662.1 CDS Neut_0419 NC_008344.1 431819 433078 R KEGG: neu:NE1701 peptide methionine sulfoxide reductase; TIGRFAM: peptide methionine sulfoxide reductase; methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; Methionine sulfoxide reductase B; peptide methionine sulfoxide reductase complement(431819..433078) Nitrosomonas eutropha C91 4273705 YP_746663.1 CDS Neut_0420 NC_008344.1 433413 433955 D PFAM: response regulator receiver; KEGG: neu:NE1700 diguanylate cyclase/phosphodiesterase domain 2 (EAL); response regulator receiver protein 433413..433955 Nitrosomonas eutropha C91 4273706 YP_746664.1 CDS Neut_0422 NC_008344.1 435042 437417 D KEGG: neu:NE1700 diguanylate cyclase/phosphodiesterase domain 2 (EAL); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 435042..437417 Nitrosomonas eutropha C91 4273708 YP_746665.1 CDS Neut_0423 NC_008344.1 437500 438756 R KEGG: neu:NE1699 hypothetical protein; hypothetical protein complement(437500..438756) Nitrosomonas eutropha C91 4273709 YP_746666.1 CDS Neut_0424 NC_008344.1 439097 440371 D KEGG: neu:NE1697 Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase; O-acetylhomoserine/O-acetylserine sulfhydrylase 439097..440371 Nitrosomonas eutropha C91 4273710 YP_746667.1 CDS Neut_0425 NC_008344.1 440356 441606 R PFAM: NnrS family protein; KEGG: neu:NE1696 hypothetical protein; NnrS family protein complement(440356..441606) Nitrosomonas eutropha C91 4273711 YP_746668.1 CDS Neut_0426 NC_008344.1 441707 442633 R KEGG: neu:NE1695 bacterial transferase hexapeptide repeat; Serine O-acetyltransferase complement(441707..442633) Nitrosomonas eutropha C91 4273712 YP_746669.1 CDS Neut_0427 NC_008344.1 443032 444039 D KEGG: neu:NE1694 glucokinase; TIGRFAM: glucokinase; PFAM: Glucokinase; glucokinase 443032..444039 Nitrosomonas eutropha C91 4273713 YP_746670.1 CDS Neut_0428 NC_008344.1 444054 444701 D KEGG: neu:NE1693 putative transmembrane protein; transmembrane protein 444054..444701 Nitrosomonas eutropha C91 4273714 YP_746671.1 CDS Neut_0429 NC_008344.1 444742 445104 R PFAM: protein of unknown function DUF486; KEGG: neu:NE1692 hypothetical protein; hypothetical protein complement(444742..445104) Nitrosomonas eutropha C91 4273715 YP_746672.1 CDS Neut_0430 NC_008344.1 445124 445810 R TIGRFAM: 6-phosphogluconolactonase; KEGG: neu:NE1691 glucosamine/galactosamine-6-phosphate isomerase; 6-phosphogluconolactonase complement(445124..445810) Nitrosomonas eutropha C91 4273716 YP_746673.1 CDS Neut_0431 NC_008344.1 445792 446448 R PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: neu:NE1690 haloacid dehalogenase/epoxide hydrolase family; hydrolase complement(445792..446448) Nitrosomonas eutropha C91 4273717 YP_746674.1 CDS Neut_0432 NC_008344.1 446455 447387 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: neu:NE1689 possible epimerase; NAD-dependent epimerase/dehydratase complement(446455..447387) Nitrosomonas eutropha C91 4273718 YP_746675.1 CDS Neut_0433 NC_008344.1 447380 448315 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: neu:NE1688 D-isomer specific 2-hydroxyacid dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase complement(447380..448315) Nitrosomonas eutropha C91 4273719 YP_746676.1 CDS Neut_0434 NC_008344.1 448312 449073 R PFAM: HpcH/HpaI aldolase; KEGG: neu:NE1687 putative 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase protein; 2-dehydro-3-deoxyglucarate aldolase complement(448312..449073) Nitrosomonas eutropha C91 4271898 YP_746677.1 CDS Neut_0435 NC_008344.1 449085 449843 R CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase complement(449085..449843) Nitrosomonas eutropha C91 4271899 YP_746678.1 CDS Neut_0436 NC_008344.1 450146 451225 D PFAM: glycosyl transferase, family 2; KEGG: nmu:Nmul_A0432 glycosyl transferase, family 2; glycosyl transferase 450146..451225 Nitrosomonas eutropha C91 4271900 YP_746679.1 CDS Neut_0437 NC_008344.1 451348 452565 D PFAM: O-antigen polymerase; KEGG: neu:NE1682 possible transmembrane protein; O-antigen polymerase 451348..452565 Nitrosomonas eutropha C91 4271901 YP_746680.1 CDS Neut_0438 NC_008344.1 452565 453254 D PFAM: O-methyltransferase, family 3; KEGG: neu:NE1681 possible methyltransferase; O-methyltransferase family protein 452565..453254 Nitrosomonas eutropha C91 4271902 YP_746681.1 CDS Neut_0439 NC_008344.1 453307 453564 D KEGG: neu:NE1680 hypothetical protein; hypothetical protein 453307..453564 Nitrosomonas eutropha C91 4271903 YP_746682.1 CDS Neut_0440 NC_008344.1 453614 454138 D KEGG: neu:NE1679 hypothetical protein; hypothetical protein 453614..454138 Nitrosomonas eutropha C91 4271904 YP_746683.1 CDS Neut_0441 NC_008344.1 454146 454493 D PFAM: arsenate reductase and related; KEGG: neu:NE1678 putative arsenate reductase; arsenate reductase-like protein 454146..454493 Nitrosomonas eutropha C91 4271905 YP_746684.1 CDS rplS NC_008344.1 454551 454940 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(454551..454940) Nitrosomonas eutropha C91 4271906 YP_746685.1 CDS trmD NC_008344.1 454912 455757 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(454912..455757) Nitrosomonas eutropha C91 4271907 YP_746686.1 CDS rimM NC_008344.1 455765 456271 R Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM complement(455765..456271) Nitrosomonas eutropha C91 4271908 YP_746687.1 CDS rpsP NC_008344.1 456312 456569 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(456312..456569) Nitrosomonas eutropha C91 4271909 YP_746688.1 CDS Neut_0446 NC_008344.1 456800 458080 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: neu:NE1670 glycolate oxidase iron-sulfur subunit; hypothetical protein 456800..458080 Nitrosomonas eutropha C91 4271910 YP_746689.1 CDS Neut_0447 NC_008344.1 458134 458760 D KEGG: neu:NE1669 putative ubiquinone biosynthesis protein; ubiquinone biosynthesis protein 458134..458760 Nitrosomonas eutropha C91 4271911 YP_746690.1 CDS Neut_0448 NC_008344.1 458794 459354 D PFAM: protein of unknown function DUF179; KEGG: neu:NE1668 DUF179; hypothetical protein 458794..459354 Nitrosomonas eutropha C91 4271912 YP_746691.1 CDS Neut_0449 NC_008344.1 459347 459820 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; holliday junction resolvase-like protein 459347..459820 Nitrosomonas eutropha C91 4271913 YP_746692.1 CDS Neut_0450 NC_008344.1 459807 460310 D regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase 459807..460310 Nitrosomonas eutropha C91 4271914 YP_746693.1 CDS pyrB NC_008344.1 460498 461448 D catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 460498..461448 Nitrosomonas eutropha C91 4271915 YP_746694.1 CDS Neut_0452 NC_008344.1 461463 462734 D Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 461463..462734 Nitrosomonas eutropha C91 4273411 YP_746695.1 CDS Neut_0453 NC_008344.1 462858 464963 D PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: neu:NE1663 peptidase family M3; oligopeptidase A 462858..464963 Nitrosomonas eutropha C91 4273412 YP_746696.1 CDS Neut_0454 NC_008344.1 465199 466350 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 465199..466350 Nitrosomonas eutropha C91 4273413 YP_746697.1 CDS Neut_0455 NC_008344.1 466376 469573 D TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: protein of unknown function DUF201; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain, oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: neu:NE1661 carbamoyl-phosphate synthase:methylglyoxal synthase-like domain; carbamoyl-phosphate synthase large subunit 466376..469573 Nitrosomonas eutropha C91 4273414 YP_746698.1 CDS Neut_0456 NC_008344.1 469758 470234 D TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: neu:NE1660 prokaryotic transcription elongation factor GreA/GreB; transcription elongation factor GreA 469758..470234 Nitrosomonas eutropha C91 4273415 YP_746699.1 CDS Neut_0457 NC_008344.1 470249 471220 R PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: neu:NE1659 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein complement(470249..471220) Nitrosomonas eutropha C91 4273416 YP_746700.1 CDS Neut_0458 NC_008344.1 471867 473693 D activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 471867..473693 Nitrosomonas eutropha C91 4273417 YP_746701.1 CDS Neut_0459 NC_008344.1 473782 474705 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; KEGG: neu:NE1657 hypothetical protein; NAD-dependent epimerase/dehydratase 473782..474705 Nitrosomonas eutropha C91 4273418 YP_746702.1 CDS Neut_0460 NC_008344.1 474817 475071 D PFAM: phosphopantetheine-binding; KEGG: neu:NE1656 phosphopantetheine attachment site; phosphopantetheine-binding protein 474817..475071 Nitrosomonas eutropha C91 4273419 YP_746703.1 CDS Neut_0461 NC_008344.1 475071 476258 D PFAM: aminotransferase, class I and II; KEGG: neu:NE1655 aminotransferase class-I; 8-amino-7-oxononanoate synthase 475071..476258 Nitrosomonas eutropha C91 4273420 YP_746704.1 CDS Neut_0462 NC_008344.1 476310 477068 D PFAM: protein of unknown function DUF152; KEGG: neu:NE1654 DUF152; hypothetical protein 476310..477068 Nitrosomonas eutropha C91 4273421 YP_746705.1 CDS Neut_0463 NC_008344.1 477256 478068 D PFAM: zinc/iron permease; KEGG: neu:NE1653 ZIP zinc transporter; zinc/iron permease 477256..478068 Nitrosomonas eutropha C91 4273422 YP_746706.1 CDS Neut_0464 NC_008344.1 478075 480690 R PFAM: glycosyl transferase, family 2; glycosyl transferase, family 39; GtrA family protein; KEGG: neu:NE1652 possible dolichol monophosphate mannose synthase; dolichyl-phosphate beta-D-mannosyltransferase complement(478075..480690) Nitrosomonas eutropha C91 4273423 YP_746707.1 CDS Neut_0465 NC_008344.1 480799 481815 R PFAM: aminodeoxychorismate lyase; KEGG: neu:NE1651 DUF175; aminodeoxychorismate lyase complement(480799..481815) Nitrosomonas eutropha C91 4273424 YP_746708.1 CDS Neut_0466 NC_008344.1 481943 483184 R PFAM: beta-ketoacyl synthase; KEGG: neu:NE1650 beta-ketoacyl synthase; beta-ketoacyl synthase complement(481943..483184) Nitrosomonas eutropha C91 4273425 YP_746709.1 CDS acpP NC_008344.1 483219 483464 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(483219..483464) Nitrosomonas eutropha C91 4273426 YP_746710.1 CDS Neut_0468 NC_008344.1 483630 484373 R TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: neu:NE1648 short-chain dehydrogenase/reductase (SDR) superfamily; 3-oxoacyl-(acyl-carrier-protein) reductase complement(483630..484373) Nitrosomonas eutropha C91 4273427 YP_746711.1 CDS Neut_0469 NC_008344.1 484430 485368 R TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase domain protein; KEGG: neu:NE1647 malonyl CoA-acyl carrier protein transacylase; malonyl CoA-acyl carrier protein transacylase complement(484430..485368) Nitrosomonas eutropha C91 4272363 YP_746712.1 CDS Neut_0470 NC_008344.1 485372 486334 R FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase complement(485372..486334) Nitrosomonas eutropha C91 4272364 YP_746713.1 CDS Neut_0471 NC_008344.1 486345 487364 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX complement(486345..487364) Nitrosomonas eutropha C91 4272365 YP_746714.1 CDS rpmF NC_008344.1 487442 487624 R some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 complement(487442..487624) Nitrosomonas eutropha C91 4272366 YP_746715.1 CDS Neut_0473 NC_008344.1 487649 488152 R PFAM: protein of unknown function DUF177; KEGG: neu:NE1643 hypothetical protein; hypothetical protein complement(487649..488152) Nitrosomonas eutropha C91 4272367 YP_746716.1 CDS Neut_0474 NC_008344.1 488176 488817 D TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: neu:NE1642 Maf-like protein; maf protein 488176..488817 Nitrosomonas eutropha C91 4272368 YP_746717.1 CDS Neut_0475 NC_008344.1 488934 489326 D KEGG: neu:NE1641 hypothetical protein; hypothetical protein 488934..489326 Nitrosomonas eutropha C91 4272369 YP_746718.1 CDS Neut_0476 NC_008344.1 489435 490859 D PFAM: outer membrane efflux protein; KEGG: neu:NE1640 outer membrane efflux protein; outer membrane efflux protein 489435..490859 Nitrosomonas eutropha C91 4272370 YP_746719.1 CDS Neut_0477 NC_008344.1 490856 492352 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: neu:NE1639 HlyD family secretion protein; RND family efflux transporter MFP subunit 490856..492352 Nitrosomonas eutropha C91 4272371 YP_746720.1 CDS Neut_0478 NC_008344.1 492448 495657 D TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: neu:NE1638 acriflavin resistance protein:heavy metal efflux pump CzcA; CzcA family heavy metal efflux pump 492448..495657 Nitrosomonas eutropha C91 4272372 YP_746721.1 CDS Neut_0479 NC_008344.1 495931 496368 D KEGG: neu:NE1637 hypothetical protein; hypothetical protein 495931..496368 Nitrosomonas eutropha C91 4272373 YP_746722.1 CDS Neut_0480 NC_008344.1 496393 496680 D KEGG: neu:NE1636 hypothetical protein; hypothetical protein 496393..496680 Nitrosomonas eutropha C91 4272374 YP_746723.1 CDS Neut_0481 NC_008344.1 496677 497585 D KEGG: neu:NE1635 hypothetical protein; hypothetical protein 496677..497585 Nitrosomonas eutropha C91 4272375 YP_746724.1 CDS Neut_0482 NC_008344.1 497578 498705 D KEGG: neu:NE1634 hypothetical protein; hypothetical protein 497578..498705 Nitrosomonas eutropha C91 4272376 YP_746725.1 CDS Neut_0483 NC_008344.1 498716 500158 R TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: neu:NE1633 CBS domain:Divalent cation transporter; magnesium transporter complement(498716..500158) Nitrosomonas eutropha C91 4272377 YP_746726.1 CDS Neut_0485 NC_008344.1 501504 502424 D PFAM: Integrase, catalytic region; KEGG: nwi:Nwi_2917 integrase, catalytic region; integrase catalytic subunit 501504..502424 Nitrosomonas eutropha C91 4272379 YP_746727.1 CDS Neut_0486 NC_008344.1 502586 502891 D KEGG: tbd:Tbd_1307 hypothetical protein; hypothetical protein 502586..502891 Nitrosomonas eutropha C91 4272380 YP_746728.1 CDS Neut_0487 NC_008344.1 502949 503608 R TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: tbd:Tbd_2707 hemolysin-like protein; hemolysin III family channel protein complement(502949..503608) Nitrosomonas eutropha C91 4272466 YP_746729.1 CDS Neut_0488 NC_008344.1 503848 504150 R KEGG: plt:Plut_0890 hypothetical protein; hypothetical protein complement(503848..504150) Nitrosomonas eutropha C91 4272467 YP_746730.1 CDS Neut_0489 NC_008344.1 504175 504423 R PFAM: Transglycosylase-associated protein; KEGG: tcx:Tcr_0487 transglycosylase-associated protein; transglycosylase-associated protein complement(504175..504423) Nitrosomonas eutropha C91 4272468 YP_746731.1 CDS Neut_0490 NC_008344.1 504532 504858 R hypothetical protein complement(504532..504858) Nitrosomonas eutropha C91 4272469 YP_746732.1 CDS Neut_0491 NC_008344.1 505322 506062 D SMART: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: pfl:PFL_4066 transcriptional regulator-related protein; Crp family transcriptional regulator 505322..506062 Nitrosomonas eutropha C91 4272470 YP_746733.1 CDS Neut_0492 NC_008344.1 506093 506407 R PFAM: transport-associated; KEGG: dar:Daro_2047 transport-associated; transport-associated complement(506093..506407) Nitrosomonas eutropha C91 4272471 YP_746734.1 CDS Neut_0493 NC_008344.1 507277 507618 R KEGG: neu:NE1629 hypothetical protein; hypothetical protein complement(507277..507618) Nitrosomonas eutropha C91 4272472 YP_746735.1 CDS Neut_0494 NC_008344.1 507676 508509 R KEGG: neu:NE1629 hypothetical protein; hypothetical protein complement(507676..508509) Nitrosomonas eutropha C91 4272473 YP_746736.1 CDS mtgA NC_008344.1 508525 509259 R glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase complement(508525..509259) Nitrosomonas eutropha C91 4272474 YP_746737.1 CDS Neut_0496 NC_008344.1 509256 510089 R KEGG: neu:NE1627 shikimate / quinate 5-dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding, N-terminal domain protein; shikimate 5-dehydrogenase complement(509256..510089) Nitrosomonas eutropha C91 4272475 YP_746738.1 CDS Neut_0497 NC_008344.1 510123 510953 R TIGRFAM: TonB family protein; KEGG: neu:NE1626 putative TonB protein; TonB family protein complement(510123..510953) Nitrosomonas eutropha C91 4272476 YP_746739.1 CDS Neut_0498 NC_008344.1 511045 512904 R PFAM: ribonuclease II; KEGG: neu:NE1625 ribonuclease II domain; ribonuclease II complement(511045..512904) Nitrosomonas eutropha C91 4272477 YP_746740.1 CDS gltX NC_008344.1 513261 514652 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 513261..514652 Nitrosomonas eutropha C91 4272478 YP_746741.1 CDS metH NC_008344.1 514706 518419 D one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 514706..518419 Nitrosomonas eutropha C91 4272479 YP_746742.1 CDS Neut_0501 NC_008344.1 518591 519934 D converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 518591..519934 Nitrosomonas eutropha C91 4272480 YP_746743.1 CDS Neut_0502 NC_008344.1 520128 522035 D PFAM: Lytic transglycosylase, catalytic; KEGG: neu:NE1615 SLT domain; lytic transglycosylase, catalytic 520128..522035 Nitrosomonas eutropha C91 4272481 YP_746744.1 CDS cca NC_008344.1 522046 523284 D catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 522046..523284 Nitrosomonas eutropha C91 4272482 YP_746745.1 CDS Neut_0504 NC_008344.1 523259 524983 R PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: neu:NE1613 ABC transporter, fused permease and ATPase domains; ABC transporter-like protein complement(523259..524983) Nitrosomonas eutropha C91 4272005 YP_746746.1 CDS dapF NC_008344.1 525002 525838 R involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase complement(525002..525838) Nitrosomonas eutropha C91 4272006 YP_746747.1 CDS Neut_0506 NC_008344.1 526241 526678 D TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: neu:NE1611 bacterial general secretion pathway protein G; general secretion pathway protein G 526241..526678 Nitrosomonas eutropha C91 4272007 YP_746748.1 CDS Neut_0507 NC_008344.1 526697 527881 D PFAM: type II secretion system protein; KEGG: neu:NE1610 bacterial type II secretion system protein; type II secretion system protein 526697..527881 Nitrosomonas eutropha C91 4272008 YP_746749.1 CDS Neut_0508 NC_008344.1 527878 529572 D PFAM: type II secretion system protein E; KEGG: neu:NE1609 bacterial type II secretion system protein E; type II secretion system protein E 527878..529572 Nitrosomonas eutropha C91 4272009 YP_746750.1 CDS Neut_0509 NC_008344.1 529553 530398 D KEGG: neu:NE1608 hypothetical protein; hypothetical protein 529553..530398 Nitrosomonas eutropha C91 4272010 YP_746751.1 CDS Neut_0510 NC_008344.1 530391 530927 D PFAM: Fimbrial assembly family protein; KEGG: neu:NE1607 possible transmembrane protein; fimbrial assembly family protein 530391..530927 Nitrosomonas eutropha C91 4272011 YP_746752.1 CDS Neut_0511 NC_008344.1 530909 531466 D KEGG: neu:NE1606 possible transmembrane protein; transmembrane protein 530909..531466 Nitrosomonas eutropha C91 4272012 YP_746753.1 CDS Neut_0512 NC_008344.1 531582 532127 D KEGG: neu:NE1605 putative prolin-rich transmembrane protein; transmembrane protein 531582..532127 Nitrosomonas eutropha C91 4272013 YP_746754.1 CDS Neut_0513 NC_008344.1 532148 534451 D PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB, short N-terminal domain; KEGG: neu:NE1604 general (type II) secretion pathway (GSP) D protein; type II and III secretion system protein 532148..534451 Nitrosomonas eutropha C91 4272014 YP_746755.1 CDS Neut_0514 NC_008344.1 534472 534975 D KEGG: neu:NE1603 putative general secretion pathway gspG related transmembrane protein; general secretion pathway transmembrane protein 534472..534975 Nitrosomonas eutropha C91 4272015 YP_746756.1 CDS Neut_0515 NC_008344.1 534985 535440 D PFAM: type II secretion system protein G; KEGG: neu:NE1602 bacterial general secretion pathway protein G; type II secretion system protein G 534985..535440 Nitrosomonas eutropha C91 4272016 YP_746757.1 CDS Neut_0516 NC_008344.1 535440 535976 D KEGG: neu:NE1601 putative transmembrane protein; transmembrane protein 535440..535976 Nitrosomonas eutropha C91 4272017 YP_746758.1 CDS Neut_0517 NC_008344.1 536204 537913 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: neu:NE1600 TPR repeat; hypothetical protein 536204..537913 Nitrosomonas eutropha C91 4272018 YP_746759.1 CDS Neut_0518 NC_008344.1 537942 540005 R PFAM: von Willebrand factor, type A; KEGG: neu:NE2006 von Willebrand factor type A domain; von Willebrand factor, type A complement(537942..540005) Nitrosomonas eutropha C91 4272019 YP_746760.1 CDS Neut_0519 NC_008344.1 540011 540802 R PFAM: ATPase associated with various cellular activities, AAA_5; CbbQ/NirQ/NorQ C-terminal domain protein; KEGG: neu:NE2005 norQ protein; ATPase complement(540011..540802) Nitrosomonas eutropha C91 4272020 YP_746761.1 CDS Neut_0520 NC_008344.1 540834 542180 R PFAM: cytochrome c oxidase, subunit I; KEGG: neu:NE2004 cytochrome c oxidase, subunit I; cytochrome c oxidase subunit I complement(540834..542180) Nitrosomonas eutropha C91 4272021 YP_746762.1 CDS Neut_0521 NC_008344.1 542217 542669 R KEGG: neu:NE2003 nitric oxide reductase, cytochrome c-containing subunit; nitric-oxide reductase complement(542217..542669) Nitrosomonas eutropha C91 4272022 YP_746763.1 CDS Neut_0522 NC_008344.1 542901 544826 R PFAM: K+ potassium transporter; KEGG: gsu:GSU2350 potassium uptake protein, Kup system; K+ potassium transporter complement(542901..544826) Nitrosomonas eutropha C91 4273788 YP_746764.1 CDS Neut_0524 NC_008344.1 545743 546177 R PFAM: protein of unknown function DUF188; KEGG: dar:Daro_2879 protein of unknown function DUF188; hypothetical protein complement(545743..546177) Nitrosomonas eutropha C91 4273790 YP_746765.1 CDS Neut_0525 NC_008344.1 546247 548367 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; MHYT domain protein; KEGG: bxe:Bxe_B2102 putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains); diguanylate cyclase/phosphodiesterase complement(546247..548367) Nitrosomonas eutropha C91 4273791 YP_746766.1 CDS Neut_0526 NC_008344.1 549043 550224 D PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: neu:NE1273 HI0933-like protein; hypothetical protein 549043..550224 Nitrosomonas eutropha C91 4273792 YP_746767.1 CDS Neut_0527 NC_008344.1 550366 550983 R TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW; Methyltransferase type 11; Methyltransferase type 12; KEGG: neu:NE2187 SAM (and some other nucleotide) binding motif; methionine biosynthesis protein MetW complement(550366..550983) Nitrosomonas eutropha C91 4273793 YP_746768.1 CDS metX NC_008344.1 551014 552147 R Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase complement(551014..552147) Nitrosomonas eutropha C91 4273794 YP_746769.1 CDS Neut_0529 NC_008344.1 552246 553973 R TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: neu:NE2185 PEP-utilizing enzyme; phosphoenolpyruvate-protein phosphotransferase complement(552246..553973) Nitrosomonas eutropha C91 4273795 YP_746770.1 CDS Neut_0530 NC_008344.1 553970 554239 R TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: neu:NE2184 phosphocarrier HPr protein; phosphocarrier, HPr family protein complement(553970..554239) Nitrosomonas eutropha C91 4273796 YP_746771.1 CDS Neut_0531 NC_008344.1 554229 554633 R PFAM: PTS system fructose subfamily IIA component; KEGG: neu:NE2183 PTS system, unknown pentitol phosphotransferase enzyme IIA component; PTS system fructose subfamily transporter subunit IIA complement(554229..554633) Nitrosomonas eutropha C91 4273797 YP_746772.1 CDS Neut_0532 NC_008344.1 554982 556019 D PFAM: phosphoesterase, PA-phosphatase related; KEGG: pcr:Pcryo_1246 phosphoesterase, PA-phosphatase related; phosphoesterase, PA-phosphatase-like protein 554982..556019 Nitrosomonas eutropha C91 4273798 YP_746773.1 CDS Neut_0533 NC_008344.1 556345 556584 R hypothetical protein complement(556345..556584) Nitrosomonas eutropha C91 4273799 YP_746774.1 CDS Neut_0534 NC_008344.1 556619 557626 D PFAM: lipolytic enzyme, G-D-S-L family; KEGG: nmu:Nmul_A1186 lipolytic enzyme, G-D-S-L; G-D-S-L family lipolytic protein 556619..557626 Nitrosomonas eutropha C91 4273800 YP_746775.1 CDS Neut_0535 NC_008344.1 557692 558237 R PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: neu:NE2182 N-acetylmuramoyl-L-alanine amidase (family 2); N-acetyl-anhydromuranmyl-L-alanine amidase complement(557692..558237) Nitrosomonas eutropha C91 4273801 YP_746776.1 CDS tmk NC_008344.1 558327 558974 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 558327..558974 Nitrosomonas eutropha C91 4273802 YP_746777.1 CDS Neut_0537 NC_008344.1 559110 562328 R KEGG: dge:Dgeo_2012 type I site-specific deoxyribonuclease, HsdR family; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD/DEAH box helicase domain protein; type I site-specific deoxyribonuclease, HsdR family protein complement(559110..562328) Nitrosomonas eutropha C91 4273803 YP_746778.1 CDS Neut_0538 NC_008344.1 562483 563391 R hypothetical protein complement(562483..563391) Nitrosomonas eutropha C91 4273804 YP_746779.1 CDS Neut_0539 NC_008344.1 563388 563960 R hypothetical protein complement(563388..563960) Nitrosomonas eutropha C91 4272705 YP_746780.1 CDS Neut_0540 NC_008344.1 563957 565225 R PFAM: restriction modification system DNA specificity domain; KEGG: neu:NE0384 restriction modification system, type I; restriction modification system DNA specificity subunit complement(563957..565225) Nitrosomonas eutropha C91 4272706 YP_746781.1 CDS Neut_0541 NC_008344.1 565215 566843 R PFAM: N-6 DNA methylase; KEGG: dge:Dgeo_2017 N-6 DNA methylase; N-6 DNA methylase complement(565215..566843) Nitrosomonas eutropha C91 4272707 YP_746782.1 CDS Neut_0542 NC_008344.1 567050 568477 R PFAM: Na+/H+ antiporter NhaC; KEGG: neu:NE0601 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC complement(567050..568477) Nitrosomonas eutropha C91 4272708 YP_746783.1 CDS Neut_0543 NC_008344.1 568731 569795 D TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: neu:NE2180 putative DNA polymerase III (delta' subunit) protein; DNA polymerase III subunit delta' 568731..569795 Nitrosomonas eutropha C91 4272709 YP_746784.1 CDS Neut_0544 NC_008344.1 569799 570290 R KEGG: neu:NE2179 hypothetical protein; hypothetical protein complement(569799..570290) Nitrosomonas eutropha C91 4272710 YP_746785.1 CDS Neut_0545 NC_008344.1 570754 571755 D TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA family protein; KEGG: noc:Noc_1416 magnesium and cobalt transport protein CorA; magnesium and cobalt transport protein CorA 570754..571755 Nitrosomonas eutropha C91 4272711 YP_746786.1 CDS Neut_0547 NC_008344.1 572106 572219 D hypothetical protein 572106..572219 Nitrosomonas eutropha C91 4272713 YP_746787.1 CDS Neut_0548 NC_008344.1 572464 573615 D KEGG: neu:NE2283 hypothetical protein; hypothetical protein 572464..573615 Nitrosomonas eutropha C91 4272714 YP_746788.1 CDS Neut_0549 NC_008344.1 573647 573886 D SMART: zinc finger, CDGSH-type domain protein; KEGG: neu:NE2282 hypothetical protein; zinc finger CDGSH-type domain-containing protein 573647..573886 Nitrosomonas eutropha C91 4272715 YP_746789.1 CDS Neut_0550 NC_008344.1 574014 574559 D KEGG: neu:NE2056 hypothetical protein; hypothetical protein 574014..574559 Nitrosomonas eutropha C91 4272716 YP_746790.1 CDS Neut_0551 NC_008344.1 574714 575034 D KEGG: hch:HCH_03287 transposase and inactivated derivatives; transposase and inactivated derivatives 574714..575034 Nitrosomonas eutropha C91 4272717 YP_746791.1 CDS rpsL NC_008344.1 575692 576069 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 575692..576069 Nitrosomonas eutropha C91 4272719 YP_746792.1 CDS Neut_0554 NC_008344.1 576135 576605 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 576135..576605 Nitrosomonas eutropha C91 4272720 YP_746793.1 CDS Neut_0555 NC_008344.1 576676 578766 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 576676..578766 Nitrosomonas eutropha C91 4272721 YP_746794.1 CDS Neut_0556 NC_008344.1 578796 579986 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 578796..579986 Nitrosomonas eutropha C91 4272722 YP_746795.1 CDS rpsJ NC_008344.1 580067 580375 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 580067..580375 Nitrosomonas eutropha C91 4272212 YP_746796.1 CDS rplC NC_008344.1 580424 581077 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 580424..581077 Nitrosomonas eutropha C91 4272213 YP_746797.1 CDS rplD NC_008344.1 581095 581715 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 581095..581715 Nitrosomonas eutropha C91 4272214 YP_746798.1 CDS rplW NC_008344.1 581712 582047 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 581712..582047 Nitrosomonas eutropha C91 4272215 YP_746799.1 CDS rplB NC_008344.1 582047 582880 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 582047..582880 Nitrosomonas eutropha C91 4272216 YP_746800.1 CDS rpsS NC_008344.1 582885 583169 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 582885..583169 Nitrosomonas eutropha C91 4272217 YP_746801.1 CDS rplV NC_008344.1 583178 583510 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 583178..583510 Nitrosomonas eutropha C91 4272218 YP_746802.1 CDS rpsC NC_008344.1 583549 584196 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 583549..584196 Nitrosomonas eutropha C91 4272219 YP_746803.1 CDS rplP NC_008344.1 584281 584697 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 584281..584697 Nitrosomonas eutropha C91 4272220 YP_746804.1 CDS rpsQ NC_008344.1 584895 585149 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 584895..585149 Nitrosomonas eutropha C91 4272222 YP_746805.1 CDS rplN NC_008344.1 585228 585596 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 585228..585596 Nitrosomonas eutropha C91 4272223 YP_746806.1 CDS rplX NC_008344.1 585609 585932 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 585609..585932 Nitrosomonas eutropha C91 4272224 YP_746807.1 CDS rplE NC_008344.1 585948 586487 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 585948..586487 Nitrosomonas eutropha C91 4272225 YP_746808.1 CDS rpsN NC_008344.1 586497 586802 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 586497..586802 Nitrosomonas eutropha C91 4272226 YP_746809.1 CDS rpsH NC_008344.1 586876 587271 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 586876..587271 Nitrosomonas eutropha C91 4272227 YP_746810.1 CDS rplF NC_008344.1 587284 587823 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 587284..587823 Nitrosomonas eutropha C91 4272228 YP_746811.1 CDS rplR NC_008344.1 587839 588201 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 587839..588201 Nitrosomonas eutropha C91 4272688 YP_746812.1 CDS rpsE NC_008344.1 588218 588751 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 588218..588751 Nitrosomonas eutropha C91 4272689 YP_746813.1 CDS rpmD NC_008344.1 588757 588942 D L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 588757..588942 Nitrosomonas eutropha C91 4272690 YP_746814.1 CDS Neut_0577 NC_008344.1 588945 589406 D PFAM: ribosomal protein L15; KEGG: neu:NE0420 ribosomal protein L15; 50S ribosomal protein L15 588945..589406 Nitrosomonas eutropha C91 4272691 YP_746815.1 CDS secY NC_008344.1 589396 590718 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 589396..590718 Nitrosomonas eutropha C91 4272692 YP_746816.1 CDS infA NC_008344.1 590729 590947 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 590729..590947 Nitrosomonas eutropha C91 4272693 YP_746817.1 CDS rpsM NC_008344.1 591134 591493 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 591134..591493 Nitrosomonas eutropha C91 4272694 YP_746818.1 CDS Neut_0581 NC_008344.1 591533 591922 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 591533..591922 Nitrosomonas eutropha C91 4272695 YP_746819.1 CDS rpsD NC_008344.1 591937 592563 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 591937..592563 Nitrosomonas eutropha C91 4272696 YP_746820.1 CDS Neut_0583 NC_008344.1 592590 593597 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 592590..593597 Nitrosomonas eutropha C91 4272697 YP_746821.1 CDS rplQ NC_008344.1 593584 593976 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 593584..593976 Nitrosomonas eutropha C91 4272698 YP_746822.1 CDS Neut_0585 NC_008344.1 594297 594614 R PFAM: protein of unknown function UPF0125; KEGG: neu:NE0428 hypothetical protein; hypothetical protein complement(594297..594614) Nitrosomonas eutropha C91 4272700 YP_746823.1 CDS Neut_0586 NC_008344.1 594598 595041 R PFAM: cyclase/dehydrase; KEGG: neu:NE0429 hypothetical protein; cyclase/dehydrase complement(594598..595041) Nitrosomonas eutropha C91 4272701 YP_746824.1 CDS smpB NC_008344.1 595146 595595 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; ssrA-binding protein 595146..595595 Nitrosomonas eutropha C91 4272702 YP_746825.1 CDS Neut_0588 NC_008344.1 595605 596675 D PFAM: cytochrome oxidase assembly; KEGG: neu:NE0431 cytochrome oxidase assembly; cytochrome oxidase assembly 595605..596675 Nitrosomonas eutropha C91 4272703 YP_746826.1 CDS Neut_0589 NC_008344.1 596764 597183 D PFAM: RDD domain containing protein; KEGG: neu:NE0432 putative transmembrane protein; RDD domain-containing protein 596764..597183 Nitrosomonas eutropha C91 4272704 YP_746827.1 CDS Neut_0590 NC_008344.1 597546 599129 D KEGG: neu:NE0433 DNA polymerase III (subunits tau and gamma) protein; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; DNA polymerase III subunits gamma and tau 597546..599129 Nitrosomonas eutropha C91 4272673 YP_746828.1 CDS Neut_0591 NC_008344.1 599146 599469 D PFAM: conserved hypothetical protein 103; KEGG: neu:NE0434 DUF149:conserved hypothetical protein 103; hypothetical protein 599146..599469 Nitrosomonas eutropha C91 4272674 YP_746829.1 CDS Neut_0592 NC_008344.1 599523 600341 D TIGRFAM: Pseudouridine synthase, Rsu; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: neu:NE0435 possible pseudouridylate synthase family 1; pseudouridine synthase, Rsu 599523..600341 Nitrosomonas eutropha C91 4272675 YP_746830.1 CDS Neut_0593 NC_008344.1 600371 601291 R involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase complement(600371..601291) Nitrosomonas eutropha C91 4272676 YP_746831.1 CDS Neut_0594 NC_008344.1 601339 601842 D PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: neu:NE0437 cytidine and deoxycytidylate deaminase zinc-binding region; zinc-binding CMP/dCMP deaminase 601339..601842 Nitrosomonas eutropha C91 4272677 YP_746832.1 CDS Neut_0595 NC_008344.1 601839 602318 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: nmu:Nmul_A1226 ErfK/YbiS/YcfS/YnhG; ErfK/YbiS/YcfS/YnhG family protein 601839..602318 Nitrosomonas eutropha C91 4272678 YP_746833.1 CDS Neut_0596 NC_008344.1 602380 603990 D malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 602380..603990 Nitrosomonas eutropha C91 4272679 YP_746834.1 CDS Neut_0597 NC_008344.1 604039 604869 R KEGG: neu:NE0439 phosphoserine phosphatase protein; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; phosphoserine phosphatase SerB complement(604039..604869) Nitrosomonas eutropha C91 4272680 YP_746835.1 CDS Neut_0598 NC_008344.1 604957 606432 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: neu:NE0440 domain of unknown function, DUF9; diguanylate cyclase complement(604957..606432) Nitrosomonas eutropha C91 4272681 YP_746836.1 CDS Neut_0599 NC_008344.1 606689 608182 D catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 606689..608182 Nitrosomonas eutropha C91 4272682 YP_746837.1 CDS Neut_0600 NC_008344.1 608214 608642 D PFAM: DNA polymerase III chi subunit, HolC; KEGG: neu:NE0442 putative DNA polymerase III (chi subunit) protein; DNA polymerase III chi subunit, HolC 608214..608642 Nitrosomonas eutropha C91 4272683 YP_746838.1 CDS Neut_0601 NC_008344.1 608715 609116 D KEGG: neu:NE0443 hypothetical protein; hypothetical protein 608715..609116 Nitrosomonas eutropha C91 4272684 YP_746839.1 CDS valS NC_008344.1 609180 611933 D valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 609180..611933 Nitrosomonas eutropha C91 4272685 YP_746840.1 CDS hemE NC_008344.1 612029 613099 D catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 612029..613099 Nitrosomonas eutropha C91 4272686 YP_746841.1 CDS Neut_0604 NC_008344.1 613254 614060 R KEGG: neu:NE0665 hypothetical protein; hypothetical protein complement(613254..614060) Nitrosomonas eutropha C91 4272687 YP_746842.1 CDS Neut_0605 NC_008344.1 614210 615097 R Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha complement(614210..615097) Nitrosomonas eutropha C91 4272499 YP_746843.1 CDS sucC NC_008344.1 615127 616299 R catalyzes the formation of malyl-CoA from malate and CoA; malate--CoA ligase subunit beta complement(615127..616299) Nitrosomonas eutropha C91 4272500 YP_746844.1 CDS Neut_0607 NC_008344.1 616473 617423 R PFAM: HpcH/HpaI aldolase; KEGG: neu:NE1809 probable beta subunit of citrate lyase; citryl-CoA lyase complement(616473..617423) Nitrosomonas eutropha C91 4272501 YP_746845.1 CDS Neut_0608 NC_008344.1 617674 619182 R TIGRFAM: glycogen/starch synthases, ADP-glucose type; PFAM: glycosyl transferase, group 1; Starch synthase catalytic domain protein; KEGG: neu:NE2264 glycosyl transferase group 1; glycogen/starch synthase complement(617674..619182) Nitrosomonas eutropha C91 4272502 YP_746846.1 CDS pgi NC_008344.1 619203 620837 R functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase complement(619203..620837) Nitrosomonas eutropha C91 4272503 YP_746847.1 CDS Neut_0610 NC_008344.1 620866 622044 R catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA; beta-ketothiolase complement(620866..622044) Nitrosomonas eutropha C91 4272504 YP_746848.1 CDS hslU NC_008344.1 622054 623385 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU complement(622054..623385) Nitrosomonas eutropha C91 4272505 YP_746849.1 CDS Neut_0612 NC_008344.1 623420 623941 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit complement(623420..623941) Nitrosomonas eutropha C91 4272506 YP_746850.1 CDS Neut_0613 NC_008344.1 624150 624353 R Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega complement(624150..624353) Nitrosomonas eutropha C91 4272507 YP_746851.1 CDS gmk NC_008344.1 624404 625009 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(624404..625009) Nitrosomonas eutropha C91 4272508 YP_746852.1 CDS ntpA NC_008344.1 625286 625768 R converts dATP to dAMP and pyrophosphate; dATP pyrophosphohydrolase complement(625286..625768) Nitrosomonas eutropha C91 4272510 YP_746853.1 CDS aspS NC_008344.1 625782 627563 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(625782..627563) Nitrosomonas eutropha C91 4272511 YP_746854.1 CDS Neut_0617 NC_008344.1 627628 627945 R TIGRFAM: putative regulatory protein, FmdB family; KEGG: neu:NE2251 type I antifreeze protein; FmdB family regulatory protein complement(627628..627945) Nitrosomonas eutropha C91 4272512 YP_746855.1 CDS Neut_0618 NC_008344.1 628058 629509 R KEGG: neu:NE2250 putative mannose-1-phosphate guanylyltransferase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase, type II; Nucleotidyl transferase; Cupin 2, conserved barrel domain protein; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase complement(628058..629509) Nitrosomonas eutropha C91 4272513 YP_746856.1 CDS Neut_0619 NC_008344.1 629573 630685 R PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: neu:NE2249 UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase complement(629573..630685) Nitrosomonas eutropha C91 4272514 YP_746857.1 CDS Neut_0620 NC_008344.1 631238 631642 D KEGG: bbr:BB2499 hypothetical protein; hypothetical protein 631238..631642 Nitrosomonas eutropha C91 4272515 YP_746858.1 CDS Neut_0621 NC_008344.1 631635 632858 D PFAM: NnrS family protein; KEGG: bpa:BPP1424 putative membrane protein; NnrS family protein 631635..632858 Nitrosomonas eutropha C91 4271881 YP_746859.1 CDS Neut_0622 NC_008344.1 632899 633339 D PFAM: protein of unknown function DUF474; KEGG: bbr:BB2497 hypothetical protein; hypothetical protein 632899..633339 Nitrosomonas eutropha C91 4271882 YP_746860.1 CDS Neut_0623 NC_008344.1 633450 633935 D putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; nucleotide-binding protein 633450..633935 Nitrosomonas eutropha C91 4271883 YP_746861.1 CDS Neut_0624 NC_008344.1 634044 635489 R PFAM: phosphate-selective porin O and P; KEGG: neu:NE2247 hypothetical protein; phosphate-selective porin O and P complement(634044..635489) Nitrosomonas eutropha C91 4271884 YP_746862.1 CDS Neut_0625 NC_008344.1 635826 636770 R PFAM: Integrase, catalytic region; KEGG: nwi:Nwi_2917 integrase, catalytic region; integrase catalytic subunit complement(635826..636770) Nitrosomonas eutropha C91 4271885 YP_746863.1 CDS Neut_0626 NC_008344.1 636894 637661 R KEGG: neu:NE2246 hypothetical protein; hypothetical protein complement(636894..637661) Nitrosomonas eutropha C91 4271886 YP_746864.1 CDS Neut_0627 NC_008344.1 637777 638550 R KEGG: neu:NE2245 hypothetical protein; hypothetical protein complement(637777..638550) Nitrosomonas eutropha C91 4271887 YP_746865.1 CDS Neut_0628 NC_008344.1 638562 639278 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: neu:NE2244 ATPase component ABC-type (unclassified) transport system; ABC transporter-like protein 638562..639278 Nitrosomonas eutropha C91 4271888 YP_746866.1 CDS Neut_0629 NC_008344.1 639271 640719 D KEGG: neu:NE2243 hypothetical protein; hypothetical protein 639271..640719 Nitrosomonas eutropha C91 4271889 YP_746867.1 CDS Neut_0630 NC_008344.1 641004 642215 R PFAM: protein of unknown function DUF214; KEGG: neu:NE2242 DUF214; hypothetical protein complement(641004..642215) Nitrosomonas eutropha C91 4271890 YP_746868.1 CDS Neut_0631 NC_008344.1 642953 643879 D PFAM: Integrase, catalytic region; KEGG: nwi:Nwi_2917 integrase, catalytic region; integrase catalytic subunit 642953..643879 Nitrosomonas eutropha C91 4271891 YP_746869.1 CDS Neut_0632 NC_008344.1 643911 644138 D TIGRFAM: prevent-host-death family protein; KEGG: bur:Bcep18194_A3825 prevent-host-death protein; prevent-host-death family protein 643911..644138 Nitrosomonas eutropha C91 4271892 YP_746870.1 CDS Neut_0633 NC_008344.1 644176 644439 D KEGG: tbd:Tbd_2422 hypothetical protein; hypothetical protein 644176..644439 Nitrosomonas eutropha C91 4271893 YP_746871.1 CDS Neut_0634 NC_008344.1 644644 645897 R PFAM: protein of unknown function DUF214; KEGG: neu:NE2240 DUF214; hypothetical protein complement(644644..645897) Nitrosomonas eutropha C91 4271894 YP_746872.1 CDS Neut_0635 NC_008344.1 646072 647667 D PFAM: FAD linked oxidase domain protein; KEGG: cps:CPS_0526 FAD-binding protein; FAD linked oxidase domain-containing protein 646072..647667 Nitrosomonas eutropha C91 4271895 YP_746873.1 CDS Neut_0636 NC_008344.1 647852 648769 D TIGRFAM: PEP motif putative anchor-like; KEGG: rru:Rru_A3095 hypothetical protein; PEP motif-containing protein 647852..648769 Nitrosomonas eutropha C91 4271896 YP_746874.1 CDS Neut_0637 NC_008344.1 648824 649807 R PFAM: fatty acid desaturase; KEGG: neu:NE2233 fatty acid desaturase, type 2; fatty acid desaturase complement(648824..649807) Nitrosomonas eutropha C91 4271897 YP_746875.1 CDS Neut_0638 NC_008344.1 649984 650883 R KEGG: neu:NE2229 possible long-chain N-acyl amino acid synthase; long-chain N-acyl amino acid synthase complement(649984..650883) Nitrosomonas eutropha C91 4272194 YP_746876.1 CDS Neut_0639 NC_008344.1 651458 651601 D KEGG: neu:NE2241 hypothetical protein; hypothetical protein 651458..651601 Nitrosomonas eutropha C91 4272195 YP_746877.1 CDS Neut_0640 NC_008344.1 651619 651798 D KEGG: neu:NE2241 hypothetical protein; hypothetical protein 651619..651798 Nitrosomonas eutropha C91 4272196 YP_746878.1 CDS Neut_0641 NC_008344.1 651782 651904 D KEGG: neu:NE2241 hypothetical protein; hypothetical protein 651782..651904 Nitrosomonas eutropha C91 4272197 YP_746879.1 CDS Neut_0642 NC_008344.1 652289 653851 D PFAM: CBS domain containing protein; transporter-associated region; Integral membrane protein TerC; KEGG: neu:NE2227 CBS domain; integral membrane protein TerC 652289..653851 Nitrosomonas eutropha C91 4272198 YP_746880.1 CDS Neut_0643 NC_008344.1 654368 655270 D PFAM: Sel1 domain protein repeat-containing protein; Lytic transglycosylase, catalytic; KEGG: neu:NE2226 SLT domain; lytic transglycosylase, catalytic 654368..655270 Nitrosomonas eutropha C91 4272199 YP_746881.1 CDS Neut_0644 NC_008344.1 655449 656108 R KEGG: neu:NE2223 HhH-GPD:iron-sulfur cluster loop (FCL); TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; endonuclease III complement(655449..656108) Nitrosomonas eutropha C91 4272200 YP_746882.1 CDS Neut_0645 NC_008344.1 656105 656761 R TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: neu:NE2222 3Fe-4S ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding domain; RnfABCDGE type electron transport complex subunit B complement(656105..656761) Nitrosomonas eutropha C91 4272201 YP_746883.1 CDS Neut_0646 NC_008344.1 656751 657779 R catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 complement(656751..657779) Nitrosomonas eutropha C91 4272202 YP_746884.1 CDS Neut_0647 NC_008344.1 657780 658493 R Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase complement(657780..658493) Nitrosomonas eutropha C91 4272203 YP_746885.1 CDS aat NC_008344.1 658493 659197 R leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase complement(658493..659197) Nitrosomonas eutropha C91 4272204 YP_746886.1 CDS Neut_0649 NC_008344.1 659278 659526 R hypothetical protein complement(659278..659526) Nitrosomonas eutropha C91 4272205 YP_746887.1 CDS Neut_0650 NC_008344.1 659602 660483 D KEGG: neu:NE2218 hypothetical protein; hypothetical protein 659602..660483 Nitrosomonas eutropha C91 4272206 YP_746888.1 CDS Neut_0651 NC_008344.1 660666 662048 R TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: neu:NE2217 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diamino pimelate ligase transmembrane protein; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase complement(660666..662048) Nitrosomonas eutropha C91 4272207 YP_746889.1 CDS Neut_0652 NC_008344.1 662173 663345 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: neu:NE2216 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 662173..663345 Nitrosomonas eutropha C91 4272208 YP_746890.1 CDS Neut_0653 NC_008344.1 663369 664307 R PFAM: NUDIX hydrolase; thiamine monophosphate synthase; KEGG: neu:NE2215 NUDIX hydrolase / thiamine phosphate synthase; hypothetical protein complement(663369..664307) Nitrosomonas eutropha C91 4272209 YP_746891.1 CDS Neut_0654 NC_008344.1 664320 665213 R PFAM: protein of unknown function DUF815; SMART: AAA ATPase; KEGG: neu:NE2214 AAA ATPase superfamily; hypothetical protein complement(664320..665213) Nitrosomonas eutropha C91 4272210 YP_746892.1 CDS argJ NC_008344.1 665194 666423 R bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithineacetyltransferase/N-acetylglutamate synthase complement(665194..666423) Nitrosomonas eutropha C91 4272211 YP_746893.1 CDS Neut_0656 NC_008344.1 666516 666998 D PFAM: Rhodanese domain protein; KEGG: neu:NE2212 putative transmembrane protein; rhodanese domain-containing protein 666516..666998 Nitrosomonas eutropha C91 4273086 YP_746894.1 CDS Neut_0657 NC_008344.1 666998 667285 D TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: neu:NE2211 glutaredoxin; glutaredoxin 3 666998..667285 Nitrosomonas eutropha C91 4273087 YP_746895.1 CDS Neut_0658 NC_008344.1 667360 667842 D molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 667360..667842 Nitrosomonas eutropha C91 4273088 YP_746896.1 CDS Neut_0659 NC_008344.1 667846 668325 D PFAM: protein of unknown function DUF1058; KEGG: neu:NE2209 hypothetical protein; hypothetical protein 667846..668325 Nitrosomonas eutropha C91 4273089 YP_746897.1 CDS gpsA NC_008344.1 668322 669311 D catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 668322..669311 Nitrosomonas eutropha C91 4273090 YP_746898.1 CDS Neut_0661 NC_008344.1 669498 669770 D PFAM: histone family protein DNA-binding protein; KEGG: neu:NE2207 bacterial histone-like DNA-binding protein; histone family protein DNA-binding protein 669498..669770 Nitrosomonas eutropha C91 4273091 YP_746899.1 CDS Neut_0662 NC_008344.1 670110 672002 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: neu:NE2206 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 670110..672002 Nitrosomonas eutropha C91 4273094 YP_746900.1 CDS Neut_0663 NC_008344.1 672032 672826 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: neu:NE2205 short-chain dehydrogenase/reductase (SDR) superfamily; short-chain dehydrogenase/reductase SDR complement(672032..672826) Nitrosomonas eutropha C91 4273095 YP_746901.1 CDS Neut_0664 NC_008344.1 673155 675377 D PFAM: RNA binding S1 domain protein; SMART: Resolvase, RNase H domain protein fold; KEGG: neu:NE2197 S1 RNA binding domain; RNA-binding S1 domain-containing protein 673155..675377 Nitrosomonas eutropha C91 4273096 YP_746902.1 CDS Neut_0665 NC_008344.1 675395 675619 R KEGG: sfx:S2706 hypothetical protein; hypothetical protein complement(675395..675619) Nitrosomonas eutropha C91 4273097 YP_746903.1 CDS Neut_0666 NC_008344.1 675616 676353 R PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: sfx:S2707 resolvase; resolvase domain-containing protein complement(675616..676353) Nitrosomonas eutropha C91 4273098 YP_746904.1 CDS Neut_0667 NC_008344.1 676501 676833 D PFAM: regulatory protein, ArsR; KEGG: sfx:S2708 putative transcriptional regulator; arsR family transcriptional regulator 676501..676833 Nitrosomonas eutropha C91 4273099 YP_746905.1 CDS Neut_0668 NC_008344.1 676830 677597 D PFAM: NADPH-dependent FMN reductase; KEGG: sfx:S2709 putative arsenical resistance protein; NADPH-dependent FMN reductase 676830..677597 Nitrosomonas eutropha C91 4273100 YP_746906.1 CDS Neut_0669 NC_008344.1 677594 678100 D PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: sfx:S2710 hypothetical arsenate reductase; protein tyrosine phosphatase 677594..678100 Nitrosomonas eutropha C91 4273068 YP_746907.1 CDS Neut_0670 NC_008344.1 678097 679164 D PFAM: Bile acid:sodium symporter; KEGG: sfx:S2711 putative sodium bile acid symporter family protein; bile acid:sodium symporter 678097..679164 Nitrosomonas eutropha C91 4273069 YP_746908.1 CDS Neut_0671 NC_008344.1 679519 679743 R KEGG: xcv:XCV2162 hypothetical protein; hypothetical protein complement(679519..679743) Nitrosomonas eutropha C91 4273070 YP_746909.1 CDS Neut_0672 NC_008344.1 679807 680055 R hypothetical protein complement(679807..680055) Nitrosomonas eutropha C91 4273071 YP_746910.1 CDS Neut_0673 NC_008344.1 680060 681487 R PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: sfx:S2716 putative mating pair formation protein; TrbL/VirB6 plasmid conjugal transfer protein complement(680060..681487) Nitrosomonas eutropha C91 4273072 YP_746911.1 CDS Neut_0674 NC_008344.1 681498 681734 R hypothetical protein complement(681498..681734) Nitrosomonas eutropha C91 4273073 YP_746912.1 CDS Neut_0675 NC_008344.1 681747 682526 R KEGG: sfx:S2718 putative mating pair formation protein; conjugal transfer protein TrbJ complement(681747..682526) Nitrosomonas eutropha C91 4273074 YP_746913.1 CDS Neut_0676 NC_008344.1 682667 682855 R KEGG: sfx:S2719 putative stabilization protein; stabilization protein complement(682667..682855) Nitrosomonas eutropha C91 4273075 YP_746914.1 CDS Neut_0677 NC_008344.1 683888 684769 R PFAM: replication C family protein; KEGG: sfx:S2720 putative replication protein C; replication C family protein complement(683888..684769) Nitrosomonas eutropha C91 4273076 YP_746915.1 CDS Neut_0678 NC_008344.1 684756 685583 R KEGG: sfx:S2721 putative DNA helicase; DNA helicase complement(684756..685583) Nitrosomonas eutropha C91 4273077 YP_746916.1 CDS Neut_0679 NC_008344.1 685588 685809 R PFAM: Prophage CP4-57 regulatory; KEGG: sfx:S2722 hypothetical bacteriophage protein; phage transcriptional regulator AlpA complement(685588..685809) Nitrosomonas eutropha C91 4273078 YP_746917.1 CDS Neut_0680 NC_008344.1 685957 687159 R PFAM: phage integrase family protein; KEGG: sfx:S2723 putative integrase; phage integrase family protein complement(685957..687159) Nitrosomonas eutropha C91 4273079 YP_746918.1 CDS Neut_0681 NC_008344.1 687429 687740 D KEGG: neu:NE2197 S1 RNA binding domain; S1 RNA-binding domain-containing protein 687429..687740 Nitrosomonas eutropha C91 4273080 YP_746919.1 CDS Neut_0682 NC_008344.1 687751 688557 D PFAM: UbiE/COQ5 methyltransferase; methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: mbo:Mb0862 hypothetical protein; methyltransferase type 11 687751..688557 Nitrosomonas eutropha C91 4273081 YP_746920.1 CDS Neut_0683 NC_008344.1 688554 689006 D KEGG: neu:NE0602 hypothetical protein; hypothetical protein 688554..689006 Nitrosomonas eutropha C91 4273082 YP_746921.1 CDS Neut_0684 NC_008344.1 689148 689960 R PFAM: N-acetyltransferase; KEGG: ssn:SSO_1662 putative N-hydroxyarylamine O-acetyltransferase; N-hydroxyarylamine O-acetyltransferase complement(689148..689960) Nitrosomonas eutropha C91 4273083 YP_746922.1 CDS Neut_0685 NC_008344.1 690068 690982 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: neu:NE2196 integral membrane protein, DUF6; hypothetical protein complement(690068..690982) Nitrosomonas eutropha C91 4273084 YP_746923.1 CDS Neut_0686 NC_008344.1 691070 692353 R TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: vch:VC1275 hypothetical protein; TRAP dicarboxylate transporter subunit DctM complement(691070..692353) Nitrosomonas eutropha C91 4273085 YP_746924.1 CDS Neut_0687 NC_008344.1 692436 692990 R PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: vch:VC1274 hypothetical protein; tripartite ATP-independent periplasmic transporter DctQ complement(692436..692990) Nitrosomonas eutropha C91 4273051 YP_746925.1 CDS Neut_0688 NC_008344.1 693065 694429 R PFAM: peptidase U62, modulator of DNA gyrase; KEGG: neu:NE2195 putative modulator of DNA gyrase; C69 family peptidase complement(693065..694429) Nitrosomonas eutropha C91 4273052 YP_746926.1 CDS Neut_0689 NC_008344.1 694675 695205 D PFAM: protein of unknown function DUF615; KEGG: neu:NE2194 hypothetical protein; hypothetical protein 694675..695205 Nitrosomonas eutropha C91 4273053 YP_746927.1 CDS Neut_0690 NC_008344.1 695365 695748 D KEGG: neu:NE2193 hypothetical protein; hypothetical protein 695365..695748 Nitrosomonas eutropha C91 4273054 YP_746928.1 CDS Neut_0691 NC_008344.1 695773 696546 D KEGG: neu:NE2192 exodeoxyribonuclease III:exodeoxyribonuclease III xth; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III Xth 695773..696546 Nitrosomonas eutropha C91 4273055 YP_746929.1 CDS Neut_0692 NC_008344.1 696543 697937 D PFAM: major facilitator superfamily MFS_1; KEGG: neu:NE2191 putative transport transmembrane protein; major facilitator superfamily transporter 696543..697937 Nitrosomonas eutropha C91 4273056 YP_746930.1 CDS Neut_0693 NC_008344.1 698128 698412 R hypothetical protein complement(698128..698412) Nitrosomonas eutropha C91 4273057 YP_746931.1 CDS Neut_0694 NC_008344.1 698614 698964 R PFAM: cytochrome C oxidase subunit IV; KEGG: reu:Reut_A0985 prokaryotic cytochrome c oxidase subunit IV; cytochrome C oxidase subunit IV complement(698614..698964) Nitrosomonas eutropha C91 4273058 YP_746932.1 CDS Neut_0695 NC_008344.1 698961 699632 R PFAM: cytochrome c oxidase, subunit III; KEGG: sbo:SBO_0324 cytochrome o ubiquinol oxidase subunit III; cytochrome c oxidase subunit III complement(698961..699632) Nitrosomonas eutropha C91 4273059 YP_746933.1 CDS Neut_0696 NC_008344.1 699629 701740 R PFAM: cytochrome c oxidase, subunit I; KEGG: mfa:Mfla_1294 cytochrome-c oxidase; cytochrome-c oxidase complement(699629..701740) Nitrosomonas eutropha C91 4273060 YP_746934.1 CDS Neut_0697 NC_008344.1 701744 702745 R PFAM: cytochrome c oxidase, subunit II; KEGG: rso:RSc1858 probable transmembrane cytochrome O ubiquinol oxidase (subunit II) oxidoreductase protein; cytochrome c oxidase subunit II complement(701744..702745) Nitrosomonas eutropha C91 4273061 YP_746935.1 CDS Neut_0698 NC_008344.1 702998 703885 D KEGG: dar:Daro_1735 UTP--glucose-1-phosphate uridylyltransferase, bacterial and archaeal type; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; UTP-glucose-1-phosphate uridylyltransferase 702998..703885 Nitrosomonas eutropha C91 4273062 YP_746936.1 CDS Neut_0699 NC_008344.1 704156 704782 D KEGG: neu:NE2001 hypothetical protein; hypothetical protein 704156..704782 Nitrosomonas eutropha C91 4273063 YP_746937.1 CDS Neut_0700 NC_008344.1 704802 706160 D PFAM: aldehyde dehydrogenase; KEGG: neu:NE2000 aldehyde dehydrogenase family; aldehyde dehydrogenase 704802..706160 Nitrosomonas eutropha C91 4273064 YP_746938.1 CDS Neut_0701 NC_008344.1 706189 707904 D KEGG: neu:NE0823 TPR repeat; hypothetical protein 706189..707904 Nitrosomonas eutropha C91 4273065 YP_746939.1 CDS Neut_0702 NC_008344.1 707995 709833 R PFAM: AMP-dependent synthetase and ligase; KEGG: neu:NE1549 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(707995..709833) Nitrosomonas eutropha C91 4273066 YP_746940.1 CDS fadE NC_008344.1 709830 712166 R functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase complement(709830..712166) Nitrosomonas eutropha C91 4273067 YP_746941.1 CDS Neut_0704 NC_008344.1 712185 712541 R hypothetical protein complement(712185..712541) Nitrosomonas eutropha C91 4273033 YP_746942.1 CDS Neut_0705 NC_008344.1 712637 713017 R PFAM: DoxX family protein; KEGG: neu:NE1546 hypothetical protein; DoxX family protein complement(712637..713017) Nitrosomonas eutropha C91 4273034 YP_746943.1 CDS Neut_0706 NC_008344.1 713065 713928 R PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: neu:NE1545 DUF209; pirin domain-containing protein complement(713065..713928) Nitrosomonas eutropha C91 4273035 YP_746944.1 CDS Neut_0707 NC_008344.1 714064 714996 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: neu:NE1544 bacterial regulatory protein, LysR family; LysR family transcriptional regulator 714064..714996 Nitrosomonas eutropha C91 4273036 YP_746945.1 CDS Neut_0708 NC_008344.1 715167 716306 D TIGRFAM: PEP motif putative anchor-like; KEGG: neu:NE1702 hypothetical protein; PEP motif-containing protein 715167..716306 Nitrosomonas eutropha C91 4273037 YP_746946.1 CDS Neut_0709 NC_008344.1 716393 717088 D PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: pol:Bpro_3391 oxidoreductase FAD/NAD(P)-binding; oxidoreductase FAD/NAD(P)-binding subunit 716393..717088 Nitrosomonas eutropha C91 4273038 YP_746947.1 CDS Neut_0710 NC_008344.1 717225 718217 R PFAM: multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: neu:NE1543 multicopper oxidase type 1; ferroxidase complement(717225..718217) Nitrosomonas eutropha C91 4273039 YP_746948.1 CDS Neut_0711 NC_008344.1 718426 719172 R KEGG: neu:NE1542 hypothetical protein; hypothetical protein complement(718426..719172) Nitrosomonas eutropha C91 4273040 YP_746949.1 CDS Neut_0712 NC_008344.1 719318 719506 R KEGG: neu:NE1541 hypothetical protein; hypothetical protein complement(719318..719506) Nitrosomonas eutropha C91 4273041 YP_746950.1 CDS Neut_0713 NC_008344.1 719854 720231 R KEGG: neu:NE1211 putative ABC transporter permease protein; hypothetical protein complement(719854..720231) Nitrosomonas eutropha C91 4273042 YP_746951.1 CDS Neut_0714 NC_008344.1 720323 722200 D PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: mac:MA3032 alpha-amylase; alpha amylase 720323..722200 Nitrosomonas eutropha C91 4273043 YP_746952.1 CDS Neut_0715 NC_008344.1 722308 722580 D KEGG: neu:NE1206 glutathione peroxidase; hypothetical protein 722308..722580 Nitrosomonas eutropha C91 4273044 YP_746953.1 CDS Neut_0716 NC_008344.1 722636 724729 R TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: neu:NE1540 TonB-dependent receptor protein; TonB-dependent heme/hemoglobin receptor family protein complement(722636..724729) Nitrosomonas eutropha C91 4273045 YP_746954.1 CDS Neut_0717 NC_008344.1 724826 726547 R PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: neu:NE1539 hypothetical protein; cobalamin (vitamin B12) biosynthesis CbiX protein complement(724826..726547) Nitrosomonas eutropha C91 4273046 YP_746955.1 CDS Neut_0718 NC_008344.1 726620 727921 R KEGG: neu:NE1538 hypothetical protein; hypothetical protein complement(726620..727921) Nitrosomonas eutropha C91 4273047 YP_746956.1 CDS Neut_0719 NC_008344.1 728136 729377 D PFAM: glycosyl hydrolase, BNR repeat-containing protein; KEGG: neu:NE1537 BNR repeat; BNR repeat-containing glycosyl hydrolase 728136..729377 Nitrosomonas eutropha C91 4273048 YP_746957.1 CDS Neut_0720 NC_008344.1 729497 731986 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: neu:NE1536 TonB-dependent receptor protein; TonB-dependent receptor 729497..731986 Nitrosomonas eutropha C91 4273049 YP_746958.1 CDS Neut_0721 NC_008344.1 732301 734430 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: neu:NE1531 TonB-dependent receptor protein; TonB-dependent receptor 732301..734430 Nitrosomonas eutropha C91 4273050 YP_746959.1 CDS Neut_0722 NC_008344.1 734496 735734 D KEGG: neu:NE1530 putative signal peptide protein; signal peptide protein 734496..735734 Nitrosomonas eutropha C91 4273016 YP_746960.1 CDS Neut_0723 NC_008344.1 735737 736234 D KEGG: neu:NE1529 possible signal peptide protein; signal peptide protein 735737..736234 Nitrosomonas eutropha C91 4273017 YP_746961.1 CDS Neut_0724 NC_008344.1 736377 738935 D PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: neu:NE1528 putative 3-hydroxyacyl-CoA dehydrogenase oxidoreductase protein; 3-hydroxybutyryl-CoA epimerase 736377..738935 Nitrosomonas eutropha C91 4273018 YP_746962.1 CDS Neut_0725 NC_008344.1 739000 740202 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 739000..740202 Nitrosomonas eutropha C91 4273019 YP_746963.1 CDS Neut_0726 NC_008344.1 740256 740594 R KEGG: neu:NE1526 hypothetical protein; hypothetical protein complement(740256..740594) Nitrosomonas eutropha C91 4273020 YP_746964.1 CDS Neut_0727 NC_008344.1 740643 740909 R KEGG: ecs:ECs5258 hypothetical protein; hypothetical protein complement(740643..740909) Nitrosomonas eutropha C91 4273021 YP_746965.1 CDS Neut_0728 NC_008344.1 741696 744095 D TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: neu:NE2408 DNA internalization-related competence protein ComEC/Rec2; DNA internalization-related competence protein ComEC/Rec2 741696..744095 Nitrosomonas eutropha C91 4273022 YP_746966.1 CDS Neut_0729 NC_008344.1 744292 744609 D with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems; transcriptional activator FlhD 744292..744609 Nitrosomonas eutropha C91 4273023 YP_746967.1 CDS Neut_0730 NC_008344.1 744636 745211 D With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems; transcriptional activator FlhC 744636..745211 Nitrosomonas eutropha C91 4273024 YP_746968.1 CDS Neut_0731 NC_008344.1 745489 747018 D TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: neu:NE2405 virulence factor MVIN-like; integral membrane protein MviN 745489..747018 Nitrosomonas eutropha C91 4273025 YP_746969.1 CDS Neut_0732 NC_008344.1 747746 748906 R PFAM: NlpBDapX family lipoprotein; KEGG: neu:NE2404 putative transmembrane protein; NlpB/DapX family lipoprotein complement(747746..748906) Nitrosomonas eutropha C91 4273026 YP_746970.1 CDS Neut_0733 NC_008344.1 748916 749794 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(748916..749794) Nitrosomonas eutropha C91 4273027 YP_746971.1 CDS Neut_0734 NC_008344.1 749885 752476 R PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: neu:NE2402 ClpB ATPase dependent protease, chaperonin; ATPase complement(749885..752476) Nitrosomonas eutropha C91 4273028 YP_746972.1 CDS Neut_0735 NC_008344.1 752958 754451 R PFAM: ferredoxin-dependent glutamate synthase; KEGG: neu:NE2123 ferredoxin-dependent glutamate synthase; ferredoxin-dependent glutamate synthase complement(752958..754451) Nitrosomonas eutropha C91 4273029 YP_746973.1 CDS Neut_0737 NC_008344.1 755327 755953 R PFAM: phosphoribosyltransferase; KEGG: nmu:Nmul_A0900 phosphoribosyltransferase; phosphoribosyltransferase complement(755327..755953) Nitrosomonas eutropha C91 4273031 YP_746974.1 CDS Neut_0738 NC_008344.1 756145 757644 D PFAM: membrane bound O-acyl transferase, MBOAT family protein; KEGG: neu:NE1054 putative alginate O-acetylation protein; membrane bound O-acyl transferase, MBOAT family protein 756145..757644 Nitrosomonas eutropha C91 4273032 YP_746975.1 CDS Neut_0740 NC_008344.1 759321 760595 R PFAM: flagellar hook-length control protein; KEGG: bxe:Bxe_A0161 putative flagellar hook-length control protein; flagellar hook-length control protein complement(759321..760595) Nitrosomonas eutropha C91 4272999 YP_746976.1 CDS Neut_0741 NC_008344.1 760653 761105 R TIGRFAM: flagellar export protein FliJ; PFAM: flagellar FliJ protein; KEGG: neu:NE2087 flagellar FliJ protein; flagellar export protein FliJ complement(760653..761105) Nitrosomonas eutropha C91 4273000 YP_746977.1 CDS Neut_0742 NC_008344.1 761122 762528 R KEGG: neu:NE2086 flagellar ATP synthase; TIGRFAM: ATPase, FliI/YscN family; flagellar protein export ATPase FliI; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; H+-transporting two-sector ATPase, alpha/beta subunit domain protein; SMART: AAA ATPase; flagellar protein export ATPase FliI complement(761122..762528) Nitrosomonas eutropha C91 4273001 YP_746978.1 CDS Neut_0743 NC_008344.1 762550 763269 R PFAM: flagellar assembly protein FliH; KEGG: neu:NE2085 flagellar assembly protein FliH; flagellar assembly protein FliH complement(762550..763269) Nitrosomonas eutropha C91 4273002 YP_746979.1 CDS Neut_0744 NC_008344.1 763461 764456 R PFAM: flagellar motor switch protein FliG; KEGG: neu:NE2084 flagellar motor switch protein FliG; flagellar motor switch protein FliG complement(763461..764456) Nitrosomonas eutropha C91 4273003 YP_746980.1 CDS Neut_0745 NC_008344.1 764446 766089 R TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring C-terminal domain protein; KEGG: neu:NE2083 flagellar M-ring transmembrane protein; flagellar M-ring protein FliF complement(764446..766089) Nitrosomonas eutropha C91 4273004 YP_746981.1 CDS Neut_0746 NC_008344.1 766320 767564 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: PAS domain containing protein; KEGG: neu:NE2082 putative two-component sensor; PAS/PAC sensor signal transduction histidine kinase 766320..767564 Nitrosomonas eutropha C91 4273005 YP_746982.1 CDS Neut_0747 NC_008344.1 767568 768881 D PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: neu:NE2081 sigma-54 dependent response regulator; Fis family two component sigma-54-specific transcriptional regulator 767568..768881 Nitrosomonas eutropha C91 4273006 YP_746983.1 CDS fliE NC_008344.1 768909 769238 D forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE 768909..769238 Nitrosomonas eutropha C91 4273007 YP_746984.1 CDS Neut_0749 NC_008344.1 769273 770082 D PFAM: type IV pilus assembly PilZ; YcgR family protein; KEGG: neu:NE2079 hypothetical protein; YcgR family protein 769273..770082 Nitrosomonas eutropha C91 4273008 YP_746985.1 CDS Neut_0750 NC_008344.1 770103 770444 R KEGG: neu:NE2078 possible similar to flagellar biosynthetic protein; flagellar biosynthetic protein-like protein complement(770103..770444) Nitrosomonas eutropha C91 4273009 YP_746986.1 CDS Neut_0751 NC_008344.1 770431 771456 R KEGG: neu:NE2077 hypothetical protein; hypothetical protein complement(770431..771456) Nitrosomonas eutropha C91 4273010 YP_746987.1 CDS Neut_0752 NC_008344.1 771811 772203 D KEGG: ret:RHE_PB00143 probable insertion sequence transposase protein; insertion sequence transposase protein 771811..772203 Nitrosomonas eutropha C91 4273011 YP_746988.1 CDS Neut_0753 NC_008344.1 772277 772750 D KEGG: nwi:Nwi_2921 ISRm2011-2 transposase protein; ISRm2011-2 transposase protein 772277..772750 Nitrosomonas eutropha C91 4273012 YP_746989.1 CDS Neut_0754 NC_008344.1 772798 773256 R PFAM: cytochrome c, class I; KEGG: neu:NE1493 cytochrome c, class IC:cytochrome c, class I; cytochrome c, class I complement(772798..773256) Nitrosomonas eutropha C91 4273013 YP_746990.1 CDS Neut_0755 NC_008344.1 773285 773809 R PFAM: protein of unknown function DUF411; KEGG: neu:NE1492 hypothetical protein; hypothetical protein complement(773285..773809) Nitrosomonas eutropha C91 4273014 YP_746991.1 CDS Neut_0756 NC_008344.1 774207 775148 D TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 774207..775148 Nitrosomonas eutropha C91 4273015 YP_746992.1 CDS Neut_0757 NC_008344.1 775175 776119 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(775175..776119) Nitrosomonas eutropha C91 4272981 YP_746993.1 CDS lipB NC_008344.1 776109 776786 R lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B complement(776109..776786) Nitrosomonas eutropha C91 4272982 YP_746994.1 CDS Neut_0759 NC_008344.1 776874 777137 R PFAM: protein of unknown function DUF493; KEGG: neu:NE1487 hypothetical protein; hypothetical protein complement(776874..777137) Nitrosomonas eutropha C91 4272983 YP_746995.1 CDS Neut_0760 NC_008344.1 777147 778007 R PFAM: aminotransferase, class IV; KEGG: neu:NE1486 aminotransferase class-IV; aminotransferase, class IV complement(777147..778007) Nitrosomonas eutropha C91 4272984 YP_746996.1 CDS Neut_0761 NC_008344.1 778027 779169 R PFAM: beta-lactamase; peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: neu:NE1485 D-alanyl-D-alanine carboxypeptidase 1 (S11) family; serine-type D-Ala-D-Ala carboxypeptidase complement(778027..779169) Nitrosomonas eutropha C91 4272985 YP_746997.1 CDS rplM NC_008344.1 779292 779726 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 779292..779726 Nitrosomonas eutropha C91 4272986 YP_746998.1 CDS rpsI NC_008344.1 779738 780130 D forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 779738..780130 Nitrosomonas eutropha C91 4272987 YP_746999.1 CDS argC NC_008344.1 780263 781291 D catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 780263..781291 Nitrosomonas eutropha C91 4272988 YP_747000.1 CDS Neut_0765 NC_008344.1 781392 782159 D KEGG: neu:NE1481 hypothetical protein; hypothetical protein 781392..782159 Nitrosomonas eutropha C91 4272989 YP_747001.1 CDS Neut_0766 NC_008344.1 782140 782565 D PFAM: protein of unknown function DUF583; KEGG: neu:NE1480 hypothetical protein; hypothetical protein 782140..782565 Nitrosomonas eutropha C91 4272990 YP_747002.1 CDS Neut_0767 NC_008344.1 782593 784254 R TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: neu:NE1479 ABC transporter:DNA repair protein RecN; DNA repair protein RecN complement(782593..784254) Nitrosomonas eutropha C91 4272991 YP_747003.1 CDS ppnK NC_008344.1 784264 785154 R catalyzes the phosphorylation of NAD to NADP; NAD(+)/NADH kinase family protein complement(784264..785154) Nitrosomonas eutropha C91 4272992 YP_747004.1 CDS hrcA NC_008344.1 785371 786387 D Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 785371..786387 Nitrosomonas eutropha C91 4272993 YP_747005.1 CDS hemH NC_008344.1 786407 787504 D protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 786407..787504 Nitrosomonas eutropha C91 4272994 YP_747006.1 CDS Neut_0771 NC_008344.1 787616 788407 D PFAM: peptidase M48, Ste24p; KEGG: neu:NE1475 hypothetical protein; peptidase M48, Ste24p 787616..788407 Nitrosomonas eutropha C91 4272995 YP_747007.1 CDS Neut_0772 NC_008344.1 788527 789399 D PFAM: phosphoribulokinase/uridine kinase; KEGG: neu:NE1474 phosphoribulokinase; phosphoribulokinase 788527..789399 Nitrosomonas eutropha C91 4272996 YP_747008.1 CDS Neut_0773 NC_008344.1 789463 791709 D PFAM: UvrD/REP helicase; KEGG: neu:NE1473 UvrD/REP helicase; UvrD/REP helicase 789463..791709 Nitrosomonas eutropha C91 4272997 YP_747009.1 CDS Neut_0774 NC_008344.1 791716 792507 R KEGG: neu:NE1472 possible transmembrane protein; transmembrane protein complement(791716..792507) Nitrosomonas eutropha C91 4272963 YP_747010.1 CDS Neut_0775 NC_008344.1 792598 793548 R catalyzes the formation of O-phospho-L-homoserine from L-homoserine; homoserine kinase complement(792598..793548) Nitrosomonas eutropha C91 4272964 YP_747011.1 CDS Neut_0776 NC_008344.1 793642 794022 R KEGG: neu:NE1470 hypothetical protein; hypothetical protein complement(793642..794022) Nitrosomonas eutropha C91 4272965 YP_747012.1 CDS Neut_0777 NC_008344.1 794083 794802 R PFAM: conserved hypothetical protein 730; KEGG: neu:NE1469 hypothetical protein; hypothetical protein complement(794083..794802) Nitrosomonas eutropha C91 4272966 YP_747013.1 CDS Neut_0778 NC_008344.1 794818 797538 D KEGG: neu:NE1468 DNA polymerase I protein; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2; DNA polymerase I 794818..797538 Nitrosomonas eutropha C91 4272967 YP_747014.1 CDS Neut_0779 NC_008344.1 797661 798848 D PFAM: fatty acid desaturase; KEGG: neu:NE1467 fatty acid desaturase, type 2:fatty acid desaturase, type 1; fatty acid desaturase 797661..798848 Nitrosomonas eutropha C91 4272968 YP_747015.1 CDS rpmG NC_008344.1 798930 799085 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 complement(798930..799085) Nitrosomonas eutropha C91 4272969 YP_747016.1 CDS rpmB NC_008344.1 799126 799362 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(799126..799362) Nitrosomonas eutropha C91 4272970 YP_747017.1 CDS radC NC_008344.1 799431 800105 R Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC complement(799431..800105) Nitrosomonas eutropha C91 4272971 YP_747018.1 CDS Neut_0783 NC_008344.1 800239 801444 D catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 800239..801444 Nitrosomonas eutropha C91 4272972 YP_747019.1 CDS dut NC_008344.1 801454 801903 D catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 801454..801903 Nitrosomonas eutropha C91 4272973 YP_747020.1 CDS Neut_0785 NC_008344.1 801897 802322 D PFAM: protein of unknown function DUF192; KEGG: neu:NE1461 DUF192; hypothetical protein 801897..802322 Nitrosomonas eutropha C91 4272974 YP_747021.1 CDS hppA NC_008344.1 802695 804752 R pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase complement(802695..804752) Nitrosomonas eutropha C91 4272975 YP_747022.1 CDS Neut_0787 NC_008344.1 804906 806165 R catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase complement(804906..806165) Nitrosomonas eutropha C91 4272976 YP_747023.1 CDS recA NC_008344.1 807264 808295 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 807264..808295 Nitrosomonas eutropha C91 4272978 YP_747024.1 CDS Neut_0790 NC_008344.1 808298 808738 D PFAM: regulatory protein RecX; KEGG: neu:NE1931 RecX regulatory protein; regulatory protein RecX 808298..808738 Nitrosomonas eutropha C91 4272979 YP_747025.1 CDS alaS NC_008344.1 808756 811347 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 808756..811347 Nitrosomonas eutropha C91 4272980 YP_747026.1 CDS Neut_0792 NC_008344.1 811386 812339 D TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: neu:NE1929 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; thioredoxin reductase 811386..812339 Nitrosomonas eutropha C91 4272946 YP_747027.1 CDS Neut_0793 NC_008344.1 812483 812941 D PFAM: Smr protein/MutS2; KEGG: neu:NE1928 Smr domain; Smr protein/MutS2 812483..812941 Nitrosomonas eutropha C91 4272947 YP_747028.1 CDS Neut_0794 NC_008344.1 813146 813292 D hypothetical protein 813146..813292 Nitrosomonas eutropha C91 4272948 YP_747029.1 CDS Neut_0796 NC_008344.1 813995 814204 R KEGG: neu:NE1923 response regulator receiver domain; response regulator receiver protein complement(813995..814204) Nitrosomonas eutropha C91 4272950 YP_747030.1 CDS Neut_0797 NC_008344.1 814343 814792 D KEGG: neu:NE1553 possible transposase; hypothetical protein 814343..814792 Nitrosomonas eutropha C91 4272951 YP_747031.1 CDS Neut_0799 NC_008344.1 815296 816990 D PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I); KEGG: nha:Nham_4321 NADH/ubiquinone/plastoquinone (complex I); NADH dehydrogenase (quinone) 815296..816990 Nitrosomonas eutropha C91 4272953 YP_747032.1 CDS Neut_0800 NC_008344.1 816994 817794 D KEGG: tbd:Tbd_2654 hypothetical protein; hypothetical protein 816994..817794 Nitrosomonas eutropha C91 4272954 YP_747033.1 CDS Neut_0801 NC_008344.1 817779 820907 D KEGG: nha:Nham_4323 hypothetical protein; hypothetical protein 817779..820907 Nitrosomonas eutropha C91 4272955 YP_747034.1 CDS Neut_0802 NC_008344.1 820904 821230 D KEGG: nha:Nham_4043 nitrogen regulatory protein P-II (GlnB, GlnK); nitrogen regulatory protein P-II 820904..821230 Nitrosomonas eutropha C91 4272956 YP_747035.1 CDS Neut_0803 NC_008344.1 821232 822152 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: nha:Nham_4331 transcriptional regulatory protein, LysR family; LysR family transcriptional regulator complement(821232..822152) Nitrosomonas eutropha C91 4272957 YP_747036.1 CDS rbcL NC_008344.1 822352 823773 D type III RuBisCO; involved in carbon fixation; ribulose bisophosphate carboxylase 822352..823773 Nitrosomonas eutropha C91 4272958 YP_747037.1 CDS Neut_0805 NC_008344.1 823858 824184 D PFAM: ribulose bisphosphate carboxylase, small chain; KEGG: nha:Nham_4333 ribulose bisphosphate carboxylase, small chain; ribulose-bisphosphate carboxylase 823858..824184 Nitrosomonas eutropha C91 4272959 YP_747038.1 CDS Neut_0806 NC_008344.1 824286 826985 D KEGG: nha:Nham_4334 carboxysome shell protein CsoS2; carboxysome shell protein 824286..826985 Nitrosomonas eutropha C91 4272960 YP_747039.1 CDS Neut_0807 NC_008344.1 826996 828525 D KEGG: nwi:Nwi_1984 carboxysome shell polypeptide, CsoS3; carboxysome shell polypeptide 826996..828525 Nitrosomonas eutropha C91 4272961 YP_747040.1 CDS Neut_0808 NC_008344.1 828546 828803 D PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: nha:Nham_4336 ethanolamine utilization protein EutN/carboxysome structural protein CcmL; ethanolamine utilization protein EutN/carboxysome structural protein Ccml 828546..828803 Nitrosomonas eutropha C91 4272962 YP_747041.1 CDS Neut_0809 NC_008344.1 828803 829051 D PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: nha:Nham_4337 microcompartments protein; ethanolamine utilization protein EutN/carboxysome structural protein Ccml 828803..829051 Nitrosomonas eutropha C91 4272912 YP_747042.1 CDS Neut_0810 NC_008344.1 829160 829456 D PFAM: microcompartments protein; KEGG: nwi:Nwi_1981 carboxysome structural polypeptide; microcompartments protein 829160..829456 Nitrosomonas eutropha C91 4272913 YP_747043.1 CDS Neut_0811 NC_008344.1 829498 829845 D PFAM: microcompartments protein; KEGG: nha:Nham_4339 carboxysome structural peptide CsoS1B; microcompartments protein 829498..829845 Nitrosomonas eutropha C91 4272914 YP_747044.1 CDS Neut_0812 NC_008344.1 829866 830288 D PFAM: Ferritin, Dps family protein; KEGG: tbd:Tbd_2643 bacterioferritin; Ferritin, Dps family protein 829866..830288 Nitrosomonas eutropha C91 4272915 YP_747045.1 CDS Neut_0813 NC_008344.1 830285 830563 D KEGG: nha:Nham_4341 hypothetical protein; hypothetical protein 830285..830563 Nitrosomonas eutropha C91 4272916 YP_747046.1 CDS Neut_0814 NC_008344.1 830575 831204 D ParA family protein 830575..831204 Nitrosomonas eutropha C91 4272917 YP_747047.1 CDS Neut_0815 NC_008344.1 831516 832352 D PFAM: ATPase associated with various cellular activities, AAA_5; CbbQ/NirQ/NorQ C-terminal domain protein; KEGG: nha:Nham_4344 ATPase associated with various cellular activities, AAA_5; CbbQ/NirQ/NorQ C-terminal domain-containing protein 831516..832352 Nitrosomonas eutropha C91 4272918 YP_747048.1 CDS Neut_0816 NC_008344.1 832375 834735 D PFAM: von Willebrand factor, type A; KEGG: nwi:Nwi_1975 nitric oxide reductase activation protein; von Willebrand factor, type A 832375..834735 Nitrosomonas eutropha C91 4272919 YP_747049.1 CDS Neut_0817 NC_008344.1 834748 835380 D PFAM: microcompartments protein; KEGG: nwi:Nwi_1974 hypothetical protein; microcompartments protein 834748..835380 Nitrosomonas eutropha C91 4272920 YP_747050.1 CDS Neut_0818 NC_008344.1 835425 836249 D KEGG: nha:Nham_4347 hypothetical protein; hypothetical protein 835425..836249 Nitrosomonas eutropha C91 4272921 YP_747051.1 CDS Neut_0821 NC_008344.1 838070 838372 D KEGG: neu:NE1917 hypothetical protein; hypothetical protein 838070..838372 Nitrosomonas eutropha C91 4272924 YP_747052.1 CDS Neut_0823 NC_008344.1 840130 840549 R KEGG: neu:NE1916 hypothetical protein; hypothetical protein complement(840130..840549) Nitrosomonas eutropha C91 4272926 YP_747053.1 CDS Neut_0824 NC_008344.1 840668 840913 D hypothetical protein 840668..840913 Nitrosomonas eutropha C91 4272927 YP_747054.1 CDS Neut_0825 NC_008344.1 841237 842205 R PFAM: Polyprenyl synthetase; KEGG: neu:NE1915 polyprenyl synthetase; farnesyltranstransferase complement(841237..842205) Nitrosomonas eutropha C91 4272895 YP_747055.1 CDS hemA NC_008344.1 842389 843642 D catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 842389..843642 Nitrosomonas eutropha C91 4272896 YP_747056.1 CDS prfA NC_008344.1 843639 844718 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 843639..844718 Nitrosomonas eutropha C91 4272897 YP_747057.1 CDS Neut_0828 NC_008344.1 844715 845596 D TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; ribosomal L11 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: neu:NE1912 hemK_fam: modification methylase; HemK family modification methylase 844715..845596 Nitrosomonas eutropha C91 4272898 YP_747058.1 CDS Neut_0829 NC_008344.1 845751 846059 D TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: neu:NE1911 glutaredoxin-related protein; glutaredoxin-like protein 845751..846059 Nitrosomonas eutropha C91 4272899 YP_747059.1 CDS Neut_0830 NC_008344.1 846080 846499 R KEGG: neu:NE1910 putative inner membrane protein; inner membrane protein complement(846080..846499) Nitrosomonas eutropha C91 4272900 YP_747060.1 CDS Neut_0831 NC_008344.1 846949 847581 D PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: neu:NE1908 possible glutathione S-transferase family protein; glutathione S-transferase domain-containing protein 846949..847581 Nitrosomonas eutropha C91 4272901 YP_747061.1 CDS Neut_0832 NC_008344.1 847853 848137 D KEGG: neu:NE1907 hypothetical protein; hypothetical protein 847853..848137 Nitrosomonas eutropha C91 4272902 YP_747062.1 CDS Neut_0833 NC_008344.1 848630 849157 D hypothetical protein 848630..849157 Nitrosomonas eutropha C91 4272903 YP_747063.1 CDS Neut_0834 NC_008344.1 849242 850357 R KEGG: neu:NE1566 hypothetical protein; hypothetical protein complement(849242..850357) Nitrosomonas eutropha C91 4272904 YP_747064.1 CDS Neut_0835 NC_008344.1 850342 851700 R KEGG: neu:NE1565 hypothetical protein; hypothetical protein complement(850342..851700) Nitrosomonas eutropha C91 4272905 YP_747065.1 CDS Neut_0836 NC_008344.1 852339 853544 R KEGG: neu:NE2399 DnaJ N-terminal domain; DnaJ N-terminal domain-containing protein complement(852339..853544) Nitrosomonas eutropha C91 4272906 YP_747066.1 CDS Neut_0837 NC_008344.1 853913 855094 R PFAM: aminotransferase, class I and II; KEGG: neu:NE2400 aminotransferases class-I; class I and II aminotransferase complement(853913..855094) Nitrosomonas eutropha C91 4272907 YP_747067.1 CDS Neut_0838 NC_008344.1 855091 857208 R PFAM: protein of unknown function DUF323; Methyltransferase type 11; Methyltransferase type 12; KEGG: neu:NE2401 generic methyltransferase; hypothetical protein complement(855091..857208) Nitrosomonas eutropha C91 4272908 YP_747068.1 CDS Neut_0840 NC_008344.1 857989 858612 R TIGRFAM: PEP motif putative anchor-like; PEP motif-containing protein complement(857989..858612) Nitrosomonas eutropha C91 4272910 YP_747069.1 CDS Neut_0841 NC_008344.1 859102 861222 R PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: neu:NE1574 serine protease, subtilase family; peptidase S8/S53 subtilisin kexin sedolisin complement(859102..861222) Nitrosomonas eutropha C91 4272911 YP_747070.1 CDS apaG NC_008344.1 861610 861993 D protein associated with Co2+ and Mg2+ efflux; ApaG protein 861610..861993 Nitrosomonas eutropha C91 4272877 YP_747071.1 CDS Neut_0843 NC_008344.1 862006 862740 D PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: neu:NE1572 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; uroporphyrin-III C/tetrapyrrole methyltransferase 862006..862740 Nitrosomonas eutropha C91 4272878 YP_747072.1 CDS Neut_0844 NC_008344.1 862825 864045 R PFAM: sodium:dicarboxylate symporter; KEGG: neu:NE2141 sodium:dicarboxylate symporter family; sodium:dicarboxylate symporter complement(862825..864045) Nitrosomonas eutropha C91 4272879 YP_747073.1 CDS Neut_0845 NC_008344.1 864359 864904 R PFAM: Redoxin domain protein; KEGG: neu:NE2390 thioredoxin; redoxin domain-containing protein complement(864359..864904) Nitrosomonas eutropha C91 4272880 YP_747074.1 CDS Neut_0846 NC_008344.1 865060 867003 R PFAM: cytochrome c biogenesis protein, transmembrane region; Thioredoxin domain; KEGG: neu:NE2389 thioredoxin:cytochrome c biogenesis protein transmembrane region; protein-disulfide reductase complement(865060..867003) Nitrosomonas eutropha C91 4272881 YP_747075.1 CDS Neut_0847 NC_008344.1 867016 867387 R PFAM: CutA1 divalent ion tolerance protein; KEGG: neu:NE2388 CutA1 divalent ion tolerance protein; CutA1 divalent ion tolerance protein complement(867016..867387) Nitrosomonas eutropha C91 4272882 YP_747076.1 CDS Neut_0848 NC_008344.1 867474 867668 D KEGG: neu:NE2387 hypothetical protein; hypothetical protein 867474..867668 Nitrosomonas eutropha C91 4272883 YP_747077.1 CDS Neut_0849 NC_008344.1 867771 868454 D PFAM: SH3, type 3 domain protein; SMART: SH3 domain protein domain protein; KEGG: neu:NE2386 bacterial SH3 domain homologue; SH3 type 3 domain-containing protein 867771..868454 Nitrosomonas eutropha C91 4272884 YP_747078.1 CDS Neut_0850 NC_008344.1 868492 869367 R PFAM: nuclease (SNase domain protein); KEGG: neu:NE2385 Staphylococcus nuclease (SNase) homologues; nuclease complement(868492..869367) Nitrosomonas eutropha C91 4272885 YP_747079.1 CDS Neut_0851 NC_008344.1 869493 870308 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: neu:NE2384 ATPase component Uncharacterized ABC-type transport system; ABC transporter-like protein 869493..870308 Nitrosomonas eutropha C91 4272886 YP_747080.1 CDS Neut_0852 NC_008344.1 870346 871143 D PFAM: protein of unknown function DUF140; KEGG: neu:NE2383 domain of unknown function DUF140; hypothetical protein 870346..871143 Nitrosomonas eutropha C91 4272887 YP_747081.1 CDS Neut_0853 NC_008344.1 871143 871622 D PFAM: Mammalian cell entry related domain protein; KEGG: neu:NE2382 mce related protein; hypothetical protein 871143..871622 Nitrosomonas eutropha C91 4272888 YP_747082.1 CDS Neut_0854 NC_008344.1 871638 872255 D PFAM: toluene tolerance family protein; KEGG: neu:NE2381 putative signal peptide protein; toluene tolerance family protein 871638..872255 Nitrosomonas eutropha C91 4272889 YP_747083.1 CDS Neut_0855 NC_008344.1 872262 872576 D PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: neu:NE2380 STAS domain; anti-sigma-factor antagonist 872262..872576 Nitrosomonas eutropha C91 4272890 YP_747084.1 CDS Neut_0856 NC_008344.1 872638 873552 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: neu:NE2379 ATPase component ABC-type multidrug transport system; ABC transporter-like protein 872638..873552 Nitrosomonas eutropha C91 4272891 YP_747085.1 CDS Neut_0857 NC_008344.1 873549 874304 D PFAM: ABC-2 type transporter; KEGG: neu:NE2378 ABC 2 transport system integral membrane protein; ABC transporter 873549..874304 Nitrosomonas eutropha C91 4272892 YP_747086.1 CDS Neut_0858 NC_008344.1 874349 874603 D PFAM: BolA family protein; KEGG: neu:NE2377 BolA-like protein; BolA family protein 874349..874603 Nitrosomonas eutropha C91 4272893 YP_747087.1 CDS Neut_0859 NC_008344.1 874659 875951 R TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: neu:NE2375 dihydrolipoamide succinyltransferase (component of 2-oxoglutarate dehydrogenase complex) protein; 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase complement(874659..875951) Nitrosomonas eutropha C91 4272894 YP_747088.1 CDS sucA NC_008344.1 875973 878831 R SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component complement(875973..878831) Nitrosomonas eutropha C91 4272860 YP_747089.1 CDS Neut_0861 NC_008344.1 878993 880276 R KEGG: neu:NE2373 citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; citrate synthase I complement(878993..880276) Nitrosomonas eutropha C91 4272861 YP_747090.1 CDS Neut_0862 NC_008344.1 880334 880567 R PFAM: protein of unknown function DUF339; KEGG: neu:NE2372 hypothetical protein; hypothetical protein complement(880334..880567) Nitrosomonas eutropha C91 4272862 YP_747091.1 CDS sdhB NC_008344.1 880564 881259 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit complement(880564..881259) Nitrosomonas eutropha C91 4272863 YP_747092.1 CDS Neut_0864 NC_008344.1 881388 882818 R catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase complement(881388..882818) Nitrosomonas eutropha C91 4272864 YP_747093.1 CDS Neut_0865 NC_008344.1 882943 884259 R catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase complement(882943..884259) Nitrosomonas eutropha C91 4272865 YP_747094.1 CDS Neut_0866 NC_008344.1 884366 885592 R broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT complement(884366..885592) Nitrosomonas eutropha C91 4272866 YP_747095.1 CDS Neut_0867 NC_008344.1 885884 886267 D PFAM: protein of unknown function DUF498; KEGG: neu:NE2367 hypothetical protein; hypothetical protein 885884..886267 Nitrosomonas eutropha C91 4272867 YP_747096.1 CDS Neut_0868 NC_008344.1 886409 888739 D catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 886409..888739 Nitrosomonas eutropha C91 4272868 YP_747097.1 CDS Neut_0869 NC_008344.1 888744 889571 D PFAM: protein of unknown function DUF299; KEGG: neu:NE2365 hypothetical protein; hypothetical protein 888744..889571 Nitrosomonas eutropha C91 4272869 YP_747098.1 CDS Neut_0870 NC_008344.1 889613 890131 R PFAM: NLP/P60 protein; KEGG: neu:NE2364 NLP/P60; NLP/P60 protein complement(889613..890131) Nitrosomonas eutropha C91 4272870 YP_747099.1 CDS Neut_0871 NC_008344.1 890266 891963 R catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase complement(890266..891963) Nitrosomonas eutropha C91 4272871 YP_747100.1 CDS lysS NC_008344.1 892152 893750 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 892152..893750 Nitrosomonas eutropha C91 4272872 YP_747101.1 CDS Neut_0873 NC_008344.1 893852 894508 D KEGG: neu:NE2354 hypothetical protein; hypothetical protein 893852..894508 Nitrosomonas eutropha C91 4272873 YP_747102.1 CDS Neut_0875 NC_008344.1 895702 896229 D KEGG: noc:Noc_1574 hypothetical protein; hypothetical protein 895702..896229 Nitrosomonas eutropha C91 4272875 YP_747103.1 CDS Neut_0876 NC_008344.1 896691 897314 R PFAM: NADPH-dependent FMN reductase; flavodoxin/nitric oxide synthase; KEGG: bld:BLi02026 putative Trp repressor binding protein; flavodoxin/nitric oxide synthase complement(896691..897314) Nitrosomonas eutropha C91 4272876 YP_747104.1 CDS Neut_0878 NC_008344.1 898205 899035 R KEGG: beta-glucosidase; beta-glucosidase complement(898205..899035) Nitrosomonas eutropha C91 4272843 YP_747105.1 CDS Neut_0879 NC_008344.1 899038 900012 R KEGG: aba:Acid345_4061 beta-glucosidase; beta-glucosidase complement(899038..900012) Nitrosomonas eutropha C91 4272844 YP_747106.1 CDS Neut_0880 NC_008344.1 900338 901510 R PFAM: protein of unknown function UPF0027; KEGG: noc:Noc_2009 hypothetical protein; hypothetical protein complement(900338..901510) Nitrosomonas eutropha C91 4272845 YP_747107.1 CDS Neut_0881 NC_008344.1 901591 902337 R PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: mst:Msp_0714 predicted short chain dehydrogenase; short-chain dehydrogenase/reductase SDR complement(901591..902337) Nitrosomonas eutropha C91 4272846 YP_747108.1 CDS Neut_0882 NC_008344.1 902450 902857 R KEGG: noc:Noc_2010 C4-type zinc finger protein, DksA/TraR family; transcriptional regulators, TraR/DksA family protein complement(902450..902857) Nitrosomonas eutropha C91 4272847 YP_747109.1 CDS Neut_0883 NC_008344.1 903063 903539 R PFAM: transposase, IS4 family protein; KEGG: eba:p2A101 putative transposase, fragment; transposase, IS4 family protein complement(903063..903539) Nitrosomonas eutropha C91 4272848 YP_747110.1 CDS Neut_0884 NC_008344.1 903481 903855 R KEGG: xoo:XOO3880 putative transposase; transposase complement(903481..903855) Nitrosomonas eutropha C91 4272849 YP_747111.1 CDS Neut_0885 NC_008344.1 903912 904235 D PFAM: transposase IS3/IS911 family protein; KEGG: mca:MCA1895 ISMca3, transposase, OrfA; transposase IS3/IS911 family protein 903912..904235 Nitrosomonas eutropha C91 4272850 YP_747112.1 CDS Neut_0886 NC_008344.1 904453 904749 D PFAM: transposase IS3/IS911 family protein; KEGG: lpf:lpl1584 hypothetical protein; transposase IS3/IS911 family protein 904453..904749 Nitrosomonas eutropha C91 4272851 YP_747113.1 CDS Neut_0887 NC_008344.1 904797 905624 D PFAM: Integrase, catalytic region; KEGG: lpf:lpl1576 hypothetical protein; integrase catalytic subunit 904797..905624 Nitrosomonas eutropha C91 4272852 YP_747114.1 CDS Neut_0889 NC_008344.1 906461 907828 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: neu:NE1807 putative ATP-dependent RNA helicase protein; DEAD/DEAH box helicase complement(906461..907828) Nitrosomonas eutropha C91 4272854 YP_747115.1 CDS Neut_0890 NC_008344.1 908094 909761 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; ABC transporter ATP-binding protein complement(908094..909761) Nitrosomonas eutropha C91 4272855 YP_747116.1 CDS Neut_0891 NC_008344.1 910626 911243 D PFAM: polysaccharide export protein; KEGG: neu:NE1805 putative polysaccharide export protein, outer membrane; polysaccharide export protein 910626..911243 Nitrosomonas eutropha C91 4272856 YP_747117.1 CDS Neut_0892 NC_008344.1 911286 912830 D PFAM: lipopolysaccharide biosynthesis; KEGG: neu:NE1804 chain length determinant protein; lipopolysaccharide biosynthesis protein 911286..912830 Nitrosomonas eutropha C91 4272857 YP_747118.1 CDS Neut_0893 NC_008344.1 912917 913849 D KEGG: neu:NE1803 possible similar to capsular polysaccharide biosynthesis; capsular polysaccharide biosynthetic protein-like protein 912917..913849 Nitrosomonas eutropha C91 4272858 YP_747119.1 CDS Neut_0894 NC_008344.1 913849 915429 D KEGG: neu:NE1802 hypothetical protein; hypothetical protein 913849..915429 Nitrosomonas eutropha C91 4272859 YP_747120.1 CDS Neut_0895 NC_008344.1 915443 916276 D SMART: AAA ATPase; KEGG: neu:NE1801 ATP/GTP-binding site motif A (P-loop):AAA ATPase superfamily; ATPase AAA 915443..916276 Nitrosomonas eutropha C91 4272825 YP_747121.1 CDS Neut_0896 NC_008344.1 916282 917121 D PFAM: polysaccharide deacetylase; KEGG: neu:NE1800 polysaccharide deacetylase; polysaccharide deacetylase 916282..917121 Nitrosomonas eutropha C91 4272826 YP_747122.1 CDS Neut_0897 NC_008344.1 917118 918197 D KEGG: neu:NE1799 hypothetical protein; hypothetical protein 917118..918197 Nitrosomonas eutropha C91 4272827 YP_747123.1 CDS Neut_0898 NC_008344.1 918203 919414 D PFAM: glycosyl transferase, group 1; KEGG: neu:NE1798 glycosyl transferase group 1; group 1 glycosyl transferase 918203..919414 Nitrosomonas eutropha C91 4272828 YP_747124.1 CDS Neut_0899 NC_008344.1 919495 921063 D TIGRFAM: eight transmembrane protein EpsH; KEGG: neu:NE1797 hypothetical protein; transmembrane protein EpsH 919495..921063 Nitrosomonas eutropha C91 4272829 YP_747125.1 CDS Neut_0900 NC_008344.1 921069 922241 D PFAM: glycosyl transferase, group 1; KEGG: neu:NE1796 glycosyl transferase group 1; group 1 glycosyl transferase 921069..922241 Nitrosomonas eutropha C91 4272830 YP_747126.1 CDS Neut_0901 NC_008344.1 922283 924217 D KEGG: neu:NE1795 glutamine amidotransferase class-II:asparagine synthase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II; asparagine synthase; asparagine synthase 922283..924217 Nitrosomonas eutropha C91 4272831 YP_747127.1 CDS Neut_0902 NC_008344.1 924253 925260 D KEGG: neu:NE1794 hypothetical protein; hypothetical protein 924253..925260 Nitrosomonas eutropha C91 4272832 YP_747128.1 CDS Neut_0903 NC_008344.1 925260 926198 D KEGG: neu:NE1793 hypothetical protein; hypothetical protein 925260..926198 Nitrosomonas eutropha C91 4272833 YP_747129.1 CDS Neut_0904 NC_008344.1 926264 927337 D PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: neu:NE1792 hypothetical protein; hypothetical protein 926264..927337 Nitrosomonas eutropha C91 4272834 YP_747130.1 CDS Neut_0905 NC_008344.1 927490 928437 D KEGG: neu:NE1791 hypothetical protein; hypothetical protein 927490..928437 Nitrosomonas eutropha C91 4272835 YP_747131.1 CDS Neut_0906 NC_008344.1 928454 929575 R KEGG: neu:NE1790 hypothetical protein; hypothetical protein complement(928454..929575) Nitrosomonas eutropha C91 4272836 YP_747132.1 CDS Neut_0907 NC_008344.1 929645 931537 D PFAM: peptidyl-tRNA hydrolase; Mur ligase, middle domain protein; KEGG: pca:Pcar_0169 UDP-N-acetylmuramyl pentapeptide synthase-like; peptidyl-tRNA hydrolase 929645..931537 Nitrosomonas eutropha C91 4272837 YP_747133.1 CDS Neut_0908 NC_008344.1 931604 933457 D PFAM: peptidyl-tRNA hydrolase; Mur ligase, middle domain protein; KEGG: pca:Pcar_0169 UDP-N-acetylmuramyl pentapeptide synthase-like; peptidyl-tRNA hydrolase 931604..933457 Nitrosomonas eutropha C91 4272838 YP_747134.1 CDS Neut_0909 NC_008344.1 933531 934967 R PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: nmu:Nmul_A0292 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein complement(933531..934967) Nitrosomonas eutropha C91 4272839 YP_747135.1 CDS Neut_0910 NC_008344.1 935124 936893 R PFAM: asparagine synthase; KEGG: par:Psyc_0665 probable asparagine synthase, glutamine-hydrolyzing; asparagine synthase complement(935124..936893) Nitrosomonas eutropha C91 4272840 YP_747136.1 CDS Neut_0911 NC_008344.1 937387 938196 D hypothetical protein 937387..938196 Nitrosomonas eutropha C91 4272841 YP_747137.1 CDS Neut_0912 NC_008344.1 938212 939480 D PFAM: O-antigen polymerase; KEGG: neu:NE2016 hypothetical protein; O-antigen polymerase 938212..939480 Nitrosomonas eutropha C91 4272790 YP_747138.1 CDS Neut_0913 NC_008344.1 939483 940382 R KEGG: rru:Rru_A3061 hypothetical protein; hypothetical protein complement(939483..940382) Nitrosomonas eutropha C91 4272791 YP_747139.1 CDS Neut_0914 NC_008344.1 940430 940933 R PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: neu:NE1785 low molecular weight phosphotyrosine protein phosphatase; protein tyrosine phosphatase complement(940430..940933) Nitrosomonas eutropha C91 4272792 YP_747140.1 CDS Neut_0915 NC_008344.1 941058 942803 D KEGG: neu:NE1784 ABC transporter, fused permease and ATPase domains; TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid ABC transporter ATPase/inner membrane protein 941058..942803 Nitrosomonas eutropha C91 4272793 YP_747141.1 CDS Neut_0916 NC_008344.1 942824 943585 R PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: neu:NE1783 NAD binding site:UBA/THIF-type NAD/FAD binding fold; UBA/THIF-type NAD/FAD binding protein complement(942824..943585) Nitrosomonas eutropha C91 4272794 YP_747142.1 CDS Neut_0917 NC_008344.1 943614 945044 R KEGG: neu:NE1782 carboxy-terminal processing protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease complement(943614..945044) Nitrosomonas eutropha C91 4272795 YP_747143.1 CDS Neut_0918 NC_008344.1 945126 946406 R PFAM: peptidase M23B; KEGG: neu:NE1781 peptidase family M23/M37; peptidase M23B complement(945126..946406) Nitrosomonas eutropha C91 4272796 YP_747144.1 CDS gpmA NC_008344.1 946406 947155 R 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase complement(946406..947155) Nitrosomonas eutropha C91 4272797 YP_747145.1 CDS tpiA NC_008344.1 947356 948114 D Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 947356..948114 Nitrosomonas eutropha C91 4272798 YP_747146.1 CDS secG NC_008344.1 948133 948498 D TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: neu:NE1778 preprotein translocase SecG subunit; preprotein translocase subunit SecG 948133..948498 Nitrosomonas eutropha C91 4272799 YP_747147.1 CDS Neut_0922 NC_008344.1 948717 949073 D PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; KEGG: neu:NE1777 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 948717..949073 Nitrosomonas eutropha C91 4272801 YP_747148.1 CDS Neut_0923 NC_008344.1 949077 949553 D The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 949077..949553 Nitrosomonas eutropha C91 4272802 YP_747149.1 CDS Neut_0924 NC_008344.1 949563 950183 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit C 949563..950183 Nitrosomonas eutropha C91 4272803 YP_747150.1 CDS Neut_0925 NC_008344.1 950241 951494 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D 950241..951494 Nitrosomonas eutropha C91 4272804 YP_747151.1 CDS Neut_0926 NC_008344.1 951491 951979 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E 951491..951979 Nitrosomonas eutropha C91 4272805 YP_747152.1 CDS Neut_0927 NC_008344.1 951976 953253 D KEGG: neu:NE1772 respiratory-chain NADH dehydrogenase 51 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; NADH-quinone oxidoreductase subunit F 951976..953253 Nitrosomonas eutropha C91 4272806 YP_747153.1 CDS Neut_0928 NC_008344.1 953315 955720 D Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit G 953315..955720 Nitrosomonas eutropha C91 4271831 YP_747154.1 CDS Neut_0929 NC_008344.1 955745 956842 D PFAM: respiratory-chain NADH dehydrogenase, subunit 1; KEGG: neu:NE1770 respiratory-chain NADH dehydrogenase subunit 1; respiratory-chain NADH dehydrogenase subunit 1 955745..956842 Nitrosomonas eutropha C91 4271832 YP_747155.1 CDS Neut_0930 NC_008344.1 956860 957348 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 956860..957348 Nitrosomonas eutropha C91 4271833 YP_747156.1 CDS Neut_0931 NC_008344.1 957367 957972 D PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; KEGG: neu:NE1768 NADH-ubiquinone/plastoquinone oxidoreductase chain 6; NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 957367..957972 Nitrosomonas eutropha C91 4271834 YP_747157.1 CDS Neut_0932 NC_008344.1 958028 958333 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K 958028..958333 Nitrosomonas eutropha C91 4271835 YP_747158.1 CDS Neut_0933 NC_008344.1 958394 960340 D KEGG: neu:NE1766 probable transmembrane NADH dehydrogenase I (chain L) oxidoreductase protein; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit L 958394..960340 Nitrosomonas eutropha C91 4271836 YP_747159.1 CDS Neut_0934 NC_008344.1 960429 961910 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M 960429..961910 Nitrosomonas eutropha C91 4271837 YP_747160.1 CDS Neut_0935 NC_008344.1 961973 963418 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N 961973..963418 Nitrosomonas eutropha C91 4271838 YP_747161.1 CDS Neut_0936 NC_008344.1 963440 964540 R KEGG: neu:NE1763 putative membrane-bound dehydrogenase oxidoreductase protein; membrane-bound dehydrogenase oxidoreductase protein complement(963440..964540) Nitrosomonas eutropha C91 4271839 YP_747162.1 CDS Neut_0937 NC_008344.1 964647 966569 D molecular chaperone; heat shock protein 90 964647..966569 Nitrosomonas eutropha C91 4271840 YP_747163.1 CDS Neut_0938 NC_008344.1 966906 967946 D PFAM: WD40 domain protein beta Propeller; KEGG: neu:NE1761 hypothetical protein; WD40 domain-containing protein 966906..967946 Nitrosomonas eutropha C91 4271841 YP_747164.1 CDS Neut_0939 NC_008344.1 968204 968626 D PFAM: transposase, IS4 family protein; KEGG: neu:NE1552 transposase IS4 family; transposase, IS4 family protein 968204..968626 Nitrosomonas eutropha C91 4271842 YP_747165.1 CDS Neut_0940 NC_008344.1 968840 971482 D KEGG: neu:NE1759 hypothetical protein; hypothetical protein 968840..971482 Nitrosomonas eutropha C91 4271843 YP_747166.1 CDS Neut_0941 NC_008344.1 971518 972168 R KEGG: neu:NE1758 DedA family; DedA family protein complement(971518..972168) Nitrosomonas eutropha C91 4271844 YP_747167.1 CDS Neut_0942 NC_008344.1 972459 974690 R KEGG: tbd:Tbd_0208 hypothetical protein; hypothetical protein complement(972459..974690) Nitrosomonas eutropha C91 4271846 YP_747168.1 CDS Neut_0943 NC_008344.1 974969 975382 D PFAM: conserved hypothetical protein 701; KEGG: neu:NE1756 hypothetical protein; hypothetical protein 974969..975382 Nitrosomonas eutropha C91 4272414 YP_747169.1 CDS def NC_008344.1 975404 975934 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(975404..975934) Nitrosomonas eutropha C91 4272415 YP_747170.1 CDS Neut_0945 NC_008344.1 975927 976673 R Catalyzes the phosphorolytic cleavage of 6-oxopurine nucleosides; 5'-methylthioadenosine phosphorylase complement(975927..976673) Nitrosomonas eutropha C91 4272416 YP_747171.1 CDS Neut_0946 NC_008344.1 976793 978940 R KEGG: neu:NE1753 NAD-dependent DNA ligase; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; NAD-dependent DNA ligase; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; SMART: Helix-hairpin-helix DNA-binding, class 1; NAD-dependent DNA ligase complement(976793..978940) Nitrosomonas eutropha C91 4272417 YP_747172.1 CDS Neut_0947 NC_008344.1 979003 979692 D PFAM: protein of unknown function, Spy-related; KEGG: neu:NE1752 hypothetical protein; hypothetical protein 979003..979692 Nitrosomonas eutropha C91 4272418 YP_747173.1 CDS Neut_0948 NC_008344.1 980059 980430 R KEGG: neu:NE1597 flagellar protein FliT; flagellar protein FliT complement(980059..980430) Nitrosomonas eutropha C91 4272419 YP_747174.1 CDS Neut_0949 NC_008344.1 980427 980897 R PFAM: flagellar protein FliS; KEGG: neu:NE1596 flagellar protein FliS; flagellar protein FliS complement(980427..980897) Nitrosomonas eutropha C91 4272420 YP_747175.1 CDS Neut_0950 NC_008344.1 980955 982397 R PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: neu:NE1595 flagellar hook-associated protein 2; flagellar hook-associated 2 domain-containing protein complement(980955..982397) Nitrosomonas eutropha C91 4272421 YP_747176.1 CDS Neut_0951 NC_008344.1 982754 983224 R KEGG: neu:NE1301 hypothetical protein; hypothetical protein complement(982754..983224) Nitrosomonas eutropha C91 4272422 YP_747177.1 CDS Neut_0952 NC_008344.1 983654 983929 D KEGG: neu:NE1300 hypothetical protein; hypothetical protein 983654..983929 Nitrosomonas eutropha C91 4272423 YP_747178.1 CDS Neut_0953 NC_008344.1 983993 984943 R catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase complement(983993..984943) Nitrosomonas eutropha C91 4272424 YP_747179.1 CDS Neut_0954 NC_008344.1 984940 986250 R TIGRFAM: glutamate--cysteine ligase; KEGG: neu:NE1294 putative glutamate--cysteine ligase; glutamate--cysteine ligase complement(984940..986250) Nitrosomonas eutropha C91 4272425 YP_747180.1 CDS rplU NC_008344.1 986449 986760 D PFAM: ribosomal protein L21; KEGG: neu:NE1293 ribosomal protein L21; 50S ribosomal protein L21 986449..986760 Nitrosomonas eutropha C91 4272426 YP_747181.1 CDS rpmA NC_008344.1 986773 987030 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 986773..987030 Nitrosomonas eutropha C91 4272427 YP_747182.1 CDS obgE NC_008344.1 987165 988196 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 987165..988196 Nitrosomonas eutropha C91 4272428 YP_747183.1 CDS Neut_0958 NC_008344.1 988202 989323 D catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 988202..989323 Nitrosomonas eutropha C91 4272429 YP_747184.1 CDS Neut_0959 NC_008344.1 989374 990375 D PFAM: alpha/beta hydrolase fold; KEGG: neu:NE1289 esterase/lipase/thioesterase family active site; alpha/beta hydrolase 989374..990375 Nitrosomonas eutropha C91 4272430 YP_747185.1 CDS Neut_0960 NC_008344.1 990472 991788 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: neu:NE1288 sensory transduction histidine kinases; sensor signal transduction histidine kinase 990472..991788 Nitrosomonas eutropha C91 4272431 YP_747186.1 CDS hfq NC_008344.1 992145 992387 D Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq 992145..992387 Nitrosomonas eutropha C91 4273533 YP_747187.1 CDS Neut_0962 NC_008344.1 992389 993522 D TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; KEGG: neu:NE1286 GTP-binding protein HflX; small GTP-binding protein 992389..993522 Nitrosomonas eutropha C91 4273534 YP_747188.1 CDS Neut_0963 NC_008344.1 993579 994769 D TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: neu:NE1285 band 7 protein; HflK protein 993579..994769 Nitrosomonas eutropha C91 4273535 YP_747189.1 CDS Neut_0964 NC_008344.1 994769 995647 D TIGRFAM: HflC protein; Archaeal flagellin, N-terminal related; PFAM: band 7 protein; KEGG: neu:NE1284 band 7 protein; HflC protein 994769..995647 Nitrosomonas eutropha C91 4273536 YP_747190.1 CDS Neut_0965 NC_008344.1 995776 995961 D KEGG: neu:NE1283 hypothetical protein; hypothetical protein 995776..995961 Nitrosomonas eutropha C91 4273537 YP_747191.1 CDS hisZ NC_008344.1 996042 997214 D May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase regulatory subunit 996042..997214 Nitrosomonas eutropha C91 4273538 YP_747192.1 CDS Neut_0967 NC_008344.1 997350 998648 D catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 997350..998648 Nitrosomonas eutropha C91 4273539 YP_747193.1 CDS Neut_0968 NC_008344.1 998716 999033 R KEGG: neu:NE1280 hypothetical protein; hypothetical protein complement(998716..999033) Nitrosomonas eutropha C91 4273540 YP_747194.1 CDS Neut_0969 NC_008344.1 999213 999509 R KEGG: neu:NE1279 hypothetical protein; hypothetical protein complement(999213..999509) Nitrosomonas eutropha C91 4273541 YP_747195.1 CDS Neut_0970 NC_008344.1 999685 1002060 R KEGG: neu:NE1278 ATP-dependent proteinase La 1 (lon) (class III heat-shock protein); TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATP-dependent protease La complement(999685..1002060) Nitrosomonas eutropha C91 4273542 YP_747196.1 CDS Neut_0971 NC_008344.1 1002210 1002659 R PFAM: CBS domain containing protein; KEGG: nmu:Nmul_A1169 putative signal-transduction protein with CBS domains; signal-transduction protein complement(1002210..1002659) Nitrosomonas eutropha C91 4273543 YP_747197.1 CDS Neut_0972 NC_008344.1 1002707 1003210 R KEGG: nmu:Nmul_A1168 hypothetical protein; hypothetical protein complement(1002707..1003210) Nitrosomonas eutropha C91 4273544 YP_747198.1 CDS Neut_0973 NC_008344.1 1003613 1004713 D PFAM: protein of unknown function DUF214; KEGG: mca:MCA1808 ABC-transporter permease protein, putative; hypothetical protein 1003613..1004713 Nitrosomonas eutropha C91 4273545 YP_747199.1 CDS Neut_0974 NC_008344.1 1004713 1005402 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mca:MCA1809 ABC transporter, ATP-binding protein; ABC transporter-like protein 1004713..1005402 Nitrosomonas eutropha C91 4273546 YP_747200.1 CDS Neut_0975 NC_008344.1 1005583 1006542 D PFAM: secretion protein HlyD family protein; KEGG: mca:MCA1810 hypothetical protein; secretion protein HlyD family protein 1005583..1006542 Nitrosomonas eutropha C91 4273547 YP_747201.1 CDS Neut_0976 NC_008344.1 1006756 1008567 R PFAM: sodium/hydrogen exchanger; KEGG: pae:PA3739 probable sodium/hydrogen antiporter; sodium/hydrogen exchanger complement(1006756..1008567) Nitrosomonas eutropha C91 4273548 YP_747202.1 CDS Neut_0977 NC_008344.1 1008937 1009623 D KEGG: neu:NE1275 hypothetical protein; hypothetical protein 1008937..1009623 Nitrosomonas eutropha C91 4273549 YP_747203.1 CDS Neut_0978 NC_008344.1 1010064 1011026 R PFAM: Integrase, catalytic region; KEGG: nwi:Nwi_2917 integrase, catalytic region; integrase catalytic subunit complement(1010064..1011026) Nitrosomonas eutropha C91 4274218 YP_747204.1 CDS Neut_0979 NC_008344.1 1011147 1012598 R PFAM: pyruvate kinase; KEGG: nmu:Nmul_A1507 pyruvate kinase; pyruvate kinase complement(1011147..1012598) Nitrosomonas eutropha C91 4274219 YP_747205.1 CDS Neut_0980 NC_008344.1 1012598 1012930 R KEGG: nmu:Nmul_A2196 hypothetical protein; hypothetical protein complement(1012598..1012930) Nitrosomonas eutropha C91 4274220 YP_747206.1 CDS Neut_0981 NC_008344.1 1013267 1013554 D hypothetical protein 1013267..1013554 Nitrosomonas eutropha C91 4274221 YP_747207.1 CDS Neut_0982 NC_008344.1 1013573 1013800 D KEGG: xcb:XC_0144 IS1480 transposase; hypothetical protein 1013573..1013800 Nitrosomonas eutropha C91 4274222 YP_747208.1 CDS Neut_0983 NC_008344.1 1013797 1014624 R PFAM: Integrase, catalytic region; KEGG: lpf:lpl1576 hypothetical protein; integrase catalytic subunit complement(1013797..1014624) Nitrosomonas eutropha C91 4274223 YP_747209.1 CDS Neut_0984 NC_008344.1 1014672 1014968 R PFAM: transposase IS3/IS911 family protein; KEGG: lpf:lpl1584 hypothetical protein; transposase IS3/IS911 family protein complement(1014672..1014968) Nitrosomonas eutropha C91 4274224 YP_747210.1 CDS Neut_0985 NC_008344.1 1015463 1015909 R PFAM: transposase, IS4 family protein; KEGG: xoo:XOO4403 putative transposase; transposase, IS4 family protein complement(1015463..1015909) Nitrosomonas eutropha C91 4274225 YP_747211.1 CDS Neut_0987 NC_008344.1 1016537 1017628 D TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: neu:NE2037 putative cation-efflux system signal peptide protein; RND family efflux transporter MFP subunit 1016537..1017628 Nitrosomonas eutropha C91 4274227 YP_747212.1 CDS Neut_0988 NC_008344.1 1017625 1020711 D PFAM: acriflavin resistance protein; KEGG: neu:NE2036 acriflavin resistance protein; acriflavin resistance protein 1017625..1020711 Nitrosomonas eutropha C91 4274228 YP_747213.1 CDS Neut_0989 NC_008344.1 1020719 1022203 R PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: aba:Acid345_4079 alpha amylase; alpha amylase complement(1020719..1022203) Nitrosomonas eutropha C91 4274229 YP_747214.1 CDS Neut_0990 NC_008344.1 1022363 1023202 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: neu:NE1215 short-chain dehydrogenase/reductase (SDR) superfamily; short-chain dehydrogenase/reductase SDR complement(1022363..1023202) Nitrosomonas eutropha C91 4274230 YP_747215.1 CDS Neut_0991 NC_008344.1 1023263 1023856 R PFAM: transferase hexapeptide repeat containing protein; KEGG: neu:NE1207 bacterial transferase hexapeptide repeat; hexapaptide repeat-containing transferase complement(1023263..1023856) Nitrosomonas eutropha C91 4274231 YP_747216.1 CDS Neut_0992 NC_008344.1 1023887 1024363 D PFAM: glutathione peroxidase; KEGG: neu:NE1206 glutathione peroxidase; glutathione peroxidase 1023887..1024363 Nitrosomonas eutropha C91 4274232 YP_747217.1 CDS Neut_0993 NC_008344.1 1024386 1024958 D responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase 1024386..1024958 Nitrosomonas eutropha C91 4274233 YP_747218.1 CDS Neut_0994 NC_008344.1 1025140 1025523 R PFAM: CBS domain containing protein; KEGG: neu:NE0524 CBS domain; signal transduction protein complement(1025140..1025523) Nitrosomonas eutropha C91 4274234 YP_747219.1 CDS Neut_0995 NC_008344.1 1025520 1025930 R PFAM: CBS domain containing protein; KEGG: neu:NE0525 CBS domain; signal transduction protein complement(1025520..1025930) Nitrosomonas eutropha C91 4274235 YP_747220.1 CDS Neut_0996 NC_008344.1 1026029 1026409 R PFAM: protein of unknown function UPF0044; KEGG: neu:NE0526 putative RNA-binding protein containing KH domain; hypothetical protein complement(1026029..1026409) Nitrosomonas eutropha C91 4274148 YP_747221.1 CDS Neut_0997 NC_008344.1 1026443 1027063 D PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: neu:NE0527 FtsJ cell division protein; ribosomal RNA methyltransferase RrmJ/FtsJ 1026443..1027063 Nitrosomonas eutropha C91 4274149 YP_747222.1 CDS Neut_0998 NC_008344.1 1027155 1029083 D KEGG: neu:NE0528 ATP-dependent zinc metallopeptidase (cell division ftsh) transmembrane protein; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 1027155..1029083 Nitrosomonas eutropha C91 4274150 YP_747223.1 CDS Neut_0999 NC_008344.1 1029107 1030009 D KEGG: neu:NE0529 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS; dihydropteroate synthase 1029107..1030009 Nitrosomonas eutropha C91 4274151 YP_747224.1 CDS glmM NC_008344.1 1030177 1031553 D catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 1030177..1031553 Nitrosomonas eutropha C91 4274152 YP_747225.1 CDS Neut_1001 NC_008344.1 1031674 1032687 D TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: neu:NE0531 phosphate-binding protein; phosphate binding protein 1031674..1032687 Nitrosomonas eutropha C91 4274153 YP_747226.1 CDS Neut_1002 NC_008344.1 1032865 1034295 D TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: neu:NE0532 uroporphyrinogen-III methylase; uroporphyrin-III C-methyltransferase 1032865..1034295 Nitrosomonas eutropha C91 4274154 YP_747227.1 CDS Neut_1003 NC_008344.1 1034332 1034571 R PFAM: SirA family protein; KEGG: ypm:YP0430 predicted redox protein, regulator of disulfide bond formation; hypothetical protein complement(1034332..1034571) Nitrosomonas eutropha C91 4274155 YP_747228.1 CDS Neut_1004 NC_008344.1 1034587 1035789 R PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: sfx:S2068 putative transport system permease protein; inner membrane protein complement(1034587..1035789) Nitrosomonas eutropha C91 4274156 YP_747229.1 CDS Neut_1005 NC_008344.1 1036486 1037388 R KEGG: xcb:XC_3476 hypothetical protein; hypothetical protein complement(1036486..1037388) Nitrosomonas eutropha C91 4274157 YP_747230.1 CDS Neut_1006 NC_008344.1 1037399 1038301 R KEGG: rme:Rmet_1265 conserved hypothetical protein 730; hypothetical protein complement(1037399..1038301) Nitrosomonas eutropha C91 4274158 YP_747231.1 CDS Neut_1007 NC_008344.1 1038590 1039714 R PFAM: ABC-2 type transporter; KEGG: neu:NE1211 putative ABC transporter permease protein; ABC transporter complement(1038590..1039714) Nitrosomonas eutropha C91 4274159 YP_747232.1 CDS Neut_1008 NC_008344.1 1039720 1040868 R PFAM: ABC-2 type transporter; KEGG: neu:NE1210 putative ABC transporter permease protein; ABC transporter complement(1039720..1040868) Nitrosomonas eutropha C91 4274160 YP_747233.1 CDS Neut_1009 NC_008344.1 1040865 1042649 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: neu:NE1209 ATPase component ABC-type multidrug transport system; ABC transporter-like protein complement(1040865..1042649) Nitrosomonas eutropha C91 4274161 YP_747234.1 CDS Neut_1010 NC_008344.1 1042639 1043679 R PFAM: secretion protein HlyD family protein; KEGG: neu:NE1208 HlyD family secretion protein; hypothetical protein complement(1042639..1043679) Nitrosomonas eutropha C91 4274162 YP_747235.1 CDS Neut_1011 NC_008344.1 1043765 1044373 R PFAM: regulatory protein, TetR; KEGG: eba:ebA6247 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(1043765..1044373) Nitrosomonas eutropha C91 4274163 YP_747236.1 CDS Neut_1012 NC_008344.1 1045070 1045360 R TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: neu:NE0845 DUF196; CRISPR-associated Cas2 family protein complement(1045070..1045360) Nitrosomonas eutropha C91 4274164 YP_747237.1 CDS Neut_1013 NC_008344.1 1045363 1046397 R TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: eba:ebA3283 hypothetical protein; CRISPR-associated Cas1 family protein complement(1045363..1046397) Nitrosomonas eutropha C91 4273856 YP_747238.1 CDS Neut_1014 NC_008344.1 1046414 1047040 R TIGRFAM: CRISPR-associated protein Cas4; KEGG: eba:ebA3284 predicted RecB family exonuclease protein; CRISPR-associated Cas4 family protein complement(1046414..1047040) Nitrosomonas eutropha C91 4273857 YP_747239.1 CDS Neut_1015 NC_008344.1 1047048 1047962 R TIGRFAM: CRISPR-associated protein, CT1132 family; CRISPR-associated protein, Csd2 family; PFAM: CRISPR-associated protein TM1801; KEGG: mca:MCA0654 CRISPR-associated TM1801 family protein; CRISPR-associated Csd2 family protein complement(1047048..1047962) Nitrosomonas eutropha C91 4273858 YP_747240.1 CDS Neut_1016 NC_008344.1 1047968 1049668 R TIGRFAM: CRISPR-associated protein, Csd1 family; KEGG: mca:MCA0655 CRISPR-associated CT1133 family protein; CRISPR-associated RAMP Csd1 family protein complement(1047968..1049668) Nitrosomonas eutropha C91 4273859 YP_747241.1 CDS Neut_1019 NC_008344.1 1052828 1054075 D PFAM: EAL domain protein; response regulator receiver; KEGG: neu:NE0566 domain of unknown function 2:response regulator receiver domain; response regulator receiver modulated diguanylate phosphodiesterase 1052828..1054075 Nitrosomonas eutropha C91 4273862 YP_747242.1 CDS Neut_1020 NC_008344.1 1054108 1054638 R PFAM: dihydrofolate reductase region; KEGG: neu:NE0567 dihydrofolate reductase; dihydrofolate reductase complement(1054108..1054638) Nitrosomonas eutropha C91 4273863 YP_747243.1 CDS thyA NC_008344.1 1054635 1055429 R ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase complement(1054635..1055429) Nitrosomonas eutropha C91 4273864 YP_747244.1 CDS Neut_1022 NC_008344.1 1055529 1057025 D PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: neu:NE0569 cytosol aminopeptidase; leucyl aminopeptidase 1055529..1057025 Nitrosomonas eutropha C91 4273865 YP_747245.1 CDS Neut_1023 NC_008344.1 1057057 1057374 D KEGG: neu:NE0570 possible lipase; lipase 1057057..1057374 Nitrosomonas eutropha C91 4273866 YP_747246.1 CDS Neut_1024 NC_008344.1 1057413 1058501 R KEGG: neu:NE0576 sulfate transport ATP-binding ABC transporter protein; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; sulfate ABC transporter ATPase complement(1057413..1058501) Nitrosomonas eutropha C91 4273867 YP_747247.1 CDS Neut_1025 NC_008344.1 1058513 1059382 R TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: neu:NE0577 sulfate transport ABC transporter protein; sulfate ABC transporter inner membrane subunit CysW complement(1058513..1059382) Nitrosomonas eutropha C91 4273868 YP_747248.1 CDS Neut_1026 NC_008344.1 1059390 1060223 R TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: neu:NE0578 sulfate transport ABC transporter protein; sulfate ABC transporter inner membrane subunit CysT complement(1059390..1060223) Nitrosomonas eutropha C91 4273869 YP_747249.1 CDS Neut_1027 NC_008344.1 1060304 1060561 R KEGG: neu:NE0579 domain of unknown function 2; hypothetical protein complement(1060304..1060561) Nitrosomonas eutropha C91 4273870 YP_747250.1 CDS Neut_1028 NC_008344.1 1060558 1061565 R TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: neu:NE0582 prokaryotic sulfate-/thiosulfate-binding protein; sulfate ABC transporter substrate-binding protein complement(1060558..1061565) Nitrosomonas eutropha C91 4273871 YP_747251.1 CDS Neut_1029 NC_008344.1 1061594 1063078 R KEGG: neu:NE0583 hypothetical protein; hypothetical protein complement(1061594..1063078) Nitrosomonas eutropha C91 4273872 YP_747252.1 CDS Neut_1031 NC_008344.1 1065284 1066126 D binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 1065284..1066126 Nitrosomonas eutropha C91 4273754 YP_747253.1 CDS Neut_1032 NC_008344.1 1066176 1066889 R PFAM: glutamine amidotransferase class-I; KEGG: neu:NE0585 hypothetical protein; glutamine amidotransferase complement(1066176..1066889) Nitrosomonas eutropha C91 4273755 YP_747254.1 CDS Neut_1033 NC_008344.1 1067151 1068545 D KEGG: neu:NE0586 hypothetical protein; hypothetical protein 1067151..1068545 Nitrosomonas eutropha C91 4273756 YP_747255.1 CDS Neut_1034 NC_008344.1 1068545 1069975 D PFAM: GTP-binding protein, HSR1-related; KEGG: neu:NE0587 hypothetical protein; HSR1-like GTP-binding protein 1068545..1069975 Nitrosomonas eutropha C91 4273757 YP_747256.1 CDS Neut_1035 NC_008344.1 1069970 1071952 R PFAM: phage integrase family protein; lipopolysaccharide biosynthesis; KEGG: neu:NE0588 phage integrase:chain length determinant protein; lipopolysaccharide biosynthesis protein complement(1069970..1071952) Nitrosomonas eutropha C91 4273758 YP_747257.1 CDS Neut_1036 NC_008344.1 1072175 1074976 R catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase complement(1072175..1074976) Nitrosomonas eutropha C91 4273759 YP_747258.2 CDS hemC NC_008344.1 1075100 1076026 D transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 1075100..1076026 Nitrosomonas eutropha C91 4273760 YP_747259.1 CDS Neut_1038 NC_008344.1 1076046 1076828 D PFAM: Uroporphyrinogen III synthase HEM4; KEGG: neu:NE0591 uroporphyrinogen III synthase HEM4; uroporphyrinogen-III synthase 1076046..1076828 Nitrosomonas eutropha C91 4273761 YP_747260.1 CDS Neut_1039 NC_008344.1 1076843 1077871 D PFAM: protein of unknown function DUF513, hemX; KEGG: neu:NE0592 possible uroporphyrin-III C-methyltransferase; hypothetical protein 1076843..1077871 Nitrosomonas eutropha C91 4273762 YP_747261.1 CDS Neut_1040 NC_008344.1 1077868 1079049 D PFAM: HemY domain protein; KEGG: neu:NE0593 putative protein porphyrin biosynthesis; HemY domain-containing protein 1077868..1079049 Nitrosomonas eutropha C91 4273763 YP_747262.1 CDS Neut_1041 NC_008344.1 1079056 1080102 R catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; CDP-6-deoxy-delta-3,4-glucoseen reductase complement(1079056..1080102) Nitrosomonas eutropha C91 4273764 YP_747263.1 CDS Neut_1042 NC_008344.1 1080134 1081039 D PFAM: NAD-dependent epimerase/dehydratase; KEGG: neu:NE0595 putative oxidoreductase protein; NAD-dependent epimerase/dehydratase 1080134..1081039 Nitrosomonas eutropha C91 4273765 YP_747264.1 CDS Neut_1043 NC_008344.1 1081099 1082319 D PFAM: type II secretion system protein; KEGG: neu:NE0596 bacterial type II secretion system protein; type II secretion system protein 1081099..1082319 Nitrosomonas eutropha C91 4273766 YP_747265.1 CDS Neut_1044 NC_008344.1 1082363 1083223 D PFAM: peptidase A24A, prepilin type IV; peptidase A24A domain protein; KEGG: neu:NE0597 prepilin cysteine protease (C20), type IV; prepilin peptidase 1082363..1083223 Nitrosomonas eutropha C91 4273767 YP_747266.1 CDS coaE NC_008344.1 1083227 1083838 D catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 1083227..1083838 Nitrosomonas eutropha C91 4273768 YP_747267.1 CDS Neut_1046 NC_008344.1 1083911 1084666 D PFAM: protein of unknown function DUF1342; KEGG: neu:NE0599 hypothetical protein; hypothetical protein 1083911..1084666 Nitrosomonas eutropha C91 4273769 YP_747268.1 CDS Neut_1047 NC_008344.1 1084683 1084877 D PFAM: protein of unknown function DUF329; KEGG: nmu:Nmul_A1006 protein of unknown function DUF329; hypothetical protein 1084683..1084877 Nitrosomonas eutropha C91 4273770 YP_747269.1 CDS Neut_1048 NC_008344.1 1084945 1086279 R catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase complement(1084945..1086279) Nitrosomonas eutropha C91 4273497 YP_747270.1 CDS Neut_1049 NC_008344.1 1086303 1087064 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(1086303..1087064) Nitrosomonas eutropha C91 4273498 YP_747271.1 CDS Neut_1050 NC_008344.1 1087162 1087719 D PFAM: Redoxin domain protein; KEGG: neu:NE0780 hypothetical protein; redoxin domain-containing protein 1087162..1087719 Nitrosomonas eutropha C91 4273499 YP_747272.1 CDS Neut_1051 NC_008344.1 1087722 1088525 D PFAM: inositol monophosphatase; KEGG: neu:NE0781 myo-inositol-1(or 4)-monophosphatase; inositol monophosphatase 1087722..1088525 Nitrosomonas eutropha C91 4273500 YP_747273.1 CDS Neut_1052 NC_008344.1 1088619 1090205 R PFAM: multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: neu:NE0782 putative periplasmic cell division protein (SufI); bilirubin oxidase complement(1088619..1090205) Nitrosomonas eutropha C91 4273501 YP_747274.1 CDS Neut_1053 NC_008344.1 1090448 1092187 D KEGG: neu:NE0783 hypothetical protein; hypothetical protein 1090448..1092187 Nitrosomonas eutropha C91 4273502 YP_747275.1 CDS Neut_1054 NC_008344.1 1092233 1092568 D similar to Wolinella succinogenes NrfJ encoded by GenBank Accession Number AJ245540; KEGG: neu:NE0784 putative (AJ245540) NrfJ [Wolinella succinogenes]; protein NrfJ 1092233..1092568 Nitrosomonas eutropha C91 4273503 YP_747276.1 CDS Neut_1056 NC_008344.1 1093036 1093482 D PFAM: transposase, IS4 family protein; KEGG: xoo:XOO4403 putative transposase; transposase, IS4 family protein 1093036..1093482 Nitrosomonas eutropha C91 4273505 YP_747277.1 CDS Neut_1057 NC_008344.1 1093894 1094784 D PFAM: O-methyltransferase, family 2; KEGG: syf:Synpcc7942_0499 hypothetical protein; O-methyltransferase family protein 1093894..1094784 Nitrosomonas eutropha C91 4273506 YP_747278.1 CDS Neut_1058 NC_008344.1 1094948 1095262 R KEGG: lpf:lpl1576 hypothetical protein; hypothetical protein complement(1094948..1095262) Nitrosomonas eutropha C91 4273507 YP_747279.1 CDS Neut_1059 NC_008344.1 1095543 1096358 R PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: bja:bll8020 putative ubiquinone/menaquinone biosynthesis methyltransferase; methyltransferase type 11 complement(1095543..1096358) Nitrosomonas eutropha C91 4273508 YP_747280.1 CDS Neut_1060 NC_008344.1 1096410 1097369 R PFAM: beta-lactamase; KEGG: rpc:RPC_2728 beta-lactamase; beta-lactamase complement(1096410..1097369) Nitrosomonas eutropha C91 4273509 YP_747281.1 CDS Neut_1061 NC_008344.1 1097366 1097980 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sdn:Sden_0899 methyltransferase type 11; methyltransferase type 12 complement(1097366..1097980) Nitrosomonas eutropha C91 4273510 YP_747282.1 CDS Neut_1062 NC_008344.1 1098090 1098581 R hypothetical protein complement(1098090..1098581) Nitrosomonas eutropha C91 4273511 YP_747283.1 CDS Neut_1063 NC_008344.1 1099145 1099585 R KEGG: neu:NE2427 pyrimidine dimer DNA glycosylase; pyrimidine dimer DNA glycosylase complement(1099145..1099585) Nitrosomonas eutropha C91 4273512 YP_747284.1 CDS Neut_1064 NC_008344.1 1099591 1100088 R PFAM: TspO/MBR family protein; KEGG: csa:Csal_0168 TspO and MBR like proteins; TspO and MBR like proteins complement(1099591..1100088) Nitrosomonas eutropha C91 4273513 YP_747285.1 CDS Neut_1065 NC_008344.1 1100131 1100280 R KEGG: sdn:Sden_3021 integrase, catalytic region; integrase catalytic subunit complement(1100131..1100280) Nitrosomonas eutropha C91 4273514 YP_747286.1 CDS Neut_1066 NC_008344.1 1100457 1100753 D PFAM: transposase IS3/IS911 family protein; KEGG: lpf:lpl1584 hypothetical protein; transposase IS3/IS911 family protein 1100457..1100753 Nitrosomonas eutropha C91 4273957 YP_747287.1 CDS Neut_1067 NC_008344.1 1100801 1101628 D PFAM: Integrase, catalytic region; KEGG: lpf:lpl1576 hypothetical protein; integrase catalytic subunit 1100801..1101628 Nitrosomonas eutropha C91 4273958 YP_747288.1 CDS Neut_1068 NC_008344.1 1101825 1102190 R KEGG: bxe:Bxe_A3767 putative transposase; transposase complement(1101825..1102190) Nitrosomonas eutropha C91 4273959 YP_747289.1 CDS Neut_1069 NC_008344.1 1102298 1103218 D PFAM: Integrase, catalytic region; KEGG: nwi:Nwi_2917 integrase, catalytic region; integrase catalytic subunit 1102298..1103218 Nitrosomonas eutropha C91 4273960 YP_747290.1 CDS Neut_1070 NC_008344.1 1103175 1103528 R PFAM: transposase IS3/IS911 family protein; KEGG: sdn:Sden_3021 integrase, catalytic region; transposase IS3/IS911 family protein complement(1103175..1103528) Nitrosomonas eutropha C91 4273961 YP_747291.1 CDS Neut_1071 NC_008344.1 1104006 1104983 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: par:Psyc_0012 probable nuclear receptor binding factor related protein; alcohol dehydrogenase complement(1104006..1104983) Nitrosomonas eutropha C91 4273962 YP_747292.1 CDS Neut_1072 NC_008344.1 1105098 1105874 R PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: pcr:Pcryo_2061 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1105098..1105874) Nitrosomonas eutropha C91 4273963 YP_747293.1 CDS Neut_1073 NC_008344.1 1105879 1107549 R PFAM: beta-lactamase; protein of unknown function DUF306, Meta and HslJ; KEGG: atc:AGR_C_1692 hypothetical protein; 6-aminohexanoate-dimer hydrolase complement(1105879..1107549) Nitrosomonas eutropha C91 4273964 YP_747294.1 CDS Neut_1074 NC_008344.1 1107904 1108587 D PFAM: Integrase, catalytic region; transposase IS3/IS911 family protein; KEGG: sdn:Sden_3021 integrase, catalytic region; integrase catalytic subunit 1107904..1108587 Nitrosomonas eutropha C91 4273965 YP_747295.1 CDS Neut_1075 NC_008344.1 1108863 1109012 D KEGG: sdn:Sden_3021 integrase, catalytic region; integrase catalytic subunit 1108863..1109012 Nitrosomonas eutropha C91 4273966 YP_747296.1 CDS Neut_1076 NC_008344.1 1109327 1112512 R SMART: AAA ATPase; KEGG: rpc:RPC_1184 ATPase; ATPase AAA complement(1109327..1112512) Nitrosomonas eutropha C91 4273967 YP_747297.1 CDS Neut_1077 NC_008344.1 1112514 1113497 R hypothetical protein complement(1112514..1113497) Nitrosomonas eutropha C91 4273968 YP_747298.1 CDS Neut_1078 NC_008344.1 1113502 1114812 R KEGG: lpf:lpl2488 hypothetical protein; hypothetical protein complement(1113502..1114812) Nitrosomonas eutropha C91 4273969 YP_747299.1 CDS Neut_1079 NC_008344.1 1115033 1117417 R PFAM: sucrose synthase; glycosyl transferase, group 1; KEGG: neu:NE1214 sucrose synthase:glycosyl transferase group 1; sucrose synthase complement(1115033..1117417) Nitrosomonas eutropha C91 4273970 YP_747300.1 CDS Neut_1080 NC_008344.1 1117428 1119566 R KEGG: neu:NE1213 glycosyl transferase group 1; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; Sucrose phosphate synthase, sucrose phosphatase-like region; sucrose-phosphate synthase; PFAM: glycosyl transferase, group 1; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; sucrose-phosphate synthase complement(1117428..1119566) Nitrosomonas eutropha C91 4273971 YP_747301.1 CDS Neut_1081 NC_008344.1 1119577 1120506 R PFAM: PfkB domain protein; KEGG: neu:NE1212 PfkB family of carbohydrate kinase; ribokinase-like domain-containing protein complement(1119577..1120506) Nitrosomonas eutropha C91 4273972 YP_747302.1 CDS Neut_1082 NC_008344.1 1120702 1122801 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B complement(1120702..1122801) Nitrosomonas eutropha C91 4273973 YP_747303.1 CDS Neut_1083 NC_008344.1 1122880 1124073 D PFAM: aminotransferase, class I and II; KEGG: neu:NE0786 aminotransferases class-I; class I and II aminotransferase 1122880..1124073 Nitrosomonas eutropha C91 4272311 YP_747304.1 CDS Neut_1084 NC_008344.1 1124459 1124731 R KEGG: neu:NE0787 hypothetical protein; response regulator receiver protein complement(1124459..1124731) Nitrosomonas eutropha C91 4272312 YP_747305.1 CDS Neut_1085 NC_008344.1 1125171 1126547 D KEGG: ddi:DDB0189729 hypothetical protein; hypothetical protein 1125171..1126547 Nitrosomonas eutropha C91 4272313 YP_747306.1 CDS Neut_1086 NC_008344.1 1126679 1127047 D KEGG: neu:NE0788 hypothetical protein; hypothetical protein 1126679..1127047 Nitrosomonas eutropha C91 4272314 YP_747307.1 CDS Neut_1087 NC_008344.1 1127186 1127878 D PFAM: peptidase C39, bacteriocin processing; KEGG: neu:NE0789 hypothetical protein; peptidase C39, bacteriocin processing 1127186..1127878 Nitrosomonas eutropha C91 4272315 YP_747308.1 CDS Neut_1088 NC_008344.1 1127903 1128403 D KEGG: neu:NE0790 hypothetical protein; hypothetical protein 1127903..1128403 Nitrosomonas eutropha C91 4272316 YP_747309.1 CDS Neut_1089 NC_008344.1 1128475 1129809 D KEGG: neu:NE0791 hypothetical protein; hypothetical protein 1128475..1129809 Nitrosomonas eutropha C91 4272317 YP_747310.1 CDS Neut_1090 NC_008344.1 1129864 1130394 R PFAM: protein of unknown function DUF442; KEGG: neu:NE0792 hypothetical protein; hypothetical protein complement(1129864..1130394) Nitrosomonas eutropha C91 4272318 YP_747311.1 CDS Neut_1091 NC_008344.1 1130595 1131698 D KEGG: neu:NE0793 riboflavin biosynthesis bifunctional RibD; TIGRFAM: riboflavin biosynthesis protein RibD; Riboflavin-specific deaminase-like; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein; riboflavin biosynthesis protein RibD 1130595..1131698 Nitrosomonas eutropha C91 4272319 YP_747312.1 CDS Neut_1092 NC_008344.1 1131804 1133024 D PFAM: glycosyl transferase, group 1; KEGG: neu:NE0794 glycosyl transferase group 1; group 1 glycosyl transferase 1131804..1133024 Nitrosomonas eutropha C91 4272320 YP_747313.1 CDS Neut_1093 NC_008344.1 1133125 1134447 D PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: tbd:Tbd_0961 UDP-glucose dehydrogenase; UDP-glucose 6-dehydrogenase 1133125..1134447 Nitrosomonas eutropha C91 4272321 YP_747314.1 CDS Neut_1094 NC_008344.1 1134583 1134765 D KEGG: hch:HCH_03287 transposase and inactivated derivatives; transposase and inactivated derivatives 1134583..1134765 Nitrosomonas eutropha C91 4272322 YP_747315.1 CDS Neut_1095 NC_008344.1 1134821 1135078 D hypothetical protein 1134821..1135078 Nitrosomonas eutropha C91 4272323 YP_747316.1 CDS Neut_1096 NC_008344.1 1135634 1136911 D PFAM: glycosyl transferase, group 1; KEGG: neu:NE0795 glycosyl transferases group 1; group 1 glycosyl transferase 1135634..1136911 Nitrosomonas eutropha C91 4272324 YP_747317.1 CDS Neut_1097 NC_008344.1 1136923 1138278 D KEGG: neu:NE0796 possible CapK protein; CapK protein 1136923..1138278 Nitrosomonas eutropha C91 4272325 YP_747318.1 CDS Neut_1098 NC_008344.1 1138280 1138900 R PFAM: Exopolysaccharide synthesis, ExoD; KEGG: neu:NE0797 hypothetical protein; exopolysaccharide synthesis, ExoD complement(1138280..1138900) Nitrosomonas eutropha C91 4272326 YP_747319.1 CDS Neut_1099 NC_008344.1 1139179 1139658 D KEGG: neu:NE0798 hypothetical protein; hypothetical protein 1139179..1139658 Nitrosomonas eutropha C91 4272327 YP_747320.1 CDS Neut_1100 NC_008344.1 1139748 1140905 D KEGG: neu:NE0799 hypothetical protein; hypothetical protein 1139748..1140905 Nitrosomonas eutropha C91 4272328 YP_747321.1 CDS Neut_1101 NC_008344.1 1140957 1141772 D KEGG: neu:NE0800 hypothetical protein; hypothetical protein 1140957..1141772 Nitrosomonas eutropha C91 4273586 YP_747322.1 CDS Neut_1102 NC_008344.1 1141791 1142864 D PFAM: permease YjgP/YjgQ family protein; KEGG: neu:NE0801 hypothetical protein; YjgP/YjgQ family permease 1141791..1142864 Nitrosomonas eutropha C91 4273587 YP_747323.1 CDS Neut_1103 NC_008344.1 1142864 1143922 D PFAM: permease YjgP/YjgQ family protein; KEGG: neu:NE0802 hypothetical protein; YjgP/YjgQ family permease 1142864..1143922 Nitrosomonas eutropha C91 4273588 YP_747324.1 CDS Neut_1104 NC_008344.1 1143939 1145156 D KEGG: neu:NE0803 CDP-alcohol phosphatidyltransferase; CDP-alcohol phosphatidyltransferase 1143939..1145156 Nitrosomonas eutropha C91 4273589 YP_747325.1 CDS Neut_1105 NC_008344.1 1145140 1146141 D PFAM: diacylglycerol kinase, catalytic region; KEGG: neu:NE0804 DAG-kinase catalytic domain (presumed); diacylglycerol kinase catalytic subunit 1145140..1146141 Nitrosomonas eutropha C91 4273590 YP_747326.1 CDS Neut_1106 NC_008344.1 1146155 1147123 D KEGG: neu:NE0805 hypothetical protein; hypothetical protein 1146155..1147123 Nitrosomonas eutropha C91 4273591 YP_747327.1 CDS Neut_1107 NC_008344.1 1147184 1147831 D KEGG: neu:NE0806 hypothetical protein; hypothetical protein 1147184..1147831 Nitrosomonas eutropha C91 4273592 YP_747328.1 CDS Neut_1108 NC_008344.1 1147842 1148318 R KEGG: neu:NE0807 hypothetical protein; hypothetical protein complement(1147842..1148318) Nitrosomonas eutropha C91 4273593 YP_747329.1 CDS Neut_1109 NC_008344.1 1148790 1151519 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 1148790..1151519 Nitrosomonas eutropha C91 4273594 YP_747330.1 CDS Neut_1110 NC_008344.1 1151699 1152304 D KEGG: neu:NE0809 rieske iron-sulfur protein 2Fe-2S subunit; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; ubiquinol-cytochrome c reductase, iron-sulfur subunit 1151699..1152304 Nitrosomonas eutropha C91 4273595 YP_747331.1 CDS Neut_1111 NC_008344.1 1152306 1153553 D PFAM: Cytochrome b/b6, N-terminal domain; Cytochrome b/b6, C-terminal domain; KEGG: neu:NE0810 cytochrome b/b6; cytochrome b/b6 domain-containing protein 1152306..1153553 Nitrosomonas eutropha C91 4273596 YP_747332.1 CDS Neut_1112 NC_008344.1 1153550 1154254 D PFAM: cytochrome c1; KEGG: neu:NE0811 cytochrome c1; cytochrome c1 1153550..1154254 Nitrosomonas eutropha C91 4273597 YP_747333.1 CDS Neut_1113 NC_008344.1 1154306 1154905 D PFAM: glutaredoxin; Glutathione S-transferase, N-terminal domain; KEGG: neu:NE0812 putative transcription modulator protein; glutathione S-transferase domain-containing protein 1154306..1154905 Nitrosomonas eutropha C91 4273598 YP_747334.1 CDS Neut_1114 NC_008344.1 1154902 1155330 D PFAM: Stringent starvation protein B; KEGG: neu:NE0813 putative stringent starvation protein B; ClpXP protease specificity-enhancing factor 1154902..1155330 Nitrosomonas eutropha C91 4273599 YP_747335.1 CDS Neut_1115 NC_008344.1 1155525 1155683 R KEGG: sec:SC0324 Int; hypothetical protein complement(1155525..1155683) Nitrosomonas eutropha C91 4273601 YP_747336.1 CDS Neut_1116 NC_008344.1 1155766 1156224 R KEGG: nwi:Nwi_2921 ISRm2011-2 transposase protein; ISRm2011-2 transposase protein complement(1155766..1156224) Nitrosomonas eutropha C91 4272397 YP_747337.1 CDS Neut_1117 NC_008344.1 1156366 1156791 R TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger, DksA/TraR C4-type; KEGG: neu:NE0455 prokaryotic dksA/traR C4-type zinc finger; transcriptional regulators, TraR/DksA family protein complement(1156366..1156791) Nitrosomonas eutropha C91 4272398 YP_747338.1 CDS Neut_1118 NC_008344.1 1157153 1158871 R PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: neu:NE1847 guanylate cyclase; adenylate/guanylate cyclase complement(1157153..1158871) Nitrosomonas eutropha C91 4272399 YP_747339.1 CDS Neut_1119 NC_008344.1 1158831 1159577 R KEGG: neu:NE1846 HD domain; TIGRFAM: metal dependent phophohydrolase; PFAM: HDIG domain protein; SMART: metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase complement(1158831..1159577) Nitrosomonas eutropha C91 4272400 YP_747340.1 CDS Neut_1120 NC_008344.1 1160248 1160487 R hypothetical protein complement(1160248..1160487) Nitrosomonas eutropha C91 4272401 YP_747341.1 CDS Neut_1121 NC_008344.1 1161242 1162792 R KEGG: lpp:plpp0083 hypothetical protein; hypothetical protein complement(1161242..1162792) Nitrosomonas eutropha C91 4272402 YP_747342.1 CDS Neut_1122 NC_008344.1 1162789 1163247 R KEGG: eba:ebA2664 hypothetical protein; hypothetical protein complement(1162789..1163247) Nitrosomonas eutropha C91 4272403 YP_747343.1 CDS Neut_1123 NC_008344.1 1163282 1163785 R KEGG: bpm:BURPS1710b_0309 inner membrane protein; hypothetical protein complement(1163282..1163785) Nitrosomonas eutropha C91 4272404 YP_747344.1 CDS Neut_1124 NC_008344.1 1163867 1164103 R KEGG: rso:RSc1869 hypothetical protein; hypothetical protein complement(1163867..1164103) Nitrosomonas eutropha C91 4272405 YP_747345.1 CDS Neut_1125 NC_008344.1 1164412 1165593 R PFAM: phage integrase family protein; KEGG: rfr:Rfer_1354 phage integrase; phage integrase family protein complement(1164412..1165593) Nitrosomonas eutropha C91 4272406 YP_747346.1 CDS Neut_1126 NC_008344.1 1166050 1166502 D KEGG: neu:NE1841 hypothetical protein; hypothetical protein 1166050..1166502 Nitrosomonas eutropha C91 4272408 YP_747347.1 CDS Neut_1127 NC_008344.1 1166591 1168054 R TIGRFAM: UbiD family decarboxylases; PFAM: Carboxylyase-related protein; KEGG: neu:NE1839 protein of unknown function DUF117; UbiD family decarboxylase complement(1166591..1168054) Nitrosomonas eutropha C91 4272409 YP_747348.1 CDS ubiA NC_008344.1 1168147 1169007 R catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase complement(1168147..1169007) Nitrosomonas eutropha C91 4272410 YP_747349.1 CDS Neut_1129 NC_008344.1 1169086 1169550 R PFAM: Chorismate lyase; KEGG: neu:NE1837 putative chorismate--pyruvate lyase; chorismate lyase complement(1169086..1169550) Nitrosomonas eutropha C91 4272411 YP_747350.1 CDS Neut_1130 NC_008344.1 1169690 1170088 R PFAM: response regulator receiver; KEGG: neu:NE1836 response regulator receiver domain; response regulator receiver protein complement(1169690..1170088) Nitrosomonas eutropha C91 4272412 YP_747351.1 CDS Neut_1131 NC_008344.1 1170253 1171662 R PFAM: cation transporter; KEGG: neu:NE1835 cation transport protein; cation transporter complement(1170253..1171662) Nitrosomonas eutropha C91 4272413 YP_747352.1 CDS trkA NC_008344.1 1171734 1173182 R involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein complement(1171734..1173182) Nitrosomonas eutropha C91 4274097 YP_747353.1 CDS Neut_1133 NC_008344.1 1173449 1174723 R KEGG: neu:NE1833 hypothetical protein; hypothetical protein complement(1173449..1174723) Nitrosomonas eutropha C91 4274098 YP_747354.1 CDS Neut_1134 NC_008344.1 1174856 1175347 R KEGG: neu:NE1832 outer membrane lipoprotein; outer membrane lipoprotein complement(1174856..1175347) Nitrosomonas eutropha C91 4274099 YP_747355.1 CDS Neut_1135 NC_008344.1 1175675 1176400 D TIGRFAM: septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC; Septum formation inhibitor MinC domain protein; KEGG: neu:NE1831 putative cell division inhibitor MinC; septum site-determining protein MinC 1175675..1176400 Nitrosomonas eutropha C91 4274100 YP_747356.1 CDS Neut_1136 NC_008344.1 1176426 1177235 D TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: neu:NE1830 ParA family ATPase; septum site-determining protein MinD 1176426..1177235 Nitrosomonas eutropha C91 4274101 YP_747357.1 CDS minE NC_008344.1 1177235 1177531 D works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 1177235..1177531 Nitrosomonas eutropha C91 4274102 YP_747358.1 CDS Neut_1138 NC_008344.1 1177588 1178274 D PFAM: outer membrane lipoprotein LolB; KEGG: neu:NE1828 possible lipoprotein localization protein LolB; outer membrane lipoprotein LolB 1177588..1178274 Nitrosomonas eutropha C91 4274103 YP_747359.1 CDS ipk NC_008344.1 1178299 1179135 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1178299..1179135 Nitrosomonas eutropha C91 4274104 YP_747360.1 CDS Neut_1140 NC_008344.1 1179312 1180262 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 1179312..1180262 Nitrosomonas eutropha C91 4274106 YP_747361.1 CDS Neut_1141 NC_008344.1 1180316 1180924 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 1180316..1180924 Nitrosomonas eutropha C91 4274107 YP_747362.1 CDS Neut_1142 NC_008344.1 1181029 1181616 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1181029..1181616 Nitrosomonas eutropha C91 4274108 YP_747363.1 CDS Neut_1143 NC_008344.1 1181671 1182762 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 1181671..1182762 Nitrosomonas eutropha C91 4274109 YP_747364.1 CDS Neut_1144 NC_008344.1 1183271 1184683 D dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 1183271..1184683 Nitrosomonas eutropha C91 4274110 YP_747365.1 CDS Neut_1145 NC_008344.1 1184710 1184844 D PFAM: Entericidin EcnAB; KEGG: neu:NE0686 hypothetical protein; entericidin EcnAB 1184710..1184844 Nitrosomonas eutropha C91 4274111 YP_747366.1 CDS leuD NC_008344.1 1184850 1185488 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 1184850..1185488 Nitrosomonas eutropha C91 4274112 YP_747367.1 CDS Neut_1147 NC_008344.1 1185514 1186584 D catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 1185514..1186584 Nitrosomonas eutropha C91 4273550 YP_747368.1 CDS Neut_1148 NC_008344.1 1186716 1187840 D catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 1186716..1187840 Nitrosomonas eutropha C91 4273551 YP_747369.1 CDS Neut_1149 NC_008344.1 1187957 1190353 D KEGG: neu:NE0690 possible transmembrane protein; transmembrane protein 1187957..1190353 Nitrosomonas eutropha C91 4273552 YP_747370.1 CDS truA NC_008344.1 1190467 1191300 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1190467..1191300 Nitrosomonas eutropha C91 4273553 YP_747371.1 CDS Neut_1151 NC_008344.1 1191312 1191938 D catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase 1191312..1191938 Nitrosomonas eutropha C91 4273554 YP_747372.1 CDS Neut_1152 NC_008344.1 1191925 1193124 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1191925..1193124 Nitrosomonas eutropha C91 4273555 YP_747373.1 CDS trpA NC_008344.1 1193177 1194001 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1193177..1194001 Nitrosomonas eutropha C91 4273556 YP_747374.1 CDS Neut_1154 NC_008344.1 1194006 1194896 D TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: neu:NE0695 acetyl-CoA carboxylase carboxyl transferase beta subunit; acetyl-CoA carboxylase, carboxyl transferase subunit beta 1194006..1194896 Nitrosomonas eutropha C91 4273557 YP_747375.1 CDS Neut_1155 NC_008344.1 1195022 1196308 D TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: neu:NE0696 cytoplasmic peptidoglycan synthetases, C-terminal; bifunctional folylpolyglutamate synthase/dihydrofolate synthase 1195022..1196308 Nitrosomonas eutropha C91 4273558 YP_747376.1 CDS Neut_1156 NC_008344.1 1196328 1196999 D PFAM: Sporulation domain protein; KEGG: neu:NE0697 possible transmembrane protein; sporulation domain-containing protein 1196328..1196999 Nitrosomonas eutropha C91 4273559 YP_747377.1 CDS Neut_1157 NC_008344.1 1196996 1197490 D PFAM: Colicin V production protein; KEGG: neu:NE0698 colicin V production protein; colicin V production protein 1196996..1197490 Nitrosomonas eutropha C91 4273560 YP_747378.1 CDS Neut_1158 NC_008344.1 1197597 1199114 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 1197597..1199114 Nitrosomonas eutropha C91 4273561 YP_747379.1 CDS Neut_1159 NC_008344.1 1199131 1200306 D catalyzes the conversion of O-succinylhomoserine into homocysteine; O-succinylhomoserine sulfhydrylase 1199131..1200306 Nitrosomonas eutropha C91 4273562 YP_747380.1 CDS Neut_1160 NC_008344.1 1200426 1201937 D threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 1200426..1201937 Nitrosomonas eutropha C91 4273563 YP_747381.1 CDS Neut_1161 NC_008344.1 1202273 1204333 D PFAM: chemotaxis sensory transducer; KEGG: neu:NE1251 bacterial chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1202273..1204333 Nitrosomonas eutropha C91 4273564 YP_747382.1 CDS Neut_1162 NC_008344.1 1204410 1209560 D PFAM: response regulator receiver; CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Hpt domain protein; KEGG: neu:NE1250 two-component hybrid sensor and regulator; CheA signal transduction histidine kinase 1204410..1209560 Nitrosomonas eutropha C91 4273565 YP_747383.1 CDS Neut_1163 NC_008344.1 1209631 1211397 D TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: bur:Bcep18194_A4937 rhs family protein; YD repeat-containing protein 1209631..1211397 Nitrosomonas eutropha C91 4273566 YP_747384.1 CDS ubiB NC_008344.1 1211586 1213100 R an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions; ubiquinone biosynthesis protein UbiB complement(1211586..1213100) Nitrosomonas eutropha C91 4273567 YP_747385.1 CDS Neut_1165 NC_008344.1 1213190 1213822 R KEGG: neu:NE1868 conserved hypothetical protein; hypothetical protein complement(1213190..1213822) Nitrosomonas eutropha C91 4274080 YP_747386.1 CDS Neut_1166 NC_008344.1 1213911 1214342 R KEGG: neu:NE1867 hypothetical protein; hypothetical protein complement(1213911..1214342) Nitrosomonas eutropha C91 4274081 YP_747387.1 CDS Neut_1167 NC_008344.1 1214568 1216703 D PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: neu:NE1866 probable chemotaxis sensor histidine kinase transcription regulator protein; CheA signal transduction histidine kinase 1214568..1216703 Nitrosomonas eutropha C91 4274082 YP_747388.1 CDS Neut_1168 NC_008344.1 1216775 1217296 D PFAM: CheW domain protein; KEGG: neu:NE1865 CheW-like domain; CheW protein 1216775..1217296 Nitrosomonas eutropha C91 4274083 YP_747389.1 CDS Neut_1169 NC_008344.1 1217383 1219638 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: neu:NE1864 HAMP domain:bacterial chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1217383..1219638 Nitrosomonas eutropha C91 4274084 YP_747390.1 CDS Neut_1170 NC_008344.1 1219779 1222124 D KEGG: neu:NE1863 probable chemotaxis transducer; TIGRFAM: PAS sensor protein; PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 1219779..1222124 Nitrosomonas eutropha C91 4274085 YP_747391.1 CDS Neut_1171 NC_008344.1 1222312 1223187 D PFAM: MCP methyltransferase, CheR-type; KEGG: neu:NE1861 CheR-type MCP methyl-transferase:generic methyl-transferase; chemotaxis protein CheR 1222312..1223187 Nitrosomonas eutropha C91 4274086 YP_747392.1 CDS Neut_1172 NC_008344.1 1223267 1223851 D catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors; chemoreceptor glutamine deamidase CheD 1223267..1223851 Nitrosomonas eutropha C91 4274087 YP_747393.1 CDS Neut_1173 NC_008344.1 1223882 1224949 D regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 1223882..1224949 Nitrosomonas eutropha C91 4274088 YP_747394.1 CDS Neut_1174 NC_008344.1 1225116 1225526 D PFAM: protein of unknown function DUF1123; KEGG: ret:RHE_CH00798 hypothetical protein; hypothetical protein 1225116..1225526 Nitrosomonas eutropha C91 4274089 YP_747395.1 CDS Neut_1175 NC_008344.1 1225718 1227241 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Rieske [2Fe-2S] domain protein; KEGG: neu:NE2303 uncharacterized NAD(FAD)-dependent dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(1225718..1227241) Nitrosomonas eutropha C91 4274090 YP_747396.1 CDS Neut_1176 NC_008344.1 1227503 1228507 D catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 1227503..1228507 Nitrosomonas eutropha C91 4274091 YP_747397.1 CDS Neut_1177 NC_008344.1 1228545 1229504 R PFAM: Glutathione S-transferase, C-terminal domain; KEGG: neu:NE0522 glutathione S-transferase C terminus; glutathione S-transferase domain-containing protein complement(1228545..1229504) Nitrosomonas eutropha C91 4274092 YP_747398.1 CDS Neut_1178 NC_008344.1 1229508 1229966 R PFAM: DoxX family protein; KEGG: sdn:Sden_0782 DoxX; DoxX family protein complement(1229508..1229966) Nitrosomonas eutropha C91 4274093 YP_747399.1 CDS Neut_1179 NC_008344.1 1230499 1231449 R PFAM: polysaccharide deacetylase; KEGG: neu:NE0847 hypothetical protein; polysaccharide deacetylase complement(1230499..1231449) Nitrosomonas eutropha C91 4274094 YP_747400.1 CDS Neut_1180 NC_008344.1 1231573 1232025 R PFAM: Phosphoglycerate mutase; KEGG: neu:NE0848 phosphoglycerate mutase family; phosphohistidine phosphatase, SixA complement(1231573..1232025) Nitrosomonas eutropha C91 4274095 YP_747401.1 CDS Neut_1181 NC_008344.1 1232114 1232803 R PFAM: protein of unknown function DUF125, transmembrane; KEGG: neu:NE0849 similar to nodulin 21; hypothetical protein complement(1232114..1232803) Nitrosomonas eutropha C91 4274096 YP_747402.1 CDS Neut_1182 NC_008344.1 1232806 1233510 R PFAM: phospholipase/Carboxylesterase; KEGG: neu:NE0850 phospholipase/carboxylesterase; carboxylesterase complement(1232806..1233510) Nitrosomonas eutropha C91 4273886 YP_747403.1 CDS Neut_1183 NC_008344.1 1233589 1234695 D TIGRFAM: Twin-arginine translocation pathway signal; PFAM: transglutaminase domain protein; KEGG: neu:NE0851 transglutaminase-like superfamily; twin-arginine translocation pathway signal 1233589..1234695 Nitrosomonas eutropha C91 4273887 YP_747404.1 CDS Neut_1184 NC_008344.1 1234902 1236623 R hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta complement(1234902..1236623) Nitrosomonas eutropha C91 4273888 YP_747405.1 CDS Neut_1185 NC_008344.1 1236632 1238467 R TIGRFAM: sulfite reductase [NADPH] flavoprotein, alpha chain; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding domain protein; flavodoxin/nitric oxide synthase; KEGG: neu:NE0853 sulfite reductase flavoprotein subunit; sulfite reductase (NADPH) flavoprotein subunit alpha complement(1236632..1238467) Nitrosomonas eutropha C91 4273889 YP_747406.1 CDS Neut_1186 NC_008344.1 1239012 1239941 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: neu:NE0854 bacterial regulatory protein, LysR family; transcriptional regulator CysB-like protein complement(1239012..1239941) Nitrosomonas eutropha C91 4273890 YP_747407.1 CDS Neut_1187 NC_008344.1 1240172 1240870 D catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase 1240172..1240870 Nitrosomonas eutropha C91 4273891 YP_747408.1 CDS Neut_1188 NC_008344.1 1240875 1241804 D with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 1240875..1241804 Nitrosomonas eutropha C91 4273892 YP_747409.1 CDS Neut_1189 NC_008344.1 1241865 1243148 D KEGG: neu:NE0857 GTP-binding elongation factor:elongation factor Tu domain 2; TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; sulfate adenylyltransferase, large subunit 1241865..1243148 Nitrosomonas eutropha C91 4273893 YP_747410.1 CDS Neut_1190 NC_008344.1 1243253 1246804 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: neu:NE0858 hypothetical protein; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1243253..1246804 Nitrosomonas eutropha C91 4273894 YP_747411.1 CDS Neut_1191 NC_008344.1 1246960 1248087 D PFAM: alanine dehydrogenase/PNT domain protein; KEGG: neu:NE0859 alanine dehydrogenase and pyridine nucleotide transhydrogenase; NAD(P)(+) transhydrogenase 1246960..1248087 Nitrosomonas eutropha C91 4273895 YP_747412.1 CDS Neut_1192 NC_008344.1 1248142 1248450 D KEGG: neu:NE0860 probable transmembrane NAD(P) transhydrogenase (alpha subunit part 2); transmembrane NAD(P) transhydrogenase subunit alpha subunit part 2 1248142..1248450 Nitrosomonas eutropha C91 4273896 YP_747413.1 CDS Neut_1193 NC_008344.1 1248451 1249830 D PFAM: NAD(P) transhydrogenase, beta subunit; KEGG: neu:NE0861 NAD(P) transhydrogenase beta subunit; NAD(P) transhydrogenase subunit beta 1248451..1249830 Nitrosomonas eutropha C91 4273897 YP_747414.1 CDS Neut_1194 NC_008344.1 1249852 1250664 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: neu:NE0862 hypothetical protein; Sel1 domain-containing protein complement(1249852..1250664) Nitrosomonas eutropha C91 4273898 YP_747415.1 CDS Neut_1195 NC_008344.1 1250944 1251408 R TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; KEGG: neu:NE0863 bacterioferritin; bacterioferritin complement(1250944..1251408) Nitrosomonas eutropha C91 4273899 YP_747416.1 CDS Neut_1196 NC_008344.1 1251462 1251662 R PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: ilo:IL1065 bacterioferritin-associated ferredoxin; BFD/(2Fe-2S)-binding domain-containing protein complement(1251462..1251662) Nitrosomonas eutropha C91 4273900 YP_747417.1 CDS Neut_1197 NC_008344.1 1252323 1252472 D KEGG: hch:HCH_07061 transposase and inactivated derivatives; transposase and inactivated derivatives 1252323..1252472 Nitrosomonas eutropha C91 4273901 YP_747418.1 CDS Neut_1198 NC_008344.1 1253186 1254217 D KEGG: neu:NE0864 hypothetical protein; hypothetical protein 1253186..1254217 Nitrosomonas eutropha C91 4273902 YP_747419.1 CDS Neut_1199 NC_008344.1 1254271 1255794 D PFAM: EAL domain protein; PAS fold-4 domain protein; KEGG: neu:NE0865 PAS domain:domain of unknown function 2; diguanylate phosphodiesterase 1254271..1255794 Nitrosomonas eutropha C91 4273903 YP_747420.1 CDS Neut_1200 NC_008344.1 1255811 1256698 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase complement(1255811..1256698) Nitrosomonas eutropha C91 4272160 YP_747421.1 CDS Neut_1201 NC_008344.1 1256736 1257866 R With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit complement(1256736..1257866) Nitrosomonas eutropha C91 4272161 YP_747422.1 CDS Neut_1202 NC_008344.1 1257857 1258327 R KEGG: neu:NE0868 phosphoribosylaminoimidazole carboxylase catalytic subunit protein; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit complement(1257857..1258327) Nitrosomonas eutropha C91 4272162 YP_747423.1 CDS Neut_1203 NC_008344.1 1258531 1258965 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: neu:NE0869 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 1258531..1258965 Nitrosomonas eutropha C91 4272163 YP_747424.1 CDS Neut_1204 NC_008344.1 1259036 1259674 D PFAM: manganese and iron superoxide dismutase; KEGG: neu:NE0870 manganese and iron superoxide dismutase (SODM); superoxide dismutase 1259036..1259674 Nitrosomonas eutropha C91 4272164 YP_747425.1 CDS hisG NC_008344.1 1259684 1260334 D short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase catalytic subunit 1259684..1260334 Nitrosomonas eutropha C91 4272165 YP_747426.1 CDS hisD NC_008344.1 1260356 1261654 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 1260356..1261654 Nitrosomonas eutropha C91 4272166 YP_747427.1 CDS Neut_1207 NC_008344.1 1261718 1262893 D TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: neu:NE0873 aromatic-ring hydroxylase (flavoprotein monooxygenase); ubiquinone biosynthesis hydroxylase 1261718..1262893 Nitrosomonas eutropha C91 4272167 YP_747428.1 CDS Neut_1208 NC_008344.1 1263057 1264070 D TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; KEGG: neu:NE0874 predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family; NifR3 family protein 1263057..1264070 Nitrosomonas eutropha C91 4272168 YP_747429.1 CDS Neut_1209 NC_008344.1 1264067 1264309 D PFAM: helix-turn-helix, Fis-type; KEGG: neu:NE0875 probable factor-for-inversion-stimulation transcription regulator protein; helix-turn-helix, Fis-type 1264067..1264309 Nitrosomonas eutropha C91 4272169 YP_747430.1 CDS purH NC_008344.1 1264319 1265881 D involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 1264319..1265881 Nitrosomonas eutropha C91 4272170 YP_747431.1 CDS Neut_1211 NC_008344.1 1265945 1267243 D catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 1265945..1267243 Nitrosomonas eutropha C91 4272171 YP_747432.1 CDS Neut_1212 NC_008344.1 1267390 1268364 D PFAM: Integrase, catalytic region; KEGG: nwi:Nwi_2917 integrase, catalytic region; integrase catalytic subunit 1267390..1268364 Nitrosomonas eutropha C91 4272172 YP_747433.1 CDS Neut_1213 NC_008344.1 1268361 1269527 D KEGG: neu:NE0879 esterase/lipase/thioesterase family active site:lipase (class 3); esterase/lipase/thioesterase family lipase 1268361..1269527 Nitrosomonas eutropha C91 4272173 YP_747434.1 CDS Neut_1214 NC_008344.1 1269612 1270199 R KEGG: pol:Bpro_2073 TPR repeat; hypothetical protein complement(1269612..1270199) Nitrosomonas eutropha C91 4272174 YP_747435.1 CDS Neut_1215 NC_008344.1 1270258 1272204 R SMART: helicase c2; KEGG: neu:NE0880 probable ATP-dependent DNA helicase-related protein; helicase c2 complement(1270258..1272204) Nitrosomonas eutropha C91 4272175 YP_747436.1 CDS Neut_1216 NC_008344.1 1272424 1274601 D PFAM: OstA family protein; Organic solvent tolerance protein; KEGG: neu:NE0881 putative organic solvent tolerance transmembrane protein; organic solvent tolerance protein 1272424..1274601 Nitrosomonas eutropha C91 4272176 YP_747437.1 CDS Neut_1217 NC_008344.1 1274667 1275941 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: neu:NE0882 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 1274667..1275941 Nitrosomonas eutropha C91 4271814 YP_747438.1 CDS Neut_1218 NC_008344.1 1276011 1277048 D KEGG: neu:NE0883 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase 1276011..1277048 Nitrosomonas eutropha C91 4271815 YP_747439.1 CDS ksgA NC_008344.1 1277050 1277820 D catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 1277050..1277820 Nitrosomonas eutropha C91 4271816 YP_747440.1 CDS Neut_1220 NC_008344.1 1277813 1278316 R KEGG: neu:NE0885 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; methylguanine DNA methyltransferase, ribonuclease domain protein; methylated-DNA--protein-cysteine methyltransferase complement(1277813..1278316) Nitrosomonas eutropha C91 4271817 YP_747441.1 CDS Neut_1221 NC_008344.1 1278376 1279809 R PFAM: helix-turn-helix- domain containing protein, AraC type; HhH-GPD family protein; Ada, metal-binding domain protein; AlkA domain protein; KEGG: pcu:pc1834 putative DNA-3-methyladenine glycosidase II; AraC family transcriptional regulator complement(1278376..1279809) Nitrosomonas eutropha C91 4271818 YP_747442.1 CDS Neut_1222 NC_008344.1 1279973 1280215 D KEGG: neu:NE0895 hypothetical protein; hypothetical protein 1279973..1280215 Nitrosomonas eutropha C91 4271819 YP_747443.1 CDS Neut_1223 NC_008344.1 1280631 1281101 D SMART: helix-turn-helix domain protein; KEGG: neu:NE0896 helix-turn-helix motif; XRE family transcriptional regulator protein 1280631..1281101 Nitrosomonas eutropha C91 4271820 YP_747444.1 CDS Neut_1224 NC_008344.1 1281132 1281455 D PFAM: transposase IS3/IS911 family protein; KEGG: mca:MCA1895 ISMca3, transposase, OrfA; transposase IS3/IS911 family protein 1281132..1281455 Nitrosomonas eutropha C91 4271821 YP_747445.1 CDS Neut_1226 NC_008344.1 1283086 1283193 R KEGG: neu:NE0516 protein disulfide-isomerase; protein disulfide-isomerase complement(1283086..1283193) Nitrosomonas eutropha C91 4271823 YP_747446.1 CDS Neut_1227 NC_008344.1 1283338 1284897 R PFAM: amino acid permease-associated region; KEGG: neu:NE0513 amino acid transporter; amino acid permease complement(1283338..1284897) Nitrosomonas eutropha C91 4271824 YP_747447.1 CDS rdgC NC_008344.1 1285421 1286305 R Required for efficient pilin antigenic variation; recombination associated protein complement(1285421..1286305) Nitrosomonas eutropha C91 4271825 YP_747448.1 CDS Neut_1229 NC_008344.1 1286548 1287321 R KEGG: neu:NE0506 TPR repeat; hypothetical protein complement(1286548..1287321) Nitrosomonas eutropha C91 4271827 YP_747449.1 CDS Neut_1230 NC_008344.1 1287353 1288381 D KEGG: neu:NE0505 ribosomal large subunit pseudouridine synthase D; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase 1287353..1288381 Nitrosomonas eutropha C91 4271828 YP_747450.1 CDS Neut_1231 NC_008344.1 1288604 1290010 D KEGG: neu:NE0504 glutamine synthetase type I, GlnA; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp; glutamine synthetase, type I 1288604..1290010 Nitrosomonas eutropha C91 4271829 YP_747451.1 CDS Neut_1232 NC_008344.1 1290164 1290634 D KEGG: neu:NE0503 hypothetical protein; hypothetical protein 1290164..1290634 Nitrosomonas eutropha C91 4271830 YP_747452.1 CDS Neut_1233 NC_008344.1 1290690 1291160 R PFAM: transposase, IS4 family protein; KEGG: eba:p2A101 putative transposase, fragment; transposase, IS4 family protein complement(1290690..1291160) Nitrosomonas eutropha C91 4272177 YP_747453.1 CDS Neut_1235 NC_008344.1 1292064 1292843 D PFAM: protein of unknown function DUF81; KEGG: neu:NE0467 domain of unknown function DUF81; hypothetical protein 1292064..1292843 Nitrosomonas eutropha C91 4272179 YP_747454.1 CDS Neut_1236 NC_008344.1 1292919 1293479 R PFAM: nitrogen-fixing NifU domain protein; KEGG: neu:NE1445 nitrogen-fixing protein NifU; NifU domain-containing protein complement(1292919..1293479) Nitrosomonas eutropha C91 4272180 YP_747455.1 CDS Neut_1237 NC_008344.1 1293489 1293971 R TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: neu:NE1446 NifU-like N terminal domain; SUF system FeS assembly protein, NifU family protein complement(1293489..1293971) Nitrosomonas eutropha C91 4272181 YP_747456.1 CDS Neut_1238 NC_008344.1 1293968 1295239 R TIGRFAM: cysteine desulfurases, SufS subfamily; PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: neu:NE1447 aminotransferase class-V; SufS subfamily cysteine desulfurase complement(1293968..1295239) Nitrosomonas eutropha C91 4272182 YP_747457.1 CDS Neut_1239 NC_008344.1 1295243 1296550 R TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: neu:NE1448 uncharacterized protein family UPF0051; FeS assembly protein SufD complement(1295243..1296550) Nitrosomonas eutropha C91 4272183 YP_747458.1 CDS Neut_1240 NC_008344.1 1296547 1297338 R KEGG: neu:NE1449 iron-regulated ABC transporter ATPase subunit SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase; FeS assembly ATPase SufC complement(1296547..1297338) Nitrosomonas eutropha C91 4272184 YP_747459.1 CDS Neut_1241 NC_008344.1 1297335 1298771 R with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB complement(1297335..1298771) Nitrosomonas eutropha C91 4272185 YP_747460.1 CDS Neut_1242 NC_008344.1 1298791 1299120 R TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: neu:NE1451 hypothetical HesB/YadR/YfhF family; iron-sulfur cluster assembly accessory protein complement(1298791..1299120) Nitrosomonas eutropha C91 4272186 YP_747461.1 CDS Neut_1243 NC_008344.1 1299146 1299613 R TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: neu:NE1452 hypothetical protein; BadM/Rrf2 family transcriptional regulator complement(1299146..1299613) Nitrosomonas eutropha C91 4272187 YP_747462.1 CDS Neut_1244 NC_008344.1 1299964 1301496 D catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 1299964..1301496 Nitrosomonas eutropha C91 4272188 YP_747463.1 CDS Neut_1245 NC_008344.1 1301660 1302124 D PFAM: Redoxin domain protein; KEGG: neu:NE1319 thioredoxin; redoxin domain-containing protein 1301660..1302124 Nitrosomonas eutropha C91 4272189 YP_747464.1 CDS Neut_1246 NC_008344.1 1302145 1302738 R PFAM: Lytic transglycosylase, catalytic; KEGG: neu:NE1318 SLT domain; lytic transglycosylase, catalytic complement(1302145..1302738) Nitrosomonas eutropha C91 4272190 YP_747465.1 CDS Neut_1247 NC_008344.1 1302726 1304432 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(1302726..1304432) Nitrosomonas eutropha C91 4272191 YP_747466.1 CDS Neut_1248 NC_008344.1 1304661 1305224 D hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 1304661..1305224 Nitrosomonas eutropha C91 4272192 YP_747467.1 CDS Neut_1249 NC_008344.1 1305330 1306334 D PFAM: Di-haem cytochrome c peroxidase; KEGG: neu:NE1315 cytochrome c551 peroxidase; cytochrome-c peroxidase 1305330..1306334 Nitrosomonas eutropha C91 4272193 YP_747468.1 CDS Neut_1250 NC_008344.1 1306549 1307847 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: neu:NE1314 probable two-component sensor; sensor signal transduction histidine kinase 1306549..1307847 Nitrosomonas eutropha C91 4273921 YP_747469.1 CDS Neut_1251 NC_008344.1 1307874 1308407 D PFAM: response regulator receiver; helix-turn-helix, Fis-type; KEGG: neu:NE1313 response regulator receiver domain:helix-turn-helix fis-type; response regulator receiver protein 1307874..1308407 Nitrosomonas eutropha C91 4273922 YP_747470.1 CDS Neut_1252 NC_008344.1 1308510 1310669 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: nmu:Nmul_A1260 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(1308510..1310669) Nitrosomonas eutropha C91 4273923 YP_747471.1 CDS Neut_1254 NC_008344.1 1312075 1312488 R KEGG: noc:Noc_2412 hypothetical protein; hypothetical protein complement(1312075..1312488) Nitrosomonas eutropha C91 4273925 YP_747472.1 CDS Neut_1255 NC_008344.1 1313023 1313415 D KEGG: ret:RHE_PB00143 probable insertion sequence transposase protein; insertion sequence transposase protein 1313023..1313415 Nitrosomonas eutropha C91 4273926 YP_747473.1 CDS Neut_1256 NC_008344.1 1313489 1313962 D KEGG: nwi:Nwi_2921 ISRm2011-2 transposase protein; ISRm2011-2 transposase protein 1313489..1313962 Nitrosomonas eutropha C91 4273927 YP_747474.1 CDS Neut_1257 NC_008344.1 1313993 1314328 D KEGG: nwi:Nwi_2921 ISRm2011-2 transposase protein; ISRm2011-2 transposase protein 1313993..1314328 Nitrosomonas eutropha C91 4273928 YP_747475.1 CDS Neut_1258 NC_008344.1 1314421 1315200 R KEGG: neu:NE1321 CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--serine O-phosphatidyltransferase complement(1314421..1315200) Nitrosomonas eutropha C91 4273929 YP_747476.1 CDS Neut_1259 NC_008344.1 1315230 1315880 R catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase complement(1315230..1315880) Nitrosomonas eutropha C91 4273930 YP_747477.1 CDS Neut_1260 NC_008344.1 1315885 1316901 R catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase complement(1315885..1316901) Nitrosomonas eutropha C91 4273931 YP_747478.1 CDS ilvH NC_008344.1 1316990 1317481 R with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit complement(1316990..1317481) Nitrosomonas eutropha C91 4273932 YP_747479.1 CDS Neut_1262 NC_008344.1 1317486 1319189 R TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: neu:NE1325 acetolactate synthase large subunit; acetolactate synthase large subunit complement(1317486..1319189) Nitrosomonas eutropha C91 4273933 YP_747480.1 CDS Neut_1263 NC_008344.1 1319515 1320966 R PFAM: peptidase U62, modulator of DNA gyrase; KEGG: neu:NE1326 putative modulator of DNA gyrase; C69 family peptidase complement(1319515..1320966) Nitrosomonas eutropha C91 4273934 YP_747481.1 CDS Neut_1264 NC_008344.1 1321090 1321953 R PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: neu:NE1327 carbon-nitrogen hydrolase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(1321090..1321953) Nitrosomonas eutropha C91 4273935 YP_747482.1 CDS Neut_1265 NC_008344.1 1322155 1326045 R TIGRFAM: conserved hypothetical protein; KEGG: neu:NE1328 possible transmembrane protein; hypothetical protein complement(1322155..1326045) Nitrosomonas eutropha C91 4273936 YP_747483.1 CDS Neut_1266 NC_008344.1 1326273 1329062 D catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 1326273..1329062 Nitrosomonas eutropha C91 4273937 YP_747484.1 CDS Neut_1267 NC_008344.1 1329528 1329842 D KEGG: neu:NE1390 serine/threonine specific protein phosphatase:Exonuclease SbcD; hypothetical protein 1329528..1329842 Nitrosomonas eutropha C91 4271869 YP_747485.1 CDS Neut_1268 NC_008344.1 1329899 1330561 R KEGG: neu:NE1853 hypothetical protein; hypothetical protein complement(1329899..1330561) Nitrosomonas eutropha C91 4271870 YP_747486.1 CDS Neut_1269 NC_008344.1 1330762 1332147 D catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 1330762..1332147 Nitrosomonas eutropha C91 4271871 YP_747487.1 CDS Neut_1270 NC_008344.1 1332166 1333071 D PFAM: aminoglycoside phosphotransferase; fructosamine kinase; KEGG: neu:NE1855 hypothetical protein; fructosamine kinase 1332166..1333071 Nitrosomonas eutropha C91 4271872 YP_747488.1 CDS Neut_1271 NC_008344.1 1333215 1334705 D KEGG: neu:NE1856 hypothetical protein; hypothetical protein 1333215..1334705 Nitrosomonas eutropha C91 4271873 YP_747489.1 CDS Neut_1272 NC_008344.1 1335245 1335676 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: dar:Daro_2296 protein of unknown function DUF6, transmembrane; hypothetical protein complement(1335245..1335676) Nitrosomonas eutropha C91 4271874 YP_747490.1 CDS Neut_1273 NC_008344.1 1335679 1336005 R KEGG: rfr:Rfer_1947 hypothetical protein; hypothetical protein complement(1335679..1336005) Nitrosomonas eutropha C91 4271875 YP_747491.1 CDS Neut_1274 NC_008344.1 1336021 1336419 R TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: pae:PA4383 integral membrane protein possibly involved in chromosome condensation; CrcB protein complement(1336021..1336419) Nitrosomonas eutropha C91 4271876 YP_747492.1 CDS Neut_1275 NC_008344.1 1336637 1337278 R PFAM: Chemotaxis phosphatase, CheZ; KEGG: neu:NE1924 putative chemotaxis protein CheZ; chemotaxis phosphatase, CheZ complement(1336637..1337278) Nitrosomonas eutropha C91 4271877 YP_747493.1 CDS Neut_1276 NC_008344.1 1337327 1337722 R PFAM: response regulator receiver; KEGG: neu:NE1923 response regulator receiver domain; response regulator receiver protein complement(1337327..1337722) Nitrosomonas eutropha C91 4271878 YP_747494.1 CDS Neut_1278 NC_008344.1 1339024 1339986 R PFAM: Integrase, catalytic region; KEGG: nwi:Nwi_2917 integrase, catalytic region; integrase catalytic subunit complement(1339024..1339986) Nitrosomonas eutropha C91 4271880 YP_747495.1 CDS Neut_1279 NC_008344.1 1340899 1341090 D KEGG: noc:Noc_0704 ATP-dependent dsDNA exonuclease (SbcC); ATP-dependent dsDNA exonuclease SbcC 1340899..1341090 Nitrosomonas eutropha C91 4272023 YP_747496.1 CDS Neut_1280 NC_008344.1 1341166 1341411 D hypothetical protein 1341166..1341411 Nitrosomonas eutropha C91 4272024 YP_747497.1 CDS Neut_1281 NC_008344.1 1341381 1343306 R PFAM: iron permease FTR1; KEGG: rpd:RPD_3637 iron permease FTR1; iron permease FTR1 complement(1341381..1343306) Nitrosomonas eutropha C91 4272025 YP_747498.1 CDS Neut_1282 NC_008344.1 1343657 1344136 R KEGG: neu:NE1513 hypothetical protein; hypothetical protein complement(1343657..1344136) Nitrosomonas eutropha C91 4272026 YP_747499.1 CDS Neut_1283 NC_008344.1 1344157 1345227 D PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: neu:NE1514 glycine cleavage T-protein (aminomethyl transferase); glycine cleavage T protein (aminomethyl transferase) 1344157..1345227 Nitrosomonas eutropha C91 4272027 YP_747500.1 CDS Neut_1284 NC_008344.1 1345250 1345906 R PFAM: Ankyrin; KEGG: neu:NE1515 ankyrin-repeat; ankyrin complement(1345250..1345906) Nitrosomonas eutropha C91 4272028 YP_747501.1 CDS Neut_1285 NC_008344.1 1345908 1346672 R TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: neu:NE1516 uncharacterized protein family UPF0006; TatD family hydrolase complement(1345908..1346672) Nitrosomonas eutropha C91 4272029 YP_747502.1 CDS Neut_1286 NC_008344.1 1346741 1347223 R PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: neu:NE1517 6-pyruvoyl tetrahydropterin synthase; 6-pyruvoyl tetrahydropterin synthase complement(1346741..1347223) Nitrosomonas eutropha C91 4272030 YP_747503.1 CDS Neut_1287 NC_008344.1 1347240 1348100 D PFAM: Radical SAM domain protein; KEGG: neu:NE1518 hypothetical protein; radical SAM domain-containing protein 1347240..1348100 Nitrosomonas eutropha C91 4272031 YP_747504.1 CDS Neut_1288 NC_008344.1 1348130 1348417 R KEGG: neu:NE1519 hypothetical protein; XRE family protein transcriptional regulator complement(1348130..1348417) Nitrosomonas eutropha C91 4272032 YP_747505.1 CDS Neut_1289 NC_008344.1 1348830 1349786 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: xcv:XCV2338 cobalt-zinc-cadmium resistance protein; cation diffusion facilitator family transporter complement(1348830..1349786) Nitrosomonas eutropha C91 4272033 YP_747506.1 CDS Neut_1290 NC_008344.1 1349811 1352300 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: xcv:XCV2336 copper-translocating P-type ATPase; heavy metal translocating P-type ATPase complement(1349811..1352300) Nitrosomonas eutropha C91 4272034 YP_747507.1 CDS Neut_1291 NC_008344.1 1352413 1354611 R catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein complement(1352413..1354611) Nitrosomonas eutropha C91 4272035 YP_747508.1 CDS glgC NC_008344.1 1354757 1356034 D catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 1354757..1356034 Nitrosomonas eutropha C91 4272036 YP_747509.1 CDS Neut_1293 NC_008344.1 1356100 1357818 D PFAM: glycoside hydrolase, family 57; KEGG: neu:NE2031 glycosyl hydrolase family 57; glycoside hydrolase 1356100..1357818 Nitrosomonas eutropha C91 4272037 YP_747510.1 CDS Neut_1294 NC_008344.1 1357884 1359908 D PFAM: glycoside hydrolase, family 57; KEGG: neu:NE2032 glycosyl hydrolase family 57; 4-alpha-glucanotransferase 1357884..1359908 Nitrosomonas eutropha C91 4272038 YP_747511.1 CDS Neut_1295 NC_008344.1 1359940 1362630 D KEGG: neu:NE2033 hypothetical protein; hypothetical protein 1359940..1362630 Nitrosomonas eutropha C91 4272039 YP_747512.1 CDS Neut_1296 NC_008344.1 1362855 1363592 R TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: neu:NE1398 putative DNA polymerase-related protein, bacteriophage-type; phage SPO1 DNA polymerase-like protein complement(1362855..1363592) Nitrosomonas eutropha C91 4272040 YP_747513.1 CDS Neut_1297 NC_008344.1 1363651 1364139 R TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: neu:NE1399 GCN5-related N-acetyltransferase; ribosomal-protein-alanine acetyltransferase complement(1363651..1364139) Nitrosomonas eutropha C91 4272294 YP_747514.1 CDS Neut_1298 NC_008344.1 1364142 1364813 R PFAM: peptidase M22, glycoprotease; KEGG: neu:NE1400 glycoprotease, (M22) metallo-protease family; peptidase M22, glycoprotease complement(1364142..1364813) Nitrosomonas eutropha C91 4272295 YP_747515.1 CDS Neut_1299 NC_008344.1 1364828 1365361 R TIGRFAM: 2'-5' RNA ligase; PFAM: 2',5' RNA ligase; KEGG: neu:NE1401 putative 2'-5' RNA ligase; 2'-5' RNA ligase complement(1364828..1365361) Nitrosomonas eutropha C91 4272296 YP_747516.1 CDS ispF NC_008344.1 1365361 1365864 R catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase complement(1365361..1365864) Nitrosomonas eutropha C91 4272297 YP_747517.1 CDS Neut_1302 NC_008344.1 1366626 1367183 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(1366626..1367183) Nitrosomonas eutropha C91 4272299 YP_747518.1 CDS Neut_1303 NC_008344.1 1367258 1368418 R KEGG: neu:NE0898 hypothetical protein; hypothetical protein complement(1367258..1368418) Nitrosomonas eutropha C91 4272300 YP_747519.1 CDS Neut_1304 NC_008344.1 1368545 1369552 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: neu:NE0899 D-isomer specific 2-hydroxyacid dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase 1368545..1369552 Nitrosomonas eutropha C91 4272301 YP_747520.1 CDS Neut_1305 NC_008344.1 1369597 1370052 R TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: sty:HCM1.151c putative mercuric resistance operon regulatory protein; transcriptional regulator MerR complement(1369597..1370052) Nitrosomonas eutropha C91 4272302 YP_747521.1 CDS Neut_1306 NC_008344.1 1370124 1370474 D PFAM: Mercuric transport protein MerT; KEGG: sty:HCM1.152 putative mercuric transport protein; mercuric transport protein 1370124..1370474 Nitrosomonas eutropha C91 4272303 YP_747522.1 CDS Neut_1307 NC_008344.1 1370490 1370765 D TIGRFAM: mercuric transport protein periplasmic component; PFAM: Heavy metal transport/detoxification protein; KEGG: rme:Rmet_6173 mercuric transport protein periplasmic component; mercuric transport periplasmic protein 1370490..1370765 Nitrosomonas eutropha C91 4272304 YP_747523.1 CDS Neut_1308 NC_008344.1 1370793 1371200 D PFAM: MerC mercury resistance protein; KEGG: neu:NE0840 putative mercury transport protein; mercury transport protein MerC 1370793..1371200 Nitrosomonas eutropha C91 4272305 YP_747524.1 CDS Neut_1309 NC_008344.1 1371239 1372921 D TIGRFAM: mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; Heavy metal transport/detoxification protein; KEGG: bxe:Bxe_C1213 putative mercuric ion reductase; mercuric reductase 1371239..1372921 Nitrosomonas eutropha C91 4272306 YP_747525.1 CDS Neut_1310 NC_008344.1 1372939 1373304 D TIGRFAM: mercuric resistence transcriptional repressor protein MerD; PFAM: regulatory protein, MerR; KEGG: sty:HCM1.159 putative mercuric resistance operon coregulator; transcriptional regulator MerD 1372939..1373304 Nitrosomonas eutropha C91 4272307 YP_747526.1 CDS Neut_1311 NC_008344.1 1373301 1373537 D PFAM: MerE family protein; KEGG: sty:HCM1.160 hypothetical protein; mercury resistance protein 1373301..1373537 Nitrosomonas eutropha C91 4272308 YP_747527.1 CDS Neut_1312 NC_008344.1 1373603 1373815 D KEGG: sty:HCM1.161 hypothetical protein; hypothetical protein 1373603..1373815 Nitrosomonas eutropha C91 4272309 YP_747528.1 CDS Neut_1313 NC_008344.1 1373945 1374502 D PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: sty:HCM1.168 resolvase; resolvase domain-containing protein 1373945..1374502 Nitrosomonas eutropha C91 4272310 YP_747529.1 CDS Neut_1314 NC_008344.1 1374505 1377477 D PFAM: transposase Tn3 family protein; KEGG: sec:SC008 transposase; transposase Tn3 family protein 1374505..1377477 Nitrosomonas eutropha C91 4273939 YP_747530.1 CDS Neut_1315 NC_008344.1 1377613 1378872 R PFAM: protein of unknown function DUF1504; KEGG: neu:NE1228 hypothetical protein; hypothetical protein complement(1377613..1378872) Nitrosomonas eutropha C91 4273940 YP_747531.1 CDS Neut_1316 NC_008344.1 1378930 1379976 R TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: neu:NE1229 peptide chain release factor 2; peptide chain release factor 2 complement(1378930..1379976) Nitrosomonas eutropha C91 4273941 YP_747532.1 CDS Neut_1317 NC_008344.1 1380152 1381999 R PFAM: Patatin; KEGG: mca:MCA0076 patatin family protein; patatin complement(1380152..1381999) Nitrosomonas eutropha C91 4273942 YP_747533.1 CDS Neut_1318 NC_008344.1 1382017 1383264 D PFAM: transposase, mutator type; KEGG: eba:p2A367 transposase; transposase, mutator type 1382017..1383264 Nitrosomonas eutropha C91 4273943 YP_747534.1 CDS Neut_1319 NC_008344.1 1383417 1383893 D KEGG: mfa:Mfla_0674 hypothetical protein; hypothetical protein 1383417..1383893 Nitrosomonas eutropha C91 4273944 YP_747535.1 CDS Neut_1320 NC_008344.1 1384412 1384867 R KEGG: eba:ebA849 hypothetical protein; hypothetical protein complement(1384412..1384867) Nitrosomonas eutropha C91 4273945 YP_747536.1 CDS Neut_1321 NC_008344.1 1384994 1385821 R PFAM: Integrase, catalytic region; KEGG: lpf:lpl1576 hypothetical protein; integrase catalytic subunit complement(1384994..1385821) Nitrosomonas eutropha C91 4273946 YP_747537.1 CDS Neut_1322 NC_008344.1 1385869 1386165 R PFAM: transposase IS3/IS911 family protein; KEGG: lpf:lpl1584 hypothetical protein; transposase IS3/IS911 family protein complement(1385869..1386165) Nitrosomonas eutropha C91 4273947 YP_747538.1 CDS Neut_1323 NC_008344.1 1386298 1386549 D KEGG: sma:SAV634 IS110 family transposase; hypothetical protein 1386298..1386549 Nitrosomonas eutropha C91 4273948 YP_747539.1 CDS Neut_1324 NC_008344.1 1386598 1386744 D KEGG: pol:Bpro_4706 integrase, catalytic region; integrase catalytic subunit 1386598..1386744 Nitrosomonas eutropha C91 4273949 YP_747540.1 CDS Neut_1325 NC_008344.1 1387562 1388791 D KEGG: nmu:Nmul_A0679 cytochrome c peroxidase; cytochrome c peroxidase 1387562..1388791 Nitrosomonas eutropha C91 4273950 YP_747541.1 CDS Neut_1326 NC_008344.1 1388893 1389240 R KEGG: nmu:Nmul_A0074 protein of unknown function DUF326; hypothetical protein complement(1388893..1389240) Nitrosomonas eutropha C91 4273951 YP_747542.1 CDS Neut_1327 NC_008344.1 1389486 1389824 R KEGG: ana:alr1718 hypothetical protein; hypothetical protein complement(1389486..1389824) Nitrosomonas eutropha C91 4273952 YP_747543.1 CDS Neut_1328 NC_008344.1 1390965 1392056 D KEGG: neu:NE1870 putative spermidine/putrescine transport system ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase 1390965..1392056 Nitrosomonas eutropha C91 4273953 YP_747544.1 CDS Neut_1329 NC_008344.1 1392053 1392955 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: neu:NE1871 putative spermidine/putrescine transport system permease protein; binding-protein-dependent transport system inner membrane protein 1392053..1392955 Nitrosomonas eutropha C91 4273954 YP_747545.1 CDS Neut_1330 NC_008344.1 1392975 1393760 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: neu:NE1872 putative spermidine/putrescine transport system permease protein; binding-protein-dependent transport system inner membrane protein 1392975..1393760 Nitrosomonas eutropha C91 4273955 YP_747546.1 CDS Neut_1331 NC_008344.1 1393757 1394866 D PFAM: extracellular solute-binding protein, family 1; KEGG: neu:NE1873 bacterial extracellular solute-binding protein, family 1; extracellular solute-binding protein 1393757..1394866 Nitrosomonas eutropha C91 4273956 YP_747547.1 CDS Neut_1332 NC_008344.1 1394871 1395179 D KEGG: neu:NE1874 putative ferredoxin 2fe-2s protein; ferredoxin 2fe-2s protein 1394871..1395179 Nitrosomonas eutropha C91 4273636 YP_747548.1 CDS Neut_1333 NC_008344.1 1395499 1396302 D KEGG: stc:str1376 type II restriction-modification system modification subunit; hypothetical protein 1395499..1396302 Nitrosomonas eutropha C91 4273637 YP_747549.1 CDS Neut_1334 NC_008344.1 1396304 1397752 D PFAM: Eco57I restriction endonuclease; KEGG: cte:CT1160 type III restriction system endonuclease, putative; Eco57I restriction endonuclease 1396304..1397752 Nitrosomonas eutropha C91 4273638 YP_747550.1 CDS Neut_1335 NC_008344.1 1397756 1400218 D KEGG: mpe:MYPE5580 hypothetical protein; superfamily II DNA/RNA helicase 1397756..1400218 Nitrosomonas eutropha C91 4273639 YP_747551.1 CDS Neut_1336 NC_008344.1 1400280 1404041 R KEGG: neu:NE0833 HrpA-like helicases; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD/DEAH box helicase domain protein; ATP-dependent helicase HrpA complement(1400280..1404041) Nitrosomonas eutropha C91 4273640 YP_747552.1 CDS Neut_1337 NC_008344.1 1404048 1404527 R TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: neu:NE0832 DUF157; hypothetical protein complement(1404048..1404527) Nitrosomonas eutropha C91 4273641 YP_747553.1 CDS Neut_1338 NC_008344.1 1404558 1405667 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase complement(1404558..1405667) Nitrosomonas eutropha C91 4273642 YP_747554.1 CDS Neut_1339 NC_008344.1 1405812 1407467 R PFAM: DNA mismatch repair protein MutS domain protein; KEGG: neu:NE0830 DNA mismatch repair protein MutS family, C-terminal domain; DNA mismatch repair protein MutS domain-containing protein complement(1405812..1407467) Nitrosomonas eutropha C91 4273643 YP_747555.1 CDS Neut_1340 NC_008344.1 1407615 1408193 D KEGG: neu:NE0829 hypothetical protein; hypothetical protein 1407615..1408193 Nitrosomonas eutropha C91 4273644 YP_747556.1 CDS Neut_1341 NC_008344.1 1408206 1409360 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: neu:NE0828 HlyD family secretion protein; RND family efflux transporter MFP subunit 1408206..1409360 Nitrosomonas eutropha C91 4273645 YP_747557.1 CDS Neut_1342 NC_008344.1 1409357 1410028 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: neu:NE0827 ATPase component ABC-type (unclassified) transport system; ABC transporter-like protein 1409357..1410028 Nitrosomonas eutropha C91 4273646 YP_747558.1 CDS Neut_1343 NC_008344.1 1410025 1411227 D PFAM: protein of unknown function DUF214; KEGG: neu:NE0826 putative ABC transport system permease protein; hypothetical protein 1410025..1411227 Nitrosomonas eutropha C91 4273647 YP_747559.1 CDS Neut_1344 NC_008344.1 1411233 1412432 D PFAM: protein of unknown function DUF214; KEGG: neu:NE0825 putative ABC transport system permease protein; hypothetical protein 1411233..1412432 Nitrosomonas eutropha C91 4273648 YP_747560.1 CDS Neut_1345 NC_008344.1 1412442 1412990 R KEGG: neu:NE0824 hypothetical protein; hypothetical protein complement(1412442..1412990) Nitrosomonas eutropha C91 4273649 YP_747561.1 CDS Neut_1346 NC_008344.1 1413562 1414407 D TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: helix-turn-helix- domain containing protein, AraC type; methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: lic:LIC13402 methylated-DNA--protein-cysteine methyltransferase transcription regulator; AraC family transcriptional regulator 1413562..1414407 Nitrosomonas eutropha C91 4273650 YP_747562.1 CDS Neut_1347 NC_008344.1 1414410 1415123 D SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: rso:RSc2567 hypothetical protein; prolyl 4-hydroxylase subunit alpha 1414410..1415123 Nitrosomonas eutropha C91 4273651 YP_747563.1 CDS Neut_1349 NC_008344.1 1415533 1416159 D PFAM: 2OG-Fe(II) oxygenase; KEGG: cps:CPS_4217 oxidoreductase, 2OG-Fe(II) oxygenase family; 2OG-Fe(II) oxygenase 1415533..1416159 Nitrosomonas eutropha C91 4274045 YP_747564.1 CDS Neut_1350 NC_008344.1 1416289 1416876 R PFAM: protein of unknown function DUF938; KEGG: son:SO2050 hypothetical protein; hypothetical protein complement(1416289..1416876) Nitrosomonas eutropha C91 4274046 YP_747565.1 CDS Neut_1351 NC_008344.1 1416897 1417277 R PFAM: glutaredoxin; KEGG: ilo:IL0689 glutaredoxin family protein; glutaredoxin complement(1416897..1417277) Nitrosomonas eutropha C91 4274047 YP_747566.1 CDS Neut_1353 NC_008344.1 1417631 1418104 R KEGG: neu:NE1553 possible transposase; transposase complement(1417631..1418104) Nitrosomonas eutropha C91 4274049 YP_747567.1 CDS Neut_1354 NC_008344.1 1418334 1418942 R PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: eba:ebA5076 putative gluthione S-transferase; glutathione S-transferase domain-containing protein complement(1418334..1418942) Nitrosomonas eutropha C91 4274050 YP_747568.1 CDS Neut_1355 NC_008344.1 1419881 1423447 D TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V, RecC subunit; KEGG: psp:PSPPH_0694 exodeoxyribonuclease V, gamma subunit; exodeoxyribonuclease V subunit gamma 1419881..1423447 Nitrosomonas eutropha C91 4274051 YP_747569.1 CDS Neut_1356 NC_008344.1 1423463 1427149 D TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: pfo:Pfl_0689 exodeoxyribonuclease V, beta subunit; exodeoxyribonuclease V subunit beta 1423463..1427149 Nitrosomonas eutropha C91 4274052 YP_747570.1 CDS Neut_1357 NC_008344.1 1427146 1429188 D TIGRFAM: exodeoxyribonuclease V, alpha subunit; KEGG: pst:PSPTO0778 exodeoxyribonuclease V, alpha subunit; exodeoxyribonuclease V subunit alpha 1427146..1429188 Nitrosomonas eutropha C91 4274053 YP_747571.1 CDS Neut_1358 NC_008344.1 1429207 1430511 R catalyzes the removal of amino acids from the N termini of peptides; aminopeptidase 2 complement(1429207..1430511) Nitrosomonas eutropha C91 4274054 YP_747572.1 CDS Neut_1359 NC_008344.1 1430534 1430962 R TIGRFAM: PIN domain family protein; KEGG: mbo:Mb3349c hypothetical protein; PilT domain-containing protein complement(1430534..1430962) Nitrosomonas eutropha C91 4274055 YP_747573.1 CDS Neut_1360 NC_008344.1 1430962 1431240 R KEGG: eba:ebA5867 hypothetical protein; hypothetical protein complement(1430962..1431240) Nitrosomonas eutropha C91 4274056 YP_747574.1 CDS Neut_1361 NC_008344.1 1431292 1432629 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: neu:NE1408 sensory transduction histidine kinases; periplasmic sensor signal transduction histidine kinase complement(1431292..1432629) Nitrosomonas eutropha C91 4274057 YP_747575.1 CDS Neut_1362 NC_008344.1 1432626 1433312 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: neu:NE1409 possible response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain; two component transcriptional regulator, winged helix family protein complement(1432626..1433312) Nitrosomonas eutropha C91 4274058 YP_747576.1 CDS Neut_1363 NC_008344.1 1433381 1433671 R PFAM: Propeptide, PepSY amd peptidase M4; KEGG: neu:NE1410 hypothetical protein; peptidase complement(1433381..1433671) Nitrosomonas eutropha C91 4274059 YP_747577.1 CDS Neut_1364 NC_008344.1 1433757 1434230 R KEGG: ddi:DDB0167791 hypothetical protein; hypothetical protein complement(1433757..1434230) Nitrosomonas eutropha C91 4274060 YP_747578.1 CDS Neut_1365 NC_008344.1 1434408 1434959 D PFAM: protein of unknown function DUF924; KEGG: sde:Sde_0785 hypothetical protein; hypothetical protein 1434408..1434959 Nitrosomonas eutropha C91 4274061 YP_747579.1 CDS Neut_1366 NC_008344.1 1435095 1436084 R TIGRFAM: integron integrase; PFAM: phage integrase family protein; KEGG: dar:Daro_3427 integron integrase; integron integrase complement(1435095..1436084) Nitrosomonas eutropha C91 4274062 YP_747580.1 CDS Neut_1367 NC_008344.1 1436210 1437010 D KEGG: sty:STY3192 hypothetical protein; hypothetical protein 1436210..1437010 Nitrosomonas eutropha C91 4274253 YP_747581.1 CDS Neut_1368 NC_008344.1 1437087 1437584 D hypothetical protein 1437087..1437584 Nitrosomonas eutropha C91 4274254 YP_747582.1 CDS Neut_1369 NC_008344.1 1437608 1438108 D KEGG: aci:ACIAD3551 hypothetical protein; putative conserved domain; hypothetical protein 1437608..1438108 Nitrosomonas eutropha C91 4274255 YP_747583.1 CDS Neut_1370 NC_008344.1 1438231 1438554 D PFAM: transposase IS3/IS911 family protein; KEGG: mca:MCA1895 ISMca3, transposase, OrfA; transposase IS3/IS911 family protein 1438231..1438554 Nitrosomonas eutropha C91 4274256 YP_747584.1 CDS Neut_1371 NC_008344.1 1438611 1439459 D PFAM: Integrase, catalytic region; KEGG: pol:Bpro_5204 integrase, catalytic region; integrase catalytic subunit 1438611..1439459 Nitrosomonas eutropha C91 4274257 YP_747585.1 CDS Neut_1372 NC_008344.1 1439456 1439605 D KEGG: mac:MA2417 hypothetical protein; hypothetical protein 1439456..1439605 Nitrosomonas eutropha C91 4274258 YP_747586.1 CDS Neut_1373 NC_008344.1 1441061 1441936 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rso:RS00906 probable transcription regulator protein; LysR family transcriptional regulator 1441061..1441936 Nitrosomonas eutropha C91 4274259 YP_747587.1 CDS Neut_1374 NC_008344.1 1441992 1442315 D PFAM: transposase IS3/IS911 family protein; KEGG: mca:MCA1895 ISMca3, transposase, OrfA; transposase IS3/IS911 family protein 1441992..1442315 Nitrosomonas eutropha C91 4274260 YP_747588.1 CDS Neut_1375 NC_008344.1 1442372 1443220 D PFAM: Integrase, catalytic region; KEGG: pol:Bpro_5204 integrase, catalytic region; integrase catalytic subunit 1442372..1443220 Nitrosomonas eutropha C91 4274261 YP_747589.1 CDS Neut_1376 NC_008344.1 1443672 1444142 D PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: rso:RS03882 hypothetical protein; 3-demethylubiquinone-9 3-methyltransferase 1443672..1444142 Nitrosomonas eutropha C91 4274262 YP_747590.1 CDS Neut_1377 NC_008344.1 1444338 1445954 D PFAM: Dak kinase; Dak phosphatase; KEGG: nmu:Nmul_A2726 glycerone kinase; Glycerone kinase 1444338..1445954 Nitrosomonas eutropha C91 4274263 YP_747591.1 CDS Neut_1378 NC_008344.1 1446138 1446572 R KEGG: neu:NE0900 hypothetical protein; hypothetical protein complement(1446138..1446572) Nitrosomonas eutropha C91 4274264 YP_747592.1 CDS Neut_1379 NC_008344.1 1446598 1449996 R PFAM: PDZ/DHR/GLGF domain protein; peptidase M28; KEGG: neu:NE0901 PDZ domain (also known as DHR or GLGF); peptidase M28 complement(1446598..1449996) Nitrosomonas eutropha C91 4274265 YP_747593.1 CDS Neut_1380 NC_008344.1 1450172 1451281 D PFAM: WD40 domain protein beta Propeller; KEGG: neu:NE0902 periplasmic component of the Tol biopolymer transport system; WD40 domain-containing protein 1450172..1451281 Nitrosomonas eutropha C91 4274266 YP_747594.1 CDS Neut_1381 NC_008344.1 1451370 1452647 R PFAM: cytochrome c, class I; KEGG: neu:NE0903 probable cytochrome c; cytochrome c, class I complement(1451370..1452647) Nitrosomonas eutropha C91 4274267 YP_747595.1 CDS Neut_1382 NC_008344.1 1452644 1453363 R KEGG: neu:NE0904 possible cytochrome c; cytochrome c complement(1452644..1453363) Nitrosomonas eutropha C91 4274268 YP_747596.1 CDS Neut_1383 NC_008344.1 1453551 1453895 D KEGG: neu:NE0905 hypothetical protein; hypothetical protein 1453551..1453895 Nitrosomonas eutropha C91 4274269 YP_747597.1 CDS Neut_1384 NC_008344.1 1453884 1455737 R KEGG: neu:NE0906 cell division protein; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH complement(1453884..1455737) Nitrosomonas eutropha C91 4273991 YP_747598.1 CDS Neut_1385 NC_008344.1 1455948 1457054 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: neu:NE0907 alcohol dehydrogenase class III and related dehydrogenases; alcohol dehydrogenase 1455948..1457054 Nitrosomonas eutropha C91 4273992 YP_747599.1 CDS Neut_1386 NC_008344.1 1457067 1457936 D PFAM: putative esterase; KEGG: neu:NE0908 probable hydrolase oxidoreductase protein; carboxylesterase 1457067..1457936 Nitrosomonas eutropha C91 4273993 YP_747600.1 CDS Neut_1387 NC_008344.1 1458222 1459394 R PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: neu:NE0909 Orn/DAP/Arg decarboxylase family 2; ornithine decarboxylase complement(1458222..1459394) Nitrosomonas eutropha C91 4273994 YP_747601.1 CDS Neut_1388 NC_008344.1 1459919 1460188 D KEGG: neu:NE0910 hypothetical protein; hypothetical protein 1459919..1460188 Nitrosomonas eutropha C91 4273995 YP_747602.1 CDS rimO NC_008344.1 1460630 1461967 D catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; 30S ribosomal protein S12 methylthiotransferase 1460630..1461967 Nitrosomonas eutropha C91 4273996 YP_747603.1 CDS Neut_1390 NC_008344.1 1462570 1463400 D TIGRFAM: PEP motif putative anchor-like; KEGG: neu:NE0912 hypothetical protein; PEP motif-containing protein 1462570..1463400 Nitrosomonas eutropha C91 4273997 YP_747604.1 CDS Neut_1391 NC_008344.1 1463690 1464007 D PFAM: BolA family protein; KEGG: neu:NE0913 BolA-like protein; BolA family protein 1463690..1464007 Nitrosomonas eutropha C91 4273998 YP_747605.1 CDS Neut_1392 NC_008344.1 1464067 1464672 D PFAM: LemA family protein; KEGG: neu:NE0914 LemA protein; LemA family protein 1464067..1464672 Nitrosomonas eutropha C91 4273999 YP_747606.1 CDS Neut_1393 NC_008344.1 1464692 1465576 D PFAM: protein of unknown function DUF477; KEGG: neu:NE0915 hypothetical protein; hypothetical protein 1464692..1465576 Nitrosomonas eutropha C91 4274000 YP_747607.1 CDS Neut_1394 NC_008344.1 1465590 1466093 D PFAM: protein of unknown function DUF477; KEGG: neu:NE0916 hypothetical protein; hypothetical protein 1465590..1466093 Nitrosomonas eutropha C91 4274001 YP_747608.1 CDS Neut_1395 NC_008344.1 1466393 1466896 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; RNA polymerase factor sigma-70 1466393..1466896 Nitrosomonas eutropha C91 4274002 YP_747609.1 CDS Neut_1396 NC_008344.1 1466893 1467615 D KEGG: neu:NE0918 hypothetical protein; hypothetical protein 1466893..1467615 Nitrosomonas eutropha C91 4274003 YP_747610.1 CDS Neut_1397 NC_008344.1 1467709 1470027 D PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: neu:NE0919 ABC transporter, fused permease and ATPase domains; ABC transporter-like protein 1467709..1470027 Nitrosomonas eutropha C91 4274004 YP_747611.1 CDS Neut_1398 NC_008344.1 1470024 1470491 D KEGG: neu:NE0920 hypothetical protein; hypothetical protein 1470024..1470491 Nitrosomonas eutropha C91 4274005 YP_747612.1 CDS Neut_1399 NC_008344.1 1470458 1470673 R KEGG: neu:NE0921 hypothetical protein; hypothetical protein complement(1470458..1470673) Nitrosomonas eutropha C91 4274006 YP_747613.1 CDS Neut_1400 NC_008344.1 1470721 1470954 R hypothetical protein complement(1470721..1470954) Nitrosomonas eutropha C91 4274007 YP_747614.1 CDS Neut_1401 NC_008344.1 1471004 1473301 D catalyze the formation of cyanophycin which may act to store excess nitrogen; cyanophycin synthetase 1471004..1473301 Nitrosomonas eutropha C91 4274008 YP_747615.1 CDS Neut_1402 NC_008344.1 1473322 1475910 D catalyze the formation of cyanophycin which may act to store excess nitrogen; cyanophycin synthetase 1473322..1475910 Nitrosomonas eutropha C91 4274201 YP_747616.1 CDS Neut_1403 NC_008344.1 1476057 1477001 R PFAM: multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: neu:NE0924 multicopper oxidase type 1; multicopper oxidase, type 3 complement(1476057..1477001) Nitrosomonas eutropha C91 4274202 YP_747617.1 CDS Neut_1404 NC_008344.1 1477045 1477428 R PFAM: cytochrome c, class I; KEGG: neu:NE0925 cytochrome c, class IC:cytochrome c, class I; cytochrome c, class I complement(1477045..1477428) Nitrosomonas eutropha C91 4274203 YP_747618.1 CDS Neut_1405 NC_008344.1 1477428 1478126 R PFAM: cytochrome c, class I; KEGG: neu:NE0926 cytochrome c, class I; cytochrome c, class I complement(1477428..1478126) Nitrosomonas eutropha C91 4274204 YP_747619.1 CDS Neut_1406 NC_008344.1 1478164 1479225 R PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: neu:NE0927 multicopper oxidase type 1; multicopper oxidase, type 3 complement(1478164..1479225) Nitrosomonas eutropha C91 4274205 YP_747620.1 CDS Neut_1407 NC_008344.1 1479526 1479990 D TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: neu:NE0928 hypothetical protein; BadM/Rrf2 family transcriptional regulator 1479526..1479990 Nitrosomonas eutropha C91 4274206 YP_747621.1 CDS Neut_1408 NC_008344.1 1479978 1483877 R PFAM: protein of unknown function DUF490; KEGG: neu:NE0929 putative signal peptide protein; hypothetical protein complement(1479978..1483877) Nitrosomonas eutropha C91 4274207 YP_747622.1 CDS Neut_1409 NC_008344.1 1483879 1485528 R PFAM: surface antigen (D15); KEGG: neu:NE0930 putative lipoprotein; surface antigen (D15) complement(1483879..1485528) Nitrosomonas eutropha C91 4274208 YP_747623.1 CDS Neut_1410 NC_008344.1 1485830 1486480 D PFAM: Uracil-DNA glycosylase superfamily; KEGG: neu:NE0931 hypothetical protein; uracil-DNA glycosylase superfamily protein 1485830..1486480 Nitrosomonas eutropha C91 4274209 YP_747624.1 CDS Neut_1411 NC_008344.1 1486501 1486689 D PFAM: 4-oxalocrotonate tautomerase; KEGG: neu:NE0932 putative isomerase; 4-oxalocrotonate tautomerase 1486501..1486689 Nitrosomonas eutropha C91 4274210 YP_747625.1 CDS uvrC NC_008344.1 1486703 1488517 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 1486703..1488517 Nitrosomonas eutropha C91 4274211 YP_747626.1 CDS Neut_1414 NC_008344.1 1489467 1489709 R KEGG: neu:NE1122 hypothetical protein; hypothetical protein complement(1489467..1489709) Nitrosomonas eutropha C91 4274213 YP_747627.1 CDS Neut_1415 NC_008344.1 1490211 1492592 D PFAM: peptidase S45, penicillin amidase; KEGG: neu:NE1123 penicillin amidase; penicillin amidase 1490211..1492592 Nitrosomonas eutropha C91 4274214 YP_747628.1 CDS Neut_1416 NC_008344.1 1492957 1494315 D PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: neu:NE1124 response regulatory protein; Fis family two component sigma-54-specific transcriptional regulator 1492957..1494315 Nitrosomonas eutropha C91 4274215 YP_747629.1 CDS Neut_1417 NC_008344.1 1494356 1495945 D PFAM: AMP-dependent synthetase and ligase; KEGG: neu:NE1125 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 1494356..1495945 Nitrosomonas eutropha C91 4274216 YP_747630.1 CDS Neut_1418 NC_008344.1 1495942 1497177 D PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: neu:NE1126 Orn/DAP/Arg decarboxylases family 2; orn/DAP/Arg decarboxylase 2 1495942..1497177 Nitrosomonas eutropha C91 4274217 YP_747631.1 CDS Neut_1419 NC_008344.1 1497335 1499182 D PFAM: asparagine synthase; KEGG: neu:NE1127 asparagine synthase; asparagine synthase 1497335..1499182 Nitrosomonas eutropha C91 4272723 YP_747632.1 CDS Neut_1420 NC_008344.1 1499502 1500314 D KEGG: neu:NE1128 hypothetical protein; hypothetical protein 1499502..1500314 Nitrosomonas eutropha C91 4272724 YP_747633.1 CDS Neut_1421 NC_008344.1 1500515 1500985 R PFAM: transposase, IS4 family protein; KEGG: xcb:XC_2134 IS1480 transposase; transposase, IS4 family protein complement(1500515..1500985) Nitrosomonas eutropha C91 4272725 YP_747634.1 CDS Neut_1423 NC_008344.1 1501394 1501633 D KEGG: neu:NE1129 hypothetical protein; hypothetical protein 1501394..1501633 Nitrosomonas eutropha C91 4272727 YP_747635.1 CDS Neut_1424 NC_008344.1 1501626 1502852 D KEGG: neu:NE1130 hypothetical protein; hypothetical protein 1501626..1502852 Nitrosomonas eutropha C91 4272728 YP_747636.1 CDS Neut_1425 NC_008344.1 1502852 1505806 D KEGG: nmu:Nmul_A1957 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 1502852..1505806 Nitrosomonas eutropha C91 4272729 YP_747637.1 CDS Neut_1426 NC_008344.1 1506285 1506701 R PFAM: OsmC family protein; KEGG: neu:NE1136 putative redox protein; OsmC family protein complement(1506285..1506701) Nitrosomonas eutropha C91 4272730 YP_747638.1 CDS Neut_1427 NC_008344.1 1506702 1507775 R KEGG: neu:NE1137 putative DNA polymerase III (delta subunit) protein; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; DNA polymerase III subunit delta complement(1506702..1507775) Nitrosomonas eutropha C91 4272731 YP_747639.1 CDS Neut_1428 NC_008344.1 1507790 1508284 R PFAM: Rare lipoprotein B; KEGG: neu:NE1138 putative lipoprotein B precursor transmembrane; rare lipoprotein B complement(1507790..1508284) Nitrosomonas eutropha C91 4272732 YP_747640.1 CDS leuS NC_008344.1 1508304 1510910 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(1508304..1510910) Nitrosomonas eutropha C91 4272733 YP_747641.1 CDS queA NC_008344.1 1511065 1512105 D Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 1511065..1512105 Nitrosomonas eutropha C91 4272734 YP_747642.1 CDS tgt NC_008344.1 1512102 1513187 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 1512102..1513187 Nitrosomonas eutropha C91 4272735 YP_747643.1 CDS Neut_1432 NC_008344.1 1513252 1513716 D TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: neu:NE1142 putative preprotein translocase YajC subunit; preprotein translocase subunit YajC 1513252..1513716 Nitrosomonas eutropha C91 4272736 YP_747644.1 CDS secD NC_008344.1 1513803 1515650 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 1513803..1515650 Nitrosomonas eutropha C91 4272737 YP_747645.1 CDS secF NC_008344.1 1515675 1516607 D forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 1515675..1516607 Nitrosomonas eutropha C91 4272738 YP_747646.1 CDS Neut_1435 NC_008344.1 1516647 1517024 D PFAM: protein of unknown function DUF971; KEGG: neu:NE1145 hypothetical protein; hypothetical protein 1516647..1517024 Nitrosomonas eutropha C91 4272739 YP_747647.1 CDS Neut_1436 NC_008344.1 1517077 1517808 D TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: neu:NE1146 ubiquinone/menaquinone biosynthesis methlytransferase; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase LpxD 1517077..1517808 Nitrosomonas eutropha C91 4272740 YP_747648.1 CDS Neut_1437 NC_008344.1 1517861 1518829 R catalyzes the formation of putrescine from agmatine; agmatinase complement(1517861..1518829) Nitrosomonas eutropha C91 4272656 YP_747649.1 CDS lspA NC_008344.1 1518993 1519475 R lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase complement(1518993..1519475) Nitrosomonas eutropha C91 4272657 YP_747650.1 CDS ileS NC_008344.1 1519517 1522324 R IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase complement(1519517..1522324) Nitrosomonas eutropha C91 4272658 YP_747651.1 CDS Neut_1440 NC_008344.1 1522326 1523303 R KEGG: neu:NE1150 cytidylyltransferase:riboflavin kinase / FAD synthetase; TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase / FAD synthetase; cytidylyltransferase; riboflavin biosynthesis protein RibF complement(1522326..1523303) Nitrosomonas eutropha C91 4272659 YP_747652.1 CDS Neut_1441 NC_008344.1 1523415 1523846 R KEGG: neu:NE1151 possible sec-independent protein translocase protein TatC; sec-independent protein translocase protein TatC complement(1523415..1523846) Nitrosomonas eutropha C91 4272660 YP_747653.1 CDS Neut_1442 NC_008344.1 1524113 1526257 D PFAM: extracellular solute-binding protein, family 5; KEGG: neu:NE1152 bacterial extracellular solute-binding protein, family 5; extracellular solute-binding protein 1524113..1526257 Nitrosomonas eutropha C91 4272661 YP_747654.1 CDS Neut_1443 NC_008344.1 1526267 1527244 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: neu:NE1153 oligopeptide ABC transporter; binding-protein-dependent transport system inner membrane protein 1526267..1527244 Nitrosomonas eutropha C91 4272662 YP_747655.1 CDS Neut_1444 NC_008344.1 1527376 1529031 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; KEGG: neu:NE1154 domain of unknown function, DUF9:HAMP domain; diguanylate cyclase 1527376..1529031 Nitrosomonas eutropha C91 4272663 YP_747656.1 CDS Neut_1445 NC_008344.1 1529080 1530024 D PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: neu:NE1155 DnaJ N-terminal domain:DnaJ C terminal domain; heat shock protein DnaJ domain-containing protein 1529080..1530024 Nitrosomonas eutropha C91 4272664 YP_747657.1 CDS Neut_1446 NC_008344.1 1530027 1530332 D KEGG: neu:NE1156 bacterial regulatory proteins, MerR family; MerR family transcriptional regulator 1530027..1530332 Nitrosomonas eutropha C91 4272665 YP_747658.1 CDS Neut_1447 NC_008344.1 1530420 1531283 D KEGG: neu:NE1157 hypothetical protein; hypothetical protein 1530420..1531283 Nitrosomonas eutropha C91 4272666 YP_747659.1 CDS Neut_1448 NC_008344.1 1531300 1531839 D PFAM: NUDIX hydrolase; KEGG: neu:NE1158 NUDIX hydrolase; NUDIX hydrolase 1531300..1531839 Nitrosomonas eutropha C91 4272667 YP_747660.1 CDS Neut_1449 NC_008344.1 1533357 1533842 R hypothetical protein complement(1533357..1533842) Nitrosomonas eutropha C91 4272669 YP_747661.1 CDS Neut_1450 NC_008344.1 1533832 1534089 R hypothetical protein complement(1533832..1534089) Nitrosomonas eutropha C91 4272670 YP_747662.1 CDS Neut_1451 NC_008344.1 1534092 1534583 R KEGG: bbr:BB1714 phage-related hypothetical protein; hypothetical protein complement(1534092..1534583) Nitrosomonas eutropha C91 4272671 YP_747663.1 CDS Neut_1452 NC_008344.1 1534583 1534903 R hypothetical protein complement(1534583..1534903) Nitrosomonas eutropha C91 4272621 YP_747664.1 CDS Neut_1453 NC_008344.1 1534900 1535232 R hypothetical protein complement(1534900..1535232) Nitrosomonas eutropha C91 4272622 YP_747665.1 CDS Neut_1454 NC_008344.1 1535485 1536420 R hypothetical protein complement(1535485..1536420) Nitrosomonas eutropha C91 4272623 YP_747666.1 CDS Neut_1455 NC_008344.1 1536430 1539213 R KEGG: hch:HCH_05649 hypothetical protein; hypothetical protein complement(1536430..1539213) Nitrosomonas eutropha C91 4272624 YP_747667.1 CDS Neut_1456 NC_008344.1 1539200 1539403 R KEGG: hch:HCH_05650 hypothetical protein; hypothetical protein complement(1539200..1539403) Nitrosomonas eutropha C91 4272625 YP_747668.1 CDS Neut_1457 NC_008344.1 1539400 1539627 R KEGG: hch:HCH_05651 hypothetical protein; hypothetical protein complement(1539400..1539627) Nitrosomonas eutropha C91 4272626 YP_747669.1 CDS Neut_1458 NC_008344.1 1539635 1540345 R KEGG: hch:HCH_05652 hypothetical protein; hypothetical protein complement(1539635..1540345) Nitrosomonas eutropha C91 4272627 YP_747670.1 CDS Neut_1459 NC_008344.1 1540402 1541571 R KEGG: hch:HCH_05654 hypothetical protein; hypothetical protein complement(1540402..1541571) Nitrosomonas eutropha C91 4272628 YP_747671.1 CDS Neut_1460 NC_008344.1 1541564 1543939 R KEGG: bbr:BB1706 putative tail component of prophage; hypothetical protein complement(1541564..1543939) Nitrosomonas eutropha C91 4272629 YP_747672.1 CDS Neut_1461 NC_008344.1 1543936 1544184 R KEGG: pae:PA0635 hypothetical protein; hypothetical protein complement(1543936..1544184) Nitrosomonas eutropha C91 4272630 YP_747673.1 CDS Neut_1462 NC_008344.1 1544223 1544573 R KEGG: ppu:PP1574 hypothetical protein; hypothetical protein complement(1544223..1544573) Nitrosomonas eutropha C91 4272631 YP_747674.1 CDS Neut_1463 NC_008344.1 1544582 1545298 R KEGG: ppu:PP1573 major tail protein, putative; major tail protein complement(1544582..1545298) Nitrosomonas eutropha C91 4272632 YP_747675.1 CDS Neut_1464 NC_008344.1 1545304 1545666 R KEGG: ppu:PP1572 hypothetical protein; hypothetical protein complement(1545304..1545666) Nitrosomonas eutropha C91 4272633 YP_747676.1 CDS Neut_1465 NC_008344.1 1545663 1546196 R TIGRFAM: phage protein, HK97 gp10 family; PFAM: TP901-1 ORF40 family protein; KEGG: ppu:PP1571 hypothetical protein; phage protein, HK97 gp10 family protein complement(1545663..1546196) Nitrosomonas eutropha C91 4272634 YP_747677.1 CDS Neut_1466 NC_008344.1 1546196 1546531 R PFAM: phage head-tail adaptor, putative; KEGG: eba:ebA5483 phage related protein (head-tail adaptor); phage head-tail adaptor complement(1546196..1546531) Nitrosomonas eutropha C91 4272635 YP_747678.1 CDS Neut_1467 NC_008344.1 1546533 1547090 R KEGG: bmb:BruAb1_0611 hypothetical protein; hypothetical protein complement(1546533..1547090) Nitrosomonas eutropha C91 4272636 YP_747679.1 CDS Neut_1468 NC_008344.1 1547147 1547446 R hypothetical protein complement(1547147..1547446) Nitrosomonas eutropha C91 4272637 YP_747680.1 CDS Neut_1469 NC_008344.1 1547456 1548682 R TIGRFAM: phage major capsid protein, HK97 family; PFAM: phage major capsid protein, HK97; KEGG: dvu:DVU1500 major capsid protein, HK97 family; phage major capsid protein, HK97 family protein complement(1547456..1548682) Nitrosomonas eutropha C91 4272638 YP_747681.1 CDS Neut_1470 NC_008344.1 1548764 1549450 R PFAM: peptidase S14, ClpP; KEGG: dvu:DVU1501 ClpP protease family protein; peptidase S14, ClpP complement(1548764..1549450) Nitrosomonas eutropha C91 4272533 YP_747682.1 CDS Neut_1471 NC_008344.1 1549461 1550753 R TIGRFAM: phage portal protein, HK97 family; PFAM: phage portal protein; KEGG: ppr:PBPRB1288 hypothetical phage portal protein; phage portal protein, HK97 family protein complement(1549461..1550753) Nitrosomonas eutropha C91 4272534 YP_747683.1 CDS Neut_1472 NC_008344.1 1550750 1552423 R PFAM: phage Terminase; KEGG: ppu:PP3881 phage terminase, large subunit, putative; phage terminase complement(1550750..1552423) Nitrosomonas eutropha C91 4272535 YP_747684.1 CDS Neut_1473 NC_008344.1 1552428 1552892 R TIGRFAM: phage terminase, small subunit, putative, P27 family; KEGG: ppu:PP3882 phage terminase, small subunit, putative; phage terminase, small subunit , P27 family protein complement(1552428..1552892) Nitrosomonas eutropha C91 4272536 YP_747685.1 CDS Neut_1474 NC_008344.1 1553024 1553428 R PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: ppu:PP3883 phage holin, putative; HNH endonuclease complement(1553024..1553428) Nitrosomonas eutropha C91 4272537 YP_747686.1 CDS Neut_1475 NC_008344.1 1553434 1553712 R hypothetical protein complement(1553434..1553712) Nitrosomonas eutropha C91 4272538 YP_747687.1 CDS Neut_1476 NC_008344.1 1553746 1553985 D hypothetical protein 1553746..1553985 Nitrosomonas eutropha C91 4272539 YP_747688.1 CDS Neut_1477 NC_008344.1 1554170 1554409 R hypothetical protein complement(1554170..1554409) Nitrosomonas eutropha C91 4272540 YP_747689.1 CDS Neut_1478 NC_008344.1 1554718 1555944 R PFAM: virulence-associated E family protein; KEGG: pfl:PFL_1989 DNA primase domain protein; virulence-associated E family protein complement(1554718..1555944) Nitrosomonas eutropha C91 4272541 YP_747690.1 CDS Neut_1480 NC_008344.1 1557117 1557434 D PFAM: protein of unknown function DUF891; KEGG: eba:ebA3772 hypothetical protein; hypothetical protein 1557117..1557434 Nitrosomonas eutropha C91 4272543 YP_747691.1 CDS Neut_1481 NC_008344.1 1557441 1557719 D SMART: helix-turn-helix domain protein; KEGG: neu:NE1372 helix-turn-helix motif; XRE family transcriptional regulator protein 1557441..1557719 Nitrosomonas eutropha C91 4272544 YP_747692.1 CDS Neut_1482 NC_008344.1 1557841 1558146 R KEGG: par:Psyc_0991 hypothetical protein; hypothetical protein complement(1557841..1558146) Nitrosomonas eutropha C91 4272545 YP_747693.1 CDS Neut_1483 NC_008344.1 1558143 1558394 R hypothetical protein complement(1558143..1558394) Nitrosomonas eutropha C91 4272546 YP_747694.1 CDS Neut_1484 NC_008344.1 1558451 1559485 D PFAM: peptidase S24, S26A and S26B; KEGG: ppu:PP1549 transcriptional regulator, Cro/CI family; phage repressor 1558451..1559485 Nitrosomonas eutropha C91 4272547 YP_747695.1 CDS Neut_1485 NC_008344.1 1559565 1560542 D KEGG: msu:MS1436 SppA protein; SppA protein 1559565..1560542 Nitrosomonas eutropha C91 4272548 YP_747696.1 CDS Neut_1486 NC_008344.1 1560736 1561140 D hypothetical protein 1560736..1561140 Nitrosomonas eutropha C91 4272549 YP_747697.1 CDS Neut_1487 NC_008344.1 1561137 1561685 D KEGG: bps:BPSL0176 putative phage-encoded membrane protein; hypothetical protein 1561137..1561685 Nitrosomonas eutropha C91 4273839 YP_747698.1 CDS Neut_1488 NC_008344.1 1561690 1562100 D hypothetical protein 1561690..1562100 Nitrosomonas eutropha C91 4273840 YP_747699.1 CDS Neut_1489 NC_008344.1 1562561 1562806 R hypothetical protein complement(1562561..1562806) Nitrosomonas eutropha C91 4273841 YP_747700.1 CDS Neut_1490 NC_008344.1 1563145 1563501 D PFAM: 17 kDa surface antigen; KEGG: cvi:CV0272 hypothetical protein; 17 kDa surface antigen 1563145..1563501 Nitrosomonas eutropha C91 4273842 YP_747701.1 CDS Neut_1491 NC_008344.1 1563942 1564436 D PFAM: nuclease (SNase domain protein); KEGG: noc:Noc_1464 micrococcal nuclease (SNase-like); nuclease 1563942..1564436 Nitrosomonas eutropha C91 4273843 YP_747702.1 CDS Neut_1492 NC_008344.1 1565059 1565958 R KEGG: vvy:VV1787 hypothetical protein; hypothetical protein complement(1565059..1565958) Nitrosomonas eutropha C91 4273844 YP_747703.1 CDS Neut_1493 NC_008344.1 1566498 1566782 D hypothetical protein 1566498..1566782 Nitrosomonas eutropha C91 4273845 YP_747704.1 CDS Neut_1494 NC_008344.1 1566779 1567261 D hypothetical protein 1566779..1567261 Nitrosomonas eutropha C91 4273846 YP_747705.1 CDS Neut_1495 NC_008344.1 1567276 1567638 D hypothetical protein 1567276..1567638 Nitrosomonas eutropha C91 4273847 YP_747706.1 CDS Neut_1496 NC_008344.1 1567648 1568031 D hypothetical protein 1567648..1568031 Nitrosomonas eutropha C91 4273848 YP_747707.1 CDS Neut_1497 NC_008344.1 1568227 1568727 D KEGG: dge:Dgeo_0927 type III restriction system methylase; hypothetical protein 1568227..1568727 Nitrosomonas eutropha C91 4273849 YP_747708.1 CDS Neut_1498 NC_008344.1 1568730 1569755 D PFAM: phage integrase family protein; KEGG: psb:Psyr_2846 phage integrase:phage integrase, N-terminal SAM-like; phage integrase family protein 1568730..1569755 Nitrosomonas eutropha C91 4273850 YP_747709.1 CDS Neut_1499 NC_008344.1 1570067 1570378 D catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 1570067..1570378 Nitrosomonas eutropha C91 4273852 YP_747710.1 CDS Neut_1500 NC_008344.1 1570368 1571261 D PFAM: Polyprenyl synthetase; KEGG: neu:NE1160 polyprenyl synthetase; polyprenyl synthetase 1570368..1571261 Nitrosomonas eutropha C91 4273853 YP_747711.1 CDS Neut_1501 NC_008344.1 1571324 1573168 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 1571324..1573168 Nitrosomonas eutropha C91 4273854 YP_747712.1 CDS Neut_1502 NC_008344.1 1573284 1574087 D similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis; GTP cyclohydrolase 1573284..1574087 Nitrosomonas eutropha C91 4273855 YP_747713.1 CDS Neut_1503 NC_008344.1 1574254 1574874 D PFAM: Uncharacterized protein UPF0114; KEGG: neu:NE1164 hypothetical protein; hypothetical protein 1574254..1574874 Nitrosomonas eutropha C91 4274356 YP_747714.1 CDS Neut_1504 NC_008344.1 1574903 1575643 R Involved in pteridine salvage and antifolate resistance; pteridine reductase complement(1574903..1575643) Nitrosomonas eutropha C91 4274357 YP_747715.1 CDS Neut_1505 NC_008344.1 1575716 1576891 D PFAM: protein of unknown function DUF185; KEGG: neu:NE1166 DUF185; hypothetical protein 1575716..1576891 Nitrosomonas eutropha C91 4274358 YP_747716.1 CDS Neut_1506 NC_008344.1 1576888 1577631 R PFAM: purine and other phosphorylases, family 1; KEGG: neu:NE1167 purine and other phosphorylase, family 1; purine phosphorylase family protein 1 complement(1576888..1577631) Nitrosomonas eutropha C91 4274359 YP_747717.1 CDS Neut_1507 NC_008344.1 1577628 1579640 R KEGG: neu:NE1168 prenyltransferase and squalene oxidase repeats; TIGRFAM: squalene/oxidosqualene cyclases; squalene-hopene cyclase; PFAM: Prenyltransferase/squalene oxidase; squalene-hopene cyclase complement(1577628..1579640) Nitrosomonas eutropha C91 4274360 YP_747718.1 CDS Neut_1508 NC_008344.1 1579775 1580623 R PFAM: VacJ family lipoprotein; KEGG: neu:NE1169 possible lipoprotein precursor (VacJ) transmembrane; VacJ family lipoprotein complement(1579775..1580623) Nitrosomonas eutropha C91 4274361 YP_747719.1 CDS Neut_1509 NC_008344.1 1580780 1581388 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: neu:NE1171 MotA/TolQ/ExbB proton channel family; MotA/TolQ/ExbB proton channel complement(1580780..1581388) Nitrosomonas eutropha C91 4274362 YP_747720.1 CDS xseA NC_008344.1 1581688 1583034 D bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 1581688..1583034 Nitrosomonas eutropha C91 4274363 YP_747721.1 CDS Neut_1511 NC_008344.1 1583099 1583479 D PFAM: protein of unknown function DUF423; KEGG: neu:NE1173 hypothetical protein; hypothetical protein 1583099..1583479 Nitrosomonas eutropha C91 4274364 YP_747722.1 CDS Neut_1512 NC_008344.1 1583540 1584724 D PFAM: putative RNA methylase; KEGG: neu:NE1174 uncharacterized protein family UPF0020; RNA methylase 1583540..1584724 Nitrosomonas eutropha C91 4274365 YP_747723.1 CDS Neut_1513 NC_008344.1 1584734 1585222 D PFAM: Disulphide bond formation protein DsbB; KEGG: neu:NE1175 disulfide bond formation protein DsbB; disulfide bond formation protein DsbB 1584734..1585222 Nitrosomonas eutropha C91 4274366 YP_747724.1 CDS Neut_1514 NC_008344.1 1585499 1585894 D PFAM: Endoribonuclease L-PSP; KEGG: nmu:Nmul_A2263 endoribonuclease L-PSP; endoribonuclease L-PSP 1585499..1585894 Nitrosomonas eutropha C91 4274367 YP_747725.1 CDS Neut_1515 NC_008344.1 1586061 1586408 R PFAM: protein of unknown function DUF488; KEGG: neu:NE1403 putative uroporphyrin-III C-methyltransferase; hypothetical protein complement(1586061..1586408) Nitrosomonas eutropha C91 4274368 YP_747726.1 CDS Neut_1516 NC_008344.1 1586463 1587137 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: neu:NE1404 ABC transporter, ATP-binding protein; ABC transporter-like protein 1586463..1587137 Nitrosomonas eutropha C91 4274369 YP_747727.1 CDS Neut_1517 NC_008344.1 1587134 1589683 D PFAM: protein of unknown function DUF214; KEGG: neu:NE1405 DUF214; hypothetical protein 1587134..1589683 Nitrosomonas eutropha C91 4274370 YP_747728.1 CDS Neut_1518 NC_008344.1 1589683 1590753 D KEGG: neu:NE1406 putative AttH; protein AttH 1589683..1590753 Nitrosomonas eutropha C91 4274371 YP_747729.1 CDS Neut_1519 NC_008344.1 1590833 1591075 D PFAM: SirA family protein; KEGG: neu:NE1407 hypothetical protein; SirA family protein 1590833..1591075 Nitrosomonas eutropha C91 4274372 YP_747730.1 CDS Neut_1520 NC_008344.1 1591567 1592391 D PFAM: Ammonia monooxygenase/methane monooxygenase, subunit C; KEGG: neu:NE1411 ammonia monooxygenase 3 subunit C; ammonia monooxygenase/methane monooxygenase subunit C 1591567..1592391 Nitrosomonas eutropha C91 4273393 YP_747731.1 CDS Neut_1521 NC_008344.1 1592716 1593645 R PFAM: Di-haem cytochrome c peroxidase; KEGG: aae:aq_136 cytochrome c peroxidase; cytochrome-c peroxidase complement(1592716..1593645) Nitrosomonas eutropha C91 4273394 YP_747732.1 CDS Neut_1522 NC_008344.1 1593821 1594036 D KEGG: hch:HCH_02355 transposase and inactivated derivatives; transposase and inactivated derivatives 1593821..1594036 Nitrosomonas eutropha C91 4273395 YP_747733.1 CDS Neut_1524 NC_008344.1 1594728 1595675 D PFAM: Integrase, catalytic region; KEGG: nwi:Nwi_2917 integrase, catalytic region; integrase catalytic subunit 1594728..1595675 Nitrosomonas eutropha C91 4273397 YP_747734.1 CDS ispD NC_008344.1 1595719 1596420 R 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(1595719..1596420) Nitrosomonas eutropha C91 4273398 YP_747735.1 CDS Neut_1526 NC_008344.1 1596488 1596928 D PFAM: CBS domain containing protein; KEGG: neu:NE2398 CBS domain; signal-transduction protein 1596488..1596928 Nitrosomonas eutropha C91 4273399 YP_747736.1 CDS Neut_1527 NC_008344.1 1596983 1597903 R PFAM: protein of unknown function DUF214; KEGG: neu:NE1413 DUF214; hypothetical protein complement(1596983..1597903) Nitrosomonas eutropha C91 4273400 YP_747737.1 CDS Neut_1528 NC_008344.1 1597900 1598562 R KEGG: neu:NE1414 uncharacterized ABC-type transport system ATPase component/cell division protein; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; cell division ATP-binding protein FtsE complement(1597900..1598562) Nitrosomonas eutropha C91 4273401 YP_747738.1 CDS Neut_1529 NC_008344.1 1598589 1599626 R KEGG: neu:NE1415 signal recognition particle GTPase, FtsY protein; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; SMART: AAA ATPase; signal recognition particle-docking protein FtsY complement(1598589..1599626) Nitrosomonas eutropha C91 4273402 YP_747739.1 CDS Neut_1530 NC_008344.1 1599693 1601084 D PFAM: peptidase M16 domain protein; KEGG: neu:NE1416 insulinase family (peptidase family M16); peptidase M16 domain-containing protein 1599693..1601084 Nitrosomonas eutropha C91 4273403 YP_747740.1 CDS Neut_1531 NC_008344.1 1601211 1602296 D KEGG: neu:NE1417 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase 1601211..1602296 Nitrosomonas eutropha C91 4273404 YP_747741.1 CDS Neut_1532 NC_008344.1 1602325 1603119 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: neu:NE1418 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase complement(1602325..1603119) Nitrosomonas eutropha C91 4273405 YP_747742.1 CDS Neut_1533 NC_008344.1 1603293 1603595 R unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein complement(1603293..1603595) Nitrosomonas eutropha C91 4273406 YP_747743.1 CDS Neut_1534 NC_008344.1 1603708 1604862 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: neu:NE1420 probable rubredoxin reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(1603708..1604862) Nitrosomonas eutropha C91 4273407 YP_747744.1 CDS Neut_1535 NC_008344.1 1605179 1606057 D putative metalloprotease; heat shock protein HtpX 1605179..1606057 Nitrosomonas eutropha C91 4273408 YP_747745.1 CDS Neut_1536 NC_008344.1 1606129 1606908 R PFAM: VacJ family lipoprotein; KEGG: neu:NE1422 putative lipoprotein precursor (vacJ) transmembrane; VacJ family lipoprotein complement(1606129..1606908) Nitrosomonas eutropha C91 4273409 YP_747746.1 CDS Neut_1537 NC_008344.1 1607057 1608340 R Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase complement(1607057..1608340) Nitrosomonas eutropha C91 4273410 YP_747747.1 CDS thiE NC_008344.1 1608377 1609015 R Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase complement(1608377..1609015) Nitrosomonas eutropha C91 4273619 YP_747748.1 CDS Neut_1539 NC_008344.1 1609008 1609850 R PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: neu:NE1425 putative phosphomethylpyrimidine kinase; phosphomethylpyrimidine kinase complement(1609008..1609850) Nitrosomonas eutropha C91 4273620 YP_747749.1 CDS Neut_1540 NC_008344.1 1609903 1610091 D PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: neu:NE1426 rubredoxin:rubredoxin-type Fe(Cys)4 protein; rubredoxin-type Fe(Cys)4 protein 1609903..1610091 Nitrosomonas eutropha C91 4273621 YP_747750.1 CDS Neut_1541 NC_008344.1 1610091 1610480 D KEGG: neu:NE1427 lactoylglutathione lyase; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase 1610091..1610480 Nitrosomonas eutropha C91 4273622 YP_747751.1 CDS Neut_1542 NC_008344.1 1610669 1611034 D essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 1610669..1611034 Nitrosomonas eutropha C91 4273623 YP_747752.1 CDS anmK NC_008344.1 1611043 1612134 R catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase complement(1611043..1612134) Nitrosomonas eutropha C91 4273624 YP_747753.1 CDS Neut_1544 NC_008344.1 1612170 1613501 R PFAM: peptidase M23B; KEGG: neu:NE1430 peptidase family M23/M37; peptidase M23B complement(1612170..1613501) Nitrosomonas eutropha C91 4273625 YP_747754.1 CDS Neut_1545 NC_008344.1 1613594 1614814 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 1613594..1614814 Nitrosomonas eutropha C91 4273626 YP_747755.1 CDS Neut_1546 NC_008344.1 1615081 1615917 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: neu:NE1567 short-chain dehydrogenase/reductase (SDR) superfamily; short-chain dehydrogenase/reductase SDR complement(1615081..1615917) Nitrosomonas eutropha C91 4273627 YP_747756.1 CDS Neut_1547 NC_008344.1 1615914 1616900 R PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: neu:NE1568 possible oxidoreductase; oxidoreductase domain-containing protein complement(1615914..1616900) Nitrosomonas eutropha C91 4273628 YP_747757.1 CDS Neut_1548 NC_008344.1 1616897 1617613 R PFAM: acylneuraminate cytidylyltransferase; KEGG: neu:NE1569 cytidylyltransferase (CMP-NeuAc synthetase); N-acylneuraminate cytidylyltransferase complement(1616897..1617613) Nitrosomonas eutropha C91 4273629 YP_747758.1 CDS Neut_1549 NC_008344.1 1617931 1620180 D PFAM: CBS domain containing protein; Xylose isomerase domain protein TIM barrel; N-acetylneuraminic acid synthase, N-terminal domain; KEGG: neu:NE1570 type III antifreeze protein:CBS domain:NeuB family; N-acylneuraminate-9-phosphate synthase 1617931..1620180 Nitrosomonas eutropha C91 4273630 YP_747759.1 CDS Neut_1550 NC_008344.1 1620322 1621725 D KEGG: neu:NE1571 hypothetical protein; hypothetical protein 1620322..1621725 Nitrosomonas eutropha C91 4273631 YP_747760.1 CDS nrdR NC_008344.1 1621954 1622436 R TIGRFAM: Ribonucleotide reductase regulator NrdR-like; PFAM: ATP-cone domain protein; KEGG: neu:NE1432 DUF193; transcriptional regulator NrdR complement(1621954..1622436) Nitrosomonas eutropha C91 4273632 YP_747761.1 CDS glyA NC_008344.1 1622513 1623763 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(1622513..1623763) Nitrosomonas eutropha C91 4273633 YP_747762.1 CDS Neut_1553 NC_008344.1 1623957 1624697 D PFAM: TENA/THI-4 domain protein; KEGG: neu:NE1434 putative coenzyme PQQ synthesis protein C, putative; TENA/THI-4 domain-containing protein 1623957..1624697 Nitrosomonas eutropha C91 4273634 YP_747763.1 CDS Neut_1554 NC_008344.1 1624799 1625734 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: neu:NE1435 bacterial regulatory protein, LysR family; LysR family transcriptional regulator complement(1624799..1625734) Nitrosomonas eutropha C91 4273635 YP_747764.1 CDS Neut_1555 NC_008344.1 1625801 1628110 D catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 1625801..1628110 Nitrosomonas eutropha C91 4272448 YP_747765.1 CDS Neut_1556 NC_008344.1 1628284 1629537 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(1628284..1629537) Nitrosomonas eutropha C91 4272449 YP_747766.1 CDS Neut_1557 NC_008344.1 1629625 1630014 D TIGRFAM: putative endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: neu:NE1851 YER057c/YjgF/UK114 family; endoribonuclease L-PSP 1629625..1630014 Nitrosomonas eutropha C91 4272450 YP_747767.1 CDS Neut_1558 NC_008344.1 1630047 1632104 D catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 1630047..1632104 Nitrosomonas eutropha C91 4272451 YP_747768.1 CDS Neut_1559 NC_008344.1 1632089 1632955 R PFAM: Uncharacterised P-loop ATPase protein UPF0042; KEGG: neu:NE1849 hypothetical protein; hypothetical protein complement(1632089..1632955) Nitrosomonas eutropha C91 4272452 YP_747769.1 CDS greB NC_008344.1 1633040 1633588 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreB 1633040..1633588 Nitrosomonas eutropha C91 4272453 YP_747770.1 CDS Neut_1561 NC_008344.1 1633780 1635084 D PFAM: outer membrane efflux protein; KEGG: dar:Daro_1176 outer membrane efflux protein; outer membrane efflux protein 1633780..1635084 Nitrosomonas eutropha C91 4272454 YP_747771.1 CDS Neut_1562 NC_008344.1 1635081 1636250 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: neu:NE0346 possible cation transporter transmembrane protein; RND family efflux transporter MFP subunit 1635081..1636250 Nitrosomonas eutropha C91 4272455 YP_747772.1 CDS Neut_1563 NC_008344.1 1636252 1639377 D TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: neu:NE0345 acriflavin resistance protein:heavy metal efflux pump CzcA; CzcA family heavy metal efflux pump 1636252..1639377 Nitrosomonas eutropha C91 4272456 YP_747773.1 CDS Neut_1564 NC_008344.1 1639420 1640091 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: neu:NE0344 possible response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding; two component transcriptional regulator, winged helix family protein 1639420..1640091 Nitrosomonas eutropha C91 4272457 YP_747774.1 CDS Neut_1565 NC_008344.1 1640088 1641473 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Two-component sensor kinase N-terminal domain protein; KEGG: neu:NE0343 sensory transduction histidine kinases; sensor signal transduction histidine kinase 1640088..1641473 Nitrosomonas eutropha C91 4272458 YP_747775.1 CDS Neut_1566 NC_008344.1 1641969 1642670 D PFAM: protein of unknown function DUF484; KEGG: neu:NE0339 hypothetical protein; hypothetical protein 1641969..1642670 Nitrosomonas eutropha C91 4272459 YP_747776.1 CDS Neut_1567 NC_008344.1 1642654 1643619 D TIGRFAM: tyrosine recombinase XerC; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: neu:NE0338 phage integrase:phage integrase N-terminal SAM-like domain; tyrosine recombinase XerC 1642654..1643619 Nitrosomonas eutropha C91 4272460 YP_747777.1 CDS Neut_1568 NC_008344.1 1643666 1644568 R PFAM: Prephenate dehydrogenase; NADP oxidoreductase, coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: neu:NE0337 prephenate dehydrogenase; prephenate dehydrogenase complement(1643666..1644568) Nitrosomonas eutropha C91 4272461 YP_747778.1 CDS Neut_1569 NC_008344.1 1644596 1645714 R catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase complement(1644596..1645714) Nitrosomonas eutropha C91 4272462 YP_747779.1 CDS Neut_1570 NC_008344.1 1645736 1646794 R TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: neu:NE0335 prephenate dehydratase (PDT):chorismate mutase:ACT domain; chorismate mutase complement(1645736..1646794) Nitrosomonas eutropha C91 4272463 YP_747780.1 CDS Neut_1571 NC_008344.1 1646834 1648051 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: neu:NE0334 D-isomer specific 2-hydroxyacid dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase complement(1646834..1648051) Nitrosomonas eutropha C91 4272464 YP_747781.1 CDS Neut_1572 NC_008344.1 1648044 1649150 R catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase complement(1648044..1649150) Nitrosomonas eutropha C91 4272465 YP_747782.1 CDS Neut_1573 NC_008344.1 1649168 1651714 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A complement(1649168..1651714) Nitrosomonas eutropha C91 4272041 YP_747783.1 CDS Neut_1574 NC_008344.1 1651784 1652365 R PFAM: toluene tolerance family protein; KEGG: neu:NE0331 putative periplasmic transport protein; toluene tolerance family protein complement(1651784..1652365) Nitrosomonas eutropha C91 4272042 YP_747784.1 CDS Neut_1575 NC_008344.1 1652394 1653524 R PFAM: glycosyl transferase, family 2; KEGG: neu:NE0330 glycosyl transferase, family 2; glycosyl transferase complement(1652394..1653524) Nitrosomonas eutropha C91 4272043 YP_747785.1 CDS Neut_1576 NC_008344.1 1653573 1654736 R PFAM: Radical SAM domain protein; KEGG: neu:NE0329 MoaA / NifB / PqqE family; radical SAM domain-containing protein complement(1653573..1654736) Nitrosomonas eutropha C91 4272044 YP_747786.1 CDS Neut_1577 NC_008344.1 1655283 1657301 D catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 1655283..1657301 Nitrosomonas eutropha C91 4272046 YP_747787.1 CDS Neut_1578 NC_008344.1 1657365 1658372 D KEGG: neu:NE0327 glyceraldehyde 3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I 1657365..1658372 Nitrosomonas eutropha C91 4272047 YP_747788.1 CDS pgk NC_008344.1 1658691 1659869 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 1658691..1659869 Nitrosomonas eutropha C91 4272048 YP_747789.1 CDS Neut_1580 NC_008344.1 1659904 1661394 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 1659904..1661394 Nitrosomonas eutropha C91 4272049 YP_747790.1 CDS Neut_1581 NC_008344.1 1661502 1662566 D class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase 1661502..1662566 Nitrosomonas eutropha C91 4272050 YP_747791.1 CDS Neut_1582 NC_008344.1 1663224 1664882 D PFAM: cytochrome c oxidase, subunit I; KEGG: rfr:Rfer_4127 cytochrome c oxidase, subunit I; cytochrome c oxidase subunit I 1663224..1664882 Nitrosomonas eutropha C91 4272051 YP_747792.1 CDS Neut_1583 NC_008344.1 1664872 1665480 D PFAM: cytochrome C oxidase, mono-heme subunit/FixO; KEGG: pol:Bpro_1266 cytochrome c oxidase, mono-heme subunit/FixO; cytochrome C oxidase, mono-heme subunit/FixO 1664872..1665480 Nitrosomonas eutropha C91 4272052 YP_747793.1 CDS Neut_1584 NC_008344.1 1665545 1666156 D PFAM: cytochrome c, class I; KEGG: rfr:Rfer_4125 cytochrome c, class I; cytochrome c, class I 1665545..1666156 Nitrosomonas eutropha C91 4272053 YP_747794.1 CDS Neut_1585 NC_008344.1 1666197 1666847 D KEGG: rfr:Rfer_4124 uncharacterized protein SCO1/SenC/PrrC,involved in biogenesis of respiratory and photosynthetic systems; hypothetical protein 1666197..1666847 Nitrosomonas eutropha C91 4272054 YP_747795.1 CDS Neut_1586 NC_008344.1 1666943 1667434 D KEGG: rfr:Rfer_4123 hypothetical protein; hypothetical protein 1666943..1667434 Nitrosomonas eutropha C91 4272055 YP_747796.1 CDS Neut_1587 NC_008344.1 1667537 1668490 R TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; KEGG: neu:NE2065 putative rare lipoprotein A; rare lipoprotein A complement(1667537..1668490) Nitrosomonas eutropha C91 4272056 YP_747797.1 CDS Neut_1588 NC_008344.1 1668495 1669604 R TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: neu:NE2066 cell cycle proteins; rod shape-determining protein RodA complement(1668495..1669604) Nitrosomonas eutropha C91 4272346 YP_747798.1 CDS Neut_1589 NC_008344.1 1669627 1671504 R PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: neu:NE2067 penicillin binding protein transpeptidase domain; peptidoglycan glycosyltransferase complement(1669627..1671504) Nitrosomonas eutropha C91 4272347 YP_747799.1 CDS Neut_1590 NC_008344.1 1671501 1672052 R PFAM: Rod shape-determining protein MreD; KEGG: neu:NE2068 possible rod shape-determining MreD transmembrane protein; rod shape-determining protein MreD complement(1671501..1672052) Nitrosomonas eutropha C91 4272348 YP_747800.1 CDS Neut_1591 NC_008344.1 1672024 1672914 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(1672024..1672914) Nitrosomonas eutropha C91 4272349 YP_747801.1 CDS Neut_1592 NC_008344.1 1673277 1674338 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(1673277..1674338) Nitrosomonas eutropha C91 4272350 YP_747802.2 CDS gatC NC_008344.1 1674501 1674788 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 1674501..1674788 Nitrosomonas eutropha C91 4272351 YP_747803.1 CDS gatA NC_008344.1 1674853 1676313 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 1674853..1676313 Nitrosomonas eutropha C91 4272352 YP_747804.1 CDS gatB NC_008344.1 1676378 1677814 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 1676378..1677814 Nitrosomonas eutropha C91 4272353 YP_747805.1 CDS Neut_1596 NC_008344.1 1678493 1678930 R PFAM: heat shock protein Hsp20; KEGG: neu:NE2074 heat shock HSP20 (alpha crystallin) proteins family; heat shock protein Hsp20 complement(1678493..1678930) Nitrosomonas eutropha C91 4272354 YP_747806.1 CDS Neut_1597 NC_008344.1 1679082 1679300 R KEGG: neu:NE2075 diguanylate cyclase/phosphodiesterase domain 2 (EAL); hypothetical protein complement(1679082..1679300) Nitrosomonas eutropha C91 4272355 YP_747807.1 CDS Neut_1599 NC_008344.1 1679636 1679935 D KEGG: xoo:XOO0125 putative transposase; hypothetical protein 1679636..1679935 Nitrosomonas eutropha C91 4272357 YP_747808.1 CDS Neut_1600 NC_008344.1 1680550 1680777 R KEGG: lpn:lpg0488 transposase (IS4 family, ISSod6); hypothetical protein complement(1680550..1680777) Nitrosomonas eutropha C91 4272359 YP_747809.1 CDS Neut_1601 NC_008344.1 1681519 1683687 D KEGG: neu:NE0368 bifunctional enzyme (p)ppGpp synthetase II and guanosine-3',5'-bisdiphosphate 3'-pyro; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region; (p)ppGpp synthetase I SpoT/RelA 1681519..1683687 Nitrosomonas eutropha C91 4272360 YP_747810.1 CDS Neut_1602 NC_008344.1 1683706 1684389 D KEGG: neu:NE0367 hypothetical protein; hypothetical protein 1683706..1684389 Nitrosomonas eutropha C91 4272361 YP_747811.1 CDS Neut_1603 NC_008344.1 1684399 1685052 R PFAM: DSBA oxidoreductase; KEGG: neu:NE0366 thioredoxin:DSBA oxidoreductase; DSBA oxidoreductase complement(1684399..1685052) Nitrosomonas eutropha C91 4272362 YP_747812.1 CDS Neut_1604 NC_008344.1 1685168 1685833 R PFAM: Sporulation domain protein; KEGG: neu:NE0365 hypothetical protein; sporulation domain-containing protein complement(1685168..1685833) Nitrosomonas eutropha C91 4272092 YP_747813.1 CDS argS NC_008344.1 1685857 1687617 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(1685857..1687617) Nitrosomonas eutropha C91 4272093 YP_747814.1 CDS Neut_1606 NC_008344.1 1687866 1688525 D KEGG: neu:NE0363 hypothetical protein; hypothetical protein 1687866..1688525 Nitrosomonas eutropha C91 4272094 YP_747815.1 CDS Neut_1607 NC_008344.1 1688663 1689550 D catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 1688663..1689550 Nitrosomonas eutropha C91 4272095 YP_747816.1 CDS aceE NC_008344.1 1689592 1692252 D E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 1689592..1692252 Nitrosomonas eutropha C91 4272096 YP_747817.1 CDS Neut_1609 NC_008344.1 1692325 1693674 D PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: neu:NE0360 dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (e2) protein; branched-chain alpha-keto acid dehydrogenase subunit E2 1692325..1693674 Nitrosomonas eutropha C91 4272097 YP_747818.1 CDS Neut_1610 NC_008344.1 1693728 1694423 D KEGG: neu:NE0359 cytidylyltransferase; TIGRFAM: cytidyltransferase-related domain; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; nicotinate (nicotinamide) nucleotide adenylyltransferase 1693728..1694423 Nitrosomonas eutropha C91 4272098 YP_747819.1 CDS Neut_1611 NC_008344.1 1694420 1694785 D TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: neu:NE0358 domain of unknown function DUF143:iojap-related protein; iojap family protein 1694420..1694785 Nitrosomonas eutropha C91 4272099 YP_747820.1 CDS Neut_1612 NC_008344.1 1694877 1695344 D SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 1694877..1695344 Nitrosomonas eutropha C91 4272100 YP_747821.1 CDS Neut_1613 NC_008344.1 1695426 1696049 D TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: neu:NE0356 Maf-like protein; maf protein 1695426..1696049 Nitrosomonas eutropha C91 4272101 YP_747822.1 CDS Neut_1614 NC_008344.1 1696082 1697533 D TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: neu:NE0355 S1 RNA binding domain:ribonuclease E and G; ribonuclease, Rne/Rng family protein 1696082..1697533 Nitrosomonas eutropha C91 4272102 YP_747823.1 CDS Neut_1615 NC_008344.1 1697769 1698491 D TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: neu:NE0354 possible TonB protein; TonB family protein 1697769..1698491 Nitrosomonas eutropha C91 4272103 YP_747824.1 CDS Neut_1616 NC_008344.1 1698495 1699292 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: neu:NE0353 MotA/TolQ/ExbB proton channel family; MotA/TolQ/ExbB proton channel 1698495..1699292 Nitrosomonas eutropha C91 4272104 YP_747825.1 CDS Neut_1617 NC_008344.1 1699292 1699717 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: neu:NE0352 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 1699292..1699717 Nitrosomonas eutropha C91 4272105 YP_747826.1 CDS Neut_1618 NC_008344.1 1699787 1700569 R TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; KEGG: neu:NE0351 putative tRNA/rRNA methyltransferase; RNA methyltransferase complement(1699787..1700569) Nitrosomonas eutropha C91 4272106 YP_747827.1 CDS Neut_1619 NC_008344.1 1700597 1702801 R KEGG: neu:NE0350 exoribonuclease RNAse R (VacB protein); TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases; ribonuclease R; PFAM: ribonuclease II; Cold-shock protein, DNA-binding; RNA binding S1 domain protein; Ribonuclease B, OB region N-terminal domain; SMART: Cold shock protein; ribonuclease R complement(1700597..1702801) Nitrosomonas eutropha C91 4272107 YP_747828.1 CDS Neut_1620 NC_008344.1 1703415 1704572 D PFAM: UMUC domain protein DNA-repair protein; KEGG: neu:NE1219 UMUC family (DNA-repair); DNA-directed DNA polymerase 1703415..1704572 Nitrosomonas eutropha C91 4272483 YP_747829.1 CDS Neut_1621 NC_008344.1 1704929 1706029 D PFAM: sigma-54 factor, interaction domain-containing protein; SMART: AAA ATPase; KEGG: gme:Gmet_0339 sigma54 specific transcriptional regulator with PAS sensor, fis family; sigma-54 factor interaction domain-containing protein 1704929..1706029 Nitrosomonas eutropha C91 4272484 YP_747830.1 CDS Neut_1622 NC_008344.1 1706315 1706911 R PFAM: amidohydrolase 2; KEGG: pab:PAB0058 hypothetical protein; amidohydrolase 2 complement(1706315..1706911) Nitrosomonas eutropha C91 4272485 YP_747831.1 CDS Neut_1623 NC_008344.1 1707163 1708458 R PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; N-acetylmuramoyl-L-alanine amidase complement(1707163..1708458) Nitrosomonas eutropha C91 4272486 YP_747832.1 CDS Neut_1624 NC_008344.1 1708911 1709759 D PFAM: Integrase, catalytic region; KEGG: pol:Bpro_5204 integrase, catalytic region; integrase catalytic subunit 1708911..1709759 Nitrosomonas eutropha C91 4272487 YP_747833.1 CDS Neut_1625 NC_008344.1 1709762 1710205 R hypothetical protein complement(1709762..1710205) Nitrosomonas eutropha C91 4272488 YP_747834.1 CDS Neut_1626 NC_008344.1 1710189 1710845 R hypothetical protein complement(1710189..1710845) Nitrosomonas eutropha C91 4272489 YP_747835.1 CDS Neut_1627 NC_008344.1 1711689 1712312 D KEGG: neu:NE1875 esterase/lipase/thioesterase family active site; esterase/lipase/thioesterase family protein 1711689..1712312 Nitrosomonas eutropha C91 4272490 YP_747836.1 CDS Neut_1628 NC_008344.1 1712523 1713320 R PFAM: carbonic anhydrase; KEGG: neu:NE0606 eukaryotic-type carbonic anhydrase; carbonate dehydratase complement(1712523..1713320) Nitrosomonas eutropha C91 4272491 YP_747837.1 CDS Neut_1629 NC_008344.1 1713350 1713592 R KEGG: neu:NE0605 hypothetical protein; hypothetical protein complement(1713350..1713592) Nitrosomonas eutropha C91 4272492 YP_747838.1 CDS Neut_1630 NC_008344.1 1714112 1715452 D PFAM: major facilitator superfamily MFS_1; KEGG: neu:NE0600 probable transmembrane protein; lysophospholipid transporter LplT 1714112..1715452 Nitrosomonas eutropha C91 4272493 YP_747839.1 CDS Neut_1631 NC_008344.1 1715543 1716379 R PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: neu:NE0775 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU complement(1715543..1716379) Nitrosomonas eutropha C91 4272494 YP_747840.1 CDS Neut_1632 NC_008344.1 1716877 1718295 R Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(1716877..1718295) Nitrosomonas eutropha C91 4272496 YP_747841.1 CDS Neut_1633 NC_008344.1 1718527 1719510 D catalyzes the oxidation of malate to oxaloacetate; malate dehydrogenase 1718527..1719510 Nitrosomonas eutropha C91 4272497 YP_747842.1 CDS Neut_1634 NC_008344.1 1719562 1720017 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: neu:NE0772 bacterioferritin comigratory protein; alkyl hydroperoxide reductase complement(1719562..1720017) Nitrosomonas eutropha C91 4272498 YP_747843.1 CDS Neut_1635 NC_008344.1 1720050 1721393 R PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: neu:NE0771 TPR repeat; hypothetical protein complement(1720050..1721393) Nitrosomonas eutropha C91 4273737 YP_747844.1 CDS Neut_1636 NC_008344.1 1721390 1721905 R PFAM: cytochrome C biogenesis protein; KEGG: neu:NE0770 putative cytochrome C-type biogenesis protein CcmH; cytochrome C biogenesis protein complement(1721390..1721905) Nitrosomonas eutropha C91 4273738 YP_747845.1 CDS Neut_1637 NC_008344.1 1721913 1722437 R TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: Redoxin domain protein; KEGG: neu:NE0769 periplasmic protein thiol:disulfide oxidoreductase DsbE; periplasmic protein thiol--disulfide oxidoreductase DsbE complement(1721913..1722437) Nitrosomonas eutropha C91 4273739 YP_747846.1 CDS Neut_1638 NC_008344.1 1722434 1724479 R TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: neu:NE0768 cytochrome c-type biogenesis protein (CcmF); cytochrome c-type biogenesis protein CcmF complement(1722434..1724479) Nitrosomonas eutropha C91 4273740 YP_747847.1 CDS Neut_1639 NC_008344.1 1724520 1724969 R CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE complement(1724520..1724969) Nitrosomonas eutropha C91 4273741 YP_747848.1 CDS Neut_1640 NC_008344.1 1724972 1725148 R KEGG: nmu:Nmul_A1211 hypothetical protein; hypothetical protein complement(1724972..1725148) Nitrosomonas eutropha C91 4273742 YP_747849.1 CDS Neut_1641 NC_008344.1 1725145 1725888 R TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: neu:NE0766 ABC transporter, permease domain, ccmC, heme exporter; heme exporter protein CcmC complement(1725145..1725888) Nitrosomonas eutropha C91 4273743 YP_747850.1 CDS Neut_1642 NC_008344.1 1725991 1726650 R TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: neu:NE0765 ABC transporter, permease domain, ccmB, heme exporter protein B; heme exporter protein CcmB complement(1725991..1726650) Nitrosomonas eutropha C91 4273744 YP_747851.1 CDS Neut_1643 NC_008344.1 1726657 1727271 R ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA complement(1726657..1727271) Nitrosomonas eutropha C91 4273745 YP_747852.1 CDS truB NC_008344.1 1727382 1728371 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(1727382..1728371) Nitrosomonas eutropha C91 4273746 YP_747853.1 CDS rbfA NC_008344.1 1728456 1728809 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(1728456..1728809) Nitrosomonas eutropha C91 4273747 YP_747854.1 CDS infB NC_008344.1 1728862 1731528 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(1728862..1731528) Nitrosomonas eutropha C91 4273748 YP_747855.1 CDS nusA NC_008344.1 1731647 1733119 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(1731647..1733119) Nitrosomonas eutropha C91 4273749 YP_747856.1 CDS Neut_1648 NC_008344.1 1733172 1733654 R in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein complement(1733172..1733654) Nitrosomonas eutropha C91 4273750 YP_747857.1 CDS Neut_1650 NC_008344.1 1734587 1735024 D KEGG: neu:NE0737 hypothetical protein; hypothetical protein 1734587..1735024 Nitrosomonas eutropha C91 4273752 YP_747858.1 CDS Neut_1651 NC_008344.1 1735098 1735424 R PFAM: cytochrome c, class I; KEGG: neu:NE0736 cytochrome c, class IC:cytochrome c, class I; cytochrome c, class I complement(1735098..1735424) Nitrosomonas eutropha C91 4273753 YP_747859.1 CDS Neut_1652 NC_008344.1 1735457 1735783 R KEGG: neu:NE0735 cytochrome c, class IC:cytochrome c, class I; cytochrome c, class IC:cytochrome c, class I complement(1735457..1735783) Nitrosomonas eutropha C91 4273805 YP_747860.1 CDS Neut_1653 NC_008344.1 1735896 1737842 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: neu:NE0734 ABC transporter ATP-binding protein; ABC transporter-like protein complement(1735896..1737842) Nitrosomonas eutropha C91 4273806 YP_747861.1 CDS Neut_1654 NC_008344.1 1738073 1739122 D TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein domain protein; KEGG: neu:NE0733 AIR synthase related protein:selenide water dikinase; selenide, water dikinase 1738073..1739122 Nitrosomonas eutropha C91 4273807 YP_747862.1 CDS Neut_1655 NC_008344.1 1739115 1740281 D catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 1739115..1740281 Nitrosomonas eutropha C91 4273808 YP_747863.1 CDS Neut_1656 NC_008344.1 1740630 1742198 R PFAM: FAD linked oxidase domain protein; KEGG: eba:ebA3165 probable p-cresol methylhydroxylase subunit; 4-cresol dehydrogenase complement(1740630..1742198) Nitrosomonas eutropha C91 4273809 YP_747864.1 CDS Neut_1657 NC_008344.1 1742195 1742920 R KEGG: noc:Noc_2407 hypothetical protein; hypothetical protein complement(1742195..1742920) Nitrosomonas eutropha C91 4273810 YP_747865.1 CDS Neut_1658 NC_008344.1 1742931 1743287 R KEGG: noc:Noc_2408 cytochrome c, class I; hypothetical protein complement(1742931..1743287) Nitrosomonas eutropha C91 4273811 YP_747866.1 CDS Neut_1659 NC_008344.1 1743551 1744588 R catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase complement(1743551..1744588) Nitrosomonas eutropha C91 4273812 YP_747867.1 CDS Neut_1660 NC_008344.1 1744686 1745582 R TIGRFAM: Protein of unknown function UPF0011; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: neu:NE0721 possible methyltransferases; hypothetical protein complement(1744686..1745582) Nitrosomonas eutropha C91 4273813 YP_747868.1 CDS Neut_1661 NC_008344.1 1745724 1747514 D PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: neu:NE0720 ABC transporter, fused permease and ATPase domains; ABC transporter-like protein 1745724..1747514 Nitrosomonas eutropha C91 4273814 YP_747869.1 CDS Neut_1662 NC_008344.1 1747620 1747970 D PFAM: protein of unknown function UPF0102; KEGG: neu:NE0711 hypothetical protein; hypothetical protein 1747620..1747970 Nitrosomonas eutropha C91 4273815 YP_747870.1 CDS Neut_1663 NC_008344.1 1748350 1749564 R PFAM: protein of unknown function DUF1207; KEGG: neu:NE1230 hypothetical protein; hypothetical protein complement(1748350..1749564) Nitrosomonas eutropha C91 4273816 YP_747871.1 CDS Neut_1664 NC_008344.1 1750387 1750644 D PFAM: transport-associated; KEGG: dar:Daro_2047 transport-associated; transport-associated 1750387..1750644 Nitrosomonas eutropha C91 4273817 YP_747872.1 CDS Neut_1665 NC_008344.1 1751161 1760118 D PFAM: putative carbohydrate binding; glycosyltransferase 36; glycosyltransferase 36 associated; KEGG: dar:Daro_2046 putative carbohydrate binding:glycosyltransferase 36:glycosyltransferase 36 associated; glycosyltransferase 1751161..1760118 Nitrosomonas eutropha C91 4273818 YP_747873.1 CDS Neut_1666 NC_008344.1 1760338 1760559 R KEGG: pgi:PG0461 ISPg7, transposase; ISPg7, transposase complement(1760338..1760559) Nitrosomonas eutropha C91 4273819 YP_747874.1 CDS Neut_1668 NC_008344.1 1762894 1764360 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: neu:NE2040 ATP-dependent RNA helicase RhlE; DEAD/DEAH box helicase complement(1762894..1764360) Nitrosomonas eutropha C91 4273821 YP_747875.1 CDS Neut_1669 NC_008344.1 1764519 1765316 R KEGG: neu:NE2041 hypothetical protein; hypothetical protein complement(1764519..1765316) Nitrosomonas eutropha C91 4273822 YP_747876.1 CDS Neut_1670 NC_008344.1 1765555 1766262 R KEGG: neu:NE2337 cytochrome c-554 precursor; cytochrome c-554 complement(1765555..1766262) Nitrosomonas eutropha C91 4273670 YP_747877.1 CDS Neut_1671 NC_008344.1 1766324 1767445 R KEGG: neu:NE2338 hypothetical protein; hypothetical protein complement(1766324..1767445) Nitrosomonas eutropha C91 4273671 YP_747878.1 CDS Neut_1672 NC_008344.1 1767442 1769154 R KEGG: neu:NE2339 hydroxylamine oxidoreductase; hydroxylamine oxidase complement(1767442..1769154) Nitrosomonas eutropha C91 4273672 YP_747879.1 CDS rpsT NC_008344.1 1769242 1769505 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(1769242..1769505) Nitrosomonas eutropha C91 4273673 YP_747880.1 CDS Neut_1674 NC_008344.1 1769810 1770088 R KEGG: mag:amb4024 transposase and inactivated derivative; transposase and inactivated derivative complement(1769810..1770088) Nitrosomonas eutropha C91 4273674 YP_747881.1 CDS Neut_1675 NC_008344.1 1770112 1770549 R KEGG: ret:RHE_PB00143 probable insertion sequence transposase protein; hypothetical protein complement(1770112..1770549) Nitrosomonas eutropha C91 4273675 YP_747882.1 CDS Neut_1676 NC_008344.1 1770877 1771104 R KEGG: neu:NE1497 hypothetical protein; hypothetical protein complement(1770877..1771104) Nitrosomonas eutropha C91 4273677 YP_747883.1 CDS Neut_1677 NC_008344.1 1771281 1771667 R PFAM: Invasion gene expression up-regulator, SirB; KEGG: neu:NE1499 hypothetical protein; invasion gene expression up-regulator, SirB complement(1771281..1771667) Nitrosomonas eutropha C91 4273678 YP_747884.1 CDS Neut_1678 NC_008344.1 1771729 1772073 R KEGG: neu:NE1501 hypothetical protein; hypothetical protein complement(1771729..1772073) Nitrosomonas eutropha C91 4273679 YP_747885.1 CDS Neut_1679 NC_008344.1 1772168 1773034 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: neu:NE1502 integral membrane protein, DUF6; hypothetical protein complement(1772168..1773034) Nitrosomonas eutropha C91 4273680 YP_747886.1 CDS Neut_1680 NC_008344.1 1773055 1774161 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: neu:NE1503 Rieske iron-sulfur protein 2Fe-2S subunit; Rieske (2Fe-2S) domain-containing protein complement(1773055..1774161) Nitrosomonas eutropha C91 4273681 YP_747887.1 CDS Neut_1681 NC_008344.1 1774531 1775916 D KEGG: neu:NE1504 hypothetical protein; hypothetical protein 1774531..1775916 Nitrosomonas eutropha C91 4273682 YP_747888.1 CDS Neut_1682 NC_008344.1 1775993 1778194 D TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; KEGG: neu:NE1505 probable primosomal protein N' (replication factor Y); primosomal protein N' 1775993..1778194 Nitrosomonas eutropha C91 4273683 YP_747889.1 CDS Neut_1683 NC_008344.1 1778263 1778709 R PFAM: UspA domain protein; KEGG: neu:NE1506 universal stress protein (Usp); UspA domain-containing protein complement(1778263..1778709) Nitrosomonas eutropha C91 4273684 YP_747890.1 CDS Neut_1684 NC_008344.1 1778828 1780477 R KEGG: neu:NE1507 hypothetical protein; hypothetical protein complement(1778828..1780477) Nitrosomonas eutropha C91 4273685 YP_747891.1 CDS Neut_1685 NC_008344.1 1780489 1781628 R PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: neu:NE1508 HtrA-like serine protease signal peptide protein; peptidase S1 and S6, chymotrypsin/Hap complement(1780489..1781628) Nitrosomonas eutropha C91 4273568 YP_747892.1 CDS Neut_1686 NC_008344.1 1781666 1782412 D PFAM: protein of unknown function DUF34; KEGG: neu:NE1509 domain of unknown function DUF34; hypothetical protein 1781666..1782412 Nitrosomonas eutropha C91 4273569 YP_747893.1 CDS Neut_1687 NC_008344.1 1782409 1783875 D PFAM: MltA domain protein; 3D domain protein; KEGG: neu:NE1510 putative membrane-bound lytic murein transglycosylase A transmembrane protein; MltA domain-containing protein 1782409..1783875 Nitrosomonas eutropha C91 4273570 YP_747894.1 CDS Neut_1688 NC_008344.1 1783915 1784628 R KEGG: neu:NE1511 putative thiol:disulphide interchange protein; thiol:disulfide interchange protein complement(1783915..1784628) Nitrosomonas eutropha C91 4273571 YP_747895.1 CDS Neut_1689 NC_008344.1 1784674 1785840 R TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; KEGG: neu:NE1512 hypothetical protein; ubiquinone biosynthesis hydroxylase family protein complement(1784674..1785840) Nitrosomonas eutropha C91 4273572 YP_747896.1 CDS Neut_1690 NC_008344.1 1786071 1788038 D Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 1786071..1788038 Nitrosomonas eutropha C91 4273573 YP_747897.1 CDS Neut_1691 NC_008344.1 1788056 1789030 D PFAM: beta-lactamase domain protein; KEGG: neu:NE2342 metallo-beta-lactamase superfamily; beta-lactamase domain-containing protein 1788056..1789030 Nitrosomonas eutropha C91 4273574 YP_747898.1 CDS Neut_1692 NC_008344.1 1789134 1790414 R PFAM: amidohydrolase; KEGG: neu:NE2343 hypothetical protein; amidohydrolase complement(1789134..1790414) Nitrosomonas eutropha C91 4273575 YP_747899.1 CDS Neut_1693 NC_008344.1 1790693 1790863 D KEGG: msu:MS2298 hypothetical protein; hypothetical protein 1790693..1790863 Nitrosomonas eutropha C91 4273576 YP_747900.1 CDS Neut_1694 NC_008344.1 1791254 1792264 D PFAM: fatty acid desaturase; KEGG: rso:RS01923 putative omega-3 fatty acid desaturase transmembrane protein; fatty acid desaturase 1791254..1792264 Nitrosomonas eutropha C91 4273577 YP_747901.1 CDS Neut_1695 NC_008344.1 1793191 1793529 R hypothetical protein complement(1793191..1793529) Nitrosomonas eutropha C91 4273578 YP_747902.1 CDS Neut_1696 NC_008344.1 1793529 1793807 R KEGG: nma:NMA1217 transposase for IS1106A3; transposase for IS1106A3 complement(1793529..1793807) Nitrosomonas eutropha C91 4273579 YP_747903.1 CDS Neut_1697 NC_008344.1 1794283 1797201 D subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+; monovalent cation/H+ antiporter subunit A 1794283..1797201 Nitrosomonas eutropha C91 4273580 YP_747904.1 CDS Neut_1698 NC_008344.1 1797201 1797545 D subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit C 1797201..1797545 Nitrosomonas eutropha C91 4273581 YP_747905.1 CDS Neut_1699 NC_008344.1 1797542 1799188 D subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; monovalent cation/H+ antiporter subunit D 1797542..1799188 Nitrosomonas eutropha C91 4273582 YP_747906.1 CDS Neut_1700 NC_008344.1 1799185 1799670 D subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; monovalent cation/H+ antiporter subunit E 1799185..1799670 Nitrosomonas eutropha C91 4273583 YP_747907.1 CDS Neut_1701 NC_008344.1 1799667 1799948 D subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; monovalent cation/H+ antiporter subunit F 1799667..1799948 Nitrosomonas eutropha C91 4273584 YP_747908.1 CDS Neut_1702 NC_008344.1 1799945 1800370 D subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit G 1799945..1800370 Nitrosomonas eutropha C91 4273585 YP_747909.1 CDS Neut_1703 NC_008344.1 1800528 1803032 R PFAM: protein of unknown function DUF214; KEGG: neu:NE1453 DUF214; hypothetical protein complement(1800528..1803032) Nitrosomonas eutropha C91 4274063 YP_747910.1 CDS Neut_1704 NC_008344.1 1803156 1803872 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: neu:NE1454 ABC transporter, ATPase subunit; ABC transporter-like protein complement(1803156..1803872) Nitrosomonas eutropha C91 4274064 YP_747911.1 CDS Neut_1705 NC_008344.1 1803955 1804566 D PFAM: lipolytic enzyme, G-D-S-L family; KEGG: neu:NE1455 GDSL lipolytic enzyme; G-D-S-L family lipolytic protein 1803955..1804566 Nitrosomonas eutropha C91 4274065 YP_747912.1 CDS Neut_1706 NC_008344.1 1804606 1805670 R TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: neu:NE1456 ribosomal large subunit pseudouridine synthase C; RluA family pseudouridine synthase complement(1804606..1805670) Nitrosomonas eutropha C91 4274066 YP_747913.1 CDS Neut_1707 NC_008344.1 1806079 1808628 D TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: neu:NE1457 ribonuclease G and E; ribonuclease, Rne/Rng family protein 1806079..1808628 Nitrosomonas eutropha C91 4274067 YP_747914.1 CDS Neut_1708 NC_008344.1 1808760 1809677 R TIGRFAM: tyrosine recombinase XerD; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: neu:NE1458 phage integrase:phage integrase N-terminal SAM-like domain; tyrosine recombinase XerD complement(1808760..1809677) Nitrosomonas eutropha C91 4274068 YP_747915.1 CDS Neut_1709 NC_008344.1 1809799 1810644 R PFAM: cytochrome c assembly protein; KEGG: neu:NE1459 putative transmembrane protein; cytochrome c assembly protein complement(1809799..1810644) Nitrosomonas eutropha C91 4274069 YP_747916.1 CDS Neut_1710 NC_008344.1 1810787 1812136 D KEGG: neu:NE1460 signal recognition particle GTPase ffh protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54, G- domain; Signal peptide binding (SRP54) M- domain protein; SMART: AAA ATPase; signal recognition particle protein 1810787..1812136 Nitrosomonas eutropha C91 4274070 YP_747917.1 CDS Neut_1711 NC_008344.1 1812452 1812949 D PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: tfu:Tfu_1723 hypothetical protein; zinc-binding CMP/dCMP deaminase 1812452..1812949 Nitrosomonas eutropha C91 4274071 YP_747918.1 CDS Neut_1712 NC_008344.1 1812969 1813979 R TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: mac:MA1591 surface antigen gene; hypothetical protein complement(1812969..1813979) Nitrosomonas eutropha C91 4274072 YP_747919.1 CDS Neut_1715 NC_008344.1 1815144 1815815 R PFAM: protein of unknown function UPF0005; KEGG: tbd:Tbd_0489 hypothetical protein; hypothetical protein complement(1815144..1815815) Nitrosomonas eutropha C91 4274075 YP_747920.1 CDS Neut_1716 NC_008344.1 1815969 1816133 R hypothetical protein complement(1815969..1816133) Nitrosomonas eutropha C91 4274076 YP_747921.1 CDS Neut_1717 NC_008344.1 1816156 1816833 R PFAM: transposase, mutator type; KEGG: yps:YPTB3311 putative transposase; transposase, mutator type complement(1816156..1816833) Nitrosomonas eutropha C91 4274077 YP_747922.1 CDS Neut_1718 NC_008344.1 1817025 1817219 R KEGG: bsu:BG12582 aldehyde dehydrogenase; NAD-dependent aldehyde dehydrogenase-like protein complement(1817025..1817219) Nitrosomonas eutropha C91 4274078 YP_747923.1 CDS Neut_1719 NC_008344.1 1817234 1817527 D PFAM: transposase IS3/IS911 family protein; KEGG: sat:SYN_03173 transposase; transposase IS3/IS911 family protein 1817234..1817527 Nitrosomonas eutropha C91 4274079 YP_747924.1 CDS Neut_1720 NC_008344.1 1817626 1818228 D KEGG: pca:Pcar_0539 transposase; transposase 1817626..1818228 Nitrosomonas eutropha C91 4273169 YP_747925.1 CDS Neut_1721 NC_008344.1 1818219 1818503 D hypothetical protein 1818219..1818503 Nitrosomonas eutropha C91 4273170 YP_747926.1 CDS Neut_1722 NC_008344.1 1818562 1819749 D PFAM: amidohydrolase; Amidohydrolase 3; KEGG: ctc:CTC01883 cytosine deaminase; N-isopropylammelide isopropylaminohydrolase 1818562..1819749 Nitrosomonas eutropha C91 4273171 YP_747927.1 CDS Neut_1724 NC_008344.1 1820656 1823040 D KEGG: pol:Bpro_1178 heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein; heavy metal translocating P-type ATPase 1820656..1823040 Nitrosomonas eutropha C91 4273173 YP_747928.1 CDS Neut_1725 NC_008344.1 1823515 1823787 D hypothetical protein 1823515..1823787 Nitrosomonas eutropha C91 4273174 YP_747929.1 CDS Neut_1727 NC_008344.1 1825027 1826271 D PFAM: PepSY-associated TM helix domain protein; KEGG: neu:NE0537 hypothetical protein; PepSY-associated TM helix domain-containing protein 1825027..1826271 Nitrosomonas eutropha C91 4273176 YP_747930.1 CDS Neut_1728 NC_008344.1 1826459 1826692 D KEGG: neu:NE0538 outer membrane efflux protein; hypothetical protein 1826459..1826692 Nitrosomonas eutropha C91 4273177 YP_747931.1 CDS Neut_1729 NC_008344.1 1826683 1826823 D hypothetical protein 1826683..1826823 Nitrosomonas eutropha C91 4273178 YP_747932.1 CDS Neut_1730 NC_008344.1 1826850 1827272 D KEGG: neu:NE0538 outer membrane efflux protein; Outer membrane protein-like 1826850..1827272 Nitrosomonas eutropha C91 4273179 YP_747933.1 CDS Neut_1731 NC_008344.1 1827325 1827438 D KEGG: neu:NE0538 outer membrane efflux protein; outer membrane efflux protein 1827325..1827438 Nitrosomonas eutropha C91 4273180 YP_747934.1 CDS Neut_1732 NC_008344.1 1828127 1830139 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: ava:Ava_B0148 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 1828127..1830139 Nitrosomonas eutropha C91 4273181 YP_747935.1 CDS Neut_1733 NC_008344.1 1830311 1830988 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sha:SH0146 hypothetical protein; methyltransferase type 11 1830311..1830988 Nitrosomonas eutropha C91 4273182 YP_747936.1 CDS Neut_1734 NC_008344.1 1831074 1833017 D PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: nfa:nfa25640 hypothetical protein; pyridoxal-5'-phosphate-dependent protein subunit beta 1831074..1833017 Nitrosomonas eutropha C91 4273183 YP_747937.1 CDS Neut_1735 NC_008344.1 1833019 1834839 D PFAM: glutamine amidotransferase, class-II; asparagine synthase; KEGG: lpl:lp_0980 asparagine synthase (glutamine-hydrolysing); asparagine synthase 1833019..1834839 Nitrosomonas eutropha C91 4273184 YP_747938.1 CDS Neut_1736 NC_008344.1 1835009 1836505 D PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_1369 major facilitator superfamily MFS_1; major facilitator superfamily transporter 1835009..1836505 Nitrosomonas eutropha C91 4273185 YP_747939.1 CDS Neut_1739 NC_008344.1 1837979 1838173 D KEGG: rfr:Rfer_4341 DNA-directed DNA polymerase; hypothetical protein 1837979..1838173 Nitrosomonas eutropha C91 4273152 YP_747940.1 CDS Neut_1740 NC_008344.1 1838177 1839385 R PFAM: PepSY-associated TM helix domain protein; KEGG: bja:blr4505 hypothetical protein; PepSY-associated TM helix domain-containing protein complement(1838177..1839385) Nitrosomonas eutropha C91 4273153 YP_747941.1 CDS Neut_1741 NC_008344.1 1839391 1841520 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: ppu:PP3575 outer membrane ferric siderophore receptor; TonB-dependent siderophore receptor complement(1839391..1841520) Nitrosomonas eutropha C91 4273154 YP_747942.1 CDS Neut_1742 NC_008344.1 1841609 1842811 R PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: pol:Bpro_4782 Orn/DAP/Arg decarboxylase 2; diaminopimelate decarboxylase complement(1841609..1842811) Nitrosomonas eutropha C91 4273155 YP_747943.1 CDS Neut_1743 NC_008344.1 1842808 1844622 R PFAM: IucA/IucC family protein; KEGG: tbd:Tbd_0718 iron transporter; IucA/IucC family protein complement(1842808..1844622) Nitrosomonas eutropha C91 4273156 YP_747944.1 CDS Neut_1744 NC_008344.1 1844632 1845804 R PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_4784 major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(1844632..1845804) Nitrosomonas eutropha C91 4273157 YP_747945.1 CDS Neut_1745 NC_008344.1 1845847 1847658 R PFAM: IucA/IucC family protein; KEGG: sas:SAS0095 putative siderophore biosynthesis protein; IucA/IucC family protein complement(1845847..1847658) Nitrosomonas eutropha C91 4273158 YP_747946.1 CDS Neut_1746 NC_008344.1 1847862 1848824 D PFAM: Integrase, catalytic region; KEGG: nwi:Nwi_2917 integrase, catalytic region; integrase catalytic subunit 1847862..1848824 Nitrosomonas eutropha C91 4273159 YP_747947.1 CDS Neut_1747 NC_008344.1 1848984 1849178 R hypothetical protein complement(1848984..1849178) Nitrosomonas eutropha C91 4273160 YP_747948.1 CDS Neut_1748 NC_008344.1 1849256 1849423 R KEGG: hch:HCH_03287 transposase and inactivated derivatives; transposase and inactivated derivatives complement(1849256..1849423) Nitrosomonas eutropha C91 4273161 YP_747949.1 CDS Neut_1749 NC_008344.1 1849849 1851081 D KEGG: rba:RB12281 hypothetical protein; hypothetical protein 1849849..1851081 Nitrosomonas eutropha C91 4273162 YP_747950.1 CDS Neut_1751 NC_008344.1 1852149 1852553 R hypothetical protein complement(1852149..1852553) Nitrosomonas eutropha C91 4273164 YP_747951.1 CDS Neut_1752 NC_008344.1 1852636 1853442 D KEGG: pae:PA4662 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu racemase; glutamate racemase 1852636..1853442 Nitrosomonas eutropha C91 4273165 YP_747952.1 CDS Neut_1753 NC_008344.1 1853546 1854502 D PFAM: UspA domain protein; KEGG: neu:NE1201 universal stress protein (Usp); UspA domain-containing protein 1853546..1854502 Nitrosomonas eutropha C91 4273166 YP_747953.1 CDS Neut_1754 NC_008344.1 1854538 1855887 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(1854538..1855887) Nitrosomonas eutropha C91 4273167 YP_747954.1 CDS Neut_1755 NC_008344.1 1856326 1857507 D PFAM: phage integrase family protein; KEGG: rfr:Rfer_1354 phage integrase; phage integrase family protein 1856326..1857507 Nitrosomonas eutropha C91 4273136 YP_747955.1 CDS Neut_1756 NC_008344.1 1857796 1858272 R KEGG: nwi:Nwi_2921 ISRm2011-2 transposase protein; ISRm2011-2 transposase protein complement(1857796..1858272) Nitrosomonas eutropha C91 4273137 YP_747956.1 CDS Neut_1757 NC_008344.1 1858346 1858783 R KEGG: ret:RHE_PB00143 probable insertion sequence transposase protein; hypothetical protein complement(1858346..1858783) Nitrosomonas eutropha C91 4273138 YP_747957.1 CDS Neut_1758 NC_008344.1 1858846 1859814 D KEGG: lpp:plpp0083 hypothetical protein; hypothetical protein 1858846..1859814 Nitrosomonas eutropha C91 4273139 YP_747958.1 CDS Neut_1759 NC_008344.1 1860416 1860676 D hypothetical protein 1860416..1860676 Nitrosomonas eutropha C91 4273140 YP_747959.1 CDS Neut_1760 NC_008344.1 1860886 1862271 R KEGG: neu:NE0380 iron-sulfur-dependent L-serine dehydratase single chain form; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 complement(1860886..1862271) Nitrosomonas eutropha C91 4273141 YP_747960.1 CDS Neut_1761 NC_008344.1 1862720 1863508 D PFAM: peptidase S1 and S6, chymotrypsin/Hap; KEGG: neu:NE0379 serine protease, trypsin family; peptidase S1 and S6, chymotrypsin/Hap 1862720..1863508 Nitrosomonas eutropha C91 4273143 YP_747961.1 CDS Neut_1762 NC_008344.1 1863729 1865000 D PFAM: sugar transferase; KEGG: neu:NE0378 bacterial sugar transferase; sugar transferase 1863729..1865000 Nitrosomonas eutropha C91 4273144 YP_747962.1 CDS Neut_1763 NC_008344.1 1865050 1867131 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: neu:NE0377 sensory transduction histidine kinase; periplasmic sensor signal transduction histidine kinase 1865050..1867131 Nitrosomonas eutropha C91 4273145 YP_747963.1 CDS Neut_1764 NC_008344.1 1867215 1869077 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: neu:NE0376 ABC transporter, fused permease and ATPase domains; ABC transporter-like protein 1867215..1869077 Nitrosomonas eutropha C91 4273146 YP_747964.1 CDS Neut_1765 NC_008344.1 1869112 1872207 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: neu:NE0375 acriflavin resistance protein:heavy metal efflux pump CzcA; CzcA family heavy metal efflux pump complement(1869112..1872207) Nitrosomonas eutropha C91 4273147 YP_747965.1 CDS Neut_1766 NC_008344.1 1872210 1873373 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: neu:NE0374 putative cation efflux protein; RND family efflux transporter MFP subunit complement(1872210..1873373) Nitrosomonas eutropha C91 4273148 YP_747966.1 CDS Neut_1767 NC_008344.1 1873383 1874636 R PFAM: outer membrane efflux protein; KEGG: neu:NE0373 outer membrane efflux protein; outer membrane efflux protein complement(1873383..1874636) Nitrosomonas eutropha C91 4273149 YP_747967.1 CDS Neut_1768 NC_008344.1 1874980 1875639 R KEGG: neu:NE0372 hypothetical protein; hypothetical protein complement(1874980..1875639) Nitrosomonas eutropha C91 4273150 YP_747968.1 CDS Neut_1769 NC_008344.1 1875753 1876472 D PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: neu:NE0371 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 1875753..1876472 Nitrosomonas eutropha C91 4273151 YP_747969.1 CDS Neut_1770 NC_008344.1 1876482 1877657 D PFAM: FAD dependent oxidoreductase; KEGG: neu:NE0370 NAD binding site:D-amino acid oxidase; FAD dependent oxidoreductase 1876482..1877657 Nitrosomonas eutropha C91 4273119 YP_747970.1 CDS Neut_1771 NC_008344.1 1877687 1878019 R KEGG: neu:NE0369 hypothetical protein; hypothetical protein complement(1877687..1878019) Nitrosomonas eutropha C91 4273120 YP_747971.1 CDS Neut_1772 NC_008344.1 1878112 1878513 R KEGG: neu:NE2318 hypothetical protein; hypothetical protein complement(1878112..1878513) Nitrosomonas eutropha C91 4273121 YP_747972.1 CDS Neut_1773 NC_008344.1 1878554 1880014 R E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(1878554..1880014) Nitrosomonas eutropha C91 4273122 YP_747973.1 CDS Neut_1774 NC_008344.1 1880088 1881134 R hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase complement(1880088..1881134) Nitrosomonas eutropha C91 4273123 YP_747974.1 CDS acpS NC_008344.1 1881137 1881514 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase complement(1881137..1881514) Nitrosomonas eutropha C91 4273124 YP_747975.1 CDS Neut_1776 NC_008344.1 1881511 1882236 R involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase complement(1881511..1882236) Nitrosomonas eutropha C91 4273125 YP_747976.1 CDS era NC_008344.1 1882354 1883244 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(1882354..1883244) Nitrosomonas eutropha C91 4273126 YP_747977.1 CDS rnc NC_008344.1 1883322 1884059 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(1883322..1884059) Nitrosomonas eutropha C91 4273127 YP_747978.1 CDS Neut_1779 NC_008344.1 1884056 1884439 R KEGG: neu:NE2325 possible transmembrane protein; transmembrane protein complement(1884056..1884439) Nitrosomonas eutropha C91 4273128 YP_747979.1 CDS Neut_1780 NC_008344.1 1884475 1885278 R KEGG: neu:NE2326 bacterial leader peptidase 1 (S26A) family:Signal peptidase; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; signal peptidase I complement(1884475..1885278) Nitrosomonas eutropha C91 4273129 YP_747980.1 CDS Neut_1781 NC_008344.1 1885350 1887146 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(1885350..1887146) Nitrosomonas eutropha C91 4273130 YP_747981.1 CDS Neut_1782 NC_008344.1 1887448 1887705 R PFAM: glutaredoxin 2; KEGG: neu:NE2328 putative thioredoxin; glutaredoxin complement(1887448..1887705) Nitrosomonas eutropha C91 4273131 YP_747982.1 CDS Neut_1783 NC_008344.1 1887698 1889170 R TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: neu:NE2329 serine protease MucD precursor; protease Do complement(1887698..1889170) Nitrosomonas eutropha C91 4273132 YP_747983.1 CDS Neut_1784 NC_008344.1 1889347 1889922 R KEGG: neu:NE2330 sigma-E factor negative regulatory protein RseA; sigma-E factor negative regulatory protein RseA complement(1889347..1889922) Nitrosomonas eutropha C91 4273133 YP_747984.1 CDS Neut_1785 NC_008344.1 1889936 1890538 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE complement(1889936..1890538) Nitrosomonas eutropha C91 4273134 YP_747985.1 CDS Neut_1786 NC_008344.1 1890736 1891587 R PFAM: CBS domain containing protein; transporter-associated region; KEGG: neu:NE2332 CBS domain; hypothetical protein complement(1890736..1891587) Nitrosomonas eutropha C91 4273135 YP_747986.1 CDS Neut_1787 NC_008344.1 1891641 1892066 R PFAM: protein of unknown function UPF0054; KEGG: neu:NE2333 uncharacterized protein family UPF0054; hypothetical protein complement(1891641..1892066) Nitrosomonas eutropha C91 4272265 YP_747987.1 CDS Neut_1788 NC_008344.1 1892095 1893105 R PFAM: PhoH family protein; KEGG: neu:NE2334 PhoH-like protein; PhoH family protein complement(1892095..1893105) Nitrosomonas eutropha C91 4272266 YP_747988.1 CDS Neut_1789 NC_008344.1 1893167 1894498 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase complement(1893167..1894498) Nitrosomonas eutropha C91 4272267 YP_747989.1 CDS Neut_1790 NC_008344.1 1894791 1895495 R PFAM: NapC/NirT cytochrome c domain protein; KEGG: neu:NE2336 putative tetraheme C-cytochrome; NapC/NirT cytochrome c domain-containing protein complement(1894791..1895495) Nitrosomonas eutropha C91 4272268 YP_747990.1 CDS Neut_1791 NC_008344.1 1895498 1896205 R KEGG: neu:NE2337 cytochrome c-554 precursor; cytochrome c-554 complement(1895498..1896205) Nitrosomonas eutropha C91 4272269 YP_747991.1 CDS Neut_1792 NC_008344.1 1896267 1897388 R KEGG: neu:NE2338 hypothetical protein; hypothetical protein complement(1896267..1897388) Nitrosomonas eutropha C91 4272270 YP_747992.1 CDS Neut_1793 NC_008344.1 1897385 1899097 R KEGG: neu:NE2339 hydroxylamine oxidoreductase; hydroxylamine oxidase complement(1897385..1899097) Nitrosomonas eutropha C91 4272271 YP_747993.1 CDS Neut_1794 NC_008344.1 1899317 1903531 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' complement(1899317..1903531) Nitrosomonas eutropha C91 4272272 YP_747994.1 CDS rpoB NC_008344.1 1903688 1907767 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(1903688..1907767) Nitrosomonas eutropha C91 4272273 YP_747995.1 CDS rplL NC_008344.1 1908133 1908498 R present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 complement(1908133..1908498) Nitrosomonas eutropha C91 4272274 YP_747996.1 CDS rplJ NC_008344.1 1908584 1909099 R binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 complement(1908584..1909099) Nitrosomonas eutropha C91 4272275 YP_747997.1 CDS rplA NC_008344.1 1909466 1910161 R in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 complement(1909466..1910161) Nitrosomonas eutropha C91 4272276 YP_747998.1 CDS rplK NC_008344.1 1910163 1910594 R binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 complement(1910163..1910594) Nitrosomonas eutropha C91 4272277 YP_747999.1 CDS nusG NC_008344.1 1910711 1911244 R Modulates Rho-dependent transcription termination; transcription antitermination protein NusG complement(1910711..1911244) Nitrosomonas eutropha C91 4272278 YP_748000.1 CDS secE NC_008344.1 1911263 1911607 R forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE complement(1911263..1911607) Nitrosomonas eutropha C91 4272279 YP_748001.1 CDS Neut_1802 NC_008344.1 1911851 1913041 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(1911851..1913041) Nitrosomonas eutropha C91 4272281 YP_748002.1 CDS Neut_1803 NC_008344.1 1913589 1915751 R TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; Secretin/TonB, short N-terminal domain; KEGG: neu:NE2312 probable fimbrial type-4 assembly signal peptide protein; type IV pilus secretin PilQ complement(1913589..1915751) Nitrosomonas eutropha C91 4272744 YP_748003.1 CDS Neut_1804 NC_008344.1 1915748 1916275 R PFAM: Pilus assembly protein, PilQ; KEGG: neu:NE2313 putative type 4 fimbrial biogenesis protein PilP; pilus assembly protein, PilQ complement(1915748..1916275) Nitrosomonas eutropha C91 4272745 YP_748004.1 CDS Neut_1805 NC_008344.1 1916272 1916922 R PFAM: Pilus assembly protein, PilO; KEGG: neu:NE2314 putative fimbrial type-4 assembly membrane transmembrane protein; pilus assembly protein, PilO complement(1916272..1916922) Nitrosomonas eutropha C91 4272746 YP_748005.1 CDS Neut_1806 NC_008344.1 1916919 1917530 R PFAM: Fimbrial assembly family protein; KEGG: neu:NE2315 putative type 4 fimbrial biogenesis protein PilN; fimbrial assembly family protein complement(1916919..1917530) Nitrosomonas eutropha C91 4272747 YP_748006.1 CDS Neut_1807 NC_008344.1 1917527 1918651 R TIGRFAM: type IV pilus assembly protein PilM; KEGG: neu:NE2316 putative type 4 fimbrial biogenesis protein PilM; type IV pilus assembly protein PilM complement(1917527..1918651) Nitrosomonas eutropha C91 4272748 YP_748007.1 CDS Neut_1808 NC_008344.1 1918810 1921122 D KEGG: neu:NE2317 penicillin-binding 1 (peptidoglycan synthetase) transmembrane protein; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; penicillin-binding protein, 1A family protein 1918810..1921122 Nitrosomonas eutropha C91 4272749 YP_748008.1 CDS Neut_1809 NC_008344.1 1921410 1922330 R PFAM: histone deacetylase superfamily; KEGG: rso:RSc0919 hypothetical protein; histone deacetylase superfamily protein complement(1921410..1922330) Nitrosomonas eutropha C91 4272750 YP_748009.1 CDS Neut_1810 NC_008344.1 1922467 1922688 R KEGG: tbd:Tbd_2423 prevent-host-death protein; prevent-host-death protein complement(1922467..1922688) Nitrosomonas eutropha C91 4272751 YP_748010.1 CDS Neut_1811 NC_008344.1 1922877 1923164 R KEGG: pfl:PFL_0652 hypothetical protein; transcriptional regulator complement(1922877..1923164) Nitrosomonas eutropha C91 4272752 YP_748011.1 CDS Neut_1812 NC_008344.1 1923124 1923531 R KEGG: hit:NTHI1201 hypothetical protein; hypothetical protein complement(1923124..1923531) Nitrosomonas eutropha C91 4272753 YP_748012.1 CDS Neut_1813 NC_008344.1 1923721 1924017 D PFAM: transposase IS3/IS911 family protein; KEGG: lpf:lpl1584 hypothetical protein; transposase IS3/IS911 family protein 1923721..1924017 Nitrosomonas eutropha C91 4272754 YP_748013.1 CDS Neut_1814 NC_008344.1 1924065 1924892 D PFAM: Integrase, catalytic region; KEGG: lpf:lpl1576 hypothetical protein; integrase catalytic subunit 1924065..1924892 Nitrosomonas eutropha C91 4272603 YP_748014.1 CDS Neut_1816 NC_008344.1 1925546 1925827 R KEGG: cch:Cag_1577 hypothetical protein; hypothetical protein complement(1925546..1925827) Nitrosomonas eutropha C91 4272605 YP_748015.1 CDS Neut_1817 NC_008344.1 1925811 1926056 R KEGG: cch:Cag_1576 hypothetical protein; hypothetical protein complement(1925811..1926056) Nitrosomonas eutropha C91 4272606 YP_748016.1 CDS Neut_1818 NC_008344.1 1926472 1927275 R PFAM: Integrase, catalytic region; KEGG: nwi:Nwi_2917 integrase, catalytic region; integrase catalytic subunit complement(1926472..1927275) Nitrosomonas eutropha C91 4272607 YP_748017.1 CDS Neut_1819 NC_008344.1 1927409 1928200 R PFAM: Integrase, catalytic region; KEGG: pol:Bpro_5204 integrase, catalytic region; integrase catalytic subunit complement(1927409..1928200) Nitrosomonas eutropha C91 4272608 YP_748018.1 CDS Neut_1820 NC_008344.1 1928314 1928637 R PFAM: transposase IS3/IS911 family protein; KEGG: mca:MCA1895 ISMca3, transposase, OrfA; transposase IS3/IS911 family protein complement(1928314..1928637) Nitrosomonas eutropha C91 4272609 YP_748019.1 CDS Neut_1821 NC_008344.1 1928740 1929000 R KEGG: gox:GOX1387 transposase (fragment); hypothetical protein complement(1928740..1929000) Nitrosomonas eutropha C91 4272610 YP_748020.1 CDS Neut_1822 NC_008344.1 1929188 1929547 R PFAM: flagellar protein FlaG protein; KEGG: neu:NE1594 putative flagellar protein FlaG; flagellar protein FlaG protein complement(1929188..1929547) Nitrosomonas eutropha C91 4272611 YP_748021.1 CDS Neut_1823 NC_008344.1 1930061 1930348 R PFAM: Excinuclease ABC, C subunit domain protein; KEGG: nha:Nham_0101 excinuclease ABC, C subunit-like; excinuclease ABC subunit C complement(1930061..1930348) Nitrosomonas eutropha C91 4272612 YP_748022.1 CDS Neut_1824 NC_008344.1 1930532 1932007 R PFAM: flagellin domain protein; KEGG: noc:Noc_2367 flagellin; flagellin domain-containing protein complement(1930532..1932007) Nitrosomonas eutropha C91 4272613 YP_748023.1 CDS Neut_1825 NC_008344.1 1932494 1933342 R PFAM: Integrase, catalytic region; KEGG: pol:Bpro_5204 integrase, catalytic region; integrase catalytic subunit complement(1932494..1933342) Nitrosomonas eutropha C91 4272614 YP_748024.1 CDS Neut_1826 NC_008344.1 1933399 1933722 R PFAM: transposase IS3/IS911 family protein; KEGG: mca:MCA1895 ISMca3, transposase, OrfA; transposase IS3/IS911 family protein complement(1933399..1933722) Nitrosomonas eutropha C91 4272615 YP_748025.1 CDS Neut_1827 NC_008344.1 1933967 1934683 R KEGG: sdn:Sden_3083 hypothetical protein; hypothetical protein complement(1933967..1934683) Nitrosomonas eutropha C91 4272616 YP_748026.1 CDS Neut_1828 NC_008344.1 1935509 1937335 R TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region, ATPase domain protein domain protein; DNA mismatch repair protein, C-terminal domain protein; KEGG: neu:NE1742 DNA mismatch repair protein; DNA mismatch repair protein MutL complement(1935509..1937335) Nitrosomonas eutropha C91 4272617 YP_748027.1 CDS Neut_1829 NC_008344.1 1937439 1938164 D Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 1937439..1938164 Nitrosomonas eutropha C91 4272618 YP_748028.1 CDS Neut_1830 NC_008344.1 1938358 1939077 D TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: neu:NE1744 protein of unknown function DUF65; phosphate uptake regulator PhoU 1938358..1939077 Nitrosomonas eutropha C91 4272619 YP_748029.1 CDS Neut_1831 NC_008344.1 1939103 1940638 D PFAM: Ppx/GppA phosphatase; KEGG: neu:NE1745 Ppx/GppA phosphatase; ppx/GppA phosphatase 1939103..1940638 Nitrosomonas eutropha C91 4272620 YP_748030.1 CDS Neut_1832 NC_008344.1 1940647 1941096 R KEGG: neu:NE1746 fimbrial protein pilin; fimbrial protein pilin complement(1940647..1941096) Nitrosomonas eutropha C91 4272586 YP_748031.1 CDS Neut_1833 NC_008344.1 1941127 1944558 R KEGG: neu:NE1747 putative type 4 fimbrial biogenesis protein PilY1; type 4 fimbrial biogenesis protein PilY1 complement(1941127..1944558) Nitrosomonas eutropha C91 4272587 YP_748032.1 CDS Neut_1834 NC_008344.1 1944570 1945421 R KEGG: neu:NE1748 type IV pilus assembly protein PilX; type IV pilus assembly protein PilX complement(1944570..1945421) Nitrosomonas eutropha C91 4272588 YP_748033.1 CDS Neut_1835 NC_008344.1 1945447 1946511 R TIGRFAM: Prepilin-type cleavage/methylation-like; KEGG: neu:NE1749 type IV pilus assembly protein PilW; prepilin-type cleavage/methylation-like complement(1945447..1946511) Nitrosomonas eutropha C91 4272589 YP_748034.1 CDS Neut_1836 NC_008344.1 1946529 1947023 R TIGRFAM: Prepilin-type cleavage/methylation-like; type IV pilus modification protein PilV; KEGG: neu:NE1750 putative pre-pilin leader sequence; type IV pilus modification protein PilV complement(1946529..1947023) Nitrosomonas eutropha C91 4272590 YP_748035.1 CDS Neut_1837 NC_008344.1 1947001 1947558 R KEGG: neu:NE1751 putative type-4 fimbrial pilin related signal peptide protein; fimbrial pilin related signal peptide protein complement(1947001..1947558) Nitrosomonas eutropha C91 4272591 YP_748036.1 CDS Neut_1838 NC_008344.1 1947735 1947956 D KEGG: nmu:Nmul_A2046 hypothetical protein; hypothetical protein 1947735..1947956 Nitrosomonas eutropha C91 4272592 YP_748037.1 CDS Neut_1839 NC_008344.1 1947987 1948619 R PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: nmu:Nmul_A1336 two component transcriptional regulator, LuxR family; LuxR family two component transcriptional regulator complement(1947987..1948619) Nitrosomonas eutropha C91 4272593 YP_748038.1 CDS Neut_1840 NC_008344.1 1948671 1950167 R TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; PAS fold-3 domain protein; KEGG: neu:NE1738 sensory transduction histidine kinase; multi-sensor signal transduction histidine kinase complement(1948671..1950167) Nitrosomonas eutropha C91 4272594 YP_748039.1 CDS Neut_1841 NC_008344.1 1950833 1952380 R PFAM: O-antigen polymerase; KEGG: sru:SRU_1271 pilin glycosylation enzyme, putative; O-antigen polymerase complement(1950833..1952380) Nitrosomonas eutropha C91 4272595 YP_748040.1 CDS Neut_1842 NC_008344.1 1952523 1952930 R PFAM: Fimbrial protein pilin; KEGG: neu:NE1308 fimbrial protein pilin:bacterial general secretion pathway protein H; fimbrial protein pilin complement(1952523..1952930) Nitrosomonas eutropha C91 4272596 YP_748041.1 CDS Neut_1843 NC_008344.1 1953058 1954830 R KEGG: stm:STM3551 gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase complement(1953058..1954830) Nitrosomonas eutropha C91 4272597 YP_748042.1 CDS Neut_1844 NC_008344.1 1955145 1956065 R PFAM: Integrase, catalytic region; KEGG: nwi:Nwi_2917 integrase, catalytic region; integrase catalytic subunit complement(1955145..1956065) Nitrosomonas eutropha C91 4272598 YP_748043.1 CDS Neut_1845 NC_008344.1 1956165 1956674 R KEGG: neu:NE1179 putative transmembrane protein; transmembrane protein complement(1956165..1956674) Nitrosomonas eutropha C91 4272599 YP_748044.1 CDS Neut_1846 NC_008344.1 1956948 1957418 R PFAM: transposase, IS4 family protein; KEGG: eba:p2A101 putative transposase, fragment; transposase, IS4 family protein complement(1956948..1957418) Nitrosomonas eutropha C91 4272600 YP_748045.1 CDS Neut_1848 NC_008344.1 1957781 1958701 R PFAM: Integrase, catalytic region; KEGG: nwi:Nwi_2917 integrase, catalytic region; integrase catalytic subunit complement(1957781..1958701) Nitrosomonas eutropha C91 4272602 YP_748046.1 CDS Neut_1849 NC_008344.1 1958665 1959282 R hypothetical protein complement(1958665..1959282) Nitrosomonas eutropha C91 4272568 YP_748047.1 CDS Neut_1850 NC_008344.1 1959539 1959940 R KEGG: nmu:Nmul_A1554 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(1959539..1959940) Nitrosomonas eutropha C91 4272569 YP_748048.1 CDS Neut_1851 NC_008344.1 1960144 1960713 R KEGG: ana:all1573 unknown protein; hypothetical protein complement(1960144..1960713) Nitrosomonas eutropha C91 4272570 YP_748049.1 CDS Neut_1852 NC_008344.1 1960875 1961420 R KEGG: ani:AN6320.2 hypothetical protein; hypothetical protein complement(1960875..1961420) Nitrosomonas eutropha C91 4272571 YP_748050.1 CDS Neut_1853 NC_008344.1 1961448 1962746 R KEGG: bja:bll0020 hypothetical protein; hypothetical protein complement(1961448..1962746) Nitrosomonas eutropha C91 4272572 YP_748051.1 CDS Neut_1854 NC_008344.1 1962761 1964239 R KEGG: sde:Sde_1587 pseudouridine synthase, RluD; hypothetical protein complement(1962761..1964239) Nitrosomonas eutropha C91 4272573 YP_748052.1 CDS Neut_1855 NC_008344.1 1964301 1965221 R PFAM: Integrase, catalytic region; KEGG: nwi:Nwi_2917 integrase, catalytic region; integrase catalytic subunit complement(1964301..1965221) Nitrosomonas eutropha C91 4272574 YP_748053.1 CDS Neut_1856 NC_008344.1 1965185 1965733 R hypothetical protein complement(1965185..1965733) Nitrosomonas eutropha C91 4272575 YP_748054.1 CDS Neut_1857 NC_008344.1 1965900 1966730 R KEGG: mca:MCA1000 hypothetical protein; hypothetical protein complement(1965900..1966730) Nitrosomonas eutropha C91 4272576 YP_748055.1 CDS Neut_1858 NC_008344.1 1966823 1967284 R PFAM: Ferritin, Dps family protein; KEGG: nmu:Nmul_A2388 ferritin and Dps; Ferritin, Dps family protein complement(1966823..1967284) Nitrosomonas eutropha C91 4272577 YP_748056.1 CDS Neut_1859 NC_008344.1 1967470 1970622 R proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase complement(1967470..1970622) Nitrosomonas eutropha C91 4272578 YP_748057.1 CDS Neut_1860 NC_008344.1 1970852 1971277 R KEGG: eca:ECA2201 putative integrase; hypothetical protein complement(1970852..1971277) Nitrosomonas eutropha C91 4272579 YP_748058.1 CDS Neut_1861 NC_008344.1 1971641 1972012 D KEGG: nmu:Nmul_A2680 hypothetical protein; hypothetical protein 1971641..1972012 Nitrosomonas eutropha C91 4272580 YP_748059.1 CDS Neut_1862 NC_008344.1 1972289 1973251 R PFAM: Integrase, catalytic region; KEGG: nwi:Nwi_2917 integrase, catalytic region; integrase catalytic subunit complement(1972289..1973251) Nitrosomonas eutropha C91 4272581 YP_748060.1 CDS Neut_1863 NC_008344.1 1973523 1974125 D KEGG: sth:STH2472 hypothetical protein; hypothetical protein 1973523..1974125 Nitrosomonas eutropha C91 4272582 YP_748061.1 CDS Neut_1864 NC_008344.1 1974247 1976646 R PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: neu:NE1183 serine protease, subtilase family; peptidase S8/S53 subtilisin kexin sedolisin complement(1974247..1976646) Nitrosomonas eutropha C91 4272583 YP_748062.1 CDS Neut_1865 NC_008344.1 1977112 1977498 D KEGG: cvi:CV1896 hypothetical protein; hypothetical protein 1977112..1977498 Nitrosomonas eutropha C91 4272584 YP_748063.1 CDS Neut_1866 NC_008344.1 1978211 1978939 R PFAM: phospholipid/glycerol acyltransferase; KEGG: neu:NE1184 phospholipid and glycerol acyltransferase (from 'motifs_6.msf'); phospholipid/glycerol acyltransferase complement(1978211..1978939) Nitrosomonas eutropha C91 4272585 YP_748064.1 CDS Neut_1867 NC_008344.1 1978939 1979481 R Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase complement(1978939..1979481) Nitrosomonas eutropha C91 4272329 YP_748065.1 CDS Neut_1868 NC_008344.1 1979508 1981655 R KEGG: neu:NE1186 glycyl-tRNA synthetase, beta subunit; glycine--tRNA ligase complement(1979508..1981655) Nitrosomonas eutropha C91 4272330 YP_748066.1 CDS glyQ NC_008344.1 1981652 1982575 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(1981652..1982575) Nitrosomonas eutropha C91 4272331 YP_748067.1 CDS lnt NC_008344.1 1982608 1984101 R Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase complement(1982608..1984101) Nitrosomonas eutropha C91 4272332 YP_748068.1 CDS Neut_1871 NC_008344.1 1984157 1984525 R KEGG: neu:NE1189 hypothetical protein; hypothetical protein complement(1984157..1984525) Nitrosomonas eutropha C91 4272333 YP_748069.1 CDS Neut_1872 NC_008344.1 1984980 1986689 D PFAM: multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: mca:MCA2129 multicopper oxidase family protein; multicopper oxidase, type 3 1984980..1986689 Nitrosomonas eutropha C91 4272334 YP_748070.1 CDS Neut_1873 NC_008344.1 1986689 1987783 D KEGG: mca:MCA2128 hypothetical protein; hypothetical protein 1986689..1987783 Nitrosomonas eutropha C91 4272335 YP_748071.1 CDS Neut_1874 NC_008344.1 1988827 1989351 D PFAM: cytochrome c oxidase, subunit II; KEGG: neu:NE0684 possible cytochrome-c oxidase chain II; cytochrome c oxidase subunit II 1988827..1989351 Nitrosomonas eutropha C91 4272336 YP_748072.1 CDS Neut_1875 NC_008344.1 1989389 1990867 D PFAM: cytochrome c oxidase, subunit I; KEGG: neu:NE0683 cytochrome c oxidase, subunit I; cytochrome c oxidase subunit I 1989389..1990867 Nitrosomonas eutropha C91 4272337 YP_748073.1 CDS Neut_1876 NC_008344.1 1990963 1991592 D PFAM: electron transport protein SCO1/SenC; KEGG: neu:NE0682 SCO1/SenC; electron transport protein SCO1/SenC 1990963..1991592 Nitrosomonas eutropha C91 4272338 YP_748074.1 CDS Neut_1877 NC_008344.1 1991576 1992145 D KEGG: neu:NE0681 putative transmembrane protein; transmembrane protein 1991576..1992145 Nitrosomonas eutropha C91 4272339 YP_748075.1 CDS Neut_1878 NC_008344.1 1992192 1993109 R PFAM: formate/nitrite transporter; KEGG: neu:NE0680 formate and nitrite transporters; formate/nitrite transporter complement(1992192..1993109) Nitrosomonas eutropha C91 4272340 YP_748076.1 CDS Neut_1879 NC_008344.1 1993460 1994467 R TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: neu:NE0679 NAD dependent epimerase/dehydratase family; UDP-glucose 4-epimerase complement(1993460..1994467) Nitrosomonas eutropha C91 4272341 YP_748077.1 CDS Neut_1880 NC_008344.1 1994543 1995430 R TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: neu:NE0677 ADP-glucose pyrophosphorylase; glucose-1-phosphate thymidylyltransferase complement(1994543..1995430) Nitrosomonas eutropha C91 4272342 YP_748078.1 CDS Neut_1881 NC_008344.1 1995660 1996580 D KEGG: neu:NE0676 probable oxidoreductase; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; 2-hydroxy-3-oxopropionate reductase 1995660..1996580 Nitrosomonas eutropha C91 4272343 YP_748079.1 CDS Neut_1882 NC_008344.1 1996570 1998024 D PFAM: FAD linked oxidase domain protein; KEGG: neu:NE0675 glycolate oxidase subunit GlcD; FAD linked oxidase domain-containing protein 1996570..1998024 Nitrosomonas eutropha C91 4272344 YP_748080.1 CDS glcE NC_008344.1 1998049 1999149 D PFAM: FAD linked oxidase domain protein; KEGG: neu:NE0674 FAD linked oxidase, N-terminal; glycolate oxidase FAD binding subunit 1998049..1999149 Nitrosomonas eutropha C91 4272345 YP_748081.1 CDS glcF NC_008344.1 1999153 2000415 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: neu:NE0673 glycolate oxidase (iron-sulfur subunit) protein; glycolate oxidase iron-sulfur subunit 1999153..2000415 Nitrosomonas eutropha C91 4274130 YP_748082.1 CDS Neut_1885 NC_008344.1 2000441 2001157 R PFAM: protein of unknown function DUF45; KEGG: neu:NE0672 putative; hypothetical protein complement(2000441..2001157) Nitrosomonas eutropha C91 4274131 YP_748083.1 CDS Neut_1886 NC_008344.1 2001182 2001955 R enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase complement(2001182..2001955) Nitrosomonas eutropha C91 4274132 YP_748084.1 CDS sbcB NC_008344.1 2002029 2003489 R Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I complement(2002029..2003489) Nitrosomonas eutropha C91 4274133 YP_748085.1 CDS Neut_1888 NC_008344.1 2003695 2004543 R PFAM: Integrase, catalytic region; KEGG: pol:Bpro_5204 integrase, catalytic region; integrase catalytic subunit complement(2003695..2004543) Nitrosomonas eutropha C91 4274134 YP_748086.1 CDS Neut_1889 NC_008344.1 2004600 2004923 R PFAM: transposase IS3/IS911 family protein; KEGG: mca:MCA1895 ISMca3, transposase, OrfA; transposase IS3/IS911 family protein complement(2004600..2004923) Nitrosomonas eutropha C91 4274135 YP_748087.1 CDS Neut_1890 NC_008344.1 2005134 2005829 D KEGG: ftu:FTT0395 hypothetical protein; hypothetical protein 2005134..2005829 Nitrosomonas eutropha C91 4274136 YP_748088.1 CDS Neut_1891 NC_008344.1 2006125 2006979 R KEGG: neu:NE0661 5,10-methylenetetrahydrofolate reductase oxidoreductase protein; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase complement(2006125..2006979) Nitrosomonas eutropha C91 4274137 YP_748089.1 CDS Neut_1892 NC_008344.1 2007260 2008696 R catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase complement(2007260..2008696) Nitrosomonas eutropha C91 4274138 YP_748090.1 CDS Neut_1893 NC_008344.1 2008832 2009995 R catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(2008832..2009995) Nitrosomonas eutropha C91 4274139 YP_748091.1 CDS Neut_1894 NC_008344.1 2010288 2010986 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: neu:NE0658 short-chain dehydrogenase/reductase (SDR) superfamily; short-chain dehydrogenase/reductase SDR 2010288..2010986 Nitrosomonas eutropha C91 4274140 YP_748092.1 CDS Neut_1895 NC_008344.1 2011033 2011509 D PFAM: protein of unknown function UPF0079; KEGG: neu:NE0657 uncharacterised P-loop hydrolase UPF0079; hypothetical protein 2011033..2011509 Nitrosomonas eutropha C91 4274141 YP_748093.1 CDS Neut_1896 NC_008344.1 2011506 2012813 D PFAM: cell wall hydrolase/autolysin; KEGG: neu:NE0656 cell wall hydrolase/autolysin; N-acetylmuramoyl-L-alanine amidase 2011506..2012813 Nitrosomonas eutropha C91 4274142 YP_748094.1 CDS Neut_1897 NC_008344.1 2012868 2013620 R TIGRFAM: MJ0042 family finger-like protein; KEGG: neu:NE0655 hypothetical protein; Zinc finger-domain-containing protein complement(2012868..2013620) Nitrosomonas eutropha C91 4274143 YP_748095.1 CDS prmA NC_008344.1 2013617 2014558 R methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase complement(2013617..2014558) Nitrosomonas eutropha C91 4274144 YP_748096.1 CDS Neut_1899 NC_008344.1 2014594 2015952 R TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: neu:NE0653 biotin carboxylase protein; acetyl-CoA carboxylase, biotin carboxylase complement(2014594..2015952) Nitrosomonas eutropha C91 4274145 YP_748097.1 CDS Neut_1900 NC_008344.1 2016024 2016482 R TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: neu:NE0652 possible biotin carboxyl carrier protein of acetyl-CoA carboxylase (bccp); acetyl-CoA carboxylase, biotin carboxyl carrier protein complement(2016024..2016482) Nitrosomonas eutropha C91 4274146 YP_748098.1 CDS Neut_1901 NC_008344.1 2016693 2017130 R catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase complement(2016693..2017130) Nitrosomonas eutropha C91 4274147 YP_748099.1 CDS Neut_1902 NC_008344.1 2017310 2018419 D TIGRFAM: glycine oxidase ThiO; PFAM: FAD dependent oxidoreductase; KEGG: neu:NE0650 NAD binding site:D-amino acid oxidase; glycine oxidase ThiO 2017310..2018419 Nitrosomonas eutropha C91 4273686 YP_748100.1 CDS ispH NC_008344.1 2018426 2019397 R catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase complement(2018426..2019397) Nitrosomonas eutropha C91 4273687 YP_748101.1 CDS Neut_1904 NC_008344.1 2019687 2019971 D KEGG: neu:NE0648 hypothetical protein; hypothetical protein 2019687..2019971 Nitrosomonas eutropha C91 4273688 YP_748102.1 CDS Neut_1905 NC_008344.1 2020011 2021090 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 2020011..2021090 Nitrosomonas eutropha C91 4273689 YP_748103.1 CDS hisB NC_008344.1 2021133 2021720 D catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 2021133..2021720 Nitrosomonas eutropha C91 4273690 YP_748104.1 CDS hisH NC_008344.1 2021753 2022391 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 2021753..2022391 Nitrosomonas eutropha C91 4273691 YP_748105.1 CDS Neut_1908 NC_008344.1 2022476 2023222 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 2022476..2023222 Nitrosomonas eutropha C91 4273692 YP_748106.1 CDS Neut_1909 NC_008344.1 2023312 2024088 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 2023312..2024088 Nitrosomonas eutropha C91 4273693 YP_748107.1 CDS hisI NC_008344.1 2024228 2024617 D PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase 2024228..2024617 Nitrosomonas eutropha C91 4273694 YP_748108.1 CDS hisE NC_008344.1 2024614 2024967 D catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase 2024614..2024967 Nitrosomonas eutropha C91 4273695 YP_748109.1 CDS Neut_1912 NC_008344.1 2024969 2025319 D PFAM: histidine triad (HIT) protein; KEGG: neu:NE0640 HIT (histidine triad) family; histidine triad (HIT) protein 2024969..2025319 Nitrosomonas eutropha C91 4273696 YP_748110.1 CDS tatA NC_008344.1 2025339 2025572 D TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A 2025339..2025572 Nitrosomonas eutropha C91 4273697 YP_748111.1 CDS Neut_1914 NC_008344.1 2025658 2026050 D TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: neu:NE0638 mttA/Hcf106 family; twin-arginine translocation protein subunit TatB 2025658..2026050 Nitrosomonas eutropha C91 4273698 YP_748112.1 CDS Neut_1915 NC_008344.1 2026141 2026917 D TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: neu:NE0637 uncharacterized protein family UPF0032; Sec-independent protein translocase subunit TatC 2026141..2026917 Nitrosomonas eutropha C91 4273699 YP_748113.1 CDS Neut_1916 NC_008344.1 2027388 2029226 D TIGRFAM: TonB-dependent vitamin B12 receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: neu:NE0636 TonB-dependent receptor protein; TonB-dependent vitamin B12 receptor 2027388..2029226 Nitrosomonas eutropha C91 4273700 YP_748114.1 CDS Neut_1917 NC_008344.1 2029236 2029826 D KEGG: neu:NE0635 hypothetical protein; hypothetical protein 2029236..2029826 Nitrosomonas eutropha C91 4273701 YP_748115.1 CDS Neut_1918 NC_008344.1 2029826 2030434 D KEGG: neu:NE0634 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; cob(I)alamin adenosyltransferase 2029826..2030434 Nitrosomonas eutropha C91 4273702 YP_748116.1 CDS Neut_1919 NC_008344.1 2030938 2031276 D KEGG: neu:NE0633 hypothetical protein; hypothetical protein 2030938..2031276 Nitrosomonas eutropha C91 4273341 YP_748117.1 CDS Neut_1920 NC_008344.1 2032210 2033016 D TIGRFAM: PEP motif putative anchor-like; KEGG: nmu:Nmul_A1190 hypothetical protein; PEP motif-containing protein 2032210..2033016 Nitrosomonas eutropha C91 4273342 YP_748118.1 CDS metG NC_008344.1 2033051 2035156 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(2033051..2035156) Nitrosomonas eutropha C91 4273343 YP_748119.1 CDS Neut_1922 NC_008344.1 2035262 2036347 D PFAM: protein of unknown function DUF59; KEGG: neu:NE0624 domain of unknown function DUF59; hypothetical protein 2035262..2036347 Nitrosomonas eutropha C91 4273344 YP_748120.1 CDS dcd NC_008344.1 2036360 2036926 D Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 2036360..2036926 Nitrosomonas eutropha C91 4273345 YP_748121.1 CDS Neut_1924 NC_008344.1 2037007 2037348 R PFAM: Cupin 2, conserved barrel domain protein; KEGG: neu:NE0622 hypothetical protein; cupin complement(2037007..2037348) Nitrosomonas eutropha C91 4273346 YP_748122.1 CDS Neut_1925 NC_008344.1 2037393 2038163 R PFAM: protein of unknown function DUF980; KEGG: neu:NE0619 hypothetical protein; hypothetical protein complement(2037393..2038163) Nitrosomonas eutropha C91 4273347 YP_748123.1 CDS Neut_1926 NC_008344.1 2038364 2041102 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; KEGG: neu:NE0618 mono valent cation-transporting P-type ATPase; P-type HAD superfamily ATPase 2038364..2041102 Nitrosomonas eutropha C91 4273348 YP_748124.1 CDS Neut_1927 NC_008344.1 2041349 2041726 D hypothetical protein 2041349..2041726 Nitrosomonas eutropha C91 4273349 YP_748125.1 CDS Neut_1928 NC_008344.1 2041920 2042915 R PFAM: protein of unknown function DUF450; KEGG: xcb:XC_4199 hypothetical protein; hypothetical protein complement(2041920..2042915) Nitrosomonas eutropha C91 4273350 YP_748126.1 CDS Neut_1929 NC_008344.1 2042980 2043450 R PFAM: transposase, IS4 family protein; KEGG: xcb:XC_2134 IS1480 transposase; transposase, IS4 family protein complement(2042980..2043450) Nitrosomonas eutropha C91 4273351 YP_748127.1 CDS Neut_1931 NC_008344.1 2043923 2044843 D PFAM: Integrase, catalytic region; KEGG: nwi:Nwi_2917 integrase, catalytic region; integrase catalytic subunit 2043923..2044843 Nitrosomonas eutropha C91 4273353 YP_748128.1 CDS Neut_1932 NC_008344.1 2045009 2047195 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: neu:NE0617 TonB-dependent receptor protein; TonB-dependent receptor complement(2045009..2047195) Nitrosomonas eutropha C91 4273354 YP_748129.1 CDS Neut_1933 NC_008344.1 2047388 2047996 D PFAM: regulatory protein, TetR; KEGG: eba:ebA6247 transcriptional regulator, TetR family; TetR family transcriptional regulator 2047388..2047996 Nitrosomonas eutropha C91 4273355 YP_748130.1 CDS Neut_1934 NC_008344.1 2047993 2049144 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: tbd:Tbd_1361 RND efflux membrane protein; RND family efflux transporter MFP subunit 2047993..2049144 Nitrosomonas eutropha C91 4273356 YP_748131.1 CDS Neut_1935 NC_008344.1 2049141 2050340 D PFAM: protein of unknown function DUF214; KEGG: tbd:Tbd_1360 ABC transporter permease protein; hypothetical protein 2049141..2050340 Nitrosomonas eutropha C91 4273357 YP_748132.1 CDS Neut_1936 NC_008344.1 2050348 2051151 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tbd:Tbd_1359 ABC transporter ATPase; ABC transporter-like protein 2050348..2051151 Nitrosomonas eutropha C91 4273358 YP_748133.1 CDS Neut_1937 NC_008344.1 2051133 2051699 R KEGG: tcx:Tcr_1078 hypothetical protein; hypothetical protein complement(2051133..2051699) Nitrosomonas eutropha C91 4273324 YP_748134.1 CDS Neut_1938 NC_008344.1 2051772 2052221 R PFAM: ferric-uptake regulator; KEGG: neu:NE0616 leucine-rich repeat:ferric uptake regulator family; Fur family ferric uptake regulator complement(2051772..2052221) Nitrosomonas eutropha C91 4273325 YP_748135.1 CDS Neut_1939 NC_008344.1 2052432 2052914 D PFAM: SmpA/OmlA domain protein; KEGG: neu:NE0615 possible outer membrane lipoprotein OmlA; SmpA/OmlA domain-containing protein 2052432..2052914 Nitrosomonas eutropha C91 4273326 YP_748136.1 CDS Neut_1940 NC_008344.1 2052911 2053717 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 2052911..2053717 Nitrosomonas eutropha C91 4273327 YP_748137.1 CDS Neut_1941 NC_008344.1 2053931 2055439 R PFAM: protein of unknown function DUF853, NPT hydrolase putative; SMART: AAA ATPase; KEGG: pol:Bpro_1966 protein of unknown function DUF853, NPT hydrolase putative; hypothetical protein complement(2053931..2055439) Nitrosomonas eutropha C91 4273328 YP_748138.1 CDS Neut_1942 NC_008344.1 2055692 2056042 D KEGG: plu:plu4319 type I site-specific deoxyribonuclease HsdM; type I site-specific deoxyribonuclease HsdM 2055692..2056042 Nitrosomonas eutropha C91 4273329 YP_748139.1 CDS Neut_1943 NC_008344.1 2056039 2056197 D KEGG: dde:Dde_2867 mobilization/cell filamentation proteins-like; mobilization/cell filamentation-like protein 2056039..2056197 Nitrosomonas eutropha C91 4273330 YP_748140.1 CDS Neut_1945 NC_008344.1 2056850 2058331 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: sat:SYN_00851 type I secretion outer membrane protein; RND efflux system, outer membrane lipoprotein, NodT family protein 2056850..2058331 Nitrosomonas eutropha C91 4273332 YP_748141.1 CDS Neut_1946 NC_008344.1 2058495 2059559 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dde:Dde_0402 secretion protein HlyD; RND family efflux transporter MFP subunit 2058495..2059559 Nitrosomonas eutropha C91 4273333 YP_748142.1 CDS Neut_1947 NC_008344.1 2059563 2062427 D TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: noc:Noc_1130 hydrophobe/amphiphile efflux-1 HAE1; transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein 2059563..2062427 Nitrosomonas eutropha C91 4273334 YP_748143.1 CDS Neut_1948 NC_008344.1 2062418 2062678 D KEGG: vpa:VPA0471 putative multidrug efflux membrane fusion protein; multidrug efflux membrane fusion protein 2062418..2062678 Nitrosomonas eutropha C91 4273335 YP_748144.1 CDS apaH NC_008344.1 2062874 2063674 D hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 2062874..2063674 Nitrosomonas eutropha C91 4273336 YP_748145.1 CDS Neut_1950 NC_008344.1 2063628 2064425 R PFAM: phospholipid/glycerol acyltransferase; KEGG: neu:NE0612 phospholipid and glycerol acyltransferase (from 'motifs_6.msf'); phospholipid/glycerol acyltransferase complement(2063628..2064425) Nitrosomonas eutropha C91 4273337 YP_748146.1 CDS Neut_1951 NC_008344.1 2064498 2065433 R PFAM: PfkB domain protein; KEGG: neu:NE0611 PfkB family of carbohydrate kinase; ribokinase-like domain-containing protein complement(2064498..2065433) Nitrosomonas eutropha C91 4273338 YP_748147.1 CDS Neut_1952 NC_008344.1 2065465 2066916 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein; glycine dehydrogenase subunit 2 complement(2065465..2066916) Nitrosomonas eutropha C91 4273339 YP_748148.1 CDS Neut_1953 NC_008344.1 2066991 2068346 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein; glycine dehydrogenase subunit 1 complement(2066991..2068346) Nitrosomonas eutropha C91 4273340 YP_748149.1 CDS Neut_1954 NC_008344.1 2068556 2068945 R part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H complement(2068556..2068945) Nitrosomonas eutropha C91 4273306 YP_748150.1 CDS gcvT NC_008344.1 2069016 2070107 R catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T complement(2069016..2070107) Nitrosomonas eutropha C91 4273307 YP_748151.1 CDS Neut_1956 NC_008344.1 2070845 2071750 R catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase complement(2070845..2071750) Nitrosomonas eutropha C91 4273308 YP_748152.1 CDS Neut_1957 NC_008344.1 2071924 2073096 D catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 2071924..2073096 Nitrosomonas eutropha C91 4273309 YP_748153.1 CDS Neut_1958 NC_008344.1 2073311 2073664 D hypothetical protein 2073311..2073664 Nitrosomonas eutropha C91 4273310 YP_748154.1 CDS Neut_1959 NC_008344.1 2073785 2074558 D PFAM: TraT complement resistance family protein; KEGG: eba:p1B335 TraT complement resistance protein precursor; TraT complement resistance family protein 2073785..2074558 Nitrosomonas eutropha C91 4273311 YP_748155.1 CDS Neut_1960 NC_008344.1 2074616 2074942 D hypothetical protein 2074616..2074942 Nitrosomonas eutropha C91 4273312 YP_748156.1 CDS Neut_1961 NC_008344.1 2075882 2076913 D PFAM: Integrase, catalytic region; KEGG: nwi:Nwi_2917 integrase, catalytic region; integrase catalytic subunit 2075882..2076913 Nitrosomonas eutropha C91 4273313 YP_748157.1 CDS Neut_1962 NC_008344.1 2076860 2078965 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: tbd:Tbd_0715 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(2076860..2078965) Nitrosomonas eutropha C91 4273314 YP_748158.1 CDS Neut_1964 NC_008344.1 2079984 2080640 R PFAM: protein of unknown function DUF208; KEGG: neu:NE1881 DUF208; hypothetical protein complement(2079984..2080640) Nitrosomonas eutropha C91 4273316 YP_748159.1 CDS Neut_1965 NC_008344.1 2080808 2082091 D KEGG: neu:NE1882 hypothetical protein; hypothetical protein 2080808..2082091 Nitrosomonas eutropha C91 4273317 YP_748160.1 CDS Neut_1966 NC_008344.1 2082095 2082625 D KEGG: neu:NE1883 hypothetical protein; hypothetical protein 2082095..2082625 Nitrosomonas eutropha C91 4273318 YP_748161.1 CDS Neut_1967 NC_008344.1 2082628 2083329 D PFAM: ATP dependent DNA ligase; KEGG: neu:NE1884 possible homolog of eukaryotic DNA ligase III; ATP dependent DNA ligase 2082628..2083329 Nitrosomonas eutropha C91 4273319 YP_748162.1 CDS Neut_1968 NC_008344.1 2083379 2083753 D PFAM: protein of unknown function DUF202; KEGG: neu:NE1885 DUF202; hypothetical protein 2083379..2083753 Nitrosomonas eutropha C91 4273320 YP_748163.1 CDS Neut_1969 NC_008344.1 2083800 2085257 R PFAM: Catalase domain protein; KEGG: neu:NE1886 catalase; catalase complement(2083800..2085257) Nitrosomonas eutropha C91 4273321 YP_748164.1 CDS Neut_1970 NC_008344.1 2085284 2086630 R KEGG: neu:NE1887 hypothetical protein; hypothetical protein complement(2085284..2086630) Nitrosomonas eutropha C91 4273322 YP_748165.1 CDS Neut_1971 NC_008344.1 2086665 2087465 R PFAM: protein of unknown function DUF81; KEGG: neu:NE1888 domain of unknown function DUF81; hypothetical protein complement(2086665..2087465) Nitrosomonas eutropha C91 4273323 YP_748166.1 CDS Neut_1972 NC_008344.1 2087543 2087998 R PFAM: protein of unknown function DUF55; KEGG: neu:NE1889 hypothetical protein; hypothetical protein complement(2087543..2087998) Nitrosomonas eutropha C91 4273289 YP_748167.1 CDS Neut_1974 NC_008344.1 2089922 2090740 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: neu:NE1333 short-chain dehydrogenase/reductase (SDR) superfamily; short-chain dehydrogenase/reductase SDR complement(2089922..2090740) Nitrosomonas eutropha C91 4273291 YP_748168.1 CDS Neut_1975 NC_008344.1 2090741 2092219 R PFAM: glycosyl transferase, family 2; KEGG: neu:NE1334 glycosyl transferase, family 2; cellulose synthase complement(2090741..2092219) Nitrosomonas eutropha C91 4273292 YP_748169.1 CDS Neut_1976 NC_008344.1 2092221 2093306 R KEGG: neu:NE1335 possible spore protein [UI:20467420]; spore protein complement(2092221..2093306) Nitrosomonas eutropha C91 4273293 YP_748170.1 CDS Neut_1977 NC_008344.1 2093339 2094646 R PFAM: glycosyl transferase, group 1; KEGG: neu:NE1336 glycosyl transferase group 1; group 1 glycosyl transferase complement(2093339..2094646) Nitrosomonas eutropha C91 4273294 YP_748171.1 CDS Neut_1980 NC_008344.1 2095796 2096266 R PFAM: transposase, IS4 family protein; KEGG: eba:p2A101 putative transposase, fragment; transposase, IS4 family protein complement(2095796..2096266) Nitrosomonas eutropha C91 4273297 YP_748172.1 CDS Neut_1982 NC_008344.1 2097048 2098127 R KEGG: neu:NE1342 possible glycosyltransferase; glycosyltransferase complement(2097048..2098127) Nitrosomonas eutropha C91 4273299 YP_748173.1 CDS Neut_1983 NC_008344.1 2098161 2098463 R PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: neu:NE1339 H-NS histone family; histone family protein nucleoid-structuring protein H-NS complement(2098161..2098463) Nitrosomonas eutropha C91 4273300 YP_748174.1 CDS Neut_1984 NC_008344.1 2098971 2099213 R KEGG: gvi:gsl1627 putative transposase; transposase complement(2098971..2099213) Nitrosomonas eutropha C91 4273301 YP_748175.1 CDS Neut_1985 NC_008344.1 2099897 2100652 D hypothetical protein 2099897..2100652 Nitrosomonas eutropha C91 4273302 YP_748176.1 CDS Neut_1986 NC_008344.1 2101540 2102901 D KEGG: neu:NE0510 hypothetical protein; hypothetical protein 2101540..2102901 Nitrosomonas eutropha C91 4273303 YP_748177.1 CDS Neut_1987 NC_008344.1 2103017 2103631 D PFAM: electron transport protein SCO1/SenC; KEGG: neu:NE0509 SCO1/SenC; electron transport protein SCO1/SenC 2103017..2103631 Nitrosomonas eutropha C91 4273304 YP_748178.1 CDS Neut_1988 NC_008344.1 2103628 2104263 D KEGG: neu:NE0508 hypothetical protein; hypothetical protein 2103628..2104263 Nitrosomonas eutropha C91 4273305 YP_748179.1 CDS Neut_1990 NC_008344.1 2104841 2105128 R KEGG: neu:NE2107 hypothetical protein; hypothetical protein complement(2104841..2105128) Nitrosomonas eutropha C91 4273272 YP_748180.1 CDS Neut_1991 NC_008344.1 2105299 2105682 R TIGRFAM: conserved hypothetical protein; KEGG: neu:NE2106 hypothetical protein; hypothetical protein complement(2105299..2105682) Nitrosomonas eutropha C91 4273273 YP_748181.1 CDS Neut_1992 NC_008344.1 2106008 2106928 D PFAM: Integrase, catalytic region; KEGG: nwi:Nwi_2917 integrase, catalytic region; integrase catalytic subunit 2106008..2106928 Nitrosomonas eutropha C91 4273274 YP_748182.1 CDS Neut_1994 NC_008344.1 2107298 2107768 D PFAM: transposase, IS4 family protein; KEGG: xcb:XC_2134 IS1480 transposase; transposase, IS4 family protein 2107298..2107768 Nitrosomonas eutropha C91 4273276 YP_748183.1 CDS Neut_1995 NC_008344.1 2107910 2110039 R catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase complement(2107910..2110039) Nitrosomonas eutropha C91 4273277 YP_748184.1 CDS Neut_1996 NC_008344.1 2110378 2111403 R PFAM: fructose-bisphosphate aldolase, class-I; KEGG: pol:Bpro_4741 fructose-bisphosphate aldolase; fructose-bisphosphate aldolase complement(2110378..2111403) Nitrosomonas eutropha C91 4273278 YP_748185.1 CDS Neut_1997 NC_008344.1 2111549 2111830 R KEGG: nmu:Nmul_A0265 dTDP-4-dehydrorhamnose reductase; hypothetical protein complement(2111549..2111830) Nitrosomonas eutropha C91 4273279 YP_748186.1 CDS Neut_1998 NC_008344.1 2112238 2112420 D PFAM: helix-turn-helix domain protein; KEGG: tde:TDE1647 DNA-binding protein; XRE family transcriptional regulator protein 2112238..2112420 Nitrosomonas eutropha C91 4273280 YP_748187.1 CDS Neut_1999 NC_008344.1 2112713 2113054 D PFAM: protein of unknown function DUF497; KEGG: noc:Noc_1098 protein of unknown function DUF497; hypothetical protein 2112713..2113054 Nitrosomonas eutropha C91 4273281 YP_748188.1 CDS Neut_2000 NC_008344.1 2113044 2113325 D KEGG: noc:Noc_1099 hypothetical protein; hypothetical protein 2113044..2113325 Nitrosomonas eutropha C91 4273282 YP_748189.1 CDS Neut_2001 NC_008344.1 2113668 2114516 R PFAM: Integrase, catalytic region; KEGG: pol:Bpro_5204 integrase, catalytic region; integrase catalytic subunit complement(2113668..2114516) Nitrosomonas eutropha C91 4273283 YP_748190.1 CDS Neut_2002 NC_008344.1 2114573 2114896 R PFAM: transposase IS3/IS911 family protein; KEGG: mca:MCA1895 ISMca3, transposase, OrfA; transposase IS3/IS911 family protein complement(2114573..2114896) Nitrosomonas eutropha C91 4273284 YP_748191.1 CDS Neut_2003 NC_008344.1 2114880 2116862 R PFAM: beta-ketoacyl synthase; KEGG: neu:NE1389 putative type I polyketide synthase WcbR; beta-ketoacyl synthase complement(2114880..2116862) Nitrosomonas eutropha C91 4273285 YP_748192.1 CDS Neut_2004 NC_008344.1 2117485 2119068 R catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase complement(2117485..2119068) Nitrosomonas eutropha C91 4273286 YP_748193.1 CDS Neut_2005 NC_008344.1 2119318 2120238 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 2119318..2120238 Nitrosomonas eutropha C91 4273287 YP_748194.1 CDS Neut_2006 NC_008344.1 2120263 2120472 D KEGG: neu:NE1894 hypothetical protein; hypothetical protein 2120263..2120472 Nitrosomonas eutropha C91 4273288 YP_748195.1 CDS Neut_2007 NC_008344.1 2120536 2121915 D PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: neu:NE1895 phosphoglucomutase and phosphomannomutase family; phosphomannomutase 2120536..2121915 Nitrosomonas eutropha C91 4273254 YP_748196.1 CDS Neut_2008 NC_008344.1 2121952 2123559 D KEGG: neu:NE1896 carbon-nitrogen hydrolase:NAD+ synthase; TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD+ synthase; NAD+ synthetase 2121952..2123559 Nitrosomonas eutropha C91 4273255 YP_748197.1 CDS Neut_2009 NC_008344.1 2123715 2125229 D PFAM: peptidase M48, Ste24p; KEGG: neu:NE1897 peptidase family M48; peptidase M48, Ste24p 2123715..2125229 Nitrosomonas eutropha C91 4273256 YP_748198.1 CDS Neut_2010 NC_008344.1 2125309 2126454 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: neu:NE1898 conserved hypothetical protein; RND family efflux transporter MFP subunit 2125309..2126454 Nitrosomonas eutropha C91 4273257 YP_748199.1 CDS Neut_2011 NC_008344.1 2126465 2127232 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: neu:NE1899 ATPase component ABC-type (unclassified) transport system; ABC transporter-like protein 2126465..2127232 Nitrosomonas eutropha C91 4273258 YP_748200.1 CDS Neut_2012 NC_008344.1 2127229 2128452 D PFAM: protein of unknown function DUF214; KEGG: neu:NE1900 DUF214; hypothetical protein 2127229..2128452 Nitrosomonas eutropha C91 4273259 YP_748201.1 CDS Neut_2013 NC_008344.1 2128968 2130425 D produces ATP from ADP in the presence of a proton gradient across the membrane; the beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 2128968..2130425 Nitrosomonas eutropha C91 4273260 YP_748202.1 CDS Neut_2014 NC_008344.1 2130422 2130832 D PFAM: H+-transporting two-sector ATPase, delta/epsilon subunit; KEGG: sat:SYN_02098 F0F1-type ATP synthase, epsilon subunit; H+-transporting two-sector ATPase subunit delta/epsilon 2130422..2130832 Nitrosomonas eutropha C91 4273261 YP_748203.1 CDS Neut_2015 NC_008344.1 2130829 2131110 D TIGRFAM: F0F1-ATPase subunit, putative; KEGG: sat:SYN_02099 hypothetical membrane protein; F0F1-ATPase subunit 2130829..2131110 Nitrosomonas eutropha C91 4273262 YP_748204.1 CDS Neut_2016 NC_008344.1 2131117 2131449 D hypothetical protein 2131117..2131449 Nitrosomonas eutropha C91 4273263 YP_748205.1 CDS Neut_2017 NC_008344.1 2131471 2132163 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 2131471..2132163 Nitrosomonas eutropha C91 4273264 YP_748206.1 CDS Neut_2018 NC_008344.1 2132166 2132444 D produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 2132166..2132444 Nitrosomonas eutropha C91 4273265 YP_748207.1 CDS Neut_2019 NC_008344.1 2132451 2133221 D PFAM: H+-transporting two-sector ATPase, B/B' subunit; KEGG: mac:MA2435 H(+)-transporting ATP synthase, subunit B; H+-transporting two-sector ATPase subunit B/B' 2132451..2133221 Nitrosomonas eutropha C91 4273266 YP_748208.1 CDS Neut_2020 NC_008344.1 2133234 2134784 D KEGG: rfr:Rfer_1168 ATP synthase F1, alpha subunit; TIGRFAM: ATP synthase F1, alpha subunit; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; H+-transporting two-sector ATPase, alpha/beta subunit domain protein; ATP synthase F1 subunit alpha 2133234..2134784 Nitrosomonas eutropha C91 4273267 YP_748209.1 CDS Neut_2021 NC_008344.1 2134861 2135658 D PFAM: H+-transporting two-sector ATPase, gamma subunit; KEGG: plt:Plut_1071 H(+)-transporting ATP synthase, subunit gamma; H+-transporting two-sector ATPase subunit gamma 2134861..2135658 Nitrosomonas eutropha C91 4273268 YP_748210.1 CDS Neut_2022 NC_008344.1 2136395 2139037 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 2136395..2139037 Nitrosomonas eutropha C91 4273269 YP_748211.1 CDS Neut_2023 NC_008344.1 2139072 2139551 R KEGG: neu:NE1706 FKBP-type peptidyl-prolyl cis-trans isomerase (PPIase); FKBP-type peptidyl-prolyl cis-trans isomerase complement(2139072..2139551) Nitrosomonas eutropha C91 4273270 YP_748212.1 CDS rnhB NC_008344.1 2139707 2140366 R RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII complement(2139707..2140366) Nitrosomonas eutropha C91 4273236 YP_748213.1 CDS fabZ NC_008344.1 2140345 2140788 R in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase complement(2140345..2140788) Nitrosomonas eutropha C91 4273237 YP_748214.1 CDS Neut_2026 NC_008344.1 2140821 2141384 R PFAM: outer membrane chaperone Skp (OmpH); KEGG: neu:NE1709 putative transmembrane protein; outer membrane chaperone Skp complement(2140821..2141384) Nitrosomonas eutropha C91 4273238 YP_748215.1 CDS Neut_2027 NC_008344.1 2141410 2143686 R PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: neu:NE1710 bacterial surface antigen (D15); surface antigen (D15) complement(2141410..2143686) Nitrosomonas eutropha C91 4273239 YP_748216.1 CDS Neut_2028 NC_008344.1 2143689 2145056 R TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: neu:NE1711 membrane-associated Zn-dependent proteases 1; membrane-associated zinc metalloprotease complement(2143689..2145056) Nitrosomonas eutropha C91 4273240 YP_748217.1 CDS Neut_2029 NC_008344.1 2145075 2146316 R catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(2145075..2146316) Nitrosomonas eutropha C91 4273241 YP_748218.1 CDS Neut_2030 NC_008344.1 2146313 2147140 R PFAM: phosphatidate cytidylyltransferase; KEGG: neu:NE1713 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase complement(2146313..2147140) Nitrosomonas eutropha C91 4273242 YP_748219.1 CDS Neut_2031 NC_008344.1 2147175 2147966 R KEGG: neu:NE1714 undecaprenyl pyrophosphate synthetase family; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase complement(2147175..2147966) Nitrosomonas eutropha C91 4273243 YP_748220.1 CDS frr NC_008344.1 2147970 2148527 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(2147970..2148527) Nitrosomonas eutropha C91 4273244 YP_748221.1 CDS pyrH NC_008344.1 2148628 2149341 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(2148628..2149341) Nitrosomonas eutropha C91 4273245 YP_748222.1 CDS tsf NC_008344.1 2149892 2150776 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(2149892..2150776) Nitrosomonas eutropha C91 4273246 YP_748223.1 CDS rpsB NC_008344.1 2150849 2151604 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(2150849..2151604) Nitrosomonas eutropha C91 4273247 YP_748224.1 CDS Neut_2036 NC_008344.1 2151819 2152547 R PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: neu:NE1719 putative anaerobic transcriptional regulatory protein; Crp family transcriptional regulator complement(2151819..2152547) Nitrosomonas eutropha C91 4273248 YP_748225.1 CDS Neut_2037 NC_008344.1 2152609 2152920 R PFAM: cytochrome c, class I; KEGG: neu:NE1720 cytochrome c, class I; cytochrome c, class I complement(2152609..2152920) Nitrosomonas eutropha C91 4273249 YP_748226.1 CDS Neut_2038 NC_008344.1 2153158 2155170 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: neu:NE1721 putative iron complex outermembrane recepter protein; TonB-dependent receptor complement(2153158..2155170) Nitrosomonas eutropha C91 4273250 YP_748227.1 CDS Neut_2039 NC_008344.1 2155980 2156867 D PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: neu:NE1724 PHP domain N-terminal region:PHP domain C-terminal region; phosphotransferase domain-containing protein 2155980..2156867 Nitrosomonas eutropha C91 4273251 YP_748228.1 CDS Neut_2040 NC_008344.1 2156990 2157622 D TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain; KEGG: neu:NE1725 SUA5/YciO/YrdC family:SUA5/YciO/YrdC/YwlC protein family; Sua5/YciO/YrdC/YwlC family protein 2156990..2157622 Nitrosomonas eutropha C91 4273252 YP_748229.1 CDS Neut_2041 NC_008344.1 2157615 2158280 D PFAM: peptidase M50; KEGG: neu:NE1726 putative integral membrane transmembrane protein; peptidase M50 2157615..2158280 Nitrosomonas eutropha C91 4273253 YP_748230.1 CDS Neut_2042 NC_008344.1 2158356 2159558 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 2158356..2159558 Nitrosomonas eutropha C91 4273219 YP_748231.1 CDS Neut_2043 NC_008344.1 2159558 2160403 D PFAM: chromosome segregation and condensation protein ScpA; KEGG: neu:NE1728 putative segregation and condensation protein A; chromosome segregation and condensation protein ScpA 2159558..2160403 Nitrosomonas eutropha C91 4273220 YP_748232.1 CDS Neut_2044 NC_008344.1 2160369 2161019 D TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: neu:NE1729 putative segregation and condensation protein B; transcriptional regulator 2160369..2161019 Nitrosomonas eutropha C91 4273221 YP_748233.1 CDS Neut_2045 NC_008344.1 2161043 2162290 D TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: neu:NE1730 isocitrate dehydrogenase [NADP] oxidoreductase protein; isocitrate dehydrogenase 2161043..2162290 Nitrosomonas eutropha C91 4273222 YP_748234.1 CDS Neut_2046 NC_008344.1 2162429 2162632 R PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: nmu:Nmul_A2246 cold-shock DNA-binding domain protein; cold-shock DNA-binding domain-containing protein complement(2162429..2162632) Nitrosomonas eutropha C91 4273223 YP_748235.1 CDS clpS NC_008344.1 2163006 2163317 D involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 2163006..2163317 Nitrosomonas eutropha C91 4273224 YP_748236.1 CDS Neut_2048 NC_008344.1 2163319 2165589 D KEGG: neu:NE1733 ATP dependent protease, chaperonin; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding protein ClpA 2163319..2165589 Nitrosomonas eutropha C91 4273225 YP_748237.1 CDS Neut_2049 NC_008344.1 2165606 2166667 D PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: vch:VC0488 extracellular solute-binding protein, putative; TRAP dicarboxylate transporter- DctP subunit 2165606..2166667 Nitrosomonas eutropha C91 4273226 YP_748238.1 CDS pyrE NC_008344.1 2166695 2167423 D involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 2166695..2167423 Nitrosomonas eutropha C91 4273227 YP_748239.1 CDS Neut_2051 NC_008344.1 2167618 2168694 D KEGG: neu:NE1735 putative sulfonate binding protein precursor; sulfonate binding protein 2167618..2168694 Nitrosomonas eutropha C91 4273228 YP_748240.1 CDS Neut_2052 NC_008344.1 2168699 2169535 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: neu:NE1736 putative transport system permease; binding-protein-dependent transport system inner membrane protein 2168699..2169535 Nitrosomonas eutropha C91 4273229 YP_748241.1 CDS Neut_2053 NC_008344.1 2169540 2170361 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: neu:NE1737 nitrate/nitrite transport system ATP-binding protein; ABC transporter-like protein 2169540..2170361 Nitrosomonas eutropha C91 4273230 YP_748242.1 CDS Neut_2054 NC_008344.1 2170476 2173031 D KEGG: neu:NE0466 glycosyltransferase family 35; TIGRFAM: alpha-glucan phosphorylases; PFAM: glycosyl transferase, family 35; alpha-glucan phosphorylase 2170476..2173031 Nitrosomonas eutropha C91 4273231 YP_748243.1 CDS fliL NC_008344.1 2173344 2173826 D interacts with cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 2173344..2173826 Nitrosomonas eutropha C91 4273232 YP_748244.1 CDS Neut_2056 NC_008344.1 2173839 2174831 D PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: neu:NE0464 flagellar motor switch protein FliM; flagellar motor switch protein FliM 2173839..2174831 Nitrosomonas eutropha C91 4273233 YP_748245.1 CDS Neut_2057 NC_008344.1 2174860 2175333 D TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: neu:NE0463 possible flagellar motor switch FliN; flagellar motor switch protein FliN 2174860..2175333 Nitrosomonas eutropha C91 4273234 YP_748246.1 CDS Neut_2058 NC_008344.1 2175360 2175803 D PFAM: flagellar biosynthesis protein, FliO; KEGG: neu:NE0462 possible mopB flagellar biosynthesis; flagellar biosynthesis protein, FliO 2175360..2175803 Nitrosomonas eutropha C91 4273235 YP_748247.1 CDS fliP NC_008344.1 2175793 2176578 D FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 2175793..2176578 Nitrosomonas eutropha C91 4273203 YP_748248.1 CDS Neut_2060 NC_008344.1 2176594 2176869 D TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ, family 3; KEGG: neu:NE0460 bacterial export proteins, family 3 (FliQ); flagellar biosynthetic protein FliQ 2176594..2176869 Nitrosomonas eutropha C91 4273204 YP_748249.1 CDS Neut_2061 NC_008344.1 2176966 2177766 D TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: neu:NE0459 bacterial export protein, family 1; flagellar biosynthetic protein FliR 2176966..2177766 Nitrosomonas eutropha C91 4273205 YP_748250.1 CDS Neut_2062 NC_008344.1 2177926 2180022 D KEGG: neu:NE0458 hypothetical protein; hypothetical protein 2177926..2180022 Nitrosomonas eutropha C91 4273206 YP_748251.1 CDS Neut_2063 NC_008344.1 2180128 2181564 D KEGG: neu:NE0457 hypothetical protein; hypothetical protein 2180128..2181564 Nitrosomonas eutropha C91 4273207 YP_748252.1 CDS Neut_2064 NC_008344.1 2181627 2182586 R PFAM: alpha/beta hydrolase fold; KEGG: neu:NE0456 esterase/lipase/thioesterase family active site; alpha/beta hydrolase complement(2181627..2182586) Nitrosomonas eutropha C91 4273208 YP_748253.1 CDS Neut_2065 NC_008344.1 2182828 2184042 R catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase complement(2182828..2184042) Nitrosomonas eutropha C91 4273209 YP_748254.1 CDS Neut_2066 NC_008344.1 2184081 2185004 R catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase complement(2184081..2185004) Nitrosomonas eutropha C91 4273210 YP_748255.1 CDS Neut_2067 NC_008344.1 2185180 2186361 R catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine aminotransferase complement(2185180..2186361) Nitrosomonas eutropha C91 4273211 YP_748256.1 CDS Neut_2068 NC_008344.1 2186596 2187021 R KEGG: neu:NE1440 hypothetical protein; hypothetical protein complement(2186596..2187021) Nitrosomonas eutropha C91 4273212 YP_748257.1 CDS Neut_2069 NC_008344.1 2187047 2187292 R KEGG: neu:NE1441 hypothetical protein; hypothetical protein complement(2187047..2187292) Nitrosomonas eutropha C91 4273213 YP_748258.1 CDS Neut_2070 NC_008344.1 2187293 2189368 R KEGG: neu:NE1442 hypothetical protein; hypothetical protein complement(2187293..2189368) Nitrosomonas eutropha C91 4273214 YP_748259.1 CDS cysM NC_008344.1 2189374 2190252 R catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B complement(2189374..2190252) Nitrosomonas eutropha C91 4273215 YP_748260.1 CDS Neut_2072 NC_008344.1 2190384 2193176 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Sel1 domain protein repeat-containing protein; Tetratricopeptide domain protein; KEGG: neu:NE1444 TPR repeat; hypothetical protein complement(2190384..2193176) Nitrosomonas eutropha C91 4273216 YP_748261.1 CDS Neut_2073 NC_008344.1 2194555 2194839 D TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; KEGG: neu:NE0940 putative DNA transport competence protein, ComEA; helix-hairpin-helix repeat-containing competence protein ComEA 2194555..2194839 Nitrosomonas eutropha C91 4273187 YP_748262.1 CDS Neut_2074 NC_008344.1 2195446 2196033 R KEGG: neu:NE2060 hypothetical protein; hypothetical protein complement(2195446..2196033) Nitrosomonas eutropha C91 4273188 YP_748263.1 CDS Neut_2075 NC_008344.1 2196105 2196677 R KEGG: neu:NE2061 possible (U92432) ORF4 [Nitrosospira sp. NpAV]; hypothetical protein complement(2196105..2196677) Nitrosomonas eutropha C91 4273189 YP_748264.1 CDS Neut_2076 NC_008344.1 2196913 2198178 R PFAM: Ammonia monooxygenase/methane monooxygenase, subunit B; KEGG: neu:NE2062 ammonia monooxygenase, subunit B; ammonia monooxygenase/methane monooxygenase subunit B complement(2196913..2198178) Nitrosomonas eutropha C91 4273190 YP_748265.1 CDS Neut_2077 NC_008344.1 2198180 2199010 R PFAM: Ammonia monooxygenase/methane monooxygenase, subunit A; KEGG: neu:NE2063 ammonia monooxygenase, subunit A; ammonia monooxygenase/methane monooxygenase subunit A complement(2198180..2199010) Nitrosomonas eutropha C91 4273191 YP_748266.1 CDS Neut_2078 NC_008344.1 2199184 2199999 R PFAM: Ammonia monooxygenase/methane monooxygenase, subunit C; KEGG: neu:NE0945 ammonia monooxygenase subunit C2; ammonia monooxygenase/methane monooxygenase subunit C complement(2199184..2199999) Nitrosomonas eutropha C91 4273192 YP_748267.1 CDS Neut_2079 NC_008344.1 2200535 2201107 R KEGG: neu:NE2127 CDP-diacylglycerol--glycerol-3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(2200535..2201107) Nitrosomonas eutropha C91 4273193 YP_748268.1 CDS Neut_2080 NC_008344.1 2201238 2202737 R TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase, FGGY; KEGG: rru:Rru_A2009 glycerol kinase; glycerol kinase complement(2201238..2202737) Nitrosomonas eutropha C91 4273194 YP_748269.1 CDS Neut_2081 NC_008344.1 2202788 2203201 R PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: neu:NE2130 prokaryotic transcription elongation factor GreA/GreB; GreA/GreB family elongation factor complement(2202788..2203201) Nitrosomonas eutropha C91 4273195 YP_748270.1 CDS Neut_2082 NC_008344.1 2203488 2204210 R TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: neu:NE2131 response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding; two component transcriptional regulator, winged helix family protein complement(2203488..2204210) Nitrosomonas eutropha C91 4273196 YP_748271.1 CDS Neut_2084 NC_008344.1 2205818 2207065 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase complement(2205818..2207065) Nitrosomonas eutropha C91 4273199 YP_748272.1 CDS Neut_2085 NC_008344.1 2207317 2207901 R PFAM: Peptidoglycan-binding domain 1 protein; KEGG: neu:NE2133 putative peptidoglycan binding domain 1; peptidoglycan binding domain-containing protein complement(2207317..2207901) Nitrosomonas eutropha C91 4273200 YP_748273.1 CDS Neut_2086 NC_008344.1 2208376 2209551 D TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: neu:NE2134 acetate and butyrate kinase:acetate kinase; acetate kinase 2208376..2209551 Nitrosomonas eutropha C91 4273201 YP_748274.1 CDS Neut_2087 NC_008344.1 2209596 2211971 D PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: neu:NE2135 putative phosphoketolase; phosphoketolase 2209596..2211971 Nitrosomonas eutropha C91 4273202 YP_748275.1 CDS Neut_2088 NC_008344.1 2212195 2212305 R KEGG: eca:ECA2201 putative integrase; integrase complement(2212195..2212305) Nitrosomonas eutropha C91 4271970 YP_748276.1 CDS Neut_2089 NC_008344.1 2212552 2213646 R catalyzes the reversible formation of D-erythrose 4-phosphate and D-fructose 6-phosphate from sedoheptulose 7-phosphate and D-glyceraldehyde 3-phosphate; transaldolase complement(2212552..2213646) Nitrosomonas eutropha C91 4271971 YP_748277.1 CDS Neut_2090 NC_008344.1 2213893 2214402 D PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: neu:NE2138 sigma factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 2213893..2214402 Nitrosomonas eutropha C91 4271972 YP_748278.1 CDS Neut_2091 NC_008344.1 2214409 2215371 D PFAM: FecR protein; KEGG: neu:NE2139 putative transmembrane sensor; FecR protein 2214409..2215371 Nitrosomonas eutropha C91 4271973 YP_748279.1 CDS Neut_2092 NC_008344.1 2215450 2217747 D PFAM: TonB-dependent receptor; Secretin/TonB, short N-terminal domain; TonB-dependent receptor, plug; KEGG: neu:NE2140 TonB-dependent receptor protein; TonB-dependent receptor 2215450..2217747 Nitrosomonas eutropha C91 4271974 YP_748280.1 CDS Neut_2093 NC_008344.1 2217765 2218295 R KEGG: neu:NE2145 hypothetical protein; hypothetical protein complement(2217765..2218295) Nitrosomonas eutropha C91 4271975 YP_748281.1 CDS Neut_2094 NC_008344.1 2218307 2218651 R KEGG: neu:NE2146 hypothetical protein; hypothetical protein complement(2218307..2218651) Nitrosomonas eutropha C91 4271976 YP_748282.1 CDS Neut_2095 NC_008344.1 2218627 2220009 R PFAM: peptidase M24; peptidase M24B, X-Pro dipeptidase/aminopeptidase domain protein; KEGG: neu:NE2147 metallopeptidase family M24; peptidase M24 complement(2218627..2220009) Nitrosomonas eutropha C91 4271977 YP_748283.1 CDS Neut_2096 NC_008344.1 2220127 2220807 D PFAM: ribulose-phosphate 3-epimerase; KEGG: neu:NE2148 ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase 2220127..2220807 Nitrosomonas eutropha C91 4271978 YP_748284.1 CDS Neut_2097 NC_008344.1 2220822 2221544 D catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase 2220822..2221544 Nitrosomonas eutropha C91 4271979 YP_748285.1 CDS Neut_2098 NC_008344.1 2221654 2223141 D with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 2221654..2223141 Nitrosomonas eutropha C91 4271980 YP_748286.1 CDS Neut_2099 NC_008344.1 2223176 2223604 R KEGG: neu:NE2151 hypothetical protein; hypothetical protein complement(2223176..2223604) Nitrosomonas eutropha C91 4271981 YP_748287.1 CDS Neut_2100 NC_008344.1 2223632 2223976 R KEGG: neu:NE2152 hypothetical protein; hypothetical protein complement(2223632..2223976) Nitrosomonas eutropha C91 4271982 YP_748288.1 CDS Neut_2101 NC_008344.1 2224080 2224739 D PFAM: transcriptional regulator PadR family protein; Helix-turn-helix, type 11 domain protein; KEGG: neu:NE2153 hypothetical protein; transcriptional regulator 2224080..2224739 Nitrosomonas eutropha C91 4271983 YP_748289.1 CDS Neut_2102 NC_008344.1 2224848 2226029 D PFAM: protein of unknown function DUF1597; KEGG: neu:NE2154 hypothetical protein; hypothetical protein 2224848..2226029 Nitrosomonas eutropha C91 4271984 YP_748290.1 CDS Neut_2103 NC_008344.1 2226096 2227865 R TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: biotin/lipoyl attachment domain-containing protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: neu:NE2157 dihydrolipoamide dehydrogenase; dihydrolipoamide dehydrogenase complement(2226096..2227865) Nitrosomonas eutropha C91 4271985 YP_748291.1 CDS proA NC_008344.1 2227870 2229138 R Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase complement(2227870..2229138) Nitrosomonas eutropha C91 4271986 YP_748292.1 CDS Neut_2105 NC_008344.1 2229204 2229890 R PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: neu:NE2159 TPR repeat; hypothetical protein complement(2229204..2229890) Nitrosomonas eutropha C91 4271987 YP_748293.1 CDS Neut_2106 NC_008344.1 2229903 2231129 R KEGG: noc:Noc_1958 hypothetical protein; hypothetical protein complement(2229903..2231129) Nitrosomonas eutropha C91 4273602 YP_748294.1 CDS Neut_2107 NC_008344.1 2231141 2232013 R KEGG: neu:NE2161 esterase/lipase/thioesterase family active site; esterase/lipase/thioesterase family protein complement(2231141..2232013) Nitrosomonas eutropha C91 4273603 YP_748295.1 CDS Neut_2108 NC_008344.1 2232010 2232864 R KEGG: neu:NE2162 esterase/lipase/thioesterase family active site; esterase/lipase/thioesterase family protein complement(2232010..2232864) Nitrosomonas eutropha C91 4273604 YP_748296.1 CDS Neut_2109 NC_008344.1 2232871 2233122 R KEGG: neu:NE2163 hypothetical protein; hypothetical protein complement(2232871..2233122) Nitrosomonas eutropha C91 4273605 YP_748297.1 CDS Neut_2110 NC_008344.1 2233310 2234500 D KEGG: neu:NE2164 tetraacyldisaccharide-1-P 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; protein of unknown function DUF343; tetraacyldisaccharide 4'-kinase 2233310..2234500 Nitrosomonas eutropha C91 4273606 YP_748298.1 CDS Neut_2111 NC_008344.1 2234717 2234824 D KEGG: xoo:XOO4403 putative transposase; transposase 2234717..2234824 Nitrosomonas eutropha C91 4273607 YP_748299.1 CDS Neut_2112 NC_008344.1 2235004 2236176 R PFAM: glycosyl transferase, group 1; KEGG: neu:NE2266 glycosyl transferase group 1; group 1 glycosyl transferase complement(2235004..2236176) Nitrosomonas eutropha C91 4273608 YP_748300.1 CDS Neut_2113 NC_008344.1 2236160 2237287 R PFAM: glycosyl transferase, group 1; KEGG: neu:NE2267 glycosyl transferase group 1; group 1 glycosyl transferase complement(2236160..2237287) Nitrosomonas eutropha C91 4273609 YP_748301.1 CDS Neut_2114 NC_008344.1 2237288 2238292 R KEGG: neu:NE2268 hypothetical protein; hypothetical protein complement(2237288..2238292) Nitrosomonas eutropha C91 4273610 YP_748302.1 CDS Neut_2115 NC_008344.1 2238264 2239379 R PFAM: glycosyl transferase, group 1; KEGG: neu:NE2269 glycosyl transferase group 1; group 1 glycosyl transferase complement(2238264..2239379) Nitrosomonas eutropha C91 4273611 YP_748303.1 CDS Neut_2116 NC_008344.1 2239379 2240359 R KEGG: neu:NE2270 hypothetical protein; hypothetical protein complement(2239379..2240359) Nitrosomonas eutropha C91 4273612 YP_748304.1 CDS Neut_2117 NC_008344.1 2240426 2241667 R PFAM: polysaccharide biosynthesis protein; KEGG: cps:CPS_0582 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein complement(2240426..2241667) Nitrosomonas eutropha C91 4273613 YP_748305.1 CDS Neut_2118 NC_008344.1 2241907 2242296 D PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: neu:NE2278 low molecular weight phosphotyrosine protein phosphatase; protein tyrosine phosphatase 2241907..2242296 Nitrosomonas eutropha C91 4273614 YP_748306.1 CDS Neut_2119 NC_008344.1 2242349 2243566 D PFAM: polysaccharide export protein; KEGG: neu:NE2279 polysaccharide export protein; polysaccharide export protein 2242349..2243566 Nitrosomonas eutropha C91 4273615 YP_748307.1 CDS Neut_2120 NC_008344.1 2243620 2245863 D PFAM: lipopolysaccharide biosynthesis; KEGG: neu:NE2280 chain length determinant protein; lipopolysaccharide biosynthesis protein 2243620..2245863 Nitrosomonas eutropha C91 4273616 YP_748308.1 CDS Neut_2121 NC_008344.1 2245860 2247419 D PFAM: glycosyl transferase, family 4; KEGG: neu:NE2281 glycosyl transferase, family 4; glycosyl transferase 2245860..2247419 Nitrosomonas eutropha C91 4273617 YP_748309.1 CDS Neut_2122 NC_008344.1 2247489 2251061 R TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; KEGG: neu:NE2284 chromosome segregation ATPases; chromosome segregation protein SMC complement(2247489..2251061) Nitrosomonas eutropha C91 4273618 YP_748310.1 CDS Neut_2123 NC_008344.1 2251148 2251567 D NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 2251148..2251567 Nitrosomonas eutropha C91 4274165 YP_748311.1 CDS fumC NC_008344.1 2251616 2253016 D class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 2251616..2253016 Nitrosomonas eutropha C91 4274166 YP_748312.1 CDS Neut_2125 NC_008344.1 2253550 2254050 R KEGG: xoo:XOO2495 putative transposase; hypothetical protein complement(2253550..2254050) Nitrosomonas eutropha C91 4274167 YP_748313.1 CDS Neut_2126 NC_008344.1 2254378 2255607 R PFAM: EAL domain protein; KEGG: dar:Daro_3300 EAL; diguanylate phosphodiesterase complement(2254378..2255607) Nitrosomonas eutropha C91 4274168 YP_748314.1 CDS Neut_2127 NC_008344.1 2255621 2256430 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dar:Daro_0787 GGDEF; diguanylate cyclase complement(2255621..2256430) Nitrosomonas eutropha C91 4274169 YP_748315.1 CDS Neut_2128 NC_008344.1 2256673 2259054 R PFAM: type II secretion system protein E; GAF domain protein; General secretory system II, protein E domain protein; SMART: AAA ATPase; KEGG: neu:NE2290 bacterial type II secretion system protein E:GAF domain; GAF sensor protein complement(2256673..2259054) Nitrosomonas eutropha C91 4274170 YP_748316.1 CDS Neut_2129 NC_008344.1 2259067 2259831 R PFAM: beta-lactamase domain protein; KEGG: neu:NE2291 cAMP phosphodiesterase class-II:metallo-beta-lactamase superfamily; cyclic-AMP phosphodiesterase complement(2259067..2259831) Nitrosomonas eutropha C91 4274171 YP_748317.1 CDS Neut_2130 NC_008344.1 2259920 2260345 R PFAM: UspA domain protein; KEGG: neu:NE2292 universal stress protein (Usp); UspA domain-containing protein complement(2259920..2260345) Nitrosomonas eutropha C91 4274172 YP_748318.1 CDS Neut_2131 NC_008344.1 2260457 2261182 R PFAM: Integral membrane protein TerC; KEGG: neu:NE2293 hypothetical protein; integral membrane protein TerC complement(2260457..2261182) Nitrosomonas eutropha C91 4274173 YP_748319.1 CDS Neut_2132 NC_008344.1 2261185 2262348 R PFAM: Patatin; KEGG: neu:NE2294 patatin; patatin complement(2261185..2262348) Nitrosomonas eutropha C91 4274174 YP_748320.1 CDS Neut_2133 NC_008344.1 2262632 2263582 D KEGG: neu:NE2295 prolyl aminopeptidase; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold; proline iminopeptidase 2262632..2263582 Nitrosomonas eutropha C91 4274175 YP_748321.1 CDS bioD NC_008344.1 2263602 2264285 R DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase complement(2263602..2264285) Nitrosomonas eutropha C91 4274176 YP_748322.1 CDS Neut_2135 NC_008344.1 2264288 2265184 R TIGRFAM: biotin biosynthesis protein BioC; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: neu:NE2297 SAM (and some other nucleotide) binding motif; biotin biosynthesis protein BioC complement(2264288..2265184) Nitrosomonas eutropha C91 4274177 YP_748323.1 CDS Neut_2136 NC_008344.1 2265174 2265953 R TIGRFAM: bioH protein; PFAM: alpha/beta hydrolase fold; KEGG: neu:NE2298 possible BioH, catalyzes some early step in biotin biosynthesis; bioH protein complement(2265174..2265953) Nitrosomonas eutropha C91 4274178 YP_748324.1 CDS Neut_2137 NC_008344.1 2265934 2267097 R KEGG: neu:NE2299 aminotransferase class-I; TIGRFAM: 8-amino-7-oxononanoate synthase; PFAM: aminotransferase, class I and II; aminotransferase class-III; 8-amino-7-oxononanoate synthase complement(2265934..2267097) Nitrosomonas eutropha C91 4274179 YP_748325.1 CDS Neut_2138 NC_008344.1 2267103 2268119 R KEGG: neu:NE2300 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase complement(2267103..2268119) Nitrosomonas eutropha C91 4274180 YP_748326.1 CDS Neut_2139 NC_008344.1 2268190 2268900 D KEGG: neu:NE2301 hypothetical protein; hypothetical protein 2268190..2268900 Nitrosomonas eutropha C91 4274181 YP_748327.1 CDS Neut_2140 NC_008344.1 2268954 2269418 D TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: neu:NE2302 rRNA_methyl_2: RNA methyltransferase, TrmH family, group 2; RNA methyltransferase 2268954..2269418 Nitrosomonas eutropha C91 4274182 YP_748328.1 CDS Neut_2141 NC_008344.1 2269505 2270035 D PFAM: protein of unknown function DUF1130; KEGG: nha:Nham_3855 protein of unknown function DUF1130; hypothetical protein 2269505..2270035 Nitrosomonas eutropha C91 4272929 YP_748329.1 CDS Neut_2142 NC_008344.1 2270221 2271057 D TIGRFAM: methyltransferase FkbM family; KEGG: jan:Jann_4250 methyltransferase FkbM; methyltransferase FkbM family protein 2270221..2271057 Nitrosomonas eutropha C91 4272930 YP_748330.1 CDS Neut_2143 NC_008344.1 2271368 2272843 R catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase complement(2271368..2272843) Nitrosomonas eutropha C91 4272931 YP_748331.1 CDS Neut_2144 NC_008344.1 2272862 2273770 R similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate; 6-phosphogluconate dehydrogenase complement(2272862..2273770) Nitrosomonas eutropha C91 4272932 YP_748332.1 CDS Neut_2145 NC_008344.1 2273840 2274997 R PFAM: ADP-ribosylation/Crystallin J1; KEGG: neu:NE0396 hypothetical protein; ADP-ribosylation/crystallin J1 complement(2273840..2274997) Nitrosomonas eutropha C91 4272933 YP_748333.1 CDS Neut_2146 NC_008344.1 2275040 2275339 R PFAM: protein of unknown function DUF167; KEGG: neu:NE0395 DUF167; hypothetical protein complement(2275040..2275339) Nitrosomonas eutropha C91 4272934 YP_748334.1 CDS Neut_2147 NC_008344.1 2275339 2275899 R PFAM: protein of unknown function YGGT; KEGG: neu:NE0394 YGGT family; hypothetical protein complement(2275339..2275899) Nitrosomonas eutropha C91 4272935 YP_748335.1 CDS Neut_2148 NC_008344.1 2275972 2276784 R catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase complement(2275972..2276784) Nitrosomonas eutropha C91 4272936 YP_748336.1 CDS Neut_2149 NC_008344.1 2276864 2277079 R KEGG: neu:NE0392 hypothetical protein; hypothetical protein complement(2276864..2277079) Nitrosomonas eutropha C91 4272937 YP_748337.1 CDS Neut_2150 NC_008344.1 2277089 2277553 R KEGG: neu:NE0391 hypothetical protein; hypothetical protein complement(2277089..2277553) Nitrosomonas eutropha C91 4272938 YP_748338.1 CDS rpmH NC_008344.1 2277890 2278024 D in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 2277890..2278024 Nitrosomonas eutropha C91 4272939 YP_748339.1 CDS Neut_2152 NC_008344.1 2278061 2278426 D TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: neu:NE0389 bacterial ribonuclease P protein; ribonuclease P protein component 2278061..2278426 Nitrosomonas eutropha C91 4272940 YP_748340.1 CDS Neut_2153 NC_008344.1 2278423 2278632 D PFAM: protein of unknown function DUF37; KEGG: neu:NE0388 domain of unknown function DUF37; hypothetical protein 2278423..2278632 Nitrosomonas eutropha C91 4272941 YP_748341.1 CDS Neut_2154 NC_008344.1 2278723 2280591 D PFAM: 60 kDa inner membrane insertion protein; KEGG: neu:NE0387 60Kd inner membrane protein; 60 kDa inner membrane insertion protein 2278723..2280591 Nitrosomonas eutropha C91 4272942 YP_748342.1 CDS trmE NC_008344.1 2280638 2282017 D in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 2280638..2282017 Nitrosomonas eutropha C91 4272943 YP_748343.1 CDS rpsO NC_008344.1 2282244 2282513 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 2282244..2282513 Nitrosomonas eutropha C91 4272944 YP_748344.1 CDS Neut_2157 NC_008344.1 2282692 2284809 D PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein; KEGG: neu:NE0172 polyribonucleotide nucleotidyltransferase protein; polynucleotide phosphorylase/polyadenylase 2282692..2284809 Nitrosomonas eutropha C91 4272945 YP_748345.1 CDS Neut_2158 NC_008344.1 2285378 2286772 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: neu:NE0170 outer membrane efflux protein; RND efflux system, outer membrane lipoprotein, NodT family protein 2285378..2286772 Nitrosomonas eutropha C91 4272807 YP_748346.1 CDS Neut_2159 NC_008344.1 2286861 2288066 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: neu:NE0169 HlyD family secretion protein; RND family efflux transporter MFP subunit 2286861..2288066 Nitrosomonas eutropha C91 4272808 YP_748347.1 CDS Neut_2160 NC_008344.1 2288084 2291278 D TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: neu:NE0168 multidrug resistance protein MexB; transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein 2288084..2291278 Nitrosomonas eutropha C91 4272809 YP_748348.1 CDS Neut_2161 NC_008344.1 2291547 2291888 R KEGG: neu:NE0166 hypothetical protein; hypothetical protein complement(2291547..2291888) Nitrosomonas eutropha C91 4272810 YP_748349.1 CDS Neut_2162 NC_008344.1 2291917 2292657 R PFAM: protein of unknown function DUF71, ATP-binding region; KEGG: aba:Acid345_3648 protein of unknown function DUF71, ATPase; hypothetical protein complement(2291917..2292657) Nitrosomonas eutropha C91 4272811 YP_748350.1 CDS Neut_2163 NC_008344.1 2292691 2292981 R KEGG: neu:NE1559 hypothetical protein; hypothetical protein complement(2292691..2292981) Nitrosomonas eutropha C91 4272812 YP_748351.1 CDS engA NC_008344.1 2293323 2294729 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(2293323..2294729) Nitrosomonas eutropha C91 4272813 YP_748352.1 CDS Neut_2165 NC_008344.1 2294781 2296010 R PFAM: Pyrrolo-quinoline quinone; KEGG: neu:NE0152 PQQ enzyme repeat; Pyrrolo-quinoline quinone complement(2294781..2296010) Nitrosomonas eutropha C91 4272814 YP_748353.1 CDS Neut_2166 NC_008344.1 2296013 2296651 R KEGG: neu:NE0151 hypothetical protein; hypothetical protein complement(2296013..2296651) Nitrosomonas eutropha C91 4272815 YP_748354.1 CDS hisS NC_008344.1 2296674 2297939 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(2296674..2297939) Nitrosomonas eutropha C91 4272816 YP_748355.1 CDS ispG NC_008344.1 2297932 2299176 R catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(2297932..2299176) Nitrosomonas eutropha C91 4272817 YP_748356.1 CDS Neut_2169 NC_008344.1 2299210 2300286 R KEGG: neu:NE0147 hypothetical protein; hypothetical protein complement(2299210..2300286) Nitrosomonas eutropha C91 4272818 YP_748357.1 CDS Neut_2170 NC_008344.1 2300276 2301067 R KEGG: neu:NE0146 TPR repeat; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; type IV pilus biogenesis/stability protein PilW complement(2300276..2301067) Nitrosomonas eutropha C91 4272819 YP_748358.1 CDS Neut_2171 NC_008344.1 2301113 2302252 R TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: neu:NE0145 conserved hypothetical protein 48; radical SAM protein complement(2301113..2302252) Nitrosomonas eutropha C91 4272820 YP_748359.1 CDS ndk NC_008344.1 2302290 2302715 R catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase complement(2302290..2302715) Nitrosomonas eutropha C91 4272821 YP_748360.1 CDS Neut_2173 NC_008344.1 2303013 2303429 R KEGG: neu:NE0143 chain A, red copper protein nitrosocyanin; red copper protein nitrosocyanin subunit A complement(2303013..2303429) Nitrosomonas eutropha C91 4272822 YP_748361.1 CDS Neut_2174 NC_008344.1 2303880 2305268 D PFAM: aminotransferase class-III; KEGG: neu:NE0142 putative aminotransferase protein; class III aminotransferase 2303880..2305268 Nitrosomonas eutropha C91 4272823 YP_748362.1 CDS Neut_2175 NC_008344.1 2305280 2305984 R KEGG: neu:NE0141 probable DNA polymerase III (epsilon chain) protein; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon complement(2305280..2305984) Nitrosomonas eutropha C91 4272824 YP_748363.1 CDS rnhA NC_008344.1 2305996 2306484 R An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H complement(2305996..2306484) Nitrosomonas eutropha C91 4272773 YP_748364.1 CDS Neut_2177 NC_008344.1 2306544 2307251 R KEGG: neu:NE0139 generic methyl-transferase; methyl-transferase complement(2306544..2307251) Nitrosomonas eutropha C91 4272774 YP_748365.1 CDS Neut_2178 NC_008344.1 2307338 2308105 D PFAM: beta-lactamase domain protein; KEGG: neu:NE0138 metallo-beta-lactamase superfamily; hydroxyacylglutathione hydrolase 2307338..2308105 Nitrosomonas eutropha C91 4272775 YP_748366.1 CDS Neut_2179 NC_008344.1 2308409 2308981 R KEGG: neu:NE0137 hypothetical protein; hypothetical protein complement(2308409..2308981) Nitrosomonas eutropha C91 4272776 YP_748367.1 CDS Neut_2180 NC_008344.1 2309088 2310005 R KEGG: nha:Nham_2838 zinc finger, SWIM-type; zinc finger, SWIM-type complement(2309088..2310005) Nitrosomonas eutropha C91 4272777 YP_748368.1 CDS Neut_2181 NC_008344.1 2310009 2312702 R PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD/DEAH box helicase domain protein; KEGG: nha:Nham_2839 SNF2-related; SNF2-like protein complement(2310009..2312702) Nitrosomonas eutropha C91 4272778 YP_748369.1 CDS Neut_2182 NC_008344.1 2313529 2314650 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: sme:SMc01227 putative glycerol trinitrate (GTN) reductase protein; NADH:flavin oxidoreductase 2313529..2314650 Nitrosomonas eutropha C91 4272779 YP_748370.1 CDS Neut_2183 NC_008344.1 2314761 2315237 D KEGG: bma:BMAA1290 ornithine cyclodeaminase; ornithine cyclodeaminase 2314761..2315237 Nitrosomonas eutropha C91 4272780 YP_748371.1 CDS Neut_2184 NC_008344.1 2315272 2316843 D catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 2315272..2316843 Nitrosomonas eutropha C91 4272781 YP_748372.1 CDS Neut_2185 NC_008344.1 2316879 2317718 D PFAM: cation efflux protein; KEGG: lpf:lpl2012 hypothetical protein; cation efflux protein 2316879..2317718 Nitrosomonas eutropha C91 4272782 YP_748373.1 CDS Neut_2186 NC_008344.1 2317875 2319005 D PFAM: Integrase, catalytic region; KEGG: nwi:Nwi_2917 integrase, catalytic region; integrase catalytic subunit 2317875..2319005 Nitrosomonas eutropha C91 4272783 YP_748374.1 CDS Neut_2187 NC_008344.1 2319470 2320414 D TIGRFAM: putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: ppu:PP2196 agmatinase; agmatinase 2319470..2320414 Nitrosomonas eutropha C91 4272784 YP_748375.1 CDS Neut_2188 NC_008344.1 2320426 2322384 D catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 2320426..2322384 Nitrosomonas eutropha C91 4272785 YP_748376.1 CDS Neut_2189 NC_008344.1 2322376 2322744 R KEGG: xoo:XOO2129 transposase and inactivated derivatives; transposase and inactivated derivatives complement(2322376..2322744) Nitrosomonas eutropha C91 4272786 YP_748377.1 CDS Neut_2190 NC_008344.1 2322899 2323192 R PFAM: transposase IS3/IS911 family protein; KEGG: pol:Bpro_4705 hypothetical protein; transposase IS3/IS911 family protein complement(2322899..2323192) Nitrosomonas eutropha C91 4272787 YP_748378.1 CDS Neut_2191 NC_008344.1 2323254 2323715 R hypothetical protein complement(2323254..2323715) Nitrosomonas eutropha C91 4272788 YP_748379.1 CDS Neut_2192 NC_008344.1 2324032 2324853 R PFAM: Integrase, catalytic region; KEGG: lpf:lpl1576 hypothetical protein; integrase catalytic subunit complement(2324032..2324853) Nitrosomonas eutropha C91 4272789 YP_748380.1 CDS Neut_2193 NC_008344.1 2324892 2325014 R hypothetical protein complement(2324892..2325014) Nitrosomonas eutropha C91 4273428 YP_748381.1 CDS Neut_2194 NC_008344.1 2325086 2325382 D PFAM: transposase IS3/IS911 family protein; KEGG: lpf:lpl1584 hypothetical protein; transposase IS3/IS911 family protein 2325086..2325382 Nitrosomonas eutropha C91 4273429 YP_748382.1 CDS Neut_2195 NC_008344.1 2325430 2326257 D PFAM: Integrase, catalytic region; KEGG: lpf:lpl1576 hypothetical protein; integrase catalytic subunit 2325430..2326257 Nitrosomonas eutropha C91 4273430 YP_748383.1 CDS Neut_2196 NC_008344.1 2326581 2327354 D KEGG: reu:Reut_C6077 conserved hypothetical protein Rv2307c; hypothetical protein 2326581..2327354 Nitrosomonas eutropha C91 4273431 YP_748384.1 CDS Neut_2197 NC_008344.1 2327682 2328602 D PFAM: Integrase, catalytic region; KEGG: nwi:Nwi_2917 integrase, catalytic region; integrase catalytic subunit 2327682..2328602 Nitrosomonas eutropha C91 4273432 YP_748385.1 CDS Neut_2198 NC_008344.1 2328610 2329080 R PFAM: transposase, IS4 family protein; KEGG: eba:p2A101 putative transposase, fragment; transposase, IS4 family protein complement(2328610..2329080) Nitrosomonas eutropha C91 4273433 YP_748386.1 CDS Neut_2200 NC_008344.1 2329521 2329886 R KEGG: sfx:S2705 putative transposase; transposase complement(2329521..2329886) Nitrosomonas eutropha C91 4273435 YP_748387.1 CDS Neut_2201 NC_008344.1 2329905 2331212 R PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: dar:Daro_2274 metal-dependent phosphohydrolase, HD subdomain; metal dependent phosphohydrolase complement(2329905..2331212) Nitrosomonas eutropha C91 4273436 YP_748388.1 CDS Neut_2203 NC_008344.1 2331842 2332333 R TIGRFAM: Pseudouridine synthase, Rsu; KEGG: pfl:PFL_5423 ribosomal large subunit pseudouridine synthase E; pseudouridine synthase, Rsu complement(2331842..2332333) Nitrosomonas eutropha C91 4273438 YP_748389.1 CDS Neut_2204 NC_008344.1 2332864 2334579 R PFAM: protein of unknown function UPF0061; KEGG: pmt:PMT1392 conserved hypotheical protein; hypothetical protein complement(2332864..2334579) Nitrosomonas eutropha C91 4273439 YP_748390.1 CDS Neut_2205 NC_008344.1 2334576 2334854 R KEGG: ppu:PP3023 amino acid efflux protein, putative; hypothetical protein complement(2334576..2334854) Nitrosomonas eutropha C91 4273440 YP_748391.1 CDS Neut_2206 NC_008344.1 2335254 2335724 R PFAM: transposase, IS4 family protein; KEGG: xcb:XC_2134 IS1480 transposase; transposase, IS4 family protein complement(2335254..2335724) Nitrosomonas eutropha C91 4273441 YP_748392.1 CDS Neut_2208 NC_008344.1 2336123 2336668 D PFAM: GCN5-related N-acetyltransferase; KEGG: nha:Nham_0713 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2336123..2336668 Nitrosomonas eutropha C91 4273443 YP_748393.1 CDS Neut_2210 NC_008344.1 2336993 2337463 D PFAM: transposase, IS4 family protein; KEGG: xcb:XC_2134 IS1480 transposase; transposase, IS4 family protein 2336993..2337463 Nitrosomonas eutropha C91 4273445 YP_748394.1 CDS Neut_2211 NC_008344.1 2337584 2338228 R PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: bas:BUsg257 hypothetical 23.5 kD protein in adhE-oppA; multiple antibiotic resistance (MarC)-like proteins complement(2337584..2338228) Nitrosomonas eutropha C91 4274321 YP_748395.1 CDS Neut_2212 NC_008344.1 2338321 2338530 R KEGG: nwi:Nwi_2856 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(2338321..2338530) Nitrosomonas eutropha C91 4274322 YP_748396.1 CDS Neut_2213 NC_008344.1 2339313 2340254 D catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase 2339313..2340254 Nitrosomonas eutropha C91 4274323 YP_748397.1 CDS Neut_2214 NC_008344.1 2340517 2341686 D PFAM: major facilitator superfamily MFS_1; KEGG: ret:RHE_CH00339 probable cyanate transport protein; major facilitator superfamily transporter 2340517..2341686 Nitrosomonas eutropha C91 4274324 YP_748398.1 CDS Neut_2215 NC_008344.1 2343061 2343993 D hypothetical protein 2343061..2343993 Nitrosomonas eutropha C91 4274325 YP_748399.1 CDS Neut_2216 NC_008344.1 2344216 2346834 D TIGRFAM: CRISPR-associated protein, Csm1 family; KEGG: neu:NE0123 hypothetical protein; CRISPR-associated Csm1 family protein 2344216..2346834 Nitrosomonas eutropha C91 4274326 YP_748400.1 CDS Neut_2217 NC_008344.1 2346917 2347288 D TIGRFAM: CRISPR-associated protein, Csm2 family; KEGG: neu:NE0122 hypothetical protein; CRISPR-associated Csm2 family protein 2346917..2347288 Nitrosomonas eutropha C91 4274327 YP_748401.1 CDS Neut_2218 NC_008344.1 2347341 2348057 D TIGRFAM: CRISPR-associated RAMP protein, Csm3 family; PFAM: protein of unknown function DUF324; KEGG: neu:NE0121 hypothetical protein; CRISPR-associated RAMP Csm3 family protein 2347341..2348057 Nitrosomonas eutropha C91 4274328 YP_748402.1 CDS Neut_2219 NC_008344.1 2348062 2349030 D KEGG: neu:NE0120 hypothetical protein; hypothetical protein 2348062..2349030 Nitrosomonas eutropha C91 4274329 YP_748403.1 CDS Neut_2220 NC_008344.1 2349027 2350628 D TIGRFAM: CRISPR-associated RAMP protein, Csm5 family; KEGG: neu:NE0119 hypothetical protein; CRISPR-associated RAMP Csm5 family protein 2349027..2350628 Nitrosomonas eutropha C91 4274330 YP_748404.1 CDS Neut_2221 NC_008344.1 2350651 2351607 D KEGG: neu:NE0117 hypothetical protein; hypothetical protein 2350651..2351607 Nitrosomonas eutropha C91 4274331 YP_748405.1 CDS Neut_2222 NC_008344.1 2351604 2351900 D TIGRFAM: putative CRISPR-associated protein, VVA1548 family; KEGG: neu:NE0116 hypothetical protein; CRISPR-associated protein 2351604..2351900 Nitrosomonas eutropha C91 4274332 YP_748406.1 CDS Neut_2223 NC_008344.1 2351897 2353066 D TIGRFAM: CRISPR-associated protein, TM1812 family; CRISPR-associated protein DxTHG motif; KEGG: neu:NE0115 hypothetical protein; CRISPR-associated TM1812 family protein 2351897..2353066 Nitrosomonas eutropha C91 4274333 YP_748407.1 CDS Neut_2224 NC_008344.1 2353155 2353370 D hypothetical protein 2353155..2353370 Nitrosomonas eutropha C91 4274334 YP_748408.1 CDS Neut_2225 NC_008344.1 2353563 2354693 D TIGRFAM: CRISPR-associated protein, NE0113 family; KEGG: neu:NE0113 hypothetical protein; CRISPR-associated NE0113 family protein 2353563..2354693 Nitrosomonas eutropha C91 4274335 YP_748409.1 CDS Neut_2226 NC_008344.1 2354720 2354890 R KEGG: neu:NE1076 putative CcdB-like protein; CcdB-like protein complement(2354720..2354890) Nitrosomonas eutropha C91 4274336 YP_748410.1 CDS Neut_2227 NC_008344.1 2355121 2355216 R KEGG: neu:NE1077 hypothetical protein; hypothetical protein complement(2355121..2355216) Nitrosomonas eutropha C91 4274337 YP_748411.1 CDS Neut_2228 NC_008344.1 2355572 2355859 D TIGRFAM: CRISPR-associated protein Cas2; KEGG: neu:NE0112 hypothetical protein; CRISPR-associated Cas2 family protein 2355572..2355859 Nitrosomonas eutropha C91 4274009 YP_748412.1 CDS Neut_2229 NC_008344.1 2355877 2356863 D TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: neu:NE0111 protein of unknown function DUF48; CRISPR-associated Cas1 family protein 2355877..2356863 Nitrosomonas eutropha C91 4274010 YP_748413.1 CDS Neut_2230 NC_008344.1 2356872 2357156 D TIGRFAM: CRISPR-associated protein Cas2; KEGG: neu:NE0110 hypothetical protein; CRISPR-associated Cas2 family protein 2356872..2357156 Nitrosomonas eutropha C91 4274011 YP_748414.1 CDS Neut_2231 NC_008344.1 2357538 2357837 R hypothetical protein complement(2357538..2357837) Nitrosomonas eutropha C91 4274012 YP_748415.1 CDS Neut_2232 NC_008344.1 2358511 2359149 D KEGG: neu:NE0819 hypothetical protein; hypothetical protein 2358511..2359149 Nitrosomonas eutropha C91 4274013 YP_748416.1 CDS Neut_2233 NC_008344.1 2359336 2359806 D KEGG: neu:NE0109 hypothetical protein; hypothetical protein 2359336..2359806 Nitrosomonas eutropha C91 4274014 YP_748417.1 CDS Neut_2234 NC_008344.1 2360030 2361166 R dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase complement(2360030..2361166) Nitrosomonas eutropha C91 4274015 YP_748418.1 CDS Neut_2235 NC_008344.1 2361215 2361997 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: neu:NE0107 ATPase component uncharacterized ABC-type transport system; ABC transporter-like protein complement(2361215..2361997) Nitrosomonas eutropha C91 4274016 YP_748419.1 CDS Neut_2236 NC_008344.1 2361997 2363142 R PFAM: protein of unknown function DUF140; KEGG: neu:NE0106 possible ABC transport permease; hypothetical protein complement(2361997..2363142) Nitrosomonas eutropha C91 4274017 YP_748420.1 CDS Neut_2237 NC_008344.1 2363167 2364048 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(2363167..2364048) Nitrosomonas eutropha C91 4274018 YP_748421.1 CDS Neut_2238 NC_008344.1 2364136 2365809 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 2364136..2365809 Nitrosomonas eutropha C91 4274019 YP_748422.1 CDS Neut_2240 NC_008344.1 2366155 2366754 D KEGG: neu:NE0103 putative similar to unknown proteins; hypothetical protein 2366155..2366754 Nitrosomonas eutropha C91 4274021 YP_748423.1 CDS Neut_2241 NC_008344.1 2366947 2367897 D KEGG: neu:NE0103 putative similar to unknown proteins; hypothetical protein 2366947..2367897 Nitrosomonas eutropha C91 4274022 YP_748424.1 CDS Neut_2242 NC_008344.1 2367921 2368232 D PFAM: cytochrome c, class I; KEGG: neu:NE0102 cytochrome c-552 precursor; cytochrome c, class I 2367921..2368232 Nitrosomonas eutropha C91 4274023 YP_748425.1 CDS Neut_2243 NC_008344.1 2368402 2369370 D Catalyzes the reduction of hydroxypyruvate to form D-glycerate, using NADH as an electron donor; glycerate dehydrogenase 2368402..2369370 Nitrosomonas eutropha C91 4274024 YP_748426.1 CDS Neut_2244 NC_008344.1 2369448 2369993 D KEGG: neu:NE0678 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 2369448..2369993 Nitrosomonas eutropha C91 4274025 YP_748427.1 CDS Neut_2245 NC_008344.1 2370098 2371369 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: neu:NE0100 general substrate transporters; major facilitator superfamily transporter 2370098..2371369 Nitrosomonas eutropha C91 4274026 YP_748428.1 CDS Neut_2246 NC_008344.1 2371522 2372595 D KEGG: neu:NE0099 hypothetical protein; hypothetical protein 2371522..2372595 Nitrosomonas eutropha C91 4273974 YP_748429.1 CDS Neut_2247 NC_008344.1 2372758 2373423 D PFAM: Chromosomal replication initiator, DnaA; KEGG: neu:NE0098 hypothetical protein; DnaA regulatory inactivator Hda 2372758..2373423 Nitrosomonas eutropha C91 4273975 YP_748430.1 CDS Neut_2248 NC_008344.1 2373560 2374225 D TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; KEGG: neu:NE0097 haloacid dehalogenase/epoxide hydrolase family; HAD family hydrolase 2373560..2374225 Nitrosomonas eutropha C91 4273976 YP_748431.1 CDS Neut_2249 NC_008344.1 2374271 2374636 D KEGG: neu:NE0096 hypothetical protein; hypothetical protein 2374271..2374636 Nitrosomonas eutropha C91 4273977 YP_748432.1 CDS Neut_2250 NC_008344.1 2374761 2376224 D KEGG: neu:NE0095 inosine-5'-monophosphate dehydrogenase oxidoreductase protein; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase; 2-nitropropane dioxygenase, NPD; inosine-5'-monophosphate dehydrogenase 2374761..2376224 Nitrosomonas eutropha C91 4273978 YP_748433.1 CDS guaA NC_008344.1 2376237 2377796 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 2376237..2377796 Nitrosomonas eutropha C91 4273979 YP_748434.1 CDS Neut_2252 NC_008344.1 2378101 2379303 D PFAM: phage integrase family protein; KEGG: sfx:S2723 putative integrase; phage integrase family protein 2378101..2379303 Nitrosomonas eutropha C91 4273980 YP_748435.1 CDS Neut_2253 NC_008344.1 2379451 2379672 D PFAM: Prophage CP4-57 regulatory; KEGG: sfx:S2722 hypothetical bacteriophage protein; phage transcriptional regulator AlpA 2379451..2379672 Nitrosomonas eutropha C91 4273981 YP_748436.1 CDS Neut_2254 NC_008344.1 2379677 2380504 D KEGG: sfx:S2721 putative DNA helicase; DNA helicase 2379677..2380504 Nitrosomonas eutropha C91 4273982 YP_748437.1 CDS Neut_2255 NC_008344.1 2380491 2381372 D PFAM: replication C family protein; KEGG: sfx:S2720 putative replication protein C; replication C family protein 2380491..2381372 Nitrosomonas eutropha C91 4273983 YP_748438.1 CDS Neut_2256 NC_008344.1 2382405 2382593 D KEGG: sfx:S2719 putative stabilization protein; stabilization protein 2382405..2382593 Nitrosomonas eutropha C91 4273984 YP_748439.1 CDS Neut_2257 NC_008344.1 2382734 2383513 D KEGG: sfx:S2718 putative mating pair formation protein; conjugal transfer protein TrbJ 2382734..2383513 Nitrosomonas eutropha C91 4273985 YP_001210447.1 CDS Neut_2533a NC_008344.1 2383526 2383762 D hypothetical protein 2383526..2383762 Nitrosomonas eutropha C91 5129794 YP_748440.1 CDS Neut_2258 NC_008344.1 2383773 2385200 D PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: sfx:S2716 putative mating pair formation protein; TrbL/VirB6 plasmid conjugal transfer protein 2383773..2385200 Nitrosomonas eutropha C91 4273986 YP_748441.1 CDS Neut_2259 NC_008344.1 2385205 2385453 D hypothetical protein 2385205..2385453 Nitrosomonas eutropha C91 4273987 YP_748442.1 CDS Neut_2260 NC_008344.1 2385517 2385741 D KEGG: xcv:XCV2162 hypothetical protein; hypothetical protein 2385517..2385741 Nitrosomonas eutropha C91 4273988 YP_748443.1 CDS Neut_2261 NC_008344.1 2386096 2387163 R PFAM: Bile acid:sodium symporter; KEGG: sfx:S2711 putative sodium bile acid symporter family protein; bile acid:sodium symporter complement(2386096..2387163) Nitrosomonas eutropha C91 4273989 YP_748444.1 CDS Neut_2262 NC_008344.1 2387160 2387666 R PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: sfx:S2710 hypothetical arsenate reductase; protein tyrosine phosphatase complement(2387160..2387666) Nitrosomonas eutropha C91 4273990 YP_748445.1 CDS Neut_2263 NC_008344.1 2387663 2388430 R PFAM: NADPH-dependent FMN reductase; KEGG: sfx:S2709 putative arsenical resistance protein; NADPH-dependent FMN reductase complement(2387663..2388430) Nitrosomonas eutropha C91 4274027 YP_748446.1 CDS Neut_2264 NC_008344.1 2388427 2388759 R PFAM: regulatory protein, ArsR; KEGG: sfx:S2708 putative transcriptional regulator; arsR family transcriptional regulator complement(2388427..2388759) Nitrosomonas eutropha C91 4274028 YP_748447.1 CDS Neut_2265 NC_008344.1 2388907 2389644 D PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: sfx:S2707 resolvase; resolvase domain-containing protein 2388907..2389644 Nitrosomonas eutropha C91 4274029 YP_748448.1 CDS Neut_2266 NC_008344.1 2389641 2389865 D KEGG: sfx:S2706 hypothetical protein; hypothetical protein 2389641..2389865 Nitrosomonas eutropha C91 4274030 YP_748449.1 CDS Neut_2267 NC_008344.1 2390135 2390572 D KEGG: ret:RHE_PB00143 probable insertion sequence transposase protein; hypothetical protein 2390135..2390572 Nitrosomonas eutropha C91 4274031 YP_748450.1 CDS Neut_2268 NC_008344.1 2390485 2391804 R PFAM: Integrase, catalytic region; KEGG: nwi:Nwi_2917 integrase, catalytic region; integrase catalytic subunit complement(2390485..2391804) Nitrosomonas eutropha C91 4274032 YP_748451.1 CDS Neut_2269 NC_008344.1 2392180 2394669 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: bba:Bd0916 cation transporting ATPase; P-type HAD superfamily ATPase 2392180..2394669 Nitrosomonas eutropha C91 4274033 YP_748452.1 CDS Neut_2270 NC_008344.1 2394742 2395134 D KEGG: ret:RHE_PB00143 probable insertion sequence transposase protein; insertion sequence transposase protein 2394742..2395134 Nitrosomonas eutropha C91 4274034 YP_748453.1 CDS Neut_2271 NC_008344.1 2395208 2395666 D KEGG: nwi:Nwi_2921 ISRm2011-2 transposase protein; ISRm2011-2 transposase protein 2395208..2395666 Nitrosomonas eutropha C91 4274035 YP_748454.1 CDS Neut_2272 NC_008344.1 2395688 2396350 D catalyzes the S-adenosylmethionine-dependent transmethylation of thiopurine compounds; may be involved in selenium cycling by forming dimethylselenide and/or dimethyldiselenide; thiopurine S-methyltransferase 2395688..2396350 Nitrosomonas eutropha C91 4274036 YP_748455.1 CDS Neut_2273 NC_008344.1 2396574 2398754 D KEGG: cya:CYA_2363 hypothetical protein; hypothetical protein 2396574..2398754 Nitrosomonas eutropha C91 4274037 YP_748456.1 CDS Neut_2274 NC_008344.1 2398976 2401006 D TIGRFAM: oligopeptide transporters, OPT superfamily; oligopeptide transporter, OPT family; PFAM: Oligopeptide transporter OPT superfamily protein; KEGG: cdi:DIP0329 Opt family protein. putative membrane protein; oligopeptide transporter, OPT family protein 2398976..2401006 Nitrosomonas eutropha C91 4274038 YP_748457.1 CDS Neut_2275 NC_008344.1 2401103 2402485 R KEGG: nmu:Nmul_A0578 hypothetical protein; hypothetical protein complement(2401103..2402485) Nitrosomonas eutropha C91 4274039 YP_748458.1 CDS Neut_2276 NC_008344.1 2402552 2403643 R PFAM: protein of unknown function UPF0118; KEGG: neu:NE0089 domain of unknown function DUF20; hypothetical protein complement(2402552..2403643) Nitrosomonas eutropha C91 4274040 YP_748459.1 CDS Neut_2277 NC_008344.1 2403703 2404761 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 2403703..2404761 Nitrosomonas eutropha C91 4274041 YP_748460.1 CDS purN NC_008344.1 2404773 2405405 D glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 2404773..2405405 Nitrosomonas eutropha C91 4274042 YP_748461.1 CDS Neut_2279 NC_008344.1 2405402 2406124 D KEGG: neu:NE0086 hypothetical protein; hypothetical protein 2405402..2406124 Nitrosomonas eutropha C91 4274043 YP_748462.1 CDS Neut_2280 NC_008344.1 2406141 2407415 D PFAM: Fmu (Sun) domain protein; KEGG: neu:NE0085 SAM (and some other nucleotide) binding motif; Fmu (Sun) domain-containing protein 2406141..2407415 Nitrosomonas eutropha C91 4274044 YP_748463.1 CDS Neut_2281 NC_008344.1 2407496 2407732 R KEGG: neu:NE0084 thioredoxin; thioredoxin complement(2407496..2407732) Nitrosomonas eutropha C91 4274304 YP_748464.1 CDS Neut_2282 NC_008344.1 2407902 2408450 R KEGG: neu:NE0083 proline-rich region; hypothetical protein complement(2407902..2408450) Nitrosomonas eutropha C91 4274305 YP_748465.1 CDS Neut_2283 NC_008344.1 2408465 2408986 R KEGG: neu:NE0082 proline-rich region; hypothetical protein complement(2408465..2408986) Nitrosomonas eutropha C91 4274306 YP_748466.1 CDS Neut_2284 NC_008344.1 2409215 2409934 D KEGG: neu:NE0081 possible transmembrane protein; transmembrane protein 2409215..2409934 Nitrosomonas eutropha C91 4274307 YP_748467.1 CDS Neut_2285 NC_008344.1 2410030 2411754 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; KEGG: neu:NE0080 diguanylate cyclase/phosphodiesterase domain 2 (EAL); response regulator receiver modulated diguanylate cyclase/phosphodiesterase 2410030..2411754 Nitrosomonas eutropha C91 4274308 YP_748468.1 CDS Neut_2286 NC_008344.1 2411967 2412425 D PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: neu:NE0079 FKBP-type peptidyl-prolyl cis-trans isomerase (PPIase); peptidylprolyl isomerase, FKBP-type 2411967..2412425 Nitrosomonas eutropha C91 4274309 YP_748469.1 CDS Neut_2287 NC_008344.1 2412497 2413426 R TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: neu:NE0078 putative ATP-binding protein; ribosome small subunit-dependent GTPase A complement(2412497..2413426) Nitrosomonas eutropha C91 4274310 YP_748470.1 CDS phhB NC_008344.1 2413423 2413764 R 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase complement(2413423..2413764) Nitrosomonas eutropha C91 4274311 YP_748471.1 CDS Neut_2289 NC_008344.1 2413761 2415029 R PFAM: peptidase M48, Ste24p; KEGG: neu:NE0076 peptidase family M48; Ste24 endopeptidase complement(2413761..2415029) Nitrosomonas eutropha C91 4274312 YP_748472.1 CDS Neut_2290 NC_008344.1 2415186 2415731 D 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 2415186..2415731 Nitrosomonas eutropha C91 4274313 YP_748473.1 CDS Neut_2291 NC_008344.1 2415767 2418322 D KEGG: neu:NE0074 putative alpha-glucan phosphorylase, putative; TIGRFAM: alpha-glucan phosphorylases; PFAM: glycosyl transferase, family 35; alpha-glucan phosphorylase 2415767..2418322 Nitrosomonas eutropha C91 4274314 YP_748474.1 CDS panC NC_008344.1 2418346 2419179 R catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase complement(2418346..2419179) Nitrosomonas eutropha C91 4274315 YP_748475.1 CDS panB NC_008344.1 2419203 2420012 R catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(2419203..2420012) Nitrosomonas eutropha C91 4274316 YP_748476.1 CDS Neut_2294 NC_008344.1 2420016 2420660 R PFAM: deoxynucleoside kinase; KEGG: neu:NE0071 deoxynucleoside kinase; deoxynucleoside kinase complement(2420016..2420660) Nitrosomonas eutropha C91 4274317 YP_748477.1 CDS Neut_2295 NC_008344.1 2420657 2421169 R KEGG: neu:NE0070 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(2420657..2421169) Nitrosomonas eutropha C91 4274318 YP_748478.1 CDS Neut_2296 NC_008344.1 2421166 2422554 R TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; KEGG: neu:NE0069 poly A polymerase family; poly(A) polymerase complement(2421166..2422554) Nitrosomonas eutropha C91 4274319 YP_748479.1 CDS Neut_2297 NC_008344.1 2422708 2423865 R PFAM: phospholipase D/Transphosphatidylase; KEGG: neu:NE0068 phospholipase D/Transphosphatidylase; phospholipase D/transphosphatidylase complement(2422708..2423865) Nitrosomonas eutropha C91 4274320 YP_748480.1 CDS Neut_2298 NC_008344.1 2423862 2424623 R PFAM: Endonuclease/exonuclease/phosphatase; KEGG: neu:NE0067 hypothetical protein; endonuclease/exonuclease/phosphatase complement(2423862..2424623) Nitrosomonas eutropha C91 4274338 YP_748481.1 CDS Neut_2299 NC_008344.1 2424695 2425795 R 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase complement(2424695..2425795) Nitrosomonas eutropha C91 4274339 YP_748482.1 CDS Neut_2300 NC_008344.1 2426085 2426666 D PFAM: protein of unknown function DUF1239; KEGG: neu:NE0065 hypothetical protein; hypothetical protein 2426085..2426666 Nitrosomonas eutropha C91 4274340 YP_748483.1 CDS Neut_2301 NC_008344.1 2426736 2427287 D PFAM: OstA family protein; KEGG: neu:NE0064 putative signal peptide protein; OstA family protein 2426736..2427287 Nitrosomonas eutropha C91 4274341 YP_748484.1 CDS Neut_2302 NC_008344.1 2427339 2428061 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: neu:NE0063 ATPase component ABC-type (unclassified) transport system; ABC transporter-like protein 2427339..2428061 Nitrosomonas eutropha C91 4274342 YP_748485.1 CDS Neut_2303 NC_008344.1 2428067 2429530 D TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor, core-binding region; sigma-54, DNA-binding domain protein; KEGG: neu:NE0062 sigma-54 factor family; RNA polymerase sigma 54 subunit RpoN 2428067..2429530 Nitrosomonas eutropha C91 4274343 YP_748486.1 CDS Neut_2304 NC_008344.1 2429705 2430040 D TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: neu:NE0061 sigma 54 modulation protein / S30EA ribosomal protein; sigma 54 modulation protein/ribosomal protein S30EA 2429705..2430040 Nitrosomonas eutropha C91 4274344 YP_748487.1 CDS Neut_2305 NC_008344.1 2430281 2430751 D PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: neu:NE0060 phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); PTS IIA-like nitrogen-regulatory protein PtsN 2430281..2430751 Nitrosomonas eutropha C91 4274345 YP_748488.1 CDS Neut_2306 NC_008344.1 2430738 2431709 D catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 2430738..2431709 Nitrosomonas eutropha C91 4274346 YP_748489.1 CDS Neut_2307 NC_008344.1 2431895 2432509 D TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: neu:NE0058 flavoprotein; aromatic acid decarboxylase 2431895..2432509 Nitrosomonas eutropha C91 4274347 YP_748490.1 CDS Neut_2308 NC_008344.1 2432561 2433199 R PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: neu:NE0057 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase complement(2432561..2433199) Nitrosomonas eutropha C91 4274348 YP_748491.1 CDS Neut_2309 NC_008344.1 2433192 2434322 R TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: neu:NE0056 HhH-GPD; A/G-specific adenine glycosylase complement(2433192..2434322) Nitrosomonas eutropha C91 4274349 YP_748492.1 CDS Neut_2310 NC_008344.1 2434344 2434889 R Involved in cell division; probably involved in intracellular septation; intracellular septation protein A complement(2434344..2434889) Nitrosomonas eutropha C91 4274350 YP_748493.1 CDS Neut_2311 NC_008344.1 2434986 2436683 R PFAM: ABC transporter related; KEGG: neu:NE0054 ABC transporter transmembrane region:ABC transporter; ABC transporter-like protein complement(2434986..2436683) Nitrosomonas eutropha C91 4274351 YP_748494.1 CDS Neut_2312 NC_008344.1 2437202 2437759 R KEGG: neu:NE2057 hypothetical protein; hypothetical protein complement(2437202..2437759) Nitrosomonas eutropha C91 4274352 YP_748495.1 CDS Neut_2313 NC_008344.1 2437871 2440015 R PFAM: copper resistance D domain protein; KEGG: neu:NE2058 cytochrome c, class IC:cytochrome c, class I; copper resistance D domain-containing protein complement(2437871..2440015) Nitrosomonas eutropha C91 4274353 YP_748496.1 CDS Neut_2314 NC_008344.1 2440021 2440452 R PFAM: copper resistance protein CopC; KEGG: neu:NE2059 putative similar to copper export proteins; copper resistance protein CopC complement(2440021..2440452) Nitrosomonas eutropha C91 4274354 YP_748497.1 CDS Neut_2315 NC_008344.1 2440549 2441136 R KEGG: neu:NE2060 hypothetical protein; hypothetical protein complement(2440549..2441136) Nitrosomonas eutropha C91 4274355 YP_748498.1 CDS Neut_2316 NC_008344.1 2441208 2441780 R KEGG: neu:NE2061 possible (U92432) ORF4 [Nitrosospira sp. NpAV]; hypothetical protein complement(2441208..2441780) Nitrosomonas eutropha C91 4272381 YP_748499.1 CDS Neut_2317 NC_008344.1 2442016 2443281 R PFAM: Ammonia monooxygenase/methane monooxygenase, subunit B; KEGG: neu:NE2062 ammonia monooxygenase, subunit B; ammonia monooxygenase/methane monooxygenase subunit B complement(2442016..2443281) Nitrosomonas eutropha C91 4272382 YP_748500.1 CDS Neut_2318 NC_008344.1 2443283 2444113 R PFAM: Ammonia monooxygenase/methane monooxygenase, subunit A; KEGG: neu:NE2063 ammonia monooxygenase, subunit A; ammonia monooxygenase/methane monooxygenase subunit A complement(2443283..2444113) Nitrosomonas eutropha C91 4272383 YP_748501.1 CDS Neut_2319 NC_008344.1 2444287 2445102 R PFAM: Ammonia monooxygenase/methane monooxygenase, subunit C; KEGG: neu:NE0945 ammonia monooxygenase subunit C2; ammonia monooxygenase/methane monooxygenase subunit C complement(2444287..2445102) Nitrosomonas eutropha C91 4272384 YP_748502.1 CDS Neut_2320 NC_008344.1 2445525 2446550 D TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC, N-terminal domain; KEGG: neu:NE0946 SUA5/YciO/YrdC family:SUA5/YciO/YrdC/YwlC protein family; Sua5/YciO/YrdC/YwlC family protein 2445525..2446550 Nitrosomonas eutropha C91 4272385 YP_748503.1 CDS Neut_2321 NC_008344.1 2446565 2447128 D PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: neu:NE0947 hydrolase family; hydrolase 2446565..2447128 Nitrosomonas eutropha C91 4272386 YP_748504.1 CDS Neut_2322 NC_008344.1 2447358 2448344 R PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: neu:NE0948 LysM motif:peptidase family M23/M37; peptidase M23B complement(2447358..2448344) Nitrosomonas eutropha C91 4272387 YP_748505.1 CDS Neut_2323 NC_008344.1 2448466 2449134 R KEGG: neu:NE0949 pimt: protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase complement(2448466..2449134) Nitrosomonas eutropha C91 4272388 YP_748506.1 CDS surE NC_008344.1 2449325 2450068 R catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE complement(2449325..2450068) Nitrosomonas eutropha C91 4272389 YP_748507.1 CDS ihfA NC_008344.1 2450627 2450935 R This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha complement(2450627..2450935) Nitrosomonas eutropha C91 4272391 YP_748508.1 CDS pheT NC_008344.1 2451148 2453526 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(2451148..2453526) Nitrosomonas eutropha C91 4272392 YP_748509.1 CDS pheS NC_008344.1 2453545 2454582 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(2453545..2454582) Nitrosomonas eutropha C91 4272393 YP_748510.1 CDS rplT NC_008344.1 2454652 2455011 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(2454652..2455011) Nitrosomonas eutropha C91 4272394 YP_748511.1 CDS rpmI NC_008344.1 2455023 2455220 R PFAM: ribosomal protein L35; KEGG: neu:NE0956 ribosomal protein L35; 50S ribosomal protein L35 complement(2455023..2455220) Nitrosomonas eutropha C91 4272395 YP_748512.1 CDS Neut_2330 NC_008344.1 2455386 2455874 R TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: neu:NE0957 initiation factor 3; translation initiation factor IF-3 complement(2455386..2455874) Nitrosomonas eutropha C91 4272396 YP_748513.1 CDS thrS NC_008344.1 2455965 2457872 R catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase complement(2455965..2457872) Nitrosomonas eutropha C91 4272755 YP_748514.1 CDS Neut_2332 NC_008344.1 2458200 2458913 R PFAM: NapC/NirT cytochrome c domain protein; KEGG: neu:NE2336 putative tetraheme C-cytochrome; NapC/NirT cytochrome c domain-containing protein complement(2458200..2458913) Nitrosomonas eutropha C91 4272756 YP_748515.1 CDS Neut_2333 NC_008344.1 2458916 2459623 R KEGG: neu:NE2337 cytochrome c-554 precursor; cytochrome c-554 complement(2458916..2459623) Nitrosomonas eutropha C91 4272757 YP_748516.1 CDS Neut_2334 NC_008344.1 2459685 2460806 R KEGG: neu:NE2338 hypothetical protein; hypothetical protein complement(2459685..2460806) Nitrosomonas eutropha C91 4272758 YP_748517.1 CDS Neut_2335 NC_008344.1 2460803 2462515 R KEGG: neu:NE2339 hydroxylamine oxidoreductase; hydroxylamine oxidase complement(2460803..2462515) Nitrosomonas eutropha C91 4272759 YP_748518.1 CDS mnmA NC_008344.1 2462807 2463892 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 2462807..2463892 Nitrosomonas eutropha C91 4272760 YP_748519.1 CDS Neut_2337 NC_008344.1 2463893 2465029 R TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: neu:NE0964 bacterial type II secretion system protein E; twitching motility protein complement(2463893..2465029) Nitrosomonas eutropha C91 4272761 YP_748520.1 CDS Neut_2338 NC_008344.1 2465042 2466085 R KEGG: neu:NE0965 twitching mobility protein transport fimbria; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; twitching motility protein complement(2465042..2466085) Nitrosomonas eutropha C91 4272762 YP_748521.1 CDS Neut_2339 NC_008344.1 2466280 2466996 D TIGRFAM: Protein of unknown function UPF0001; PFAM: alanine racemase domain protein; KEGG: neu:NE0966 uncharacterized pyridoxal-5'-phosphate dependent enzyme family UPF0001; hypothetical protein 2466280..2466996 Nitrosomonas eutropha C91 4272763 YP_748522.1 CDS Neut_2340 NC_008344.1 2466965 2467234 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: neu:NE0967 3Fe-4S ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding domain; 4Fe-4S ferredoxin complement(2466965..2467234) Nitrosomonas eutropha C91 4272764 YP_748523.1 CDS coaD NC_008344.1 2467240 2467734 R Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase complement(2467240..2467734) Nitrosomonas eutropha C91 4272765 YP_748524.1 CDS Neut_2342 NC_008344.1 2467727 2468281 R TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: neu:NE0969 possible N6-adenine-specific methylase; methyltransferase complement(2467727..2468281) Nitrosomonas eutropha C91 4272766 YP_748525.1 CDS Neut_2343 NC_008344.1 2468296 2469597 R PFAM: peptidase M16 domain protein; KEGG: neu:NE0970 insulinase family (peptidase family M16); peptidase M16 domain-containing protein complement(2468296..2469597) Nitrosomonas eutropha C91 4272767 YP_748526.1 CDS Neut_2344 NC_008344.1 2469763 2469966 R KEGG: xoo:XOO4441 transposase; transposase complement(2469763..2469966) Nitrosomonas eutropha C91 4272768 YP_748527.1 CDS Neut_2347 NC_008344.1 2471875 2472198 R PFAM: transposase IS3/IS911 family protein; KEGG: mca:MCA1895 ISMca3, transposase, OrfA; transposase IS3/IS911 family protein complement(2471875..2472198) Nitrosomonas eutropha C91 4272771 YP_748528.1 CDS Neut_2348 NC_008344.1 2472246 2472539 R PFAM: transport-associated; KEGG: ssn:SSO_4526 hyperosmotically inducible periplasmic protein; transport-associated complement(2472246..2472539) Nitrosomonas eutropha C91 4272772 YP_748529.1 CDS Neut_2349 NC_008344.1 2472738 2473202 R KEGG: ath:At5g44310_1 late embryogenesis abundant (LEA) domain-containing protein; hypothetical protein complement(2472738..2473202) Nitrosomonas eutropha C91 4272639 YP_748530.1 CDS Neut_2350 NC_008344.1 2473239 2473436 R PFAM: CsbD family protein; KEGG: hch:HCH_05492 hypothetical protein; CsbD family protein complement(2473239..2473436) Nitrosomonas eutropha C91 4272640 YP_748531.1 CDS Neut_2351 NC_008344.1 2473512 2473679 R PFAM: protein of unknown function DUF1328; KEGG: noc:Noc_0484 protein of unknown function DUF1328; hypothetical protein complement(2473512..2473679) Nitrosomonas eutropha C91 4272641 YP_748532.1 CDS Neut_2352 NC_008344.1 2474992 2475390 D PFAM: PRC-barrel domain protein; KEGG: nmu:Nmul_A1923 PRC-barrel; PRC-barrel domain-containing protein 2474992..2475390 Nitrosomonas eutropha C91 4272642 YP_748533.1 CDS Neut_2353 NC_008344.1 2475450 2475686 D KEGG: ilo:IL1558 uncharacterized conserved protein, ElaB family; hypothetical protein 2475450..2475686 Nitrosomonas eutropha C91 4272643 YP_748534.1 CDS Neut_2354 NC_008344.1 2475754 2475999 D KEGG: ilo:IL1558 uncharacterized conserved protein, ElaB family; hypothetical protein 2475754..2475999 Nitrosomonas eutropha C91 4272644 YP_748535.1 CDS Neut_2355 NC_008344.1 2476096 2476551 D hypothetical protein 2476096..2476551 Nitrosomonas eutropha C91 4272645 YP_748536.1 CDS Neut_2356 NC_008344.1 2477617 2478555 R KEGG: pfl:PFL_2576 hypothetical protein; hypothetical protein complement(2477617..2478555) Nitrosomonas eutropha C91 4272646 YP_748537.1 CDS Neut_2357 NC_008344.1 2478845 2479384 R PFAM: transport-associated; KEGG: tbd:Tbd_2251 transport-associated; transport-associated complement(2478845..2479384) Nitrosomonas eutropha C91 4272647 YP_748538.1 CDS Neut_2358 NC_008344.1 2479583 2479885 R KEGG: nmu:Nmul_A1416 hypothetical protein; hypothetical protein complement(2479583..2479885) Nitrosomonas eutropha C91 4272648 YP_748539.1 CDS Neut_2359 NC_008344.1 2479922 2480119 R PFAM: CsbD family protein; KEGG: hch:HCH_05492 hypothetical protein; CsbD family protein complement(2479922..2480119) Nitrosomonas eutropha C91 4272649 YP_748540.1 CDS Neut_2360 NC_008344.1 2480195 2480362 R PFAM: protein of unknown function DUF1328; KEGG: noc:Noc_0484 protein of unknown function DUF1328; hypothetical protein complement(2480195..2480362) Nitrosomonas eutropha C91 4272650 YP_748541.1 CDS Neut_2361 NC_008344.1 2480648 2481502 R PFAM: transposase, mutator type; KEGG: sat:SYN_03102 transposase; transposase, mutator type complement(2480648..2481502) Nitrosomonas eutropha C91 4272651 YP_748542.1 CDS Neut_2362 NC_008344.1 2481558 2482028 R PFAM: transposase, IS4 family protein; KEGG: xcb:XC_2134 IS1480 transposase; transposase, IS4 family protein complement(2481558..2482028) Nitrosomonas eutropha C91 4272652 YP_748543.1 CDS Neut_2364 NC_008344.1 2482367 2482747 R KEGG: bxe:Bxe_B0295 transposase; hypothetical protein complement(2482367..2482747) Nitrosomonas eutropha C91 4272654 YP_748544.1 CDS Neut_2365 NC_008344.1 2482880 2483221 D KEGG: neu:NE1553 possible transposase; transposase 2482880..2483221 Nitrosomonas eutropha C91 4272655 YP_748545.1 CDS Neut_2366 NC_008344.1 2483526 2484089 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: neu:NE2465 alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; alkyl hydroperoxide reductase 2483526..2484089 Nitrosomonas eutropha C91 4272550 YP_748546.1 CDS Neut_2367 NC_008344.1 2484184 2484765 D KEGG: neu:NE2466 putative lipoprotein; lipoprotein 2484184..2484765 Nitrosomonas eutropha C91 4272551 YP_748547.1 CDS Neut_2368 NC_008344.1 2484793 2485572 R PFAM: band 7 protein; KEGG: neu:NE2467 band 7 protein; hypothetical protein complement(2484793..2485572) Nitrosomonas eutropha C91 4272552 YP_748548.1 CDS Neut_2369 NC_008344.1 2485574 2487001 R PFAM: protein of unknown function DUF107; KEGG: neu:NE2468 protein of unknown function DUF107; hypothetical protein complement(2485574..2487001) Nitrosomonas eutropha C91 4272553 YP_748549.1 CDS Neut_2370 NC_008344.1 2487012 2487647 R KEGG: neu:NE2470 ADP-ribose pyrophosphatase; TIGRFAM: Nucleoside diphosphate pyrophosphatase; PFAM: NUDIX hydrolase; nucleoside diphosphate pyrophosphatase complement(2487012..2487647) Nitrosomonas eutropha C91 4272554 YP_748550.1 CDS Neut_2371 NC_008344.1 2487798 2488712 R PFAM: import inner membrane translocase, subunit Tim44; KEGG: neu:NE2471 hypothetical protein; import inner membrane translocase subunit Tim44 complement(2487798..2488712) Nitrosomonas eutropha C91 4272555 YP_748551.1 CDS Neut_2372 NC_008344.1 2488794 2489672 D TIGRFAM: conserved hypothetical protein; PFAM: YicC N-terminal domain protein; domain of unknown function DUF1732; KEGG: neu:NE2472 hypothetical protein; hypothetical protein 2488794..2489672 Nitrosomonas eutropha C91 4272556 YP_748552.1 CDS Neut_2373 NC_008344.1 2489766 2490779 R KEGG: nmu:Nmul_A2613 putative C4-dicarboxylate transporter; C4-dicarboxylate transporter complement(2489766..2490779) Nitrosomonas eutropha C91 4272557 YP_748553.1 CDS Neut_2374 NC_008344.1 2491112 2491837 R PFAM: Nucleotidyl transferase; KEGG: neu:NE0190 ADP-glucose pyrophosphorylase; nucleotidyl transferase complement(2491112..2491837) Nitrosomonas eutropha C91 4272558 YP_748554.1 CDS Neut_2375 NC_008344.1 2491852 2492850 R PFAM: aminoglycoside phosphotransferase; KEGG: neu:NE0191 domain of unknown function DUF227; aminoglycoside phosphotransferase complement(2491852..2492850) Nitrosomonas eutropha C91 4272559 YP_748555.1 CDS Neut_2376 NC_008344.1 2493015 2493323 D PFAM: protein of unknown function DUF526; KEGG: neu:NE0192 hypothetical protein; hypothetical protein 2493015..2493323 Nitrosomonas eutropha C91 4272560 YP_748556.1 CDS Neut_2377 NC_008344.1 2493389 2494888 D KEGG: neu:NE0193 probable Mg(2+) chelatase family protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; Mg chelatase subunit ChlI 2493389..2494888 Nitrosomonas eutropha C91 4272561 YP_748557.1 CDS Neut_2378 NC_008344.1 2494907 2496304 R KEGG: neu:NE0194 replicative DNA helicase protein; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase, N-terminal domain protein; DnaB domain protein helicase, C-terminal domain protein; SMART: AAA ATPase; replicative DNA helicase complement(2494907..2496304) Nitrosomonas eutropha C91 4272562 YP_748558.1 CDS rplI NC_008344.1 2496410 2496865 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(2496410..2496865) Nitrosomonas eutropha C91 4272563 YP_748559.1 CDS rpsR NC_008344.1 2496884 2497162 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(2496884..2497162) Nitrosomonas eutropha C91 4272564 YP_748560.1 CDS Neut_2381 NC_008344.1 2497204 2497512 R KEGG: neu:NE0197 primosomal replication protein N; primosomal replication protein N complement(2497204..2497512) Nitrosomonas eutropha C91 4272565 YP_748561.1 CDS rpsF NC_008344.1 2497514 2497948 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(2497514..2497948) Nitrosomonas eutropha C91 4272566 YP_748562.1 CDS Neut_2383 NC_008344.1 2498453 2498968 R KEGG: xoo:XOO2495 putative transposase; hypothetical protein complement(2498453..2498968) Nitrosomonas eutropha C91 4272567 YP_748563.1 CDS Neut_2384 NC_008344.1 2499222 2500109 R catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase complement(2499222..2500109) Nitrosomonas eutropha C91 4272516 YP_748564.1 CDS Neut_2385 NC_008344.1 2500172 2500651 R PFAM: CheW domain protein; KEGG: neu:NE1006 CheW-like domain; CheW protein complement(2500172..2500651) Nitrosomonas eutropha C91 4272517 YP_748565.1 CDS Neut_2386 NC_008344.1 2500680 2501045 R PFAM: response regulator receiver; KEGG: neu:NE1007 response regulator receiver domain; response regulator receiver protein complement(2500680..2501045) Nitrosomonas eutropha C91 4272518 YP_748566.1 CDS Neut_2387 NC_008344.1 2501376 2501891 D PFAM: transport-associated; KEGG: neu:NE1008 hypothetical protein; transport-associated 2501376..2501891 Nitrosomonas eutropha C91 4272519 YP_748567.1 CDS Neut_2388 NC_008344.1 2501928 2503298 D PFAM: FAD linked oxidase domain protein; KEGG: neu:NE1009 D-lactate dehydrogenase; D-lactate dehydrogenase 2501928..2503298 Nitrosomonas eutropha C91 4272520 YP_748568.1 CDS Neut_2389 NC_008344.1 2503392 2504288 R converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase complement(2503392..2504288) Nitrosomonas eutropha C91 4272521 YP_748569.1 CDS Neut_2390 NC_008344.1 2504379 2504960 R KEGG: neu:NE1011 putative transmembrane protein; transmembrane protein complement(2504379..2504960) Nitrosomonas eutropha C91 4272522 YP_748570.1 CDS Neut_2391 NC_008344.1 2504935 2505654 R KEGG: neu:NE1012 SURF1 family; SURF1 family protein complement(2504935..2505654) Nitrosomonas eutropha C91 4272523 YP_748571.1 CDS Neut_2392 NC_008344.1 2505747 2506592 R PFAM: cytochrome c oxidase, subunit III; KEGG: neu:NE1013 cytochrome c oxidase, subunit III; cytochrome c oxidase subunit III complement(2505747..2506592) Nitrosomonas eutropha C91 4272524 YP_748572.1 CDS Neut_2393 NC_008344.1 2506784 2507302 R involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein complement(2506784..2507302) Nitrosomonas eutropha C91 4272525 YP_748573.1 CDS Neut_2394 NC_008344.1 2507437 2509014 R PFAM: cytochrome c oxidase, subunit I; KEGG: neu:NE1016 cytochrome c oxidase, subunit I; cytochrome-c oxidase complement(2507437..2509014) Nitrosomonas eutropha C91 4272526 YP_748574.1 CDS Neut_2395 NC_008344.1 2509074 2509916 R PFAM: cytochrome c oxidase, subunit II; cytochrome C oxidase subunit II, transmembrane region; KEGG: neu:NE1017 cytochrome C oxidase polypeptide II precursor (cytochrome AA3 subunit 2) transmembrane protein; cytochrome c oxidase subunit II complement(2509074..2509916) Nitrosomonas eutropha C91 4272527 YP_748575.1 CDS Neut_2397 NC_008344.1 2511340 2511558 D PFAM: Heavy metal transport/detoxification protein; KEGG: neu:NE1020 heavy-metal-associated domain; heavy metal transport/detoxification protein 2511340..2511558 Nitrosomonas eutropha C91 4272529 YP_748576.1 CDS Neut_2398 NC_008344.1 2511682 2512650 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 2511682..2512650 Nitrosomonas eutropha C91 4272530 YP_748577.1 CDS Neut_2399 NC_008344.1 2512742 2513998 D TIGRFAM: tRNA(Ile)-lysidine synthetase; tRNA(Ile)-lysidine synthetase-like; PFAM: PP-loop domain protein; KEGG: neu:NE1022 cell cycle protein MesJ; tRNA(Ile)-lysidine synthetase 2512742..2513998 Nitrosomonas eutropha C91 4272531 YP_748578.1 CDS Neut_2400 NC_008344.1 2514002 2515063 D TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: nmu:Nmul_A0264 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase 2514002..2515063 Nitrosomonas eutropha C91 4272532 YP_748579.1 CDS Neut_2401 NC_008344.1 2515069 2515956 D PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: neu:NE1023 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 2515069..2515956 Nitrosomonas eutropha C91 4274373 YP_748580.1 CDS Neut_2402 NC_008344.1 2515966 2516919 R PFAM: peptidase S49; KEGG: neu:NE1024 peptidase family U7; peptidase S49 complement(2515966..2516919) Nitrosomonas eutropha C91 4274374 YP_748581.1 CDS Neut_2403 NC_008344.1 2516947 2517609 R PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: neu:NE1025 bacterial outer membrane protein; ompA/MotB domain-containing protein complement(2516947..2517609) Nitrosomonas eutropha C91 4274375 YP_748582.1 CDS Neut_2404 NC_008344.1 2517821 2518585 R PFAM: SH3, type 3 domain protein; KEGG: neu:NE1026 hypothetical protein; SH3 type 3 domain-containing protein complement(2517821..2518585) Nitrosomonas eutropha C91 4274376 YP_748583.1 CDS Neut_2405 NC_008344.1 2518946 2520133 D PFAM: transposase, mutator type; KEGG: eba:p2A367 transposase; transposase, mutator type 2518946..2520133 Nitrosomonas eutropha C91 4274377 YP_748584.1 CDS Neut_2407 NC_008344.1 2520472 2520942 D PFAM: transposase, IS4 family protein; KEGG: xcb:XC_2134 IS1480 transposase; transposase, IS4 family protein 2520472..2520942 Nitrosomonas eutropha C91 4274379 YP_748585.1 CDS Neut_2408 NC_008344.1 2521099 2521974 D KEGG: neu:NE1027 esterase/lipase/thioesterase family active site; esterase/lipase/thioesterase family protein 2521099..2521974 Nitrosomonas eutropha C91 4274380 YP_748586.1 CDS Neut_2409 NC_008344.1 2521989 2522114 R KEGG: eba:p2A147 IS1480 transposase, fragment; hypothetical protein complement(2521989..2522114) Nitrosomonas eutropha C91 4274381 YP_748587.1 CDS Neut_2410 NC_008344.1 2522128 2523048 R PFAM: Integrase, catalytic region; KEGG: nwi:Nwi_2917 integrase, catalytic region; integrase catalytic subunit complement(2522128..2523048) Nitrosomonas eutropha C91 4274382 YP_748588.1 CDS Neut_2411 NC_008344.1 2524052 2524375 R hypothetical protein complement(2524052..2524375) Nitrosomonas eutropha C91 4274383 YP_748589.1 CDS Neut_2412 NC_008344.1 2525116 2525214 R hypothetical protein complement(2525116..2525214) Nitrosomonas eutropha C91 4274384 YP_748590.1 CDS Neut_2413 NC_008344.1 2525277 2525594 R KEGG: nwi:Nwi_2921 ISRm2011-2 transposase protein; ISRm2011-2 transposase protein complement(2525277..2525594) Nitrosomonas eutropha C91 4274385 YP_748591.1 CDS Neut_2414 NC_008344.1 2525668 2526060 R KEGG: ret:RHE_PB00143 probable insertion sequence transposase protein; insertion sequence transposase protein complement(2525668..2526060) Nitrosomonas eutropha C91 4274386 YP_748592.1 CDS Neut_2415 NC_008344.1 2526666 2527775 R PFAM: filamentation induced by cAMP protein Fic; KEGG: cch:Cag_0831 regulatory proteins, AsnC family; filamentation induced by cAMP protein fic complement(2526666..2527775) Nitrosomonas eutropha C91 4274387 YP_748593.1 CDS Neut_2416 NC_008344.1 2527826 2527975 R hypothetical protein complement(2527826..2527975) Nitrosomonas eutropha C91 4274388 YP_748594.1 CDS Neut_2417 NC_008344.1 2528038 2528355 R KEGG: nwi:Nwi_2921 ISRm2011-2 transposase protein; ISRm2011-2 transposase protein complement(2528038..2528355) Nitrosomonas eutropha C91 4274389 YP_748595.1 CDS Neut_2418 NC_008344.1 2528429 2528821 R KEGG: ret:RHE_PB00143 probable insertion sequence transposase protein; insertion sequence transposase protein complement(2528429..2528821) Nitrosomonas eutropha C91 4274390 YP_748596.1 CDS Neut_2419 NC_008344.1 2528998 2530713 R PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: bbr:BB0911 putative serine protease; peptidase S8/S53 subtilisin kexin sedolisin complement(2528998..2530713) Nitrosomonas eutropha C91 4273653 YP_748597.1 CDS Neut_2422 NC_008344.1 2531682 2532152 D PFAM: transposase, IS4 family protein; KEGG: eba:p2A101 putative transposase, fragment; transposase, IS4 family protein 2531682..2532152 Nitrosomonas eutropha C91 4273656 YP_748598.1 CDS Neut_2424 NC_008344.1 2533113 2534357 D TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: noc:Noc_0703 exonuclease SbcD; nuclease SbcCD subunit D 2533113..2534357 Nitrosomonas eutropha C91 4273658 YP_748599.1 CDS Neut_2425 NC_008344.1 2534369 2537620 D PFAM: SMC domain protein; KEGG: noc:Noc_0704 ATP-dependent dsDNA exonuclease (SbcC); SMC domain-containing protein 2534369..2537620 Nitrosomonas eutropha C91 4273659 YP_748600.1 CDS Neut_2426 NC_008344.1 2537783 2539072 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: neu:NE0976 putative nitrate transport system ATP-binding protein; ABC transporter-like protein complement(2537783..2539072) Nitrosomonas eutropha C91 4273660 YP_748601.1 CDS Neut_2427 NC_008344.1 2539094 2540833 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: neu:NE0977 putative nitrate transport system permease protein; binding-protein-dependent transport systems inner membrane component complement(2539094..2540833) Nitrosomonas eutropha C91 4273661 YP_748602.1 CDS Neut_2428 NC_008344.1 2540986 2541219 R KEGG: neu:NE1552 transposase IS4 family; hypothetical protein complement(2540986..2541219) Nitrosomonas eutropha C91 4273662 YP_748603.1 CDS Neut_2429 NC_008344.1 2541613 2542182 R KEGG: pol:Bpro_3150 DedA; hypothetical protein complement(2541613..2542182) Nitrosomonas eutropha C91 4273663 YP_748604.1 CDS Neut_2430 NC_008344.1 2542538 2543113 D KEGG: reu:Reut_B3980 hypothetical protein; hypothetical protein 2542538..2543113 Nitrosomonas eutropha C91 4273664 YP_748605.1 CDS Neut_2431 NC_008344.1 2543292 2544734 R KEGG: tbd:Tbd_2122 glucose-6-phosphate dehydrogenase; TIGRFAM: glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase; glucose-6-phosphate 1-dehydrogenase complement(2543292..2544734) Nitrosomonas eutropha C91 4273665 YP_748606.1 CDS Neut_2432 NC_008344.1 2544752 2545807 R similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate; 6-phosphogluconate dehydrogenase complement(2544752..2545807) Nitrosomonas eutropha C91 4273666 YP_748607.1 CDS Neut_2433 NC_008344.1 2545800 2548106 R PFAM: ROK family protein; phosphoglucose isomerase (PGI); KEGG: dra:DR1742 glucose-6-phosphate isomerase; phosphoglucose isomerase complement(2545800..2548106) Nitrosomonas eutropha C91 4273667 YP_748608.1 CDS Neut_2434 NC_008344.1 2548443 2549276 R TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: neu:NE2473 ParB-like nuclease domain:ParB-like partition protein; parB-like partition proteins complement(2548443..2549276) Nitrosomonas eutropha C91 4273668 YP_748609.1 CDS Neut_2435 NC_008344.1 2549327 2550091 R PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: neu:NE2474 ParA family ATPase; cobyrinic acid a,c-diamide synthase complement(2549327..2550091) Nitrosomonas eutropha C91 4273669 YP_748610.1 CDS gidB NC_008344.1 2550155 2550799 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(2550155..2550799) Nitrosomonas eutropha C91 4273515 YP_748611.1 CDS Neut_2437 NC_008344.1 2550774 2552699 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(2550774..2552699) Nitrosomonas eutropha C91 4273516 YP_748612.1 CDS Neut_2438 NC_008344.1 2553081 2553545 R PFAM: FlgN family protein; KEGG: neu:NE2477 putative flagella synthesis protein FlgN; FlgN family protein complement(2553081..2553545) Nitrosomonas eutropha C91 4273517 YP_748613.1 CDS Neut_2439 NC_008344.1 2553547 2553849 R PFAM: Anti-sigma-28 factor, FlgM family protein; KEGG: neu:NE2478 negative regulator of flagellin synthesis FlgM; anti-sigma-28 factor FlgM complement(2553547..2553849) Nitrosomonas eutropha C91 4273518 YP_748614.1 CDS Neut_2440 NC_008344.1 2554129 2555622 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: neu:NE2479 oligopeptide ABC transporter; binding-protein-dependent transport system inner membrane protein 2554129..2555622 Nitrosomonas eutropha C91 4273519 YP_748615.1 CDS Neut_2441 NC_008344.1 2555619 2557676 D KEGG: neu:NE2480 ATPase component ABC-type dipeptide/oligopeptide/nickel transport system; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 2555619..2557676 Nitrosomonas eutropha C91 4273520 YP_748616.1 CDS prfC NC_008344.1 2557673 2559280 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 2557673..2559280 Nitrosomonas eutropha C91 4273521 YP_748617.1 CDS flhB NC_008344.1 2559532 2560662 D membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 2559532..2560662 Nitrosomonas eutropha C91 4273522 YP_748618.1 CDS flhA NC_008344.1 2560710 2562794 D membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 2560710..2562794 Nitrosomonas eutropha C91 4273523 YP_748619.1 CDS flhF NC_008344.1 2562791 2564062 D positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 2562791..2564062 Nitrosomonas eutropha C91 4273524 YP_748620.1 CDS Neut_2446 NC_008344.1 2564055 2564948 D KEGG: neu:NE2490 putative MinD-related protein; MinD-like protein 2564055..2564948 Nitrosomonas eutropha C91 4273525 YP_748621.1 CDS Neut_2447 NC_008344.1 2564957 2565667 D TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: neu:NE2491 sigma-70 factor family; RNA polymerase subunit sigma 28 2564957..2565667 Nitrosomonas eutropha C91 4273526 YP_748622.1 CDS Neut_2448 NC_008344.1 2565873 2566151 D KEGG: xfa:XF2724 type I restriction-modification system; type I restriction-modification system 2565873..2566151 Nitrosomonas eutropha C91 4273527 YP_748623.1 CDS Neut_2449 NC_008344.1 2566336 2566773 D KEGG: ret:RHE_PB00143 probable insertion sequence transposase protein; hypothetical protein 2566336..2566773 Nitrosomonas eutropha C91 4273528 YP_748624.1 CDS Neut_2450 NC_008344.1 2566847 2567320 D KEGG: nwi:Nwi_2921 ISRm2011-2 transposase protein; ISRm2011-2 transposase protein 2566847..2567320 Nitrosomonas eutropha C91 4273529 YP_748625.1 CDS Neut_2452 NC_008344.1 2567987 2568835 R PFAM: Integrase, catalytic region; KEGG: pol:Bpro_5204 integrase, catalytic region; integrase catalytic subunit complement(2567987..2568835) Nitrosomonas eutropha C91 4273531 YP_748626.1 CDS Neut_2453 NC_008344.1 2568892 2569215 R PFAM: transposase IS3/IS911 family protein; KEGG: mca:MCA1895 ISMca3, transposase, OrfA; transposase IS3/IS911 family protein complement(2568892..2569215) Nitrosomonas eutropha C91 4273532 YP_748627.1 CDS Neut_2454 NC_008344.1 2569267 2569503 D KEGG: xfa:XF2747 hypothetical protein; hypothetical protein 2569267..2569503 Nitrosomonas eutropha C91 4274287 YP_748628.1 CDS Neut_2455 NC_008344.1 2569613 2570176 R PFAM: NADPH-dependent FMN reductase; KEGG: neu:NE1004 hypothetical protein; NADPH-dependent FMN reductase complement(2569613..2570176) Nitrosomonas eutropha C91 4274288 YP_748629.1 CDS Neut_2456 NC_008344.1 2570220 2571125 R PFAM: Aldose 1-epimerase; KEGG: neu:NE1003 aldose 1-epimerase; aldose 1-epimerase complement(2570220..2571125) Nitrosomonas eutropha C91 4274289 YP_748630.1 CDS Neut_2457 NC_008344.1 2571268 2574111 D Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 2571268..2574111 Nitrosomonas eutropha C91 4274290 YP_748631.1 CDS Neut_2458 NC_008344.1 2574232 2575503 R PFAM: MOFRL domain protein; KEGG: neu:NE2456 putative hydroxypyruvate reductase oxidoreductase protein; hydroxypyruvate reductase complement(2574232..2575503) Nitrosomonas eutropha C91 4274291 YP_748632.1 CDS Neut_2459 NC_008344.1 2575500 2578337 R TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: neu:NE2455 ABC transporter:Excinuclease ABC A subunit; excinuclease ABC subunit A complement(2575500..2578337) Nitrosomonas eutropha C91 4274292 YP_748633.1 CDS Neut_2460 NC_008344.1 2578412 2579818 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: neu:NE2454 MFS family transporter; major facilitator superfamily transporter 2578412..2579818 Nitrosomonas eutropha C91 4274293 YP_748634.1 CDS Neut_2461 NC_008344.1 2579819 2580286 D TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: neu:NE2453 Single-strand binding protein family; single-strand binding protein 2579819..2580286 Nitrosomonas eutropha C91 4274294 YP_748635.1 CDS Neut_2462 NC_008344.1 2580489 2582279 D PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: neu:NE2452 ABC transporter, fused permease and ATPase domains; ABC transporter-like protein 2580489..2582279 Nitrosomonas eutropha C91 4274295 YP_748636.1 CDS Neut_2463 NC_008344.1 2582280 2583212 D KEGG: neu:NE1274 cytochrome c, class I; cytochrome c, class I 2582280..2583212 Nitrosomonas eutropha C91 4274296 YP_748637.1 CDS Neut_2464 NC_008344.1 2583258 2584217 R catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase complement(2583258..2584217) Nitrosomonas eutropha C91 4274297 YP_748638.1 CDS Neut_2465 NC_008344.1 2584217 2584624 R PFAM: S-adenosylmethionine decarboxylase related; KEGG: neu:NE0348 DUF206; S-adenosylmethionine decarboxylase-related protein complement(2584217..2584624) Nitrosomonas eutropha C91 4274298 YP_748639.1 CDS Neut_2466 NC_008344.1 2585018 2588458 R Synthesizes thioester adducts of fatty acids enzymatically to the phosphopantetheine group of acyl carrier protein; acylglycerophosphoethanolamine acyltransferase complement(2585018..2588458) Nitrosomonas eutropha C91 4274299 YP_748640.1 CDS Neut_2467 NC_008344.1 2588705 2591578 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2588705..2591578 Nitrosomonas eutropha C91 4274300 YP_748641.1 CDS Neut_2468 NC_008344.1 2591630 2592763 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit beta 2591630..2592763 Nitrosomonas eutropha C91 4274301 YP_748642.1 CDS Neut_2469 NC_008344.1 2592911 2594275 D PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase, catalytic; KEGG: neu:NE2421 SLT domain:LysM motif; lytic transglycosylase, catalytic 2592911..2594275 Nitrosomonas eutropha C91 4274302 YP_748643.1 CDS Neut_2470 NC_008344.1 2594263 2597883 R KEGG: neu:NE2420 biotin / lipoyl attachment:carbamoyl-phosphate synthase:DUF183; TIGRFAM: urea amidolyase related protein; PFAM: biotin/lipoyl attachment domain-containing protein; Allophanate hydrolase subunit 2; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; urea amidolyase-like protein complement(2594263..2597883) Nitrosomonas eutropha C91 4274303 YP_748644.1 CDS Neut_2471 NC_008344.1 2598498 2598809 D hypothetical protein 2598498..2598809 Nitrosomonas eutropha C91 4273101 YP_748645.1 CDS Neut_2472 NC_008344.1 2598829 2600367 D PFAM: amino acid permease-associated region; KEGG: neu:NE2419 amino acid permease; amino acid permease 2598829..2600367 Nitrosomonas eutropha C91 4273102 YP_748646.1 CDS Neut_2473 NC_008344.1 2600382 2601110 D KEGG: neu:NE2418 hypothetical protein; hypothetical protein 2600382..2601110 Nitrosomonas eutropha C91 4273103 YP_748647.1 CDS Neut_2474 NC_008344.1 2601107 2601772 D KEGG: neu:NE2417 hypothetical protein; hypothetical protein 2601107..2601772 Nitrosomonas eutropha C91 4273104 YP_748648.1 CDS Neut_2475 NC_008344.1 2601826 2604159 D KEGG: neu:NE2416 biotin / lipoyl attachment:DUF183:DUF213; TIGRFAM: urea amidolyase related protein; PFAM: biotin/lipoyl attachment domain-containing protein; Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; urea amidolyase-like protein 2601826..2604159 Nitrosomonas eutropha C91 4273105 YP_748649.1 CDS Neut_2476 NC_008344.1 2604291 2604734 D PFAM: UspA domain protein; KEGG: neu:NE1028 universal stress protein (Usp); UspA domain-containing protein 2604291..2604734 Nitrosomonas eutropha C91 4273106 YP_748650.1 CDS Neut_2477 NC_008344.1 2604805 2605878 R TIGRFAM: lytic murein transglycosylase B; KEGG: neu:NE1033 putative membrane-bound lytic transglycosylase; lytic murein transglycosylase B complement(2604805..2605878) Nitrosomonas eutropha C91 4273107 YP_748651.1 CDS Neut_2478 NC_008344.1 2606450 2606776 D TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: neu:NE1034 thioredoxin; thioredoxin 2606450..2606776 Nitrosomonas eutropha C91 4273108 YP_748652.1 CDS rho NC_008344.1 2606990 2608249 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 2606990..2608249 Nitrosomonas eutropha C91 4273109 YP_748653.1 CDS Neut_2481 NC_008344.1 2609129 2609410 R PFAM: Septum formation initiator; KEGG: neu:NE1043 putative transmembrane protein; septum formation initiator complement(2609129..2609410) Nitrosomonas eutropha C91 4273111 YP_748654.1 CDS eno NC_008344.1 2609407 2610693 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(2609407..2610693) Nitrosomonas eutropha C91 4273112 YP_748655.1 CDS pyrG NC_008344.1 2610982 2612676 R CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(2610982..2612676) Nitrosomonas eutropha C91 4273113 YP_748656.1 CDS Neut_2484 NC_008344.1 2612858 2613250 D PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: neu:NE1046 succinate dehydrogenase, cytochrome b subunit; succinate dehydrogenase, cytochrome b subunit 2612858..2613250 Nitrosomonas eutropha C91 4273114 YP_748657.1 CDS Neut_2485 NC_008344.1 2613244 2613597 D KEGG: neu:NE1047 succinate dehydrogenase, cytochrome b subunit; succinate dehydrogenase, cytochrome b subunit 2613244..2613597 Nitrosomonas eutropha C91 4273115 YP_748658.1 CDS Neut_2486 NC_008344.1 2613599 2615362 D KEGG: neu:NE1048 succinate dehydrogenase/fumarate reductase, flavoprotein subunits; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; succinate dehydrogenase, flavoprotein subunit 2613599..2615362 Nitrosomonas eutropha C91 4273116 YP_748659.1 CDS Neut_2487 NC_008344.1 2615440 2616414 D PFAM: Ankyrin; KEGG: neu:NE1049 ankyrin-repeat; ankyrin 2615440..2616414 Nitrosomonas eutropha C91 4273117 YP_748660.1 CDS Neut_2488 NC_008344.1 2616631 2618937 D PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: neu:NE1051 FtsK/SpoIIIE family:AAA ATPase superfamily; cell division protein FtsK 2616631..2618937 Nitrosomonas eutropha C91 4273118 YP_748661.1 CDS Neut_2489 NC_008344.1 2618997 2619617 D PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: neu:NE1052 outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA 2618997..2619617 Nitrosomonas eutropha C91 4273771 YP_748662.1 CDS Neut_2490 NC_008344.1 2619610 2620926 D PFAM: magnesium chelatase, ChlI subunit; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: neu:NE1053 uncharacterized ATPase related to the helicase subunit of the Holliday junction resolvase; recombination factor protein RarA 2619610..2620926 Nitrosomonas eutropha C91 4273772 YP_748663.1 CDS Neut_2491 NC_008344.1 2620954 2621628 R KEGG: neu:NE1056 lipoprotein releasing system ATP-binding ABC transporter; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; lipoprotein releasing system, ATP-binding protein complement(2620954..2621628) Nitrosomonas eutropha C91 4273773 YP_748664.1 CDS Neut_2492 NC_008344.1 2621621 2622868 R TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: neu:NE1057 DUF214; lipoprotein releasing system transmembrane protein complement(2621621..2622868) Nitrosomonas eutropha C91 4273774 YP_748665.1 CDS Neut_2493 NC_008344.1 2623007 2624071 R TIGRFAM: PEP motif putative anchor-like; KEGG: neu:NE1058 hypothetical protein; PEP motif-containing protein complement(2623007..2624071) Nitrosomonas eutropha C91 4273775 YP_748666.1 CDS Neut_2494 NC_008344.1 2624381 2624644 D KEGG: eba:p2A147 IS1480 transposase, fragment; hypothetical protein 2624381..2624644 Nitrosomonas eutropha C91 4273776 YP_748667.1 CDS Neut_2496 NC_008344.1 2625303 2625773 D PFAM: transposase, IS4 family protein; KEGG: eba:p2A101 putative transposase, fragment; transposase, IS4 family protein 2625303..2625773 Nitrosomonas eutropha C91 4273778 YP_748668.1 CDS Neut_2497 NC_008344.1 2625884 2626804 D PFAM: Integrase, catalytic region; KEGG: nwi:Nwi_2917 integrase, catalytic region; integrase catalytic subunit 2625884..2626804 Nitrosomonas eutropha C91 4273779 YP_748669.1 CDS Neut_2499 NC_008344.1 2627167 2627637 D PFAM: transposase, IS4 family protein; KEGG: eba:p2A101 putative transposase, fragment; transposase, IS4 family protein 2627167..2627637 Nitrosomonas eutropha C91 4273781 YP_748670.1 CDS Neut_2500 NC_008344.1 2629597 2629920 D KEGG: pol:Bpro_5203 transposase IS3/IS911; transposase IS3/IS911 2629597..2629920 Nitrosomonas eutropha C91 4273782 YP_748671.1 CDS Neut_2501 NC_008344.1 2629977 2630825 D PFAM: Integrase, catalytic region; KEGG: pol:Bpro_5204 integrase, catalytic region; integrase catalytic subunit 2629977..2630825 Nitrosomonas eutropha C91 4273783 YP_748672.1 CDS Neut_2502 NC_008344.1 2631376 2631846 R PFAM: transposase, IS4 family protein; KEGG: xcb:XC_2134 IS1480 transposase; transposase, IS4 family protein complement(2631376..2631846) Nitrosomonas eutropha C91 4273784 YP_748673.1 CDS Neut_2504 NC_008344.1 2632596 2633108 R hypothetical protein complement(2632596..2633108) Nitrosomonas eutropha C91 4273786 YP_748674.1 CDS Neut_2505 NC_008344.1 2633108 2634373 R PFAM: phage integrase family protein; KEGG: nmu:Nmul_A2184 phage integrase; phage integrase family protein complement(2633108..2634373) Nitrosomonas eutropha C91 4273787 YP_748675.1 CDS Neut_2506 NC_008344.1 2634988 2635638 R KEGG: neu:NE2546 haloacid dehalogenase/epoxide hydrolase family; TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; phosphoglycolate phosphatase complement(2634988..2635638) Nitrosomonas eutropha C91 4273360 YP_748676.1 CDS Neut_2507 NC_008344.1 2635667 2636425 R Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase complement(2635667..2636425) Nitrosomonas eutropha C91 4273361 YP_748677.1 CDS Neut_2508 NC_008344.1 2636600 2637295 R PFAM: OmpA/MotB domain protein; KEGG: neu:NE2548 bacterial outer membrane protein; ompA/MotB domain-containing protein complement(2636600..2637295) Nitrosomonas eutropha C91 4273362 YP_748678.1 CDS Neut_2509 NC_008344.1 2637654 2638412 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: neu:NE2549 ATPase component ABC-type multidrug transport system; ABC transporter-like protein 2637654..2638412 Nitrosomonas eutropha C91 4273363 YP_748679.1 CDS Neut_2510 NC_008344.1 2638409 2639155 D KEGG: neu:NE2550 putative ABC-2 type transport system permease protein; ABC transporter permease 2638409..2639155 Nitrosomonas eutropha C91 4273364 YP_748680.1 CDS Neut_2511 NC_008344.1 2639179 2640531 D KEGG: neu:NE2551 hypothetical protein; hypothetical protein 2639179..2640531 Nitrosomonas eutropha C91 4273365 YP_748681.1 CDS Neut_2512 NC_008344.1 2640577 2641392 D Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 2640577..2641392 Nitrosomonas eutropha C91 4273366 YP_748682.1 CDS Neut_2513 NC_008344.1 2641427 2642077 R KEGG: neu:NE2553 putative protein-disulfide isomerase; protein-disulfide isomerase complement(2641427..2642077) Nitrosomonas eutropha C91 4273367 YP_748683.1 CDS Neut_2514 NC_008344.1 2642077 2643891 R TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: neu:NE2554 GTP-binding elongation factor:elongation factor Tu domain 2; GTP-binding protein TypA complement(2642077..2643891) Nitrosomonas eutropha C91 4273368 YP_748684.1 CDS Neut_2515 NC_008344.1 2644024 2644629 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 2644024..2644629 Nitrosomonas eutropha C91 4273369 YP_748685.1 CDS Neut_2516 NC_008344.1 2644626 2645735 D bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein 2644626..2645735 Nitrosomonas eutropha C91 4273370 YP_748686.1 CDS ribH NC_008344.1 2645957 2646454 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 2645957..2646454 Nitrosomonas eutropha C91 4273371 YP_748687.1 CDS Neut_2518 NC_008344.1 2646451 2646954 D TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: neu:NE2558 antitermination protein NusB; NusB antitermination factor 2646451..2646954 Nitrosomonas eutropha C91 4273372 YP_748688.1 CDS Neut_2519 NC_008344.1 2647229 2648215 D TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein; KEGG: neu:NE2559 AIR synthase related protein; thiamine-monophosphate kinase 2647229..2648215 Nitrosomonas eutropha C91 4273373 YP_748689.1 CDS Neut_2520 NC_008344.1 2648193 2648735 D PFAM: phosphatidylglycerophosphatase A; KEGG: neu:NE2560 probable phosphatidyl-glycerophosphatase hydrolase transmembrane protein; phosphatidylglycerophosphatase A 2648193..2648735 Nitrosomonas eutropha C91 4273374 YP_748690.1 CDS Neut_2521 NC_008344.1 2648732 2649274 D PFAM: CinA domain protein; KEGG: neu:NE2561 competence-damaged protein; CinA domain-containing protein 2648732..2649274 Nitrosomonas eutropha C91 4273375 YP_748691.1 CDS Neut_2522 NC_008344.1 2649747 2650988 R PFAM: porin, Gram-negative type; KEGG: neu:NE2563 general diffusion gram-negative porins; porin complement(2649747..2650988) Nitrosomonas eutropha C91 4273875 YP_748692.1 CDS Neut_2523 NC_008344.1 2651312 2652931 R TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: neu:NE2564 ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase RecQ complement(2651312..2652931) Nitrosomonas eutropha C91 4273876 YP_748693.1 CDS Neut_2524 NC_008344.1 2652928 2653338 R PFAM: RNA-binding S4 domain protein; KEGG: neu:NE2565 S4 domain; RNA-binding S4 domain-containing protein complement(2652928..2653338) Nitrosomonas eutropha C91 4273877 YP_748694.1 CDS Neut_2525 NC_008344.1 2653335 2654168 R PFAM: protein of unknown function DUF81; KEGG: neu:NE2566 domain of unknown function DUF81; hypothetical protein complement(2653335..2654168) Nitrosomonas eutropha C91 4273878 YP_748695.1 CDS Neut_2526 NC_008344.1 2654176 2655858 R PFAM: protein of unknown function DUF442; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: neu:NE2567 hypothetical protein; hypothetical protein complement(2654176..2655858) Nitrosomonas eutropha C91 4273879 YP_748696.1 CDS Neut_2527 NC_008344.1 2655969 2656394 R PFAM: regulatory protein, ArsR; helix-turn-helix, HxlR type; KEGG: neu:NE2568 bacterial regulatory proteins, ArsR family; HxlR family transcriptional regulator complement(2655969..2656394) Nitrosomonas eutropha C91 4273880 YP_748697.1 CDS Neut_2528 NC_008344.1 2656391 2656858 R PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: neu:NE2569 probable transmembrane protein; hypothetical protein complement(2656391..2656858) Nitrosomonas eutropha C91 4273881 YP_748698.1 CDS Neut_2529 NC_008344.1 2656888 2657316 R PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: neu:NE2570 probable transmembrane protein; hypothetical protein complement(2656888..2657316) Nitrosomonas eutropha C91 4273882 YP_748699.1 CDS Neut_2530 NC_008344.1 2657425 2658288 D PFAM: beta-lactamase domain protein; KEGG: neu:NE2571 metallo-beta-lactamase superfamily; beta-lactamase domain-containing protein 2657425..2658288 Nitrosomonas eutropha C91 4273883 YP_748700.1 CDS Neut_2531 NC_008344.1 2658373 2658957 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: neu:NE2572 hypothetical protein; twin-arginine translocation pathway signal complement(2658373..2658957) Nitrosomonas eutropha C91 4273884 YP_748701.1 CDS Neut_2532 NC_008344.1 2659016 2660701 R PFAM: Peptidoglycan-binding domain 1 protein; KEGG: neu:NE2573 putative periplasmic protein; peptidoglycan binding domain-containing protein complement(2659016..2660701) Nitrosomonas eutropha C91 4273885 Neut_R0001 tRNA Neut_R0001 NC_008344.1 6613 6688 D tRNA-Gly 6613..6688 Nitrosomonas eutropha C91 4273722 Neut_R0002 tRNA Neut_R0002 NC_008344.1 123441 123514 D tRNA-Cys 123441..123514 Nitrosomonas eutropha C91 4272129 Neut_R0003 tRNA Neut_R0003 NC_008344.1 123540 123628 D tRNA-Leu 123540..123628 Nitrosomonas eutropha C91 4272130 Neut_R0004 tRNA Neut_R0004 NC_008344.1 210148 210233 R tRNA-Leu complement(210148..210233) Nitrosomonas eutropha C91 4272446 Neut_R0006 tRNA Neut_R0006 NC_008344.1 233340 233416 D tRNA-Ile 233340..233416 Nitrosomonas eutropha C91 4272283 Neut_R0007 tRNA Neut_R0007 NC_008344.1 233419 233494 D tRNA-Ala 233419..233494 Nitrosomonas eutropha C91 4272284 Neut_R0010 tRNA Neut_R0010 NC_008344.1 309741 309817 D tRNA-Met 309741..309817 Nitrosomonas eutropha C91 4273376 Neut_R0011 tRNA Neut_R0011 NC_008344.1 330649 330719 D tRNA-Gly 330649..330719 Nitrosomonas eutropha C91 4273830 Neut_R0012 tRNA Neut_R0012 NC_008344.1 391066 391141 R tRNA-Glu complement(391066..391141) Nitrosomonas eutropha C91 4273447 Neut_R0013 tRNA Neut_R0013 NC_008344.1 391167 391242 R tRNA-Ala complement(391167..391242) Nitrosomonas eutropha C91 4273448 Neut_R0014 tRNA Neut_R0014 NC_008344.1 594166 594241 D tRNA-Thr 594166..594241 Nitrosomonas eutropha C91 4272699 Neut_R0016 tRNA Neut_R0016 NC_008344.1 625149 625225 D tRNA-Val 625149..625225 Nitrosomonas eutropha C91 4272509 Neut_R0017 tRNA Neut_R0017 NC_008344.1 669807 669882 D tRNA-Val 669807..669882 Nitrosomonas eutropha C91 4273092 Neut_R0018 tRNA Neut_R0018 NC_008344.1 669942 670018 D tRNA-Asp 669942..670018 Nitrosomonas eutropha C91 4273093 Neut_R0019 tRNA Neut_R0019 NC_008344.1 841072 841148 R tRNA-Pro complement(841072..841148) Nitrosomonas eutropha C91 4272928 Neut_R0020 tRNA Neut_R0020 NC_008344.1 948549 948633 D tRNA-Leu 948549..948633 Nitrosomonas eutropha C91 4272800 Neut_R0021 tRNA Neut_R0021 NC_008344.1 972317 972392 R tRNA-Lys complement(972317..972392) Nitrosomonas eutropha C91 4271845 Neut_R0022 tRNA Neut_R0022 NC_008344.1 1155347 1155422 D tRNA-Thr 1155347..1155422 Nitrosomonas eutropha C91 4273600 Neut_R0023 tRNA Neut_R0023 NC_008344.1 1165765 1165855 R tRNA-Ser complement(1165765..1165855) Nitrosomonas eutropha C91 4272407 Neut_R0024 tRNA Neut_R0024 NC_008344.1 1179145 1179219 D tRNA-Gln 1179145..1179219 Nitrosomonas eutropha C91 4274105 Neut_R0025 tRNA Neut_R0025 NC_008344.1 1286397 1286472 R tRNA-Arg complement(1286397..1286472) Nitrosomonas eutropha C91 4271826 Neut_R0026 tRNA Neut_R0026 NC_008344.1 1329101 1329176 R tRNA-His complement(1329101..1329176) Nitrosomonas eutropha C91 4273938 Neut_R0027 tRNA Neut_R0027 NC_008344.1 1329228 1329304 R tRNA-Arg complement(1329228..1329304) Nitrosomonas eutropha C91 4271867 Neut_R0028 tRNA Neut_R0028 NC_008344.1 1329349 1329425 R tRNA-Pro complement(1329349..1329425) Nitrosomonas eutropha C91 4271868 Neut_R0029 tRNA Neut_R0029 NC_008344.1 1531916 1531992 D tRNA-Met 1531916..1531992 Nitrosomonas eutropha C91 4272668 Neut_R0030 tRNA Neut_R0030 NC_008344.1 1569828 1569903 R tRNA-Asn complement(1569828..1569903) Nitrosomonas eutropha C91 4273851 Neut_R0031 tRNA Neut_R0031 NC_008344.1 1654953 1655040 R tRNA-Ser complement(1654953..1655040) Nitrosomonas eutropha C91 4272045 Neut_R0032 tRNA Neut_R0032 NC_008344.1 1680127 1680213 R tRNA-Leu complement(1680127..1680213) Nitrosomonas eutropha C91 4272358 Neut_R0033 tRNA Neut_R0033 NC_008344.1 1702900 1702984 D tRNA-Leu 1702900..1702984 Nitrosomonas eutropha C91 4272108 Neut_R0034 tRNA Neut_R0034 NC_008344.1 1716702 1716777 D tRNA-Met 1716702..1716777 Nitrosomonas eutropha C91 4272495 Neut_R0035 tRNA Neut_R0035 NC_008344.1 1770642 1770717 R tRNA-Arg complement(1770642..1770717) Nitrosomonas eutropha C91 4273676 Neut_R0036 tRNA Neut_R0036 NC_008344.1 1856062 1856154 D tRNA-Ser 1856062..1856154 Nitrosomonas eutropha C91 4273168 Neut_R0037 tRNA Neut_R0037 NC_008344.1 1862463 1862537 D tRNA-Val 1862463..1862537 Nitrosomonas eutropha C91 4273142 Neut_R0038 tRNA Neut_R0038 NC_008344.1 1911730 1911805 R tRNA-Trp complement(1911730..1911805) Nitrosomonas eutropha C91 4272280 Neut_R0039 tRNA Neut_R0039 NC_008344.1 1913105 1913179 R tRNA-Thr complement(1913105..1913179) Nitrosomonas eutropha C91 4272741 Neut_R0040 tRNA Neut_R0040 NC_008344.1 1913215 1913288 R tRNA-Gly complement(1913215..1913288) Nitrosomonas eutropha C91 4272742 Neut_R0041 tRNA Neut_R0041 NC_008344.1 1913401 1913485 R tRNA-Tyr complement(1913401..1913485) Nitrosomonas eutropha C91 4272743 Neut_R0042 tRNA Neut_R0042 NC_008344.1 2193671 2193747 D tRNA-Arg 2193671..2193747 Nitrosomonas eutropha C91 4273217 Neut_R0043 tRNA Neut_R0043 NC_008344.1 2193816 2193891 D tRNA-Phe 2193816..2193891 Nitrosomonas eutropha C91 4273218 Neut_R0044 tRNA Neut_R0044 NC_008344.1 2205667 2205759 R tRNA-Ser complement(2205667..2205759) Nitrosomonas eutropha C91 4273198 Neut_R0045 tRNA Neut_R0045 NC_008344.1 2450231 2450307 R tRNA-Pro complement(2450231..2450307) Nitrosomonas eutropha C91 4272390 Neut_R0005 rRNA Neut_R0005 NC_008344.1 231716 233245 D 16S ribosomal RNA 231716..233245 Nitrosomonas eutropha C91 4272282 Neut_R0008 rRNA Neut_R0008 NC_008344.1 233643 236526 D 23S ribosomal RNA 233643..236526 Nitrosomonas eutropha C91 4272285 Neut_R0009 rRNA Neut_R0009 NC_008344.1 236593 236705 D 5S ribosomal RNA 236593..236705 Nitrosomonas eutropha C91 4272286