-- dump date 20140619_164620 -- class Genbank::CDS -- table cds_note -- id note YP_004693309.1 SMART: Chromosomal replication initiator, DnaA C-terminal; ATPase, AAA+ type, core; TIGRFAM: Chromosomal replication control, initiator DnaA; KEGG: nit:NAL212_0165 chromosomal replication initiator protein DnaA; HAMAP: Chromosomal replication control, initiator DnaA; PFAM: Chromosomal replication control, initiator (DnaA)/regulator (Hda); Chromosomal replication initiator, DnaA C-terminal YP_004693310.1 TIGRFAM: DNA polymerase III, beta chain; PFAM: DNA polymerase III, beta chain; KEGG: nit:NAL212_0166 DNA polymerase III, beta subunit; SMART: DNA polymerase III, beta chain YP_004693311.1 TIGRFAM: DNA gyrase, subunit B; PFAM: DNA topoisomerase, type IIA, subunit B, region 2; ATP-binding region, ATPase-like; Toprim domain; DNA topoisomerase, type IIA, subunit B, C-terminal; KEGG: nit:NAL212_0167 DNA gyrase, B subunit; SMART: DNA topoisomerase, type IIA, subunit B or N-terminal; ATP-binding region, ATPase-like YP_004693312.1 KEGG: SNF2-like protein; PFAM: SNF2-related; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004693313.1 PFAM: Abortive phage infection; KEGG: abortive phage infection protein YP_004693315.1 PFAM: Protein of unknown function DUF1016; KEGG: gpb:HDN1F_08370 protein of unknown function DUF1016 YP_004693316.1 PFAM: DNA methylase N-4/N-6; KEGG: avn:Avin_52350 adenine specific DNA methylase N-4/N-6 YP_004693317.1 KEGG: gpb:HDN1F_08410 hypothetical protein YP_004693318.1 PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: type III restriction protein res subunit YP_004693319.1 PFAM: WD40-like Beta Propeller; KEGG: neu:NE1761 hypothetical protein YP_004693320.1 KEGG: nit:NAL212_0169 GTP-binding protein TypA; TIGRFAM: GTP-binding protein TypA; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal YP_004693321.1 KEGG: bba:Bd3611 hypothetical protein YP_004693322.1 KEGG: nit:NAL212_0171 hypothetical protein YP_004693323.1 KEGG: nit:NAL212_0172 CutA1 divalent ion tolerance protein; manually curated; PFAM: Divalent ion tolerance protein, CutA1 YP_004693324.1 KEGG: nit:NAL212_0173 protein-disulfide reductase; HAMAP: Thiol:disulfide interchange protein dsbD; PFAM: Cytochrome c assembly protein, transmembrane region; Thioredoxin domain YP_004693325.1 PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: nit:NAL212_0174 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_004693326.1 PFAM: Transport-associated; KEGG: nit:NAL212_0175 transport-associated protein YP_004693327.1 KEGG: nit:NAL212_0176 hypothetical protein YP_004693328.1 KEGG: nit:NAL212_0177 PP-loop domain-containing protein; HAMAP: tRNA 2-thiocytidine biosynthesis protein TtcA; PFAM: PP-loop YP_004693329.1 PFAM: Blue (type 1) copper domain; KEGG: nit:NAL212_0178 blue (type 1) copper domain-containing protein YP_004693330.1 PFAM: Protein of unknown function DUF411; KEGG: nit:NAL212_0179 hypothetical protein YP_004693331.1 PFAM: Cytochrome c, class I; KEGG: nit:NAL212_0180 cytochrome c class I YP_004693332.1 KEGG: nit:NAL212_0181 hypothetical protein YP_004693333.1 KEGG: net:Neut_0492 transport-associated; PFAM: Transport-associated; SMART: Transport-associated and nodulation region, bacteria YP_004693334.1 PFAM: Glycosyltransferase 36; carbohydrate binding; Glycosyltransferase 36 associated; KEGG: net:Neut_1665 glycosyltransferase 36 YP_004693335.1 KEGG: net:Neut_2089 transaldolase; TIGRFAM: Transaldolase subfamily; PFAM: Transaldolase YP_004693336.1 PFAM: Protein of unknown function DUF1840; KEGG: net:Neut_0486 hypothetical protein YP_004693337.1 KEGG: fri:FraEuI1c_1222 6-phosphogluconate dehydrogenase, decarboxylating; TIGRFAM: 6-phosphogluconate dehydrogenase related protein; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase, C-terminal YP_004693338.1 KEGG: rfr:Rfer_4034 glucose-6-phosphate 1-dehydrogenase; TIGRFAM: Glucose-6-phosphate dehydrogenase; PFAM: Glucose-6-phosphate dehydrogenase YP_004693339.1 PFAM: Protein of unknown function DUF1840; KEGG: net:Neut_0486 hypothetical protein YP_004693340.1 KEGG: rfr:Rfer_1145 phosphoglucomutase; TIGRFAM: Phosphoglucomutase, alpha-D-glucose specific; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal YP_004693341.1 KEGG: dat:HRM2_24160 GlgP3; TIGRFAM: Alpha-glucan phosphorylase; PFAM: Glycosyl transferase, family 35 YP_004693342.1 KEGG: magnesium-importing ATPase; TIGRFAM: ATPase, P-type, magnesium-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: ATPase, P-type, ATPase-associated region; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase; ATPase, P-type cation-transporter, C-terminal YP_004693343.1 TIGRFAM: Acetate kinase; HAMAP: Acetate kinase; KEGG: nha:Nham_4372 acetate kinase; PFAM: Acetate/butyrate kinase YP_004693344.1 KEGG: dba:Dbac_1358 phosphoketolase; HAMAP: phosphoketolase; PFAM: Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, N-terminal; Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase; Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, C-terminal YP_004693345.1 KEGG: dba:Dbac_0953 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF2254, membrane YP_004693346.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Alternate ATPase, F1 complex, beta subunit; ATPase, F1 complex, beta subunit; KEGG: rfr:Rfer_1161 F0F1 ATP synthase subunit beta; HAMAP: ATPase, F1 complex, beta subunit; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal YP_004693347.1 KEGG: rfr:Rfer_1162 F0F1 ATP synthase subunit epsilon; TIGRFAM: alternate F1F0 ATPase, F1 subunit epsilon; PFAM: ATPase, F1 complex, delta/epsilon subunit, N-terminal YP_004693348.1 KEGG: mmw:Mmwyl1_1956 F0F1-ATPase subunit; TIGRFAM: F0F1-ATPase subunit, PFAM: F0F1-ATPase subunit YP_004693349.1 TIGRFAM: ATPase, F1/F0 complex, subunit 2, Methanosarcina type; KEGG: dba:Dbac_0949 F1/F0 ATPase YP_004693350.1 TIGRFAM: Alternate ATPase, F0 complex, subunit A; ATPase, F0 complex, subunit A; HAMAP: ATP synthase subunit a; KEGG: rfr:Rfer_1165 F0F1 ATP synthase subunit A; PFAM: ATPase, F0 complex, subunit A YP_004693351.1 TIGRFAM: Alternate ATPase, F0 complex, subunit C; ATPase, F0 complex, subunit C, bacterial/chloroplast; HAMAP: ATPase, F0 complex, subunit C; KEGG: mmw:Mmwyl1_1959 F0F1 ATP synthase subunit C; PFAM: ATPase, F0/V0 complex, subunit C YP_004693352.1 TIGRFAM: Alternate ATPase, F0 complex, subunit B; HAMAP: ATP synthase subunit b; KEGG: rfr:Rfer_1167 H+-transporting two-sector ATPase, B/B' subunit; PFAM: ATPase, F0 complex, subunit B/B', bacterial/chloroplast YP_004693353.1 TIGRFAM: Alternate ATPase, F1 complex, alpha subunit; ATPase, F1 complex, alpha subunit; HAMAP: ATPase, F1 complex, alpha subunit; KEGG: rfr:Rfer_1168 F0F1 ATP synthase subunit alpha; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal YP_004693354.1 KEGG: dba:Dbac_0944 alternate F1F0 ATPase, F1 subunit gamma; TIGRFAM: Alternate ATPase, F1 complex, subunit gamma; PFAM: ATPase, F1 complex, gamma subunit YP_004693355.1 KEGG: app:CAP2UW1_3404 UTP-glucose-1-phosphate uridylyltransferase; TIGRFAM: UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal type; PFAM: Nucleotidyl transferase YP_004693356.1 PFAM: Cell wall hydrolase, SleB; KEGG: nit:NAL212_3139 cell wall hydrolase SleB YP_004693357.1 KEGG: nit:NAL212_0062 transposase IS66; manually curated; PFAM: Transposase, IS66 YP_004693358.1 KEGG: nit:NAL212_0063 IS66 Orf2 family protein; manually curated; PFAM: Transposase (), IS66 Orf2 like YP_004693359.1 KEGG: nit:NAL212_0064 hypothetical protein YP_004693360.1 KEGG: nit:NAL212_1338 PEP motif anchor domain-containing protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_004693361.1 KEGG: nit:NAL212_2784 catalase related subgroup domain-containing protein YP_004693362.1 PFAM: Protein of unknown function DUF1207; KEGG: neu:NE1230 hypothetical protein YP_004693363.1 KEGG: har:HEAR2625 lipoprotein YP_004693364.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS fold; Signal transduction response regulator, receiver region; KEGG: tsa:AciPR4_0617 response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS; Signal transduction response regulator, receiver region YP_004693365.1 PFAM: Protein of unknown function DUF2063; Protein of unknown function DUF692; KEGG: nmu:Nmul_A2549 hypothetical protein YP_004693366.1 KEGG: mca:MCA0084 hypothetical protein YP_004693367.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: shw:Sputw3181_2243 OmpA/MotB domain-containing protein YP_004693368.1 KEGG: hypothetical protein YP_004693369.1 PFAM: Cyclic nucleotide-binding; KEGG: cyclic nucleotide-binding domain-containing protein YP_004693370.1 KEGG: net:Neut_0491 transcriptional regulator, Crp/Fnr family protein; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp YP_004693371.1 KEGG: cli:Clim_0907 hypothetical protein YP_004693372.1 KEGG: har:HEAR0765 hypothetical protein YP_004693373.1 KEGG: net:Neut_0490 hypothetical protein YP_004693374.1 KEGG: net:Neut_0488 hypothetical protein YP_004693375.1 KEGG: nit:NAL212_1623 hypothetical protein YP_004693376.1 PFAM: Uncharacterised protein family UPF0118; KEGG: nit:NAL212_2783 hypothetical protein YP_004693377.1 PFAM: Protein of unknown function DUF883, ElaB; KEGG: nit:NAL212_2781 hypothetical protein YP_004693378.1 KEGG: nit:NAL212_2780 hypothetical protein YP_004693379.1 PFAM: Ketopantoate reductase ApbA/PanE, C-terminal; Ketopantoate reductase ApbA/PanE, N-terminal; KEGG: nit:NAL212_1794 ketopantoate reductase ApbA/PanE domain-containing protein YP_004693380.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: nit:NAL212_1793 NAD-dependent epimerase/dehydratase YP_004693381.1 KEGG: net:Neut_2188 arginine decarboxylase; TIGRFAM: Arginine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2 YP_004693382.1 KEGG: net:Neut_2187 agmatinase; TIGRFAM: agmatinase; PFAM: Ureohydrolase YP_004693383.1 KEGG: nit:NAL212_2786 hypothetical protein YP_004693384.1 KEGG: dar:Daro_2088 hypothetical protein YP_004693385.1 PFAM: PRC-barrel; KEGG: net:Neut_2352 PRC-barrel domain-containing protein YP_004693386.1 PFAM: Protein of unknown function DUF883, ElaB; KEGG: nit:NAL212_2781 hypothetical protein YP_004693387.1 KEGG: nmu:Nmul_A2420 hypothetical protein YP_004693388.1 KEGG: rfr:Rfer_1879 hypothetical protein YP_004693389.1 PFAM: Fatty acid desaturase, type 1; KEGG: net:Neut_0779 fatty acid desaturase YP_004693390.1 KEGG: mep:MPQ_2599 transcriptional regulator, crp/fnr family; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding YP_004693391.1 TIGRFAM: ABC transporter ATP-binding subunit, DevA type; PFAM: ABC transporter-like; KEGG: cyh:Cyan8802_3799 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004693392.1 KEGG: ana:alr3711 heterocyst specific ABC-transporter, membrane spanning subunit; TIGRFAM: DevC protein; PFAM: Protein of unknown function DUF214, permase predicted YP_004693393.1 TIGRFAM: ABC transporter membrane fusion protein, DevB type; KEGG: cyn:Cyan7425_0330 DevB family ABC exporter membrane fusion protein YP_004693394.1 PFAM: Sulphatase-modifying factor; NACHT nucleoside triphosphatase; KEGG: app:CAP2UW1_2323 hypothetical protein YP_004693395.1 PFAM: NTP pyrophosphohydrolase MazG, catalytic core; KEGG: nit:NAL212_3178 MazG nucleotide pyrophosphohydrolase YP_004693396.1 PFAM: Methyltransferase small; KEGG: nit:NAL212_3177 methyltransferase small YP_004693397.1 KEGG: nit:NAL212_3176 DEAD/DEAH box helicase domain-containing protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004693398.1 PFAM: Protein of unknown function DUF192; KEGG: nit:NAL212_3175 hypothetical protein YP_004693399.1 KEGG: nit:NAL212_3174 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein YP_004693400.1 KEGG: nit:NAL212_3173 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004693401.1 KEGG: nit:NAL212_3171 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004693402.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; GAF; KEGG: eba:ebA163 sensory box/GGDEF family protein; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; GAF YP_004693403.1 TIGRFAM: Glucose-inhibited division protein A; HAMAP: Glucose-inhibited division protein A; KEGG: nit:NAL212_3161 glucose inhibited division protein A; PFAM: Glucose-inhibited division protein A-related YP_004693404.1 TIGRFAM: rRNA small subunit methyltransferase G; HAMAP: rRNA small subunit methyltransferase G; KEGG: nit:NAL212_3160 methyltransferase GidB; PFAM: rRNA small subunit methyltransferase G YP_004693405.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: nit:NAL212_3159 cobyrinic acid ac-diamide synthase YP_004693406.1 TIGRFAM: ParB-like partition protein; PFAM: ParB-like nuclease; KEGG: nit:NAL212_3158 ParB-like partition protein; SMART: ParB-like nuclease YP_004693407.1 KEGG: nit:NAL212_3157 hypothetical protein; HAMAP: UPF0434 protein ycaR; PFAM: Protein of unknown function DUF343 YP_004693408.1 PFAM: ADP-ribosylation/Crystallin J1; KEGG: nit:NAL212_3156 ADP-ribosylation/crystallin J1 YP_004693409.1 PFAM: HpcH/HpaI aldolase; KEGG: nit:NAL212_0420 citryl-CoA lyase YP_004693410.1 TIGRFAM: Succinyl-CoA synthetase, beta subunit; HAMAP: Succinyl-CoA ligase [ADP-forming] subunit beta; KEGG: nit:NAL212_0421 succinyl-CoA ligase (ADP-forming) subunit beta; PFAM: ATP-grasp fold, succinyl-CoA synthetase-type; ATP-citrate lyase/succinyl-CoA ligase YP_004693411.1 KEGG: nit:NAL212_0422 succinyl-CoA synthetase, alpha subunit; TIGRFAM: Succinyl-CoA ligase, alpha subunit; PFAM: CoA-binding; ATP-citrate lyase/succinyl-CoA ligase YP_004693412.1 TIGRFAM: Uncharacterised protein family UPF0114, bacteria; HAMAP: Uncharacterised protein family UPF0114, gammaproteobacteria; KEGG: nit:NAL212_0425 hypothetical protein; PFAM: Uncharacterised protein family UPF0114, prokaryotic YP_004693413.1 KEGG: nit:NAL212_0427 CinA domain-containing protein; TIGRFAM: CinA, C-terminal; PFAM: CinA, C-terminal YP_004693414.1 PFAM: Acyltransferase 3; KEGG: mms:mma_0056 hypothetical protein YP_004693415.1 KEGG: mpt:Mpe_A2251 hypothetical protein YP_004693416.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: nit:NAL212_0428 hypothetical protein YP_004693417.1 PFAM: Protein of unknown function DUF2141; KEGG: nit:NAL212_0429 hypothetical protein YP_004693418.1 PFAM: DNA methylase, adenine-specific; KEGG: slt:Slit_2437 N-6 DNA methylase YP_004693419.1 PFAM: Restriction endonuclease, type I, S subunit, EcoBI; KEGG: gfo:GFO_2591 type I restriction-modification system DNA specificity subunit YP_004693420.1 PFAM: PilT protein, N-terminal; KEGG: nit:NAL212_0432 PilT protein domain-containing protein YP_004693421.1 TIGRFAM: Prevent-host-death protein; KEGG: nit:NAL212_0433 prevent-host-death family protein YP_004693422.1 PFAM: Filamentation induced by cAMP/death on curing, related; KEGG: cch:Cag_2003 fic family protein YP_004693423.1 TIGRFAM: Restriction endonuclease, type I, EcoRI, R subunit; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: nit:NAL212_0436 type I site-specific deoxyribonuclease, HsdR family; SMART: DEAD-like helicase, N-terminal YP_004693424.1 KEGG: nit:NAL212_2929 twitching motility protein; TIGRFAM: Pilus retraction protein PilT; PFAM: Type II secretion system protein E YP_004693425.1 TIGRFAM: Pilus retraction protein PilT; PFAM: Type II secretion system protein E; KEGG: nit:NAL212_2928 twitching motility protein; SMART: ATPase, AAA+ type, core YP_004693426.1 PFAM: Diguanylate phosphodiesterase, predicted; Metal-dependent hydrolase HDOD; KEGG: nit:NAL212_0455 diguanylate phosphodiesterase metal dependent hydrolase domain YP_004693427.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: nit:NAL212_0454 metal dependent phosphohydrolase YP_004693428.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: nit:NAL212_0453 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_004693429.1 TIGRFAM: Coenzyme A biosynthesis protein; Cytidyltransferase-related; HAMAP: Coenzyme A biosynthesis protein; KEGG: nit:NAL212_0452 pantetheine-phosphate adenylyltransferase; PFAM: Cytidylyltransferase YP_004693430.1 KEGG: nit:NAL212_0451 methyltransferase; TIGRFAM: Conserved hypothetical protein CHP00095; PFAM: Protein of unknown function methylase YP_004693431.1 PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; KEGG: nit:NAL212_0450 peptidase M16 domain-containing protein YP_004693432.1 KEGG: nit:NAL212_0449 phosphoenolpyruvate carboxylase; HAMAP: Phosphoenolpyruvate carboxylase; PFAM: Phosphoenolpyruvate carboxylase YP_004693433.1 TIGRFAM: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; HAMAP: Porphobilinogen deaminase; KEGG: nit:NAL212_0448 porphobilinogen deaminase; PFAM: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase YP_004693434.1 PFAM: Tetrapyrrole biosynthesis, uroporphyrinogen III synthase; KEGG: nit:NAL212_0447 uroporphyrinogen III synthase HEM4 YP_004693435.1 PFAM: HemY, N-terminal; KEGG: nit:NAL212_0446 HemY domain-containing protein YP_004693436.1 PFAM: Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase FAD-binding region; Ferredoxin; KEGG: nit:NAL212_0445 ferredoxin--NAD(+) reductase YP_004693437.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: nit:NAL212_0444 NAD-dependent epimerase/dehydratase YP_004693438.1 PFAM: Type II secretion system F domain; KEGG: nit:NAL212_0443 type II secretion system F domain YP_004693439.1 PFAM: Peptidase A24A, N-terminal; Peptidase A24A, prepilin type IV; KEGG: nit:NAL212_0442 prepilin peptidase YP_004693440.1 KEGG: nit:NAL212_0441 dephospho-CoA kinase; TIGRFAM: Dephospho-CoA kinase; HAMAP: Dephospho-CoA kinase YP_004693441.1 KEGG: nit:NAL212_0440 hypothetical protein; HAMAP: UPF0289 protein yacF; PFAM: Protein of unknown function DUF1342 YP_004693442.1 KEGG: nit:NAL212_0456 cyanophycin synthetase; TIGRFAM: Cyanophycin synthetase; PFAM: Mur ligase, central; ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type; Mur ligase, C-terminal YP_004693443.1 KEGG: nit:NAL212_0457 cyanophycin synthetase; TIGRFAM: Cyanophycin synthetase; PFAM: Carbamoyl phosphate synthetase, large subunit, ATP-binding; Mur ligase, central YP_004693444.1 PFAM: Integrase, catalytic core; KEGG: ppu:PP_4459 transposase YP_004693445.1 PFAM: Protein of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated region; KEGG: nit:NAL212_0458 hypothetical protein YP_004693446.1 KEGG: nit:NAL212_0462 riboflavin synthase, alpha subunit; TIGRFAM: Lumazine-binding protein; PFAM: Lumazine-binding protein YP_004693447.1 TIGRFAM: DHBP synthase RibB; HAMAP: 3,4-dihydroxy-2-butanone 4-phosphate synthase; KEGG: nit:NAL212_0463 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: DHBP synthase RibB; GTP cyclohydrolase II YP_004693448.1 TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; HAMAP: 6,7-dimethyl-8-ribityllumazine synthase; KEGG: nit:NAL212_0464 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 6,7-dimethyl-8-ribityllumazine synthase YP_004693449.1 TIGRFAM: NusB antitermination factor; HAMAP: N utilization substance protein B-like protein; KEGG: nit:NAL212_0465 NusB antitermination factor; PFAM: NusB/RsmB/TIM44 YP_004693450.1 KEGG: nit:NAL212_0466 thiamine-monophosphate kinase; TIGRFAM: Thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein, C-terminal YP_004693451.1 PFAM: Phosphatidylglycerophosphatase A; KEGG: nit:NAL212_0467 phosphatidylglycerophosphatase A YP_004693452.1 PFAM: Protein of unknown function DUF466; KEGG: nit:NAL212_0284 hypothetical protein YP_004693453.1 PFAM: Carbon starvation protein CstA; KEGG: nit:NAL212_0285 carbon starvation protein CstA YP_004693454.1 KEGG: nit:NAL212_0468 anion transporter; TIGRFAM: Sodium/sulphate symporter; PFAM: Sodium/sulphate symporter YP_004693455.1 KEGG: nit:NAL212_0653 diguanylate phosphodiesterase; PFAM: Diguanylate phosphodiesterase, predicted; PAS fold-4; SMART: Diguanylate phosphodiesterase, predicted YP_004693456.1 PFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; KEGG: nit:NAL212_0654 2,3-bisphosphoglycerate-independent phosphoglycerate mutase YP_004693457.1 KEGG: nit:NAL212_0655 isocitrate dehydrogenase, NADP-dependent; TIGRFAM: Isocitrate dehydrogenase NADP-dependent, prokaryotic; PFAM: Isocitrate/isopropylmalate dehydrogenase YP_004693458.1 KEGG: nmu:Nmul_A2246 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein YP_004693459.1 KEGG: nit:NAL212_0658 ATP-dependent Clp protease adaptor protein ClpS; HAMAP: ATP-dependent Clp protease adapter protein clpS; PFAM: Adaptor protein ClpS, core YP_004693460.1 TIGRFAM: ATP-dependent Clp protease ATP-binding subunit clpA; PFAM: ATPase associated with various cellular activities, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; KEGG: nit:NAL212_0659 ATP-dependent Clp protease, ATP-binding subunit ClpA; SMART: ATPase, AAA+ type, core YP_004693461.1 PFAM: Transposase, IS4-like; KEGG: tin:Tint_1940 transposase IS4 family protein YP_004693462.1 PFAM: Transposase, IS4-like; KEGG: afe:Lferr_1749 hypothetical protein YP_004693463.1 KEGG: afr:AFE_2095 hypothetical protein YP_004693464.1 PFAM: Transposase, IS4-like; KEGG: gur:Gura_1234 hypothetical protein YP_004693465.1 PFAM: Transposase, IS4-like; KEGG: tgr:Tgr7_1308 ISRSO18-transposase YP_004693467.1 PFAM: Serine hydroxymethyltransferase; KEGG: nit:NAL212_2908 glycine hydroxymethyltransferase YP_004693468.1 TIGRFAM: Ribonucleotide reductase regulator NrdR-like; HAMAP: Transcriptional repressor nrdR; KEGG: nit:NAL212_2907 ribonucleotide reductase regulator NrdR-like protein; PFAM: ATP-cone YP_004693469.1 TIGRFAM: Riboflavin biosynthesis protein RibD; Riboflavin-specific deaminase, C-terminal; KEGG: nit:NAL212_2906 riboflavin biosynthesis protein RibD; PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; CMP/dCMP deaminase, zinc-binding YP_004693470.1 KEGG: nit:NAL212_2905 two component transcriptional regulator, Fis family; PFAM: Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region YP_004693471.1 KEGG: nit:NAL212_2904 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004693472.1 PFAM: DAHP synthetase I/KDSA; KEGG: nit:NAL212_2903 3-deoxy-7-phosphoheptulonate synthase YP_004693473.1 TIGRFAM: LytB protein; HAMAP: LytB protein; KEGG: nit:NAL212_2902 hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein YP_004693474.1 KEGG: nit:NAL212_2901 glycine oxidase ThiO; TIGRFAM: Glycine oxidase ThiO; PFAM: FAD dependent oxidoreductase YP_004693475.1 KEGG: nit:NAL212_2900 general secretion pathway, GspH YP_004693476.1 TIGRFAM: Pilus modification type IV, PilV; Prepilin-type cleavage/methylation, N-terminal; KEGG: nit:NAL212_2899 type IV pilus modification protein PilV YP_004693477.1 KEGG: nit:NAL212_2898 Tfp pilus assembly protein PilW YP_004693478.1 KEGG: nit:NAL212_2897 hypothetical protein YP_004693479.1 PFAM: Neisseria PilC; KEGG: nit:NAL212_2896 PilC domain-containing protein YP_004693480.1 KEGG: nit:NAL212_2895 fimbrial protein pilin YP_004693481.1 KEGG: nit:NAL212_0182 phosphate uptake regulator, PhoU; TIGRFAM: PhoU; PFAM: PhoU YP_004693482.1 TIGRFAM: Ribose 5-phosphate isomerase; HAMAP: Ribose-5-phosphate isomerase, subgroup; KEGG: nit:NAL212_0183 ribose 5-phosphate isomerase; PFAM: Ribose 5-phosphate isomerase YP_004693483.1 PFAM: Transposase, IS4-like; KEGG: nit:NAL212_2951 transposase IS4 family protein YP_004693484.1 KEGG: rpf:Rpic12D_1515 heat shock protein DnaJ domain-containing protein YP_004693485.1 PFAM: Protein of unknown function DUF1486; KEGG: nit:NAL212_0470 hypothetical protein YP_004693486.1 KEGG: nit:NAL212_0471 hypothetical protein; HAMAP: UPF0246 protein yaaA; PFAM: Protein of unknown function DUF328 YP_004693487.1 PFAM: Transposase, IS4-like; KEGG: cph:Cpha266_2339 transposase, IS4 family protein YP_004693488.1 TIGRFAM: Peptidase S1C, Do; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; KEGG: nhl:Nhal_1160 protease Do; SMART: PDZ/DHR/GLGF YP_004693489.1 KEGG: nit:NAL212_0594 amidohydrolase; TIGRFAM: Peptidase M20D, amidohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation YP_004693490.1 TIGRFAM: Prevent-host-death protein; KEGG: nit:NAL212_0596 prevent-host-death family protein YP_004693491.1 KEGG: neu:NE1584 hypothetical protein; TIGRFAM: Addiction module toxin, RelE/StbE; PFAM: Plasmid stabilisation system YP_004693492.1 KEGG: ava:Ava_0768 hypothetical protein YP_004693493.1 PFAM: Protein of unknown function DUF497; KEGG: cyc:PCC7424_5048 protein of unknown function DUF497 YP_004693495.1 PFAM: Protein of unknown function DUF2191; KEGG: nhl:Nhal_3638 hypothetical protein YP_004693496.1 KEGG: ccs:CCNA_01861 hypothetical protein YP_004693497.1 TIGRFAM: Transcription-repair coupling factor; PFAM: Transcription factor CarD; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; Transcription-repair-coupling factor; KEGG: nit:NAL212_0605 transcription-repair coupling factor; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004693498.1 KEGG: nit:NAL212_0606 hypothetical protein YP_004693499.1 PFAM: Phosphoglycerate mutase; KEGG: nit:NAL212_0607 phosphoglycerate mutase YP_004693500.1 TIGRFAM: Prevent-host-death protein; KEGG: gur:Gura_2397 prevent-host-death family protein YP_004693501.1 PFAM: PilT protein, N-terminal; KEGG: gur:Gura_2398 PilT domain-containing protein YP_004693502.1 PFAM: MgtC/SapB transporter; KEGG: nit:NAL212_0496 MgtC/SapB transporter YP_004693503.1 KEGG: nit:NAL212_0497 single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: Bacterial RecJ exonuclease; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1 YP_004693504.1 PFAM: Cystathionine beta-synthase, core; Transporter-associated region; KEGG: nit:NAL212_0498 transporter-associated region YP_004693505.1 TIGRFAM: Uncharacterised protein family UPF0054; HAMAP: Uncharacterised protein family UPF0054; KEGG: nit:NAL212_0499 hypothetical protein; PFAM: Uncharacterised protein family UPF0054 YP_004693506.1 PFAM: PhoH-like protein; KEGG: nit:NAL212_0500 PhoH family protein YP_004693507.1 KEGG: nit:NAL212_0501 (dimethylallyl)adenosine tRNA methylthiotransferase MiaB; PFAM: Methylthiotransferase, N-terminal; Radical SAM; Deoxyribonuclease/rho motif-related TRAM; manually curated; TIGRFAM: tRNA-i(6)A37 modification enzyme MiaB; Methylthiotransferase; SMART: Elongator protein 3/MiaB/NifB; HAMAP: tRNA-i(6)A37 modification enzyme MiaB YP_004693508.1 KEGG: nit:NAL212_0502 hypothetical protein YP_004693509.1 KEGG: noc:Noc_1205 hypothetical protein; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; SMART: DEAD-like helicase, N-terminal YP_004693510.1 PFAM: Restriction endonuclease, type I, S subunit, EcoBI; KEGG: ipo:Ilyop_0907 restriction modification system DNA specificity domain protein YP_004693511.1 KEGG: app:CAP2UW1_4295 hypothetical protein YP_004693512.1 KEGG: app:CAP2UW1_4296 Appr-1-p processing domain-containing protein; PFAM: Appr-1-p processing; SMART: Appr-1-p processing YP_004693513.1 PFAM: DNA methylase, adenine-specific; KEGG: noc:Noc_1201 N-6 DNA methylase YP_004693515.1 TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial; KEGG: nit:NAL212_3091 hypothetical protein YP_004693516.1 KEGG: nit:NAL212_0631 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6; PFAM: FAD dependent oxidoreductase YP_004693517.1 PFAM: Disulphide bond isomerase, DsbC/G, N-terminal; KEGG: nit:NAL212_0630 disulfide bond isomerase, DsbC/G YP_004693518.1 PFAM: Transposase, IS4-like; KEGG: afe:Lferr_1749 hypothetical protein YP_004693519.1 PFAM: MltA; 3D; KEGG: nit:NAL212_0629 MltA domain-containing protein YP_004693520.1 KEGG: nit:NAL212_0628 NGG1p interacting factor 3 protein, NIF3; TIGRFAM: NGG1p interacting factor 3, NIF3; PFAM: NGG1p interacting factor 3, NIF3 YP_004693521.1 KEGG: nit:NAL212_0627 HtrA2 peptidase; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF YP_004693522.1 KEGG: nit:NAL212_0626 biopterin transport-like protein BT1 YP_004693523.1 TIGRFAM: Competence protein ComEA, helix-hairpin-helix region; PFAM: Helix-hairpin-helix motif; KEGG: nit:NAL212_0625 competence protein ComEA helix-hairpin-helix repeat-containing protein; SMART: Helix-hairpin-helix DNA-binding motif, class 1 YP_004693524.1 KEGG: nit:NAL212_0624 cysteine synthase; TIGRFAM: Cysteine synthase B; Cysteine synthase K/M; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit YP_004693525.1 KEGG: nit:NAL212_0623 tol-pal system-associated acyl-CoA thioesterase; TIGRFAM: Tol-Pal system-associated acyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase; PFAM: Thioesterase superfamily YP_004693526.1 KEGG: nit:NAL212_0622 protein TolQ; TIGRFAM: Tol-Pal system, TolQ; PFAM: MotA/TolQ/ExbB proton channel YP_004693527.1 KEGG: nit:NAL212_0621 protein TolR; TIGRFAM: Biopolymer transport, TolR; PFAM: Biopolymer transport protein ExbD/TolR YP_004693528.1 TIGRFAM: Tol-Pal system, TolA; KEGG: nit:NAL212_0620 protein TolA YP_004693529.1 TIGRFAM: Tol-Pal system beta propeller repeat-containing protein, TolB; HAMAP: Tol-Pal system beta propeller repeat-containing protein, TolB; KEGG: nit:NAL212_0619 Tol-Pal system beta propeller repeat-containing protein TolB; PFAM: TolB, N-terminal; WD40-like Beta Propeller YP_004693530.1 KEGG: nit:NAL212_0618 peptidoglycan-associated lipoprotein; TIGRFAM: Peptidoglycan-associated lipoprotein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal YP_004693531.1 TIGRFAM: Tol-Pal system, YbgF; KEGG: nit:NAL212_0617 tol-pal system protein YbgF YP_004693532.1 PFAM: Radical SAM; KEGG: nit:NAL212_0616 radical SAM domain-containing protein YP_004693533.1 KEGG: nit:NAL212_0615 ExsB protein; TIGRFAM: Exoenzyme S synthesis protein B/queuosine synthesis; PFAM: Queuosine synthesis-like YP_004693534.1 KEGG: nit:NAL212_3147 ferric uptake regulator, Fur family YP_004693535.1 KEGG: nit:NAL212_3148 hypothetical protein YP_004693536.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: nit:NAL212_3150 TonB-dependent receptor YP_004693537.1 KEGG: nit:NAL212_2874 adenylate/guanylate cyclase with CHASE sensor; PFAM: CHASE2; Adenylyl cyclase class-3/4/guanylyl cyclase; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase YP_004693538.1 PFAM: TonB-dependent receptor, beta-barrel; FecR protein; Tetratricopeptide TPR-1; KEGG: nit:NAL212_2875 FecR protein YP_004693540.1 TIGRFAM: Inorganic H+ pyrophosphatase; HAMAP: Pyrophosphate-energized proton pump; KEGG: nit:NAL212_2938 V-type H(+)-translocating pyrophosphatase; PFAM: Inorganic H+ pyrophosphatase YP_004693541.1 PFAM: Phosphofructokinase; KEGG: nit:NAL212_2937 phosphofructokinase YP_004693542.1 PFAM: Adenylate kinase; Adenylate kinase, zinc-finger lid region; manually curated; TIGRFAM: Adenylate kinase, subfamily; KEGG: nit:NAL212_2936 adenylate kinase; HAMAP: Adenylate kinase YP_004693543.1 SMART: ATPase, AAA+ type, core; TIGRFAM: DNA recombination and repair protein RecA; KEGG: nit:NAL212_2935 RecA protein; HAMAP: DNA recombination and repair protein RecA; PFAM: DNA recombination and repair protein RecA YP_004693544.1 KEGG: nit:NAL212_2934 regulatory protein RecX; HAMAP: Regulatory protein recX; PFAM: Regulatory protein RecX YP_004693545.1 KEGG: nit:NAL212_2933 hypothetical protein YP_004693546.1 KEGG: nit:NAL212_2932 alanyl-tRNA synthetase; TIGRFAM: Alanyl-tRNA synthetase, class IIc; PFAM: Alanyl-tRNA synthetase, class IIc, N-terminal; Threonyl/alanyl tRNA synthetase, SAD; Phosphoesterase, DHHA1 YP_004693547.1 PFAM: Polyketide cyclase/dehydrase; KEGG: mms:mma_1843 hypothetical protein YP_004693548.1 PFAM: Integrase, catalytic core, phage; KEGG: nit:NAL212_3061 integrase YP_004693549.1 KEGG: slt:Slit_1766 addiction module killer protein; TIGRFAM: Addiction module killer protein, HI1419; PFAM: Protein of unknown function DUF891 YP_004693550.1 TIGRFAM: Addiction module antidote protein, HI1420; KEGG: dma:DMR_p1_00500 hypothetical protein YP_004693552.1 KEGG: tin:Tint_1141 hypothetical protein YP_004693553.1 KEGG: nit:NAL212_3065 hypothetical protein YP_004693554.1 KEGG: pth:PTH_2877 hypothetical protein YP_004693555.1 KEGG: wch:wcw_0673 hypothetical protein; PFAM: RNA polymerase sigma factor 70, region 4 type 2; SMART: ATPase, AAA+ type, core YP_004693557.1 KEGG: nit:NAL212_1959 hypothetical protein YP_004693558.1 KEGG: nit:NAL212_3072 hypothetical protein YP_004693559.1 KEGG: msl:Msil_3100 protein of unknown function DUF955 YP_004693561.1 KEGG: nit:NAL212_3075 RNA polymerase, sigma 70 subunit, RpoD; TIGRFAM: RNA polymerase sigma factor RpoD, C-terminal; RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, non-essential region; RNA polymerase sigma factor 70, region 1.1; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 4 YP_004693562.1 KEGG: nit:NAL212_3076 DNA primase; TIGRFAM: DNA primase, DnaG; PFAM: DNA primase, catalytic core, N-terminal; Zinc finger, CHC2-type; Toprim domain; DNA primase, DnaB-helicase binding domain; DNA primase DnaG, DnaB-binding YP_004693563.1 KEGG: nit:NAL212_3077 hypothetical protein YP_004693564.1 TIGRFAM: Ribosomal protein S21; HAMAP: Ribosomal protein S21; KEGG: nit:NAL212_3078 30S ribosomal protein S21; PFAM: Ribosomal protein S21 YP_004693565.1 PFAM: Transposase IS3/IS911; KEGG: gca:Galf_0832 transposase IS3/IS911 family protein YP_004693566.1 PFAM: Integrase, catalytic core; KEGG: rso:RSp0548 ISRSO8-transposase orfB protein YP_004693567.1 KEGG: lch:Lcho_2324 hypothetical protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_004693568.1 PFAM: Integrase, catalytic core, phage; KEGG: nit:NAL212_2454 integrase YP_004693569.1 KEGG: nit:NAL212_2452 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004693570.1 KEGG: nit:NAL212_0371 hypothetical protein YP_004693571.1 PFAM: Integrase, catalytic core; KEGG: rso:RSp0548 ISRSO8-transposase orfB protein YP_004693572.1 PFAM: Transposase IS3/IS911; KEGG: gca:Galf_0832 transposase IS3/IS911 family protein YP_004693573.1 KEGG: nmu:Nmul_A1577 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02284; PFAM: Protein of unknown function DUF2383 YP_004693575.1 PFAM: Transposase IS3/IS911; KEGG: net:Neut_2500 transposase IS3/IS911 YP_004693576.1 PFAM: Plasmid stabilisation system; KEGG: nit:NAL212_3030 plasmid stabilization system YP_004693577.1 KEGG: nit:NAL212_3029 addiction module antidote protein, CC2985 family; TIGRFAM: addiction module antidote protein, CC2985; PFAM: addiction module antidote protein, CC2985 YP_004693578.1 KEGG: nmu:Nmul_A1247 hypothetical protein YP_004693581.1 KEGG: hil:HICON_17510 hypothetical protein YP_004693582.1 PFAM: Sel1-like; KEGG: gur:Gura_1985 Sel1 domain-containing protein YP_004693583.1 PFAM: Transposase IS3/IS911; KEGG: net:Neut_2500 transposase IS3/IS911 YP_004693584.1 KEGG: afe:Lferr_1426 integrase catalytic subunit; manually curated; PFAM: Integrase, catalytic core YP_004693585.1 KEGG: hiq:CGSHiGG_00130 Sel1 domain-containing protein; PFAM: Sel1-like; SMART: Sel1-like YP_004693586.1 PFAM: Protein of unknown function DUF466; KEGG: nit:NAL212_0284 hypothetical protein YP_004693587.1 PFAM: Carbon starvation protein CstA; KEGG: nit:NAL212_0285 carbon starvation protein CstA YP_004693589.1 KEGG: lipoprotein YP_004693590.1 KEGG: hch:HCH_00819 hypothetical protein YP_004693591.1 KEGG: prw:PsycPRwf_0663 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004693592.1 PFAM: Cache, type 2; ATP-binding region, ATPase-like; KEGG: rpi:Rpic_3728 integral membrane sensor signal transduction histidine kinase YP_004693593.1 KEGG: rxy:Rxyl_0160 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004693594.1 KEGG: gvi:gll2699 hypothetical protein YP_004693595.1 KEGG: sin:YN1551_1251 glyceraldehyde-3-phosphate dehydrogenase YP_004693596.1 PFAM: Transposase, IS116/IS110/IS902; Transposase, IS111A/IS1328/IS1533; KEGG: gca:Galf_0971 transposase IS116/IS110/IS902 family protein YP_004693597.1 PFAM: Transposase, IS4-like; KEGG: tgr:Tgr7_1308 ISRSO18-transposase YP_004693598.1 KEGG: nit:NAL212_2598 IstB domain-containing protein ATP-binding protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004693599.1 PFAM: Transposase IS3/IS911; KEGG: net:Neut_2194 transposase IS3/IS911 family protein YP_004693600.1 KEGG: dba:Dbac_1517 lipoprotein YP_004693603.1 PFAM: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver region; KEGG: cbe:Cbei_3785 two component LuxR family transcriptional regulator YP_004693604.1 PFAM: ATP-binding region, ATPase-like; Cache, type 2; KEGG: nwa:Nwat_1013 integral membrane sensor signal transduction histidine kinase YP_004693605.1 PFAM: Sodium:dicarboxylate symporter; KEGG: vpe:Varpa_1261 sodium:dicarboxylate symporter YP_004693606.1 PFAM: Phosphoadenosine phosphosulphate reductase; KEGG: ote:Oter_2431 phosphoadenylyl-sulfate reductase (thioredoxin) YP_004693607.1 PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin, C-terminal; KEGG: nmu:Nmul_A2387 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_004693608.1 PFAM: thiol-disulphide oxidoreductase DCC; KEGG: nit:NAL212_1192 thiol-disulfide oxidoreductase DCC YP_004693610.1 KEGG: dar:Daro_1641 hypothetical protein YP_004693611.1 PFAM: Prophage CP4-57 regulatory; KEGG: shm:Shewmr7_1765 phage transcriptional regulator, AlpA YP_004693612.1 KEGG: hypothetical protein YP_004693613.1 KEGG: phage-type endonuclease; TIGRFAM: phage-type endonuclease; PFAM: YqaJ viral recombinase YP_004693614.1 TIGRFAM: Conserved hypothetical protein CHP03299, phage/plasmid-related; KEGG: phage/plasmid-like protein YP_004693615.1 KEGG: alv:Alvin_3273 hypothetical protein YP_004693616.1 KEGG: dde:Dde_1748 DEAD/DEAH box helicase-like; PFAM: DNA/RNA helicase, C-terminal; SNF2-related; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004693617.1 KEGG: dde:Dde_1747 hypothetical protein YP_004693618.1 PFAM: DNA methylase N-4/N-6; KEGG: noc:Noc_2928 site-specific DNA-methyltransferase (adenine-specific) YP_004693619.1 PFAM: Protein of unknown function DUF262; Protein of unknown function DUF1524 RloF; KEGG: shn:Shewana3_1820 hypothetical protein YP_004693620.1 PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: noc:Noc_2927 type III restriction enzyme, res subunit YP_004693623.1 PFAM: Pirin, N-terminal; KEGG: din:Selin_0368 pirin domain-containing protein YP_004693624.1 PFAM: Transposase, IS4-like; KEGG: dar:Daro_2223 transposase IS4 YP_004693625.1 PFAM: Transposase, IS4-like; KEGG: nit:NAL212_2951 transposase IS4 family protein YP_004693626.1 KEGG: nit:NAL212_0061 hypothetical protein YP_004693627.1 PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: nit:NAL212_2526 peptidase S24/S26A/S26B, conserved region YP_004693628.1 TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T/DNA polymerase III; Excinuclease ABC, C subunit, N-terminal; KEGG: nit:NAL212_2527 DNA polymerase III, epsilon subunit; SMART: Exonuclease; Excinuclease ABC, C subunit, N-terminal YP_004693629.1 PFAM: DNA-repair protein, UmuC-like; KEGG: nit:NAL212_2528 DNA-directed DNA polymerase YP_004693630.1 KEGG: pat:Patl_3400 ribonuclease H YP_004693631.1 KEGG: gem:GM21_0307 protein of unknown function DUF1555; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_004693632.1 PFAM: Integrase, catalytic core, phage; KEGG: nmu:Nmul_A0922 phage integrase YP_004693633.1 KEGG: nit:NAL212_3020 RNA polymerase, sigma 32 subunit, RpoH; TIGRFAM: RNA polymerase sigma factor RpoH, proteobacteria; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 4 YP_004693634.1 PFAM: Protein of unknown function DUF214, permase predicted; KEGG: nit:NAL212_3019 hypothetical protein YP_004693635.1 TIGRFAM: Cell division ATP-binding protein FtsE; PFAM: ABC transporter-like; KEGG: nit:NAL212_3018 cell division ATP-binding protein FtsE; SMART: ATPase, AAA+ type, core YP_004693636.1 TIGRFAM: Cell division transporter substrate-binding protein FtsY; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; KEGG: nit:NAL212_3017 signal recognition particle-docking protein FtsY; SMART: ATPase, AAA+ type, core YP_004693637.1 PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; KEGG: nit:NAL212_3016 processing peptidase YP_004693638.1 KEGG: nit:NAL212_3015 calcium-binding EF-hand; PFAM: EF-Hand domain; SMART: Calcium-binding EF-hand YP_004693639.1 HAMAP: Oligoribonuclease; PFAM: Exonuclease, RNase T/DNA polymerase III; KEGG: nit:NAL212_3014 exonuclease RNase T and DNA polymerase III; SMART: Exonuclease YP_004693640.1 PFAM: Peptidase M48, Ste24p; KEGG: nit:NAL212_3013 STE24 endopeptidase YP_004693641.1 KEGG: nit:NAL212_3012 transcriptional coactivator/pterin dehydratase; HAMAP: pterin-4-alpha-carbinolamine dehydratase; PFAM: Transcriptional coactivator/pterin dehydratase YP_004693642.1 TIGRFAM: GTPase EngC; HAMAP: ribosome biogenesis GTPase RsgA; KEGG: nit:NAL212_3011 ribosome biogenesis GTPase RsgA; PFAM: GTPase EngC YP_004693643.1 KEGG: nit:NAL212_0416 dihydroneopterin aldolase; TIGRFAM: Dihydroneopterin aldolase; PFAM: Dihydroneopterin aldolase YP_004693644.1 TIGRFAM: Membrane protein YgiH; HAMAP: Protein of unknown function DUF205; KEGG: nit:NAL212_0417 hypothetical protein; PFAM: Protein of unknown function DUF205 YP_004693645.1 TIGRFAM: glycoprotease GCP; Peptidase M22, glycoprotease, subgroup; HAMAP: O-sialoglycoprotein endopeptidase; KEGG: nit:NAL212_0418 metalloendopeptidase, glycoprotease; PFAM: Peptidase M22, glycoprotease YP_004693646.1 KEGG: nit:NAL212_3155 hypothetical protein YP_004693647.1 KEGG: nit:NAL212_3154 hypothetical protein YP_004693648.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: nit:NAL212_3153 short-chain dehydrogenase/reductase SDR YP_004693649.1 KEGG: nit:NAL212_3152 hypothetical protein YP_004693650.1 KEGG: nit:NAL212_3151 hypothetical protein YP_004693651.1 TIGRFAM: Thiolase; KEGG: nit:NAL212_0503 acetyl-CoA acetyltransferase YP_004693652.1 PFAM: ATPase, F0 complex, subunit I, proteobacteria-type; KEGG: nit:NAL212_0504 ATP synthase I chain YP_004693653.1 TIGRFAM: ATPase, F0 complex, subunit A; HAMAP: ATP synthase subunit a; KEGG: nit:NAL212_0505 ATP synthase F0, A subunit; PFAM: ATPase, F0 complex, subunit A YP_004693654.1 TIGRFAM: ATPase, F0 complex, subunit C, bacterial/chloroplast; HAMAP: ATPase, F0 complex, subunit C; KEGG: nit:NAL212_0506 ATP synthase F0, C subunit; PFAM: ATPase, F0/V0 complex, subunit C YP_004693655.1 TIGRFAM: ATPase, F0 complex, subunit B, bacterial; HAMAP: ATP synthase subunit b; KEGG: nit:NAL212_0507 ATP synthase F0, B subunit; PFAM: ATPase, F0 complex, subunit B/B', bacterial/chloroplast YP_004693656.1 TIGRFAM: ATPase, F1 complex, OSCP/delta subunit; HAMAP: ATPase, F1 complex, OSCP/delta subunit; KEGG: nit:NAL212_0508 ATP synthase F1, delta subunit; PFAM: ATPase, F1 complex, OSCP/delta subunit YP_004693657.1 TIGRFAM: ATPase, F1 complex, alpha subunit; HAMAP: ATPase, F1 complex, alpha subunit; KEGG: nit:NAL212_0509 ATP synthase F1, alpha subunit; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal YP_004693658.1 TIGRFAM: ATPase, F1 complex, gamma subunit; HAMAP: ATP synthase gamma chain; KEGG: nit:NAL212_0510 ATP synthase F1, gamma subunit; PFAM: ATPase, F1 complex, gamma subunit YP_004693659.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ATPase, F1 complex, beta subunit; KEGG: nit:NAL212_0511 ATP synthase F1, beta subunit; HAMAP: ATPase, F1 complex, beta subunit; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal YP_004693660.1 TIGRFAM: ATPase, F1 complex, delta/epsilon subunit; HAMAP: ATPase, F1 complex, delta/epsilon subunit; KEGG: nit:NAL212_0512 ATP synthase F1, epsilon subunit; PFAM: ATPase, F1 complex, delta/epsilon subunit, N-terminal; ATPase, F1 complex, delta/epsilon subunit, C-terminal YP_004693661.1 TIGRFAM: Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase; HAMAP: Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase; KEGG: nit:NAL212_0513 bifunctional protein GlmU; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; Bacterial transferase hexapeptide repeat YP_004693662.1 TIGRFAM: Glucosamine-fructose-6-phosphate aminotransferase, isomerising; HAMAP: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; KEGG: nit:NAL212_0514 glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: Sugar isomerase (SIS); Glutamine amidotransferase, class-II YP_004693663.1 TIGRFAM: Protein of unknown function DUF28; HAMAP: Protein of unknown function DUF28; KEGG: nit:NAL212_0515 hypothetical protein; PFAM: Protein of unknown function DUF28 YP_004693664.1 TIGRFAM: Crossover junction endodeoxyribonuclease RuvC; HAMAP: Crossover junction endodeoxyribonuclease RuvC; KEGG: nit:NAL212_0516 crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC YP_004693665.1 TIGRFAM: Bacterial DNA recombination protein RuvA; HAMAP: Holliday junction ATP-dependent DNA helicase ruvA; KEGG: nit:NAL212_0517 Holliday junction ATP-dependent DNA helicase RuvA; PFAM: DNA helicase, Holliday junction RuvA type, domain I, bacterial; DNA helicase, Holliday junction RuvA type, domain III, C-terminal YP_004693666.1 SMART: ATPase, AAA+ type, core; TIGRFAM: DNA helicase, Holliday junction RuvB type; KEGG: nit:NAL212_0518 Holliday junction DNA helicase RuvB; HAMAP: DNA helicase, Holliday junction RuvB type; PFAM: DNA helicase, Holliday junction RuvB type, C-terminal; ATPase, AAA-type, core; DNA helicase, Holliday junction RuvB type, N-terminal YP_004693667.1 KEGG: nit:NAL212_0519 hypothetical protein YP_004693668.1 PFAM: Uncharacterised protein family UPF0005; KEGG: nit:NAL212_0520 hypothetical protein YP_004693669.1 KEGG: nit:NAL212_0521 hypothetical protein YP_004693670.1 KEGG: nit:NAL212_0523 cytochrome c oxidase, subunit II; TIGRFAM: Cytochrome c oxidase, subunit II; PFAM: Cytochrome c oxidase subunit II C-terminal; Cytochrome C oxidase subunit II, transmembrane region YP_004693671.1 KEGG: nit:NAL212_0524 cytochrome c oxidase, subunit I; TIGRFAM: Cytochrome c oxidase, subunit I bacterial type; PFAM: Cytochrome c oxidase, subunit I YP_004693673.1 PFAM: Cytochrome c oxidase assembly protein CtaG/Cox11; KEGG: nit:NAL212_0526 cytochrome c oxidase assembly protein CtaG/Cox11 YP_004693674.1 KEGG: nit:NAL212_0527 transmembrane protein YP_004693675.1 PFAM: Cytochrome c oxidase, subunit III; KEGG: nit:NAL212_0528 cytochrome-c oxidase YP_004693676.1 KEGG: nit:NAL212_0529 surfeit locus 1 family protein YP_004693677.1 KEGG: nit:NAL212_0530 transmembrane protein YP_004693678.1 TIGRFAM: Protohaem IX farnesyltransferase; HAMAP: Protohaem IX farnesyltransferase; KEGG: nit:NAL212_0531 protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase YP_004693679.1 PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal; KEGG: nit:NAL212_0532 D-lactate dehydrogenase (cytochrome) YP_004693680.1 PFAM: Transport-associated; KEGG: nit:NAL212_0533 transport-associated protein YP_004693681.1 KEGG: nit:NAL212_0534 CheW protein; PFAM: CheW-like protein; SMART: CheW-like protein YP_004693682.1 KEGG: nit:NAL212_0535 acetylglutamate kinase; TIGRFAM: Acetylglutamate kinase; PFAM: Aspartate/glutamate/uridylate kinase YP_004693683.1 KEGG: nit:NAL212_0536 RNA methyltransferase, TrmH family, group 1; TIGRFAM: RNA methyltransferase TrmH, group 1; PFAM: tRNA/rRNA methyltransferase, SpoU YP_004693684.1 PFAM: Plasmid pRiA4b ORF-3-like; KEGG: nit:NAL212_0727 plasmid pRiA4b ORF-3 family protein YP_004693685.1 PFAM: Transposase, IS4-like; KEGG: dar:Daro_2223 transposase IS4 YP_004693686.1 KEGG: dia:Dtpsy_2525 isxo7 transposase YP_004693687.1 KEGG: bgl:bglu_2g22620 response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004693688.1 KEGG: nit:NAL212_2701 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein YP_004693690.1 TIGRFAM: Arginine biosynthesis protein ArgJ; HAMAP: Arginine biosynthesis protein ArgJ; KEGG: nit:NAL212_2703 arginine biosynthesis bifunctional protein ArgJ; PFAM: Arginine biosynthesis protein ArgJ YP_004693691.1 KEGG: nit:NAL212_2704 hypothetical protein; PFAM: Protein of unknown function DUF815; SMART: ATPase, AAA+ type, core YP_004693692.1 PFAM: Thiamine monophosphate synthase; NUDIX hydrolase domain; KEGG: nit:NAL212_2705 thiamine monophosphate synthase YP_004693693.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: nit:NAL212_2706 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004693694.1 KEGG: nit:NAL212_2707 uncharacterized zinc-binding family protein; HAMAP: Uncharacterised protein family, zinc-binding; PFAM: Uncharacterised protein family, zinc-binding YP_004693695.1 KEGG: nit:NAL212_2708 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2 YP_004693696.1 KEGG: nit:NAL212_2709 hypothetical protein YP_004693697.1 KEGG: nit:NAL212_2711 xenobiotic-transporting ATPase; PFAM: ABC transporter-like; ABC transporter, transmembrane region; SMART: ATPase, AAA+ type, core YP_004693698.1 PFAM: Domain of unknown function DUF1854; KEGG: nit:NAL212_2712 hypothetical protein YP_004693699.1 KEGG: nit:NAL212_2716 tRNA modification GTPase TrmE; PFAM: GTP-binding protein TrmE, N-terminal; GTP-binding protein, HSR1-related; manually curated; TIGRFAM: tRNA modification GTPase TrmE; Small GTP-binding protein; SMART: Ras small GTPase, Ras type; HAMAP: tRNA modification GTPase TrmE YP_004693700.1 TIGRFAM: Membrane insertion protein, OxoA/YidC, N-terminal; Membrane insertion protein, OxaA/YidC, core; HAMAP: Membrane protein oxaA; KEGG: nit:NAL212_2717 membrane protein insertase, YidC/Oxa1 family domain containing; PFAM: Membrane insertion protein, OxaA/YidC YP_004693701.1 PFAM: Protein of unknown function DUF37; manually curated; TIGRFAM: Protein of unknown function DUF37; KEGG: nmu:Nmul_A2777 hypothetical protein; HAMAP: Protein of unknown function DUF37 YP_004693702.1 PFAM: Ribonuclease P; manually curated; TIGRFAM: Ribonuclease P; KEGG: nit:NAL212_2718 ribonuclease P protein component; HAMAP: Ribonuclease P YP_004693703.1 TIGRFAM: Ribosomal protein L34; HAMAP: 50S ribosomal protein L34; KEGG: nit:NAL212_2719 50S ribosomal protein L34; PFAM: Ribosomal protein L34 YP_004693704.1 KEGG: nit:NAL212_2099 hypothetical protein YP_004693706.1 KEGG: nit:NAL212_2100 type I secretion outer membrane protein, TolC family; TIGRFAM: Type I secretion outer membrane protein, TolC; PFAM: Outer membrane efflux protein YP_004693707.1 KEGG: nit:NAL212_2101 type I secretion membrane fusion protein, HlyD family; TIGRFAM: Type I secretion membrane fusion protein, HlyD; PFAM: Secretion protein HlyD YP_004693708.1 TIGRFAM: ATPase, type I secretion system, PrtD; PFAM: ABC transporter-like; ABC transporter, transmembrane region; KEGG: nit:NAL212_2102 type I secretion system ATPase; SMART: ATPase, AAA+ type, core YP_004693709.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: nit:NAL212_2103 NAD-dependent epimerase/dehydratase YP_004693710.1 PFAM: Glycosyl transferase, family 2; KEGG: nit:NAL212_2104 glycosyl transferase 2 YP_004693711.1 KEGG: nwa:Nwat_0909 rhamnosyltransferase; TIGRFAM: Rhamnosyltransferase; PFAM: Glycosyl transferase, family 2 YP_004693713.1 PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; Glycosyl transferase, family 2; KEGG: avn:Avin_15980 glycosyl transferase, family 2 YP_004693714.1 PFAM: Haloacid dehalogenase-like hydrolase; KEGG: avn:Avin_15990 hydrolase (HAD superfamily) protein YP_004693715.1 PFAM: Methyltransferase type 11; KEGG: nit:NAL212_3005 hypothetical protein YP_004693716.1 KEGG: nit:NAL212_3004 teichoic-acid-transporting ATPase; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004693717.1 KEGG: pol:Bpro_4002 hypothetical protein; manually curated; PFAM: ABC-2 type transporter YP_004693718.1 PFAM: Haemolysin-type calcium-binding region; KEGG: nit:NAL212_3002 hypothetical protein YP_004693719.1 PFAM: Methyltransferase regulatory domain, predicted; KEGG: rce:RC1_0828 hypothetical protein YP_004693720.1 KEGG: nit:NAL212_3001 orotidine 5'-phosphate decarboxylase; TIGRFAM: Orotidine 5'-phosphate decarboxylase, subfamily 1, core; PFAM: Orotidine 5'-phosphate decarboxylase, core YP_004693721.1 KEGG: nit:NAL212_3000 hypothetical protein YP_004693722.1 SMART: Histone-like bacterial DNA-binding protein; TIGRFAM: Integration host factor, beta subunit; KEGG: nit:NAL212_2999 integration host factor, beta subunit; HAMAP: Integration host factor, beta subunit; PFAM: Histone-like bacterial DNA-binding protein YP_004693723.1 KEGG: nit:NAL212_2998 30S ribosomal protein S1; TIGRFAM: Ribosomal S1 synthesis/modification protein; PFAM: Ribosomal protein S1, RNA binding domain YP_004693724.1 TIGRFAM: Cytidylate kinase; HAMAP: Cytidylate kinase; KEGG: nit:NAL212_2997 cytidylate kinase; PFAM: Cytidylate kinase region YP_004693725.1 TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, subgroup; HAMAP: 3-phosphoshikimate 1-carboxyvinyltransferase, subgroup; KEGG: nit:NAL212_2996 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, core YP_004693726.1 KEGG: nit:NAL212_2995 hypothetical protein YP_004693727.1 TIGRFAM: DNA topoisomerase III, bacterial-type; PFAM: DNA topoisomerase, type IA, central; Toprim domain; KEGG: nit:NAL212_2994 DNA topoisomerase III; SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain, subgroup YP_004693728.1 KEGG: nit:NAL212_2993 hypothetical protein; HAMAP: Protein smg; PFAM: Protein of unknown function DUF494 YP_004693729.1 KEGG: nit:NAL212_2992 DNA protecting protein DprA; TIGRFAM: DNA recombination-mediator protein A; PFAM: DNA recombination-mediator protein A YP_004693730.1 KEGG: nit:NAL212_2991 peptidoglycan-binding lysin domain; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup YP_004693731.1 TIGRFAM: Formylmethionine deformylase; HAMAP: Formylmethionine deformylase; KEGG: nit:NAL212_2990 peptide deformylase; PFAM: Formylmethionine deformylase YP_004693732.1 TIGRFAM: Methionyl-tRNA formyltransferase; HAMAP: Methionyl-tRNA formyltransferase; KEGG: nit:NAL212_2989 methionyl-tRNA formyltransferase; PFAM: Formyl transferase, N-terminal; Formyl transferase, C-terminal YP_004693733.1 KEGG: nit:NAL212_2988 sun protein; TIGRFAM: Fmu, rRNA SAM-dependent methyltransferase; PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; NusB/RsmB/TIM44 YP_004693734.1 KEGG: nit:NAL212_2987 hypothetical protein YP_004693735.1 KEGG: nit:NAL212_2986 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004693736.1 KEGG: nit:NAL212_2985 two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: Signal transduction response regulator, receiver region; RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region YP_004693737.1 KEGG: nit:NAL212_0188 transketolase; TIGRFAM: Transketolase, bacterial-like; PFAM: Transketolase, N-terminal; Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal YP_004693738.1 KEGG: nit:NAL212_0187 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain YP_004693739.1 KEGG: nit:NAL212_0186 phosphoglycerate kinase; HAMAP: Phosphoglycerate kinase; PFAM: Phosphoglycerate kinase YP_004693740.1 KEGG: nit:NAL212_0185 pyruvate kinase; TIGRFAM: Pyruvate kinase; PFAM: Pyruvate kinase, barrel; Pyruvate kinase, alpha/beta YP_004693741.1 KEGG: nit:NAL212_0184 fructose-bisphosphate aldolase, class II, Calvin cycle subtype; TIGRFAM: Fructose-bisphosphate aldolase, class II, Calvin cycle subtype; Ketose-bisphosphate aldolase, class-II; PFAM: Ketose-bisphosphate aldolase, class-II YP_004693742.1 KEGG: afe:Lferr_0145 transposase YP_004693743.1 KEGG: afe:Lferr_0146 hypothetical protein YP_004693744.1 KEGG: nit:NAL212_2620 Fe(II) trafficking protein YggX; HAMAP: Fe(II) trafficking protein YggX; PFAM: Fe(II) trafficking protein YggX YP_004693745.1 KEGG: nit:NAL212_2619 amino-acid N-acetyltransferase; TIGRFAM: Amino-acid N-acetyltransferase (ArgA); PFAM: GCN5-related N-acetyltransferase; Aspartate/glutamate/uridylate kinase YP_004693746.1 KEGG: nit:NAL212_2618 ribosomal RNA small subunit methyltransferase E; TIGRFAM: Ribosomal RNA small subunit methyltransferase E; PFAM: Ribosomal RNA small subunit methyltransferase E YP_004693747.1 PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: nit:NAL212_2617 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_004693748.1 PFAM: Inositol monophosphatase; KEGG: nit:NAL212_2616 inositol monophosphatase YP_004693749.1 PFAM: Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal; KEGG: nit:NAL212_2615 TrkA-N domain-containing protein YP_004693750.1 PFAM: Cation transporter; KEGG: nit:NAL212_2614 cation transporter YP_004693751.1 KEGG: nit:NAL212_2613 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004693752.1 KEGG: nit:NAL212_2606 methane monooxygenase/ammonia monooxygenase, subunit C; TIGRFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit C; PFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit C YP_004693753.1 KEGG: nit:NAL212_2605 methane monooxygenase/ammonia monooxygenase, subunit A; TIGRFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit A; PFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit A YP_004693754.1 KEGG: nit:NAL212_2604 methane monooxygenase/ammonia monooxygenase, subunit B; TIGRFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit B; PFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit B YP_004693755.1 KEGG: nit:NAL212_2603 hypothetical protein YP_004693756.1 KEGG: nit:NAL212_2602 hypothetical protein YP_004693757.1 PFAM: SNARE associated Golgi protein; KEGG: abu:Abu_2024 hypothetical protein YP_004693758.1 KEGG: nit:NAL212_1061 protein-export membrane protein SecF; TIGRFAM: SecF protein; SecD/SecF/SecDF export membrane protein; PFAM: SecD/SecF/SecDF export membrane protein YP_004693759.1 KEGG: nit:NAL212_1060 protein-export membrane protein SecD; TIGRFAM: SecD export membrane protein; SecD/SecF/SecDF export membrane protein; PFAM: SecD/SecF/SecDF export membrane protein YP_004693760.1 KEGG: nit:NAL212_1059 preprotein translocase, YajC subunit; TIGRFAM: YajC; PFAM: YajC YP_004693761.1 TIGRFAM: Queuine tRNA-ribosyltransferase; Queuine/other tRNA-ribosyltransferase; HAMAP: Queuine tRNA-ribosyltransferase; KEGG: nit:NAL212_1058 queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase YP_004693762.1 TIGRFAM: Queuosine biosynthesis protein; HAMAP: S-adenosylmethionine:tRNA ribosyltransferase-isomerase; KEGG: nit:NAL212_1057 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein YP_004693763.1 manually curated; KEGG: rso:RSc2475 hypothetical protein YP_004693764.1 PFAM: Transposase, IS4-like; KEGG: afe:Lferr_1749 hypothetical protein YP_004693765.1 KEGG: cyt:cce_4803 hypothetical protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_004693767.1 KEGG: nit:NAL212_1596 hypothetical protein YP_004693769.1 KEGG: nit:NAL212_0490 ABC transporter-like protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004693770.1 TIGRFAM: Flagellar hook-basal body complex protein FliE; HAMAP: Flagellar hook-basal body complex protein FliE; KEGG: nit:NAL212_0489 flagellar hook-basal body complex subunit FliE; PFAM: Flagellar hook-basal body complex protein FliE YP_004693771.1 KEGG: nit:NAL212_0488 two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core YP_004693772.1 KEGG: nit:NAL212_0487 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS YP_004693773.1 KEGG: nit:NAL212_0486 flagellar M-ring protein FliF; TIGRFAM: Flagellar FliF M-ring protein; PFAM: Flagellar M-ring C-terminal; Secretory protein YscJ/FliF YP_004693774.1 KEGG: nit:NAL212_0485 flagellar motor switch protein FliG; TIGRFAM: Flagellar motor switch protein FliG; PFAM: Flagellar motor switch protein FliG YP_004693775.1 PFAM: Flagellar assembly protein FliH/Type III secretion system HrpE; KEGG: nit:NAL212_0484 flagellar assembly protein FliH/type III secretion system HrpE YP_004693776.1 TIGRFAM: Flagellar protein export ATPase, FliI; ATPase, type III secretion system, FliI/YscN; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; KEGG: nit:NAL212_0483 flagellar protein export ATPase FliI; SMART: ATPase, AAA+ type, core YP_004693777.1 TIGRFAM: Flagellar export FliJ; KEGG: nit:NAL212_0482 flagellar export protein FliJ YP_004693778.1 PFAM: Flagellar hook-length control protein; KEGG: nit:NAL212_0481 flagellar hook-length control protein-like protein YP_004693779.1 PFAM: Flagellar basal body-associated protein FliL; KEGG: nit:NAL212_0480 flagellar basal body-associated protein FliL YP_004693780.1 KEGG: nit:NAL212_0479 flagellar motor switch protein FliM; TIGRFAM: Flagellar motor switch protein FliM; PFAM: Flagellar motor switch protein FliM; Surface presentation of antigen (SpoA) YP_004693781.1 KEGG: nit:NAL212_0478 flagellar motor switch protein FliN; TIGRFAM: Flagellar motor switch FliN; PFAM: Surface presentation of antigen (SpoA) YP_004693782.1 KEGG: nit:NAL212_0477 flagellar biosynthetic protein FliO; TIGRFAM: Flagellar biosynthesis protein, FliO; PFAM: Flagellar biosynthesis protein, FliO YP_004693783.1 KEGG: nit:NAL212_0476 flagellar biosynthetic protein FliP; TIGRFAM: Flagellar transport protein FliP; PFAM: Type III secretion system inner membrane P protein YP_004693784.1 KEGG: nit:NAL212_0475 flagellar biosynthetic protein FliQ; TIGRFAM: Flagellar biosynthesis protein FliQ; PFAM: Bacterial export protein FliQ, family 3 YP_004693785.1 KEGG: nit:NAL212_0474 flagellar biosynthetic protein FliR; TIGRFAM: Flagellar biosynthesis protein FliR; PFAM: Type III secretion system inner membrane R protein YP_004693786.1 KEGG: nit:NAL212_0473 hypothetical protein YP_004693787.1 TIGRFAM: tRNA 2-selenouridine synthase; HAMAP: tRNA 2-selenouridine synthase; KEGG: shw:Sputw3181_3681 tRNA 2-selenouridine synthase; SMART: Rhodanese-like YP_004693788.1 PFAM: AMP-dependent synthetase/ligase; KEGG: nit:NAL212_0307 long-chain-fatty-acid--(acyl-carrier-protein) ligase YP_004693789.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: nit:NAL212_0308 NAD-dependent epimerase/dehydratase YP_004693790.1 PFAM: Phosphopantetheine-binding; KEGG: nit:NAL212_0309 phosphopantetheine-binding protein YP_004693791.1 PFAM: Aminotransferase, class I/II; KEGG: nit:NAL212_0310 8-amino-7-oxononanoate synthase YP_004693792.1 KEGG: nit:NAL212_0311 hypothetical protein YP_004693793.1 KEGG: app:CAP2UW1_1594 pyridine nucleotide-disulfide oxidoreductase; TIGRFAM: Pyridine nucleotide-disulphide oxidoreductase, N-terminal; Selenide water dikinase; PFAM: AIR synthase related protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; AIR synthase related protein, C-terminal YP_004693794.1 PFAM: Peptidoglycan binding-like; KEGG: nit:NAL212_0701 peptidoglycan-binding domain 1 protein YP_004693795.1 KEGG: nit:NAL212_0702 hopanoid biosynthesis associated radical SAM protein HpnH; TIGRFAM: Hopanoid biosynthesis associated radical SAM protein HpnH; PFAM: Radical SAM YP_004693796.1 PFAM: Glycosyl transferase, family 2; KEGG: nit:NAL212_0703 glycosyl transferase 2 YP_004693797.1 KEGG: nit:NAL212_0704 hopanoid biosynthesis associated membrane protein HpnM; TIGRFAM: Hopanoid biosynthesis-associated membrane protein HpnM; PFAM: Toluene tolerance YP_004693798.1 TIGRFAM: Hopanoid biosynthesis associated RND transporter like protein HpnN; KEGG: nit:NAL212_0705 hopanoid biosynthesis associated RND transporter like protein HpnN YP_004693799.1 PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; KEGG: nit:NAL212_0706 Fmu (Sun) domain-containing protein YP_004693800.1 KEGG: nit:NAL212_0707 hypothetical protein YP_004693801.1 KEGG: nit:NAL212_0708 phosphoribosylglycinamide formyltransferase; TIGRFAM: Phosphoribosylglycinamide formyltransferase; PFAM: Formyl transferase, N-terminal YP_004693802.1 KEGG: nit:NAL212_0709 phosphoribosylformylglycinamidine cyclo-ligase; TIGRFAM: Phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein, C-terminal; AIR synthase related protein YP_004693805.1 PFAM: Aminotransferase class-III; KEGG: nit:NAL212_0712 acetylornithine transaminase YP_004693806.1 PFAM: Uncharacterised protein family UPF0118; KEGG: nit:NAL212_0713 hypothetical protein YP_004693807.1 KEGG: nit:NAL212_0714 DnaA regulatory inactivator Hda; TIGRFAM: Chromosomal replication control, regulator Hda; PFAM: Chromosomal replication control, initiator (DnaA)/regulator (Hda) YP_004693808.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IB, PSPase-like, bacterial; HAD-superfamily hydrolase, subfamily IB, PSPase-like; KEGG: nit:NAL212_0715 HAD-superfamily subfamily IB hydrolase, TIGR01490 YP_004693810.1 TIGRFAM: Lysyl-tRNA synthetase, class II; HAMAP: Lysyl-tRNA synthetase; KEGG: nit:NAL212_0716 lysyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type YP_004693811.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; GAF; HAMP linker domain; KEGG: nit:NAL212_0721 diguanylate cyclase with GAF sensor; SMART: Diguanylate cyclase, predicted YP_004693812.1 PFAM: Phosphotransferase system, fructose subfamily IIA component; KEGG: nit:NAL212_0722 PTS system fructose subfamily IIA component YP_004693813.1 KEGG: nit:NAL212_0723 phosphotransferase system, phosphocarrier protein HPr; TIGRFAM: Phosphotransferase system, phosphocarrier HPr protein; PFAM: Phosphotransferase system, phosphocarrier HPr protein YP_004693814.1 KEGG: nit:NAL212_0724 phosphoenolpyruvate-protein phosphotransferase; TIGRFAM: Phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilising enzyme; Phosphotransferase system, PEP-utilising enzyme, N-terminal; PEP-utilising enzyme, mobile region YP_004693815.1 TIGRFAM: Homoserine O-acetyltransferase; HAMAP: Homoserine O-acetyltransferase; KEGG: nit:NAL212_0725 homoserine O-acetyltransferase; PFAM: Alpha/beta hydrolase fold-1 YP_004693816.1 KEGG: nit:NAL212_0726 methionine biosynthesis protein MetW; TIGRFAM: Methionine biosynthesis MetW; PFAM: Methionine biosynthesis MetW YP_004693817.1 PFAM: Protein of unknown function DUF455; KEGG: nit:NAL212_0728 hypothetical protein YP_004693818.1 PFAM: Thioesterase superfamily; KEGG: nit:NAL212_0729 thioesterase superfamily protein YP_004693819.1 KEGG: gur:Gura_0563 hypothetical protein YP_004693820.1 KEGG: gur:Gura_0562 hypothetical protein YP_004693821.1 PFAM: Sulfotransferase; KEGG: nit:NAL212_0730 sulfotransferase YP_004693822.1 PFAM: Addiction module component, CHP02574 YP_004693825.1 TIGRFAM: 6-phosphogluconolactonase; KEGG: nit:NAL212_0733 6-phosphogluconolactonase YP_004693826.1 PFAM: Haloacid dehalogenase-like hydrolase; KEGG: nit:NAL212_0734 haloacid dehalogenase domain-containing protein hydrolase YP_004693827.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: nit:NAL212_0735 NAD-dependent epimerase/dehydratase YP_004693828.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; KEGG: nit:NAL212_0736 phosphoglycerate dehydrogenase YP_004693829.1 PFAM: HpcH/HpaI aldolase; KEGG: nit:NAL212_0737 4-hydroxy-2-oxovalerate aldolase YP_004693830.1 PFAM: Acylneuraminate cytidylyltransferase; KEGG: nit:NAL212_0738 3-deoxy-manno-octulosonate cytidylyltransferase YP_004693831.1 KEGG: nit:NAL212_0739 hypothetical protein YP_004693832.1 TIGRFAM: Methyltransferase FkbM; KEGG: nit:NAL212_0740 methyltransferase FkbM family YP_004693833.1 PFAM: Glycosyl transferase, family 2; KEGG: nit:NAL212_0741 glycosyl transferase 2 YP_004693834.1 PFAM: O-antigen ligase-related; KEGG: nit:NAL212_0742 O-antigen polymerase YP_004693835.1 PFAM: Methyltransferase type 11; KEGG: nit:NAL212_0744 methyltransferase type 11 YP_004693836.1 PFAM: O-methyltransferase, family 3; KEGG: nit:NAL212_0745 O-methyltransferase 3 YP_004693837.1 PFAM: Domain of unknown function DUF2024; KEGG: nit:NAL212_0746 hypothetical protein YP_004693838.1 KEGG: nit:NAL212_0747 hypothetical protein YP_004693839.1 PFAM: Arsenate reductase-like; KEGG: nit:NAL212_0748 arsenate reductase like protein YP_004693840.1 TIGRFAM: Ribosomal protein L19; HAMAP: Ribosomal protein L19; KEGG: nit:NAL212_0749 50S ribosomal protein L19; PFAM: Ribosomal protein L19 YP_004693841.1 TIGRFAM: tRNA (guanine-N1-)-methyltransferase, bacteria; HAMAP: tRNA (guanine-N1-)-methyltransferase, bacteria; KEGG: nit:NAL212_0750 tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase YP_004693842.1 TIGRFAM: 16S rRNA processing protein RimM; HAMAP: 16S rRNA processing protein RimM; KEGG: nit:NAL212_0751 ribosome maturation factor RimM; PFAM: RimM protein; PRC-barrel YP_004693843.1 TIGRFAM: Ribosomal protein S16; HAMAP: Ribosomal protein S16; KEGG: nit:NAL212_0752 30S ribosomal protein S16; PFAM: Ribosomal protein S16 YP_004693844.1 PFAM: Cysteine-rich region, CCG; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: nit:NAL212_0753 hypothetical protein YP_004693845.1 HAMAP: 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; KEGG: nit:NAL212_0754 ubiquinone biosynthesis family protein YP_004693846.1 KEGG: nit:NAL212_0755 hypothetical protein; HAMAP: Protein of unknown function DUF179; PFAM: Protein of unknown function DUF179 YP_004693847.1 SMART: Resolvase, RNase H-like fold; TIGRFAM: Resolvase, holliday junction-type, YqgF-like; KEGG: nit:NAL212_0756 Holliday junction resolvase YqgF; HAMAP: Holliday junction resolvase; PFAM: Resolvase, holliday junction-type, YqgF-like YP_004693848.1 PFAM: Phosphoribosyltransferase; KEGG: nit:NAL212_0757 uracil phosphoribosyltransferase YP_004693849.1 TIGRFAM: Aspartate carbamoyltransferase, eukaryotic; HAMAP: Aspartate carbamoyltransferase; KEGG: nit:NAL212_0758 aspartate carbamoyltransferase; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region YP_004693850.1 KEGG: nit:NAL212_0759 dihydroorotase, multifunctional complex type; TIGRFAM: Dihydroorotase multifunctional complex type; PFAM: Amidohydrolase 3 YP_004693851.1 PFAM: Peptidase M3A/M3B, thimet/oligopeptidase F; KEGG: nit:NAL212_0760 oligopeptidase A YP_004693852.1 PFAM: VacJ-like lipoprotein; KEGG: nit:NAL212_0761 VacJ family lipoprotein YP_004693853.1 KEGG: pag:PLES_57451 rubredoxin 2; manually curated; PFAM: Rubredoxin-type Fe(Cys)4 protein YP_004693854.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: nit:NAL212_0762 rubredoxin--NAD(+) reductase YP_004693855.1 TIGRFAM: Intracellular septation protein A; HAMAP: Intracellular septation protein A; KEGG: nit:NAL212_0763 intracellular septation protein A; PFAM: Intracellular septation protein A YP_004693856.1 PFAM: YCII-related; KEGG: nmu:Nmul_A2112 YCII-related YP_004693857.1 PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; KEGG: nit:NAL212_0765 PpiC-type peptidyl-prolyl cis-trans isomerase YP_004693858.1 TIGRFAM: Alanine racemase; HAMAP: Alanine racemase; KEGG: nit:NAL212_0766 alanine racemase; PFAM: Alanine racemase, N-terminal; Alanine racemase, C-terminal YP_004693859.1 PFAM: Major facilitator superfamily MFS-1; KEGG: nit:NAL212_0767 major facilitator superfamily MFS_1 YP_004693860.1 KEGG: npu:Npun_F6044 SNF2-related protein; PFAM: SNF2-related; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004693861.1 KEGG: neu:NE0262 hypothetical protein; TIGRFAM: addiction module antidote protein, CC2985; PFAM: addiction module antidote protein, CC2985 YP_004693862.1 PFAM: EF-Hand domain; KEGG: gca:Galf_2016 EF-Hand, calmodulin YP_004693863.1 KEGG: gca:Galf_2015 hypothetical protein YP_004693864.1 KEGG: gca:Galf_2014 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004693865.1 KEGG: gca:Galf_2013 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004693866.1 KEGG: nit:NAL212_0768 phage SPO1 DNA polymerase-like protein; TIGRFAM: Phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase-like YP_004693867.1 KEGG: nit:NAL212_0769 ribosomal-protein-alanine acetyltransferase; TIGRFAM: Ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase YP_004693868.1 KEGG: nit:NAL212_0770 universal protein YeaZ; TIGRFAM: universal protein YeaZ; PFAM: Peptidase M22, glycoprotease YP_004693869.1 KEGG: nit:NAL212_0771 2'-5' RNA ligase; TIGRFAM: 2',5' RNA ligase; PFAM: Phosphoesterase, HXTX YP_004693870.1 TIGRFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; HAMAP: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; KEGG: nit:NAL212_0772 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core YP_004693871.1 TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; HAMAP: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; KEGG: nit:NAL212_0773 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase YP_004693872.1 manually curated YP_004693873.1 PFAM: Peptidase S49; KEGG: nit:NAL212_0775 peptidase S49 YP_004693874.1 KEGG: nit:NAL212_0783 dTDP-4-dehydrorhamnose reductase; TIGRFAM: dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase YP_004693875.1 KEGG: nit:NAL212_0784 dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_004693876.1 TIGRFAM: Lysidine-tRNA(Ile) synthetase, N-terminal; Lysidine-tRNA(Ile) synthetase, C-terminal; HAMAP: tRNA(Ile)-lysidine synthase; KEGG: nit:NAL212_0785 tRNA(Ile)-lysidine synthetase; PFAM: PP-loop; Lysidine-tRNA(Ile) synthetase, substrate-binding domain YP_004693877.1 TIGRFAM: Acetyl-CoA carboxylase, alpha subunit; HAMAP: Acetyl-CoA carboxylase, alpha subunit; KEGG: nit:NAL212_0786 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: Acetyl-CoA carboxylase, alpha subunit, conserved region YP_004693878.1 KEGG: nit:NAL212_0787 methionine-R-sulfoxide reductase; TIGRFAM: Methionine sulphoxide reductase B; PFAM: Methionine sulphoxide reductase B YP_004693879.1 TIGRFAM: Peptide methionine sulphoxide reductase MsrA; HAMAP: Peptide methionine sulphoxide reductase MsrA; KEGG: nit:NAL212_0788 peptide methionine sulfoxide reductase; PFAM: Peptide methionine sulphoxide reductase MsrA YP_004693880.1 KEGG: nit:NAL212_0789 cupin, JmjC-type; PFAM: Cupin 4; SMART: Transcription factor jumonji/aspartyl beta-hydroxylase YP_004693881.1 KEGG: nit:NAL212_0406 hypothetical protein YP_004693882.1 KEGG: nit:NAL212_2773 hypothetical protein YP_004693883.1 KEGG: nit:NAL212_2774 hypothetical protein YP_004693884.1 PFAM: NlpBDapX lipoprotein; KEGG: nit:NAL212_2098 transmembrane protein YP_004693885.1 TIGRFAM: Dihydrodipicolinate synthase subfamily; HAMAP: Dihydrodipicolinate synthase; KEGG: nit:NAL212_2097 dihydrodipicolinate synthase; PFAM: Dihydrodipicolinate synthetase YP_004693886.1 PFAM: Transposase, IS4-like; KEGG: tgr:Tgr7_1308 ISRSO18-transposase YP_004693887.1 TIGRFAM: Chaperonin ClpB; PFAM: ATPase associated with various cellular activities, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; KEGG: nit:NAL212_2096 ATP-dependent chaperone ClpB; SMART: ATPase, AAA+ type, core YP_004693888.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS fold-3; KEGG: nit:NAL212_2095 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAC motif; PAS YP_004693889.1 PFAM: Glutamate synthase, central-C; KEGG: nit:NAL212_2094 glutamate synthase (NADPH) YP_004693890.1 KEGG: nit:NAL212_2084 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: Nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase YP_004693891.1 PFAM: Tetrapyrrole methylase; Sirohaem synthase, dimerisation domain; TIGRFAM: Uroporphyrin-III C-methyltransferase, C-terminal; Sirohaem synthase, N-terminal; HAMAP: Siroheme synthase; KEGG: nit:NAL212_2083 uroporphyrin-III C-methyltransferase YP_004693892.1 TIGRFAM: Phosphate binding protein; KEGG: nit:NAL212_2082 phosphate binding protein YP_004693893.1 KEGG: nit:NAL212_2080 phosphoglucosamine mutase; TIGRFAM: Phosphoglucosamine mutase; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal YP_004693894.1 KEGG: nit:NAL212_2079 dihydropteroate synthase; TIGRFAM: Dihydropteroate synthase; PFAM: Dihydropteroate synthase, DHPS YP_004693895.1 TIGRFAM: Peptidase M41, FtsH; PFAM: Peptidase M41; ATPase, AAA-type, core; Peptidase M41, FtsH extracellular; KEGG: nit:NAL212_2078 ATP-dependent metalloprotease FtsH; SMART: ATPase, AAA+ type, core YP_004693896.1 KEGG: nit:NAL212_2077 ribosomal RNA methyltransferase RrmJ/FtsJ; HAMAP: Ribosomal RNA large subunit methyltransferase E; PFAM: Ribosomal RNA methyltransferase RrmJ/FtsJ YP_004693897.1 KEGG: nit:NAL212_2076 hypothetical protein; TIGRFAM: RNA-binding, CRM domain, prokaryote; PFAM: RNA-binding, CRM domain YP_004693898.1 TIGRFAM: Prokaryotic transcription elongation factor GreA; HAMAP: Transcription elongation factor greA; KEGG: nit:NAL212_2075 transcription elongation factor GreA; PFAM: Transcription elongation factor, GreA/GreB region, prokaryotic YP_004693899.1 KEGG: nit:NAL212_2074 carbamoyl-phosphate synthase, large subunit; TIGRFAM: Carbamoyl phosphate synthase, large subunit, glutamine-dependent; PFAM: Carbamoyl phosphate synthetase, large subunit, ATP-binding; Carbamoyl phosphate synthase, large subunit, N-terminal; Carbamoyl phosphate synthetase, large subunit, oligomerisation; MGS-like YP_004693900.1 KEGG: nit:NAL212_2073 carbamoyl-phosphate synthase, small subunit; TIGRFAM: Carbamoyl phosphate synthase, small subunit; PFAM: Carbamoyl phosphate synthase, small subunit, N-terminal; Glutamine amidotransferase class-I, C-terminal YP_004693901.1 KEGG: nit:NAL212_1105 oxaloacetate decarboxylase alpha subunit; TIGRFAM: Oxaloacetate decarboxylase, alpha subunit; PFAM: Conserved carboxylase region; Pyruvate carboxyltransferase; Biotin/lipoyl attachment YP_004693902.1 KEGG: nit:NAL212_1106 acetyl-CoA carboxylase, biotin carboxylase; TIGRFAM: Acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl phosphate synthetase, large subunit, ATP-binding; Carbamoyl phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal YP_004693903.1 KEGG: pca:Pcar_3050 hypothetical protein YP_004693904.1 PFAM: 5'-Nucleotidase, C-terminal; Metallophosphoesterase; KEGG: ava:Ava_3996 metallophosphoesterase YP_004693905.1 KEGG: nit:NAL212_2775 hypothetical protein YP_004693906.1 PFAM: Cytochrome P450; KEGG: nit:NAL212_2776 cytochrome P450 YP_004693908.1 PFAM: Protein of unknown function DUF82; KEGG: sti:Sthe_2697 protein of unknown function DUF82 YP_004693909.1 KEGG: nit:NAL212_1324 hypothetical protein YP_004693910.1 KEGG: tnp:Tnap_1460 DNA-(apurinic or apyrimidinic site) lyase / pyrimidine dimer DNA glycosylase YP_004693911.1 KEGG: mmb:Mmol_1803 protein of unknown function DUF1555 YP_004693912.1 KEGG: nit:NAL212_2285 hypothetical protein YP_004693913.1 TIGRFAM: Peptidase A8, signal peptidase II; HAMAP: Peptidase A8, signal peptidase II; KEGG: nit:NAL212_2286 lipoprotein signal peptidase; PFAM: Peptidase A8, signal peptidase II YP_004693914.1 TIGRFAM: Isoleucyl-tRNA synthetase, class Ia; HAMAP: Isoleucyl-tRNA synthetase; KEGG: nit:NAL212_2287 isoleucyl-tRNA synthetase YP_004693915.1 TIGRFAM: Riboflavin kinase/FAD synthetase; KEGG: nit:NAL212_2288 riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase YP_004693916.1 PFAM: Transposase, IS4-like; KEGG: xbo:XBJ1_1885 transposase YP_004693917.1 KEGG: nit:NAL212_2756 regulatory protein TetR; manually curated; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal YP_004693918.1 PFAM: UBA/THIF-type NAD/FAD binding fold; MoeZ/MoeB; KEGG: nit:NAL212_2755 UBA/ThiF-type NAD/FAD binding protein YP_004693919.1 TIGRFAM: Peptidase S41A, C-terminal protease; PFAM: Peptidase S41; PDZ/DHR/GLGF; KEGG: nit:NAL212_2754 carboxyl-terminal protease; SMART: Peptidase S41; PDZ/DHR/GLGF YP_004693920.1 PFAM: Peptidase M23; KEGG: nit:NAL212_2753 peptidase M23 YP_004693921.1 TIGRFAM: Phosphoglycerate mutase 1; HAMAP: Phosphoglycerate mutase 1; KEGG: nit:NAL212_2752 phosphoglycerate mutase 1 family; PFAM: Phosphoglycerate mutase YP_004693922.1 KEGG: nit:NAL212_2157 rhodanese-like protein; PFAM: Rhodanese-like; SMART: Rhodanese-like YP_004693923.1 KEGG: nit:NAL212_2156 glutaredoxin 3; TIGRFAM: Glutaredoxin, GrxC; PFAM: Glutaredoxin YP_004693924.1 TIGRFAM: Bacterial protein export chaperone SecB; HAMAP: Bacterial protein export chaperone SecB; KEGG: nit:NAL212_2155 protein-export protein SecB; PFAM: Bacterial protein export chaperone SecB YP_004693925.1 PFAM: Protein of unknown function DUF1058; KEGG: nit:NAL212_2154 hypothetical protein YP_004693926.1 KEGG: nit:NAL212_2153 NAD-dependent glycerol-3-phosphate dehydrogenase domain-containing protein; HAMAP: Glycerol-3-phosphate dehydrogenase [NAD(P)+]; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal; NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal YP_004693927.1 KEGG: nit:NAL212_2152 histone family protein DNA-binding protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein YP_004693928.1 PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; SurA N-terminal; KEGG: nit:NAL212_2151 PpiC-type peptidyl-prolyl cis-trans isomerase YP_004693929.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: nit:NAL212_2150 enoyl-(acyl-carrier-protein) reductase (NADH) YP_004693930.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: nit:NAL212_2149 ABC-type transporter, periplasmic subunit YP_004693931.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: nit:NAL212_2148 ABC-type transporter, integral membrane subunit YP_004693932.1 PFAM: CoA-binding; GCN5-related N-acetyltransferase; KEGG: gca:Galf_1381 CoA-binding domain-containing protein YP_004693933.1 PFAM: Histone deacetylase superfamily; KEGG: gca:Galf_1380 histone deacetylase superfamily YP_004693935.1 KEGG: nit:NAL212_1598 phenylacetic acid degradation-like protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily YP_004693936.1 KEGG: nit:NAL212_1599 hypothetical protein YP_004693937.1 KEGG: afe:Lferr_0145 transposase YP_004693938.1 KEGG: afe:Lferr_0146 hypothetical protein YP_004693939.1 KEGG: nit:NAL212_1600 hypothetical protein YP_004693940.1 KEGG: nit:NAL212_1602 L-serine dehydratase 1; TIGRFAM: Iron-sulphur-dependent L-serine dehydratase single chain form; PFAM: Serine dehydratase alpha chain; Serine dehydratase beta chain YP_004693941.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS fold-3; PAS fold-4; PAS fold; KEGG: slt:Slit_0879 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS; PAC motif YP_004693942.1 TIGRFAM: thiopurine S-methyltransferase, Se/Te detoxification family; HAMAP: Thiopurine S-methyltransferase; KEGG: nmu:Nmul_A2259 thiopurine S-methyltransferase; PFAM: Thiopurine S-methyltransferase YP_004693943.1 KEGG: nit:NAL212_0207 allophanate hydrolase; TIGRFAM: Allophanate hydrolase; PFAM: Amidase YP_004693944.1 TIGRFAM: Urea carboxylase; Allophanate hydrolase subunit 2; PFAM: Allophanate hydrolase subunit 2; Carbamoyl phosphate synthetase, large subunit, ATP-binding; Carbamoyl phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Biotin/lipoyl attachment; KEGG: nit:NAL212_0208 UreA carboxylase; SMART: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1 YP_004693945.1 KEGG: nmu:Nmul_A0942 hypothetical protein; TIGRFAM: Urea carboxylase-associated protein 1; PFAM: Domain of unknown function DUF1989 YP_004693946.1 KEGG: nit:NAL212_0210 UreA carboxylase-associated protein 2; TIGRFAM: Urea carboxylase-associated protein 2; PFAM: Domain of unknown function DUF1989 YP_004693947.1 PFAM: Amino acid permease-associated region; KEGG: nit:NAL212_0211 amino acid permease-associated region YP_004693949.1 KEGG: nwa:Nwat_2514 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004693950.1 KEGG: nit:NAL212_0298 hypothetical protein YP_004693951.1 PFAM: Aminotransferase, class V/Cysteine desulfurase; KEGG: nit:NAL212_0299 serine--pyruvate transaminase YP_004693952.1 PFAM: Glycosyl transferase, family 4, conserved region; KEGG: nit:NAL212_0300 glycosyl transferase 4 YP_004693953.1 PFAM: Polysaccharide biosynthesis protein CapD-like; KEGG: nit:NAL212_0301 polysaccharide biosynthesis protein CapD YP_004693954.1 PFAM: ABC transporter-like; ABC transporter, transmembrane region; KEGG: nit:NAL212_0302 xenobiotic-transporting ATPase YP_004693955.1 KEGG: nit:NAL212_0303 glucose-1-phosphate thymidylyltransferase; TIGRFAM: Glucose-1-phosphate thymidylyltransferase, long form; PFAM: Nucleotidyl transferase YP_004693956.1 KEGG: nit:NAL212_0304 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related YP_004693957.1 KEGG: nit:NAL212_0305 DNA repair protein RadA; TIGRFAM: DNA repair protein RadA; SMART: ATPase, AAA+ type, core YP_004693958.1 KEGG: nit:NAL212_0306 alkaline phytoceramidase YP_004693959.1 KEGG: pph:Ppha_2274 hypothetical protein YP_004693960.1 KEGG: nit:NAL212_2812 DEAD/DEAH box helicase domain-containing protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004693961.1 SMART: RNA-binding S4; TIGRFAM: Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; KEGG: nit:NAL212_2811 tyrosyl-tRNA synthetase; HAMAP: Tyrosyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib; RNA-binding S4 YP_004693962.1 PFAM: Peptidase M23; KEGG: nit:NAL212_2810 peptidase M23 YP_004693963.1 KEGG: nit:NAL212_2809 hypothetical protein; HAMAP: Anhydro-N-acetylmuramic acid kinase; PFAM: Anhydro-N-acetylmuramic acid kinase YP_004693964.1 TIGRFAM: FeS cluster insertion; HAMAP: Iron--sulfur cluster insertion protein erpA; KEGG: nit:NAL212_2808 iron-sulfur cluster assembly accessory protein; PFAM: FeS cluster biogenesis YP_004693965.1 PFAM: Protein of unknown function DUF583; KEGG: nit:NAL212_2807 hypothetical protein YP_004693966.1 KEGG: nit:NAL212_2806 hypothetical protein YP_004693967.1 TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; HAMAP: N-acetyl-gamma-glutamyl-phosphate reductase; KEGG: nit:NAL212_2805 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase, NAD-binding; Semialdehyde dehydrogenase, dimerisation region YP_004693968.1 PFAM: Ribosomal protein S9; KEGG: nit:NAL212_2804 30S ribosomal protein S9 YP_004693969.1 KEGG: nit:NAL212_2803 50S ribosomal protein L13; TIGRFAM: Ribosomal protein L13, bacterial-type; PFAM: Ribosomal protein L13 YP_004693970.1 TIGRFAM: Glutaminyl-tRNA synthetase, class Ic; HAMAP: Glutaminyl-tRNA synthetase; KEGG: nit:NAL212_2802 glutaminyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain YP_004693971.1 PFAM: Nucleotidyltransferase; KEGG: neu:NE2231 hypothetical protein YP_004693972.1 PFAM: Protein of unknown function DUF86; KEGG: pph:Ppha_1588 protein of unknown function DUF86 YP_004693973.1 KEGG: slt:Slit_1337 hypothetical protein YP_004693974.1 KEGG: vex:VEA_003227 hypothetical protein YP_004693975.1 KEGG: bid:Bind_1249 TPR repeat-containing protein YP_004693976.1 KEGG: nit:NAL212_1762 Tex-like protein; PFAM: Tex-like protein, N-terminal; Ribosomal protein S1, RNA binding domain; SMART: Resolvase, RNase H-like fold YP_004693977.1 KEGG: nit:NAL212_1761 hypothetical protein YP_004693978.1 PFAM: exonuclease, RdgC; KEGG: nit:NAL212_1760 exonuclease RdgC YP_004693979.1 KEGG: nit:NAL212_1759 hypothetical protein YP_004693980.1 TIGRFAM: Seryl-tRNA synthetase, class IIa; HAMAP: Seryl-tRNA synthetase; KEGG: nit:NAL212_1758 seryl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; Seryl-tRNA synthetase, class IIa, N-terminal YP_004693981.1 KEGG: nit:NAL212_1757 MgsA AAA+ ATPase domain-containing protein; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core YP_004693982.1 TIGRFAM: Outer membrane lipoprotein carrier protein LolA, Proteobacteria; HAMAP: Outer membrane lipoprotein carrier protein LolA, Proteobacteria; KEGG: nit:NAL212_1756 outer membrane lipoprotein carrier protein LolA; PFAM: Outer membrane lipoprotein carrier protein LolA YP_004693983.1 KEGG: nit:NAL212_1755 cell division protein FtsK/SpoIIIE; PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SMART: ATPase, AAA+ type, core YP_004693984.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: nit:NAL212_1754 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004693985.1 PFAM: RDD; KEGG: nit:NAL212_1753 RDD domain containing protein YP_004693986.1 KEGG: nit:NAL212_1752 TonB family protein; TIGRFAM: TonB, C-terminal; PFAM: Gram-negative bacterial tonB protein YP_004693987.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: nit:NAL212_1751 MotA/TolQ/ExbB proton channel YP_004693988.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: nit:NAL212_1750 biopolymer transport protein ExbD/TolR YP_004693989.1 PFAM: BFD-like [2Fe-2S]-binding region; KEGG: nit:NAL212_1603 BFD domain-containing protein (2Fe-2S)-binding domain-containing protein YP_004693990.1 KEGG: nit:NAL212_1604 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; Secretin/TonB, short N-terminal YP_004693991.1 KEGG: nit:NAL212_1605 hypothetical protein YP_004693992.1 PFAM: Multicopper oxidase, type 2; Multicopper oxidase, type 3; KEGG: tgu:100223630 similar to hephaestin YP_004693993.1 PFAM: Haemolysin-type calcium-binding region; KEGG: nit:NAL212_1036 hemolysin-type calcium-binding toxin YP_004693994.1 KEGG: nit:NAL212_1037 cytidyltransferase-related domain-containing protein; TIGRFAM: Cytidyltransferase-related; PFAM: Cytidylyltransferase; LicD-like YP_004693995.1 TIGRFAM: PAS; PFAM: RNA polymerase sigma factor 54, interaction; PAS fold; Helix-turn-helix, Fis-type; KEGG: azc:AZC_0759 transcriptional regulator; SMART: ATPase, AAA+ type, core; PAS YP_004693996.1 KEGG: nit:NAL212_1516 hypothetical protein YP_004693997.1 KEGG: nit:NAL212_2582 cytochrome c class I YP_004693998.1 PFAM: Cytochrome c, class I; KEGG: nit:NAL212_2581 gluconate 2-dehydrogenase (acceptor) YP_004693999.1 KEGG: nit:NAL212_1790 peptidase S1 and S6 chymotrypsin/Hap; PFAM: Peptidase S1/S6, chymotrypsin/Hap; SMART: PDZ/DHR/GLGF YP_004694000.1 KEGG: nit:NAL212_1789 thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain YP_004694001.1 KEGG: nit:NAL212_1788 MerR family transcriptional regulator YP_004694002.1 KEGG: nit:NAL212_1787 heat shock protein DnaJ domain-containing protein; PFAM: Heat shock protein DnaJ, N-terminal; Chaperone DnaJ, C-terminal; SMART: Heat shock protein DnaJ, N-terminal YP_004694003.1 PFAM: Protein of unknown function DUF839, bacterial; KEGG: nit:NAL212_0846 hypothetical protein YP_004694004.1 KEGG: nit:NAL212_0845 ABC drug efflux pump, inner membrane subunit, DrrB family YP_004694005.1 KEGG: meh:M301_2279 protein of unknown function DUF1555; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_004694006.1 PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 2; KEGG: sur:STAUR_6102 multicopper oxidase YP_004694007.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: nit:NAL212_0843 metal dependent phosphohydrolase YP_004694008.1 PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 2; KEGG: nit:NAL212_2028 bilirubin oxidase YP_004694009.1 PFAM: Transposase, IS4-like; KEGG: tgr:Tgr7_1308 ISRSO18-transposase YP_004694010.1 manually curated; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; KEGG: mgm:Mmc1_3408 response regulator receiver modulated metal dependent phosphohydrolase; SMART: Metal-dependent phosphohydrolase, HD region YP_004694011.1 PFAM: aminopeptidase; KEGG: nit:NAL212_1614 aminopeptidase YP_004694012.1 KEGG: nit:NAL212_0951 hypothetical protein YP_004694013.1 KEGG: nit:NAL212_0950 hypothetical protein YP_004694014.1 PFAM: Outer membrane efflux protein; KEGG: nit:NAL212_0949 outer membrane efflux protein YP_004694015.1 KEGG: nit:NAL212_0948 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004694016.1 KEGG: nit:NAL212_0947 heavy metal efflux pump, CzcA family; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein YP_004694017.1 PFAM: Protein of unknown function DUF1504; KEGG: pna:Pnap_2982 hypothetical protein YP_004694018.1 PFAM: Protein of unknown function DUF1499; KEGG: nit:NAL212_1958 hypothetical protein YP_004694019.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; Diverse 7TM receptor, transmembrane region; Diverse 7TM receptor, extracellular region 2; KEGG: nit:NAL212_1843 periplasmic/7TM domain sensor diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004694020.1 KEGG: nit:NAL212_1844 hypothetical protein YP_004694022.1 KEGG: ccb:Clocel_2288 hypothetical protein YP_004694023.1 PFAM: Sulphatase-modifying factor; MTH538 TIR-like domain; KEGG: app:CAP2UW1_2320 hypothetical protein YP_004694024.1 KEGG: neu:NE2470 NUDIX hydrolase; TIGRFAM: Nucleoside diphosphate pyrophosphatase; PFAM: NUDIX hydrolase domain YP_004694025.1 KEGG: nit:NAL212_2552 hypothetical protein YP_004694027.1 KEGG: nit:NAL212_1927 hypothetical protein YP_004694028.1 PFAM: Di-haem cytochrome c peroxidase; KEGG: net:Neut_1521 cytochrome-c peroxidase YP_004694029.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS fold; GAF; KEGG: nit:NAL212_2868 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS; PAC motif YP_004694030.1 KEGG: nmu:Nmul_A0201 K+ potassium transporter; HAMAP: Low affinity potassium transport system protein kup; PFAM: K+ potassium transporter YP_004694031.1 KEGG: nit:NAL212_1935 kelch repeat type 1-containing protein; PFAM: Kelch repeat type 1; SMART: Kelch repeat type 1 YP_004694032.1 PFAM: Domain of unknown function DUF1731, C-terminal; NAD-dependent epimerase/dehydratase; KEGG: nit:NAL212_1241 NAD-dependent epimerase/dehydratase YP_004694033.1 PFAM: Amidohydrolase 3; KEGG: mei:Msip34_2683 amidohydrolase 3 YP_004694034.1 KEGG: mep:MPQ_2622 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF894, DitE YP_004694035.1 PFAM: Pirin, N-terminal; Pirin, C-terminal; KEGG: neu:NE2144 hypothetical protein YP_004694036.1 PFAM: Isochorismatase-like; KEGG: cti:RALTA_A0684 isochorismatase hydrolase YP_004694037.1 SMART: Beta-propeller repeat TECPR; KEGG: met:M446_1014 hypothetical protein YP_004694038.1 KEGG: bxe:Bxe_A2479 cytoplasmic protein YP_004694039.1 KEGG: nit:NAL212_2650 RIO-like kinase; PFAM: RIO-like kinase; SMART: RIO kinase YP_004694041.1 KEGG: neu:NE0744 hypothetical protein YP_004694042.1 KEGG: tmz:Tmz1t_0436 hypothetical protein YP_004694043.1 KEGG: nit:NAL212_1926 response regulator receiver modulated CheW protein; PFAM: CheW-like protein; Signal transduction response regulator, receiver region; SMART: CheW-like protein; Signal transduction response regulator, receiver region YP_004694045.1 KEGG: nit:NAL212_1189 diguanylate phosphodiesterase metal dependent hydrolase domain; PFAM: Diguanylate phosphodiesterase, predicted; Metal-dependent hydrolase HDOD; SMART: Diguanylate phosphodiesterase, predicted YP_004694046.1 KEGG: nit:NAL212_1190 abortive infection protein YP_004694047.1 PFAM: Phosphoadenosine phosphosulphate reductase; KEGG: nit:NAL212_2199 phosphoadenylyl-sulfate reductase (thioredoxin) YP_004694048.1 KEGG: nit:NAL212_2198 proline iminopeptidase; TIGRFAM: Peptidase S33, proline iminopeptidase 1; PFAM: Alpha/beta hydrolase fold-1 YP_004694049.1 KEGG: nit:NAL212_2197 hypothetical protein YP_004694050.1 PFAM: Patatin; KEGG: nit:NAL212_2196 patatin YP_004694051.1 KEGG: nit:NAL212_2195 integral membrane protein, YjbE family; TIGRFAM: integral membrane protein, YjbE family; PFAM: Integral membrane protein TerC YP_004694052.1 PFAM: UspA; KEGG: nit:NAL212_2194 UspA domain-containing protein YP_004694053.1 KEGG: nit:NAL212_2193 cyclic-AMP phosphodiesterase YP_004694054.1 KEGG: nit:NAL212_2192 phytochrome sensor protein; PFAM: Type II secretion system protein E; General secretory system II, protein E, N-terminal; SMART: GAF YP_004694055.1 KEGG: gca:Galf_2551 pilus biogenesis protein TapA precursor YP_004694056.1 KEGG: nit:NAL212_2189 (glutamate--ammonia-ligase) adenylyltransferase; HAMAP: Glutamate-ammonia-ligase adenylyltransferase; PFAM: Glutamate-ammonia ligase adenylyltransferase; PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase YP_004694057.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: nit:NAL212_2187 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004694058.1 PFAM: Peptidase U62, modulator of DNA gyrase; KEGG: nit:NAL212_2186 peptidase U62 modulator of DNA gyrase YP_004694059.1 KEGG: nit:NAL212_2185 acetolactate synthase, large subunit, biosynthetic type; TIGRFAM: Acetolactate synthase, large subunit, biosynthetic; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding region; Thiamine pyrophosphate enzyme, central region; Thiamine pyrophosphate enzyme, C-terminal TPP-binding YP_004694060.1 manually curated; TIGRFAM: Acetolactate synthase, small subunit; KEGG: nit:NAL212_2184 acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit, C-terminal; Amino acid-binding ACT YP_004694061.1 TIGRFAM: Acetohydroxy acid isomeroreductase; HAMAP: Ketol-acid reductoisomerase; KEGG: nit:NAL212_2183 ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase, catalytic; Acetohydroxy acid isomeroreductase C-terminal YP_004694062.1 TIGRFAM: Phosphatidylserine decarboxylase-related protein; HAMAP: Phosphatidylserine decarboxylase proenzyme; KEGG: nit:NAL212_2182 phosphatidylserine decarboxylase-like protein; PFAM: Phosphatidylserine decarboxylase-related YP_004694063.1 KEGG: nit:NAL212_2181 CDP-diacylglycerol/serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_004694064.1 KEGG: nit:NAL212_2180 2-isopropylmalate synthase; TIGRFAM: Bacterial 2-isopropylmalate synthase; PFAM: Pyruvate carboxyltransferase; 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain YP_004694065.1 PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: nit:NAL212_2179 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_004694066.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: nit:NAL212_2178 lytic transglycosylase catalytic YP_004694067.1 TIGRFAM: Prolyl-tRNA synthetase, class IIa, bacterial; HAMAP: Prolyl-tRNA synthetase; KEGG: nit:NAL212_2177 prolyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; YbaK/aminoacyl-tRNA synthetase associated region; Anticodon-binding YP_004694068.1 KEGG: nit:NAL212_2176 NUDIX hydrolase; HAMAP: RNA pyrophosphohydrolase; PFAM: NUDIX hydrolase domain YP_004694069.1 PFAM: Di-haem cytochrome c peroxidase; KEGG: nit:NAL212_2175 cytochrome-c peroxidase YP_004694070.1 TIGRFAM: Host factor Hfq; HAMAP: Protein hfq; KEGG: nit:NAL212_2174 RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein, core YP_004694071.1 KEGG: nit:NAL212_2173 GTP-binding proten HflX; TIGRFAM: GTP-binding protein, HflX; Small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related YP_004694072.1 TIGRFAM: HflK; PFAM: Band 7 protein; KEGG: nit:NAL212_2172 HflK protein; SMART: Band 7 protein YP_004694073.1 TIGRFAM: HflC; PFAM: Band 7 protein; KEGG: nit:NAL212_2171 HflC protein; SMART: Band 7 protein YP_004694074.1 PFAM: Protein of unknown function DUF2065; KEGG: nit:NAL212_2170 hypothetical protein YP_004694075.1 TIGRFAM: Histidyl-tRNA synthetase, class IIa, HAMAP: ATP phosphoribosyltransferase regulatory subunit; KEGG: nit:NAL212_2169 histidyl-tRNA synthetase 2; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region YP_004694076.1 SMART: Adenylosuccinate synthetase; TIGRFAM: Adenylosuccinate synthetase; KEGG: nit:NAL212_2168 adenylosuccinate synthetase; HAMAP: Adenylosuccinate synthetase; PFAM: Adenylosuccinate synthetase YP_004694077.1 PFAM: GCN5-related N-acetyltransferase; KEGG: nit:NAL212_2167 GCN5-like N-acetyltransferase YP_004694079.1 KEGG: nit:NAL212_1809 hypothetical protein YP_004694080.1 TIGRFAM: Ribosomal protein S20; HAMAP: Ribosomal protein S20; KEGG: nit:NAL212_1808 30S ribosomal protein S20; PFAM: Ribosomal protein S20 YP_004694081.1 KEGG: nit:NAL212_2750 hydroxylamine oxidase YP_004694082.1 KEGG: nit:NAL212_2749 hypothetical protein YP_004694083.1 KEGG: nit:NAL212_2748 cytochrome c-554 YP_004694084.1 PFAM: NapC/NirT cytochrome c, N-terminal; KEGG: nit:NAL212_2747 NapC/NirT cytochrome c domain-containing protein YP_004694085.1 KEGG: nit:NAL212_1803 DEAD/DEAH box helicase domain-containing protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004694086.1 PFAM: Transposase, IS4-like; KEGG: gur:Gura_1234 hypothetical protein YP_004694087.1 KEGG: nit:NAL212_2147 translation elongation factor Tu; TIGRFAM: Translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFTu/EF1A, C-terminal YP_004694088.1 KEGG: nit:NAL212_2146 preprotein translocase, SecE subunit; TIGRFAM: SecE subunit of protein translocation complex; PFAM: Protein secE/sec61-gamma protein YP_004694089.1 TIGRFAM: Transcription antitermination protein, NusG; PFAM: Transcription antitermination protein, NusG, N-terminal; KOW; KEGG: nit:NAL212_2145 NusG antitermination factor; SMART: Transcription antitermination protein, NusG, N-terminal; KOW YP_004694090.1 TIGRFAM: Ribosomal protein L11, bacterial-type; PFAM: Ribosomal protein L11, N-terminal; Ribosomal protein L11, C-terminal; KEGG: nit:NAL212_2144 50S ribosomal protein L11; SMART: Ribosomal protein L11 YP_004694091.1 KEGG: nit:NAL212_2143 50S ribosomal protein L1; TIGRFAM: Ribosomal protein L1, bacterial-type; PFAM: Ribosomal protein L1 YP_004694092.1 KEGG: nit:NAL212_2142 50S ribosomal protein L10; HAMAP: 50S ribosomal protein L10; PFAM: Ribosomal protein L10 YP_004694093.1 TIGRFAM: Ribosomal protein L7/L12; HAMAP: Ribosomal protein L7/L12; KEGG: nit:NAL212_2141 50S ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12, C-terminal YP_004694094.1 TIGRFAM: DNA-directed RNA polymerase, beta subunit, bacterial-type; HAMAP: DNA-directed RNA polymerase subunit beta; KEGG: nit:NAL212_2140 DNA-directed RNA polymerase, beta subunit; PFAM: DNA-directed RNA polymerase, subunit 2, domain 6; RNA polymerase Rpb2, domain 3; RNA polymerase, beta subunit, protrusion; RNA polymerase Rpb2, domain 2; DNA-directed RNA polymerase, beta subunit, external 1 domain; RNA polymerase Rpb2, domain 7 YP_004694095.1 SMART: RNA polymerase, N-terminal; TIGRFAM: DNA-directed RNA polymerase, subunit beta-prime; KEGG: nit:NAL212_2139 DNA-directed RNA polymerase, beta' subunit; HAMAP: DNA-directed RNA polymerase subunit beta'; PFAM: RNA polymerase Rpb1, domain 1; RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 5 YP_004694096.1 KEGG: nit:NAL212_2750 hydroxylamine oxidase YP_004694097.1 KEGG: nit:NAL212_2749 hypothetical protein YP_004694098.1 KEGG: nit:NAL212_2748 cytochrome c-554 YP_004694099.1 PFAM: NapC/NirT cytochrome c, N-terminal; KEGG: nit:NAL212_2747 NapC/NirT cytochrome c domain-containing protein YP_004694100.1 KEGG: nit:NAL212_2134 hypothetical protein YP_004694101.1 KEGG: nit:NAL212_2133 threonyl-tRNA synthetase; TIGRFAM: Threonyl-tRNA synthetase, class IIa; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; Threonyl/alanyl tRNA synthetase, SAD; TGS; Anticodon-binding YP_004694102.1 TIGRFAM: Translation initiation factor 3; HAMAP: Translation initiation factor IF-3; KEGG: nit:NAL212_2132 translation initiation factor IF-3; PFAM: Translation initiation factor 3, C-terminal; Translation initiation factor 3, N-terminal YP_004694103.1 TIGRFAM: Ribosomal protein L35; HAMAP: Ribosomal protein L35; KEGG: nit:NAL212_2131 50S ribosomal protein L35; PFAM: Ribosomal protein L35 YP_004694104.1 TIGRFAM: Ribosomal protein L20; HAMAP: Ribosomal protein L20; KEGG: nit:NAL212_2130 50S ribosomal protein L20; PFAM: Ribosomal protein L20 YP_004694105.1 TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, alpha subunit; HAMAP: Phenylalanyl-tRNA synthetase alpha chain; KEGG: nit:NAL212_2129 phenylalanyl-tRNA synthetase, alpha subunit; PFAM: Phenylalanyl-tRNA synthetase alpha chain; Phenylalanyl-tRNA synthetase, class II, N-terminal YP_004694106.1 TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; HAMAP: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; KEGG: nit:NAL212_2128 phenylalanyl-tRNA synthetase, beta subunit YP_004694107.1 SMART: Histone-like bacterial DNA-binding protein; TIGRFAM: Integration host factor, alpha subunit; KEGG: nit:NAL212_2127 integration host factor, alpha subunit; HAMAP: Integration host factor, alpha subunit; PFAM: Histone-like bacterial DNA-binding protein YP_004694108.1 KEGG: nit:NAL212_2126 regulatory protein MerR; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR YP_004694109.1 TIGRFAM: Survival protein SurE-like phosphatase/nucleotidase; HAMAP: Multifunctional protein surE; KEGG: nit:NAL212_2125 stationary-phase survival protein SurE; PFAM: Survival protein SurE-like phosphatase/nucleotidase YP_004694110.1 TIGRFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; HAMAP: Protein-L-isoaspartate O-methyltransferase; KEGG: nit:NAL212_2124 protein-L-isoaspartate O-methyltransferase; PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_004694111.1 KEGG: nit:NAL212_2123 peptidase M23; PFAM: Peptidase M23; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup YP_004694112.1 KEGG: nmu:Nmul_A2165 hypothetical protein YP_004694113.1 PFAM: Aminotransferase, class I/II; KEGG: nit:NAL212_1611 aspartate transaminase YP_004694114.1 PFAM: Homoserine dehydrogenase, catalytic; Aspartate/homoserine dehydrogenase, NAD-binding; Amino acid-binding ACT; KEGG: nit:NAL212_1612 homoserine dehydrogenase YP_004694115.1 KEGG: nit:NAL212_1613 threonine synthase; TIGRFAM: Threonine synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit YP_004694116.1 KEGG: nit:NAL212_2775 hypothetical protein YP_004694117.1 KEGG: mmb:Mmol_0746 hypothetical protein YP_004694118.1 KEGG: nit:NAL212_1786 hypothetical protein YP_004694119.1 KEGG: nit:NAL212_1785 succinate dehydrogenase and fumarate reductase iron-sulfur protein; TIGRFAM: Succinate dehydrogenase/fumarate reductase iron-sulphur protein; PFAM: Ferredoxin YP_004694120.1 PFAM: Protein of unknown function DUF339; KEGG: nit:NAL212_1784 hypothetical protein YP_004694121.1 KEGG: nit:NAL212_1783 citrate synthase I; TIGRFAM: Citrate synthase, type II; PFAM: Citrate synthase-like YP_004694122.1 KEGG: nit:NAL212_1782 2-oxoglutarate dehydrogenase, E1 subunit; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 component; PFAM: Transketolase-like, pyrimidine-binding domain; Dehydrogenase, E1 component YP_004694123.1 KEGG: nit:NAL212_1781 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; TIGRFAM: Dihydrolipoamide succinyltransferase; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding YP_004694124.1 PFAM: PEP-CTERM bacterial; KEGG: cps:CPS_4565 hypothetical protein YP_004694125.1 KEGG: meh:M301_0967 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp YP_004694126.1 TIGRFAM: PAS; PFAM: Signal transduction response regulator, receiver region; KEGG: meh:M301_0966 response regulator receiver protein; SMART: Signal transduction response regulator, receiver region YP_004694127.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold-4; PAS fold; Signal transduction response regulator, receiver region; KEGG: sfr:Sfri_1019 PAS/PAC sensor hybrid histidine kinase; SMART: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; PAC motif YP_004694128.1 TIGRFAM: DNA polymerase III, alpha subunit; PFAM: Bacterial DNA polymerase III, alpha subunit; PHP, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: nit:NAL212_1467 DNA polymerase III, alpha subunit; SMART: Polymerase/histidinol phosphatase, N-terminal YP_004694129.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: nit:NAL212_1469 alpha/beta hydrolase fold protein YP_004694130.1 TIGRFAM: PAS; PFAM: Chemotaxis methyl-accepting receptor, signalling; PAS fold-3; HAMP linker domain; KEGG: nit:NAL212_0245 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; PAS YP_004694131.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold-3; KEGG: nit:NAL212_1289 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAC motif YP_004694132.1 KEGG: nit:NAL212_1290 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004694133.1 TIGRFAM: PAS; PFAM: Signal transduction response regulator, receiver region; PAS fold; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor region; ATP-binding region, ATPase-like; KEGG: nit:NAL212_1291 multi-sensor signal transduction histidine kinase; SMART: Signal transduction response regulator, receiver region; PAS; PAC motif; ATP-binding region, ATPase-like YP_004694134.1 KEGG: nit:NAL212_1292 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal YP_004694135.1 KEGG: net:Neut_1627 esterase/lipase/thioesterase YP_004694136.1 KEGG: nit:NAL212_1687 ferredoxin 2Fe-2s protein YP_004694137.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: nmu:Nmul_A0979 extracellular solute-binding protein YP_004694138.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: neu:NE1872 spermidine/putrescine transport system permease YP_004694139.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: nmu:Nmul_A0981 binding-protein dependent transport system inner membrane protein YP_004694140.1 TIGRFAM: Spermidine/putrescine ABC transporter ATP-binding subunit; PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: nmu:Nmul_A0982 spermidine/putrescine ABC transporter ATP-binding subunit; SMART: ATPase, AAA+ type, core YP_004694141.1 KEGG: psl:Psta_1889 limonene-12-epoxide hydrolase YP_004694142.1 PFAM: Protein of unknown function DUF676, hydrolase-like; KEGG: cbk:CLL_A1759 serine esterase YP_004694143.1 PFAM: Fatty acid desaturase, type 1; KEGG: net:Neut_1694 fatty acid desaturase YP_004694145.1 KEGG: nit:NAL212_1686 2-polyprenylphenol 6-hydroxylase; TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 YP_004694146.1 KEGG: nit:NAL212_1685 hypothetical protein YP_004694147.1 KEGG: slt:Slit_2431 filamentation induced by cAMP protein Fic; TIGRFAM: Death-on-curing protein; PFAM: Filamentation induced by cAMP/death on curing, related YP_004694148.1 PFAM: Protein of unknown function DUF2191; KEGG: nit:NAL212_2266 hypothetical protein YP_004694149.1 PFAM: Nucleotidyltransferase; KEGG: avn:Avin_07030 nucleotidyltransferase YP_004694150.1 PFAM: Nucleotidyltransferase substrate binding protein, HI0074; KEGG: gur:Gura_2085 hypothetical protein YP_004694151.1 PFAM: DNA methylase, adenine-specific; KEGG: rfr:Rfer_4006 N-6 DNA methylase YP_004694152.1 TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase, B subunit; HAMAP: Glutamyl-tRNA(Gln) amidotransferase, B subunit; KEGG: nit:NAL212_0275 glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, N-terminal; Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, central region; Asn/Gln amidotransferase YP_004694153.1 TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase A subunit; HAMAP: Glutamyl-tRNA(Gln) amidotransferase A subunit; KEGG: nit:NAL212_0274 glutamyl-tRNA(Gln) amidotransferase, A subunit; PFAM: Amidase YP_004694154.1 TIGRFAM: Glu-tRNAGln amidotransferase, C subunit; HAMAP: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; KEGG: nit:NAL212_0273 glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase, C subunit YP_004694155.1 KEGG: nit:NAL212_0272 cell shape determining protein, MreB/Mrl family; TIGRFAM: Cell shape determining protein MreB/Mrl; PFAM: Cell shape determining protein MreB/Mrl YP_004694156.1 KEGG: nit:NAL212_0271 rod shape-determining protein MreC; TIGRFAM: Rod shape-determining protein MreC, subtype; PFAM: Rod shape-determining protein MreC YP_004694157.1 KEGG: nit:NAL212_0270 rod shape-determining protein MreD; TIGRFAM: Cell shape-determining protein MreD; PFAM: Cell shape-determining protein MreD YP_004694158.1 KEGG: nit:NAL212_0269 penicillin-binding protein 2; TIGRFAM: Penicillin-binding protein 2; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain YP_004694159.1 KEGG: nit:NAL212_0268 rod shape-determining protein RodA; TIGRFAM: Rod shape-determining protein RodA; PFAM: Cell cycle protein YP_004694160.1 KEGG: nit:NAL212_0267 rare lipoprotein A; TIGRFAM: Rare lipoprotein A, bacterial; PFAM: Rare lipoprotein A; Sporulation/cell division region, bacteria YP_004694161.1 KEGG: nit:NAL212_2121 HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase YP_004694162.1 KEGG: nit:NAL212_2120 SUA5/YciO/YrdC/YwlC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC; PFAM: Sua5/YciO/YrdC, N-terminal; SUA5 YP_004694163.1 KEGG: nit:NAL212_2119 phospholipase D/transphosphatidylase; PFAM: Phospholipase D/Transphosphatidylase; SMART: Phospholipase D/Transphosphatidylase YP_004694164.1 TIGRFAM: Quinolinate synthetase A; HAMAP: Quinolinate synthase A; KEGG: nit:NAL212_2118 quinolinate synthetase complex, A subunit; PFAM: Quinolinate synthetase A YP_004694165.1 PFAM: Protein of unknown function DUF1239; KEGG: nit:NAL212_2117 hypothetical protein YP_004694166.1 KEGG: nit:NAL212_2116 lipopolysaccharide transport periplasmic protein LptA; TIGRFAM: Cell envelope biogenesis YhbN; PFAM: OstA-like protein YP_004694167.1 KEGG: nit:NAL212_2115 sulfate-transporting ATPase; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004694168.1 KEGG: nit:NAL212_2114 RNA polymerase, sigma 54 subunit, RpoN; TIGRFAM: RNA polymerase sigma factor 54; PFAM: RNA polymerase sigma factor 54, DNA-binding; RNA polymerase sigma factor 54, core-binding; RNA polymerase sigma factor 54 YP_004694169.1 KEGG: nit:NAL212_2113 sigma 54 modulation protein/30S ribosomal protein S30EA; TIGRFAM: Ribosomal protein S30Ae/sigma 54 modulation protein; PFAM: Ribosomal protein S30Ae/sigma 54 modulation protein YP_004694170.1 PFAM: Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; KEGG: nit:NAL212_2112 PTS IIA-like nitrogen-regulatory protein PtsN YP_004694171.1 KEGG: nit:NAL212_2111 HPr kinase; HAMAP: HPr kinase/phosphorylase; PFAM: Signal transduction serine kinase/phosphorylase, HPr(Ser) kinase, C-terminal YP_004694172.1 KEGG: nit:NAL212_2110 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: Phenylacrylic acid decarboxylase; PFAM: Flavoprotein YP_004694173.1 PFAM: PEP-CTERM bacterial; KEGG: nit:NAL212_1622 PEP motif anchor domain-containing protein YP_004694174.1 KEGG: nit:NAL212_2109 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase YP_004694175.1 TIGRFAM: A/G-specific adenine glycosylase MutY, bacterial form; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; KEGG: nit:NAL212_2108 A/G-specific adenine glycosylase; SMART: HhH-GPD domain YP_004694176.1 PFAM: Modulator of Rho-dependent transcription termination; KEGG: nit:NAL212_2107 modulator of Rho-dependent transcription termination YP_004694177.1 KEGG: bpt:Bpet0062 hypothetical protein; HAMAP: Uncharacterised protein family UPF0060; PFAM: Uncharacterised protein family UPF0060 YP_004694178.1 PFAM: YcgR; Type IV pilus assembly PilZ; KEGG: nit:NAL212_2247 YcgR family protein YP_004694179.1 PFAM: Type III secretion exporter; KEGG: nit:NAL212_2246 type III secretion exporter YP_004694180.1 KEGG: nit:NAL212_2245 hypothetical protein YP_004694181.1 PFAM: Flagellar export chaperone; KEGG: nit:NAL212_2244 flagellar export chaperone YP_004694182.1 KEGG: nit:NAL212_2243 flagellar protein FliS; TIGRFAM: Flagellar protein FliS; PFAM: Flagellar protein FliS YP_004694183.1 PFAM: Flagellar hook-associated 2, C-terminal; Flagellar hook-associated protein 2, N-terminal; KEGG: nmu:Nmul_A1339 flagellar hook-associated 2-like YP_004694184.1 PFAM: Flagellar protein FlaG protein; KEGG: nit:NAL212_2241 flagellar protein FlaG protein YP_004694185.1 PFAM: Flagellin, N-terminal; Flagellin hook, IN motif; Flagellin, C-terminal; KEGG: net:Neut_1824 flagellin domain-containing protein YP_004694186.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor region; Signal transduction response regulator, receiver region; PAS fold-3; KEGG: net:Neut_1840 multi-sensor signal transduction histidine kinase; SMART: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like YP_004694187.1 KEGG: nit:NAL212_2236 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal YP_004694188.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: nit:NAL212_0942 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004694189.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: nit:NAL212_1676 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004694190.1 KEGG: nit:NAL212_1675 diguanylate phosphodiesterase metal dependent hydrolase domain; PFAM: Diguanylate phosphodiesterase, predicted; Metal-dependent hydrolase HDOD; SMART: Diguanylate phosphodiesterase, predicted YP_004694191.1 KEGG: nit:NAL212_1673 hypothetical protein YP_004694192.1 KEGG: nit:NAL212_1672 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004694193.1 KEGG: nit:NAL212_1671 CheA signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup, homodimeric; Signal transduction histidine kinase, phosphotransfer (Hpt) region; CheW-like protein; SMART: CheW-like protein; Signal transduction histidine kinase, phosphotransfer (Hpt) region; ATP-binding region, ATPase-like YP_004694194.1 KEGG: nit:NAL212_0265 CheW protein; PFAM: CheW-like protein; SMART: CheW-like protein YP_004694195.1 KEGG: nit:NAL212_0266 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling YP_004694196.1 KEGG: nit:NAL212_1670 MCP methyltransferase, CheR-type; PFAM: MCP methyltransferase, CheR-type; SMART: MCP methyltransferase, CheR-type YP_004694197.1 KEGG: nit:NAL212_1669 CheD; HAMAP: Chemoreceptor glutamine deamidase cheD; PFAM: Chemoreceptor glutamine deamidase cheD YP_004694198.1 HAMAP: Chemotaxis response regulator protein-glutamate methylesterase; PFAM: Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase; Signal transduction response regulator, receiver region; KEGG: nit:NAL212_1668 response regulator receiver modulated CheB methylesterase; SMART: Signal transduction response regulator, receiver region YP_004694199.1 PFAM: NLP/P60; KEGG: nit:NAL212_1667 NLP/P60 protein YP_004694200.1 KEGG: nit:NAL212_3088 lipase YP_004694201.1 KEGG: afr:AFE_2093 hypothetical protein YP_004694202.1 KEGG: nit:NAL212_0064 hypothetical protein YP_004694203.1 KEGG: nit:NAL212_0063 IS66 Orf2 family protein; manually curated; PFAM: Transposase (), IS66 Orf2 like YP_004694204.1 KEGG: nit:NAL212_0062 transposase IS66; manually curated; PFAM: Transposase, IS66 YP_004694205.1 PFAM: Transposase, IS4-like; KEGG: bxe:Bxe_C1199 hypothetical protein YP_004694206.1 TIGRFAM: Mg chelatase-related protein; PFAM: Magnesium chelatase, ChlI subunit; KEGG: nit:NAL212_1204 Mg chelatase, subunit ChlI; SMART: ATPase, AAA+ type, core YP_004694207.1 PFAM: Protein of unknown function DUF526; KEGG: nit:NAL212_1205 hypothetical protein YP_004694208.1 PFAM: Aminoglycoside phosphotransferase; KEGG: nit:NAL212_1206 aminoglycoside phosphotransferase YP_004694209.1 PFAM: Nucleotidyl transferase; KEGG: nit:NAL212_1207 nucleotidyl transferase YP_004694210.1 PFAM: Peptidase M24, structural domain; Peptidase M24B, X-Pro dipeptidase/aminopeptidase P N-terminal; KEGG: nit:NAL212_1208 peptidase M24 YP_004694211.1 KEGG: nit:NAL212_1209 hypothetical protein YP_004694212.1 TIGRFAM: HDIG; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; KEGG: nit:NAL212_0868 metal dependent phosphohydrolase; SMART: Metal-dependent phosphohydrolase, HD region YP_004694213.1 TIGRFAM: tRNA (guanine-N-7) methyltransferase; HAMAP: tRNA (guanine-N(7)-)-methyltransferase; KEGG: nit:NAL212_1398 tRNA (guanine-N(7)-)-methyltransferase; PFAM: tRNA (guanine-N-7) methyltransferase YP_004694214.1 KEGG: nit:NAL212_1399 thiazole biosynthesis family protein; HAMAP: Thiazole biosynthesis; PFAM: Thiazole biosynthesis YP_004694215.1 KEGG: nit:NAL212_1400 thiamine biosynthesis protein ThiS; TIGRFAM: ThiS, thiamine-biosynthesis; PFAM: ThiamineS YP_004694217.1 PFAM: Peptidase M10, serralysin, C-terminal; Haemolysin-type calcium-binding region; KEGG: rsk:RSKD131_3707 hemolysin-type calcium-binding region, RTX YP_004694218.1 PFAM: Transposase, IS4-like; KEGG: pph:Ppha_2646 hypothetical protein YP_004694219.1 PFAM: Transposase, IS116/IS110/IS902; Transposase, IS111A/IS1328/IS1533; KEGG: nhl:Nhal_1988 transposase IS116/IS110/IS902 family protein YP_004694220.1 PFAM: Protein of unknown function DUF46; KEGG: mno:Mnod_8082 protein of unknown function DUF46 YP_004694221.1 PFAM: Metallophosphoesterase; KEGG: msl:Msil_1866 metallophosphoesterase YP_004694222.1 KEGG: ecg:E2348C_2622 predicted helicase; PFAM: SNF2-related; Zinc finger, SWIM-type; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004694223.1 KEGG: tgr:Tgr7_0613 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004694224.1 PFAM: HipA-like, C-terminal; HipA-like, N-terminal; KEGG: cph:Cpha266_2264 HipA domain-containing protein YP_004694225.1 PFAM: GCN5-related N-acetyltransferase; KEGG: nit:NAL212_0903 GCN5-like N-acetyltransferase YP_004694226.1 KEGG: gca:Galf_0890 hypothetical protein YP_004694228.1 manually curated; PFAM: ABC transporter-like; KEGG: nit:NAL212_2655 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004694231.1 PFAM: Endonuclease/exonuclease/phosphatase YP_004694232.1 PFAM: Major facilitator superfamily MFS-1; KEGG: nit:NAL212_2636 major facilitator superfamily MFS_1 YP_004694233.1 KEGG: nha:Nham_3051 hypothetical protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_004694234.1 PFAM: PilT protein, N-terminal; KEGG: noc:Noc_1461 PilT-like protein YP_004694235.1 KEGG: noc:Noc_1462 hypothetical protein YP_004694236.1 PFAM: Methyltransferase type 12; KEGG: nit:NAL212_1395 ribosomal RNA adenine methylase transferase YP_004694237.1 PFAM: Protein of unknown function DUF2130; KEGG: nit:NAL212_1747 hypothetical protein YP_004694240.1 KEGG: nit:NAL212_2030 hypothetical protein YP_004694242.1 PFAM: BRO, N-terminal; KEGG: lhk:LHK_01667 bacteriophage antirepressor YP_004694243.1 KEGG: nit:NAL212_2551 hypothetical protein YP_004694246.1 PFAM: SEC-C motif; KEGG: ppd:Ppro_2581 SecC motif-containing protein YP_004694247.1 KEGG: nit:NAL212_1665 hypothetical protein YP_004694248.1 KEGG: lch:Lcho_2324 hypothetical protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_004694249.1 PFAM: Protein of unknown function DUF81; KEGG: bco:Bcell_3693 protein of unknown function DUF81 YP_004694250.1 KEGG: rfr:Rfer_2484 hypothetical protein YP_004694251.1 KEGG: gca:Galf_0997 hypothetical protein YP_004694252.1 KEGG: nit:NAL212_1525 hypothetical protein YP_004694253.1 PFAM: Diguanylate phosphodiesterase, predicted; KEGG: nit:NAL212_2092 EAL domain-containing protein YP_004694254.1 TIGRFAM: Sulphate transport system permease 1; PFAM: ABC transporter-like; KEGG: nit:NAL212_2091 sulfate ABC transporter, ATPase subunit; SMART: ATPase, AAA+ type, core YP_004694255.1 KEGG: nit:NAL212_2090 sulfate ABC transporter, inner membrane subunit CysW; TIGRFAM: Sulphate ABC transporter, permease CysW; Sulphate ABC transporter permease 2; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004694256.1 KEGG: nit:NAL212_2089 sulfate ABC transporter, inner membrane subunit CysT; TIGRFAM: Sulphate ABC transporter, permease CysT; Sulphate ABC transporter permease 2; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004694257.1 KEGG: nit:NAL212_2088 diguanylate phosphodiesterase; PFAM: Diguanylate phosphodiesterase, predicted; SMART: Diguanylate phosphodiesterase, predicted YP_004694258.1 PFAM: Uncharacterised conserved protein UCP020408; KEGG: neu:NE0581 diverged CheY-domain-containing protein YP_004694259.1 KEGG: nit:NAL212_2087 sulfate ABC transporter, periplasmic sulfate-binding protein; TIGRFAM: Thiosulphate-binding protein; PFAM: Bacterial extracellular solute-binding, family 1 YP_004694260.1 KEGG: nit:NAL212_2086 hypothetical protein YP_004694261.1 PFAM: Protein of unknown function DUF2292; KEGG: nit:NAL212_2085 hypothetical protein YP_004694262.1 KEGG: nit:NAL212_1526 hypothetical protein YP_004694263.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: nit:NAL212_2795 lytic transglycosylase catalytic YP_004694264.1 KEGG: eli:ELI_09275 hypothetical protein YP_004694265.1 KEGG: eli:ELI_09280 hypothetical protein YP_004694266.1 KEGG: eli:ELI_09285 phage tail sheath protein YP_004694267.1 KEGG: eli:ELI_09290 phage tail region protein; TIGRFAM: Conserved hypothetical protein CHP02241, phage tail region protein; PFAM: Conserved hypothetical protein CHP02241, phage tail region protein YP_004694268.1 KEGG: eli:ELI_09295 hypothetical protein YP_004694269.1 KEGG: eli:ELI_09300 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02241, phage tail region protein; PFAM: Conserved hypothetical protein CHP02241, phage tail region protein YP_004694270.1 PFAM: Peptidoglycan-binding lysin domain; KEGG: eli:ELI_09305 hypothetical protein YP_004694272.1 KEGG: eli:ELI_09315 hypothetical protein YP_004694273.1 PFAM: Rhs element Vgr protein; KEGG: eli:ELI_09320 hypothetical protein YP_004694274.1 KEGG: eli:ELI_09325 hypothetical protein YP_004694275.1 PFAM: GPW/gp25; KEGG: eli:ELI_09330 tail lysozyme YP_004694276.1 TIGRFAM: Conserved hypothetical protein CHP02243; KEGG: eli:ELI_09335 hypothetical protein YP_004694277.1 TIGRFAM: Phage tail protein; KEGG: eli:ELI_09340 NHL repeat-containing protein YP_004694278.1 KEGG: eli:ELI_09345 hypothetical protein YP_004694279.1 KEGG: eli:ELI_09350 hypothetical protein YP_004694280.1 KEGG: eli:ELI_09355 hypothetical protein YP_004694281.1 KEGG: eli:ELI_09360 hypothetical protein YP_004694282.1 KEGG: eli:ELI_09365 hypothetical protein YP_004694283.1 KEGG: eli:ELI_09370 ATPase, AAA family protein; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core YP_004694284.1 KEGG: nml:Namu_1897 hypothetical protein YP_004694285.1 KEGG: aex:Astex_1861 hypothetical protein YP_004694286.1 PFAM: Protein of unknown function DUF1311; KEGG: ppw:PputW619_4365 hypothetical protein YP_004694287.1 KEGG: pla:Plav_0939 peptidoglycan-binding domain-containing protein YP_004694288.1 KEGG: bco:Bcell_1138 hypothetical protein YP_004694289.1 PFAM: Transposase, IS4-like; KEGG: tgr:Tgr7_1308 ISRSO18-transposase YP_004694290.1 KEGG: pno:SNOG_05888 hypothetical protein YP_004694292.1 PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; KEGG: nit:NAL212_0911 PpiC-type peptidyl-prolyl cis-trans isomerase YP_004694293.1 KEGG: nit:NAL212_0912 Fe(3+)-transporting ATPase; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004694294.1 PFAM: Protein of unknown function DUF214, permase predicted; KEGG: nit:NAL212_0913 hypothetical protein YP_004694295.1 PFAM: Protein of unknown function DUF2006; KEGG: nit:NAL212_0914 hydroxyneurosporene synthase YP_004694296.1 KEGG: nit:NAL212_0915 hypothetical protein YP_004694297.1 PFAM: Heavy metal transport/detoxification protein; KEGG: nit:NAL212_0804 heavy metal transport/detoxification protein YP_004694298.1 KEGG: nmu:Nmul_A2276 heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: ATPase, P-type, ATPase-associated region; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase YP_004694299.1 KEGG: nit:NAL212_0806 hypothetical protein YP_004694300.1 KEGG: nit:NAL212_0807 sec-independent protein translocase, TatC subunit; TIGRFAM: Twin arginine-targeting protein translocase, TatC; PFAM: Sec-independent periplasmic protein translocase YP_004694301.1 TIGRFAM: Twin-arginine translocation protein TatB; HAMAP: Twin-arginine translocation protein TatB; KEGG: nit:NAL212_0808 twin-arginine translocation protein, TatB subunit; PFAM: Bacterial sec-independent translocation protein mttA/Hcf106 YP_004694302.1 TIGRFAM: Twin-arginine translocation protein TatA/E; HAMAP: Twin-arginine translocation protein TatA/E; KEGG: nit:NAL212_0809 twin-arginine translocation protein, TatA/E family subunit; PFAM: Bacterial sec-independent translocation protein mttA/Hcf106 YP_004694303.1 PFAM: Histidine triad (HIT) protein; KEGG: nit:NAL212_0810 histidine triad (HIT) protein YP_004694304.1 TIGRFAM: Phosphoribosyl-ATP pyrophosphohydrolase; HAMAP: Phosphoribosyl-ATP pyrophosphatase; KEGG: nit:NAL212_0811 phosphoribosyl-ATP diphosphatase; PFAM: Phosphoribosyl-ATP pyrophosphohydrolase YP_004694305.1 KEGG: nit:NAL212_0812 phosphoribosyl-AMP cyclohydrolase; HAMAP: Phosphoribosyl-AMP cyclohydrolase; PFAM: Phosphoribosyl-AMP cyclohydrolase YP_004694306.1 TIGRFAM: Histidine biosynthesis, HisF; HAMAP: Imidazole glycerol phosphate synthase subunit hisF; KEGG: nit:NAL212_0813 imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: Histidine biosynthesis YP_004694307.1 TIGRFAM: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; HAMAP: 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; KEGG: nit:NAL212_0814 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: Histidine biosynthesis YP_004694308.1 TIGRFAM: Imidazole glycerol phosphate synthase, subunit H; HAMAP: Imidazole glycerol phosphate synthase, subunit H; KEGG: nit:NAL212_0815 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: Glutamine amidotransferase class-I, C-terminal YP_004694309.1 KEGG: nit:NAL212_0816 imidazoleglycerol-phosphate dehydratase; HAMAP: Imidazoleglycerol-phosphate dehydratase; PFAM: Imidazoleglycerol-phosphate dehydratase YP_004694310.1 TIGRFAM: Histidinol-phosphate aminotransferase; HAMAP: Histidinol-phosphate aminotransferase; KEGG: nit:NAL212_0817 histidinol-phosphate aminotransferase; PFAM: Aminotransferase, class I/II YP_004694311.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: gpb:HDN1F_37290 hypothetical protein YP_004694312.1 PFAM: Protein of unknown function DUF185; KEGG: nit:NAL212_0818 hypothetical protein YP_004694313.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: nit:NAL212_0819 3-oxoacyl-(acyl-carrier-protein) reductase YP_004694314.1 PFAM: Integrase, catalytic core; KEGG: rso:RSp0548 ISRSO8-transposase orfB protein YP_004694315.1 PFAM: Transposase IS3/IS911; KEGG: gca:Galf_0832 transposase IS3/IS911 family protein YP_004694316.1 TIGRFAM: Uncharacterised protein family UPF0102; HAMAP: Uncharacterised protein family UPF0102; KEGG: nit:NAL212_2320 hypothetical protein; PFAM: Uncharacterised protein family UPF0102 YP_004694317.1 PFAM: LppC lipoprotein; KEGG: nit:NAL212_2321 LppC family lipoprotein YP_004694318.1 TIGRFAM: Uncharacterised protein family UPF0011; HAMAP: Ribosomal RNA small subunit methyltransferase I; KEGG: nit:NAL212_2322 hypothetical protein; PFAM: Tetrapyrrole methylase YP_004694319.1 TIGRFAM: Dihydroorotase homodimeric type; HAMAP: Dihydroorotase; KEGG: nit:NAL212_2323 dihydroorotase; PFAM: Amidohydrolase 1 YP_004694320.1 PFAM: thiol-disulphide oxidoreductase DCC; KEGG: nmu:Nmul_A0353 thiol-disulphide oxidoreductase DCC YP_004694321.1 KEGG: nit:NAL212_2319 hypothetical protein YP_004694322.1 PFAM: Protein of unknown function DUF423; KEGG: nit:NAL212_2721 hypothetical protein YP_004694323.1 TIGRFAM: Exonuclease VII, large subunit; HAMAP: Exodeoxyribonuclease 7 large subunit; KEGG: nit:NAL212_2720 exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type YP_004694324.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: nit:NAL212_0904 MotA/TolQ/ExbB proton channel YP_004694325.1 PFAM: VacJ-like lipoprotein; KEGG: nit:NAL212_0905 VacJ family lipoprotein YP_004694326.1 KEGG: nit:NAL212_0906 squalene/oxidosqualene cyclase; TIGRFAM: Hopene cyclase; Squalene cyclase; PFAM: Prenyltransferase/squalene oxidase YP_004694327.1 KEGG: nit:NAL212_0907 hopanoid-associated phosphorylase; TIGRFAM: Hopanoid-associated phosphorylase HpnG; PFAM: Nucleoside phosphorylase YP_004694328.1 TIGRFAM: ABC transporter, ATP-binding/permease; PFAM: ABC transporter-like; ABC transporter, transmembrane region; KEGG: nit:NAL212_0908 lipid A ABC exporter family, fused ATPase and inner membrane subunits; SMART: ATPase, AAA+ type, core YP_004694330.1 KEGG: kko:Kkor_0385 hypothetical protein YP_004694331.1 KEGG: kko:Kkor_0386 TPA: chitinase C; ChiC YP_004694332.1 PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; KEGG: nit:NAL212_2395 peptidyl-prolyl cis-trans isomerase cyclophilin type YP_004694333.1 KEGG: ajs:Ajs_1500 hypothetical protein YP_004694334.1 PFAM: Transposase, IS4-like; KEGG: amt:Amet_1582 hypothetical protein YP_004694335.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: nit:NAL212_1383 ferredoxin, C-terminal protein YP_004694336.1 TIGRFAM: DNA repair protein, predicted; KEGG: nit:NAL212_1384 DNA repair protein YP_004694337.1 PFAM: DNA helicase, UvrD/REP type; KEGG: nit:NAL212_1385 UvrD/REP helicase YP_004694338.1 KEGG: nit:NAL212_2606 methane monooxygenase/ammonia monooxygenase, subunit C; TIGRFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit C; PFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit C YP_004694339.1 KEGG: nit:NAL212_2605 methane monooxygenase/ammonia monooxygenase, subunit A; TIGRFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit A; PFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit A YP_004694340.1 KEGG: nit:NAL212_2604 methane monooxygenase/ammonia monooxygenase, subunit B; TIGRFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit B; PFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit B YP_004694341.1 KEGG: nde:NIDE2195 thiosulfate sulfurtransferase GlpE; PFAM: Rhodanese-like; SMART: Rhodanese-like YP_004694342.1 PFAM: Amino acid permease-associated region; KEGG: nit:NAL212_1390 amino acid permease-associated region YP_004694343.1 SMART: Serine/threonine-protein kinase domain; KEGG: nit:NAL212_0570 serine/threonine protein kinase YP_004694344.1 KEGG: nit:NAL212_0792 peptidase M10A and M12B matrixin and adamalysin; PFAM: Peptidase M10A/M12B, matrixin/adamalysin; SMART: Peptidase, metallopeptidases YP_004694345.1 KEGG: nmu:Nmul_A0618 cytochrome c1 signal peptide protein YP_004694347.1 TIGRFAM: Signal transduction response regulator, phosphate regulon transcriptional regulatory protein phoB; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; KEGG: nit:NAL212_1104 two component transcriptional regulator PhoB, winged helix family; SMART: Signal transduction response regulator, receiver region YP_004694348.1 PFAM: Protein of unknown function DUF2495; KEGG: noc:Noc_0432 hypothetical protein YP_004694349.1 KEGG: nit:NAL212_2221 hypothetical protein YP_004694350.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: nit:NAL212_2220 MotA/TolQ/ExbB proton channel YP_004694351.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: nit:NAL212_2219 MotA/TolQ/ExbB proton channel YP_004694352.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: nit:NAL212_2218 biopolymer transport protein ExbD/TolR YP_004694353.1 KEGG: nit:NAL212_2217 TonB family protein; TIGRFAM: TonB, C-terminal; PFAM: Gram-negative bacterial tonB protein YP_004694354.1 KEGG: nit:NAL212_2216 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat YP_004694355.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: nit:NAL212_2215 TonB-dependent receptor YP_004694357.1 KEGG: nit:NAL212_2210 hypothetical protein YP_004694358.1 KEGG: nit:NAL212_2208 hypothetical protein YP_004694360.1 KEGG: nit:NAL212_2207 phosphate ABC transporter, periplasmic phosphate-binding protein; TIGRFAM: Periplasmic phosphate binding protein; PFAM: Bacterial extracellular solute-binding, family 1 YP_004694361.1 KEGG: nit:NAL212_2206 phosphate ABC transporter, inner membrane subunit PstC; TIGRFAM: Phosphate ABC transporter, permease PstC; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004694362.1 KEGG: nit:NAL212_2205 phosphate ABC transporter, inner membrane subunit PstA; TIGRFAM: Phosphate transport system permease 2; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004694363.1 TIGRFAM: Phosphate transport system permease 1; PFAM: ABC transporter-like; KEGG: nit:NAL212_2204 phosphate ABC transporter, ATPase subunit; SMART: ATPase, AAA+ type, core YP_004694365.1 KEGG: fra:Francci3_2923 transmembrane protein YP_004694366.1 KEGG: nit:NAL212_0064 hypothetical protein YP_004694367.1 KEGG: nit:NAL212_0063 IS66 Orf2 family protein; manually curated; PFAM: Transposase (), IS66 Orf2 like YP_004694368.1 KEGG: pin:Ping_3152 hypothetical protein YP_004694370.1 KEGG: rcu:RCOM_0136370 hypothetical protein YP_004694371.1 KEGG: neu:NE0744 hypothetical protein YP_004694372.1 KEGG: nit:NAL212_0312 PhoH family protein YP_004694373.1 PFAM: CHAD; KEGG: ttu:TERTU_3714 CHAD domain containing protein YP_004694374.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: ttu:TERTU_3713 cobyrinic acid a,c-diamide synthase YP_004694375.1 PFAM: NUDIX hydrolase domain; KEGG: dps:DP1250 hypothetical protein YP_004694376.1 PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: cro:ROD_26331 prophage DNA adenine methylase YP_004694377.1 PFAM: Pyruvate kinase, barrel; KEGG: tau:Tola_1286 pyruvate kinase YP_004694378.1 KEGG: npu:Npun_R1137 hypothetical protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_004694379.1 KEGG: tbd:Tbd_0366 hypothetical protein YP_004694380.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Cystathionine beta-synthase, core; Diguanylate cyclase, predicted; KEGG: mms:mma_1158 hypothetical protein; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted YP_004694381.1 KEGG: nmu:Nmul_A2093 inorganic diphosphatase; HAMAP: Inorganic pyrophosphatase; PFAM: Inorganic pyrophosphatase YP_004694382.1 TIGRFAM: ATPase, anion-transporting; PFAM: ATPase, anion-transporting; KEGG: nit:NAL212_0386 arsenite-activated ATPase ArsA; SMART: ATPase, AAA+ type, core YP_004694383.1 PFAM: Arsenical resistance operon trans-acting repressor ArsD; KEGG: nit:NAL212_0387 arsenical resistance operon trans-acting repressor ArsD YP_004694384.1 KEGG: nit:NAL212_0084 transcriptional regulator, ArsR family; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004694385.1 KEGG: noc:Noc_0534 hypothetical protein YP_004694386.1 KEGG: afe:Lferr_1426 integrase catalytic subunit; manually curated; PFAM: Integrase, catalytic core YP_004694387.1 KEGG: net:Neut_2500 transposase IS3/IS911; manually curated; PFAM: Transposase IS3/IS911 YP_004694388.1 KEGG: nit:NAL212_2623 peptidase S16 lon domain-containing protein YP_004694389.1 PFAM: Multicopper oxidase, type 2; KEGG: nit:NAL212_2853 multicopper oxidase type 2 YP_004694390.1 PFAM: Multicopper oxidase, type 3; KEGG: nit:NAL212_2852 multicopper oxidase type 3 YP_004694391.1 KEGG: nit:NAL212_2850 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004694392.1 KEGG: nit:NAL212_2849 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein YP_004694393.1 PFAM: 3-dehydroquinate synthase AroB; Shikimate kinase; TIGRFAM: 3-dehydroquinate synthase AroB, subgroup; HAMAP: Shikimate kinase; KEGG: nit:NAL212_2835 shikimate kinase YP_004694394.1 SMART: Metal-dependent phosphohydrolase, HD region; TIGRFAM: Deoxyguanosinetriphosphate triphosphohydrolase; KEGG: nit:NAL212_2834 deoxyguanosinetriphosphate triphosphohydrolase; HAMAP: Deoxyguanosinetriphosphate triphosphohydrolase-like protein; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain YP_004694395.1 TIGRFAM: Uroporphyrinogen decarboxylase HemE; HAMAP: Uroporphyrinogen decarboxylase HemE; KEGG: nit:NAL212_2832 uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D) YP_004694396.1 KEGG: nit:NAL212_2831 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004694397.1 KEGG: nit:NAL212_2830 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004694398.1 PFAM: Protein of unknown function DUF897; KEGG: nit:NAL212_2829 hypothetical protein YP_004694399.1 KEGG: nit:NAL212_2828 hypothetical protein YP_004694400.1 KEGG: nit:NAL212_2827 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase YP_004694401.1 TIGRFAM: Bis(5'-nucleosyl)-tetraphosphatase (symmetrical); HAMAP: Bis(5'-nucleosyl)-tetraphosphatase, symmetrical; KEGG: nit:NAL212_2826 bis(5'-nucleosyl)-tetraphosphatase, symmetrical; PFAM: Metallophosphoesterase YP_004694402.1 TIGRFAM: Dihydrodipicolinate reductase, bacterial/plant; HAMAP: Dihydrodipicolinate reductase; KEGG: nit:NAL212_2825 dihydrodipicolinate reductase; PFAM: Dihydrodipicolinate reductase YP_004694403.1 PFAM: SmpA/OmlA; KEGG: nit:NAL212_2824 SmpA/OmlA domain-containing protein YP_004694404.1 PFAM: Ferric-uptake regulator; KEGG: nit:NAL212_2823 ferric uptake regulator, Fur family YP_004694405.1 KEGG: nit:NAL212_2822 lytic murein transglycosylase; TIGRFAM: Lytic murein transglycosylase; PFAM: Peptidoglycan binding-like YP_004694406.1 TIGRFAM: Malate dehydrogenase, NAD/NADP; HAMAP: Malate dehydrogenase; KEGG: nit:NAL212_2821 malate dehydrogenase; PFAM: Lactate/malate dehydrogenase YP_004694407.1 KEGG: net:Neut_2269 ATPase, P-type (transporting), HAD superfamily, subfamily IC; TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: ATPase, P-type, ATPase-associated region; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase; ATPase, P-type cation-transporter, C-terminal YP_004694408.1 KEGG: nmu:Nmul_A1142 hypothetical protein YP_004694409.1 KEGG: nmu:Nmul_A1142 hypothetical protein YP_004694410.1 PFAM: ATPase, AFG1-like; KEGG: nit:NAL212_1253 AFG1-family ATPase YP_004694411.1 PFAM: Major facilitator superfamily MFS-1; KEGG: nit:NAL212_1254 major facilitator superfamily MFS_1 YP_004694412.1 KEGG: nit:NAL212_1255 exodeoxyribonuclease III Xth; TIGRFAM: Exodeoxyribonuclease III xth; AP endonuclease, family 1; PFAM: Endonuclease/exonuclease/phosphatase YP_004694413.1 TIGRFAM: Orotate phosphoribosyl transferase; HAMAP: Orotate phosphoribosyltransferase; KEGG: nit:NAL212_1256 orotate phosphoribosyltransferase; PFAM: Phosphoribosyltransferase YP_004694414.1 KEGG: nit:NAL212_0590 hypothetical protein YP_004694415.1 PFAM: Protein of unknown function DUF882, bacterial; KEGG: nit:NAL212_1269 hypothetical protein YP_004694416.1 PFAM: YkuD domain; Peptidoglycan binding-like; KEGG: nit:NAL212_1270 ErfK/YbiS/YcfS/YnhG family protein YP_004694417.1 PFAM: Peptidase M18, aminopeptidase I; KEGG: neu:NE1533 aminopeptidase 2 YP_004694418.1 KEGG: fjo:Fjoh_3586 hypothetical protein YP_004694419.1 PFAM: Transposase, IS4-like; KEGG: nit:NAL212_2951 transposase IS4 family protein YP_004694420.1 PFAM: Haemolysin-type calcium-binding region; KEGG: nit:NAL212_1700 hypothetical protein YP_004694421.1 KEGG: nit:NAL212_1699 Sel1 domain-containing protein repeat-containing protein; PFAM: Sel1-like; SMART: Sel1-like YP_004694422.1 PFAM: Phage Tail Collar; KEGG: nit:NAL212_1698 tail collar domain-containing protein YP_004694423.1 KEGG: nit:NAL212_1697 hypothetical protein YP_004694424.1 PFAM: GTP-binding protein, HSR1-related; KEGG: nit:NAL212_1696 GTP-binding protein HSR1-like protein YP_004694425.1 KEGG: nit:NAL212_1694 hypothetical protein YP_004694426.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: nit:NAL212_1693 extracellular solute-binding protein family 1 YP_004694427.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: nit:NAL212_1692 ABC-type transporter, integral membrane subunit YP_004694428.1 KEGG: nit:NAL212_1691 Fe(3+)-transporting ATPase; PFAM: ABC transporter-like; Transport-associated OB, type 2; SMART: ATPase, AAA+ type, core YP_004694429.1 KEGG: nit:NAL212_1690 thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain YP_004694430.1 TIGRFAM: Transcription termination factor Rho; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; Rho termination factor, RNA-binding; Rho termination factor, N-terminal; KEGG: nit:NAL212_1689 transcription termination factor Rho; SMART: Cold shock protein; ATPase, AAA+ type, core YP_004694431.1 TIGRFAM: Ribosomal protein L31; HAMAP: 50S ribosomal protein L31; KEGG: nmu:Nmul_A2086 50S ribosomal protein L31; PFAM: Ribosomal protein L31 YP_004694432.1 PFAM: Cupin 2, conserved barrel; KEGG: nit:NAL212_1299 cupin 2 barrel domain-containing protein YP_004694433.1 PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding; KEGG: nit:NAL212_1252 mannitol dehydrogenase YP_004694434.1 KEGG: afe:Lferr_1426 integrase catalytic subunit; manually curated; PFAM: Integrase, catalytic core YP_004694435.1 PFAM: Transposase IS3/IS911; KEGG: net:Neut_2500 transposase IS3/IS911 YP_004694436.1 KEGG: nit:NAL212_1301 polysaccharide export protein EpsE; TIGRFAM: Polysaccharide export EpsE; PFAM: Polysaccharide export protein; Soluble ligand binding domain YP_004694437.1 KEGG: nit:NAL212_1302 chain length determinant protein EpsF; TIGRFAM: Chain length determinant protein EpsF; PFAM: Lipopolysaccharide biosynthesis YP_004694438.1 TIGRFAM: Tyrosine-protein kinase, chain length determinant protein EpsG; Exopolysaccharide synthesis protein; KEGG: nit:NAL212_1303 chain length determinant protein tyrosine kinase EpsG YP_004694439.1 KEGG: nit:NAL212_1304 exosortase 2; TIGRFAM: Exosortase 2; Exosortase, EpsH; PFAM: Exosortase EpsH-related YP_004694440.1 TIGRFAM: Methanolan biosynthesis EpsI; KEGG: nit:NAL212_1306 EpsI family protein YP_004694441.1 PFAM: Methyltransferase type 11; KEGG: nph:NP1930A sugar metabolism cluster protein (quinone/porphyrin-methyltransferase) YP_004694442.1 KEGG: nit:NAL212_1307 hypothetical protein YP_004694444.1 PFAM: Sulfotransferase; KEGG: nit:NAL212_1309 sulfotransferase YP_004694445.1 PFAM: Polysaccharide deacetylase; KEGG: bmr:BMI_I326 polysaccharide deacetylase YP_004694446.1 PFAM: Sulfotransferase; KEGG: sun:SUN_1532 sulfotransferase YP_004694447.1 KEGG: cph:Cpha266_2339 transposase, IS4 family protein; manually curated; PFAM: Transposase, IS4-like YP_004694448.1 PFAM: Methyltransferase type 11; KEGG: nhl:Nhal_3317 hypothetical protein YP_004694449.1 PFAM: Transposase, IS4-like; KEGG: nit:NAL212_2951 transposase IS4 family protein YP_004694450.1 PFAM: Transposase, IS4-like; KEGG: afe:Lferr_1749 hypothetical protein YP_004694451.1 KEGG: nit:NAL212_0064 hypothetical protein YP_004694452.1 KEGG: nit:NAL212_0063 IS66 Orf2 family protein; manually curated; PFAM: Transposase (), IS66 Orf2 like YP_004694453.1 KEGG: nit:NAL212_0062 transposase IS66; manually curated; PFAM: Transposase, IS66 YP_004694454.1 KEGG: afe:Lferr_0146 hypothetical protein YP_004694455.1 KEGG: afe:Lferr_0145 transposase YP_004694456.1 KEGG: nit:NAL212_3145 IS5 family transposase YP_004694457.1 PFAM: Transposase IS200-like; KEGG: eba:ebA563 transposition helper protein YP_004694458.1 KEGG: nit:NAL212_2625 hypothetical protein YP_004694459.1 PFAM: Transposase IS3/IS911; KEGG: nit:NAL212_0153 transposase IS3/IS911 family protein YP_004694460.1 manually curated; TIGRFAM: Glycosyl transferase WecB/TagA/CpsF; KEGG: nit:NAL212_1317 glycosyl transferase, WecB/TagA/CpsF family; PFAM: Glycosyl transferase WecB/TagA/CpsF YP_004694461.1 KEGG: tbd:Tbd_1785 hypothetical protein YP_004694462.1 PFAM: Glycosyl transferase, group 1; KEGG: nit:NAL212_1313 glycosyl transferase group 1 YP_004694464.1 KEGG: lch:Lcho_0632 Na-Ca exchanger/integrin-beta4; PFAM: Ig; ASPIC/UnbV; Haemolysin-type calcium-binding region; SMART: Dystroglycan-type cadherin-like YP_004694465.1 TIGRFAM: Glycine cleavage system T protein; HAMAP: Aminomethyltransferase; KEGG: nit:NAL212_1914 aminomethyltransferase; PFAM: Glycine cleavage T-protein, N-terminal; Glycine cleavage T-protein, C-terminal barrel YP_004694466.1 TIGRFAM: Glycine cleavage H-protein, subgroup; HAMAP: Glycine cleavage H-protein; KEGG: nit:NAL212_1913 glycine cleavage system H protein; PFAM: Glycine cleavage H-protein YP_004694467.1 KEGG: nit:NAL212_1912 glycine dehydrogenase (decarboxylating); HAMAP: glycine dehydrogenase [decarboxylating] subunit 1; PFAM: Glycine cleavage system P-protein, N-terminal YP_004694468.1 KEGG: nit:NAL212_1911 redoxin domain-containing protein; HAMAP: thiol peroxidase; PFAM: Redoxin YP_004694469.1 KEGG: nit:NAL212_1910 glycine cleavage system P-protein; HAMAP: glycine dehydrogenase [decarboxylating] subunit 2; PFAM: Aromatic amino acid beta-eliminating lyase/threonine aldolase YP_004694470.1 PFAM: Carbohydrate/purine kinase; KEGG: nit:NAL212_1909 adenosine kinase YP_004694471.1 KEGG: ctt:CtCNB1_2565 probable mannitol operon repressor YP_004694472.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: nit:NAL212_0961 endonuclease/exonuclease/phosphatase YP_004694473.1 KEGG: nit:NAL212_2279 hypothetical protein YP_004694474.1 KEGG: nit:NAL212_2278 hypothetical protein YP_004694475.1 KEGG: nit:NAL212_2819 hypothetical protein YP_004694476.1 KEGG: nit:NAL212_2606 methane monooxygenase/ammonia monooxygenase, subunit C; TIGRFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit C; PFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit C YP_004694477.1 KEGG: nit:NAL212_2815 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal YP_004694478.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold; PAS fold-4; KEGG: nit:NAL212_2814 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; PAC motif YP_004694479.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; PAS fold-3; PAS fold-4; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; KEGG: nhl:Nhal_2031 PAS sensor protein; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; PAC motif; Signal transduction response regulator, receiver region YP_004694480.1 KEGG: nit:NAL212_2280 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal YP_004694481.1 TIGRFAM: PAS; PFAM: PAS fold-3; PAS fold; ATP-binding region, ATPase-like; KEGG: meh:M301_1662 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region, ATPase-like; PAS; PAC motif YP_004694483.1 PFAM: Transposase, IS4-like; KEGG: tgr:Tgr7_1308 ISRSO18-transposase YP_004694484.1 SMART: HTH transcriptional regulator, Crp; KEGG: bxe:Bxe_C0542 Crp/FNR family transcriptional regulator YP_004694485.1 KEGG: afe:Lferr_1426 integrase catalytic subunit; manually curated; PFAM: Integrase, catalytic core YP_004694486.1 PFAM: Transposase IS3/IS911; KEGG: net:Neut_2500 transposase IS3/IS911 YP_004694487.1 KEGG: nit:NAL212_1594 hypothetical protein YP_004694488.1 KEGG: nit:NAL212_1593 hypothetical protein YP_004694489.1 KEGG: nit:NAL212_1949 hypothetical protein YP_004694490.1 KEGG: pna:Pnap_0133 DNA polymerase beta subunit YP_004694491.1 PFAM: Protein of unknown function DUF86; KEGG: pna:Pnap_0134 hypothetical protein YP_004694492.1 KEGG: nwa:Nwat_2452 hypothetical protein YP_004694493.1 KEGG: nit:NAL212_0869 von Willebrand factor type A; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A YP_004694494.1 KEGG: nit:NAL212_0870 nitric oxide reductase NorQ protein YP_004694495.1 PFAM: Ribulose bisphosphate carboxylase, small chain; KEGG: nit:NAL212_0871 ribulose-bisphosphate carboxylase YP_004694496.1 KEGG: nit:NAL212_0872 ribulose-bisphosphate carboxylase; HAMAP: Ribulose bisphosphate carboxylase large chain; PFAM: Ribulose bisphosphate carboxylase, large subunit, C-terminal; Ribulose bisphosphate carboxylase, large subunit, N-terminal YP_004694497.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: nit:NAL212_0873 transcriptional regulator, LysR family YP_004694498.1 KEGG: nit:NAL212_0874 hypothetical protein YP_004694499.1 KEGG: nit:NAL212_0875 hypothetical protein YP_004694500.1 SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: Ribosomal protein S12 methylthiotransferase RimO; Methylthiotransferase; KEGG: nit:NAL212_0876 MiaB-like tRNA modifying enzyme YliG; HAMAP: Ribosomal protein S12 methylthiotransferase RimO; PFAM: Methylthiotransferase, N-terminal; Radical SAM YP_004694501.1 KEGG: nit:NAL212_2318 PEP motif anchor domain-containing protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_004694502.1 PFAM: Transposase, IS4-like; KEGG: tgr:Tgr7_1308 ISRSO18-transposase YP_004694503.1 KEGG: sdn:Sden_2935 isoprenylcysteine carboxyl methyltransferase YP_004694504.1 KEGG: nit:NAL212_1684 lysophosphatidic acid receptor 2-like protein YP_004694505.1 KEGG: nit:NAL212_0795 Na+/H+ antiporter NhaC; TIGRFAM: Na+/H+ antiporter NhaC; PFAM: Na+/H+ antiporter NhaC-like YP_004694506.1 PFAM: (Uracil-5)-methyltransferase; KEGG: nit:NAL212_0793 (uracil-5)-methyltransferase YP_004694507.1 TIGRFAM: ABC transporter, haem export, CcmA; PFAM: ABC transporter-like; KEGG: nit:NAL212_1557 heme exporter protein CcmA; SMART: ATPase, AAA+ type, core YP_004694508.1 KEGG: nit:NAL212_1558 heme exporter protein CcmB; TIGRFAM: Cytochrome c-type biogenesis protein CcmB; PFAM: Cytochrome c-type biogenesis protein CcmB YP_004694509.1 KEGG: nit:NAL212_1559 heme exporter protein CcmC; TIGRFAM: Cytochrome c-type biogenesis protein CcmC; PFAM: Cytochrome c assembly protein YP_004694510.1 TIGRFAM: Haem exporter protein D (CcmD); KEGG: nit:NAL212_1560 heme exporter protein CcmD YP_004694511.1 KEGG: nit:NAL212_1561 CcmE/CycJ protein; HAMAP: CcmE/CycJ protein; PFAM: CcmE/CycJ protein YP_004694512.1 KEGG: nit:NAL212_1562 cytochrome c-type biogenesis protein CcmF; TIGRFAM: Cytochrome c-type biogenesis protein CcmF; PFAM: Cytochrome c assembly protein YP_004694513.1 KEGG: nit:NAL212_1563 periplasmic protein thiol/disulfide oxidoreductase DsbE; TIGRFAM: Periplasmic protein thiol:disulphide oxidoreductase DsbE; PFAM: Redoxin YP_004694514.1 PFAM: Cytochrome C biogenesis protein CcmH; KEGG: nit:NAL212_1564 cytochrome c biogenesis protein YP_004694515.1 TIGRFAM: Cytochrome c-type biogenesis protein CcmI; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; KEGG: nit:NAL212_1565 cytochrome c-type biogenesis protein CcmI; SMART: Tetratricopeptide repeat YP_004694516.1 PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: nit:NAL212_1566 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_004694517.1 PFAM: Transposase IS3/IS911; KEGG: nit:NAL212_0153 transposase IS3/IS911 family protein YP_004694518.1 KEGG: afe:Lferr_0146 hypothetical protein YP_004694519.1 KEGG: afe:Lferr_0145 transposase YP_004694520.1 KEGG: dia:Dtpsy_2525 isxo7 transposase YP_004694521.1 KEGG: nit:NAL212_1232 two component transcriptional regulator, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver region; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver region YP_004694522.1 KEGG: nit:NAL212_1362 dynamin family protein YP_004694523.1 PFAM: Protein of unknown function DUF502; KEGG: eba:ebA5013 hypothetical protein YP_004694524.1 KEGG: nit:NAL212_1364 folate-binding protein YgfZ; TIGRFAM: Folate-binding, YgfZ; PFAM: Glycine cleavage T-protein, N-terminal YP_004694525.1 KEGG: nit:NAL212_1365 hypothetical protein YP_004694527.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS fold; KEGG: dar:Daro_1362 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAC motif YP_004694528.1 KEGG: nmu:Nmul_A2728 phosphatase-like; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial; Protein of unknown function DUF839, bacterial YP_004694529.1 KEGG: nit:NAL212_1366 hypothetical protein YP_004694530.1 PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; KEGG: amd:AMED_5743 acyl-CoA dehydrogenase YP_004694531.1 KEGG: cai:Caci_0551 hypothetical protein YP_004694532.1 KEGG: dac:Daci_4508 hypothetical protein YP_004694533.1 KEGG: nit:NAL212_1367 hypothetical protein YP_004694534.1 KEGG: nit:NAL212_1368 hypothetical protein YP_004694535.1 KEGG: nit:NAL212_2278 hypothetical protein YP_004694536.1 KEGG: nit:NAL212_2279 hypothetical protein YP_004694537.1 PFAM: Phosphoribulokinase/uridine kinase; KEGG: nit:NAL212_1369 phosphoribulokinase YP_004694538.1 PFAM: DNA helicase, UvrD/REP type; KEGG: nit:NAL212_1370 UvrD/REP helicase YP_004694539.1 KEGG: gme:Gmet_0833 alpha amylase, catalytic region; PFAM: Glycosyl hydrolase, family 13, catalytic region; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region YP_004694540.1 PFAM: Ribonuclease T2; KEGG: mca:MCA1293 ribonuclease T2 family protein YP_004694541.1 KEGG: sdn:Sden_2175 hypothetical protein YP_004694542.1 KEGG: app:CAP2UW1_2764 peptidase C1A papain; PFAM: Peptidase C1A, papain C-terminal; SMART: Peptidase C1A, papain C-terminal YP_004694543.1 KEGG: nit:NAL212_1538 hypothetical protein YP_004694544.1 KEGG: nit:NAL212_1089 hypothetical protein YP_004694545.1 TIGRFAM: Homoserine kinase ThrB; HAMAP: Homoserine kinase; KEGG: nit:NAL212_1090 homoserine kinase; PFAM: Aminoglycoside phosphotransferase YP_004694546.1 KEGG: nit:NAL212_1091 hypothetical protein YP_004694547.1 KEGG: nit:NAL212_1092 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP00730; PFAM: Conserved hypothetical protein CHP00730 YP_004694548.1 TIGRFAM: DNA polymerase 1; PFAM: DNA-directed DNA polymerase, family A, palm domain; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; 3'-5' exonuclease; KEGG: nit:NAL212_1093 DNA polymerase I; SMART: DNA-directed DNA polymerase, family A, palm domain; 5'-3' exonuclease, N-terminal; Helix-hairpin-helix motif, class 2; 3'-5' exonuclease YP_004694549.1 KEGG: nit:NAL212_1094 ribonuclease, Rne/Rng family; TIGRFAM: Ribonuclease E/G; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; Ribosomal protein S1, RNA binding domain YP_004694550.1 TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: nit:NAL212_1095 pseudouridine synthase, RluA family; SMART: RNA-binding S4 YP_004694551.1 KEGG: nit:NAL212_1096 arylesterase; manually curated; PFAM: Lipase, GDSL YP_004694552.1 KEGG: nit:NAL212_1097 phosphonate-transporting ATPase; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004694553.1 PFAM: Protein of unknown function DUF214, permase predicted; KEGG: nit:NAL212_1098 hypothetical protein YP_004694554.1 TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: HemN, C-terminal; Radical SAM; KEGG: nit:NAL212_1099 oxygen-independent coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB YP_004694555.1 PFAM: Formate/nitrite transporter; KEGG: nit:NAL212_1100 formate/nitrite transporter YP_004694556.1 PFAM: ATP-binding region, ATPase-like; KEGG: rpe:RPE_2484 ATPase domain-containing protein YP_004694557.1 KEGG: rpe:RPE_2484 ATPase domain-containing protein YP_004694558.1 KEGG: nit:NAL212_3082 PEP motif anchor domain-containing protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_004694560.1 KEGG: bja:blr0248 hypothetical protein YP_004694561.1 PFAM: Amidohydrolase 1; KEGG: fri:FraEuI1c_6392 amidohydrolase YP_004694562.1 KEGG: nit:NAL212_1102 hypothetical protein YP_004694563.1 KEGG: sus:Acid_1970 hypothetical protein YP_004694564.1 KEGG: nit:NAL212_2699 hypothetical protein YP_004694567.1 KEGG: nit:NAL212_1903 hypothetical protein YP_004694568.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: bba:Bd1031 phospholipase/carboxylesterase YP_004694569.1 KEGG: nde:NIDE4188 hypothetical protein YP_004694570.1 KEGG: lic:LIC12227 hypothetical protein YP_004694571.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: nit:NAL212_1704 alpha/beta hydrolase fold protein YP_004694572.1 KEGG: nit:NAL212_1705 hypothetical protein YP_004694573.1 KEGG: cts:Ctha_1456 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; SMART: Metal-dependent phosphohydrolase, HD region YP_004694574.1 KEGG: nit:NAL212_2324 hypothetical protein YP_004694575.1 KEGG: nit:NAL212_2637 hypothetical protein YP_004694576.1 PFAM: Transposase, IS4-like; KEGG: xbo:XBJ1_1885 transposase YP_004694577.1 PFAM: Transposase IS3/IS911; KEGG: net:Neut_2500 transposase IS3/IS911 YP_004694578.1 KEGG: afe:Lferr_1426 integrase catalytic subunit; manually curated; PFAM: Integrase, catalytic core YP_004694580.1 TIGRFAM: Aconitase/iron regulatory protein 2; KEGG: nit:NAL212_2041 aconitate hydratase 1; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel YP_004694581.1 KEGG: nit:NAL212_1473 hypothetical protein YP_004694582.1 KEGG: nit:NAL212_0495 spermine synthase YP_004694583.1 KEGG: tmz:Tmz1t_2249 NADH ubiquinone oxidoreductase 20 kDa subunit YP_004694584.1 PFAM: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; Ferredoxin; KEGG: mca:MCA2725 NAD-reducing hydrogenase, gamma subunit YP_004694585.1 KEGG: gca:Galf_1581 respiratory-chain NADH dehydrogenase domain 51 kDa subunit; manually curated; PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; NADH:ubiquinone oxidoreductase, 24kDa subunit; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding YP_004694586.1 KEGG: lch:Lcho_2325 hypothetical protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_004694587.1 PFAM: Protein of unknown function DUF1614; KEGG: nhl:Nhal_3859 protein of unknown function DUF1614 YP_004694588.1 KEGG: gbm:Gbem_0768 hypothetical protein YP_004694589.1 KEGG: app:CAP2UW1_0348 hypothetical protein YP_004694592.1 KEGG: ctt:CtCNB1_2565 probable mannitol operon repressor YP_004694593.1 manually curated; PFAM: Peptidase M28; PDZ/DHR/GLGF; KEGG: nit:NAL212_2064 peptidase M28; SMART: PDZ/DHR/GLGF YP_004694594.1 manually curated YP_004694595.1 KEGG: dia:Dtpsy_2525 isxo7 transposase YP_004694596.1 KEGG: noc:Noc_1846 hypothetical protein YP_004694597.1 PFAM: WD40-like Beta Propeller; KEGG: nit:NAL212_2061 WD40-like beta propeller containing protein YP_004694598.1 KEGG: nit:NAL212_2071 hypothetical protein YP_004694599.1 PFAM: Haemolysin-type calcium-binding region; KEGG: nit:NAL212_2070 hemolysin-type calcium-binding region YP_004694600.1 KEGG: nit:NAL212_2060 hypothetical protein YP_004694601.1 KEGG: nit:NAL212_2059 hypothetical protein YP_004694602.1 TIGRFAM: IMP dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; Cystathionine beta-synthase, core; KEGG: nit:NAL212_2058 inosine-5'-monophosphate dehydrogenase; SMART: Cystathionine beta-synthase, core YP_004694603.1 TIGRFAM: GMP synthase, C-terminal; GMP synthase, N-terminal; HAMAP: GMP synthase [glutamine-hydrolyzing]; KEGG: nit:NAL212_2057 GMP synthase, large subunit; PFAM: GMP synthase, C-terminal; Glutamine amidotransferase class-I, C-terminal; tRNA methyl transferase-like YP_004694604.1 PFAM: Integrase, catalytic core, phage; KEGG: ajs:Ajs_2546 phage integrase YP_004694605.1 PFAM: Prophage CP4-57 regulatory; KEGG: maq:Maqu_1725 phage transcriptional regulator, AlpA YP_004694607.1 KEGG: xau:Xaut_3599 hypothetical protein YP_004694612.1 KEGG: afr:AFE_1128 hypothetical protein YP_004694613.1 KEGG: nmu:Nmul_A2227 single-strand binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding YP_004694615.1 KEGG: pap:PSPA7_2371 hypothetical protein YP_004694617.1 KEGG: hypothetical protein YP_004694618.1 KEGG: pst:PSPTO_4056 hypothetical protein YP_004694619.1 KEGG: sml:Smlt1913 hypothetical protein YP_004694621.1 KEGG: bpt:Bpet0950 RecF protein YP_004694623.1 PFAM: exonuclease, RdgC; KEGG: bph:Bphy_4738 recombination associated protein YP_004694625.1 KEGG: bgl:bglu_1g15310 hypothetical protein YP_004694626.1 manually curated; KEGG: bgl:bglu_1g15320 hypothetical protein YP_004694630.1 PFAM: Heat shock protein DnaJ, N-terminal YP_004694631.1 KEGG: mep:MPQ_2006 hypothetical protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_004694632.1 KEGG: net:Neut_1484 phage repressor YP_004694633.1 manually curated; KEGG: net:Neut_1483 hypothetical protein YP_004694634.1 KEGG: axy:AXYL_02049 hypothetical protein YP_004694635.1 KEGG: rpf:Rpic12D_3448 hypothetical protein YP_004694636.1 KEGG: lhk:LHK_01787 hypothetical protein YP_004694640.1 PFAM: DNA methylase N-4/N-6; KEGG: seu:SEQ_0158 phage DNA methylase YP_004694643.1 PFAM: Phage antirepressor protein; Phage regulatory protein, Rha-like; KEGG: btr:Btr_0527 hypothetical protein YP_004694647.1 KEGG: ect:ECIAI39_2692 hypothetical protein YP_004694648.1 SMART: Helix-turn-helix type 3; KEGG: ajs:Ajs_0932 XRE family transcriptional regulator YP_004694649.1 KEGG: ajs:Ajs_0939 hypothetical protein YP_004694650.1 KEGG: bvi:Bcep1808_7700 hypothetical protein YP_004694651.1 PFAM: Phosphopantetheine-binding; KEGG: aae:aq_1717a acyl carrier protein YP_004694652.1 PFAM: DeoxyUTP pyrophosphatase domain; KEGG: tkm:TK90_2717 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut YP_004694653.1 KEGG: dak:DaAHT2_2600 hypothetical protein YP_004694654.1 PFAM: Phage Gp37Gp68; KEGG: rpf:Rpic12D_2516 Gp37Gp68 family protein YP_004694655.1 KEGG: rru:Rru_A0637 hypothetical protein YP_004694657.1 KEGG: bgl:bglu_1g15190 hypothetical protein YP_004694658.1 KEGG: slt:Slit_0211 hypothetical protein YP_004694659.1 PFAM: Mor transcription activator; KEGG: nit:NAL212_3027 Mor transcription activator domain-containing protein YP_004694660.1 KEGG: dar:Daro_1917 hypothetical protein YP_004694662.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: bvi:Bcep1808_7745 lytic transglycosylase, catalytic YP_004694663.1 KEGG: ajs:Ajs_0938 hypothetical protein YP_004694664.1 KEGG: bvi:Bcep1808_7747 hypothetical protein YP_004694665.1 KEGG: bvi:Bcep1808_7774 hypothetical protein YP_004694666.1 KEGG: bvi:Bcep1808_7773 hypothetical protein YP_004694668.1 KEGG: bvi:Bcep1808_7772 hypothetical protein YP_004694669.1 KEGG: bvi:Bcep1808_7767 hypothetical protein YP_004694670.1 KEGG: ajs:Ajs_0933 hypothetical protein YP_004694671.1 KEGG: bvi:Bcep1808_7765 hypothetical protein YP_004694672.1 KEGG: bvi:Bcep1808_7737 hypothetical protein YP_004694673.1 KEGG: uma:UM05181.1 hypothetical protein YP_004694674.1 KEGG: bvi:Bcep1808_7735 hypothetical protein YP_004694675.1 KEGG: bvi:Bcep1808_7734 hypothetical protein YP_004694676.1 KEGG: ajs:Ajs_0937 hypothetical protein YP_004694677.1 KEGG: bvi:Bcep1808_7732 hypothetical protein YP_004694680.1 PFAM: Peptidase M15A, C-terminal; KEGG: ppw:PputW619_1627 peptidase M15A YP_004694683.1 KEGG: cai:Caci_6403 Ig family protein YP_004694686.1 KEGG: lic:LIC10163 hypothetical protein YP_004694687.1 KEGG: bvi:Bcep1808_7743 hypothetical protein YP_004694688.1 KEGG: fri:FraEuI1c_5846 polysaccharide deacetylase YP_004694689.1 KEGG: bvi:Bcep1808_7742 hypothetical protein YP_004694690.1 KEGG: bvi:Bcep1808_7740 hypothetical protein YP_004694691.1 KEGG: bvi:Bcep1808_7739 hypothetical protein YP_004694692.1 KEGG: bvi:Bcep1808_7738 hypothetical protein YP_004694693.1 KEGG: vok:COSY_0067 nuclease; PFAM: Staphylococcal nuclease (SNase-like); SMART: Staphylococcal nuclease (SNase-like) YP_004694694.1 KEGG: bvi:Bcep1808_7755 hypothetical protein YP_004694695.1 KEGG: rcp:RCAP_rcc00984 hypothetical protein YP_004694696.1 KEGG: mxa:MXAN_4488 hypothetical protein YP_004694697.1 KEGG: afe:Lferr_0235 hypothetical protein YP_004694698.1 KEGG: tcx:Tcr_1420 hypothetical protein YP_004694699.1 PFAM: Uncharacterised protein family UPF0150; KEGG: axy:AXYL_04720 hypothetical protein YP_004694700.1 PFAM: YcfA-like; KEGG: bpe:BP0939 hypothetical protein YP_004694701.1 KEGG: bvi:Bcep1808_7753 SNF2-related protein; PFAM: DNA methylase, adenine-specific; SMART: DEAD-like helicase, N-terminal YP_004694702.1 KEGG: bvi:Bcep1808_7752 hypothetical protein YP_004694703.1 KEGG: bac:BamMC406_3185 hypothetical protein YP_004694704.1 KEGG: nit:NAL212_1769 hypothetical protein YP_004694705.1 KEGG: bvi:Bcep1808_7666 hypothetical protein YP_004694706.1 KEGG: bvi:Bcep1808_7665 hypothetical protein YP_004694707.1 KEGG: bvi:Bcep1808_7775 hypothetical protein YP_004694708.1 KEGG: pct:PC1_2656 tail fiber repeat 2 protein YP_004694710.1 KEGG: sit:TM1040_1287 secreted serine protease YP_004694712.1 KEGG: sit:TM1040_1286 hypothetical protein YP_004694716.1 KEGG: nit:NAL212_2626 hypothetical protein YP_004694717.1 PFAM: Integrase, catalytic core, phage; KEGG: nit:NAL212_2056 integrase YP_004694718.1 KEGG: aba:Acid345_3092 hypothetical protein YP_004694721.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: Lysophospholipase L2 YP_004694722.1 PFAM: Resolvase, N-terminal; Resolvase, helix-turn-helix region; KEGG: nwa:Nwat_2435 resolvase domain-containing protein YP_004694723.1 KEGG: ecd:ECDH10B_1362 hypothetical protein YP_004694726.1 TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial; KEGG: meh:M301_0053 protein of unknown function DUF1555 YP_004694727.1 KEGG: nit:NAL212_2045 hypothetical protein YP_004694728.1 PFAM: Prophage CP4-57 regulatory; KEGG: nit:NAL212_2044 phage transcriptional regulator, AlpA YP_004694729.1 KEGG: nit:NAL212_2043 hypothetical protein YP_004694732.1 KEGG: meh:M301_1818 transcriptional regulator, MerR family; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR YP_004694733.1 TIGRFAM: thiopurine S-methyltransferase, Se/Te detoxification family; HAMAP: Thiopurine S-methyltransferase; KEGG: nde:NIDE2804 thiopurine S-methyltransferase; PFAM: Thiopurine S-methyltransferase YP_004694734.1 PFAM: Protein of unknown function DUF81; KEGG: meh:M301_1819 protein of unknown function DUF81 YP_004694735.1 KEGG: nit:NAL212_1347 GTP-binding proten HflX; TIGRFAM: GTP-binding protein, HflX; PFAM: GTP-binding protein, HSR1-related YP_004694737.1 PFAM: FAD dependent oxidoreductase; KEGG: vap:Vapar_2011 FAD dependent oxidoreductase YP_004694738.1 KEGG: nmu:Nmul_A1700 homospermidine synthase YP_004694740.1 PFAM: Glycoside hydrolase, family 38, core; Glycosyl hydrolases 38, C-terminal; KEGG: kol:Kole_0478 glycoside hydrolase 38 YP_004694742.1 PFAM: Glycosyl transferase, group 1; KEGG: nhl:Nhal_0699 glycosyl transferase group 1 YP_004694743.1 KEGG: mmb:Mmol_1803 protein of unknown function DUF1555; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_004694744.1 KEGG: nit:NAL212_1338 PEP motif anchor domain-containing protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_004694745.1 PFAM: Type IV pilus assembly PilZ YP_004694746.1 KEGG: nit:NAL212_0717 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver region YP_004694747.1 PFAM: Permease YjgP/YjgQ, predicted; KEGG: nit:NAL212_2669 permease YjgP/YjgQ family protein YP_004694748.1 KEGG: nit:NAL212_2668 hypothetical protein YP_004694749.1 PFAM: Glycosyl transferase, group 1; KEGG: tra:Trad_0736 glycosyl transferase group 1 protein YP_004694750.1 PFAM: Glycosyl transferase, group 1; KEGG: tra:Trad_0736 glycosyl transferase group 1 protein YP_004694751.1 KEGG: avn:Avin_44230 ABC transporter protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004694752.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: apb:SAR116_1941 nucleotide sugar epimerase YP_004694753.1 KEGG: avn:Avin_27790 UDP-glucose 6-dehydrogenase; TIGRFAM: Nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal YP_004694754.1 KEGG: psa:PST_1428 lipoprotein YP_004694755.1 PFAM: Heat shock protein 70; KEGG: rfr:Rfer_0832 heat shock protein 70 YP_004694756.1 KEGG: nit:NAL212_1538 hypothetical protein YP_004694758.1 PFAM: Heat shock protein Hsp20; KEGG: nmu:Nmul_A1167 heat shock protein HSP20 YP_004694759.1 KEGG: app:CAP2UW1_2275 chaperonin Cpn10; HAMAP: Chaperonin Cpn10, subgroup; PFAM: Chaperonin Cpn10 YP_004694760.1 TIGRFAM: Chaperonin Cpn60; HAMAP: 60 kDa chaperonin; KEGG: azo:azo0974 chaperonin GroEL; PFAM: Chaperonin Cpn60/TCP-1 YP_004694761.1 KEGG: tbd:Tbd_1444 hypothetical protein YP_004694762.1 KEGG: nit:NAL212_2279 hypothetical protein YP_004694763.1 KEGG: nit:NAL212_2278 hypothetical protein YP_004694764.1 PFAM: Dopa 4,5-dioxygenase; KEGG: vha:VIBHAR_05556 4,5-dioxygenase YP_004694765.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nit:NAL212_2274 glyoxalase/bleomycin resistance protein/dioxygenase YP_004694766.1 PFAM: FAD dependent oxidoreductase; KEGG: neu:NE2199 flavin-containing monooxygenase (FMO) YP_004694767.1 KEGG: nit:NAL212_1825 hypothetical protein YP_004694769.1 KEGG: nit:NAL212_2068 lipoprotein YP_004694770.1 PFAM: NADPH-dependent FMN reductase; KEGG: nmu:Nmul_A1470 NADPH-dependent FMN reductase YP_004694771.1 PFAM: Acyltransferase 3; KEGG: sli:Slin_3508 acyltransferase 3 YP_004694772.1 KEGG: cvi:CV_1113 DNA topoisomerase IV subunit B; PFAM: DNA topoisomerase, type IIA, subunit B, region 2; ATP-binding region, ATPase-like; DNA topoisomerase, type IIA, subunit B, C-terminal; SMART: DNA topoisomerase, type IIA, subunit B or N-terminal; ATP-binding region, ATPase-like YP_004694773.1 TIGRFAM: DNA topoisomerase IV, subunit A, Gram-negative; PFAM: DNA topoisomerase, type IIA, subunit A or C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel; KEGG: tmz:Tmz1t_2931 DNA topoisomerase IV subunit A; SMART: DNA topoisomerase, type IIA, subunit A or C-terminal YP_004694774.1 KEGG: nit:NAL212_2369 hopanoid-associated sugar epimerase; TIGRFAM: Hopanoid-associated sugar epimerase; PFAM: NAD-dependent epimerase/dehydratase YP_004694775.1 PFAM: Squalene/phytoene synthase; KEGG: nit:NAL212_2368 squalene/phytoene synthase YP_004694776.1 KEGG: nit:NAL212_2367 diaminopimelate decarboxylase; TIGRFAM: Diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2 YP_004694777.1 KEGG: nit:NAL212_2366 hypothetical protein YP_004694778.1 PFAM: Protein of unknown function DUF330; KEGG: nit:NAL212_2365 hypothetical protein YP_004694779.1 PFAM: Mammalian cell entry related; KEGG: nit:NAL212_2364 mammalian cell entry related domain-containing protein YP_004694780.1 KEGG: nit:NAL212_2363 sulfate-transporting ATPase; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004694781.1 KEGG: nit:NAL212_2362 hypothetical protein; TIGRFAM: Protein of unknown function DUF140; PFAM: Protein of unknown function DUF140 YP_004694782.1 KEGG: nit:NAL212_2361 cell wall hydrolase/autolysin; PFAM: Cell wall hydrolase/autolysin, catalytic; SMART: Cell wall hydrolase/autolysin, catalytic YP_004694783.1 KEGG: nit:NAL212_2360 hypothetical protein; TIGRFAM: Uncharacterised protein family UPF0079, ATPase bacteria; PFAM: Uncharacterised protein family UPF0079, ATPase bacteria YP_004694784.1 KEGG: nit:NAL212_2359 iron-sulfur cluster binding protein; TIGRFAM: 4Fe-4S cluster binding; PFAM: Domain of unknown function DUF1730 YP_004694785.1 TIGRFAM: Phosphoribosylglycinamide formyltransferase 2; HAMAP: Phosphoribosylglycinamide formyltransferase 2; KEGG: nit:NAL212_2358 phosphoribosylglycinamide formyltransferase 2; PFAM: ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type YP_004694786.1 PFAM: Aldose 1-epimerase; KEGG: nit:NAL212_2357 aldose 1-epimerase YP_004694788.1 KEGG: nit:NAL212_0468 anion transporter; TIGRFAM: Sodium/sulphate symporter; PFAM: Sodium/sulphate symporter YP_004694789.1 KEGG: nit:NAL212_2353 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; SMART: N-acetylmuramoyl-L-alanine amidase, family 2 YP_004694790.1 TIGRFAM: Thymidylate kinase; HAMAP: Thymidylate kinase; KEGG: nit:NAL212_2352 thymidylate kinase; PFAM: Thymidylate kinase-like YP_004694791.1 TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: nit:NAL212_2351 DNA polymerase III, delta prime subunit YP_004694792.1 PFAM: Protein of unknown function DUF336; KEGG: nit:NAL212_2350 hypothetical protein YP_004694793.1 PFAM: Dienelactone hydrolase; KEGG: nit:NAL212_2349 dienelactone hydrolase YP_004694794.1 PFAM: Sulphatase-modifying factor; KEGG: app:CAP2UW1_2119 hypothetical protein YP_004694795.1 KEGG: tkm:TK90_1685 transposase YP_004694796.1 PFAM: Transposase, IS4-like; KEGG: afe:Lferr_1749 hypothetical protein YP_004694797.1 PFAM: Sulphatase-modifying factor; KEGG: app:CAP2UW1_3091 hypothetical protein YP_004694798.1 SMART: Toll-Interleukin receptor YP_004694799.1 KEGG: nde:NIDE1720 antidote of proteic killer gene system; TIGRFAM: Addiction module antidote protein, HigA; PFAM: Helix-turn-helix type 3 YP_004694800.1 PFAM: Plasmid maintenance system killer; KEGG: nde:NIDE1719 toxin of proteic killer gene system YP_004694801.1 PFAM: Alcohol dehydrogenase, iron-type; KEGG: nit:NAL212_2345 alcohol dehydrogenase YP_004694802.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: nit:NAL212_2344 antibiotic biosynthesis monooxygenase YP_004694803.1 PFAM: Transposase, IS4-like; KEGG: xbo:XBJ1_1885 transposase YP_004694804.1 KEGG: nmu:Nmul_A1193 transport-associated protein; PFAM: Transport-associated; SMART: Transport-associated and nodulation region, bacteria YP_004694805.1 PFAM: CsbD-like; KEGG: nmu:Nmul_A1602 CsbD-like YP_004694806.1 PFAM: Major facilitator superfamily MFS-1; KEGG: cyn:Cyan7425_4223 folate/biopterin transporter YP_004694807.1 TIGRFAM: RNA polymerase-binding, DksA; KEGG: nit:NAL212_1359 transcriptional regulator, TraR/DksA family YP_004694808.1 TIGRFAM: Polyribonucleotide nucleotidyltransferase; HAMAP: Polyribonucleotide nucleotidyltransferase; KEGG: nit:NAL212_1360 polyribonucleotide nucleotidyltransferase; PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; K Homology, type 1, subgroup; Ribosomal protein S1, RNA binding domain YP_004694809.1 KEGG: nit:NAL212_1361 30S ribosomal protein S15; TIGRFAM: Ribosomal protein S15, bacterial-type; PFAM: Ribosomal protein S15 YP_004694810.1 TIGRFAM: Phosphate binding protein; KEGG: nit:NAL212_2305 phosphate binding protein YP_004694811.1 PFAM: Phosphate-selective porin O/P; KEGG: nit:NAL212_2304 phosphate-selective porin O and P YP_004694812.1 KEGG: nit:NAL212_2606 methane monooxygenase/ammonia monooxygenase, subunit C; TIGRFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit C; PFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit C YP_004694813.1 KEGG: nit:NAL212_2302 hypothetical protein YP_004694814.1 PFAM: GCN5-related N-acetyltransferase; KEGG: nit:NAL212_2298 GCN5-like N-acetyltransferase YP_004694815.1 TIGRFAM: Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; KEGG: nit:NAL212_2297 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase YP_004694816.1 PFAM: Protein of unknown function DUF484; KEGG: nit:NAL212_2296 hypothetical protein YP_004694817.1 KEGG: nit:NAL212_2295 tyrosine recombinase XerC; HAMAP: Tyrosine recombinase xerC; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage YP_004694818.1 TIGRFAM: ATP-dependent protease HslVU, peptidase subunit; HAMAP: ATP-dependent protease hslV; KEGG: nit:NAL212_2294 ATP-dependent protease HslVU, peptidase subunit; PFAM: Proteasome, subunit alpha/beta YP_004694819.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Heat shock protein HslU; KEGG: nit:NAL212_2293 ATP-dependent hsl protease ATP-binding subunit HslU; HAMAP: ATP-dependent hsl protease ATP-binding subunit hslU; PFAM: ATPase associated with various cellular activities, AAA-2 YP_004694820.1 TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial; Laminin B type IV; KEGG: hbo:Hbor_38190 phosphodiesterase/alkaline phosphatase D; SMART: Laminin B YP_004694821.1 KEGG: nit:NAL212_2040 regulatory protein, FmdB family; TIGRFAM: Regulatory protein, FmdB, PFAM: Regulatory protein, FmdB YP_004694822.1 KEGG: nit:NAL212_2039 aspartyl-tRNA synthetase; TIGRFAM: Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; GAD domain YP_004694823.1 PFAM: NUDIX hydrolase domain; KEGG: nit:NAL212_2038 NUDIX hydrolase YP_004694824.1 PFAM: Sulphate transporter; KEGG: nit:NAL212_0858 sulfate transporter YP_004694826.1 KEGG: din:Selin_1106 hypothetical protein YP_004694827.1 KEGG: nhl:Nhal_2893 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: NADH-quinone oxidoreductase, chain M; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase YP_004694828.1 KEGG: nhl:Nhal_2894 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: NADH-quinone oxidoreductase, chain M; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase YP_004694829.1 PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal; KEGG: nhl:Nhal_2895 NADH/ubiquinone/plastoquinone (complex I) YP_004694830.1 KEGG: mca:MCA0512 hypothetical protein; HAMAP: UPF0753 protein; PFAM: Protein of unknown function DUF2309 YP_004694831.1 KEGG: nhl:Nhal_2897 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: NADH-quinone oxidoreductase, chain M; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase YP_004694832.1 KEGG: dia:Dtpsy_2525 isxo7 transposase YP_004694834.1 PFAM: Transposase, IS4-like; KEGG: tgr:Tgr7_1308 ISRSO18-transposase YP_004694835.1 PFAM: SEFIR; KEGG: cyj:Cyan7822_0499 purine or other phosphorylase 1 YP_004694836.1 SMART: ATPase, AAA+ type, core; KEGG: ter:Tery_2060 ATPase-like protein YP_004694837.1 PFAM: Sulphatase-modifying factor; KEGG: gsu:GSU0897 hypothetical protein YP_004694838.1 PFAM: Sulphatase-modifying factor; KEGG: app:CAP2UW1_2883 hypothetical protein YP_004694839.1 KEGG: nit:NAL212_1780 hypothetical protein YP_004694840.1 PFAM: Regulator of K+ conductance, C-terminal; Divalent ion symporter; KEGG: nit:NAL212_1779 citrate transporter YP_004694841.1 PFAM: Ribonuclease T2; KEGG: nit:NAL212_0941 ribonuclease T2 YP_004694842.1 KEGG: pfo:Pfl01_3363 Epralysin. Metallo peptidase. MEROPS family M10B; PFAM: Peptidase M10A/M12B, matrixin/adamalysin; Haemolysin-type calcium-binding region; SMART: Peptidase, metallopeptidases YP_004694843.1 KEGG: neu:NE2218 hypothetical protein YP_004694844.1 KEGG: nit:NAL212_0896 cytochrome P460 YP_004694845.1 KEGG: nit:NAL212_2801 hydroxyacylglutathione hydrolase; TIGRFAM: Hydroxyacylglutathione hydrolase; HAMAP: Hydroxyacylglutathione hydrolase YP_004694846.1 PFAM: Methyltransferase type 11; KEGG: nit:NAL212_2800 methyltransferase type 11 YP_004694847.1 KEGG: nit:NAL212_2799 ribonuclease H; HAMAP: Ribonuclease H; PFAM: Ribonuclease H YP_004694848.1 TIGRFAM: DNA polymerase 3, epsilon subunit; DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T/DNA polymerase III; KEGG: nit:NAL212_2798 DNA polymerase III, epsilon subunit; SMART: Exonuclease YP_004694849.1 PFAM: Chemotaxis phosphatase, CheZ; KEGG: nit:NAL212_2371 chemotaxis phosphatase, CheZ YP_004694850.1 KEGG: nit:NAL212_2370 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004694851.1 TIGRFAM: Tetraacyldisaccharide 4'-kinase; HAMAP: Tetraacyldisaccharide 4'-kinase; KEGG: nit:NAL212_1514 tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide 4'-kinase YP_004694852.1 KEGG: nit:NAL212_1515 esterase/lipase/thioesterase YP_004694853.1 KEGG: neu:NE2353 molybdopterin/thiamine biosynthesis family protein; PFAM: UBA/THIF-type NAD/FAD binding fold; MoeZ/MoeB; Rhodanese-like; SMART: Rhodanese-like YP_004694854.1 KEGG: neu:NE2352 Mov34 family protein; PFAM: Mov34/MPN/PAD-1; SMART: Mov34/MPN/PAD-1 YP_004694855.1 PFAM: ThiamineS; KEGG: neu:NE2351 hypothetical protein YP_004694856.1 PFAM: CoA-transferase III; KEGG: neu:NE2350 L-carnitine dehydratase YP_004694857.1 PFAM: AMP-dependent synthetase/ligase; KEGG: neu:NE2349 AMP-dependent synthetase and ligase YP_004694858.1 PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central region; Acyl-CoA dehydrogenase, N-terminal; KEGG: neu:NE2348 acyl-CoA dehydrogenase YP_004694859.1 PFAM: Major facilitator superfamily MFS-1; KEGG: neu:NE2347 general substrate transporters YP_004694860.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: neu:NE2346 hydrolase YP_004694861.1 PFAM: Transposase, IS4-like; KEGG: xbo:XBJ1_1885 transposase YP_004694862.1 KEGG: neu:NE2345 hypothetical protein YP_004694863.1 PFAM: Glycosyl hydrolase, family 88; KEGG: nmu:Nmul_A0964 unsaturated glucuronyl hydrolase YP_004694864.1 PFAM: Amidohydrolase 1; KEGG: nmu:Nmul_A0963 amidohydrolase YP_004694865.1 KEGG: nit:NAL212_1278 hypothetical protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_004694866.1 PFAM: Di-haem cytochrome c peroxidase; KEGG: nit:NAL212_1277 di-heme cytochrome c peroxidase YP_004694867.1 KEGG: nmu:Nmul_A1190 hypothetical protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_004694868.1 PFAM: Amidohydrolase 1; KEGG: nit:NAL212_1813 amidohydrolase YP_004694869.1 KEGG: nit:NAL212_1516 hypothetical protein YP_004694870.1 PFAM: Radical SAM; KEGG: nit:NAL212_1517 radical SAM domain-containing protein YP_004694871.1 KEGG: nit:NAL212_1518 queuosine biosynthesis protein QueD; TIGRFAM: queuosine biosynthesis protein QueD; PFAM: 6-pyruvoyl tetrahydropterin synthase-related YP_004694872.1 KEGG: nit:NAL212_1519 hydrolase, TatD family; TIGRFAM: Deoxyribonuclease, TatD Mg-dependent, prokaryote; PFAM: Deoxyribonuclease, TatD-related YP_004694873.1 PFAM: Ankyrin repeat; KEGG: nit:NAL212_1520 ankyrin YP_004694874.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: nit:NAL212_1521 3-oxoacyl-(acyl-carrier-protein) reductase YP_004694875.1 KEGG: nit:NAL212_1522 alanine dehydrogenase; TIGRFAM: Alanine dehydrogenase/pyridine nucleotide transhydrogenase; PFAM: Alanine dehydrogenase/PNT, C-terminal; Alanine dehydrogenase/PNT, N-terminal YP_004694876.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: nit:NAL212_1337 signal transduction protein YP_004694877.1 TIGRFAM: Addiction module antidote protein, HigA; PFAM: Helix-turn-helix type 3; KEGG: tgr:Tgr7_1105 XRE family plasmid maintenance system antidote protein; SMART: Helix-turn-helix type 3 YP_004694878.1 PFAM: Plasmid maintenance system killer; KEGG: cyj:Cyan7822_2340 plasmid maintenance system killer YP_004694880.1 KEGG: nit:NAL212_2310 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP00255; PFAM: YicC-like, N-terminal; Domain of unknown function DUF1732 YP_004694881.1 KEGG: nit:NAL212_2309 hypothetical protein YP_004694882.1 TIGRFAM: Peptide chain release factor 3; Small GTP-binding protein; HAMAP: Peptide chain release factor 3; KEGG: nit:NAL212_2308 peptide chain release factor 3; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2 YP_004694883.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: nit:NAL212_2307 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal YP_004694884.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: nit:NAL212_2306 ABC-type transporter, integral membrane subunit YP_004694885.1 KEGG: nit:NAL212_1590 hemolysin-type calcium-binding region YP_004694886.1 KEGG: nit:NAL212_2071 hypothetical protein YP_004694887.1 KEGG: nit:NAL212_1924 hypothetical protein YP_004694888.1 PFAM: Glutathione peroxidase; KEGG: nit:NAL212_1923 glutathione peroxidase YP_004694889.1 PFAM: Phosphate-selective porin O/P; KEGG: nit:NAL212_1922 phosphate-selective porin O and P YP_004694890.1 PFAM: Protein of unknown function DUF214, permase predicted; KEGG: nit:NAL212_1921 hypothetical protein YP_004694892.1 KEGG: Extracellular ligand-binding receptor YP_004694893.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: nit:NAL212_0168 endonuclease/exonuclease/phosphatase YP_004694894.1 KEGG: nit:NAL212_1957 hypothetical protein YP_004694895.1 PFAM: Protein of unknown function DUF214, permase predicted; KEGG: nit:NAL212_1955 hypothetical protein YP_004694896.1 KEGG: nit:NAL212_1954 phosphonate-transporting ATPase; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004694897.1 KEGG: nit:NAL212_1953 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004694898.1 KEGG: nit:NAL212_1952 DNA mismatch repair protein MutS domain-containing protein; PFAM: DNA mismatch repair protein MutS, C-terminal; SMART: DNA mismatch repair protein MutS, C-terminal YP_004694899.1 KEGG: gpb:HDN1F_31430 hypothetical protein YP_004694900.1 KEGG: dat:HRM2_03850 ferric uptake regulation protein YP_004694901.1 TIGRFAM: Succinyl-CoA synthetase, beta subunit; HAMAP: Succinyl-CoA ligase [ADP-forming] subunit beta; KEGG: nit:NAL212_1323 succinyl-CoA synthetase, beta subunit; PFAM: ATP-grasp fold, succinyl-CoA synthetase-type; ATP-citrate lyase/succinyl-CoA ligase YP_004694902.1 KEGG: nit:NAL212_1322 succinyl-CoA synthetase, alpha subunit; TIGRFAM: Succinyl-CoA ligase, alpha subunit; PFAM: ATP-citrate lyase/succinyl-CoA ligase; CoA-binding YP_004694903.1 KEGG: nit:NAL212_1321 hypothetical protein YP_004694904.1 KEGG: nit:NAL212_1320 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; TIGRFAM: Peptidase S13, D-Ala-D-Ala carboxypeptidase C; PFAM: Peptidase S13, D-Ala-D-Ala carboxypeptidase C YP_004694905.1 PFAM: Cystathionine beta-synthase, core; KEGG: nit:NAL212_1319 CBS domain containing protein YP_004694906.1 KEGG: dia:Dtpsy_2525 isxo7 transposase YP_004694907.1 PFAM: Patatin; KEGG: sus:Acid_6439 hypothetical protein YP_004694908.1 KEGG: nit:NAL212_0544 anthranilate synthase component I; TIGRFAM: Anthranilate synthase component I; PFAM: Chorismate binding, C-terminal; Anthranilate synthase component I, N-terminal YP_004694909.1 KEGG: nit:NAL212_0545 phosphoglycolate phosphatase; TIGRFAM: 2-phosphoglycolate phosphatase, prokaryotic; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase YP_004694910.1 KEGG: nit:NAL212_0546 ribulose-phosphate 3-epimerase; TIGRFAM: Ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3-epimerase YP_004694911.1 KEGG: nit:NAL212_0549 ApaG domain-containing protein; HAMAP: Protein ApaG; PFAM: ApaG YP_004694912.1 PFAM: Tetrapyrrole methylase; KEGG: nit:NAL212_0550 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase YP_004694913.1 KEGG: nit:NAL212_0551 lactoylglutathione lyase; TIGRFAM: Glyoxalase I; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_004694914.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: nit:NAL212_0552 rubredoxin-type Fe(Cys)4 protein YP_004694915.1 PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: nit:NAL212_0553 phosphomethylpyrimidine kinase YP_004694916.1 TIGRFAM: Thiamine monophosphate synthase; HAMAP: Thiamine-phosphate pyrophosphorylase; KEGG: nit:NAL212_0554 thiamine-phosphate pyrophosphorylase; PFAM: Thiamine monophosphate synthase YP_004694917.1 TIGRFAM: Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase; HAMAP: Glutamate-1-semialdehyde 2,1-aminomutase; KEGG: nit:NAL212_0555 glutamate-1-semialdehyde-2,1-aminomutase; PFAM: Aminotransferase class-III YP_004694918.1 PFAM: Cytochrome c, class I; KEGG: nit:NAL212_0556 cytochrome c class I YP_004694919.1 KEGG: nit:NAL212_0557 sporulation domain-containing protein YP_004694920.1 KEGG: nit:NAL212_0558 methionine aminopeptidase, type I; TIGRFAM: Peptidase M24A, methionine aminopeptidase, subfamily 1; PFAM: Peptidase M24, structural domain YP_004694921.1 TIGRFAM: Ribonuclease phosphorolytic, bacterial-type; HAMAP: Ribonuclease phosphorolytic, bacterial-type; KEGG: nit:NAL212_0559 ribonuclease PH; PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2 YP_004694922.1 TIGRFAM: Ham1-like protein; HAMAP: Nucleoside-triphosphatase rdgB; KEGG: nit:NAL212_0560 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family; PFAM: Ham1-like protein YP_004694923.1 KEGG: nit:NAL212_0958 RNA recognition motif domain containing protein YP_004694926.1 manually curated; TIGRFAM: S-formylglutathione hydrolase; KEGG: nit:NAL212_0567 S-formylglutathione hydrolase; PFAM: esterase YP_004694927.1 KEGG: nit:NAL212_0568 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; TIGRFAM: Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like YP_004694928.1 KEGG: nit:NAL212_0569 protein tyrosine phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight YP_004694929.1 KEGG: nit:NAL212_1778 hypothetical protein YP_004694930.1 PFAM: YkuD domain; KEGG: nit:NAL212_0409 ErfK/YbiS/YcfS/YnhG family protein YP_004694931.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: nit:NAL212_0408 CMP/dCMP deaminase zinc-binding protein YP_004694932.1 KEGG: nit:NAL212_0407 protein-(glutamine-N5) methyltransferase, 50S ribosomal protein L3-specific; TIGRFAM: Ribosomal protein L3-specific, glutamine-N5-methyltransferase; Modification methylase HemK; PFAM: Methyltransferase small YP_004694933.1 KEGG: nit:NAL212_0566 hypothetical protein YP_004694934.1 KEGG: nit:NAL212_0565 hypothetical protein YP_004694935.1 KEGG: rcu:RCOM_0354920 hypothetical protein YP_004694936.1 TIGRFAM: Pseudouridine synthase, RsuA and RluB/E/F; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: nit:NAL212_1615 pseudouridine synthase Rsu; SMART: RNA-binding S4 YP_004694937.1 KEGG: nit:NAL212_1616 hemolysin-type calcium-binding region YP_004694938.1 TIGRFAM: Uncharacterised protein family UPF0133; HAMAP: Uncharacterised protein family UPF0133; KEGG: nit:NAL212_1617 hypothetical protein; PFAM: Uncharacterised protein family UPF0133 YP_004694939.1 TIGRFAM: DNA polymerase III, subunit gamma/ tau; PFAM: ATPase, AAA-type, core; KEGG: nit:NAL212_1618 DNA polymerase III, subunits gamma and tau; SMART: ATPase, AAA+ type, core YP_004694940.1 KEGG: nmu:Nmul_A1663 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; SMART: Metal-dependent phosphohydrolase, HD region YP_004694941.1 TIGRFAM: RecB family nuclease, TM0106, KEGG: nit:NAL212_1619 RecB family nuclease YP_004694942.1 KEGG: nit:NAL212_1620 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: Mannose-6-phosphate isomerase, type II, C-terminal; Nucleotidyl transferase YP_004694943.1 KEGG: nit:NAL212_0828 hypothetical protein YP_004694946.1 KEGG: nit:NAL212_1406 hypothetical protein YP_004694947.1 PFAM: DNA-repair protein, UmuC-like; KEGG: nit:NAL212_2528 DNA-directed DNA polymerase YP_004694948.1 PFAM: Aldehyde dehydrogenase; KEGG: nit:NAL212_2796 succinate-semialdehyde dehydrogenase (NAD(P)(+)) YP_004694949.1 PFAM: Sulphatase-modifying factor; KEGG: mms:mma_1908 hypothetical protein YP_004694950.1 PFAM: Chromate resistance exported protein; KEGG: pop:POPTR_946650 hypothetical protein YP_004694951.1 KEGG: dar:Daro_3555 chromate transporter; TIGRFAM: Chromate transporter; PFAM: Chromate transporter region YP_004694952.1 PFAM: Chromate resistance exported protein; KEGG: rfr:Rfer_2446 chromate resistance exported protein YP_004694953.1 PFAM: NADH:ubiquinone oxidoreductase intermediate-associated protein 30; KEGG: gca:Galf_1674 NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 YP_004694954.1 PFAM: Dak kinase; Dak phosphatase; KEGG: nit:NAL212_1378 glycerone kinase YP_004694955.1 PFAM: Metallophosphoesterase YP_004694956.1 KEGG: nit:NAL212_0934 glutamyl-tRNA synthetase; TIGRFAM: Glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain YP_004694957.1 KEGG: nit:NAL212_0935 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated; TIGRFAM: Acyl-CoA ligase (AMP-forming), exosortase system type 1 associated; PFAM: AMP-dependent synthetase/ligase YP_004694958.1 KEGG: nit:NAL212_0936 pyridoxal-dependent decarboxylase, exosortase system type 1 associated; TIGRFAM: Pyridoxal-dependent decarboxylase, exosortase system type 1 associated; PFAM: Orn/DAP/Arg decarboxylase 2 YP_004694959.1 TIGRFAM: PEP-CTERM/exosortase system-associated acyltransferase; KEGG: nit:NAL212_0937 PEP-Cterm/exosortase system-associated acyltransferase YP_004694960.1 KEGG: nit:NAL212_0938 hypothetical protein YP_004694961.1 KEGG: nit:NAL212_0939 hypothetical protein YP_004694962.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS fold; KEGG: nit:NAL212_0940 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS YP_004694963.1 PFAM: RNA-metabolising metallo-beta-lactamase; KEGG: nit:NAL212_1874 beta-Casp domain YP_004694964.1 KEGG: nit:NAL212_1873 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; TIGRFAM: Adenosylmethionine--8-amino-7-oxononanoate aminotransferase; PFAM: Aminotransferase class-III YP_004694965.1 KEGG: nit:NAL212_1872 hypothetical protein YP_004694966.1 KEGG: nit:NAL212_1279 adenylosuccinate lyase; TIGRFAM: Adenylosuccinate lyase; PFAM: Adenylosuccinate lyase C-terminal; Fumarate lyase YP_004694967.1 KEGG: nit:NAL212_1280 GrpE protein; HAMAP: GrpE nucleotide exchange factor; PFAM: GrpE nucleotide exchange factor YP_004694968.1 TIGRFAM: Chaperone DnaK; HAMAP: Chaperone DnaK; KEGG: nit:NAL212_1281 chaperone protein DnaK; PFAM: Heat shock protein 70 YP_004694969.1 SMART: Heat shock protein DnaJ, N-terminal; TIGRFAM: Chaperone DnaJ; KEGG: nit:NAL212_1282 chaperone protein DnaJ; HAMAP: Chaperone protein dnaJ; PFAM: Chaperone DnaJ, C-terminal; Heat shock protein DnaJ, cysteine-rich region; Heat shock protein DnaJ, N-terminal YP_004694970.1 PFAM: Transposase, IS4-like; KEGG: nit:NAL212_2951 transposase IS4 family protein YP_004694971.1 KEGG: afe:Lferr_0146 hypothetical protein YP_004694972.1 KEGG: afe:Lferr_0145 transposase YP_004694973.1 PFAM: Transposase IS3/IS911; KEGG: gca:Galf_0832 transposase IS3/IS911 family protein YP_004694974.1 PFAM: Transposase, IS116/IS110/IS902; Transposase, IS111A/IS1328/IS1533; KEGG: afr:AFE_3183 ISAfe1, transposase YP_004694976.1 PFAM: Transposase, IS4-like; KEGG: nit:NAL212_2951 transposase IS4 family protein YP_004694978.1 KEGG: nit:NAL212_1665 hypothetical protein YP_004694980.1 PFAM: Transposase, IS4-like; KEGG: nit:NAL212_2951 transposase IS4 family protein YP_004694981.1 KEGG: nit:NAL212_2316 magnesium and cobalt transport protein CorA; TIGRFAM: Magnesium/cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA-like YP_004694982.1 KEGG: nit:NAL212_2315 hypothetical protein YP_004694983.1 KEGG: nit:NAL212_2314 hypothetical protein YP_004694984.1 KEGG: nit:NAL212_1830 UTP-glucose-1-phosphate uridylyltransferase; TIGRFAM: UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal type; PFAM: Nucleotidyl transferase YP_004694985.1 KEGG: nit:NAL212_1831 UDP-glucose 4-epimerase; TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase YP_004694986.1 KEGG: nit:NAL212_1832 hypothetical protein YP_004694987.1 PFAM: Adenylylsulphate kinase, C-terminal; Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; TIGRFAM: Sulphate adenylyltransferase, large subunit; Adenylylsulphate kinase, C-terminal; HAMAP: Sulfate adenylyltransferase subunit 1; KEGG: nit:NAL212_1833 sulfate adenylyltransferase, large subunit YP_004694988.1 TIGRFAM: Sulphate adenylyltransferase, small subunit; HAMAP: Sulfate adenylyltransferase subunit 2; KEGG: nit:NAL212_1834 sulfate adenylyltransferase, small subunit; PFAM: Phosphoadenosine phosphosulphate reductase YP_004694989.1 KEGG: hoh:Hoch_1738 hypothetical protein YP_004694990.1 KEGG: nmu:Nmul_A1259 hypothetical protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_004694991.1 KEGG: nit:NAL212_0962 PEP motif anchor domain-containing protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_004694992.1 KEGG: nit:NAL212_1086 hypothetical protein; TIGRFAM: pyridoxal phosphate-dependent enzyme, YBL036C type; PFAM: Alanine racemase, N-terminal YP_004694993.1 KEGG: nit:NAL212_1085 hypothetical protein YP_004694994.1 TIGRFAM: Methionyl-tRNA synthetase, class Ia; Methionyl-tRNA synthetase, class Ia, beta subunit, C-terminal; HAMAP: Methionyl-tRNA synthetase; KEGG: nit:NAL212_1084 methionyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class I (M); tRNA-binding region YP_004694995.1 PFAM: ATPase-like, ParA/MinD; Protein of unknown function DUF59; KEGG: nit:NAL212_1083 ATPase-like, ParA/MinD YP_004694996.1 manually curated; TIGRFAM: Deoxycytidine triphosphate deaminase; KEGG: nit:NAL212_1082 deoxycytidine triphosphate deaminase; HAMAP: Deoxycytidine triphosphate deaminase YP_004694997.1 TIGRFAM: hypothetical protein; KEGG: nit:NAL212_1081 hypothetical protein YP_004694998.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: nit:NAL212_1080 ornithine decarboxylase YP_004694999.1 PFAM: Dihydrofolate reductase region; KEGG: nit:NAL212_1079 dihydrofolate reductase region YP_004695000.1 TIGRFAM: Thymidylate synthase, C-terminal; HAMAP: Thymidylate synthase; KEGG: nit:NAL212_1078 thymidylate synthase; PFAM: Thymidylate synthase, C-terminal YP_004695001.1 PFAM: Peptidase M17, leucyl aminopeptidase, C-terminal; KEGG: nit:NAL212_1077 peptidase M17 leucyl aminopeptidase domain-containing protein YP_004695002.1 KEGG: nit:NAL212_1076 lytic transglycosylase catalytic; PFAM: Lytic transglycosylase-like, catalytic; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup YP_004695003.1 TIGRFAM: Nitrile oxidoreductase, NADPH-dependent, QueF; HAMAP: Nitrile oxidoreductase, NADPH-dependent, QueF; KEGG: nit:NAL212_1075 7-cyano-7-deazaguanine reductase; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase YP_004695004.1 KEGG: nit:NAL212_1074 chromosome segregation protein SMC; TIGRFAM: Chromosome segregation protein SMC; PFAM: RecF/RecN/SMC protein, N-terminal; SMCs flexible hinge YP_004695005.1 SMART: ZipA, C-terminal FtsZ-binding region; KEGG: nit:NAL212_1073 ZipA FtsZ-binding region protein YP_004695006.1 PFAM: Iron sulphur domain-containing, CDGSH-type; KEGG: bra:BRADO2030 hypothetical protein YP_004695007.1 KEGG: nit:NAL212_1072 hypothetical protein YP_004695008.1 PFAM: Cell division protein ZapA-like; KEGG: nit:NAL212_1071 hypothetical protein YP_004695009.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; KEGG: ipa:Isop_0707 HAD-superfamily hydrolase YP_004695010.1 KEGG: nit:NAL212_1677 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_004695011.1 PFAM: Uncharacterised protein family UPF0310; KEGG: nit:NAL212_1678 hypothetical protein YP_004695012.1 PFAM: Protein of unknown function DUF81; KEGG: nit:NAL212_1679 hypothetical protein YP_004695013.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: nit:NAL212_0942 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004695014.1 PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like; KEGG: nit:NAL212_1555 NADPH:quinone reductase YP_004695015.1 PFAM: Transposase, IS4-like; KEGG: nit:NAL212_2951 transposase IS4 family protein YP_004695016.1 KEGG: nit:NAL212_2625 hypothetical protein YP_004695017.1 PFAM: Glycosyl transferase, group 1; KEGG: nit:NAL212_1316 glycosyl transferase group 1 YP_004695018.1 KEGG: nit:NAL212_1318 sulfotransferase YP_004695019.1 PFAM: Transposase, IS4-like; KEGG: gur:Gura_1234 hypothetical protein YP_004695021.1 PFAM: Transposase, IS4-like; KEGG: nit:NAL212_2951 transposase IS4 family protein YP_004695022.1 KEGG: nit:NAL212_2982 PEP motif anchor domain-containing protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_004695023.1 KEGG: nit:NAL212_0086 hypothetical protein YP_004695024.1 KEGG: noc:Noc_1605 hypothetical protein; TIGRFAM: YbhB/YbcL; PFAM: Phosphatidylethanolamine-binding protein PEBP YP_004695025.1 PFAM: Nitroreductase-like; KEGG: rfr:Rfer_0382 hypothetical protein YP_004695026.1 PFAM: Class I peptide chain release factor; KEGG: nit:NAL212_2262 class I peptide chain release factor YP_004695027.1 PFAM: Protein of unknown function DUF1415; KEGG: slt:Slit_2349 hypothetical protein YP_004695028.1 KEGG: slt:Slit_2348 aminoglycoside phosphotransferase; manually curated; PFAM: Aminoglycoside phosphotransferase YP_004695029.1 KEGG: dol:Dole_2268 hypothetical protein YP_004695030.1 KEGG: nit:NAL212_3025 viral A-type inclusion protein repeat containing protein YP_004695031.1 KEGG: ctt:CtCNB1_2990 hypothetical protein YP_004695032.1 KEGG: nit:NAL212_3069 hypothetical protein YP_004695033.1 KEGG: dak:DaAHT2_2156 hypothetical protein YP_004695034.1 KEGG: nit:NAL212_3066 hypothetical protein YP_004695035.1 KEGG: net:Neut_1124 hypothetical protein YP_004695036.1 KEGG: pna:Pnap_2646 hypothetical protein YP_004695037.1 PFAM: Integrase, catalytic core, phage; KEGG: net:Neut_1755 phage integrase YP_004695038.1 KEGG: nit:NAL212_2788 hypothetical protein YP_004695040.1 KEGG: nit:NAL212_0956 hypothetical protein YP_004695041.1 KEGG: afe:Lferr_1426 integrase catalytic subunit; manually curated; PFAM: Integrase, catalytic core YP_004695042.1 PFAM: Transposase IS3/IS911; KEGG: net:Neut_2500 transposase IS3/IS911 YP_004695044.1 PFAM: Glycosyl transferase, family 2; GtrA-like protein; Glycosyl transferase, family 39; KEGG: nmu:Nmul_A1764 dolichyl-phosphate beta-D-mannosyltransferase YP_004695046.1 KEGG: nda:Ndas_3717 methyltransferase type 12 YP_004695047.1 KEGG: nmu:Nmul_A0618 cytochrome c1 signal peptide protein YP_004695048.1 KEGG: nmu:Nmul_A1496 hypothetical protein YP_004695049.1 manually curated; KEGG: nit:NAL212_0007 hypothetical protein YP_004695050.1 KEGG: nit:NAL212_0008 hypothetical protein YP_004695051.1 KEGG: nit:NAL212_0009 hypothetical protein YP_004695053.1 PFAM: Transposase IS3/IS911; KEGG: net:Neut_2500 transposase IS3/IS911 YP_004695054.1 KEGG: afe:Lferr_1426 integrase catalytic subunit; manually curated; PFAM: Integrase, catalytic core YP_004695055.1 KEGG: net:Neut_2405 transposase, mutator type YP_004695056.1 PFAM: Protein of unknown function DUF1917; KEGG: nit:NAL212_0075 hypothetical protein YP_004695057.1 KEGG: nit:NAL212_0074 DNA methylase YP_004695058.1 KEGG: nit:NAL212_0145 regulatory protein, FmdB family; TIGRFAM: Regulatory protein, FmdB, PFAM: Regulatory protein, FmdB YP_004695059.1 PFAM: Carbonic anhydrase; KEGG: nit:NAL212_0146 carbonic anhydrase YP_004695060.1 KEGG: nit:NAL212_0147 sigma54 specific transcriptional regulator, Fis family; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core YP_004695061.1 KEGG: reu:Reut_A1185 ATPase, E1-E2 type; TIGRFAM: ATPase, P-type, plasma-membrane proton-efflux; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: ATPase, P-type, ATPase-associated region; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase; ATPase, P-type cation-transporter, C-terminal YP_004695062.1 PFAM: Di-haem cytochrome c peroxidase; KEGG: net:Neut_1521 cytochrome-c peroxidase YP_004695063.1 PFAM: Sulphur relay, DsrE-like protein; KEGG: nhl:Nhal_2753 DsrE family protein YP_004695064.1 PFAM: Ferric reductase-like transmembrane component, N-terminal; Oxidoreductase FAD-binding region; Oxidoreductase FAD/NAD(P)-binding; KEGG: app:CAP2UW1_2674 ferric reductase domain-containing protein protein transmembrane component domain-containing protein YP_004695065.1 TIGRFAM: Phosphate binding protein; KEGG: nit:NAL212_2082 phosphate binding protein YP_004695066.1 KEGG: tbd:Tbd_2610 periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; ATP-binding region, ATPase-like YP_004695067.1 KEGG: response regulator, OmpR family; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004695068.1 KEGG: nit:NAL212_2282 hypothetical protein YP_004695069.1 KEGG: nit:NAL212_0893 hypothetical protein YP_004695070.1 KEGG: rpd:RPD_2508 hypothetical protein YP_004695071.1 KEGG: nit:NAL212_1820 hypothetical protein YP_004695072.1 KEGG: neu:NE1752 hypothetical protein YP_004695073.1 KEGG: neu:NE1179 transmembrane protein YP_004695074.1 KEGG: nit:NAL212_1773 hypothetical protein YP_004695075.1 KEGG: dol:Dole_2710 hypothetical protein YP_004695076.1 PFAM: Transposase, IS4-like; KEGG: xbo:XBJ1_1885 transposase YP_004695077.1 KEGG: nit:NAL212_1513 aspartate kinase; TIGRFAM: Aspartate kinase region; Aspartate kinase, monofunctional class; PFAM: Aspartate/glutamate/uridylate kinase; Amino acid-binding ACT YP_004695078.1 PFAM: Class II aldolase/adducin, N-terminal; KEGG: nit:NAL212_0867 class II aldolase/adducin family protein YP_004695079.1 KEGG: nit:NAL212_0866 RNA-binding S4 domain-containing protein; PFAM: RNA-binding S4; SMART: RNA-binding S4 YP_004695080.1 PFAM: Peroxiredoxin, OsmC-like protein; KEGG: nit:NAL212_0865 OsmC family protein YP_004695081.1 KEGG: nit:NAL212_0864 hypothetical protein YP_004695082.1 PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal; NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal; KEGG: slt:Slit_2280 NAD-dependent glycerol-3-phosphate dehydrogenase domain protein YP_004695083.1 KEGG: nit:NAL212_0855 branched-chain amino acid aminotransferase; TIGRFAM: Branched-chain amino acid aminotransferase I; PFAM: Aminotransferase, class IV YP_004695084.1 KEGG: nit:NAL212_0854 hypothetical protein YP_004695085.1 PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal; KEGG: nit:NAL212_0853 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I YP_004695086.1 KEGG: nit:NAL212_0852 NAD+ synthetase; TIGRFAM: NAD+ synthase; PFAM: NAD+ synthase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004695087.1 PFAM: Peptidase M48, Ste24p; KEGG: nit:NAL212_0851 peptidase M48 Ste24p YP_004695088.1 KEGG: nit:NAL212_0850 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004695089.1 KEGG: nit:NAL212_0849 phosphonate-transporting ATPase; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004695090.1 PFAM: Protein of unknown function DUF214, permase predicted; KEGG: nit:NAL212_0848 hypothetical protein YP_004695091.1 PFAM: Exopolysaccharide synthesis, ExoD; KEGG: nit:NAL212_0212 exopolysaccharide synthesis ExoD YP_004695092.1 KEGG: nit:NAL212_1945 signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like YP_004695093.1 KEGG: nit:NAL212_1946 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal YP_004695094.1 KEGG: nit:NAL212_1947 hypothetical protein YP_004695095.1 PFAM: Protein of unknown function DUF1597; KEGG: nit:NAL212_1948 hypothetical protein YP_004695096.1 KEGG: nit:NAL212_1949 hypothetical protein YP_004695097.1 PFAM: Protein of unknown function DUF1597; KEGG: nit:NAL212_1950 hypothetical protein YP_004695098.1 KEGG: nit:NAL212_1586 ribonuclease, Rne/Rng family; TIGRFAM: Ribonuclease E/G; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; Ribosomal protein S1, RNA binding domain YP_004695099.1 TIGRFAM: Maf-like protein; HAMAP: Maf-like protein; KEGG: nit:NAL212_1585 maf protein; PFAM: Maf-like protein YP_004695100.1 PFAM: SPOUT methyltransferase, predicted; manually curated; TIGRFAM: Conserved hypothetical protein CHP00246; KEGG: nit:NAL212_1584 SPOUT methyltransferase; HAMAP: Ribosomal RNA large subunit methyltransferase H YP_004695101.1 KEGG: nit:NAL212_1583 iojap-like protein; TIGRFAM: Iojap-related protein; PFAM: Iojap-related protein YP_004695102.1 TIGRFAM: Probable nicotinate-nucleotide adenylyltransferase; Cytidyltransferase-related; HAMAP: nicotinate-nucleotide adenylyltransferase; KEGG: nit:NAL212_1582 nicotinate-nucleotide adenylyltransferase; PFAM: Cytidylyltransferase YP_004695103.1 PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding; KEGG: nit:NAL212_1581 dihydrolipoyllysine-residue acetyltransferase YP_004695104.1 KEGG: nit:NAL212_1580 2-oxo-acid dehydrogenase E1 subunit, homodimeric type; TIGRFAM: 2-oxo-acid dehydrogenase E1 component homodimeric type; PFAM: Transketolase, N-terminal YP_004695105.1 KEGG: nit:NAL212_1579 methylenetetrahydrofolate dehydrogenase (NADP(+)); HAMAP: Tetrahydrofolate dehydrogenase/cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YP_004695106.1 KEGG: nit:NAL212_1578 hypothetical protein YP_004695107.1 KEGG: nit:NAL212_1577 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: Methylenetetrahydrofolate reductase YP_004695108.1 TIGRFAM: S-adenosyl-L-homocysteine hydrolase; HAMAP: Adenosylhomocysteinase; KEGG: nit:NAL212_1576 adenosylhomocysteinase; PFAM: S-adenosyl-L-homocysteine hydrolase; S-adenosyl-L-homocysteine hydrolase, NAD binding YP_004695109.1 TIGRFAM: S-adenosylmethionine synthetase; HAMAP: S-adenosylmethionine synthase; KEGG: nit:NAL212_1575 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase YP_004695110.1 KEGG: pbr:PB2503_07429 hypothetical protein YP_004695111.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: pbr:PB2503_07499 hydrolase YP_004695112.1 PFAM: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase; KEGG: gvi:gll4223 hypothetical protein YP_004695113.1 KEGG: gvi:gsl4224 acyl carrier protein YP_004695114.1 PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal; Acyl transferase; 4'-phosphopantetheinyl transferase; KEGG: gvi:gll4225 glycolipid synthase YP_004695115.1 TIGRFAM: Polyketide-type polyunsaturated fatty acid synthase, PfaA; KEGG: pbr:PB2503_07474 modular polyketide synthase; PFAM: Beta-ketoacyl synthase, N-terminal; 2-nitropropane dioxygenase, NPD; Beta-ketoacyl synthase, C-terminal; Acyl transferase; Phosphopantetheine-binding; Polyketide synthase, KR YP_004695116.1 KEGG: eba:ebA563 transposition helper protein; manually curated; PFAM: Transposase IS200-like YP_004695117.1 PFAM: Phospholipase/carboxylesterase; KEGG: dsh:Dshi_0713 poly(3-hydroxybutyrate) depolymerase-like protein YP_004695118.1 TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial; KEGG: nit:NAL212_2318 PEP motif anchor domain-containing protein YP_004695119.1 KEGG: nfa:nfa33950 hypothetical protein YP_004695120.1 KEGG: gvi:glr4232 hypothetical protein YP_004695121.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: nit:NAL212_2512 CDP-alcohol phosphatidyltransferase YP_004695122.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: nit:NAL212_2514 endonuclease/exonuclease/phosphatase YP_004695123.1 TIGRFAM: Peptidase S16, ATP-dependent protease La; PFAM: Peptidase S16, lon C-terminal; Peptidase S16, lon N-terminal; ATPase, AAA-type, core; KEGG: nit:NAL212_2515 anti-sigma H sporulation factor, LonB; SMART: Peptidase S16, lon N-terminal; ATPase, AAA+ type, core YP_004695124.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Clp protease, ATP-binding subunit ClpX; KEGG: nit:NAL212_2516 ATP-dependent Clp protease, ATP-binding subunit ClpX; HAMAP: Clp protease, ATP-binding subunit ClpX; PFAM: ATPase associated with various cellular activities, AAA-2; Zinc finger, C4-type; Clp ATPase, C-terminal YP_004695125.1 TIGRFAM: Peptidase S14, ClpP; HAMAP: ATP-dependent Clp protease proteolytic subunit; KEGG: nit:NAL212_2517 ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: Peptidase S14, ClpP YP_004695126.1 TIGRFAM: Trigger factor; HAMAP: Trigger factor; KEGG: nit:NAL212_2518 trigger factor; PFAM: Trigger factor, ribosome-binding, bacterial; Peptidyl-prolyl cis-trans isomerase, FKBP-type; Trigger factor, C-terminal, bacterial YP_004695127.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: nit:NAL212_2519 short-chain dehydrogenase/reductase SDR YP_004695128.1 TIGRFAM: Chaperonin Cpn60; HAMAP: 60 kDa chaperonin; KEGG: nit:NAL212_2520 chaperonin GroEL; PFAM: Chaperonin Cpn60/TCP-1 YP_004695129.1 KEGG: nit:NAL212_2521 chaperonin Cpn10; HAMAP: Chaperonin Cpn10, subgroup; PFAM: Chaperonin Cpn10 YP_004695130.1 PFAM: Transposase, IS4-like; KEGG: dar:Daro_2223 transposase IS4 YP_004695131.1 TIGRFAM: PAS; PFAM: Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor region; PAS fold; ATP-binding region, ATPase-like; KEGG: nit:NAL212_1749 signal transduction histidine kinase; SMART: PAS; PAC motif; ATP-binding region, ATPase-like YP_004695132.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region; KEGG: nit:NAL212_1748 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region YP_004695133.1 KEGG: dia:Dtpsy_2525 isxo7 transposase YP_004695134.1 PFAM: TENA/THI-4 protein/Coenzyme PQQ biosynthesis protein C; KEGG: nit:NAL212_1610 TenA/THI-4 domain-containing protein YP_004695135.1 TIGRFAM: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; HAMAP: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; KEGG: nit:NAL212_1609 5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase; PFAM: Methionine synthase, vitamin-B12 independent; Cobalamin (vitamin B12)-independent methionine synthase MetE, N-terminal YP_004695136.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: nit:NAL212_1608 transcriptional regulator, LysR family YP_004695137.1 KEGG: mts:MTES_0753 hypothetical protein YP_004695138.1 KEGG: nit:NAL212_1035 hypothetical protein YP_004695139.1 KEGG: nit:NAL212_1034 glutaredoxin-like protein; TIGRFAM: Glutaredoxin-related protein; PFAM: Glutaredoxin YP_004695140.1 KEGG: nit:NAL212_1033 protein-(glutamine-N5) methyltransferase, release factor-specific; TIGRFAM: Protein-(glutamine-N5) methyltransferase, release factor-specific; Modification methylase HemK; PFAM: Methyltransferase small YP_004695141.1 TIGRFAM: Peptide chain release factor 1; HAMAP: Peptide chain release factor 1; KEGG: nit:NAL212_1032 peptide chain release factor 1; PFAM: Class I peptide chain release factor; Peptide chain release factor YP_004695142.1 TIGRFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase; HAMAP: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase; KEGG: nit:NAL212_1031 glutamyl-tRNA reductase; PFAM: Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, C-terminal YP_004695143.1 PFAM: CreA; KEGG: nit:NAL212_1030 CreA family protein YP_004695144.1 PFAM: Carbonic anhydrase; KEGG: nit:NAL212_0011 carbonic anhydrase YP_004695145.1 KEGG: nit:NAL212_1029 hypothetical protein YP_004695146.1 KEGG: nit:NAL212_1028 dihydrolipoamide dehydrogenase; TIGRFAM: Dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation YP_004695147.1 PFAM: Glycoside hydrolase, family 3, N-terminal; KEGG: nit:NAL212_1027 glycoside hydrolase 3 domain-containing protein YP_004695148.1 TIGRFAM: Phosphopantethiene-protein transferase; Holo-[acyl carrier protein] synthase; HAMAP: Holo-[acyl-carrier-protein] synthase; KEGG: nit:NAL212_1026 holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase YP_004695149.1 TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; HAMAP: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; KEGG: nit:NAL212_1025 pyridoxal phosphate biosynthetic protein PdxJ; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ YP_004695150.1 TIGRFAM: GTP-binding protein Era; Small GTP-binding protein; HAMAP: GTP-binding protein Era; KEGG: nit:NAL212_1024 GTP-binding protein Era; PFAM: GTP-binding protein, HSR1-related; K Homology, type 2 YP_004695151.1 SMART: Ribonuclease III; Double-stranded RNA binding; TIGRFAM: Ribonuclease III, bacterial; KEGG: nit:NAL212_1023 ribonuclease III; HAMAP: Ribonuclease III, bacterial; PFAM: Ribonuclease III; Double-stranded RNA binding YP_004695152.1 KEGG: nit:NAL212_1022 transmembrane protein YP_004695153.1 KEGG: nit:NAL212_1021 signal peptidase I; TIGRFAM: Peptidase S26A, signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region YP_004695155.1 TIGRFAM: GTP-binding protein LepA; Small GTP-binding protein; HAMAP: GTP-binding protein lepA; KEGG: nit:NAL212_1020 GTP-binding protein LepA; PFAM: GTP-binding protein LepA, C-terminal; Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal YP_004695156.1 PFAM: Glutaredoxin 2; KEGG: nit:NAL212_1019 glutaredoxin 2 YP_004695157.1 TIGRFAM: Peptidase S1C, Do; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; KEGG: nit:NAL212_1018 protease Do; SMART: PDZ/DHR/GLGF YP_004695158.1 PFAM: MucB/RseB; KEGG: nit:NAL212_1017 sigma E regulatory protein, MucB/RseB YP_004695159.1 PFAM: Anti sigma-E protein RseA, N-terminal; KEGG: nit:NAL212_1016 anti sigma-E protein, RseA YP_004695160.1 KEGG: nit:NAL212_1015 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 RpoE type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2 YP_004695161.1 KEGG: nit:NAL212_1014 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal YP_004695162.1 PFAM: MEKHLA; KEGG: nit:NAL212_1013 MEKHLA domain-containing protein YP_004695164.1 KEGG: gme:Gmet_1436 hypothetical protein YP_004695166.1 TIGRFAM: ATPase, K+ transporting, A subunit; HAMAP: ATPase, K+ transporting, A subunit; KEGG: dar:Daro_1087 potassium-transporting ATPase subunit A; PFAM: ATPase, K+ transporting, A subunit YP_004695167.1 TIGRFAM: Potassium-transporting ATPase, B chain; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; HAMAP: Potassium-transporting ATPase, B chain; KEGG: lhk:LHK_01573 K+transporting ATPase, B subunit; PFAM: ATPase, P-type, ATPase-associated region; Haloacid dehalogenase-like hydrolase YP_004695168.1 TIGRFAM: Potassium transporting ATPase, C subunit; HAMAP: Potassium transporting ATPase, C subunit; KEGG: dar:Daro_1085 potassium-transporting ATPase subunit C; PFAM: Potassium transporting ATPase, C subunit YP_004695169.1 KEGG: bph:Bphy_2054 osmosensitive K+ channel signal transduction histidine kinase; PFAM: Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal; UspA; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004695170.1 KEGG: bgl:bglu_1g26240 two component transcriptional regulator, winged helix family protein; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004695171.1 KEGG: dar:Daro_1624 hypothetical protein YP_004695173.1 KEGG: dar:Daro_2699 hypothetical protein YP_004695174.1 PFAM: Integrase, catalytic core, phage; KEGG: dar:Daro_1675 phage integrase YP_004695175.1 KEGG: llo:LLO_1648 hypothetical protein YP_004695176.1 KEGG: nit:NAL212_1329 hypothetical protein YP_004695178.1 TIGRFAM: SAICAR synthetase; HAMAP: Phosphoribosylaminoimidazole-succinocarboxamide synthase; KEGG: nit:NAL212_1554 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase YP_004695179.1 KEGG: nit:NAL212_1553 phosphoribosylaminoimidazole carboxylase, ATPase subunit; TIGRFAM: Phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type YP_004695180.1 KEGG: nit:NAL212_1552 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; PFAM: 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_004695181.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: nit:NAL212_1551 biopolymer transport protein ExbD/TolR YP_004695182.1 PFAM: Manganese/iron superoxide dismutase, C-terminal; Manganese/iron superoxide dismutase, N-terminal; KEGG: nit:NAL212_1550 superoxide dismutase YP_004695183.1 TIGRFAM: ATP phosphoribosyltransferase, catalytic region; HAMAP: ATP phosphoribosyltransferase; KEGG: nit:NAL212_1549 ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase, catalytic region YP_004695184.1 TIGRFAM: Histidinol dehydrogenase, prokaryotic-type; HAMAP: Histidinol dehydrogenase, prokaryotic-type; KEGG: nit:NAL212_1548 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase, prokaryotic-type YP_004695185.1 PFAM: tRNA/rRNA methyltransferase, SpoU; KEGG: nit:NAL212_1547 tRNA/rRNA methyltransferase (SpoU) YP_004695186.1 KEGG: nit:NAL212_1546 hypothetical protein YP_004695187.1 SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; TIGRFAM: Excinuclease ABC, B subunit; KEGG: nit:NAL212_1545 UvrABC system protein B; HAMAP: Excinuclease ABC, B subunit; PFAM: DNA/RNA helicase, C-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; UvrB/UvrC protein YP_004695188.1 PFAM: Aminotransferase, class I/II; KEGG: nit:NAL212_1544 aspartate transaminase YP_004695189.1 PFAM: Flagellar transcriptional activator FlhC; KEGG: nit:NAL212_1543 flagellar transcriptional activator FlhC YP_004695190.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; KEGG: net:Neut_2285 response regulator receiver modulated diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted YP_004695191.1 KEGG: meh:M301_2344 integrase; manually curated; PFAM: Integrase, catalytic core, phage YP_004695192.1 KEGG: nit:NAL212_0325 replication initiation factor YP_004695193.1 KEGG: dar:Daro_1040 hypothetical protein YP_004695194.1 KEGG: dak:DaAHT2_2022 hypothetical protein YP_004695195.1 PFAM: Transposase, IS4-like; KEGG: tgr:Tgr7_1308 ISRSO18-transposase YP_004695196.1 KEGG: plt:Plut_1823 hypothetical protein YP_004695199.1 manually curated YP_004695200.1 TIGRFAM: Addiction module antidote protein, HI1420; KEGG: dpr:Despr_0176 addiction module antidote protein YP_004695201.1 KEGG: nit:NAL212_0344 addiction module killer protein; TIGRFAM: Addiction module killer protein, HI1419; PFAM: Protein of unknown function DUF891 YP_004695202.1 SMART: Ribosomal RNA adenine methylase transferase, N-terminal; TIGRFAM: Ribosomal RNA adenine dimethylase; KEGG: nit:NAL212_0827 dimethyladenosine transferase; HAMAP: Ribosomal RNA adenine dimethylase; PFAM: Ribosomal RNA adenine methylase transferase YP_004695203.1 TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; HAMAP: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; KEGG: nit:NAL212_0826 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA YP_004695204.1 KEGG: nit:NAL212_0825 SurA domain; HAMAP: Chaperone surA; PFAM: SurA N-terminal; Peptidyl-prolyl cis-trans isomerase, PpiC-type YP_004695205.1 KEGG: nit:NAL212_0824 organic solvent tolerance protein; HAMAP: LPS-assembly protein lptD; PFAM: Organic solvent tolerance protein; OstA-like protein YP_004695206.1 KEGG: nit:NAL212_2425 transcriptional regulator, BadM/Rrf2 family; TIGRFAM: ISC system FeS cluster assembly, IscR transcription factor; Transcriptional regulator, Rrf2; PFAM: Transcriptional regulator, Rrf2 YP_004695207.1 KEGG: nit:NAL212_2424 iron-sulfur cluster assembly accessory protein; TIGRFAM: FeS cluster insertion; PFAM: FeS cluster biogenesis YP_004695208.1 KEGG: nit:NAL212_2423 FeS assembly protein SufB; TIGRFAM: SUF system FeS cluster assembly, SufB; PFAM: SUF system FeS cluster assembly, SufBD YP_004695209.1 TIGRFAM: ATPase SufC, SUF system FeS cluster assembly; PFAM: ABC transporter-like; KEGG: nit:NAL212_2422 FeS assembly ATPase SufC; SMART: ATPase, AAA+ type, core YP_004695210.1 KEGG: nit:NAL212_2421 FeS assembly protein SufD; TIGRFAM: SUF system FeS cluster assembly, SufD; PFAM: SUF system FeS cluster assembly, SufBD YP_004695211.1 KEGG: nit:NAL212_2420 cysteine desulfurase, SufS subfamily; TIGRFAM: Cysteine desulfurase, SufS; PFAM: Aminotransferase, class V/Cysteine desulfurase YP_004695212.1 KEGG: nit:NAL212_2419 SUF system FeS assembly protein, NifU family; TIGRFAM: SUF system FeS cluster assembly, SufU scaffold; PFAM: NIF system FeS cluster assembly, NifU, N-terminal YP_004695213.1 PFAM: NIF system FeS cluster assembly, NifU-like scaffold, N-terminal; NIF system FeS cluster assembly, NifU, C-terminal; KEGG: nit:NAL212_2418 scaffold protein Nfu/NifU YP_004695214.1 TIGRFAM: Translation elongation factor P; HAMAP: Translation elongation factor P; KEGG: nit:NAL212_2417 translation elongation factor P; PFAM: Elongation factor P, C-terminal; Translation elongation factor P/YeiP, central; Translation elongation factor, KOW-like YP_004695215.1 PFAM: Uncharacterised conserved protein UCP015557; KEGG: nit:NAL212_2416 hypothetical protein YP_004695216.1 KEGG: nit:NAL212_2415 hypothetical protein YP_004695217.1 PFAM: UspA; KEGG: nmu:Nmul_A0904 hypothetical protein YP_004695218.1 PFAM: SH3, type 3; KEGG: nit:NAL212_2226 SH3 type 3 domain-containing protein YP_004695219.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; HAMP linker domain; KEGG: nit:NAL212_2227 diguanylate cyclase; SMART: Diguanylate cyclase, predicted; HAMP linker domain YP_004695220.1 PFAM: Globin, truncated bacterial-like; KEGG: nit:NAL212_2228 globin YP_004695221.1 PFAM: Malic enzyme, NAD-binding; Malic enzyme, N-terminal; KEGG: nit:NAL212_2229 malic protein NAD-binding protein YP_004695222.1 KEGG: nit:NAL212_2230 phosphoserine phosphatase SerB; TIGRFAM: Phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB, PSPase-like; PFAM: Haloacid dehalogenase-like hydrolase YP_004695223.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; Metal-dependent hydrolase HDOD; KEGG: nit:NAL212_2231 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004695224.1 KEGG: nit:NAL212_2232 cytosol aminopeptidase; HAMAP: cytosol aminopeptidase; PFAM: Peptidase M17, leucyl aminopeptidase, C-terminal; Peptidase M17, leucyl aminopeptidase, N-terminal YP_004695225.1 PFAM: DNA polymerase III chi subunit, HolC; KEGG: nit:NAL212_2233 DNA polymerase III chi subunit HolC YP_004695226.1 KEGG: nit:NAL212_2234 hypothetical protein YP_004695227.1 TIGRFAM: Valyl-tRNA synthetase, class Ia; HAMAP: Valyl-tRNA synthetase; KEGG: nit:NAL212_2235 valyl-tRNA synthetase YP_004695228.1 KEGG: mep:MPQ_2006 hypothetical protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_004695230.1 PFAM: Integrase, catalytic core, phage; KEGG: nit:NAL212_3061 integrase YP_004695232.1 KEGG: nit:NAL212_3063 hypothetical protein YP_004695233.1 KEGG: ajs:Ajs_3336 hypothetical protein YP_004695235.1 KEGG: nit:NAL212_3066 hypothetical protein YP_004695236.1 KEGG: rsc:RCFBP_11467 DNA primase-like protein YP_004695237.1 KEGG: dia:Dtpsy_2525 isxo7 transposase YP_004695238.1 KEGG: rsc:RCFBP_11467 DNA primase-like protein YP_004695239.1 KEGG: nit:NAL212_3069 hypothetical protein YP_004695240.1 KEGG: nit:NAL212_3071 hypothetical protein YP_004695241.1 KEGG: nit:NAL212_3072 hypothetical protein YP_004695243.1 KEGG: nit:NAL212_2461 RIO-like kinase; PFAM: RIO-like kinase; SMART: RIO kinase YP_004695244.1 KEGG: nit:NAL212_2460 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; SMART: Metal-dependent phosphohydrolase, HD region YP_004695245.1 PFAM: Sodium:dicarboxylate symporter; KEGG: nit:NAL212_2459 sodium:dicarboxylate symporter YP_004695246.1 KEGG: nit:NAL212_2458 coproporphyrinogen oxidase; HAMAP: Coproporphyrinogen-III oxidase, aerobic; PFAM: Coproporphyrinogen III oxidase YP_004695248.1 KEGG: nit:NAL212_0953 chorismate synthase; TIGRFAM: Chorismate synthase; PFAM: Chorismate synthase YP_004695249.1 PFAM: Transposase, IS4-like; KEGG: xbo:XBJ1_1885 transposase YP_004695250.1 KEGG: nit:NAL212_3141 hypothetical protein YP_004695251.1 KEGG: nit:NAL212_1959 hypothetical protein YP_004695252.1 KEGG: nit:NAL212_3070 hypothetical protein YP_004695253.1 PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; KEGG: app:CAP2UW1_0999 hydrogen dehydrogenase YP_004695254.1 PFAM: Nickel-dependent hydrogenase, large subunit; KEGG: mca:MCA0114 NAD-reducing hydrogenase, beta subunit YP_004695255.1 KEGG: amr:AM1_2585 hypothetical protein YP_004695257.1 KEGG: nit:NAL212_0888 hypothetical protein YP_004695258.1 PFAM: Lipocalin-like; KEGG: nit:NAL212_0887 lipocalin family protein YP_004695259.1 KEGG: nit:NAL212_0884 hypothetical protein YP_004695260.1 KEGG: nit:NAL212_0884 hypothetical protein YP_004695261.1 KEGG: nit:NAL212_0883 beta-lactamase domain-containing protein YP_004695262.1 TIGRFAM: Acetate--CoA ligase; HAMAP: Acetyl-coenzyme A synthetase; KEGG: nit:NAL212_0882 acetate/CoA ligase; PFAM: AMP-dependent synthetase/ligase YP_004695263.1 KEGG: nit:NAL212_0881 hypothetical protein; HAMAP: Uncharacterised protein family UPF0090, bacteria; PFAM: Uncharacterised protein family UPF0090 YP_004695264.1 KEGG: nit:NAL212_0880 NusA antitermination factor; TIGRFAM: Transcription termination factor NusA; Transcription termination factor NusA, C-terminal duplication; PFAM: Transcription factor NusA, N-terminal; Ribosomal protein S1, RNA binding domain YP_004695265.1 KEGG: nit:NAL212_0879 translation initiation factor IF-2; TIGRFAM: Initiation factor 2; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Initiation factor 2 associated region, bacterial; Translation initiation factor IF-2, N-terminal; Translation elongation factor EFTu/EF1A, domain 2 YP_004695266.1 TIGRFAM: Ribosome-binding factor A; HAMAP: Ribosome-binding factor A; KEGG: nit:NAL212_0878 ribosome-binding factor A; PFAM: Ribosome-binding factor A YP_004695267.1 TIGRFAM: Pseudouridine synthase II, TruB, N-terminal, bacterial-type; HAMAP: tRNA pseudouridine synthase B; KEGG: nit:NAL212_0877 tRNA pseudouridine synthase B; PFAM: Pseudouridine synthase II, TruB, N-terminal; Pseudouridine synthase II, TruB, subfamily 1, C-terminal, bacterial-type YP_004695268.1 PFAM: Protein of unknown function DUF486; KEGG: nit:NAL212_0823 hypothetical protein YP_004695270.1 TIGRFAM: Carboxylyase-related; HAMAP: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; KEGG: nit:NAL212_0822 UbiD family decarboxylase; PFAM: Carboxylyase-related YP_004695271.1 TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; HAMAP: 4-hydroxybenzoate octaprenyltransferase; KEGG: nit:NAL212_0821 4-hydroxybenzoate octaprenyltransferase; PFAM: UbiA prenyltransferase YP_004695272.1 KEGG: nit:NAL212_0820 chorismate--pyruvate lyase; HAMAP: Chorismate--pyruvate lyase; PFAM: Chorismate--pyruvate lyase YP_004695274.1 KEGG: pcr:Pcryo_1229 hypothetical protein YP_004695275.1 TIGRFAM: DNA helicase, ATP-dependent, RecG; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; DNA/RNA helicase, C-terminal; KEGG: nit:NAL212_1861 ATP-dependent DNA helicase RecG; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004695276.1 KEGG: nit:NAL212_1860 endoribonuclease L-PSP; TIGRFAM: YjgF-like protein; PFAM: Endoribonuclease L-PSP YP_004695277.1 TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; HAMAP: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; KEGG: nit:NAL212_1859 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, core YP_004695278.1 KEGG: nit:NAL212_1858 hypothetical protein YP_004695279.1 TIGRFAM: Argininosuccinate lyase; HAMAP: Argininosuccinate lyase; KEGG: nit:NAL212_1857 argininosuccinate lyase; PFAM: Fumarate lyase YP_004695280.1 PFAM: Fructosamine/Ketosamine-3-kinase; KEGG: nit:NAL212_1856 fructosamine/ketosamine-3-kinase YP_004695281.1 TIGRFAM: CTP synthase; HAMAP: CTP synthase; KEGG: nit:NAL212_1855 CTP synthase; PFAM: CTP synthase, N-terminal; Glutamine amidotransferase class-I, C-terminal YP_004695282.1 TIGRFAM: Enolase; HAMAP: Enolase; KEGG: nit:NAL212_1854 enolase; PFAM: Enolase, C-terminal; Enolase, N-terminal YP_004695283.1 KEGG: nit:NAL212_1853 septum formation initiator; HAMAP: Cell division protein ftsB-like protein; PFAM: Septum formation initiator YP_004695284.1 HAMAP: protease htpX; KEGG: nit:NAL212_1852 peptidase M48 Ste24p YP_004695285.1 KEGG: nit:NAL212_1851 hypothetical protein YP_004695286.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region; KEGG: tkm:TK90_1372 response regulator receiver modulated diguanylate cyclase; SMART: Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region YP_004695287.1 KEGG: nit:NAL212_0404 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase YP_004695289.1 PFAM: YcfA-like; KEGG: nhl:Nhal_0117 YcfA family protein YP_004695290.1 PFAM: Uncharacterised protein family UPF0150; KEGG: alv:Alvin_0648 hypothetical protein YP_004695291.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: nit:NAL212_0398 alpha/beta hydrolase fold protein YP_004695292.1 PFAM: Peptidase M14, carboxypeptidase A; KEGG: hch:HCH_05013 zinc carboxypeptidase-related protein YP_004695293.1 PFAM: Metallophosphoesterase; KEGG: nit:NAL212_0396 metallophosphoesterase YP_004695294.1 PFAM: Patatin; KEGG: nit:NAL212_0395 patatin YP_004695295.1 TIGRFAM: Conserved hypothetical protein CHP00661; KEGG: nit:NAL212_0394 hypothetical protein YP_004695296.1 PFAM: Diacylglycerol kinase, catalytic region; KEGG: nit:NAL212_0393 diacylglycerol kinase catalytic region YP_004695297.1 KEGG: gvi:glr1903 hypothetical protein YP_004695298.1 KEGG: pbr:PB2503_07444 hypothetical protein YP_004695300.1 KEGG: nit:NAL212_0847 34 kDa membrane antigen YP_004695301.1 PFAM: Major facilitator superfamily MFS-1; KEGG: nit:NAL212_2498 major facilitator transporter YP_004695302.1 TIGRFAM: Fumarate hydratase, class II; HAMAP: Fumarate hydratase class II; KEGG: nit:NAL212_2499 fumarate hydratase, class II; PFAM: Fumarate lyase; Fumarase C, C-terminal YP_004695303.1 KEGG: nit:NAL212_2500 helix-turn-helix domain-containing protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004695304.1 PFAM: Plasmid stabilisation system; KEGG: nit:NAL212_2501 plasmid stabilization system YP_004695305.1 KEGG: eca:ECA2896 hypothetical protein YP_004695306.1 KEGG: cpc:Cpar_1103 hypothetical protein YP_004695307.1 PFAM: Ribonucleotide reductase; KEGG: nit:NAL212_2505 ribonucleoside-diphosphate reductase YP_004695308.1 KEGG: nit:NAL212_2506 ribonucleoside-diphosphate reductase, alpha subunit; TIGRFAM: Ribonucleoside-diphosphate reductase, alpha subunit; PFAM: Ribonucleotide reductase large subunit, C-terminal; Ribonucleotide reductase large subunit, N-terminal; ATP-cone YP_004695309.1 PFAM: Carbonic anhydrase, alpha-class, catalytic domain; KEGG: nit:NAL212_1475 carbonate dehydratase YP_004695310.1 KEGG: nit:NAL212_1476 hypothetical protein YP_004695311.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: nit:NAL212_0930 ornithine decarboxylase YP_004695312.1 KEGG: nit:NAL212_2551 hypothetical protein YP_004695313.1 KEGG: nit:NAL212_2553 hypothetical protein YP_004695314.1 KEGG: dar:Daro_2081 phospholipase D/transphosphatidylase; PFAM: Phospholipase D/Transphosphatidylase; SMART: Phospholipase D/Transphosphatidylase YP_004695315.1 PFAM: Collagen-binding surface protein Cna-like, B region; KEGG: nmu:Nmul_A1517 hypothetical protein YP_004695317.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS fold; KEGG: dar:Daro_1362 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS YP_004695318.1 PFAM: ABC transporter-like; KEGG: nmu:Nmul_A0982 spermidine/putrescine ABC transporter ATP-binding subunit YP_004695319.1 PFAM: Carbonic anhydrase, alpha-class, catalytic domain; KEGG: nit:NAL212_1475 carbonate dehydratase YP_004695320.1 KEGG: nit:NAL212_1476 hypothetical protein YP_004695321.1 KEGG: plt:Plut_1811 hypothetical protein YP_004695322.1 KEGG: nit:NAL212_1915 hypothetical protein YP_004695324.1 PFAM: GCN5-related N-acetyltransferase; KEGG: nit:NAL212_1936 GCN5-like N-acetyltransferase YP_004695325.1 PFAM: Invasion gene expression up-regulator, SirB; KEGG: nit:NAL212_1937 invasion gene expression up-regulator SirB YP_004695326.1 KEGG: nit:NAL212_1938 hypothetical protein YP_004695327.1 KEGG: nit:NAL212_1939 hypothetical protein YP_004695328.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: nit:NAL212_1940 hypothetical protein YP_004695329.1 PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: nit:NAL212_1941 rieske (2Fe-2S) iron-sulfur domain YP_004695330.1 KEGG: nit:NAL212_1942 hypothetical protein YP_004695331.1 TIGRFAM: Primosomal protein n; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; KEGG: nit:NAL212_1943 primosomal protein N'; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004695332.1 PFAM: Protein of unknown function DUF465; KEGG: nit:NAL212_1556 hypothetical protein YP_004695333.1 KEGG: nit:NAL212_2507 hypothetical protein; HAMAP: Protein of unknown function DUF188; PFAM: Protein of unknown function DUF188 YP_004695334.1 KEGG: nit:NAL212_2508 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_004695335.1 SMART: Excinuclease ABC, C subunit, N-terminal; Helix-hairpin-helix DNA-binding motif, class 1; TIGRFAM: Excinuclease ABC, C subunit; KEGG: nit:NAL212_2509 UvrABC system protein C; HAMAP: UvrABC system protein C; PFAM: Excinuclease ABC, C subunit, C-terminal; Excinuclease ABC, C subunit, N-terminal; UvrB/UvrC protein; Helix-hairpin-helix motif YP_004695336.1 PFAM: 4-oxalocrotonate tautomerase; KEGG: nit:NAL212_2510 4-oxalocrotonate tautomerase YP_004695337.1 PFAM: Uracil-DNA glycosylase-like; KEGG: nit:NAL212_2511 uracil-DNA glycosylase superfamily YP_004695338.1 PFAM: Bacterial surface antigen (D15); Surface antigen variable number; KEGG: nit:NAL212_1792 surface antigen (D15) YP_004695339.1 PFAM: Protein of unknown function DUF490; KEGG: nit:NAL212_1791 hypothetical protein YP_004695340.1 PFAM: Plasmid maintenance system killer; KEGG: gur:Gura_0413 plasmid maintenance system killer YP_004695341.1 TIGRFAM: Addiction module antidote protein, HigA; PFAM: Helix-turn-helix type 3; KEGG: geb:GM18_1267 XRE family plasmid maintenance system antidote protein; SMART: Helix-turn-helix type 3 YP_004695342.1 KEGG: nit:NAL212_1951 hypothetical protein YP_004695343.1 KEGG: nit:NAL212_1951 hypothetical protein YP_004695344.1 TIGRFAM: GTP-binding, EngA; Small GTP-binding protein; HAMAP: GTP-binding, EngA; KEGG: nit:NAL212_1231 ribosome-associated GTPase EngA; PFAM: GTP-binding protein, HSR1-related YP_004695345.1 TIGRFAM: Outer membrane assembly lipoprotein YfgL; PFAM: Pyrrolo-quinoline quinone repeat; KEGG: nit:NAL212_1230 outer membrane assembly lipoprotein YfgL; SMART: Pyrrolo-quinoline quinone beta-propeller repeat YP_004695346.1 PFAM: Protein of unknown function DUF2133; KEGG: nit:NAL212_1229 hypothetical protein YP_004695347.1 TIGRFAM: Histidyl-tRNA synthetase, class IIa, subgroup; HAMAP: Histidyl-tRNA synthetase, class IIa, subgroup; KEGG: nit:NAL212_1228 histidyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; Anticodon-binding YP_004695348.1 TIGRFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; HAMAP: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; KEGG: nit:NAL212_1227 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type YP_004695349.1 SMART: Helix-turn-helix type 3; KEGG: nit:NAL212_1226 transcriptional regulator, XRE family YP_004695350.1 KEGG: nit:NAL212_1225 type IV pilus biogenesis/stability protein PilW; TIGRFAM: Pilus biogenesis/stability type IV, PilW; PFAM: Tetratricopeptide TPR-1 YP_004695351.1 TIGRFAM: Ribosomal RNA large subunit methyltransferase RlmN; HAMAP: Ribosomal RNA large subunit methyltransferase RlmN; KEGG: nit:NAL212_1224 ribosomal RNA large subunit methyltransferase N; PFAM: Radical SAM YP_004695352.1 HAMAP: Nucleoside diphosphate kinase; PFAM: Nucleoside diphosphate kinase, core; KEGG: nit:NAL212_1223 nucleoside-diphosphate kinase; SMART: Nucleoside diphosphate kinase, core YP_004695353.1 KEGG: tgr:Tgr7_0713 rhodanese domain-containing protein; PFAM: Rhodanese-like; SMART: Rhodanese-like YP_004695354.1 KEGG: nit:NAL212_1221 hypothetical protein YP_004695355.1 PFAM: Protein of unknown function DUF540; KEGG: nit:NAL212_1220 hypothetical protein YP_004695356.1 KEGG: nit:NAL212_1219 flagellar biosynthesis anti-sigma factor protein FlgM; TIGRFAM: flagellar biosynthesis anti-sigma factor protein FlgM; PFAM: Anti-sigma-28 factor, FlgM YP_004695357.1 PFAM: FlgN; KEGG: nit:NAL212_1218 FlgN family protein YP_004695358.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: nit:NAL212_1217 OmpA/MotB domain-containing protein YP_004695359.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: nit:NAL212_1216 MotA/TolQ/ExbB proton channel YP_004695360.1 KEGG: nit:NAL212_1215 RNA polymerase, sigma 28 subunit, FliA/WhiG; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 3 YP_004695361.1 KEGG: nit:NAL212_1214 cobyrinic acid ac-diamide synthase YP_004695362.1 TIGRFAM: Signal-recognition particle (SRP)-type GTPase; PFAM: Signal recognition particle, SRP54 subunit, GTPase; KEGG: nit:NAL212_1213 flagellar biosynthetic protein FlhF; SMART: ATPase, AAA+ type, core YP_004695363.1 KEGG: nit:NAL212_1212 flagellar biosynthesis protein FlhA; TIGRFAM: Flagellar biosynthesis protein FlhA; PFAM: Type III secretion system FHIPEP YP_004695364.1 KEGG: nit:NAL212_1211 flagellar biosynthetic protein FlhB; TIGRFAM: Flagellar biosynthetic protein FlhB; PFAM: Type III secretion exporter YP_004695365.1 PFAM: Peptidase S45, penicillin amidase; KEGG: nit:NAL212_1210 acyl-homoserine-lactone acylase YP_004695366.1 KEGG: nit:NAL212_1380 hypothetical protein YP_004695367.1 KEGG: nit:NAL212_1381 undecaprenyl-phosphate glucose phosphotransferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase, WcaJ; Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase YP_004695368.1 KEGG: nit:NAL212_1056 hypothetical protein YP_004695369.1 PFAM: LemA; KEGG: nit:NAL212_2014 LemA family protein YP_004695370.1 PFAM: Protein of unknown function DUF477; KEGG: nit:NAL212_2015 hypothetical protein YP_004695371.1 PFAM: Protein of unknown function DUF477; KEGG: nit:NAL212_2016 hypothetical protein YP_004695372.1 TIGRFAM: Peptidase A31, hydrogen uptake protein; KEGG: nmu:Nmul_A1675 HoxW protein YP_004695373.1 KEGG: gca:Galf_1580 HupE/UreJ protein YP_004695374.1 TIGRFAM: Hydrogenase nickel incorporation protein HypA/HybF; HAMAP: Hydrogenase nickel incorporation protein HypA/HybF; KEGG: slt:Slit_2425 hydrogenase nickel insertion protein HypA; PFAM: Hydrogenase nickel incorporation protein HypA/HybF YP_004695375.1 KEGG: slt:Slit_2424 hydrogenase accessory protein HypB; TIGRFAM: Hydrogenase accessory protein HypB; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like YP_004695376.1 PFAM: Heat shock protein Hsp33 protein; KEGG: nit:NAL212_1286 HSP33 protein YP_004695377.1 KEGG: nhl:Nhal_1559 hypothetical protein YP_004695378.1 KEGG: nit:NAL212_1285 response regulator receiver; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004695379.1 KEGG: nit:NAL212_1284 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like YP_004695380.1 KEGG: nit:NAL212_1283 DNA internalization-related competence protein ComEC/Rec2; TIGRFAM: Competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein YP_004695381.1 SMART: MCP methyltransferase, CheR-type; PAS; TIGRFAM: PAS; KEGG: naz:Aazo_2376 signal transduction histidine kinase with CheB and CheR activity; PFAM: Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase; MCP methyltransferase, CheR-type; PAS fold YP_004695382.1 KEGG: mfa:Mfla_0814 signal transduction histidine kinase, glucose-6-phosphate specific; PFAM: ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; PAS YP_004695383.1 KEGG: mmb:Mmol_1373 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal YP_004695384.1 PFAM: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: nit:NAL212_1723 deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase YP_004695385.1 KEGG: nit:NAL212_1724 Sel1 domain-containing protein repeat-containing protein; PFAM: Sel1-like; SMART: Sel1-like YP_004695386.1 PFAM: Ankyrin repeat; KEGG: nit:NAL212_1725 ankyrin YP_004695387.1 KEGG: nit:NAL212_1726 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6; PFAM: FAD dependent oxidoreductase YP_004695388.1 KEGG: nit:NAL212_1727 TIM-barrel protein, nifR3 family; TIGRFAM: tRNA-dihydrouridine synthase, TIM-barrel, NifR3; PFAM: tRNA-dihydrouridine synthase YP_004695389.1 PFAM: Helix-turn-helix, Fis-type; KEGG: nit:NAL212_1728 transcriptional regulator, Fis family YP_004695390.1 SMART: AICARFT/IMPCHase bienzyme, formylation region; TIGRFAM: AICARFT/IMPCHase bienzyme; KEGG: nit:NAL212_1729 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; HAMAP: Bifunctional purine biosynthesis protein purH; PFAM: AICARFT/IMPCHase bienzyme, formylation region; MGS-like YP_004695391.1 TIGRFAM: Phosphoribosylglycinamide synthetase; HAMAP: Phosphoribosylglycinamide synthetase; KEGG: nit:NAL212_1730 phosphoribosylamine/glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain YP_004695392.1 KEGG: gca:Galf_1053 flagellar hook-associated protein 3; TIGRFAM: Flagellar hook-associated protein 3; PFAM: Flagellin, N-terminal YP_004695393.1 KEGG: nit:NAL212_1733 flagellar hook-associated protein FlgK; TIGRFAM: Flagellar hook-associated protein, FlgK; PFAM: Protein of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal YP_004695394.1 TIGRFAM: Flagellar protein FlgJ type-2; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; Flagellar protein FlgJ, N-terminal; KEGG: nit:NAL212_1734 flagellar rod assembly protein/muramidase FlgJ; SMART: Lysozyme subfamily 2 YP_004695395.1 KEGG: nit:NAL212_1735 flagellar P-ring protein; HAMAP: Flagellar P-ring protein; PFAM: Flagellar P-ring protein YP_004695396.1 KEGG: nit:NAL212_1736 flagellar L-ring protein; HAMAP: Flagellar L-ring protein; PFAM: Flagellar L-ring protein YP_004695397.1 KEGG: nit:NAL212_1737 flagellar basal-body rod protein FlgG; TIGRFAM: Flagellar basal-body rod FlgG; Fagellar hook-basal body protein, FlgE/F/G; PFAM: Protein of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal YP_004695398.1 KEGG: nit:NAL212_1738 flagellar basal-body rod protein FlgF; TIGRFAM: Flagellar basal-body rod FlgF; Fagellar hook-basal body protein, FlgE/F/G; PFAM: Flagellar basal body rod protein, N-terminal; Ribosomal protein L6, alpha-beta domain YP_004695399.1 KEGG: nit:NAL212_1739 fagellar hook-basal body protein; TIGRFAM: Fagellar hook-basal body protein, FlgE/F/G; PFAM: Flagellar basal body FlaE; Flagellar basal body rod protein, N-terminal; Protein of unknown function DUF1078, C-terminal YP_004695400.1 PFAM: Flagellar hook capping protein; KEGG: nit:NAL212_1740 flagellar hook capping protein YP_004695401.1 KEGG: nit:NAL212_1741 flagellar basal-body rod protein FlgC; TIGRFAM: Flagellar basal-body rod protein FlgC; PFAM: Protein of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal YP_004695402.1 KEGG: nit:NAL212_1743 flagellar basal-body rod protein FlgB; TIGRFAM: Flagellar basal-body rod protein FlgB; PFAM: Flagellar basal body rod protein, N-terminal YP_004695403.1 KEGG: nit:NAL212_1744 flagella basal body P-ring formation protein FlgA; TIGRFAM: Flagella basal body P-ring formation protein FlgA; PFAM: SAF domain YP_004695404.1 KEGG: nit:NAL212_1745 hypothetical protein YP_004695405.1 PFAM: Protein of unknown function DUF498; KEGG: nit:NAL212_1746 hypothetical protein YP_004695406.1 KEGG: nit:NAL212_2372 hypothetical protein YP_004695407.1 PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A; KEGG: nit:NAL212_2373 peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 YP_004695408.1 PFAM: Peptidase M32, carboxypeptidase Taq metallopeptidase; KEGG: nit:NAL212_2374 carboxypeptidase Taq YP_004695409.1 KEGG: nit:NAL212_2375 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP00701; PFAM: Uncharacterised protein family UPF0093 YP_004695410.1 KEGG: nit:NAL212_2376 helix-turn-helix domain-containing protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004695411.1 PFAM: Protein of unknown function DUF891; KEGG: pph:Ppha_2124 protein of unknown function DUF891 YP_004695413.1 TIGRFAM: Formylmethionine deformylase; HAMAP: Formylmethionine deformylase; KEGG: nit:NAL212_2409 peptide deformylase; PFAM: Formylmethionine deformylase YP_004695414.1 PFAM: Nucleoside phosphorylase; KEGG: nit:NAL212_2410 S-methyl-5'-thioadenosine phosphorylase YP_004695415.1 PFAM: Phosphoribosyltransferase; KEGG: nit:NAL212_2411 phosphoribosyltransferase YP_004695416.1 SMART: NAD-dependent DNA ligase, N-terminal; Helix-hairpin-helix DNA-binding motif, class 1; BRCT; TIGRFAM: NAD-dependent DNA ligase; KEGG: nit:NAL212_2412 DNA ligase, NAD-dependent; HAMAP: DNA ligase; PFAM: NAD-dependent DNA ligase, adenylation; NAD-dependent DNA ligase, OB-fold; Zinc-finger, NAD-dependent DNA ligase C4-type; Helix-hairpin-helix motif; BRCT YP_004695417.1 KEGG: nit:NAL212_2413 hypothetical protein YP_004695418.1 PFAM: NUDIX hydrolase domain; KEGG: nit:NAL212_2414 NUDIX hydrolase YP_004695419.1 PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A; Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal; KEGG: nit:NAL212_2325 beta-lactamase YP_004695420.1 PFAM: Aminotransferase, class IV; KEGG: nit:NAL212_2326 D-amino-acid transaminase YP_004695421.1 KEGG: nit:NAL212_2327 hypothetical protein; HAMAP: Protein of unknown function DUF493; PFAM: Protein of unknown function DUF493 YP_004695422.1 TIGRFAM: Octanoyltransferase; HAMAP: Octanoyltransferase; KEGG: nit:NAL212_2328 lipoate-protein ligase B; PFAM: Biotin/lipoate A/B protein ligase YP_004695423.1 SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: Lipoate synthase; KEGG: nit:NAL212_2329 lipoic acid synthetase; HAMAP: Lipoate synthase; PFAM: Radical SAM YP_004695425.1 PFAM: Peroxiredoxin, OsmC-like protein; KEGG: nit:NAL212_2330 OsmC family protein YP_004695426.1 PFAM: Cytochrome c, class I; KEGG: nit:NAL212_2331 cytochrome c class I YP_004695427.1 TIGRFAM: Dihydroxy-acid dehydratase; HAMAP: Dihydroxy-acid dehydratase; KEGG: nit:NAL212_2332 dihydroxy-acid dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase YP_004695428.1 TIGRFAM: Prolipoprotein diacylglyceryl transferase; HAMAP: Prolipoprotein diacylglyceryl transferase; KEGG: nit:NAL212_2333 prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase YP_004695430.1 KEGG: nit:NAL212_0469 hypothetical protein YP_004695431.1 PFAM: Transposase, IS4-like; KEGG: nit:NAL212_3145 IS5 family transposase YP_004695432.1 TIGRFAM: Signal transduction histidine kinase, phosphate regulon sensor PhoR; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold; KEGG: nit:NAL212_2335 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS YP_004695433.1 TIGRFAM: Signal transduction response regulator, phosphate regulon transcriptional regulatory protein phoB; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; KEGG: nit:NAL212_2336 two component transcriptional regulator PhoB, winged helix family; SMART: Signal transduction response regulator, receiver region YP_004695434.1 PFAM: Protein of unknown function DUF971; KEGG: nit:NAL212_2337 hypothetical protein YP_004695435.1 TIGRFAM: UbiE/COQ5 methyltransferase; HAMAP: UbiE/COQ5 methyltransferase; KEGG: nit:NAL212_2338 ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase YP_004695436.1 KEGG: pbr:PB2503_07504 hypothetical protein YP_004695437.1 KEGG: app:CAP2UW1_1523 NodT family RND efflux system, outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004695439.1 KEGG: gvi:gll1319 hypothetical protein YP_004695440.1 TIGRFAM: tRNA-specific 2-thiouridylase; HAMAP: tRNA-specific 2-thiouridylase; KEGG: nit:NAL212_2547 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; PFAM: tRNA methyl transferase-like YP_004695441.1 PFAM: NUDIX hydrolase domain; KEGG: nit:NAL212_2548 NUDIX hydrolase YP_004695442.1 KEGG: mmw:Mmwyl1_1181 integral membrane sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004695443.1 PFAM: Transposase, mutator type; KEGG: net:Neut_2405 transposase, mutator type YP_004695445.1 KEGG: hch:HCH_04215 hypothetical protein YP_004695446.1 KEGG: rde:RD1_0863 hypothetical protein YP_004695447.1 PFAM: Transposase, IS4-like; KEGG: gur:Gura_1234 hypothetical protein YP_004695448.1 KEGG: aex:Astex_1811 hypothetical protein YP_004695449.1 PFAM: Protein of unknown function DUF900, hydrolase-like; KEGG: aex:Astex_1810 hypothetical protein YP_004695450.1 KEGG: rpe:RPE_4585 hypothetical protein YP_004695451.1 KEGG: dac:Daci_3140 hypothetical protein YP_004695452.1 KEGG: dac:Daci_3141 hypothetical protein YP_004695453.1 PFAM: SEC-C motif; KEGG: app:CAP2UW1_3119 sec-C motif domain-containing protein YP_004695454.1 PFAM: Transposase, IS4-like; KEGG: tgr:Tgr7_1308 ISRSO18-transposase YP_004695455.1 KEGG: nit:NAL212_2546 magnesium and cobalt transport protein CorA; TIGRFAM: Magnesium/cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA-like YP_004695456.1 PFAM: Transposase IS3/IS911; KEGG: net:Neut_2500 transposase IS3/IS911 YP_004695457.1 KEGG: afe:Lferr_1426 integrase catalytic subunit; manually curated; PFAM: Integrase, catalytic core YP_004695459.1 PFAM: Haemolysin-type calcium-binding region; KEGG: nit:NAL212_1895 5'-nucleotidase YP_004695460.1 KEGG: nit:NAL212_2023 hypothetical protein YP_004695461.1 PFAM: Uncharacterised protein family UPF0118; KEGG: nit:NAL212_2698 hypothetical protein YP_004695462.1 PFAM: Transposase, IS4-like; KEGG: tgr:Tgr7_1308 ISRSO18-transposase YP_004695463.1 KEGG: mgm:Mmc1_3076 hypothetical protein YP_004695464.1 KEGG: hoh:Hoch_6445 thiol oxidoreductase-like protein YP_004695465.1 PFAM: Integral membrane protein TerC; KEGG: nit:NAL212_2785 integral membrane protein TerC YP_004695466.1 KEGG: nit:NAL212_2225 hypothetical protein YP_004695467.1 KEGG: nit:NAL212_1763 ribonuclease BN; TIGRFAM: Ribonuclease BN; PFAM: Ribonuclease BN-related YP_004695468.1 KEGG: nit:NAL212_0931 hypothetical protein YP_004695469.1 KEGG: nit:NAL212_1490 hypothetical protein YP_004695470.1 KEGG: afe:Lferr_1426 integrase catalytic subunit; manually curated; PFAM: Integrase, catalytic core YP_004695471.1 PFAM: Transposase IS3/IS911; KEGG: net:Neut_2500 transposase IS3/IS911 YP_004695472.1 PFAM: Transposase, IS4-like; KEGG: tgr:Tgr7_1308 ISRSO18-transposase YP_004695473.1 PFAM: DNA-repair protein, UmuC-like; KEGG: nit:NAL212_2528 DNA-directed DNA polymerase YP_004695474.1 TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T/DNA polymerase III; Excinuclease ABC, C subunit, N-terminal; KEGG: nit:NAL212_2527 DNA polymerase III, epsilon subunit; SMART: Exonuclease; Excinuclease ABC, C subunit, N-terminal YP_004695475.1 PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: nit:NAL212_2526 peptidase S24/S26A/S26B, conserved region YP_004695476.1 KEGG: msm:MSMEG_5583 HNH endonuclease YP_004695477.1 PFAM: Transposase, IS4-like; KEGG: dar:Daro_2223 transposase IS4 YP_004695479.1 PFAM: AsmA; KEGG: nit:NAL212_2018 AsmA family protein YP_004695480.1 KEGG: nit:NAL212_0955 hypothetical protein YP_004695481.1 KEGG: nit:NAL212_2551 hypothetical protein YP_004695482.1 PFAM: CsbD-like; KEGG: dar:Daro_2060 CsbD-like YP_004695484.1 PFAM: Haemerythrin/HHE cation-binding motif; KEGG: nit:NAL212_0423 hemerythrin HHE cation binding domain-containing protein YP_004695485.1 PFAM: Integrase, catalytic core; KEGG: rso:RSp0548 ISRSO8-transposase orfB protein YP_004695486.1 KEGG: hoh:Hoch_1738 hypothetical protein YP_004695488.1 KEGG: dar:Daro_2699 hypothetical protein YP_004695489.1 PFAM: Integrase, catalytic core, phage; KEGG: lpf:lpl0065 hypothetical protein YP_004695490.1 PFAM: Plasmid stabilisation system; KEGG: nit:NAL212_0367 plasmid stabilization system YP_004695491.1 PFAM: Helix-turn-helix type 3; KEGG: nit:NAL212_0368 helix-turn-helix domain-containing protein YP_004695492.1 KEGG: YecA family protein; TIGRFAM: YgfB/YecA protein; PFAM: SEC-C motif YP_004695494.1 KEGG: nit:NAL212_0371 hypothetical protein YP_004695495.1 KEGG: nit:NAL212_0372 hypothetical protein YP_004695496.1 PFAM: Replication endonuclease, probable, phage; KEGG: nit:NAL212_0373 replication protein A YP_004695499.1 PFAM: Integrase, catalytic core, phage; KEGG: dar:Daro_1675 phage integrase YP_004695500.1 TIGRFAM: PAS; PFAM: PAS fold; KEGG: nit:NAL212_2384 PAS sensor protein; SMART: PAC motif; PAS YP_004695501.1 KEGG: nit:NAL212_2385 polyketide cyclase/dehydrase YP_004695502.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: nit:NAL212_2386 FAD dependent oxidoreductase YP_004695503.1 TIGRFAM: glutamyl-queuosine tRNA(Asp) synthetase; HAMAP: Glutamyl-Q tRNA(Asp) synthetase; KEGG: nit:NAL212_2387 glutamyl-Q tRNA(Asp) synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain YP_004695504.1 KEGG: nit:NAL212_2390 UDP-N-acetylmuramate; TIGRFAM: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase; PFAM: Mur ligase, N-terminal; Mur ligase, central; Mur ligase, C-terminal YP_004695505.1 TIGRFAM: Adenine phosphoribosyl transferase; HAMAP: Adenine phosphoribosyl transferase; KEGG: nit:NAL212_2391 adenine phosphoribosyltransferase; PFAM: Phosphoribosyltransferase YP_004695506.1 KEGG: nit:NAL212_2392 nitrite reductase, copper-containing; TIGRFAM: Nitrite reductase, copper containing; PFAM: Multicopper oxidase, type 1; Multicopper oxidase, type 3 YP_004695507.1 KEGG: tbd:Tbd_0539 antiporter-2, CPA2 family monovalent cation/proton antiporter; TIGRFAM: K+/H+ exchanger; PFAM: Cation/H+ exchanger; Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal YP_004695508.1 KEGG: nit:NAL212_2393 glutamate/cysteine ligase; TIGRFAM: Glutamate--cysteine ligase GshA; PFAM: Glutamate--cysteine ligase GshA YP_004695509.1 TIGRFAM: Glutathione synthetase, prokaryotic; HAMAP: Glutathione synthetase, prokaryotic; KEGG: nit:NAL212_2394 glutathione synthetase; PFAM: Prokaryotic glutathione synthetase, ATP-binding; Prokaryotic glutathione synthetase, N-terminal YP_004695510.1 TIGRFAM: Peptidase M41, FtsH; PFAM: Peptidase M41; ATPase, AAA-type, core; Peptidase M41, FtsH extracellular; KEGG: nit:NAL212_2396 ATP-dependent metalloprotease FtsH; SMART: ATPase, AAA+ type, core YP_004695511.1 PFAM: Membrane protein, aromatic hydrocarbon degradation; KEGG: nit:NAL212_2397 membrane protein involved in aromatic hydrocarbon degradation YP_004695512.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS fold; KEGG: nit:NAL212_2398 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS; PAC motif YP_004695514.1 SMART: LamG-like jellyroll fold; KEGG: glo:Glov_2915 cell wall/surface repeat protein YP_004695515.1 PFAM: Aminotransferase, class I/II; KEGG: nit:NAL212_2291 cystathionine beta-lyase YP_004695516.1 PFAM: Sulphatase-modifying factor; Methyltransferase type 12; KEGG: nit:NAL212_2290 sulfatase-modifying factor protein YP_004695517.1 PFAM: Protein of unknown function DUF2064; KEGG: nit:NAL212_2036 hypothetical protein YP_004695518.1 PFAM: Glycosyl transferase, family 2; KEGG: nit:NAL212_2035 glycosyl transferase 2 YP_004695519.1 PFAM: Methyltransferase type 11; KEGG: nit:NAL212_2034 arsenite methyltransferase YP_004695520.1 PFAM: Radical SAM; KEGG: nit:NAL212_2033 radical SAM domain-containing protein YP_004695521.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SNARE associated Golgi protein; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; KEGG: nit:NAL212_1630 dihydrolipoyl dehydrogenase YP_004695523.1 PFAM: Metallophosphoesterase; KEGG: pph:Ppha_1047 signal transduction protein with NACHT domain YP_004695524.1 PFAM: YcfA-like; KEGG: cyc:PCC7424_4650 YcfA family protein YP_004695525.1 PFAM: Uncharacterised protein family UPF0150; KEGG: neu:NE1268 hypothetical protein YP_004695526.1 PFAM: AMP-dependent synthetase/ligase; KEGG: dps:DP1202 acyl-CoA synthetase YP_004695527.1 KEGG: nit:NAL212_3095 bacterioferritin; TIGRFAM: Bacterioferritin; PFAM: Ferritin/Dps protein YP_004695528.1 PFAM: Aminotransferase, class I/II; KEGG: sat:SYN_00565 2-amino-3-ketobutyrate coenzyme A ligase YP_004695529.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: sat:SYN_00564 L-threonine 3-dehydrogenase YP_004695530.1 KEGG: nit:NAL212_2722 hypothetical protein YP_004695531.1 KEGG: azl:AZL_d03580 glycoside hydrolase; PFAM: Glycoside hydrolase, family 25; SMART: Glycoside hydrolase, family 25 subgroup YP_004695532.1 KEGG: net:Neut_0707 transcriptional regulator, LysR family protein YP_004695533.1 KEGG: nit:NAL212_1979 hypothetical protein YP_004695534.1 TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type, N-terminal; PFAM: RQC domain; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain; KEGG: nit:NAL212_1980 ATP-dependent DNA helicase RecQ; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain YP_004695536.1 KEGG: nit:NAL212_1981 glutamine synthetase, type I; TIGRFAM: Glutamine synthetase type I; PFAM: Glutamine synthetase, catalytic region; Glutamine synthetase, beta-Grasp YP_004695537.1 KEGG: nit:NAL212_1982 hypothetical protein YP_004695538.1 KEGG: nit:NAL212_1983 hypothetical protein YP_004695539.1 KEGG: nit:NAL212_1984 exodeoxyribonuclease III Xth; TIGRFAM: Exodeoxyribonuclease III xth; AP endonuclease, family 1; PFAM: Endonuclease/exonuclease/phosphatase YP_004695540.1 KEGG: mgm:Mmc1_3076 hypothetical protein YP_004695541.1 SMART: Helicase, ATP-dependent, c2 type; DEAD-like helicase, N-terminal; KEGG: nit:NAL212_1985 DEAD/DEAH box helicase domain-containing protein YP_004695542.1 KEGG: nit:NAL212_1986 hypothetical protein; HAMAP: Protein rnfH; PFAM: Uncharacterised protein family UPF0125 YP_004695543.1 PFAM: Streptomyces cyclase/dehydrase; KEGG: nit:NAL212_1987 cyclase/dehydrase YP_004695544.1 TIGRFAM: SsrA-binding protein; HAMAP: SsrA-binding protein; KEGG: nit:NAL212_1988 SsrA-binding protein; PFAM: SsrA-binding protein YP_004695545.1 KEGG: nit:NAL212_1989 heme A synthase; HAMAP: Heme A synthase; PFAM: Cytochrome oxidase assembly YP_004695546.1 KEGG: nit:NAL212_2313 two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core YP_004695547.1 KEGG: nit:NAL212_2312 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004695548.1 KEGG: nit:NAL212_2311 hypothetical protein YP_004695549.1 KEGG: nit:NAL212_1045 trans-hexaprenyltranstransferase; manually curated; PFAM: Polyprenyl synthetase YP_004695550.1 TIGRFAM: Ribosomal protein L21; HAMAP: Ribosomal protein L21; KEGG: nit:NAL212_1044 50S ribosomal protein L21; PFAM: Ribosomal protein L21 YP_004695551.1 TIGRFAM: Ribosomal protein L27; HAMAP: Ribosomal protein L27; KEGG: nit:NAL212_1043 50S ribosomal protein L27; PFAM: Ribosomal protein L27 YP_004695552.1 TIGRFAM: GTP-binding protein Obg/CgtA; HAMAP: GTPase obg; KEGG: nit:NAL212_1042 GTP-binding protein Obg/CgtA; PFAM: GTP1/OBG subdomain; GTP-binding protein, HSR1-related YP_004695553.1 SMART: Pseudouridine synthase/archaeosine transglycosylase; TIGRFAM: Glutamate 5-kinase, ProB-related; KEGG: nit:NAL212_1041 glutamate 5-kinase; HAMAP: Glutamate 5-kinase; PFAM: Aspartate/glutamate/uridylate kinase; Pseudouridine synthase/archaeosine transglycosylase YP_004695554.1 KEGG: nit:NAL212_1040 hypothetical protein YP_004695555.1 PFAM: NAD+ synthase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rrs:RoseRS_2679 NAD synthetase YP_004695556.1 KEGG: pbs:Plabr_1147 hypothetical protein YP_004695558.1 PFAM: Protein of unknown function DUF2130; KEGG: rfr:Rfer_0075 hypothetical protein YP_004695559.1 KEGG: nit:NAL212_2030 hypothetical protein YP_004695563.1 KEGG: net:Neut_1453 hypothetical protein YP_004695565.1 KEGG: bge:BC1002_6565 hypothetical protein YP_004695566.1 KEGG: bcm:Bcenmc03_6476 YadA domain-containing protein YP_004695567.1 KEGG: bav:BAV1474 phage protein YP_004695568.1 PFAM: Phage tail tape measure protein TP901, core region; KEGG: mms:mma_2719 tail length tape measure protein YP_004695569.1 PFAM: Protein of unknown function DUF1799, phage-related; KEGG: hypothetical protein YP_004695570.1 PFAM: Protein of unknown function DUF1789 YP_004695571.1 KEGG: bpy:Bphyt_1177 hypothetical protein YP_004695573.1 TIGRFAM: Phage protein, HK97, gp10; KEGG: bmj:BMULJ_04631 bacteriophage protein YP_004695574.1 TIGRFAM: Conserved hypothetical protein CHP01563; KEGG: phage head-tail adaptor YP_004695575.1 KEGG: net:Neut_1467 hypothetical protein YP_004695578.1 KEGG: mpt:Mpe_A0539 hypothetical protein YP_004695579.1 KEGG: dbr:Deba_2547 phage major capsid protein, HK97 family; TIGRFAM: Phage major capsid protein, HK97; PFAM: Phage major capsid protein, HK97 YP_004695580.1 KEGG: dvm:DvMF_1656 phage prohead protease, HK97 family; TIGRFAM: Peptidase U35, phage prohead HK97; PFAM: Peptidase U35, phage prohead HK97 YP_004695581.1 KEGG: dbr:Deba_2549 phage portal protein, HK97 family; TIGRFAM: Phage portal protein, HK97; PFAM: Phage portal protein YP_004695582.1 PFAM: Phage Terminase; KEGG: dbr:Deba_2550 terminase YP_004695583.1 KEGG: dvu:DVU1504 terminase small subunit; TIGRFAM: Phage terminase, small subunit, , P27; PFAM: Phage terminase, small subunit, , P27 YP_004695584.1 manually curated; PFAM: HNH endonuclease; KEGG: bss:BSUW23_09635 HNH endonuclease; SMART: HNH nuclease YP_004695585.1 KEGG: net:Neut_1475 hypothetical protein YP_004695588.1 PFAM: Virulence-associated E; KEGG: net:Neut_1478 virulence-associated E family protein YP_004695592.1 KEGG: bmj:BMULJ_04653 bacteriophage protein YP_004695594.1 KEGG: abm:ABSDF1321 hypothetical protein YP_004695595.1 KEGG: ppg:PputGB1_3443 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004695596.1 KEGG: nit:NAL212_2567 nuclease (SNase domain-containing protein); PFAM: Staphylococcal nuclease (SNase-like); SMART: Staphylococcal nuclease (SNase-like) YP_004695597.1 KEGG: sit:TM1040_1659 hypothetical protein YP_004695601.1 KEGG: rsc:RCFBP_20372 hypothetical protein YP_004695602.1 PFAM: Protein of unknown function DUF2303; KEGG: rsc:RCFBP_20373 hypothetical protein YP_004695603.1 KEGG: tkm:TK90_2683 hypothetical protein YP_004695605.1 KEGG: srt:Srot_1186 hypothetical protein YP_004695607.1 PFAM: AntA/AntB antirepressor; KEGG: ect:ECIAI39_2659 phage anti-repressor protein YP_004695610.1 KEGG: nit:NAL212_0698 single-strand binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding YP_004695612.1 PFAM: Integrase, catalytic core, phage; KEGG: meh:M301_0128 integrase YP_004695613.1 KEGG: ote:Oter_2237 band 7 protein; PFAM: Band 7 protein; SMART: Band 7 protein YP_004695614.1 KEGG: nit:NAL212_1473 hypothetical protein YP_004695615.1 KEGG: kko:Kkor_1038 hypothetical protein YP_004695616.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: nit:NAL212_1471 OmpA/MotB domain-containing protein YP_004695617.1 SMART: ATPase, AAA+ type, core; KEGG: nit:NAL212_1470 type II secretion system protein E YP_004695618.1 TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial; KEGG: nit:NAL212_1883 PEP motif anchor domain-containing protein YP_004695619.1 KEGG: nit:NAL212_1947 hypothetical protein YP_004695620.1 KEGG: nit:NAL212_2797 hypothetical protein YP_004695621.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: pca:Pcar_0660 cytosine/adenosine deaminase YP_004695622.1 KEGG: nit:NAL212_0997 hypothetical protein YP_004695623.1 PFAM: Cation/H+ exchanger; Regulator of K+ conductance, N-terminal; KEGG: nit:NAL212_0996 sodium/hydrogen exchanger YP_004695624.1 KEGG: nit:NAL212_0995 hypothetical protein YP_004695625.1 KEGG: nit:NAL212_0994 hypothetical protein YP_004695626.1 KEGG: nit:NAL212_0993 NRAMP-family transporter YP_004695627.1 KEGG: nit:NAL212_0992 xenobiotic-transporting ATPase; PFAM: ABC transporter-like; ABC transporter, transmembrane region; SMART: ATPase, AAA+ type, core YP_004695628.1 TIGRFAM: flagellar motor stator protein MotA; KEGG: nit:NAL212_0991 flagellar motor stator protein MotA YP_004695629.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: nit:NAL212_0990 OmpA/MotB domain-containing protein YP_004695630.1 KEGG: nit:NAL212_0989 hypothetical protein YP_004695631.1 KEGG: nit:NAL212_0988 cysteinyl-tRNA synthetase; TIGRFAM: Cysteinyl-tRNA synthetase, class Ia; PFAM: Cysteinyl-tRNA synthetase, class Ia, N-terminal; Cysteinyl-tRNA synthetase, class Ia, DALR YP_004695632.1 PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; KEGG: nit:NAL212_0987 peptidylprolyl isomerase YP_004695633.1 PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; KEGG: nit:NAL212_0986 peptidylprolyl isomerase YP_004695634.1 KEGG: nit:NAL212_0985 O-succinylhomoserine sulfhydrylase; TIGRFAM: O-succinylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YP_004695635.1 KEGG: nit:NAL212_0984 amidophosphoribosyltransferase; TIGRFAM: Amidophosphoribosyl transferase; PFAM: Glutamine amidotransferase, class-II; Phosphoribosyltransferase YP_004695636.1 PFAM: Colicin V production protein; KEGG: nit:NAL212_0983 colicin V production protein YP_004695637.1 PFAM: Sporulation/cell division region, bacteria; KEGG: nit:NAL212_0982 sporulation domain-containing protein YP_004695638.1 KEGG: nit:NAL212_0981 FolC bifunctional protein; TIGRFAM: Folylpolyglutamate synthetase; PFAM: Mur ligase, central; Mur ligase, C-terminal YP_004695639.1 TIGRFAM: Acetyl-CoA carboxylase carboxyl transferase, beta subunit; HAMAP: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; KEGG: nit:NAL212_0980 acetyl-CoA carboxylase, carboxyl transferase, beta subunit; PFAM: Carboxyl transferase YP_004695640.1 TIGRFAM: Tryptophan synthase, alpha chain; HAMAP: Tryptophan synthase, alpha chain; KEGG: nit:NAL212_0979 tryptophan synthase, alpha subunit; PFAM: Tryptophan synthase, alpha chain YP_004695641.1 TIGRFAM: Tryptophan synthase, beta chain; HAMAP: Tryptophan synthase beta chain; KEGG: nit:NAL212_0978 tryptophan synthase beta chain; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit YP_004695642.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: nit:NAL212_0977 phosphoribosylanthranilate isomerase YP_004695643.1 TIGRFAM: Pseudouridine synthase I, TruA; HAMAP: Pseudouridine synthase I, TruA; KEGG: nit:NAL212_0976 tRNA pseudouridine synthase A; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain YP_004695644.1 TIGRFAM: Motility protein FimV, N-terminal; Motility protein FimV, C-terminal; KEGG: nit:NAL212_0975 FimV N-terminal domain YP_004695645.1 KEGG: nit:NAL212_0974 aspartate-semialdehyde dehydrogenase; TIGRFAM: Aspartate-semialdehyde dehydrogenase, proteobacteria; PFAM: Semialdehyde dehydrogenase, dimerisation region; Semialdehyde dehydrogenase, NAD-binding YP_004695646.1 TIGRFAM: Isopropylmalate dehydrogenase; HAMAP: Isopropylmalate dehydrogenase; KEGG: nit:NAL212_0973 3-isopropylmalate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase YP_004695647.1 TIGRFAM: 3-isopropylmalate dehydratase, small subunit region; HAMAP: 3-isopropylmalate dehydratase, small subunit region; KEGG: nit:NAL212_0972 3-isopropylmalate dehydratase, small subunit; PFAM: Aconitase A/isopropylmalate dehydratase small subunit, swivel YP_004695648.1 TIGRFAM: 3-isopropylmalate dehydratase, large subunit region; HAMAP: 3-isopropylmalate dehydratase, large subunit region; KEGG: nit:NAL212_0971 3-isopropylmalate dehydratase, large subunit; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha YP_004695649.1 PFAM: Major facilitator superfamily MFS-1; KEGG: nit:NAL212_0970 major facilitator transporter YP_004695650.1 PFAM: Rubrerythrin; KEGG: nit:NAL212_0969 rubrerythrin YP_004695651.1 KEGG: nit:NAL212_0968 hypothetical protein YP_004695652.1 PFAM: Protein of unknown function CNP1-like; KEGG: nit:NAL212_0967 hypothetical protein YP_004695653.1 KEGG: PA14 domain-containing protein YP_004695654.1 KEGG: tkm:TK90_1567 transcriptional regulator, AbrB family; TIGRFAM: Transcription regulator AbrB; PFAM: Transcription regulator AbrB/SpoV, predicted YP_004695655.1 PFAM: PilT protein, N-terminal; KEGG: tkm:TK90_1566 PilT protein domain protein YP_004695657.1 KEGG: nit:NAL212_0603 transposase IS200-family protein YP_004695658.1 KEGG: eba:ebB104 transposase, fragment YP_004695659.1 KEGG: afe:Lferr_1426 integrase catalytic subunit; manually curated; PFAM: Integrase, catalytic core YP_004695660.1 PFAM: Transposase IS3/IS911; KEGG: net:Neut_2500 transposase IS3/IS911 YP_004695661.1 PFAM: Ammonium transporter; KEGG: nit:NAL212_0965 ammonium transporter YP_004695662.1 PFAM: Helix-turn-helix, HxlR type; KEGG: nit:NAL212_0964 transcriptional regulator, HxlR family YP_004695663.1 KEGG: nit:NAL212_0963 glutathione S-transferase YP_004695665.1 KEGG: nit:NAL212_0461 Amylosucrase; PFAM: Glycosyl hydrolase, family 13, catalytic region; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region YP_004695666.1 TIGRFAM: Sucrose-phosphate synthase, glycosyltransferase region; HAD-superfamily hydrolase, subfamily IIB; Sucrose phosphate synthase, sucrose phosphatase-like region; KEGG: nit:NAL212_0460 sucrose-phosphate synthase; PFAM: Sucrose-6F-phosphate phosphohydrolase, plant/cyanobacteria; Glycosyl transferase, group 1 YP_004695667.1 PFAM: Carbohydrate/purine kinase; KEGG: nit:NAL212_0459 PfkB domain-containing protein YP_004695668.1 PFAM: HPP; KEGG: nmu:Nmul_A0073 hypothetical protein YP_004695669.1 KEGG: nit:NAL212_2793 hypothetical protein YP_004695670.1 PFAM: Transposase IS3/IS911; KEGG: gca:Galf_0832 transposase IS3/IS911 family protein YP_004695671.1 PFAM: Integrase, catalytic core; KEGG: rso:RSp0548 ISRSO8-transposase orfB protein YP_004695672.1 PFAM: Transposase, IS4-like; KEGG: psa:PST_2220 transposase YP_004695673.1 PFAM: Glucodextranase N; Glycoside hydrolase 15-related; KEGG: afr:AFE_2224 glycosyl hydrolase, family 15 YP_004695674.1 KEGG: afw:Anae109_2025 transketolase; TIGRFAM: Transketolase, bacterial-like; PFAM: Transketolase, N-terminal; Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal YP_004695675.1 PFAM: ROK; KEGG: nha:Nham_2098 polyphosphate glucokinase YP_004695676.1 KEGG: rfr:Rfer_4034 glucose-6-phosphate 1-dehydrogenase; TIGRFAM: Glucose-6-phosphate dehydrogenase; PFAM: Glucose-6-phosphate dehydrogenase YP_004695677.1 KEGG: fri:FraEuI1c_1222 6-phosphogluconate dehydrogenase, decarboxylating; TIGRFAM: 6-phosphogluconate dehydrogenase related protein; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase, C-terminal YP_004695678.1 KEGG: nmu:Nmul_A2165 hypothetical protein YP_004695679.1 KEGG: nit:NAL212_2282 hypothetical protein YP_004695680.1 KEGG: meh:M301_1660 hypothetical protein YP_004695681.1 KEGG: meh:M301_1661 hypothetical protein YP_004695682.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; PAS fold-3; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; KEGG: nit:NAL212_2281 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region, ATPase-like; PAS; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004695683.1 PFAM: Transposase, IS4-like; KEGG: nit:NAL212_3145 IS5 family transposase YP_004695684.1 KEGG: nit:NAL212_2284 nitrogen regulatory protein P-II YP_004695685.1 PFAM: Protein of unknown function DUF897; KEGG: nit:NAL212_2283 hypothetical protein YP_004695687.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; PAS fold-3; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; KEGG: nit:NAL212_2281 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS YP_004695688.1 KEGG: nit:NAL212_2280 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal YP_004695689.1 PFAM: Major intrinsic protein; KEGG: nit:NAL212_1624 major intrinsic protein YP_004695690.1 TIGRFAM: RNA helicase, ATP-dependent DEAH box, HrpA type; PFAM: Helicase-associated region; DNA/RNA helicase, C-terminal; Domain of unknown function DUF1605; KEGG: nit:NAL212_2554 ATP-dependent helicase HrpA; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004695691.1 PFAM: Transposase, IS116/IS110/IS902; Transposase, IS111A/IS1328/IS1533; KEGG: nhl:Nhal_1988 transposase IS116/IS110/IS902 family protein YP_004695692.1 manually curated; KEGG: pph:Ppha_2823 hypothetical protein YP_004695693.1 KEGG: nhl:Nhal_0251 protein of unknown function DUF1568 YP_004695694.1 KEGG: swd:Swoo_3928 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP03549; YcaO-like; PFAM: YcaO-like; Peroxiredoxin, OsmC-like protein YP_004695695.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: nit:NAL212_2027 transcriptional regulator, LysR family YP_004695696.1 PFAM: Pirin, N-terminal; Pirin, C-terminal; KEGG: nit:NAL212_2026 pirin domain-containing protein YP_004695697.1 PFAM: DoxX; KEGG: neu:NE1546 hypothetical protein YP_004695698.1 KEGG: nit:NAL212_2002 succinate dehydrogenase, cytochrome b556 subunit; TIGRFAM: Succinate dehydrogenase, cytochrome b556 subunit; PFAM: Succinate dehydrogenase, cytochrome b subunit YP_004695699.1 KEGG: nmu:Nmul_A0862 succinate dehydrogenase, cytochrome b subunit; TIGRFAM: Succinate dehydrogenase, hydrophobic membrane anchor; PFAM: Succinate dehydrogenase, cytochrome b subunit YP_004695700.1 KEGG: nit:NAL212_2000 succinate dehydrogenase, flavoprotein subunit; TIGRFAM: Succinate dehydrogenase, flavoprotein subunit; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal YP_004695701.1 KEGG: sme:SM_b20914 hypothetical protein YP_004695702.1 PFAM: UspA; KEGG: bav:BAV3184 universal stress protein YP_004695703.1 KEGG: hch:HCH_06855 cation transport ATPase; TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: ATPase, P-type, ATPase-associated region; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase; ATPase, P-type cation-transporter, C-terminal YP_004695704.1 PFAM: UspA; KEGG: app:CAP2UW1_3847 UspA domain-containing protein YP_004695705.1 KEGG: tsa:AciPR4_2812 hypothetical protein YP_004695706.1 PFAM: UspA; KEGG: app:CAP2UW1_0552 UspA domain-containing protein YP_004695707.1 KEGG: nit:NAL212_2578 nuclease (SNase domain-containing protein); PFAM: Staphylococcal nuclease (SNase-like); SMART: Staphylococcal nuclease (SNase-like) YP_004695708.1 KEGG: cpb:Cphamn1_2069 amino acid carrier protein; TIGRFAM: Sodium:alanine symporter; PFAM: Sodium:alanine symporter YP_004695709.1 KEGG: nit:NAL212_2577 sulfate-transporting ATPase; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004695710.1 KEGG: nit:NAL212_2576 hypothetical protein; TIGRFAM: Protein of unknown function DUF140; PFAM: Protein of unknown function DUF140 YP_004695711.1 PFAM: Mammalian cell entry related; KEGG: nit:NAL212_2575 mammalian cell entry related domain-containing protein YP_004695712.1 PFAM: Toluene tolerance; KEGG: nit:NAL212_2574 toluene tolerance family protein YP_004695713.1 PFAM: Sulphate transporter/antisigma-factor antagonist STAS; KEGG: nit:NAL212_2573 sulfate transporter/antisigma-factor antagonist STAS YP_004695714.1 KEGG: nit:NAL212_2572 sulfate-transporting ATPase; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004695715.1 PFAM: ABC-2 type transporter; KEGG: nit:NAL212_2571 ABC-2 type transporter YP_004695716.1 PFAM: BolA-like protein; KEGG: nit:NAL212_2570 BolA family protein YP_004695717.1 KEGG: nit:NAL212_2569 heat shock protein DnaJ domain-containing protein; PFAM: Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal YP_004695718.1 PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: nit:NAL212_2568 glutathione S-transferase domain YP_004695719.1 KEGG: psl:Psta_2573 hypothetical protein YP_004695720.1 KEGG: nde:NIDE1370 hypothetical protein YP_004695721.1 PFAM: Transposase, IS116/IS110/IS902; Transposase, IS111A/IS1328/IS1533; KEGG: nhl:Nhal_1988 transposase IS116/IS110/IS902 family protein YP_004695722.1 PFAM: SEC-C motif; KEGG: hypothetical protein YP_004695723.1 PFAM: Transposase, IS116/IS110/IS902; Transposase, IS111A/IS1328/IS1533; KEGG: nhl:Nhal_1988 transposase IS116/IS110/IS902 family protein YP_004695724.1 PFAM: Peptidase M1, membrane alanine aminopeptidase, N-terminal; KEGG: nit:NAL212_0946 peptidase M1 membrane alanine aminopeptidase YP_004695725.1 KEGG: nit:NAL212_0945 hypothetical protein; PFAM: Protein of unknown function DUF399; SMART: PDZ/DHR/GLGF YP_004695726.1 TIGRFAM: Phosphoribosylformylglycinamidine synthase, eukaryote/proteobacteria; HAMAP: Phosphoribosylformylglycinamidine synthase; KEGG: nit:NAL212_0944 phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein, C-terminal; AIR synthase related protein YP_004695727.1 KEGG: nit:NAL212_0943 YjeF-like protein; TIGRFAM: Uncharacterised protein family, carbohydrate kinase-related; YjeF-related protein, N-terminal; PFAM: YjeF-related protein, N-terminal; Uncharacterised protein family, carbohydrate kinase-related YP_004695728.1 PFAM: ROK; KEGG: dar:Daro_0037 N-acetylglucosamine kinase YP_004695729.1 KEGG: nmu:Nmul_A2026 hypothetical protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_004695730.1 KEGG: tbd:Tbd_1584 hypothetical protein YP_004695731.1 PFAM: Radical SAM; KEGG: nit:NAL212_1536 radical SAM domain-containing protein YP_004695732.1 KEGG: nit:NAL212_1535 AMMECR1 domain-containing protein; TIGRFAM: AMMECR1; PFAM: AMMECR1 YP_004695733.1 PFAM: UPF0103/Mediator of ErbB2-driven cell motility (Memo), related; KEGG: nit:NAL212_1534 hypothetical protein YP_004695734.1 KEGG: sat:SYN_02040 cytoplasmic protein YP_004695735.1 KEGG: nit:NAL212_1533 lipase class 3 YP_004695736.1 KEGG: meh:M301_2279 protein of unknown function DUF1555; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_004695737.1 PFAM: ApbE-like lipoprotein; KEGG: nit:NAL212_1532 ApbE family lipoprotein YP_004695738.1 KEGG: nit:NAL212_1531 hypothetical protein YP_004695739.1 KEGG: nit:NAL212_1530 arginine decarboxylase YP_004695740.1 PFAM: Redoxin; KEGG: nit:NAL212_0020 redoxin domain-containing protein YP_004695741.1 KEGG: nit:NAL212_1528 hypothetical protein YP_004695742.1 KEGG: nit:NAL212_1527 hypothetical protein YP_004695743.1 KEGG: nit:NAL212_1527 hypothetical protein YP_004695744.1 KEGG: nit:NAL212_1814 hypothetical protein YP_004695745.1 KEGG: nit:NAL212_1816 DNA repair protein RecN; TIGRFAM: DNA recombination/repair protein RecN; PFAM: RecF/RecN/SMC protein, N-terminal YP_004695746.1 KEGG: nit:NAL212_1817 ATP-NAD/AcoX kinase; HAMAP: inorganic polyphosphate/ATP-NAD kinase; PFAM: ATP-NAD/AcoX kinase YP_004695747.1 TIGRFAM: Negative regulator of class I heat shock protein; HAMAP: Negative regulator of class I heat shock protein; KEGG: nit:NAL212_1818 heat-inducible transcription repressor HrcA; PFAM: Negative regulator of class I heat shock protein YP_004695748.1 TIGRFAM: Ferrochelatase; HAMAP: Ferrochelatase; KEGG: nit:NAL212_1819 ferrochelatase; PFAM: Ferrochelatase YP_004695749.1 KEGG: nit:NAL212_1820 hypothetical protein YP_004695750.1 KEGG: nit:NAL212_1245 hypothetical protein YP_004695751.1 PFAM: Peptidase M4, propeptide, PepSY; KEGG: nit:NAL212_1246 peptidase YP_004695752.1 KEGG: nit:NAL212_1247 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004695753.1 KEGG: nit:NAL212_1248 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004695754.1 PFAM: Uncharacterised protein family UPF0016; KEGG: nit:NAL212_1251 hypothetical protein YP_004695755.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS fold-3; PAS fold; PAS fold-4; KEGG: slt:Slit_0879 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAC motif; PAS YP_004695756.1 KEGG: ddf:DEFDS_0291 hypothetical protein YP_004695757.1 KEGG: bal:BACI_pCIXO100200 hypothetical protein YP_004695758.1 KEGG: nhl:Nhal_3964 N-6 DNA methylase YP_004695759.1 PFAM: Integrase, catalytic core, phage; KEGG: bxe:Bxe_A2541 CP4-like integrase YP_004695760.1 KEGG: har:HEAR3024 DNA-binding; repressor; transcription; transcription regulation YP_004695762.1 PFAM: Prophage CP4-57 regulatory; KEGG: nmu:Nmul_A2182 phage transcriptional regulator, AlpA YP_004695764.1 KEGG: rpi:Rpic_2741 hypothetical protein YP_004695765.1 PFAM: Protein of unknown function DUF927; KEGG: pfl:PFL_4979 hypothetical protein YP_004695767.1 TIGRFAM: Ribonuclease R, bacterial; Ribonuclease II/ribonuclease R, bacteria; PFAM: Ribonuclease II/R; Ribonuclease B, OB region N-terminal; Ribosomal protein S1, RNA binding domain; KEGG: nit:NAL212_1357 ribonuclease R; SMART: Cold shock protein YP_004695768.1 KEGG: nit:NAL212_1356 RNA methyltransferase, TrmH family, group 3; TIGRFAM: RNA methyltransferase TrmH, group 3; PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding YP_004695769.1 TIGRFAM: Arginyl-tRNA synthetase, class Ic; HAMAP: Arginyl-tRNA synthetase, class Ic; KEGG: nit:NAL212_1355 arginyl-tRNA synthetase YP_004695770.1 PFAM: Sporulation/cell division region, bacteria; KEGG: nit:NAL212_1354 sporulation domain-containing protein YP_004695771.1 PFAM: DSBA oxidoreductase; KEGG: nit:NAL212_1353 DsbA oxidoreductase YP_004695772.1 TIGRFAM: Peptide methionine sulphoxide reductase MsrA; HAMAP: Peptide methionine sulphoxide reductase MsrA; KEGG: nit:NAL212_1352 peptide methionine sulfoxide reductase; PFAM: Peptide methionine sulphoxide reductase MsrA YP_004695773.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: nit:NAL212_1351 signal transduction protein YP_004695774.1 SMART: Guanylate kinase/L-type calcium channel region; TIGRFAM: Guanylate kinase, sub-group; KEGG: nit:NAL212_1350 guanylate kinase; HAMAP: Guanylate kinase, sub-group; PFAM: Guanylate kinase YP_004695775.1 TIGRFAM: DNA-directed RNA polymerase, omega subunit; HAMAP: DNA-directed RNA polymerase, omega subunit; KEGG: nit:NAL212_1349 DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6 YP_004695776.1 TIGRFAM: RelA/SpoT protein; PFAM: RelA/SpoT; Metal-dependent phosphohydrolase, HD region, subdomain; TGS; Amino acid-binding ACT; KEGG: nit:NAL212_1348 (p)ppGpp synthetase I, SpoT/RelA; SMART: Metal-dependent phosphohydrolase, HD region YP_004695777.1 PFAM: Cytochrome c assembly protein; KEGG: nit:NAL212_1457 cytochrome c assembly protein YP_004695778.1 TIGRFAM: Signal recognition particle, SRP; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; Signal recognition particle, SRP54 subunit, M-domain; KEGG: nit:NAL212_1456 signal recognition particle protein; SMART: ATPase, AAA+ type, core YP_004695779.1 TIGRFAM: DeoxyUTP pyrophosphatase domain, subfamily 1,; HAMAP: Deoxyuridine 5'-triphosphate nucleotidohydrolase; KEGG: nit:NAL212_1454 deoxyuridine 5'-triphosphate nucleotidohydrolase; PFAM: DeoxyUTP pyrophosphatase domain YP_004695780.1 KEGG: nit:NAL212_1453 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; TIGRFAM: Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: DNA/pantothenate metabolism flavoprotein, C-terminal; Flavoprotein YP_004695781.1 KEGG: nit:NAL212_1452 DNA repair protein RadC; TIGRFAM: DNA repair, RadC-like; PFAM: DNA repair, RadC-like YP_004695782.1 TIGRFAM: Ribosomal protein L28; HAMAP: Ribosomal protein L28; KEGG: nit:NAL212_1451 50S ribosomal protein L28; PFAM: Ribosomal protein L28 YP_004695783.1 TIGRFAM: Ribosomal protein L33; HAMAP: Ribosomal protein L33; KEGG: net:Neut_0780 50S ribosomal protein L33; PFAM: Ribosomal protein L33 YP_004695784.1 PFAM: Fatty acid desaturase, type 1; KEGG: nit:NAL212_1449 fatty acid desaturase YP_004695785.1 KEGG: nit:NAL212_1448 pseudouridine synthase Rsu; TIGRFAM: Pseudouridine synthase, RsuA and RluB/E/F; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F YP_004695786.1 PFAM: Phosphoglycerate mutase; KEGG: nit:NAL212_1447 phosphohistidine phosphatase, SixA YP_004695787.1 TIGRFAM: Conserved hypothetical protein CHP00251; HAMAP: Protein of unknown function DUF167; KEGG: nit:NAL212_1446 hypothetical protein; PFAM: Protein of unknown function DUF167 YP_004695788.1 PFAM: Protein of unknown function YGGT; KEGG: nit:NAL212_1445 hypothetical protein YP_004695789.1 KEGG: nit:NAL212_1444 pyrroline-5-carboxylate reductase; TIGRFAM: Delta 1-pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent YP_004695790.1 TIGRFAM: DNA glycosylase/AP lyase; HAMAP: Formamidopyrimidine-DNA glycosylase; KEGG: nit:NAL212_1443 formamidopyrimidine-DNA glycosylase; PFAM: DNA glycosylase/AP lyase, catalytic domain; DNA glycosylase/AP lyase, H2TH DNA-binding YP_004695791.1 manually curated; KEGG: nit:NAL212_1442 hypothetical protein YP_004695792.1 PFAM: ABC-type uncharacterised transport system; KEGG: nit:NAL212_1441 ABC transporter YP_004695793.1 KEGG: nit:NAL212_1440 ABC-2 type transport system permease YP_004695794.1 KEGG: nit:NAL212_1439 ABC transporter-like protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004695795.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: nit:NAL212_1438 OmpA/MotB domain-containing protein YP_004695796.1 KEGG: nit:NAL212_1437 S-adenosylhomocysteine deaminase; HAMAP: 5-methylthioadenosine/S-adenosylhomocysteine deaminase; PFAM: Amidohydrolase 1 YP_004695797.1 TIGRFAM: Ubiquinone biosynthesis O-methyltransferase; HAMAP: 3-demethylubiquinone-9 3-methyltransferase; KEGG: nit:NAL212_1436 ubiquinone biosynthesis O-methyltransferase; PFAM: Methyltransferase type 11 YP_004695798.1 KEGG: nit:NAL212_1435 phosphoglycolate phosphatase; TIGRFAM: 2-phosphoglycolate phosphatase, prokaryotic; HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase YP_004695799.1 PFAM: Replication endonuclease, probable, phage; KEGG: nit:NAL212_1434 replication protein A YP_004695800.1 KEGG: nit:NAL212_1433 hypothetical protein YP_004695801.1 KEGG: nit:NAL212_1432 hypothetical protein YP_004695802.1 PFAM: HTH transcriptional regulator, MerR; KEGG: nit:NAL212_1431 hypothetical protein YP_004695803.1 PFAM: Integrase, catalytic core, phage; KEGG: nit:NAL212_1430 hypothetical protein YP_004695804.1 PFAM: Protein of unknown function DUF2136; KEGG: nit:NAL212_1429 hypothetical protein YP_004695805.1 PFAM: Helix-turn-helix type 3; KEGG: neu:NE1587 helix-hairpin-helix DNA-binding motif-containing protein YP_004695806.1 KEGG: hypothetical protein YP_004695809.1 PFAM: Glutaredoxin; KEGG: amr:AM1_3463 membrane associated glutaredoxin YP_004695810.1 PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, N-terminal TPP binding region; Thiamine pyrophosphate enzyme, central region; KEGG: nit:NAL212_0932 pyruvate dehydrogenase (cytochrome) YP_004695811.1 KEGG: gur:Gura_2402 hypothetical protein YP_004695812.1 KEGG: bpy:Bphyt_0354 hypothetical protein YP_004695813.1 PFAM: CsbD-like; KEGG: nmu:Nmul_A1602 CsbD-like YP_004695814.1 PFAM: Entericidin EcnAB; KEGG: nmu:Nmul_A1920 entericidin EcnAB YP_004695815.1 PFAM: Transposase IS3/IS911; KEGG: net:Neut_2500 transposase IS3/IS911 YP_004695816.1 KEGG: afe:Lferr_1426 integrase catalytic subunit; manually curated; PFAM: Integrase, catalytic core YP_004695817.1 KEGG: afe:Lferr_1426 integrase catalytic subunit; manually curated; PFAM: Integrase, catalytic core YP_004695818.1 KEGG: net:Neut_2500 transposase IS3/IS911; manually curated; PFAM: Transposase IS3/IS911 YP_004695819.1 KEGG: nit:NAL212_2601 transposase IS200-family protein YP_004695820.1 PFAM: Domain of unknown function DUF1994; KEGG: abo:ABO_2551 hypothetical protein YP_004695821.1 PFAM: Excinuclease ABC, C subunit, N-terminal; KEGG: gpb:HDN1F_24460 predicted endonuclease containing URI domain YP_004695822.1 KEGG: nit:NAL212_2279 hypothetical protein YP_004695823.1 KEGG: nit:NAL212_2278 hypothetical protein YP_004695824.1 KEGG: nit:NAL212_0005 cation diffusion facilitator family transporter; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein YP_004695827.1 PFAM: Protein of unknown function DUF81; KEGG: nit:NAL212_2587 hypothetical protein YP_004695828.1 KEGG: neu:NE2567 hypothetical protein; TIGRFAM: Beta-lactamase hydrolase-like; PFAM: Beta-lactamase hydrolase-like; Lycopene beta/epsilon cyclase YP_004695829.1 KEGG: neu:NE2568 ArsR family regulatory protein; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004695830.1 PFAM: Protein of unknown function DUF395, YeeE/YedE; KEGG: nmu:Nmul_A1684 YeeE/YedE YP_004695831.1 PFAM: Protein of unknown function DUF395, YeeE/YedE; KEGG: net:Neut_2529 protein of unknown function DUF395, YeeE/YedE YP_004695832.1 KEGG: neu:NE2571 metallo-beta-lactamase superfamily protein YP_004695833.1 KEGG: reu:Reut_A1185 ATPase, E1-E2 type; TIGRFAM: ATPase, P-type, plasma-membrane proton-efflux; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: ATPase, P-type, ATPase-associated region; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase; ATPase, P-type cation-transporter, C-terminal YP_004695834.1 KEGG: net:Neut_1719 transposase IS3/IS911 family protein YP_004695835.1 KEGG: nit:NAL212_0064 hypothetical protein YP_004695836.1 KEGG: nit:NAL212_0063 IS66 Orf2 family protein; manually curated; PFAM: Transposase (), IS66 Orf2 like YP_004695837.1 KEGG: nit:NAL212_0062 transposase IS66; manually curated; PFAM: Transposase, IS66 YP_004695838.1 KEGG: nit:NAL212_0951 hypothetical protein YP_004695840.1 KEGG: scl:sce3476 hypothetical protein YP_004695841.1 PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: nit:NAL212_2526 peptidase S24/S26A/S26B, conserved region YP_004695843.1 PFAM: Transposase, IS4-like; KEGG: tgr:Tgr7_1308 ISRSO18-transposase YP_004695844.1 KEGG: nit:NAL212_0154 ATPase, P-type (transporting), HAD superfamily, subfamily IC YP_004695845.1 PFAM: Methyltransferase type 11; KEGG: nit:NAL212_0155 methyltransferase type 11 YP_004695846.1 KEGG: nit:NAL212_0156 heavy metal efflux pump, CzcA family; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein YP_004695847.1 TIGRFAM: Secretion protein HlyD; KEGG: nit:NAL212_0157 RND family efflux transporter MFP subunit YP_004695848.1 PFAM: Outer membrane efflux protein; KEGG: nit:NAL212_0158 outer membrane efflux protein YP_004695849.1 KEGG: nit:NAL212_0160 hypothetical protein YP_004695850.1 KEGG: nit:NAL212_0216 TPR repeat-containing protein YP_004695851.1 TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; KEGG: nit:NAL212_0215 transcriptional regulator, MerR family; SMART: HTH transcriptional regulator, MerR YP_004695852.1 KEGG: nit:NAL212_0214 hypothetical protein YP_004695853.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: nmu:Nmul_A0101 short-chain dehydrogenase/reductase SDR YP_004695854.1 PFAM: CoA-binding; KEGG: rfr:Rfer_1518 CoA-binding YP_004695855.1 TIGRFAM: RNA 3'-terminal phosphate cyclase, subgroup; HAMAP: RNA 3'-terminal phosphate cyclase predicted; KEGG: nmu:Nmul_A2158 RNA 3'-terminal-phosphate cyclase; PFAM: RNA 3'-terminal phosphate cyclase-like; RNA 3'-terminal phosphate cyclase, insert region YP_004695856.1 PFAM: Uncharacterised protein family UPF0248; KEGG: tbd:Tbd_1579 hypothetical protein YP_004695857.1 KEGG: afr:AFE_2093 hypothetical protein YP_004695858.1 KEGG: nit:NAL212_0062 transposase IS66; manually curated; PFAM: Transposase, IS66 YP_004695859.1 KEGG: nit:NAL212_0063 IS66 Orf2 family protein; manually curated; PFAM: Transposase (), IS66 Orf2 like YP_004695860.1 KEGG: nit:NAL212_0064 hypothetical protein YP_004695861.1 PFAM: Transposase, IS4-like; KEGG: bxe:Bxe_C1199 hypothetical protein YP_004695862.1 KEGG: nmu:Nmul_A0025 TraR/DksA family transcriptional regulator YP_004695863.1 PFAM: FecR protein; KEGG: nit:NAL212_1117 FecR protein YP_004695864.1 PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A; Sporulation/cell division region, bacteria; KEGG: nit:NAL212_1397 serine-type D-Ala-D-Ala carboxypeptidase YP_004695865.1 KEGG: gvi:gll0213 hypothetical protein; PFAM: Cell surface receptor IPT/TIG; SMART: Cell surface receptor IPT/TIG YP_004695866.1 KEGG: neu:NE1865 CheW-like domain-containing protein; PFAM: CheW-like protein; SMART: CheW-like protein YP_004695867.1 KEGG: nit:NAL212_0266 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004695868.1 KEGG: neu:NE1865 CheW-like domain-containing protein; PFAM: CheW-like protein; SMART: CheW-like protein YP_004695869.1 KEGG: nit:NAL212_0266 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004695870.1 KEGG: nit:NAL212_0265 CheW protein; PFAM: CheW-like protein; SMART: CheW-like protein YP_004695871.1 KEGG: nit:NAL212_0266 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling YP_004695872.1 PFAM: Transposase IS3/IS911; KEGG: gca:Galf_0832 transposase IS3/IS911 family protein YP_004695873.1 PFAM: Integrase, catalytic core; KEGG: rso:RSp0548 ISRSO8-transposase orfB protein YP_004695874.1 KEGG: nit:NAL212_0266 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004695875.1 KEGG: nit:NAL212_0265 CheW protein; PFAM: CheW-like protein; SMART: CheW-like protein YP_004695876.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nit:NAL212_0264 glyoxalase/bleomycin resistance protein/dioxygenase YP_004695877.1 PFAM: Peptidase M48, Ste24p; KEGG: nit:NAL212_0263 peptidase M48 Ste24p YP_004695878.1 PFAM: Dodecin flavoprotein; KEGG: nit:NAL212_0262 hypothetical protein YP_004695879.1 KEGG: fbl:Fbal_0566 hypothetical protein YP_004695880.1 TIGRFAM: Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial; KEGG: nit:NAL212_0261 leucyl-tRNA synthetase YP_004695881.1 KEGG: nit:NAL212_0260 rare lipoprotein B YP_004695882.1 KEGG: nit:NAL212_0259 DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta YP_004695885.1 PFAM: Transposase, IS4-like; KEGG: nit:NAL212_3145 IS5 family transposase YP_004695887.1 KEGG: nit:NAL212_0438 methionine synthase; TIGRFAM: 5-methyltetrahydrofolate--homocysteine methyltransferase; PFAM: Homocysteine S-methyltransferase; Dihydropteroate synthase, DHPS; Methionine synthase, cobalamin (vitamin B12)-binding module, cap; Cobalamin (vitamin B12)-binding; Vitamin B12 dependent methionine synthase, activation region YP_004695888.1 TIGRFAM: Zinc finger/thioredoxin KEGG: nit:NAL212_0385 hypothetical protein YP_004695889.1 TIGRFAM: Ribosomal protein L11 methyltransferase; HAMAP: Ribosomal protein L11 methyltransferase; KEGG: nit:NAL212_0384 50S ribosomal protein L11 methyltransferase; PFAM: Ribosomal L11 methyltransferase YP_004695890.1 KEGG: nit:NAL212_0383 acetyl-CoA carboxylase, biotin carboxylase; TIGRFAM: Acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl phosphate synthetase, large subunit, ATP-binding; Carbamoyl phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal YP_004695891.1 KEGG: nit:NAL212_0382 acetyl-CoA carboxylase, biotin carboxyl carrier protein; TIGRFAM: Acetyl-CoA biotin carboxyl carrier; PFAM: Biotin/lipoyl attachment YP_004695892.1 TIGRFAM: Dehydroquinase, class II; HAMAP: Dehydroquinase, class II; KEGG: nit:NAL212_0381 3-dehydroquinate dehydratase, type II; PFAM: Dehydroquinase, class II YP_004695893.1 PFAM: Restriction endonuclease, type IV-like, Mrr; KEGG: hse:Hsero_1214 5-methylcytosine-specific restriction endonuclease YP_004695894.1 PFAM: Integrase, catalytic core, phage; KEGG: lpp:lpp2123 hypothetical protein YP_004695896.1 KEGG: noc:Noc_0050 hypothetical protein YP_004695897.1 PFAM: Transposase, IS4-like; KEGG: nit:NAL212_2951 transposase IS4 family protein YP_004695898.1 KEGG: ctt:CtCNB1_2990 hypothetical protein YP_004695900.1 KEGG: nit:NAL212_0064 hypothetical protein YP_004695901.1 KEGG: nit:NAL212_0063 IS66 Orf2 family protein; manually curated; PFAM: Transposase (), IS66 Orf2 like YP_004695902.1 KEGG: nit:NAL212_0062 transposase IS66; manually curated; PFAM: Transposase, IS66 YP_004695903.1 KEGG: hypothetical protein YP_004695905.1 KEGG: pph:Ppha_0795 hypothetical protein YP_004695906.1 PFAM: Transposase, IS4-like; KEGG: dar:Daro_2223 transposase IS4 YP_004695908.1 KEGG: nit:NAL212_1538 hypothetical protein YP_004695910.1 KEGG: rsl:RPSI07_mp0498 cob(II)yrinic acid a,c-diamide reductase (blub); TIGRFAM: Cob(II)yrinic acid a,c-diamide reductase; PFAM: Nitroreductase-like YP_004695911.1 KEGG: nit:NAL212_2432 hypothetical protein YP_004695915.1 KEGG: YecA family protein; TIGRFAM: YgfB/YecA protein; PFAM: SEC-C motif YP_004695916.1 PFAM: Helix-turn-helix type 3; KEGG: nit:NAL212_0368 helix-turn-helix domain-containing protein YP_004695917.1 KEGG: dia:Dtpsy_2525 isxo7 transposase YP_004695918.1 KEGG: neu:NE0744 hypothetical protein YP_004695919.1 KEGG: lch:Lcho_2324 hypothetical protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_004695920.1 KEGG: cyj:Cyan7822_2864 hypothetical protein YP_004695921.1 KEGG: nit:NAL212_1188 hypothetical protein YP_004695922.1 KEGG: nit:NAL212_1187 hypothetical protein YP_004695923.1 PFAM: Protein of unknown function DUF202; KEGG: gpb:HDN1F_14580 protein of unknown function DUF202 YP_004695924.1 KEGG: nit:NAL212_1181 hypothetical protein YP_004695925.1 KEGG: nit:NAL212_1180 hypothetical protein YP_004695926.1 PFAM: Lipase, class 3; KEGG: ppr:PBPRA1385 hypothetical protein YP_004695927.1 TIGRFAM: Dethiobiotin synthase; HAMAP: Dethiobiotin synthase; KEGG: nit:NAL212_1178 dethiobiotin synthase; PFAM: Cobyrinic acid a,c-diamide synthase YP_004695928.1 KEGG: nit:NAL212_1177 biotin biosynthesis protein BioC; TIGRFAM: Biotin biosynthesis protein BioC; PFAM: Methyltransferase type 11 YP_004695929.1 TIGRFAM: BioH; HAMAP: Carboxylesterase bioH; KEGG: nit:NAL212_1176 BioH protein; PFAM: Alpha/beta hydrolase fold-1 YP_004695930.1 TIGRFAM: 8-amino-7-oxononanoate synthase; HAMAP: 8-amino-7-oxononanoate synthase; KEGG: nit:NAL212_1175 8-amino-7-oxononanoate synthase; PFAM: Aminotransferase, class I/II YP_004695931.1 SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: Biotin synthase; KEGG: nit:NAL212_1174 biotin synthase; HAMAP: Biotin synthase; PFAM: Biotin/thiamin synthesis-associated protein; Radical SAM YP_004695932.1 PFAM: Phosphoribosyltransferase; KEGG: nit:NAL212_1173 phosphoribosyltransferase YP_004695933.1 PFAM: tRNA/rRNA methyltransferase, SpoU; KEGG: nit:NAL212_1172 RNA methyltransferase, TrmH family, group 2 YP_004695934.1 KEGG: nit:NAL212_1171 type IV pilus secretin PilQ; TIGRFAM: Type IV pilus secretin PilQ; PFAM: Type II/III secretion system; Secretin/TonB, short N-terminal YP_004695935.1 PFAM: Pilus assembly protein PilP; KEGG: nit:NAL212_1170 pilus assembly protein PilP YP_004695936.1 PFAM: Pilus assembly protein, PilO; KEGG: nit:NAL212_1169 fimbrial type-4 assembly membrane transmembrane protein YP_004695937.1 PFAM: Fimbrial assembly; KEGG: nit:NAL212_1168 fimbrial assembly family protein YP_004695938.1 TIGRFAM: Type IV pilus assembly protein PilM; KEGG: nit:NAL212_1167 type IV pilus assembly protein PilM YP_004695939.1 KEGG: nit:NAL212_1166 penicillin-binding protein, 1A family; TIGRFAM: Penicillin-binding protein 1A; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase YP_004695940.1 PFAM: Tetrapyrrole biosynthesis, porphobilinogen synthase; KEGG: nit:NAL212_1165 porphobilinogen synthase YP_004695941.1 TIGRFAM: GTP-binding protein, ribosome biogenesis, YsxC; HAMAP: GTP-binding protein, ribosome biogenesis, YsxC; KEGG: nit:NAL212_1164 ribosome biogenesis GTP-binding protein YsxC; PFAM: GTP-binding protein, HSR1-related YP_004695942.1 TIGRFAM: Bordetella pertussis Bvg accessory factor; HAMAP: Type III pantothenate kinase; KEGG: nit:NAL212_1163 transcriptional acitvator, Baf family; PFAM: Bordetella pertussis Bvg accessory factor YP_004695943.1 KEGG: nit:NAL212_1162 biotin/acetyl-CoA-carboxylase ligase; TIGRFAM: Biotin--acetyl-CoA-carboxylase ligase; PFAM: Biotin/lipoate A/B protein ligase; Helix-turn-helix, type 11; Biotin protein ligase, C-terminal YP_004695944.1 TIGRFAM: Ribosomal protein L17; HAMAP: 50S ribosomal protein L17; KEGG: nit:NAL212_1161 50S ribosomal protein L17; PFAM: Ribosomal protein L17 YP_004695945.1 SMART: DNA-directed RNA polymerase, RpoA/D/Rpb3-type; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; KEGG: nit:NAL212_1160 DNA-directed RNA polymerase, alpha subunit; HAMAP: DNA-directed RNA polymerase, alpha subunit; PFAM: DNA-directed RNA polymerase, insert; DNA-directed RNA polymerase, dimerisation; RNA polymerase, alpha subunit, C-terminal YP_004695946.1 TIGRFAM: Ribosomal protein S4, bacterial-type; PFAM: Ribosomal protein S4; RNA-binding S4; KEGG: nit:NAL212_1159 30S ribosomal protein S4; SMART: RNA-binding S4 YP_004695947.1 KEGG: nit:NAL212_1158 30S ribosomal protein S11; TIGRFAM: Ribosomal protein S11, bacterial-type; PFAM: Ribosomal protein S11 YP_004695948.1 KEGG: nit:NAL212_1157 30S ribosomal protein S13; TIGRFAM: Ribosomal protein S13, bacterial-type; PFAM: Ribosomal protein S13 YP_004695949.1 PFAM: Ribosomal protein L36; manually curated; TIGRFAM: Ribosomal protein L36; KEGG: ftn:FTN_0260 50S ribosomal protein L36; HAMAP: Ribosomal protein L36 YP_004695950.1 TIGRFAM: Translation initiation factor IF-1; HAMAP: Translation initiation factor IF-1; KEGG: nit:NAL212_1156 translation initiation factor IF-1; PFAM: S1, IF1 type YP_004695951.1 KEGG: nit:NAL212_1155 preprotein translocase, SecY subunit; TIGRFAM: SecY protein; PFAM: SecY protein YP_004695952.1 KEGG: nit:NAL212_1154 50S ribosomal protein L15; TIGRFAM: Ribosomal protein L15, bacterial-type; PFAM: Ribosomal protein L15 YP_004695953.1 KEGG: dia:Dtpsy_0391 50S ribosomal protein L30; TIGRFAM: Ribosomal protein L30, bacterial-type; PFAM: Ribosomal protein L30p/L7e, conserved region YP_004695954.1 KEGG: nit:NAL212_1152 30S ribosomal protein S5; TIGRFAM: Ribosomal protein S5, bacterial-type; PFAM: Ribosomal protein S5, C-terminal; Ribosomal protein S5, N-terminal YP_004695955.1 KEGG: nit:NAL212_1151 50S ribosomal protein L18; TIGRFAM: Ribosomal protein L18, bacterial; PFAM: Ribosomal protein L18/L5 YP_004695956.1 KEGG: nit:NAL212_1150 50S ribosomal protein L6; TIGRFAM: Ribosomal protein L6, bacterial-type; PFAM: Ribosomal protein L6, alpha-beta domain YP_004695957.1 PFAM: Ribosomal protein S8; KEGG: nmu:Nmul_A0781 ribosomal protein S8 YP_004695958.1 KEGG: nit:NAL212_1148 30S ribosomal protein S14; HAMAP: 30S ribosomal protein S14; PFAM: Ribosomal protein S14 YP_004695959.1 PFAM: Ribosomal protein L5; KEGG: nit:NAL212_1147 50S ribosomal protein L5 YP_004695960.1 KEGG: nit:NAL212_1146 50S ribosomal protein L24; TIGRFAM: Ribosomal protein L24; SMART: KOW YP_004695961.1 manually curated; TIGRFAM: Ribosomal protein L14, bacterial-type; KEGG: nit:NAL212_1145 50S ribosomal protein L14; PFAM: Ribosomal protein L14b/L23e YP_004695962.1 KEGG: nit:NAL212_1144 30S ribosomal protein S17; TIGRFAM: Ribosomal protein S17, bacterial-type; PFAM: Ribosomal protein S17 YP_004695963.1 KEGG: nit:NAL212_1143 50S ribosomal protein L29; TIGRFAM: Ribosomal protein L29; PFAM: Ribosomal protein L29 YP_004695964.1 TIGRFAM: Ribosomal protein L16; HAMAP: Ribosomal protein L16; KEGG: nit:NAL212_1142 50S ribosomal protein L16; PFAM: Ribosomal protein L10e/L16 YP_004695965.1 TIGRFAM: Ribosomal protein S3, bacterial; PFAM: Ribosomal protein S3, C-terminal; Ribosomal protein S3, N-terminal; K Homology, type 2; KEGG: nit:NAL212_1141 30S ribosomal protein S3; SMART: K Homology YP_004695966.1 KEGG: nmu:Nmul_A0772 ribosomal protein L22; TIGRFAM: Ribosomal protein L22, bacterial-type; PFAM: Ribosomal protein L22/L17 YP_004695967.1 KEGG: nit:NAL212_1139 30S ribosomal protein S19; TIGRFAM: Ribosomal protein S19, bacterial-type; PFAM: Ribosomal protein S19/S15 YP_004695968.1 KEGG: nit:NAL212_1138 50S ribosomal protein L2; TIGRFAM: Ribosomal protein L2, bacterial-type; PFAM: Ribosomal protein L2 YP_004695969.1 PFAM: Ribosomal protein L25/L23; KEGG: nit:NAL212_1137 50S ribosomal protein L25/L23 YP_004695970.1 PFAM: Ribosomal protein L4/L1e; KEGG: nit:NAL212_1136 50S ribosomal protein L4/L1e YP_004695971.1 KEGG: nit:NAL212_1135 50S ribosomal protein L3; TIGRFAM: Ribosomal protein L3, bacterial/organelle-type; PFAM: Ribosomal protein L3 YP_004695972.1 TIGRFAM: Ribosomal protein S10, bacterial; HAMAP: 30S ribosomal protein S10; KEGG: neu:NE0400 30S ribosomal protein S10; PFAM: Ribosomal protein S10 YP_004695973.1 KEGG: nit:NAL212_2147 translation elongation factor Tu; TIGRFAM: Translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFTu/EF1A, C-terminal YP_004695974.1 KEGG: nit:NAL212_1132 translation elongation factor G; TIGRFAM: Translation elongation factor EFG/EF2; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal YP_004695975.1 KEGG: nit:NAL212_1131 30S ribosomal protein S7; TIGRFAM: Ribosomal protein S7, bacterial-type; PFAM: Ribosomal protein S7 YP_004695976.1 KEGG: nit:NAL212_1130 30S ribosomal protein S12; TIGRFAM: Ribosomal protein S12, bacterial-type; PFAM: Ribosomal protein S12/S23 YP_004695977.1 KEGG: nit:NAL212_1129 hypothetical protein; HAMAP: UPF0234 protein yajQ; PFAM: Protein of unknown function DUF520 YP_004695978.1 TIGRFAM: Argininosuccinate synthase; HAMAP: Argininosuccinate synthase; KEGG: nit:NAL212_1128 argininosuccinate synthase; PFAM: Argininosuccinate synthase YP_004695979.1 TIGRFAM: Ornithine carbamoyltransferase; HAMAP: Ornithine carbamoyltransferase; KEGG: nit:NAL212_1127 ornithine carbamoyltransferase; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region YP_004695980.1 TIGRFAM: Acetylornithine/succinylornithine aminotransferase; HAMAP: Acetylornithine/succinyldiaminopimelate aminotransferase; KEGG: nit:NAL212_1126 acetylornithine and succinylornithine aminotransferase; PFAM: Aminotransferase class-III YP_004695981.1 TIGRFAM: DNA gyrase, subunit A; PFAM: DNA topoisomerase, type IIA, subunit A or C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel; KEGG: nit:NAL212_1125 DNA gyrase, A subunit; SMART: DNA topoisomerase, type IIA, subunit A or C-terminal YP_004695982.1 TIGRFAM: Phosphoserine aminotransferase; HAMAP: Phosphoserine aminotransferase; KEGG: nit:NAL212_1124 phosphoserine aminotransferase; PFAM: Aminotransferase, class V/Cysteine desulfurase YP_004695983.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; KEGG: nit:NAL212_1123 phosphoglycerate dehydrogenase YP_004695984.1 KEGG: nit:NAL212_1122 chorismate mutase; TIGRFAM: Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain; PFAM: Prephenate dehydratase; Chorismate mutase, type II; Amino acid-binding ACT YP_004695985.1 TIGRFAM: Histidinol-phosphate aminotransferase; HAMAP: Histidinol-phosphate aminotransferase; KEGG: nit:NAL212_1121 histidinol-phosphate aminotransferase; PFAM: Aminotransferase, class I/II YP_004695986.1 KEGG: nmu:Nmul_A2194 phospho-2-dehydro-3-deoxyheptonate aldolase; TIGRFAM: Phospho-2-dehydro-3-deoxyheptonate aldolase, subtype 2; PFAM: DAHP synthetase I/KDSA YP_004695987.1 PFAM: Prephenate dehydrogenase; KEGG: nit:NAL212_1120 prephenate dehydrogenase YP_004695989.1 KEGG: nit:NAL212_1119 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004695990.1 SMART: Diguanylate phosphodiesterase, predicted; MCP methyltransferase, CheR-type; PAC motif; Diguanylate cyclase, predicted; TIGRFAM: Diguanylate cyclase, predicted; PAS; KEGG: nit:NAL212_2095 diguanylate cyclase/phosphodiesterase; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase; MCP methyltransferase, CheR-type; PAS fold-3 YP_004695991.1 KEGG: nit:NAL212_1407 hypothetical protein YP_004695992.1 PFAM: Insertion element protein; KEGG: neu:NE0744 hypothetical protein YP_004695993.1 KEGG: dia:Dtpsy_2525 isxo7 transposase YP_004695994.1 PFAM: Sulphur relay, DsrE-like protein; KEGG: nhl:Nhal_2753 DsrE family protein YP_004695995.1 KEGG: nmu:Nmul_A0910 hypothetical protein YP_004695996.1 PFAM: ATP-grasp fold, RimK-type; KEGG: tbd:Tbd_1453 glutathione synthase/ribosomal protein S6 modification enzyme (glutaminyl transferase) YP_004695997.1 PFAM: Glutamate--cysteine ligase, GCS2; KEGG: nmu:Nmul_A0909 glutamate--cysteine ligase, GCS2 YP_004695998.1 PFAM: N-formylglutamate amidohydrolase; KEGG: nmu:Nmul_A0908 N-formylglutamate amidohydrolase YP_004695999.1 KEGG: nit:NAL212_1591 methionine-R-sulfoxide reductase; TIGRFAM: Methionine sulphoxide reductase B; PFAM: Methionine sulphoxide reductase B YP_004696000.1 PFAM: Lipid A 3-O-deacylase-related; KEGG: hdn:Hden_3314 lipid A 3-O-deacylase-related protein YP_004696001.1 SMART: Toll-Interleukin receptor; KEGG: gca:Galf_1496 TIR protein YP_004696002.1 PFAM: SNARE associated Golgi protein; KEGG: ppw:PputW619_5041 hypothetical protein YP_004696003.1 TIGRFAM: HDIG; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; KEGG: nit:NAL212_0582 metal dependent phosphohydrolase; SMART: Metal-dependent phosphohydrolase, HD region YP_004696004.1 PFAM: Carbonic anhydrase; KEGG: sku:Sulku_0484 carbonic anhydrase YP_004696005.1 PFAM: Protein of unknown function DUF125, transmembrane; KEGG: nit:NAL212_1328 hypothetical protein YP_004696006.1 KEGG: nit:NAL212_1327 hypothetical protein YP_004696007.1 KEGG: glo:Glov_2674 hypothetical protein YP_004696008.1 PFAM: Domain of unknown function DUF1993; KEGG: nit:NAL212_1326 hypothetical protein YP_004696009.1 KEGG: sbp:Sbal223_2521 hypothetical protein YP_004696010.1 KEGG: she:Shewmr4_1552 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004696011.1 PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-4; KEGG: nit:NAL212_1928 hypothetical protein YP_004696012.1 KEGG: nit:NAL212_1929 hypothetical protein YP_004696013.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: nit:NAL212_1930 transcriptional regulator, TetR family YP_004696014.1 KEGG: cch:Cag_0529 hypothetical protein YP_004696015.1 PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; GCN5-related N-acetyltransferase; KEGG: nit:NAL212_2071 hypothetical protein YP_004696016.1 KEGG: nit:NAL212_1933 hypothetical protein YP_004696017.1 KEGG: net:Neut_1937 hypothetical protein YP_004696018.1 KEGG: nit:NAL212_1934 response regulator receiver modulated diguanylate phosphodiesterase; PFAM: Diguanylate phosphodiesterase, predicted; Signal transduction response regulator, receiver region; SMART: Diguanylate phosphodiesterase, predicted; Signal transduction response regulator, receiver region YP_004696019.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; PAS fold; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, phosphotransfer (Hpt) region; KEGG: nit:NAL212_1379 multi-sensor hybrid histidine kinase; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; PAS; Signal transduction response regulator, receiver region YP_004696020.1 KEGG: nit:NAL212_1380 hypothetical protein YP_004696021.1 KEGG: nit:NAL212_1381 undecaprenyl-phosphate glucose phosphotransferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase, WcaJ; Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase YP_004696022.1 PFAM: Phospholipase/carboxylesterase; KEGG: nit:NAL212_1574 carboxylesterase YP_004696023.1 KEGG: nit:NAL212_1573 transglutaminase domain-containing protein; PFAM: Transglutaminase-like; SMART: Transglutaminase-like YP_004696024.1 KEGG: nit:NAL212_1569 TonB-dependent vitamin B12 receptor; TIGRFAM: TonB-dependent vitamin B12 receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel YP_004696025.1 KEGG: nit:NAL212_1568 hypothetical protein YP_004696026.1 KEGG: nit:NAL212_1567 cob(I)alamin adenosyltransferase; TIGRFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR; PFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR YP_004696027.1 TIGRFAM: Cobyric acid synthase CobQ; HAMAP: Cobyric acid synthase CobQ; KEGG: pst:PSPTO_1713 cobyric acid synthase; PFAM: CobB/CobQ-like glutamine amidotransferase; Cobyrinic acid a,c-diamide synthase YP_004696028.1 PFAM: Cobinamide kinase/cobinamide phosphate guanyltransferase; KEGG: pae:PA1278 adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase YP_004696029.1 TIGRFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, core, prokaryotic; HAMAP: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, core, prokaryotic; KEGG: tkm:TK90_1454 nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like, core YP_004696030.1 PFAM: Phosphoglycerate mutase; KEGG: psa:PST_1300 alpha-ribazole-5'-phosphate phosphatase YP_004696031.1 TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobS, cobalamin-5-phosphate synthase; HAMAP: Cobalamin (vitamin B12) biosynthesis CobS, cobalamin-5-phosphate synthase; KEGG: acd:AOLE_10485 cobalamin 5'-phosphate synthase; PFAM: Cobalamin (vitamin B12) biosynthesis CobS, cobalamin-5-phosphate synthase YP_004696032.1 KEGG: nit:NAL212_2602 hypothetical protein YP_004696033.1 KEGG: nit:NAL212_2603 hypothetical protein YP_004696034.1 KEGG: nit:NAL212_2604 methane monooxygenase/ammonia monooxygenase, subunit B; TIGRFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit B; PFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit B YP_004696035.1 KEGG: nit:NAL212_2605 methane monooxygenase/ammonia monooxygenase, subunit A; TIGRFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit A; PFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit A YP_004696036.1 KEGG: nit:NAL212_2606 methane monooxygenase/ammonia monooxygenase, subunit C; TIGRFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit C; PFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit C YP_004696038.1 PFAM: Transposase, IS4-like; KEGG: dar:Daro_2223 transposase IS4 YP_004696039.1 PFAM: Peptidase M10A/M12B, matrixin/adamalysin YP_004696040.1 PFAM: Transposase, IS4-like; KEGG: nit:NAL212_2951 transposase IS4 family protein YP_004696041.1 KEGG: nit:NAL212_2010 hypothetical protein; TIGRFAM: HI0933-like protein; PFAM: HI0933-like protein YP_004696042.1 manually curated; KEGG: nit:NAL212_2009 transmembrane protein YP_004696043.1 TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; HAMAP: tRNA dimethylallyltransferase; KEGG: nit:NAL212_2008 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase YP_004696044.1 PFAM: Transport-associated; KEGG: nit:NAL212_2007 transport-associated protein YP_004696045.1 KEGG: nit:NAL212_2006 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; TIGRFAM: 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; HAMAP: 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase YP_004696046.1 KEGG: nit:NAL212_2005 succinyldiaminopimelate transaminase; TIGRFAM: Succinyldiaminopimelate transaminase, beta/gammaproteobacteria; PFAM: Aminotransferase, class I/II YP_004696047.1 PFAM: Copper resistance D; Cytochrome c, class I; KEGG: nit:NAL212_1916 copper resistance D domain-containing protein YP_004696048.1 PFAM: Protein of unknown function DUF519; KEGG: gca:Galf_1543 hypothetical protein YP_004696049.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: nit:NAL212_1708 short-chain dehydrogenase/reductase SDR YP_004696050.1 KEGG: vei:Veis_3132 hypothetical protein YP_004696051.1 PFAM: Domain of unknown function DUF1829; Domain of unknown function DUF1828; KEGG: vei:Veis_3133 Lj965 prophage protein YP_004696052.1 KEGG: nit:NAL212_1540 hypothetical protein YP_004696053.1 KEGG: nmu:Nmul_A0896 hypothetical protein YP_004696054.1 PFAM: Phosphoribosyltransferase; KEGG: nmu:Nmul_A0900 phosphoribosyltransferase YP_004696055.1 KEGG: nmu:Nmul_A0901 PHP-like; PFAM: PHP, C-terminal; SMART: DNA-directed DNA polymerase, family X; Helix-hairpin-helix DNA-binding motif, class 1; Polymerase/histidinol phosphatase, N-terminal YP_004696056.1 PFAM: Archease, tRNA m5C methyltransferase chaperone; KEGG: nmu:Nmul_A0902 hypothetical protein YP_004696057.1 PFAM: Uncharacterised protein family UPF0027; KEGG: nmu:Nmul_A0903 hypothetical protein YP_004696058.1 KEGG: nmu:Nmul_A0905 sigma 54 modulation protein/ribosomal protein S30EA; TIGRFAM: Ribosomal protein S30Ae/sigma 54 modulation protein; PFAM: Cold-shock protein, DNA-binding YP_004696059.1 KEGG: rfr:Rfer_0828 isochorismatase hydrolase; manually curated; PFAM: Isochorismatase-like YP_004696060.1 KEGG: nmu:Nmul_A0907 nicotinate phosphoribosyltransferase; TIGRFAM: Nicotinate phosphoribosyltransferase PFAM: Nicotinate phosphoribosyltransferase-like YP_004696061.1 PFAM: Haemolysin-type calcium-binding region; KEGG: azl:AZL_a06050 rhizobiocin/RTX toxin and hemolysin-type calcium binding protein YP_004696062.1 KEGG: nmu:Nmul_A1168 hypothetical protein YP_004696063.1 KEGG: nit:NAL212_1539 signal transduction protein with CBS domains; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core YP_004696064.1 TIGRFAM: Peptidase S16, ATP-dependent protease La; PFAM: Peptidase S16, lon C-terminal; Peptidase S16, lon N-terminal; ATPase, AAA-type, core; KEGG: neu:NE1278 ATP-dependent proteinase La 1 (lon) (class III heat-shock protein); SMART: Peptidase S16, lon N-terminal; ATPase, AAA+ type, core YP_004696065.1 KEGG: nit:NAL212_1538 hypothetical protein YP_004696066.1 KEGG: nit:NAL212_2723 disulfide bond formation protein DsbB; HAMAP: Disulfide bond formation protein B; PFAM: Disulphide bond formation protein DsbB YP_004696067.1 TIGRFAM: Tyrosine recombinase XerD; HAMAP: Tyrosine recombinase xerD; KEGG: nit:NAL212_2724 tyrosine recombinase XerD; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage YP_004696068.1 KEGG: nit:NAL212_2725 methylated-DNA/protein-cysteine methyltransferase; TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding YP_004696069.1 HAMAP: Chaperone protein htpG; PFAM: Heat shock protein Hsp90, C-terminal; ATP-binding region, ATPase-like; KEGG: nmu:Nmul_A1109 heat shock protein 90; SMART: ATP-binding region, ATPase-like YP_004696070.1 TIGRFAM: NADH-quinone oxidoreductase, chain N; HAMAP: NAD(P)H-quinone oxidoreductase subunit 2; KEGG: nit:NAL212_2728 proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase YP_004696071.1 KEGG: nit:NAL212_2729 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: NADH-quinone oxidoreductase, chain M; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase YP_004696072.1 KEGG: nit:NAL212_2730 proton-translocating NADH-quinone oxidoreductase, chain L; TIGRFAM: NADH-plastoquinone oxidoreductase, chain 5; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal YP_004696073.1 KEGG: nit:NAL212_2731 NAD(P)H-quinone oxidoreductase subunit 4L; HAMAP: NAD(P)H-quinone oxidoreductase subunit 4L; PFAM: NADH:ubiquinone/quinone oxidoreductase, chain 4L YP_004696074.1 PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 6; KEGG: nit:NAL212_2732 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YP_004696075.1 TIGRFAM: NADH-quinone oxidoreductase, chain I; HAMAP: NADH-quinone oxidoreductase, chain I; KEGG: nit:NAL212_2733 NADH-quinone oxidoreductase, chain I; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup YP_004696076.1 KEGG: nit:NAL212_2734 NADH dehydrogenase (quinone); HAMAP: NAD(P)H-quinone oxidoreductase subunit 1; PFAM: NADH:ubiquinone oxidoreductase, subunit 1 YP_004696077.1 KEGG: nit:NAL212_2735 NADH-quinone oxidoreductase, chain G; TIGRFAM: NADH:ubiquinone oxidoreductase, subunit G; PFAM: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; Ferredoxin; Molybdopterin oxidoreductase YP_004696078.1 KEGG: nit:NAL212_2736 NADH-quinone oxidoreductase, F subunit; TIGRFAM: NADH ubiquinone oxidoreductase, F subunit; PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding YP_004696079.1 KEGG: nit:NAL212_2737 NADH-quinone oxidoreductase, E subunit; TIGRFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit; PFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit YP_004696080.1 TIGRFAM: NADH dehydrogenase I, D subunit; HAMAP: NAD(P)H-quinone oxidoreductase subunit H; KEGG: nit:NAL212_2738 NADH dehydrogenase I, D subunit; PFAM: NADH-quinone oxidoreductase, subunit D YP_004696081.1 TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; HAMAP: NAD(P)H-quinone oxidoreductase subunit J; KEGG: nit:NAL212_2739 NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH:ubiquinone oxidoreductase, 30kDa subunit YP_004696082.1 TIGRFAM: NADH:ubiquinone oxidoreductase, 20kDa subunit; HAMAP: NAD(P)H-quinone oxidoreductase subunit K; KEGG: nit:NAL212_2740 NADH-quinone oxidoreductase, B subunit; PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit YP_004696083.1 KEGG: nit:NAL212_2741 NAD(P)H-quinone oxidoreductase subunit 3; HAMAP: NAD(P)H-quinone oxidoreductase subunit 3; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 YP_004696084.1 KEGG: nmu:Nmul_A1090 preprotein translocase subunit SecG; TIGRFAM: Preprotein translocase SecG subunit; PFAM: Preprotein translocase SecG subunit YP_004696085.1 KEGG: nit:NAL212_2743 triosephosphate isomerase; TIGRFAM: Triosephosphate isomerase; PFAM: Triosephosphate isomerase YP_004696086.1 TIGRFAM: Phosphate transport system permease 1; PFAM: ABC transporter-like; KEGG: nit:NAL212_2744 phosphate ABC transporter, ATPase subunit; SMART: ATPase, AAA+ type, core YP_004696087.1 KEGG: nit:NAL212_2745 phosphate ABC transporter, inner membrane subunit PstA; TIGRFAM: Phosphate transport system permease 2; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004696088.1 KEGG: nit:NAL212_2746 phosphate ABC transporter, inner membrane subunit PstC; TIGRFAM: Phosphate ABC transporter, permease PstC; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004696089.1 PFAM: NapC/NirT cytochrome c, N-terminal; KEGG: nit:NAL212_2747 NapC/NirT cytochrome c domain-containing protein YP_004696090.1 KEGG: nit:NAL212_2748 cytochrome c-554 YP_004696091.1 KEGG: nit:NAL212_2749 hypothetical protein YP_004696092.1 KEGG: nit:NAL212_2750 hydroxylamine oxidase YP_004696093.1 KEGG: nit:NAL212_2751 hypothetical protein YP_004696094.1 PFAM: Cysteine-rich region, CCG; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: nit:NAL212_2158 hypothetical protein YP_004696095.1 PFAM: FAD linked oxidase, N-terminal; FAD-linked oxidase, C-terminal; KEGG: nit:NAL212_2159 FAD linked oxidase domain-containing protein YP_004696096.1 PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal; KEGG: nit:NAL212_2160 D-lactate dehydrogenase (cytochrome) YP_004696097.1 KEGG: nit:NAL212_2161 2-hydroxy-3-oxopropionate reductase; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding YP_004696098.1 PFAM: Bile acid:sodium symporter; KEGG: nit:NAL212_2211 bile acid:sodium symporter YP_004696099.1 PFAM: Methyltransferase type 12; KEGG: nmu:Nmul_A1634 hypothetical protein YP_004696100.1 KEGG: npu:Npun_DR029 lipoprotein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial; SMP-30/Gluconolaconase/LRE-like region YP_004696101.1 KEGG: psl:Psta_3067 autotransporter-associated beta strand repeat-containing protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_004696102.1 KEGG: nit:NAL212_0962 PEP motif anchor domain-containing protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial; C-type lectin YP_004696103.1 PFAM: Transposase, IS4-like; KEGG: dar:Daro_2223 transposase IS4 YP_004696104.1 KEGG: nit:NAL212_2858 ErfK/YbiS/YcfS/YnhG family protein; PFAM: YkuD domain; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup YP_004696105.1 KEGG: gsu:GSU1898 hypothetical protein YP_004696106.1 KEGG: gur:Gura_1727 hypothetical protein YP_004696108.1 PFAM: Peptidase T2, asparaginase 2; KEGG: nit:NAL212_2859 beta-aspartyl-peptidase YP_004696109.1 KEGG: rmr:Rmar_0342 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; TIGRFAM: Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: Ribonucleotide reductase large subunit, C-terminal; Ribonucleotide reductase large subunit, N-terminal YP_004696110.1 KEGG: rva:Rvan_1424 histone H1 YP_004696111.1 PFAM: Domain of unknown function P63C; KEGG: adn:Alide_4388 hypothetical protein YP_004696114.1 KEGG: aeh:Mlg_0098 PEP motif-containing protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_004696115.1 KEGG: nit:NAL212_2860 polyphosphate:nucleotide phosphotransferase, PPK2 family; TIGRFAM: polyphosphate:nucleotide phosphotransferase, PPK2 family; PFAM: Polyphosphate kinase 2 YP_004696116.1 PFAM: CHAD; Adenylate cyclase; KEGG: nit:NAL212_2861 CHAD domain containing protein YP_004696117.1 KEGG: nit:NAL212_2862 E3 ubiquitin ligase YP_004696118.1 PFAM: LemA; KEGG: nit:NAL212_2863 LemA family protein YP_004696119.1 KEGG: nit:NAL212_2864 hypothetical protein YP_004696120.1 KEGG: nit:NAL212_2866 hypothetical protein YP_004696121.1 KEGG: nit:NAL212_2867 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SMART: HTH transcriptional regulator, Crp; Cyclic nucleotide-binding YP_004696122.1 HAMAP: UPF0176 protein yceA; PFAM: Rhodanese-like; KEGG: slo:Shew_1781 hypothetical protein; SMART: Rhodanese-like YP_004696123.1 KEGG: nit:NAL212_0143 cytochrome c family protein YP_004696124.1 PFAM: Transglutaminase-like; KEGG: hypothetical protein YP_004696125.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: bug:BC1001_1292 signal transduction protein YP_004696126.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; KEGG: nit:NAL212_1597 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted YP_004696127.1 TIGRFAM: Thiolase; KEGG: nit:NAL212_1990 acetyl-CoA acetyltransferase YP_004696128.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; Crotonase, core; KEGG: nit:NAL212_1991 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein YP_004696129.1 KEGG: nit:NAL212_1992 ArsC family protein; TIGRFAM: Conserved hypothetical protein, ArsC related; PFAM: Arsenate reductase-like YP_004696130.1 PFAM: Cupin 2, conserved barrel; KEGG: nit:NAL212_1993 cupin 2 barrel domain-containing protein YP_004696132.1 KEGG: dba:Dbac_0811 hypothetical protein YP_004696133.1 PFAM: Protein of unknown function DUF1234; KEGG: nit:NAL212_1995 alpha/beta hydrolase, N-terminal protein YP_004696134.1 KEGG: dak:DaAHT2_0488 hypothetical protein YP_004696135.1 KEGG: tmz:Tmz1t_0495 hypothetical protein YP_004696136.1 PFAM: Phosphopantetheine-binding; KEGG: nit:NAL212_1588 phosphopantetheine-binding protein YP_004696137.1 PFAM: Transposase, IS4-like; KEGG: tgr:Tgr7_1308 ISRSO18-transposase YP_004696138.1 KEGG: nit:NAL212_1491 hypothetical protein YP_004696139.1 KEGG: sus:Acid_6890 hypothetical protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_004696140.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: nit:NAL212_1489 TonB-dependent receptor YP_004696141.1 KEGG: nit:NAL212_1485 glucose sorbosone dehydrogenase YP_004696142.1 TIGRFAM: polyphosphate kinase 1; HAMAP: Polyphosphate kinase; KEGG: nit:NAL212_1484 polyphosphate kinase; PFAM: Polyphosphate kinase YP_004696143.1 KEGG: nit:NAL212_1483 Ppx/GppA phosphatase; TIGRFAM: exopolyphosphatase; PFAM: Ppx/GppA phosphatase YP_004696144.1 KEGG: nit:NAL212_1482 phosphohistidine phosphatase, SixA; TIGRFAM: Phosphohistidine phosphatase SixA, subgroup; PFAM: Phosphoglycerate mutase YP_004696145.1 KEGG: nit:NAL212_1481 hypothetical protein YP_004696146.1 KEGG: nit:NAL212_1480 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease YP_004696147.1 PFAM: AMP-dependent synthetase/ligase; KEGG: nit:NAL212_1478 long-chain-fatty-acid--CoA ligase YP_004696148.1 PFAM: Protein of unknown function DUF1974; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, type 1; KEGG: nit:NAL212_1477 hypothetical protein YP_004696149.1 TIGRFAM: Succinyl-diaminopimelate desuccinylase, proteobacteria; HAMAP: Succinyl-diaminopimelate desuccinylase, proteobacteria; KEGG: nit:NAL212_2292 succinyl-diaminopimelate desuccinylase; PFAM: Peptidase M20; Peptidase M20, dimerisation YP_004696151.1 manually curated; KEGG: nit:NAL212_1049 hypothetical protein YP_004696152.1 KEGG: nit:NAL212_2003 lipoprotein YP_004696153.1 KEGG: dps:DP2299 hypothetical protein YP_004696154.1 KEGG: xac:XACa0008 hypothetical protein YP_004696155.1 PFAM: Transposase, IS4-like; KEGG: tgr:Tgr7_1308 ISRSO18-transposase YP_004696156.1 PFAM: Conserved hypothetical protein CHP02241, phage tail region protein; KEGG: ppd:Ppro_0372 phage tail protein YP_004696157.1 PFAM: Protein of unknown function DUF853, nucleotide triphosphate hydrolase, KEGG: nit:NAL212_1342 hypothetical protein YP_004696158.1 KEGG: nit:NAL212_1341 glucokinase; TIGRFAM: Glucokinase; PFAM: Glucokinase YP_004696159.1 KEGG: nit:NAL212_1340 alpha-glucan phosphorylase; TIGRFAM: Alpha-glucan phosphorylase; PFAM: Glycosyl transferase, family 35 YP_004696160.1 PFAM: Transposase IS3/IS911; KEGG: gca:Galf_0832 transposase IS3/IS911 family protein YP_004696161.1 KEGG: sli:Slin_5300 hypothetical protein YP_004696164.1 TIGRFAM: S-adenosylmethionine synthetase; HAMAP: S-adenosylmethionine synthase; KEGG: meh:M301_0202 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase YP_004696165.1 KEGG: rpe:RPE_4585 hypothetical protein YP_004696166.1 KEGG: sus:Acid_4088 OmpA/MotB domain-containing protein YP_004696167.1 KEGG: afe:Lferr_1426 integrase catalytic subunit; manually curated; PFAM: Integrase, catalytic core YP_004696169.1 KEGG: sus:Acid_7631 hypothetical protein YP_004696170.1 KEGG: nmu:Nmul_A2047 hypothetical protein YP_004696171.1 KEGG: ana:alr2947 hypothetical protein YP_004696172.1 TIGRFAM: Conserved hypothetical protein CHP02594; KEGG: mdi:METDI4352 hypothetical protein YP_004696174.1 KEGG: bpy:Bphyt_2129 integral membrane sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction response regulator, receiver region; SMART: ATP-binding region, ATPase-like; Signal transduction response regulator, receiver region YP_004696175.1 KEGG: bja:blr7015 two-component response regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal YP_004696176.1 KEGG: nit:NAL212_2397 membrane protein involved in aromatic hydrocarbon degradation; manually curated; PFAM: Membrane protein, aromatic hydrocarbon degradation YP_004696177.1 KEGG: bge:BC1002_7116 integral membrane sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region YP_004696178.1 KEGG: slt:Slit_2581 LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal YP_004696179.1 SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region; TIGRFAM: 1,4-alpha-glucan branching enzyme, core region; KEGG: nit:NAL212_2770 1,4-alpha-glucan branching enzyme; HAMAP: 1,4-alpha-glucan branching enzyme, core region; PFAM: Alpha-amylase, C-terminal all beta; Glycoside hydrolase, family 13, N-terminal; Glycosyl hydrolase, family 13, catalytic region YP_004696180.1 TIGRFAM: Glucose-1-phosphate adenylyltransferase; HAMAP: Glucose-1-phosphate adenylyltransferase; KEGG: nit:NAL212_2769 glucose-1-phosphate adenylyltransferase; PFAM: Nucleotidyl transferase YP_004696181.1 PFAM: Glycoside hydrolase, family 57, core; KEGG: nit:NAL212_2768 glycoside hydrolase 57 YP_004696182.1 PFAM: Alpha-amylase/4-alpha-glucanotransferase, prokaryotic; Domain of unknown function DUF1925; Glycoside hydrolase, family 57, core; KEGG: nit:NAL212_2767 4-alpha-glucanotransferase YP_004696183.1 KEGG: nit:NAL212_2766 glucose-6-phosphate isomerase; HAMAP: Phosphoglucose isomerase (PGI); PFAM: Phosphoglucose isomerase (PGI) YP_004696184.1 TIGRFAM: Glycogen/starch synthases, ADP-glucose type; HAMAP: Glycogen/starch synthases, ADP-glucose type; KEGG: nit:NAL212_2765 glycogen/starch synthase, ADP-glucose type; PFAM: Starch synthase catalytic region; Glycosyl transferase, group 1 YP_004696185.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; KEGG: nit:NAL212_1391 dihydrolipoyl dehydrogenase YP_004696186.1 KEGG: pol:Bpro_2306 hypothetical protein YP_004696187.1 KEGG: nit:NAL212_2550 nicotinamide mononucleotide transporter PnuC YP_004696188.1 PFAM: Protein of unknown function DUF326; KEGG: nmu:Nmul_A1745 hypothetical protein YP_004696189.1 KEGG: nit:NAL212_2399 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding; SMART: HTH transcriptional regulator, Crp YP_004696190.1 PFAM: Redoxin; KEGG: hoh:Hoch_6651 redoxin YP_004696191.1 PFAM: Ferritin/Dps protein; KEGG: nhl:Nhal_1435 ferritin Dps family protein YP_004696192.1 PFAM: BolA-like protein; KEGG: nit:NAL212_1373 BolA family protein YP_004696193.1 PFAM: CsbD-like; KEGG: mms:mma_1042 hypothetical protein YP_004696194.1 PFAM: Transposase, IS4-like; KEGG: xbo:XBJ1_1885 transposase YP_004696195.1 KEGG: nit:NAL212_2764 hypothetical protein YP_004696196.1 KEGG: sma:SAV_4164 hypothetical protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_004696197.1 PFAM: 3-demethylubiquinone-9 3-O-methyltransferase; KEGG: nit:NAL212_2762 hypothetical protein YP_004696198.1 KEGG: nit:NAL212_2761 hypothetical protein YP_004696199.1 KEGG: nit:NAL212_2760 hypothetical protein YP_004696200.1 KEGG: gme:Gmet_1207 hypothetical protein YP_004696201.1 PFAM: Transposase, IS116/IS110/IS902; Transposase, IS111A/IS1328/IS1533; KEGG: nhl:Nhal_1988 transposase IS116/IS110/IS902 family protein YP_004696202.1 KEGG: nit:NAL212_0856 hypothetical protein YP_004696204.1 KEGG: nit:NAL212_2757 hypothetical protein YP_004696206.1 KEGG: hoh:Hoch_6445 thiol oxidoreductase-like protein YP_004696207.1 PFAM: NADPH-dependent FMN reductase; KEGG: pna:Pnap_0016 NADPH-dependent FMN reductase YP_004696208.1 TIGRFAM: Gamma-glutamyl phosphate reductase GPR; HAMAP: Glutamate-5-semialdehyde dehydrogenase; KEGG: nit:NAL212_1336 gamma-glutamyl phosphate reductase; PFAM: Aldehyde dehydrogenase YP_004696209.1 KEGG: nit:NAL212_1335 dihydrolipoamide dehydrogenase; TIGRFAM: Dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Biotin/lipoyl attachment; Pyridine nucleotide-disulphide oxidoreductase, dimerisation YP_004696210.1 KEGG: nit:NAL212_1334 hypothetical protein YP_004696211.1 PFAM: Protein of unknown function DUF785; KEGG: nit:NAL212_1333 hypothetical protein YP_004696212.1 KEGG: nit:NAL212_1332 hypothetical protein YP_004696213.1 TIGRFAM: Alpha-L-glutamate ligase-related protein; KEGG: nit:NAL212_1331 alpha-L-glutamate ligase-like protein YP_004696214.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; Signal transduction histidine kinase, phosphotransfer (Hpt) region; Signal transduction response regulator, receiver region; KEGG: nit:NAL212_1330 response regulator receiver modulated diguanylate cyclase; SMART: Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region YP_004696215.1 KEGG: nit:NAL212_1116 esterase/lipase/thioesterase YP_004696216.1 PFAM: UspA; KEGG: nit:NAL212_1115 UspA domain-containing protein YP_004696217.1 TIGRFAM: Outer membrane assembly lipoprotein YfiO; KEGG: nit:NAL212_1114 outer membrane assembly lipoprotein YfiO YP_004696218.1 KEGG: nit:NAL212_1113 pseudouridine synthase, RluA family; TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4 YP_004696219.1 PFAM: Protein of unknown function DUF1597; KEGG: nit:NAL212_1112 hypothetical protein YP_004696220.1 PFAM: Type IV pilus assembly PilZ; KEGG: nit:NAL212_1111 type IV pilus assembly PilZ YP_004696221.1 KEGG: nit:NAL212_1110 CAAX prenyl protease-like protein; TIGRFAM: Prenyl protease-related; PFAM: Abortive infection protein YP_004696222.1 KEGG: nit:NAL212_1109 DNA-directed DNA polymerase; HAMAP: DNA polymerase IV; PFAM: DNA-repair protein, UmuC-like YP_004696223.1 HAMAP: UPF0225 protein ychJ; KEGG: nmu:Nmul_A1106 hypothetical protein YP_004696224.1 PFAM: Protein of unknown function DUF2279, periplasmic lipoprotein; KEGG: nmu:Nmul_A2261 hypothetical protein YP_004696225.1 TIGRFAM: Transcription elongation factor GreB, prokaryotic; HAMAP: Transcription elongation factor greA; KEGG: nit:NAL212_2202 transcription elongation factor GreB; PFAM: Transcription elongation factor, GreA/GreB region, prokaryotic YP_004696226.1 KEGG: amr:AM1_6060 histidine decarboxylase YP_004696227.1 PFAM: Small multidrug resistance protein; KEGG: nit:NAL212_2771 small multidrug resistance protein YP_004696228.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; KEGG: nit:NAL212_0587 phosphoglycerate dehydrogenase YP_004696229.1 KEGG: sde:Sde_2290 hypothetical protein YP_004696230.1 KEGG: nit:NAL212_0581 hypothetical protein YP_004696231.1 PFAM: Abortive infection protein; KEGG: cvi:CV_3749 hypothetical protein YP_004696232.1 TIGRFAM: DNA helicase, DnaB type; PFAM: DNA helicase, DnaB-like, C-terminal; DNA helicase, DnaB-like, N-terminal; KEGG: nit:NAL212_0580 replicative DNA helicase; SMART: ATPase, AAA+ type, core YP_004696233.1 TIGRFAM: Ribosomal protein L9, bacteria/chloroplast; HAMAP: Ribosomal protein L9, bacteria/chloroplast; KEGG: nit:NAL212_0579 50S ribosomal protein L9; PFAM: Ribosomal protein L9, N-terminal; Ribosomal protein L9, C-terminal YP_004696234.1 TIGRFAM: Ribosomal protein S18; HAMAP: 30S ribosomal protein S18; KEGG: nit:NAL212_0578 30S ribosomal protein S18; PFAM: Ribosomal protein S18 YP_004696235.1 KEGG: nit:NAL212_0577 single-strand binding protein/primosomal replication protein N; manually curated; PFAM: Primosome PriB/single-strand DNA-binding YP_004696236.1 TIGRFAM: Ribosomal protein S6; HAMAP: Ribosomal protein S6, bacterial-like; KEGG: nit:NAL212_0576 30S ribosomal protein S6; PFAM: Ribosomal protein S6, bacterial-like YP_004696237.1 KEGG: nit:NAL212_0575 glutamine amidotransferase of anthranilate synthase; TIGRFAM: Glutamine amidotransferase of anthranilate synthase; PFAM: Glutamine amidotransferase class-I, C-terminal YP_004696238.1 TIGRFAM: Anthranilate phosphoribosyl transferase; HAMAP: Anthranilate phosphoribosyl transferase; KEGG: nit:NAL212_0574 anthranilate phosphoribosyltransferase; PFAM: Glycosyl transferase, family 3; Glycosyl transferase, family 3, N-terminal YP_004696239.1 PFAM: Indole-3-glycerol phosphate synthase; KEGG: nit:NAL212_0573 indole-3-glycerol-phosphate synthase YP_004696240.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: nit:NAL212_0572 metal-dependent hydrolase HDOD YP_004696241.1 KEGG: sea:SeAg_B2870 hypothetical protein YP_004696243.1 KEGG: sbm:Shew185_4132 hypothetical protein YP_004696246.1 KEGG: dar:Daro_1040 hypothetical protein YP_004696247.1 KEGG: nit:NAL212_0325 replication initiation factor YP_004696248.1 KEGG: nit:NAL212_2472 DNA binding protein, excisionase YP_004696249.1 KEGG: nit:NAL212_0327 integrase; manually curated; PFAM: Integrase, catalytic core, phage YP_004696250.1 PFAM: Stringent starvation protein B; KEGG: nit:NAL212_2477 stringent starvation protein B YP_004696251.1 PFAM: Glutathione S-transferase, N-terminal; KEGG: nit:NAL212_2478 glutathione S-transferase domain YP_004696252.1 PFAM: Cytochrome c1; KEGG: nit:NAL212_2479 cytochrome c1 YP_004696253.1 PFAM: Cytochrome b/b6, N-terminal; Cytochrome b/b6, C-terminal; KEGG: nit:NAL212_2480 cytochrome b/b6 domain YP_004696254.1 KEGG: nit:NAL212_2481 ubiquinol-cytochrome c reductase, iron-sulfur subunit; TIGRFAM: Ubiquinol-cytochrome c reductase, iron-sulphur subunit; PFAM: Rieske [2Fe-2S] iron-sulphur domain; Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal YP_004696255.1 TIGRFAM: SecA protein; HAMAP: Protein translocase subunit secA; KEGG: nit:NAL212_2482 preprotein translocase, SecA subunit; PFAM: SecA DEAD-like; SecA preprotein cross-linking region; SecA Wing/Scaffold; SEC-C motif YP_004696256.1 PFAM: Peptidase M23; KEGG: nit:NAL212_2483 peptidase M23 YP_004696257.1 PFAM: Protein of unknown function DUF721; KEGG: nit:NAL212_2484 hypothetical protein YP_004696258.1 PFAM: Ribonuclease II/R; KEGG: nit:NAL212_2487 ribonuclease II YP_004696259.1 TIGRFAM: TonB, C-terminal; KEGG: nit:NAL212_2488 TonB family protein YP_004696260.1 TIGRFAM: Quinate/shikimate 5-dehydrogenase; HAMAP: Shikimate dehydrogenase; KEGG: nit:NAL212_2489 shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase YP_004696261.1 KEGG: nit:NAL212_2490 magnesium transporter; TIGRFAM: Divalent cation transporter; PFAM: Magnesium transporter, MgtE intracellular region; Cystathionine beta-synthase, core; MgtE integral membrane region YP_004696262.1 KEGG: eba:ebA6029 hypothetical protein YP_004696263.1 PFAM: NADPH-dependent FMN reductase; KEGG: aeh:Mlg_2714 NADPH-dependent FMN reductase YP_004696264.1 PFAM: Protein of unknown function DUF2132; KEGG: psa:PST_1146 hypothetical protein YP_004696265.1 KEGG: pca:Pcar_2636 RNA-binding protein YP_004696266.1 KEGG: nit:NAL212_1707 rRNA (guanine-N(2)-)-methyltransferase; HAMAP: S-adenosyl-L-dependent RNA methyltransferase, bacteria,; PFAM: RNA methylase; THUMP YP_004696267.1 KEGG: nit:NAL212_0164 CopG family protein YP_004696268.1 KEGG: nit:NAL212_0163 transcriptional modulator of MazE/toxin, MazF; manually curated; PFAM: PemK-like protein YP_004696269.1 KEGG: nit:NAL212_0660 heavy metal efflux pump, CzcA family; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein YP_004696270.1 KEGG: nit:NAL212_0661 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004696271.1 PFAM: Outer membrane efflux protein; KEGG: nit:NAL212_0016 outer membrane efflux protein YP_004696272.1 KEGG: nit:NAL212_0663 hypothetical protein YP_004696273.1 TIGRFAM: Maf-like protein; HAMAP: Maf-like protein; KEGG: nit:NAL212_0664 septum formation protein Maf; PFAM: Maf-like protein YP_004696274.1 PFAM: Protein of unknown function DUF177; KEGG: nit:NAL212_0665 hypothetical protein YP_004696275.1 TIGRFAM: Ribosomal protein L32p; HAMAP: Ribosomal protein L32p; KEGG: nit:NAL212_0666 50S ribosomal protein L32; PFAM: Ribosomal protein L32p YP_004696276.1 TIGRFAM: Phospholipid biosynthesis protein, PlsX like; HAMAP: Phospholipid biosynthesis protein, PlsX like; KEGG: nit:NAL212_0667 phosphate acyltransferase; PFAM: Fatty acid synthesis plsX protein YP_004696277.1 TIGRFAM: Beta-ketoacyl-acyl carrier protein synthase III (FabH); HAMAP: Beta-ketoacyl-acyl carrier protein synthase III (FabH); KEGG: nit:NAL212_0668 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YP_004696278.1 KEGG: nit:NAL212_0669 malonyl CoA-acyl carrier protein transacylase; TIGRFAM: Malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase YP_004696279.1 KEGG: nit:NAL212_0670 3-oxoacyl-(acyl-carrier-protein) reductase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004696280.1 TIGRFAM: Acyl carrier protein (ACP); HAMAP: Acyl carrier protein (ACP); KEGG: nit:NAL212_0671 acyl carrier protein; PFAM: Phosphopantetheine-binding YP_004696281.1 KEGG: nit:NAL212_0672 3-oxoacyl-(acyl-carrier-protein) synthase 2; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal YP_004696282.1 KEGG: nit:NAL212_0673 aminodeoxychorismate lyase; TIGRFAM: Uncharacterised protein family YceG-like; PFAM: Uncharacterised protein family YceG-like YP_004696283.1 PFAM: Glycosyl transferase, family 2; GtrA-like protein; Glycosyl transferase, family 39; KEGG: nit:NAL212_0674 dolichyl-phosphate beta-D-mannosyltransferase YP_004696284.1 KEGG: nit:NAL212_2635 hypothetical protein YP_004696285.1 PFAM: Zinc/iron permease; KEGG: nit:NAL212_2634 zinc/iron permease YP_004696286.1 KEGG: nit:NAL212_2633 multi-copper polyphenol oxidoreductase, laccase; TIGRFAM: Multi-copper polyphenol oxidoreductase, laccase; PFAM: Multi-copper polyphenol oxidoreductase, laccase YP_004696287.1 PFAM: Ankyrin repeat; KEGG: nit:NAL212_2632 ankyrin YP_004696288.1 PFAM: Glycerophosphoryl diester phosphodiesterase; KEGG: nit:NAL212_2631 glycerophosphoryl diester phosphodiesterase YP_004696289.1 PFAM: FAD dependent oxidoreductase; KEGG: nit:NAL212_2630 glycerol-3-phosphate dehydrogenase YP_004696290.1 PFAM: Carbohydrate kinase, FGGY, N-terminal; KEGG: nit:NAL212_2629 glycerol kinase YP_004696291.1 KEGG: nit:NAL212_2628 hypothetical protein YP_004696292.1 PFAM: Glycosyl transferase, family 2; KEGG: nit:NAL212_2627 glycosyl transferase 2 YP_004696293.1 KEGG: ade:Adeh_2940 hypothetical protein YP_004696294.1 KEGG: dre:798921 si:ch211-217k17.9 YP_004696295.1 KEGG: nit:NAL212_2584 ATPase, P-type (transporting), HAD superfamily, subfamily IC; TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: ATPase, P-type, ATPase-associated region; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase; ATPase, P-type cation-transporter, C-terminal YP_004696296.1 PFAM: Beta-lactamase hydrolase-like; KEGG: nit:NAL212_2585 beta-lactamase hydrolase-family protein YP_004696297.1 KEGG: nit:NAL212_2589 regulatory protein ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004696298.1 PFAM: Protein of unknown function DUF395, YeeE/YedE; KEGG: nit:NAL212_2590 hypothetical protein YP_004696299.1 KEGG: nit:NAL212_2592 beta-lactamase domain-containing protein YP_004696300.1 PFAM: Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal; KEGG: nit:NAL212_2593 heat shock protein DnaJ domain-containing protein YP_004696302.1 PFAM: Hemin uptake protein hemP; KEGG: nit:NAL212_2594 hemin uptake protein HemP YP_004696303.1 KEGG: nit:NAL212_2595 bacterioferritin; TIGRFAM: Bacterioferritin; PFAM: Ferritin/Dps protein YP_004696304.1 KEGG: nit:NAL212_2596 hypothetical protein YP_004696305.1 KEGG: nit:NAL212_0699 hypothetical protein YP_004696306.1 KEGG: nit:NAL212_0698 single-strand binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding YP_004696307.1 PFAM: Major facilitator superfamily MFS-1; KEGG: nit:NAL212_0697 major facilitator superfamily MFS_1 YP_004696308.1 TIGRFAM: Excinuclease ABC, A subunit; HAMAP: UvrABC system protein A; KEGG: nit:NAL212_0696 excinuclease ABC, A subunit; PFAM: ABC transporter-like YP_004696309.1 PFAM: MOFRL; KEGG: nit:NAL212_0695 hydroxypyruvate reductase YP_004696310.1 manually curated; KEGG: nit:NAL212_0694 hypothetical protein YP_004696311.1 KEGG: nit:NAL212_0693 hypothetical protein YP_004696312.1 PFAM: Porin, Gram-negative type; KEGG: nit:NAL212_0692 porin YP_004696313.1 PFAM: YkuD domain; KEGG: nit:NAL212_0691 ErfK/YbiS/YcfS/YnhG family protein YP_004696314.1 KEGG: nit:NAL212_0690 hypothetical protein YP_004696315.1 PFAM: YkuD domain; KEGG: nit:NAL212_0689 ErfK/YbiS/YcfS/YnhG family protein YP_004696316.1 KEGG: gca:Galf_1570 hydrogenase assembly chaperone HypC/HupF; TIGRFAM: Hydrogenase expression/formation protein, HupF/HypC; PFAM: Hydrogenase expression/formation protein, HupF/HypC YP_004696317.1 KEGG: dar:Daro_3966 hydrogenase formation HypD protein; TIGRFAM: Hydrogenase formation HypD protein; PFAM: Hydrogenase formation HypD protein YP_004696318.1 KEGG: rme:Rmet_1540 hydrogenase expression/formation protein HypE; TIGRFAM: Hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein, C-terminal; AIR synthase related protein YP_004696319.1 PFAM: Formyl transferase, N-terminal; Formyl transferase, C-terminal; Crotonase, core; KEGG: rme:Rmet_1541 formyl transferase-like protein YP_004696320.1 KEGG: nit:NAL212_0688 hypothetical protein YP_004696321.1 KEGG: nit:NAL212_1338 PEP motif anchor domain-containing protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_004696322.1 KEGG: nit:NAL212_0687 TraB family protein; TIGRFAM: Pheromone shutdown, TraB; PFAM: Pheromone shutdown-related, TraB YP_004696323.1 KEGG: nit:NAL212_0686 xenobiotic-transporting ATPase; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004696324.1 KEGG: nit:NAL212_0684 hypothetical protein YP_004696325.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: nit:NAL212_0685 TonB-dependent receptor YP_004696326.1 KEGG: nit:NAL212_0684 hypothetical protein YP_004696327.1 KEGG: nit:NAL212_0683 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, phosphotransfer (Hpt) region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, phosphotransfer (Hpt) region YP_004696328.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region; KEGG: tbd:Tbd_1269 response regulator receiver modulated diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region YP_004696329.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; Metal-dependent hydrolase HDOD; Signal transduction response regulator, receiver region; KEGG: nit:NAL212_0682 response regulator receiver modulated diguanylate cyclase; SMART: Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region YP_004696330.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: gme:Gmet_1669 TonB-dependent receptor, plug YP_004696331.1 KEGG: nit:NAL212_0684 hypothetical protein YP_004696332.1 PFAM: TonB-dependent receptor, plug; KEGG: gme:Gmet_1669 TonB-dependent receptor, plug YP_004696333.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: gme:Gmet_1669 TonB-dependent receptor, plug YP_004696334.1 KEGG: nit:NAL212_0684 hypothetical protein YP_004696335.1 KEGG: nit:NAL212_1623 hypothetical protein YP_004696336.1 KEGG: rfr:Rfer_0477 response regulator receiver domain-containing protein; PFAM: Signal transduction response regulator, receiver region; Tetratricopeptide TPR-4; Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SMART: Signal transduction response regulator, receiver region; Tetratricopeptide repeat YP_004696337.1 KEGG: rfr:Rfer_0478 histidine kinase; PFAM: ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like YP_004696338.1 PFAM: Protein of unknown function DUF2063; KEGG: nhl:Nhal_2720 hypothetical protein YP_004696339.1 KEGG: nit:NAL212_0680 hypothetical protein; HAMAP: UPF0276 protein; PFAM: Protein of unknown function DUF692 YP_004696340.1 KEGG: nit:NAL212_0679 hypothetical protein YP_004696341.1 KEGG: nit:NAL212_0678 hypothetical protein YP_004696342.1 manually curated; TIGRFAM: Flagellin assembly, membrane protein MviN; KEGG: nit:NAL212_0677 integral membrane protein MviN; PFAM: Flagellin assembly, membrane protein MviN YP_004696343.1 KEGG: nit:NAL212_2662 hypothetical protein; TIGRFAM: Protein of unknown function DUF198; PFAM: Protein of unknown function DUF198 YP_004696344.1 TIGRFAM: Deoxyxylulose-5-phosphate synthase; HAMAP: Deoxyxylulose-5-phosphate synthase; KEGG: nit:NAL212_2663 deoxyxylulose-5-phosphate synthase; PFAM: Transketolase-like, pyrimidine-binding domain; Dehydrogenase, E1 component; Transketolase, C-terminal YP_004696345.1 PFAM: Polyprenyl synthetase; KEGG: nit:NAL212_2664 geranyltranstransferase YP_004696346.1 TIGRFAM: Exonuclease VII, small subunit; HAMAP: Exonuclease VII, small subunit; KEGG: nit:NAL212_2665 exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit YP_004696347.1 KEGG: nit:NAL212_2666 hypothetical protein YP_004696348.1 KEGG: nit:NAL212_2667 hypothetical protein YP_004696349.1 KEGG: nit:NAL212_2668 hypothetical protein YP_004696350.1 PFAM: Permease YjgP/YjgQ, predicted; KEGG: nit:NAL212_2669 permease YjgP/YjgQ family protein YP_004696351.1 PFAM: Permease YjgP/YjgQ, predicted; KEGG: nit:NAL212_2670 permease YjgP/YjgQ family protein YP_004696352.1 KEGG: nit:NAL212_2671 CDP-alcohol phosphatidyltransferase YP_004696353.1 PFAM: Diacylglycerol kinase, catalytic region; KEGG: nit:NAL212_2672 diacylglycerol kinase catalytic region YP_004696354.1 KEGG: nit:NAL212_2673 hypothetical protein YP_004696355.1 PFAM: YaeQ; KEGG: nit:NAL212_2674 YaeQ family protein YP_004696357.1 KEGG: nit:NAL212_2676 hypothetical protein YP_004696358.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: nit:NAL212_2677 MotA/TolQ/ExbB proton channel YP_004696359.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: nit:NAL212_2678 biopolymer transport protein ExbD/TolR YP_004696360.1 KEGG: nit:NAL212_2679 hypothetical protein YP_004696361.1 KEGG: nit:NAL212_2686 hypothetical protein YP_004696362.1 PFAM: Glycoside hydrolase, family 19, catalytic; KEGG: nit:NAL212_2687 glycoside hydrolase 19 YP_004696363.1 TIGRFAM: DNA mismatch repair protein, N-terminal; HAMAP: DNA mismatch repair protein mutL; KEGG: nit:NAL212_2688 DNA mismatch repair protein MutL; PFAM: MutL, C-terminal, dimerisation; DNA mismatch repair protein, C-terminal; ATP-binding region, ATPase-like YP_004696364.1 KEGG: ttu:TERTU_4249 hypothetical protein YP_004696365.1 KEGG: nit:NAL212_2939 hypothetical protein; HAMAP: Protein of unknown function DUF299, phosphotransferase, predicted; PFAM: Protein of unknown function DUF299, phosphotransferase, predicted YP_004696366.1 KEGG: nit:NAL212_2940 phosphoenolpyruvate synthase; TIGRFAM: Phosphoenolpyruvate synthase; PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile region; PEP-utilising enzyme YP_004696367.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: nit:NAL212_2941 transcriptional regulator, LysR family YP_004696368.1 KEGG: nit:NAL212_2942 ribulose-bisphosphate carboxylase; HAMAP: Ribulose bisphosphate carboxylase large chain; PFAM: Ribulose bisphosphate carboxylase, large subunit, C-terminal; Ribulose bisphosphate carboxylase, large subunit, N-terminal YP_004696369.1 PFAM: Ribulose bisphosphate carboxylase, small chain; KEGG: nit:NAL212_2943 ribulose-bisphosphate carboxylase YP_004696370.1 TIGRFAM: CbxX/CfqX, monofunctional; PFAM: ATPase, AAA-type, core; KEGG: nit:NAL212_2944 CbbX protein; SMART: ATPase, AAA+ type, core YP_004696371.1 KEGG: nit:NAL212_2945 hypothetical protein YP_004696372.1 KEGG: nit:NAL212_2946 ketose-bisphosphate aldolase; TIGRFAM: Ketose-bisphosphate aldolase, class-II; PFAM: Ketose-bisphosphate aldolase, class-II YP_004696373.1 KEGG: mpo:Mpop_2666 peptidoglycan-binding domain 1 protein; TIGRFAM: Conserved hypothetical protein CHP02594; PFAM: Peptidoglycan binding-like YP_004696374.1 KEGG: nit:NAL212_0414 CheA signal transduction histidine kinase; PFAM: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; Signal transduction histidine kinase, phosphotransfer (Hpt) region; CheW-like protein; SMART: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; Signal transduction histidine kinase, phosphotransfer (Hpt) region; CheW-like protein YP_004696375.1 KEGG: nit:NAL212_0413 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; SMART: Chemotaxis methyl-accepting receptor, signalling YP_004696376.1 KEGG: nit:NAL212_0412 threonine dehydratase, biosynthetic; TIGRFAM: Threonine dehydratase I; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; Threonine dehydratase, C-terminal YP_004696377.1 PFAM: Nucleotidyltransferase; KEGG: nhl:Nhal_0891 DNA polymerase beta domain protein region YP_004696378.1 PFAM: Protein of unknown function DUF86; KEGG: nhl:Nhal_0890 protein of unknown function DUF86 YP_004696380.1 KEGG: dia:Dtpsy_2525 isxo7 transposase YP_004696382.1 PFAM: Exonuclease C-terminal; Exonuclease, RNase T/DNA polymerase III; KEGG: nit:NAL212_2927 exodeoxyribonuclease I YP_004696383.1 PFAM: Endoribonuclease L-PSP; KEGG: nit:NAL212_2926 endoribonuclease L-PSP YP_004696384.1 KEGG: nit:NAL212_2925 hypothetical protein YP_004696385.1 PFAM: Type II secretion system protein G; Prepilin-type cleavage/methylation, N-terminal; KEGG: nit:NAL212_2924 type II secretion system protein G YP_004696386.1 KEGG: nit:NAL212_2923 general secretion pathway GspG related transmembrane protein YP_004696387.1 PFAM: Type II/III secretion system; Secretin/TonB, short N-terminal; NolW-like; KEGG: nit:NAL212_2922 type II and III secretion system protein YP_004696388.1 KEGG: nit:NAL212_2921 prolin-rich transmembrane protein YP_004696389.1 KEGG: nit:NAL212_2920 transmembrane protein YP_004696390.1 KEGG: nit:NAL212_2919 fimbrial assembly family protein YP_004696391.1 KEGG: nit:NAL212_2918 hypothetical protein YP_004696392.1 PFAM: Type II secretion system protein E; KEGG: nit:NAL212_2917 type II secretion system protein E YP_004696393.1 PFAM: Type II secretion system F domain; KEGG: nit:NAL212_2916 type II secretion system F domain YP_004696394.1 KEGG: nit:NAL212_2915 general secretion pathway protein G; TIGRFAM: General secretion pathway protein G; Prepilin-type cleavage/methylation, N-terminal; PFAM: Type II secretion system protein G; Prepilin-type cleavage/methylation, N-terminal YP_004696395.1 PFAM: Peptidase, membrane zinc metallopeptidase, KEGG: nit:NAL212_2914 peptidase membrane zinc metallopeptidase YP_004696396.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; MASE1; PAS fold-4; PAS fold-3; PAS fold; Signal transduction response regulator, receiver region; KEGG: shl:Shal_0720 multi-sensor hybrid histidine kinase; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAC motif; PAS; Signal transduction response regulator, receiver region YP_004696397.1 PFAM: SirA-like; KEGG: nit:NAL212_2870 SirA-like domain-containing protein YP_004696398.1 PFAM: Peptidase U62, modulator of DNA gyrase; KEGG: nit:NAL212_3080 peptidase U62 modulator of DNA gyrase YP_004696399.1 KEGG: nit:NAL212_3079 hypothetical protein; HAMAP: UPF0307 protein yjgA; PFAM: Uncharacterised protein family UPF0307 YP_004696401.1 KEGG: nit:NAL212_3093 hypothetical protein YP_004696402.1 PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; KEGG: ddr:Deide_01740 peptidase S8/S53 subtilisin kexin sedolisin YP_004696403.1 PFAM: Ion transport 2; KEGG: nit:NAL212_0194 ion transport 2 domain-containing protein YP_004696404.1 KEGG: nit:NAL212_0193 hypothetical protein YP_004696405.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; MASE1; PAS fold-3; PAS fold-4; KEGG: nit:NAL212_0894 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAC motif; PAS YP_004696407.1 KEGG: nit:NAL212_2971 xenobiotic-transporting ATPase; PFAM: ABC transporter-like; ABC transporter, transmembrane region; SMART: ATPase, AAA+ type, core YP_004696408.1 TIGRFAM: Lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter-like; KEGG: nit:NAL212_2970 lipoprotein releasing system, ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004696409.1 KEGG: nit:NAL212_2969 lipoprotein releasing system, transmembrane protein, LolC/E family; TIGRFAM: Lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: Protein of unknown function DUF214, permase predicted YP_004696410.1 KEGG: nit:NAL212_2968 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp YP_004696411.1 PFAM: Transposase, IS4-like; KEGG: nit:NAL212_2951 transposase IS4 family protein YP_004696412.1 KEGG: sbm:Shew185_3408 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004696413.1 KEGG: nit:NAL212_2967 rare lipoprotein A; TIGRFAM: Rare lipoprotein A, bacterial; PFAM: Rare lipoprotein A YP_004696414.1 PFAM: Secretion protein HlyD; KEGG: nit:NAL212_0608 secretion protein HlyD family protein YP_004696415.1 KEGG: nit:NAL212_0609 hypothetical protein YP_004696416.1 PFAM: Glycosyl transferase, family 2; KEGG: nit:NAL212_0610 glycosyl transferase 2 YP_004696417.1 KEGG: nit:NAL212_0611 hypothetical protein YP_004696418.1 PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; KEGG: nit:NAL212_0833 subtilisin YP_004696419.1 KEGG: nit:NAL212_0834 hypothetical protein YP_004696420.1 KEGG: nit:NAL212_0835 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2 YP_004696421.1 TIGRFAM: Conserved hypothetical protein CHP02001; KEGG: nit:NAL212_0836 hypothetical protein YP_004696423.1 KEGG: nit:NAL212_2961 multicopper oxidase type 1 YP_004696424.1 KEGG: nit:NAL212_2960 hypothetical protein YP_004696425.1 KEGG: kse:Ksed_21480 hypothetical protein YP_004696426.1 KEGG: aar:Acear_0669 ABC transporter; PFAM: ABC transporter-like; ABC transporter, transmembrane region; SMART: ATPase, AAA+ type, core YP_004696427.1 KEGG: amd:AMED_5380 hypothetical protein YP_004696428.1 PFAM: Phosphate-selective porin O/P; KEGG: mei:Msip34_2149 phosphate-selective porin O and P YP_004696429.1 PFAM: Polyketide cyclase/dehydrase; KEGG: nit:NAL212_0676 polyketide cyclase/dehydrase YP_004696430.1 PFAM: O-methyltransferase, family 2; KEGG: nhl:Nhal_1752 O-methyltransferase 2 YP_004696431.1 PFAM: GTP-binding protein, HSR1-related; KEGG: nit:NAL212_2911 hypothetical protein YP_004696432.1 KEGG: nit:NAL212_2910 hypothetical protein YP_004696433.1 PFAM: Glutamine amidotransferase class-I, C-terminal; KEGG: nit:NAL212_2909 glutamine amidotransferase class-I YP_004696434.1 KEGG: neu:NE1352 hypothetical protein; TIGRFAM: Addiction module toxin, Txe/YoeB; PFAM: Addiction module toxin, Txe/YoeB YP_004696435.1 TIGRFAM: Prevent-host-death protein; KEGG: nwa:Nwat_1548 prevent-host-death family protein YP_004696436.1 PFAM: Sulphatase-modifying factor; KEGG: app:CAP2UW1_2305 hypothetical protein YP_004696437.1 KEGG: mca:MCA1289 hypothetical protein YP_004696438.1 KEGG: mme:Marme_2705 hypothetical protein YP_004696439.1 PFAM: Protein of unknown function DUF457, transmembrane; KEGG: nit:NAL212_2873 hypothetical protein YP_004696440.1 KEGG: pat:Patl_2702 alkaline phosphatase YP_004696441.1 KEGG: nit:NAL212_2974 dicarboxylate transport YP_004696442.1 KEGG: nit:NAL212_2973 hypothetical protein YP_004696443.1 PFAM: Uncharacterised conserved protein UCP025560; KEGG: nit:NAL212_2972 hypothetical protein YP_004696444.1 PFAM: Haemolysin-type calcium-binding region; KEGG: nit:NAL212_0192 hypothetical protein YP_004696445.1 KEGG: nit:NAL212_0191 polynucleotide adenylyltransferase/metal dependent phosphohydrolase; HAMAP: Multifunctional CCA protein; PFAM: Polynucleotide adenylyltransferase region; Metal-dependent phosphohydrolase, HD region, subdomain YP_004696446.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: nit:NAL212_0190 lytic transglycosylase catalytic YP_004696447.1 PFAM: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation region; KEGG: nit:NAL212_0189 glutamate dehydrogenase (NADP(+)) YP_004696448.1 KEGG: see:SNSL254_p_0173 rhs family protein; TIGRFAM: RHS repeat-associated core domain-containing protein; YD repeat; PFAM: YD repeat YP_004696449.1 KEGG: ecl:EcolC_0116 hypothetical protein YP_004696453.1 KEGG: xal:XALc_2110 hypothetical protein YP_004696455.1 KEGG: nit:NAL212_3097 hypothetical protein YP_004696456.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor region; KEGG: rfr:Rfer_1870 signal transduction histidine kinase, nitrate/nitrite-specific, NarQ; SMART: HAMP linker domain; PAS; ATP-binding region, ATPase-like YP_004696457.1 KEGG: net:Neut_1845 transmembrane protein YP_004696458.1 PFAM: MTH538 TIR-like domain; KEGG: gca:Galf_1431 hypothetical protein YP_004696459.1 KEGG: nit:NAL212_2828 hypothetical protein YP_004696460.1 PFAM: Protein of unknown function DUF488; KEGG: blb:BBMN68_520 protein YP_004696463.1 KEGG: nit:NAL212_1377 hypothetical protein YP_004696464.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: nit:NAL212_1375 transcriptional regulator, LysR family YP_004696465.1 KEGG: nit:NAL212_1947 hypothetical protein YP_004696466.1 PFAM: Protein of unknown function DUF1597; KEGG: nit:NAL212_2794 hypothetical protein YP_004696467.1 PFAM: Intradiol ring-cleavage dioxygenase, C-terminal; KEGG: nit:NAL212_2981 protocatechuate 3,4-dioxygenase YP_004696468.1 KEGG: nit:NAL212_2980 thioredoxin reductase; TIGRFAM: Thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004696469.1 KEGG: nit:NAL212_2979 Smr protein/MutS2; PFAM: Smr protein/MutS2 C-terminal; SMART: Smr protein/MutS2 C-terminal YP_004696470.1 KEGG: nit:NAL212_2978 transcriptional regulator, TraR/DksA family YP_004696471.1 PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: nit:NAL212_2977 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_004696472.1 PFAM: Major facilitator superfamily MFS-1; KEGG: nmu:Nmul_A0026 major facilitator transporter YP_004696473.1 PFAM: Restriction endonuclease, type IV-like, Mrr; KEGG: vfm:VFMJ11_A0652 restriction endonuclease YP_004696474.1 TIGRFAM: Addiction module antidote protein, HigA; PFAM: Helix-turn-helix type 3; Protein of unknown function DUF955; KEGG: cyt:cce_1126 hypothetical protein; SMART: Helix-turn-helix type 3 YP_004696475.1 PFAM: Plasmid maintenance system killer; KEGG: cki:Calkr_0087 hypothetical protein YP_004696476.1 KEGG: rsc:RCFBP_11248 hypothetical protein YP_004696477.1 KEGG: nit:NAL212_0062 transposase IS66; manually curated; PFAM: Transposase, IS66 YP_004696478.1 KEGG: nit:NAL212_0063 IS66 Orf2 family protein; manually curated; PFAM: Transposase (), IS66 Orf2 like YP_004696479.1 KEGG: nit:NAL212_0064 hypothetical protein YP_004696480.1 PFAM: Protein of unknown function DUF262; Protein of unknown function DUF1524 RloF; KEGG: dol:Dole_2238 hypothetical protein YP_004696481.1 TIGRFAM: Protein of unknown function DUF132; PFAM: PilT protein, N-terminal; KEGG: aca:ACP_3427 conserved hypothetical protein TIGR00305; SMART: Nucleotide binding protein, PINc YP_004696482.1 TIGRFAM: Prevent-host-death protein; KEGG: aca:ACP_3428 prevent-host-death family protein YP_004696483.1 PFAM: Restriction endonuclease, type I, S subunit, EcoBI; KEGG: mjl:Mjls_2226 restriction modification system DNA specificity subunit YP_004696484.1 KEGG: glo:Glov_2071 PilT protein domain protein YP_004696486.1 KEGG: nit:NAL212_0067 histone family protein DNA-binding protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein YP_004696488.1 PFAM: Phage antirepressor protein; Phage regulatory protein, Rha-like; KEGG: epy:EpC_20720 pahge-related protein YP_004696489.1 KEGG: xcv:XCV2222 hypothetical protein YP_004696490.1 KEGG: sbn:Sbal195_3111 hypothetical protein YP_004696491.1 KEGG: nmu:Nmul_A2183 hypothetical protein YP_004696492.1 PFAM: Integrase, catalytic core, phage; KEGG: rpf:Rpic12D_1016 integrase YP_004696493.1 KEGG: app:CAP2UW1_2168 hypothetical protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_004696494.1 KEGG: nit:NAL212_2339 hypothetical protein YP_004696495.1 KEGG: nit:NAL212_0226 type I site-specific deoxyribonuclease; PFAM: Restriction endonuclease, type I, EcoEI, R subunit/Type III, Res subunit, C-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal YP_004696496.1 PFAM: DNA methylase, adenine-specific; KEGG: nit:NAL212_0225 site-specific DNA-methyltransferase (adenine-specific) YP_004696497.1 SMART: ATPase, AAA+ type, core; KEGG: nit:NAL212_0224 AAA ATPase YP_004696498.1 PFAM: Restriction endonuclease, type I, S subunit, EcoBI; KEGG: ecl:EcolC_3719 restriction modification system DNA specificity subunit YP_004696499.1 KEGG: nit:NAL212_2273 hypothetical protein; HAMAP: UPF0061 protein ydiU; PFAM: Uncharacterised protein family UPF0061 YP_004696500.1 PFAM: NAD(P) transhydrogenase, beta subunit; KEGG: nit:NAL212_0651 NAD(P)(+) transhydrogenase (AB-specific) YP_004696501.1 KEGG: nit:NAL212_0650 transmembrane NAD(P) transhydrogenase (alpha subunit part 2) YP_004696502.1 PFAM: Alanine dehydrogenase/PNT, C-terminal; Alanine dehydrogenase/PNT, N-terminal; KEGG: nit:NAL212_0649 NAD(P)(+) transhydrogenase (AB-specific) YP_004696503.1 KEGG: nit:NAL212_0648 Hpt domain-containing protein; PFAM: Signal transduction histidine kinase, phosphotransfer (Hpt) region; SMART: Signal transduction histidine kinase, phosphotransfer (Hpt) region YP_004696504.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: nit:NAL212_0647 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_004696505.1 KEGG: hch:HCH_00967 FOG EAL domain-containing protein; PFAM: Diguanylate phosphodiesterase, predicted; Signal transduction response regulator, receiver region; SMART: Diguanylate phosphodiesterase, predicted; Signal transduction response regulator, receiver region YP_004696506.1 KEGG: nit:NAL212_0646 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004696507.1 TIGRFAM: Sulphate adenylyltransferase, large subunit; Small GTP-binding protein; HAMAP: Sulfate adenylyltransferase subunit 1; KEGG: nmu:Nmul_A1149 sulfate adenylyltransferase, large subunit; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2 YP_004696508.1 KEGG: nmu:Nmul_A1148 sulfate adenylyltransferase subunit 2; TIGRFAM: Sulphate adenylyltransferase, small subunit; PFAM: Phosphoadenosine phosphosulphate reductase YP_004696509.1 KEGG: nit:NAL212_0644 adenylylsulfate reductase, thioredoxin dependent; TIGRFAM: Adenylylsulphate reductase, thioredoxin dependent; Phosphoadenosine phosphosulphate reductase CysH-type; PFAM: Phosphoadenosine phosphosulphate reductase YP_004696510.1 PFAM: Uncharacterised conserved protein UCP030820; KEGG: nit:NAL212_0643 hypothetical protein YP_004696511.1 PFAM: Nitrite/sulphite reductase 4Fe-4S region; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like; KEGG: nit:NAL212_0642 ferredoxin--nitrite reductase YP_004696512.1 KEGG: nit:NAL212_0641 hypothetical protein YP_004696513.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: nit:NAL212_0640 transcriptional regulator, LysR family YP_004696514.1 KEGG: nit:NAL212_0639 hypothetical protein YP_004696515.1 KEGG: nit:NAL212_0638 hypothetical protein YP_004696516.1 PFAM: Mitochondrial inner membrane translocase complex, subunit Tim44-related; KEGG: nit:NAL212_0637 import inner membrane translocase subunit Tim44 YP_004696517.1 PFAM: Protein of unknown function DUF2165, transmembrane; KEGG: nit:NAL212_0636 hypothetical protein YP_004696518.1 PFAM: Protein of unknown function DUF336; KEGG: nit:NAL212_0634 hypothetical protein YP_004696519.1 manually curated; KEGG: nit:NAL212_0633 serine O-acetyltransferase YP_004696520.1 KEGG: nit:NAL212_0632 cysteine synthase; TIGRFAM: Cysteine synthase A; Cysteine synthase K/M; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit YP_004696521.1 KEGG: cce:Ccel_1543 cellulosome anchoring protein cohesin region; TIGRFAM: PEP-CTERM anchor; PFAM: Thrombospondin, C-terminal; PEP-CTERM bacterial YP_004696522.1 PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin, C-terminal; KEGG: bge:BC1002_4939 peroxidase YP_004696524.1 PFAM: Protein of unknown function DUF980; KEGG: nmu:Nmul_A1873 hypothetical protein YP_004696525.1 KEGG: bcd:BARCL_0364 hypothetical protein; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase YP_004696527.1 PFAM: Phosphoglycerate mutase; KEGG: rca:Rcas_2324 phosphoglycerate mutase YP_004696528.1 TIGRFAM: Prevent-host-death protein; KEGG: ppd:Ppro_2533 prevent-host-death family protein YP_004696529.1 KEGG: geb:GM18_1754 hypothetical protein YP_004696531.1 TIGRFAM: Prevent-host-death protein; KEGG: mag:amb1707 antitoxin of toxin-antitoxin stability system YP_004696532.1 KEGG: lch:Lcho_4295 hypothetical protein YP_004696535.1 PFAM: NnrS; KEGG: nit:NAL212_0293 NnrS family protein YP_004696536.1 KEGG: nit:NAL212_0291 PHP domain-containing protein; PFAM: PHP, C-terminal; SMART: Polymerase/histidinol phosphatase, N-terminal YP_004696537.1 KEGG: nit:NAL212_0290 SUA5/YciO/YrdC/YwlC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC; PFAM: Sua5/YciO/YrdC, N-terminal YP_004696538.1 PFAM: Peptidase M50; KEGG: nit:NAL212_0289 peptidase M50 YP_004696539.1 KEGG: nit:NAL212_0288 tryptophanyl-tRNA synthetase; TIGRFAM: Tryptophanyl-tRNA synthetase, class Ib; PFAM: Aminoacyl-tRNA synthetase, class Ib YP_004696540.1 KEGG: nit:NAL212_0287 chromosome segregation and condensation protein ScpA; HAMAP: Segregation and condensation protein A; PFAM: Prokaryotic chromosome segregation/condensation protein ScpA YP_004696541.1 KEGG: nit:NAL212_0286 chromosome segregation and condensation protein, ScpB; TIGRFAM: Chromosome segregation/condensation protein ScpB, prokaryote; PFAM: Chromosome segregation/condensation protein ScpB, prokaryote YP_004696542.1 PFAM: Inositol monophosphatase; KEGG: nit:NAL212_0282 inositol-phosphate phosphatase YP_004696543.1 KEGG: nit:NAL212_1338 PEP motif anchor domain-containing protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_004696544.1 KEGG: nit:NAL212_0281 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver region YP_004696545.1 KEGG: nit:NAL212_0281 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver region YP_004696546.1 PFAM: Multicopper oxidase, type 3; KEGG: nit:NAL212_0280 multicopper oxidase type 3 YP_004696547.1 PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 2; KEGG: nit:NAL212_0279 multicopper oxidase type 3 YP_004696548.1 PFAM: Transposase, IS4-like; KEGG: xbo:XBJ1_1885 transposase YP_004696549.1 KEGG: nit:NAL212_2959 hypothetical protein YP_004696550.1 TIGRFAM: Leucyl/phenylalanyl-tRNA-protein transferase; HAMAP: Leucyl/phenylalanyl-tRNA-protein transferase; KEGG: nit:NAL212_0205 leucyl/phenylalanyl-tRNA/protein transferase; PFAM: Leucyl/phenylalanyl-tRNA-protein transferase YP_004696551.1 KEGG: nit:NAL212_0204 arginyl-tRNA--protein transferase; HAMAP: Arginine-tRNA-protein transferase, predicted, prokaryotic; PFAM: Arginine-tRNA-protein transferase, C-terminal; Arginine-tRNA-protein transferase, N-terminal YP_004696552.1 TIGRFAM: Dihydroorotate dehydrogenase, class 2; HAMAP: Dihydroorotate dehydrogenase; KEGG: nit:NAL212_0203 dihydroorotate dehydrogenase; PFAM: Dihydroorotate dehydrogenase, class 1/ 2 YP_004696553.1 KEGG: nit:NAL212_0202 electron transport complex, RnfABCDGE type, B subunit; TIGRFAM: Electron transport complex, RnfB; PFAM: Fe-S cluster; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup YP_004696554.1 TIGRFAM: Endonuclease III/Nth; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; KEGG: nit:NAL212_0201 endonuclease III; SMART: HhH-GPD domain; Helix-hairpin-helix DNA-binding motif, class 1; Endonuclease III-like, iron-sulphur cluster loop motif YP_004696555.1 PFAM: Protein of unknown function DUF1841; KEGG: nit:NAL212_0200 hypothetical protein YP_004696556.1 PFAM: Cytochrome c, class I; KEGG: nit:NAL212_0199 cytochrome c class I YP_004696557.1 KEGG: nit:NAL212_0198 cytochrome c class I YP_004696558.1 KEGG: nit:NAL212_0197 ABC transporter-like protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004696559.1 PFAM: Heat shock protein Hsp20; KEGG: nit:NAL212_0196 heat shock protein HSP20 YP_004696560.1 KEGG: nit:NAL212_0195 hypothetical protein YP_004696562.1 KEGG: nwa:Nwat_2429 hypothetical protein YP_004696563.1 KEGG: yps:YPTB1833 hypothetical protein YP_004696564.1 PFAM: Protein of unknown function DUF45; KEGG: nit:NAL212_3099 hypothetical protein YP_004696565.1 KEGG: nit:NAL212_3100 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase YP_004696566.1 KEGG: nit:NAL212_3101 histidinol-phosphate phosphatase; TIGRFAM: Histidinol-phosphate phosphatase; HAD-superfamily hydrolase, subfamily IIIA; PFAM: Haloacid dehalogenase-like hydrolase YP_004696567.1 TIGRFAM: Glycyl-tRNA synthetase, class IIc, beta subunit; HAMAP: Glycyl-tRNA synthetase beta subunit; KEGG: nit:NAL212_3102 glycyl-tRNA synthetase, beta subunit YP_004696568.1 TIGRFAM: Glycyl-tRNA synthetase, class IIc, alpha subunit; HAMAP: Glycyl-tRNA synthetase, class IIc, alpha subunit; KEGG: nit:NAL212_3103 glycyl-tRNA synthetase, alpha subunit; PFAM: Glycyl-tRNA synthetase, class IIc, alpha subunit YP_004696569.1 TIGRFAM: Apolipoprotein N-acyltransferase; HAMAP: Apolipoprotein N-acyltransferase; KEGG: nit:NAL212_3104 apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004696570.1 PFAM: Tetratricopeptide TPR-1; KEGG: nit:NAL212_3105 hypothetical protein YP_004696571.1 TIGRFAM: Septum formation inhibitor MinC; HAMAP: Septum formation inhibitor MinC; KEGG: nit:NAL212_3106 septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC, C-terminal; Septum formation inhibitor MinC, N-terminal YP_004696572.1 KEGG: nit:NAL212_3107 septum site-determining protein MinD; TIGRFAM: Septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase YP_004696573.1 TIGRFAM: Septum formation topological specificity factor MinE; HAMAP: Septum formation topological specificity factor MinE; KEGG: nit:NAL212_3108 cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE YP_004696574.1 TIGRFAM: Outer membrane lipoprotein LolB; HAMAP: Outer-membrane lipoprotein lolB; KEGG: nit:NAL212_3109 outer-membrane lipoprotein LolB; PFAM: Outer membrane lipoprotein LolB YP_004696575.1 TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; KEGG: nit:NAL212_3110 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase, C-terminal YP_004696576.1 KEGG: nit:NAL212_3111 ribose-phosphate pyrophosphokinase; TIGRFAM: Phosphoribosyl pyrophosphokinase; PFAM: Phosphoribosyltransferase YP_004696577.1 TIGRFAM: Ribosomal protein L25; HAMAP: 50S ribosomal protein L25; Ribosomal protein L25; KEGG: nit:NAL212_3112 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: Ribosomal protein L25, N-terminal YP_004696578.1 TIGRFAM: Peptidyl-tRNA hydrolase; HAMAP: Peptidyl-tRNA hydrolase; KEGG: nit:NAL212_3113 peptidyl-tRNA hydrolase; PFAM: Peptidyl-tRNA hydrolase YP_004696579.1 KEGG: nit:NAL212_3114 GTP-binding protein YchF; TIGRFAM: Conserved hypothetical protein CHP00092; PFAM: Protein of unknown function DUF933; GTP-binding protein, HSR1-related YP_004696580.1 PFAM: Filamentation induced by cAMP/death on curing, related; KEGG: nit:NAL212_3115 filamentation induced by cAMP protein Fic YP_004696581.1 KEGG: ajs:Ajs_0195 type III restriction system methylase YP_004696582.1 KEGG: ajs:Ajs_0197 Eco57I restriction endonuclease YP_004696583.1 KEGG: cpb:Cphamn1_0745 hypothetical protein YP_004696584.1 KEGG: nla:NLA_6641 hypothetical protein; PFAM: Excinuclease ABC, C subunit, N-terminal; SMART: Excinuclease ABC, C subunit, N-terminal YP_004696585.1 KEGG: nit:NAL212_3117 RNA polymerase recycling-like protein; PFAM: SNF2-related; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004696586.1 PFAM: Protein of unknown function DUF2490; KEGG: nit:NAL212_3118 hypothetical protein YP_004696587.1 PFAM: Cytochrome c, class I; KEGG: nit:NAL212_3121 cytochrome c, class I YP_004696588.1 TIGRFAM: Oxygen-independent coproporphyrinogen III oxidase HemN; PFAM: HemN, C-terminal; Radical SAM; KEGG: nit:NAL212_3122 coproporphyrinogen dehydrogenase; SMART: Elongator protein 3/MiaB/NifB YP_004696589.1 KEGG: nit:NAL212_3123 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SMART: HTH transcriptional regulator, Crp; Cyclic nucleotide-binding YP_004696590.1 KEGG: nit:NAL212_3124 30S ribosomal protein S2; TIGRFAM: Ribosomal protein S2, bacteria/mitochondria/plastid; PFAM: Ribosomal protein S2 YP_004696591.1 TIGRFAM: Translation elongation factor EFTs/EF1B; HAMAP: Elongation factor Ts; KEGG: nit:NAL212_3125 translation elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B, dimerisation; Ubiquitin-associated/translation elongation factor EF1B, N-terminal YP_004696592.1 KEGG: nit:NAL212_3126 uridylate kinase; TIGRFAM: Uridylate kinase, bacteria; PFAM: Aspartate/glutamate/uridylate kinase YP_004696593.1 TIGRFAM: Ribosome recycling factor; HAMAP: Ribosome recycling factor, bacterial-like; KEGG: nit:NAL212_3127 ribosome recycling factor; PFAM: Ribosome recycling factor YP_004696594.1 TIGRFAM: Di-trans-poly-cis-decaprenylcistransferase-like; HAMAP: Undecaprenyl pyrophosphate synthase; KEGG: nit:NAL212_3128 undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase-like YP_004696595.1 PFAM: Phosphatidate cytidylyltransferase; KEGG: nit:NAL212_3129 phosphatidate cytidylyltransferase YP_004696596.1 TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; HAMAP: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; KEGG: nit:NAL212_3130 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal; 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal YP_004696597.1 KEGG: nit:NAL212_3131 membrane-associated zinc metalloprotease; TIGRFAM: Peptidase M50, membrane-associated zinc metallopeptidase; PFAM: Peptidase M50; PDZ/DHR/GLGF YP_004696598.1 KEGG: nit:NAL212_3132 outer membrane protein assembly complex, YaeT protein; TIGRFAM: Outer membrane assembly protein, YaeT; PFAM: Bacterial surface antigen (D15); Surface antigen variable number YP_004696599.1 KEGG: nit:NAL212_3133 outer membrane chaperone Skp (OmpH); manually curated; PFAM: Outer membrane chaperone Skp (OmpH) YP_004696600.1 TIGRFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; HAMAP: (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; KEGG: nit:NAL212_3134 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ YP_004696601.1 PFAM: Ribonuclease HII/HIII; KEGG: nit:NAL212_3135 ribonuclease H YP_004696602.1 KEGG: nit:NAL212_3136 peptidylprolyl isomerase FKBP-type YP_004696603.1 SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; TIGRFAM: DNA mismatch repair protein MutS, type 1; KEGG: nit:NAL212_3137 DNA mismatch repair protein MutS; HAMAP: DNA mismatch repair protein MutS, type 1; PFAM: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS-like, N-terminal; DNA mismatch repair protein MutS, connector; DNA mismatch repair protein MutS, core; DNA mismatch repair protein MutS, clamp YP_004696604.1 PFAM: Glutaredoxin; KEGG: tmz:Tmz1t_0130 glutaredoxin YP_004696605.1 KEGG: neu:NE1179 transmembrane protein YP_004696606.1 PFAM: Di-haem cytochrome c peroxidase; KEGG: net:Neut_1521 cytochrome-c peroxidase YP_004696608.1 KEGG: cyp:PCC8801_3794 hypothetical protein YP_004696609.1 KEGG: net:Neut_2275 hypothetical protein YP_004696610.1 PFAM: Peptidase M4, thermolysin C-terminal; Peptidase M4, thermolysin; KEGG: pfs:PFLU4216 metalloprotease YP_004696611.1 KEGG: mxa:MXAN_4012 hypothetical protein YP_004696612.1 SMART: Rhodanese-like; KEGG: nit:NAL212_3186 rhodanese-like protein YP_004696613.1 TIGRFAM: Pseudouridine synthase, RsuA and RluB/E/F; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: nit:NAL212_3185 pseudouridine synthase Rsu; SMART: RNA-binding S4 YP_004696614.1 PFAM: Methyltransferase type 12; KEGG: rrj:RrIowa_0829 methyltransferase YP_004696615.1 KEGG: nit:NAL212_3184 hypothetical protein YP_004696616.1 TIGRFAM: ATP-binding cassette protein, ChvD family; PFAM: ABC transporter-like; KEGG: nit:NAL212_3183 ATP-binding cassette protein, ChvD family; SMART: ATPase, AAA+ type, core YP_004696617.1 KEGG: tgr:Tgr7_1278 hypothetical protein YP_004696618.1 PFAM: CopG-like DNA-binding; KEGG: mrb:Mrub_0379 CopG domain-containing protein DNA-binding domain-containing protein YP_004696619.1 PFAM: RecF/RecN/SMC protein, N-terminal; KEGG: gvi:gll1843 hypothetical protein YP_004696620.1 KEGG: gvi:gll1842 hypothetical protein YP_004696621.1 PFAM: Protein of unknown function DUF748; KEGG: nit:NAL212_2894 hypothetical protein YP_004696622.1 PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; KEGG: nit:NAL212_2893 peptidylprolyl isomerase YP_004696623.1 PFAM: Protein of unknown function DUF454; KEGG: nit:NAL212_2892 hypothetical protein YP_004696625.1 TIGRFAM: PAS; PFAM: Chemotaxis methyl-accepting receptor, signalling; PAS fold-3; KEGG: nit:NAL212_0245 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; SMART: Chemotaxis methyl-accepting receptor, signalling YP_004696626.1 KEGG: psa:PST_1428 lipoprotein YP_004696627.1 KEGG: nhl:Nhal_2691 hypothetical protein YP_004696628.1 KEGG: nit:NAL212_2891 hypothetical protein YP_004696629.1 TIGRFAM: Diguanylate cyclase, predicted; Haemerythrin-like, metal-binding; PFAM: Diguanylate cyclase, predicted; Haemerythrin/HHE cation-binding motif; KEGG: ttu:TERTU_4682 HHE/GGDEF domain-containing protein; SMART: Diguanylate cyclase, predicted YP_004696630.1 PFAM: VanZ like protein; KEGG: nit:NAL212_2886 VanZ family protein YP_004696631.1 KEGG: nit:NAL212_2885 T/U mismatch-specific DNA glycosylase YP_004696632.1 TIGRFAM: Phosphoglycerate mutase 1; HAMAP: Phosphoglycerate mutase 1; KEGG: nit:NAL212_2884 phosphoglycerate mutase 1 family; PFAM: Phosphoglycerate mutase YP_004696633.1 PFAM: Fatty acid desaturase, type 1; KEGG: nit:NAL212_2883 fatty acid desaturase YP_004696634.1 KEGG: nit:NAL212_2882 hypothetical protein YP_004696635.1 PFAM: Nucleotidyl transferase; KEGG: nit:NAL212_2881 nucleotidyl transferase YP_004696636.1 PFAM: Aminotransferase, class V/Cysteine desulfurase; KEGG: nit:NAL212_2880 cysteine desulfurase YP_004696637.1 KEGG: hba:Hbal_2404 hypothetical protein YP_004696638.1 KEGG: nha:Nham_1072 tetratricopeptide TPR_2 YP_004696639.1 PFAM: Regulator of K+ conductance, N-terminal; KEGG: mpd:MCP_2384 hypothetical protein YP_004696640.1 KEGG: bxe:Bxe_C1257 hypothetical protein YP_004696641.1 SMART: Toll-Interleukin receptor; KEGG: pph:Ppha_1040 protein of unknown function DUF323 YP_004696642.1 PFAM: Rickettsia 17kDa surface antigen; KEGG: net:Neut_2403 OmpA/MotB domain-containing protein YP_004696643.1 KEGG: azo:azo3774 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; SMART: Serine/threonine-protein kinase domain; Tyrosine-protein kinase, subgroup, catalytic domain YP_004696644.1 KEGG: gau:GAU_3833 phosphoprotein phosphatase; PFAM: Protein phosphatase 2C, N-terminal; SMART: Protein phosphatase 2C-related YP_004696645.1 KEGG: gau:GAU_3831 hypothetical protein; PFAM: Forkhead-associated; SMART: Forkhead-associated YP_004696646.1 KEGG: nit:NAL212_0228 HhH-GPD family protein; PFAM: HhH-GPD domain; SMART: HhH-GPD domain YP_004696647.1 TIGRFAM: MraZ; HAMAP: MraZ; KEGG: nit:NAL212_0229 MraZ protein; PFAM: MraZ domain YP_004696648.1 TIGRFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; HAMAP: S-adenosyl-L-methionine-dependent methyltransferase, MraW; KEGG: nit:NAL212_0230 S-adenosyl-methyltransferase MraW; PFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW YP_004696649.1 KEGG: nit:NAL212_0231 cell division protein FtsL; TIGRFAM: Cell division protein, FtsL -like; PFAM: Cell division protein FtsL YP_004696650.1 PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: nit:NAL212_0232 peptidoglycan glycosyltransferase YP_004696651.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; HAMAP: UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; KEGG: nit:NAL212_0233 UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal YP_004696652.1 KEGG: nit:NAL212_0234 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal YP_004696653.1 TIGRFAM: Phospho-N-acetylmuramoyl-pentapeptide transferase; HAMAP: Phospho-N-acetylmuramoyl-pentapeptide transferase; KEGG: nit:NAL212_0235 phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: Glycosyl transferase, family 4, conserved region; Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site YP_004696654.1 TIGRFAM: UDP-N-acetylmuramoylalanine-D-glutamate ligase; HAMAP: UDP-N-acetylmuramoylalanine-D-glutamate ligase; KEGG: nit:NAL212_0236 UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase, central; Mur ligase, C-terminal YP_004696655.1 KEGG: nit:NAL212_0237 cell division protein FtsW; TIGRFAM: Cell division protein FtsW; PFAM: Cell cycle protein YP_004696656.1 TIGRFAM: N-acetylglucosaminyltransferase, MurG; HAMAP: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; KEGG: nit:NAL212_0238 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: Glycosyl transferase, family 28, C-terminal; Glycosyl transferase, family 28 YP_004696657.1 TIGRFAM: UDP-N-acetylmuramate-alanine ligase; HAMAP: UDP-N-acetylmuramate-alanine ligase; KEGG: nit:NAL212_0239 UDP-N-acetylmuramate/alanine ligase; PFAM: Mur ligase, N-terminal; Mur ligase, central; Mur ligase, C-terminal YP_004696658.1 TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; HAMAP: UDP-N-acetylenolpyruvoylglucosamine reductase; KEGG: nit:NAL212_0240 UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal; FAD linked oxidase, N-terminal YP_004696659.1 TIGRFAM: D-alanine--D-alanine ligase; HAMAP: D-alanine--D-alanine ligase; KEGG: nit:NAL212_0241 D-alanine--D-alanine ligase; PFAM: D-alanine--D-alanine ligase, C-terminal; D-alanine--D-alanine ligase, N-terminal YP_004696660.1 PFAM: Cell division protein FtsQ; Polypeptide-transport-associated, FtsQ-type; KEGG: nit:NAL212_0242 cell division protein FtsQ YP_004696661.1 KEGG: nit:NAL212_0243 cell division protein FtsA; TIGRFAM: Cell division protein family FtsA; PFAM: Cell division protein FtsA domain YP_004696662.1 KEGG: nit:NAL212_0244 cell division protein FtsZ; TIGRFAM: Cell division protein FtsZ, N-terminal; PFAM: Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain YP_004696663.1 PFAM: Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase; MCP methyltransferase, CheR-type; PAS fold-4; KEGG: aeh:Mlg_1118 MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor; SMART: MCP methyltransferase, CheR-type YP_004696664.1 KEGG: aeh:Mlg_1115 Crp/FNR family transcriptional regulator; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding YP_004696665.1 KEGG: nit:NAL212_0062 transposase IS66; manually curated; PFAM: Transposase, IS66 YP_004696666.1 KEGG: nit:NAL212_0063 IS66 Orf2 family protein; manually curated; PFAM: Transposase (), IS66 Orf2 like YP_004696667.1 KEGG: nit:NAL212_0064 hypothetical protein YP_004696668.1 KEGG: aeh:Mlg_1117 PAS/PAC sensor protein YP_004696669.1 KEGG: neu:NE2057 hypothetical protein YP_004696670.1 PFAM: Copper resistance D; Cytochrome c, class I; KEGG: neu:NE2058 cytochrome c, class IC:cytochrome c, class I YP_004696671.1 PFAM: Copper resistance protein CopC, core; KEGG: nmu:Nmul_A2761 copper resistance protein CopC YP_004696672.1 TIGRFAM: Bacitracin resistance protein BacA; HAMAP: Undecaprenyl-diphosphatase; KEGG: nit:NAL212_3187 undecaprenol kinase; PFAM: Bacitracin resistance protein BacA YP_004696673.1 TIGRFAM: Thiamine biosynthesis protein ThiC; HAMAP: Thiamine biosynthesis protein ThiC; KEGG: nit:NAL212_3188 thiamine biosynthesis protein ThiC; PFAM: Thiamine biosynthesis protein ThiC YP_004696674.1 KEGG: nit:NAL212_3189 protein-L-isoaspartate(D-aspartate) O-methyltransferase; PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; SMART: Ribosomal RNA adenine methylase transferase, N-terminal YP_004696675.1 KEGG: nit:NAL212_3190 type I secretion outer membrane protein, TolC family; TIGRFAM: Type I secretion outer membrane protein, TolC; PFAM: Outer membrane efflux protein YP_004696676.1 PFAM: Mechanosensitive ion channel MscS; KEGG: nit:NAL212_3191 MscS mechanosensitive ion channel YP_004696677.1 KEGG: nit:NAL212_3192 poly(A) polymerase; TIGRFAM: Poly(A) polymerase, PcnB; PFAM: Polynucleotide adenylyltransferase region YP_004696678.1 KEGG: nit:NAL212_3193 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; PFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK YP_004696679.1 TIGRFAM: Ketopantoate hydroxymethyltransferase; HAMAP: Ketopantoate hydroxymethyltransferase; KEGG: nit:NAL212_3194 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase YP_004696680.1 TIGRFAM: Pantoate-beta-alanine ligase; Cytidyltransferase-related; HAMAP: Pantoate-beta-alanine ligase; KEGG: nit:NAL212_3195 pantothenate synthetase; PFAM: Pantoate-beta-alanine ligase