-- dump date 20140619_164433 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 153948000001 SEQ_END SEQ_END NC_015221.1 63790 63790 DR NC_015221.1; contig end 63790..63790 Nitrosomonas sp. AL212 153948000002 SEQ_END SEQ_END NC_015222.1 3180526 3180526 DR NC_015222.1; contig end 3180526..3180526 Nitrosomonas sp. AL212 153948000003 SEQ_END SEQ_END NC_015223.1 92707 92707 DR NC_015223.1; contig end 92707..92707 Nitrosomonas sp. AL212 YP_004293219.1 CDS NAL212_0094 NC_015221.1 74 370 D KEGG: dat:HRM2_09780 hypothetical protein; TIGRFAM: Putative addiction module antidote protein, CC2985; PFAM: Uncharacterised protein family UPF0156/MetJ /Arc repressor; addiction module antidote protein 74..370 Nitrosomonas sp. AL212 10296665 YP_004293220.1 CDS NAL212_0095 NC_015221.1 357 704 D PFAM: Plasmid stabilisation system; KEGG: dat:HRM2_09770 hypothetical protein; plasmid stabilization system 357..704 Nitrosomonas sp. AL212 10296596 YP_004293221.1 CDS NAL212_0096 NC_015221.1 706 1656 D PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; KEGG: app:CAP2UW1_4555 integrase family protein; integrase family protein 706..1656 Nitrosomonas sp. AL212 10296597 YP_004293222.1 CDS NAL212_0097 NC_015221.1 1867 2301 R TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; KEGG: mms:mma_1754 putative transcriptional regulator MerR; SMART: HTH transcriptional regulator, MerR; transcriptional regulator, MerR family complement(1867..2301) Nitrosomonas sp. AL212 10296598 YP_004293223.1 CDS NAL212_0098 NC_015221.1 2373 2738 D PFAM: Mercuric transport protein MerT; KEGG: sty:HCM1.152 putative mercuric transport protein; mercuric transport protein merT 2373..2738 Nitrosomonas sp. AL212 10296599 YP_004293224.1 CDS NAL212_0099 NC_015221.1 2754 3035 D KEGG: net:Neut_2569 mercuric transport protein periplasmic component; TIGRFAM: Mercuric transport protein periplasmic component; PFAM: Heavy metal transport/detoxification protein; mercuric transport protein periplasmic component 2754..3035 Nitrosomonas sp. AL212 10296600 YP_004293225.1 CDS NAL212_0100 NC_015221.1 3063 3503 D KEGG: neu:NE0840 putative mercury transport protein MerC; putative mercury transport protein MerC 3063..3503 Nitrosomonas sp. AL212 10296601 YP_004293226.1 CDS NAL212_0101 NC_015221.1 3500 5185 D TIGRFAM: Mercury reductase, MerA; KEGG: see:SNSL254_p_0165 putative mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; Heavy metal transport/detoxification protein; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; mercuric reductase 3500..5185 Nitrosomonas sp. AL212 10296602 YP_004293227.1 CDS NAL212_0104 NC_015221.1 5885 6007 R KEGG: app:CAP2UW1_4618 hypothetical protein; hypothetical protein complement(5885..6007) Nitrosomonas sp. AL212 10296661 YP_004293228.1 CDS NAL212_0105 NC_015221.1 6120 6578 R PFAM: Lytic transglycosylase-like, catalytic; KEGG: axy:AXYL_06548 transglycosylase SLT domain-containing protein 6; lytic transglycosylase catalytic subunit complement(6120..6578) Nitrosomonas sp. AL212 10296604 YP_004293229.1 CDS NAL212_0106 NC_015221.1 6607 7698 R KEGG: pau:PA14_15540 putative mating pair formation protein TrbL; TIGRFAM: Conjugal transfer, TrbL; PFAM: Conjugal transfer, TrbL/VirB6; P-type conjugative transfer protein TrbL complement(6607..7698) Nitrosomonas sp. AL212 10296605 YP_004293230.1 CDS NAL212_0107 NC_015221.1 7747 7920 R KEGG: bce:BC3874 hypothetical protein; hypothetical protein complement(7747..7920) Nitrosomonas sp. AL212 10296606 YP_004293231.1 CDS NAL212_0108 NC_015221.1 7944 8744 R TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: axy:AXYL_06544 P-type conjugative transfer protein TrbJ; P-type conjugative transfer protein TrbJ complement(7944..8744) Nitrosomonas sp. AL212 10296607 YP_004293232.1 CDS NAL212_0109 NC_015221.1 8762 10153 R PFAM: Type IV secretion system, VirB10 / TraB / TrbI; KEGG: bam:Bamb_6628 conjugal transfer protein TrbI; conjugation TrbI family protein complement(8762..10153) Nitrosomonas sp. AL212 10296608 YP_004293233.1 CDS NAL212_0110 NC_015221.1 10166 10669 R PFAM: Conjugal transfer, TrbH; KEGG: app:CAP2UW1_4726 conjugal transfer protein TrbH; conjugal transfer TrbH family protein complement(10166..10669) Nitrosomonas sp. AL212 10296609 YP_004293234.1 CDS NAL212_0111 NC_015221.1 10672 11598 R KEGG: eba:p2B6 conjugal transfer protein TrbG; TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer, TrbG/VirB9/CagX; P-type conjugative transfer protein TrbG complement(10672..11598) Nitrosomonas sp. AL212 10296610 YP_004293235.1 CDS NAL212_0112 NC_015221.1 11613 12389 R PFAM: VirB8; KEGG: app:CAP2UW1_4728 conjugal transfer protein TrbF; VirB8 family protein complement(11613..12389) Nitrosomonas sp. AL212 10296611 YP_004293236.1 CDS NAL212_0113 NC_015221.1 12389 14923 R TIGRFAM: CagE, TrbE, VirB component of type IV transporter system; PFAM: CagE, TrbE, VirB component of type IV transporter system, central domain; KEGG: app:CAP2UW1_4729 conjugal transfer protein TrbE; SMART: ATPase, AAA+ type, core; type IV secretion/conjugal transfer ATPase, VirB4 family complement(12389..14923) Nitrosomonas sp. AL212 10296612 YP_004293237.1 CDS NAL212_0114 NC_015221.1 14920 15231 R KEGG: ajs:Ajs_4272 conjugal transfer protein TrbD; conjugal transfer protein TrbD complement(14920..15231) Nitrosomonas sp. AL212 10296613 YP_004293238.1 CDS NAL212_0115 NC_015221.1 15250 15663 R PFAM: Conjugal transfer,TrbC; KEGG: eba:p2B3 conjugal transfer protein TrbC; conjugal transfer protein Trbc complement(15250..15663) Nitrosomonas sp. AL212 10296614 YP_004293239.1 CDS NAL212_0117 NC_015221.1 16203 17183 D PFAM: Transposase, IS4-like; KEGG: atu:Atu4436 IS5 family transposase; transposase IS4 family protein 16203..17183 Nitrosomonas sp. AL212 10296662 YP_004293240.1 CDS NAL212_0118 NC_015221.1 17930 18292 R KEGG: app:CAP2UW1_4733 conjugal transfer protein TrbA; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; helix-turn-helix domain-containing protein complement(17930..18292) Nitrosomonas sp. AL212 10296616 YP_004293241.1 CDS NAL212_0119 NC_015221.1 18316 18471 R hypothetical protein complement(18316..18471) Nitrosomonas sp. AL212 10296617 YP_004293242.1 CDS NAL212_0120 NC_015221.1 18720 19784 D TIGRFAM: ParB-like partition protein; PFAM: Transcriptional repressor protein, KorB; ParB-like nuclease; KEGG: axy:AXYL_06612 transcriptional repressor protein KorB; SMART: ParB-like nuclease; parB-like partition protein 18720..19784 Nitrosomonas sp. AL212 10296618 YP_004293243.1 CDS NAL212_0121 NC_015221.1 19781 20146 D KEGG: eba:p2A235 putative conjugation protein TraO; putative conjugation protein TraO 19781..20146 Nitrosomonas sp. AL212 10296619 YP_004293244.1 CDS NAL212_0122 NC_015221.1 20735 21133 R PFAM: PilT protein, N-terminal; KEGG: rmr:Rmar_0550 PilT protein domain protein; PilT protein domain-containing protein complement(20735..21133) Nitrosomonas sp. AL212 10296620 YP_004293245.1 CDS NAL212_0123 NC_015221.1 21130 21324 R PFAM: Protein of unknown function DUF2191; KEGG: gpb:HDN1F_25630 hypothetical protein; hypothetical protein complement(21130..21324) Nitrosomonas sp. AL212 10296621 YP_004293246.1 CDS NAL212_0124 NC_015221.1 21795 22427 D PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: mea:Mex_p20006 hypothetical protein; cobyrinic acid ac-diamide synthase 21795..22427 Nitrosomonas sp. AL212 10296622 YP_004293247.1 CDS NAL212_0125 NC_015221.1 22447 22767 D KEGG: mch:Mchl_3698 hypothetical protein; hypothetical protein 22447..22767 Nitrosomonas sp. AL212 10296623 YP_004293248.1 CDS NAL212_0127 NC_015221.1 23545 23769 R TIGRFAM: Transcription regulator AbrB; PFAM: Transcription regulator AbrB/SpoV, predicted; KEGG: gur:Gura_3174 AbrB family transcriptional regulator; SMART: Transcription regulator AbrB/SpoV, predicted; transcriptional regulator, AbrB family complement(23545..23769) Nitrosomonas sp. AL212 10296663 YP_004293249.1 CDS NAL212_0128 NC_015221.1 24098 25282 D SMART: ATPase, AAA+ type, core; KEGG: phe:Phep_1072 AAA ATPase; AAA ATPase 24098..25282 Nitrosomonas sp. AL212 10296625 YP_004293250.1 CDS NAL212_0129 NC_015221.1 25487 25717 D PFAM: Protein of unknown function DUF433; KEGG: hde:HDEF_1049 hypothetical protein; hypothetical protein 25487..25717 Nitrosomonas sp. AL212 10296626 YP_004293251.1 CDS NAL212_0131 NC_015221.1 26848 27960 R KEGG: nmu:Nmul_B2812 hypothetical protein; hypothetical protein complement(26848..27960) Nitrosomonas sp. AL212 10296664 YP_004293252.1 CDS NAL212_0132 NC_015221.1 28003 28446 R KEGG: llo:LLO_2896 TraM protein; TraM protein complement(28003..28446) Nitrosomonas sp. AL212 10296628 YP_004293253.1 CDS NAL212_0133 NC_015221.1 28443 29174 R PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: reu:Reut_D6529 conjugal transfer protein TraL; cobyrinic acid ac-diamide synthase complement(28443..29174) Nitrosomonas sp. AL212 10296629 YP_004293254.1 CDS NAL212_0134 NC_015221.1 29174 29515 R KEGG: xfn:XfasM23_2251 hypothetical protein; hypothetical protein complement(29174..29515) Nitrosomonas sp. AL212 10296630 YP_004293255.1 CDS NAL212_0135 NC_015221.1 29885 30238 D KEGG: bcj:BCAL0172 conjugal transfer relaxosome component TraJ; conjugal transfer relaxosome component TraJ 29885..30238 Nitrosomonas sp. AL212 10296631 YP_004293256.1 CDS NAL212_0136 NC_015221.1 30254 31888 D PFAM: Endonuclease relaxase, MobA/VirD2; KEGG: app:CAP2UW1_4640 conjugal transfer relaxase TraI; relaxase/mobilization nuclease family protein 30254..31888 Nitrosomonas sp. AL212 10296632 YP_004293257.1 CDS NAL212_0137 NC_015221.1 31888 33732 D PFAM: Ti-type conjugative transfer system, TraG-like; KEGG: app:CAP2UW1_4641 conjugal transfer coupling protein TraG; TRAG family protein 31888..33732 Nitrosomonas sp. AL212 10296633 YP_004293258.1 CDS NAL212_0138 NC_015221.1 33762 34301 D KEGG: bam:Bamb_6613 conjugal transfer peptidase TraF; TIGRFAM: Peptidase S26C, conjugative transfer signal peptidase TraF; PFAM: Peptidase S26, conserved region; conjugative transfer signal peptidase TraF 33762..34301 Nitrosomonas sp. AL212 10296634 YP_004293259.1 CDS NAL212_0139 NC_015221.1 34320 34538 D KEGG: eba:p2B16 conjugal transfer protein, TraD; conjugal transfer protein, TraD 34320..34538 Nitrosomonas sp. AL212 10296635 YP_004293260.1 CDS NAL212_0140 NC_015221.1 34525 37416 D KEGG: app:CAP2UW1_4644 hypothetical protein; PFAM: Domain of unknown function DUF1738; Toprim domain; SMART: Toprim domain; hypothetical protein 34525..37416 Nitrosomonas sp. AL212 10296636 YP_004293261.1 CDS NAL212_0141 NC_015221.1 37436 38557 D PFAM: Uncharacterised protein family UPF0758; KEGG: cpi:Cpin_1532 DNA repair protein RadC; DNA repair protein RadC 37436..38557 Nitrosomonas sp. AL212 10296637 YP_004293262.1 CDS NAL212_0142 NC_015221.1 38675 39772 D PFAM: Transposase, IS4-like; KEGG: tgr:Tgr7_3025 transposase IS4 family protein; transposase IS4 family protein 38675..39772 Nitrosomonas sp. AL212 10296638 YP_004293263.1 CDS NAL212_0143 NC_015221.1 40343 40861 D KEGG: nmu:Nmul_A1680 cytochrome c family protein; cytochrome c family protein 40343..40861 Nitrosomonas sp. AL212 10296639 YP_004293264.1 CDS NAL212_0144 NC_015221.1 41022 41381 D KEGG: saq:Sare_4146 dipeptidyl-peptidase IV; hypothetical protein 41022..41381 Nitrosomonas sp. AL212 10296640 YP_004293265.1 CDS NAL212_0145 NC_015221.1 41654 41905 R SMART: Regulatory protein, FmdB, putative; manually curated; KEGG: nhl:Nhal_2319 regulatory protein, FmdB family; TIGRFAM: Regulatory protein, FmdB, putative; PFAM: Regulatory protein, FmdB, putative; regulatory protein, FmdB family complement(41654..41905) Nitrosomonas sp. AL212 10296641 YP_004293266.1 CDS NAL212_0146 NC_015221.1 42003 42656 R KEGG: mmi:MMAR_1420 carbonic anhydrase, CynT; PFAM: Carbonic anhydrase; SMART: Carbonic anhydrase; carbonic anhydrase complement(42003..42656) Nitrosomonas sp. AL212 10296642 YP_004293267.1 CDS NAL212_0147 NC_015221.1 42924 44486 D KEGG: nhl:Nhal_3060 sigma-54 factor interaction domain-containing protein; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; sigma54 specific transcriptional regulator, Fis family 42924..44486 Nitrosomonas sp. AL212 10296643 YP_004293268.1 CDS NAL212_0148 NC_015221.1 44764 45120 R KEGG: nmu:Nmul_A1630 hypothetical protein; hypothetical protein complement(44764..45120) Nitrosomonas sp. AL212 10296644 YP_004293269.1 CDS NAL212_0149 NC_015221.1 45262 47469 R TIGRFAM: ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; ATPase, P-type, heavy metal translocating; KEGG: nmu:Nmul_A2005 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase; copper-translocating P-type ATPase complement(45262..47469) Nitrosomonas sp. AL212 10296645 YP_004293270.1 CDS NAL212_0150 NC_015221.1 47536 47889 R KEGG: nmu:Nmul_A1630 hypothetical protein; hypothetical protein complement(47536..47889) Nitrosomonas sp. AL212 10296646 YP_004293271.1 CDS NAL212_0152 NC_015221.1 48404 49303 R PFAM: Integrase, catalytic core; KEGG: pde:Pden_3846 integrase catalytic subunit; integrase catalytic region complement(48404..49303) Nitrosomonas sp. AL212 10296647 YP_004293272.1 CDS NAL212_0153 NC_015221.1 49303 49623 R PFAM: Transposase IS3/IS911family; KEGG: alv:Alvin_1732 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein complement(49303..49623) Nitrosomonas sp. AL212 10296648 YP_004293273.1 CDS NAL212_0154 NC_015221.1 50200 52902 R SMART: ATPase, P-type cation-transporter, N-terminal; TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: lpp:lpp2364 hypothetical protein; PFAM: ATPase, P-type, ATPase-associated domain; ATPase, P-type cation-transporter, C-terminal; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase; ATPase, P-type (transporting), HAD superfamily, subfamily IC complement(50200..52902) Nitrosomonas sp. AL212 10296649 YP_004293274.1 CDS NAL212_0155 NC_015221.1 52899 53558 R PFAM: Methyltransferase type 11; KEGG: aoe:Clos_1084 methyltransferase type 11; methyltransferase type 11 complement(52899..53558) Nitrosomonas sp. AL212 10296650 YP_004293275.1 CDS NAL212_0156 NC_015221.1 53555 56704 R KEGG: nmu:Nmul_A1406 heavy metal efflux pump CzcA; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein; heavy metal efflux pump, CzcA family complement(53555..56704) Nitrosomonas sp. AL212 10296651 YP_004293276.1 CDS NAL212_0157 NC_015221.1 56706 58298 R KEGG: nmu:Nmul_A1407 secretion protein HlyD; TIGRFAM: Secretion protein HlyD; PFAM: Copper binding periplasmic protein CusF; RND family efflux transporter MFP subunit complement(56706..58298) Nitrosomonas sp. AL212 10296652 YP_004293277.1 CDS NAL212_0158 NC_015221.1 58323 59687 R PFAM: Outer membrane efflux protein; KEGG: nmu:Nmul_A1408 outer membrane efflux protein; outer membrane efflux protein complement(58323..59687) Nitrosomonas sp. AL212 10296653 YP_004293278.1 CDS NAL212_0159 NC_015221.1 59684 60106 R PFAM: Copper binding periplasmic protein CusF; KEGG: tbd:Tbd_1326 hypothetical protein; copper binding periplasmic protein cusF complement(59684..60106) Nitrosomonas sp. AL212 10296654 YP_004293279.1 CDS NAL212_0160 NC_015221.1 60262 60603 R KEGG: ppp:PHYPADRAFT_178680 hypothetical protein; hypothetical protein complement(60262..60603) Nitrosomonas sp. AL212 10296655 YP_004293280.1 CDS NAL212_0161 NC_015221.1 60709 61065 R KEGG: nmu:Nmul_A1630 hypothetical protein; hypothetical protein complement(60709..61065) Nitrosomonas sp. AL212 10296656 YP_004293281.1 CDS NAL212_0162 NC_015221.1 61435 62787 R KEGG: rso:RSp0584 ISRSO9-transposase protein; ISRSO9-transposase protein complement(61435..62787) Nitrosomonas sp. AL212 10296657 YP_004293282.1 CDS NAL212_0163 NC_015221.1 63056 63397 R PFAM: PemK-like protein; KEGG: neu:NE1181 PemK-like protein; transcriptional modulator of MazE/toxin, MazF complement(63056..63397) Nitrosomonas sp. AL212 10296658 YP_004293283.1 CDS NAL212_0164 NC_015221.1 63390 63620 R KEGG: neu:NE1182 CopG family protein; CopG family protein complement(63390..63620) Nitrosomonas sp. AL212 10296659 YP_004293284.1 CDS NAL212_0165 NC_015222.1 17 1441 D TIGRFAM: Chromosomal replication control, initiator DnaA; PFAM: Chromosomal replication control, initiator (DnaA)/regulator (Hda); Chromosomal replication initiator, DnaA C-terminal; KEGG: net:Neut_0001 chromosomal replication initiation protein; SMART: Chromosomal replication initiator, DnaA C-terminal; ATPase, AAA+ type, core; chromosomal replication initiator protein DnaA 17..1441 Nitrosomonas sp. AL212 10299742 YP_004293285.1 CDS NAL212_0166 NC_015222.1 1631 2746 D SMART: DNA polymerase III, beta chain; TIGRFAM: DNA polymerase III, beta chain; KEGG: nmu:Nmul_A0002 DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain, central; DNA polymerase III, beta chain, C-terminal; DNA polymerase III, beta chain, N-terminal; DNA polymerase III subunit beta 1631..2746 Nitrosomonas sp. AL212 10296667 YP_004293286.1 CDS NAL212_0167 NC_015222.1 2826 5246 D SMART: DNA topoisomerase, type IIA, subunit B/N-terminal; ATPase-like, ATP-binding domain; TIGRFAM: DNA gyrase, subunit B; KEGG: nmu:Nmul_A0003 DNA gyrase subunit B; PFAM: DNA topoisomerase, type IIA, subunit B, domain 2; ATPase-like, ATP-binding domain; DNA topoisomerase, type IIA, subunit B, C-terminal; DNA gyrase subunit B 2826..5246 Nitrosomonas sp. AL212 10296668 YP_004293287.1 CDS NAL212_0168 NC_015222.1 5304 6278 D PFAM: Endonuclease/exonuclease/phosphatase; KEGG: lba:Lebu_1528 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 5304..6278 Nitrosomonas sp. AL212 10296669 YP_004293288.1 CDS NAL212_0169 NC_015222.1 6344 8158 R KEGG: nmu:Nmul_A1770 GTP-binding protein TypA; TIGRFAM: GTP-binding protein TypA; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal; GTP-binding protein TypA complement(6344..8158) Nitrosomonas sp. AL212 10296670 YP_004293289.1 CDS NAL212_0170 NC_015222.1 8279 9238 D PFAM: Ornithine cyclodeaminase/mu-crystallin; KEGG: mlo:mlr2282 ornithine cyclodeaminase; ornithine cyclodeaminase/mu-crystallin 8279..9238 Nitrosomonas sp. AL212 10296671 YP_004293290.1 CDS NAL212_0171 NC_015222.1 9244 9441 R KEGG: neu:NE2387 hypothetical protein; hypothetical protein complement(9244..9441) Nitrosomonas sp. AL212 10296672 YP_004293291.1 CDS NAL212_0172 NC_015222.1 9587 9910 D PFAM: Divalent ion tolerance protein, CutA1; KEGG: net:Neut_0847 CutA1 divalent ion tolerance protein; CutA1 divalent ion tolerance protein 9587..9910 Nitrosomonas sp. AL212 10296673 YP_004293292.1 CDS NAL212_0173 NC_015222.1 9923 11860 D KEGG: net:Neut_0846 protein-disulfide reductase; PFAM: Cytochrome c assembly protein, transmembrane domain; Thioredoxin domain; protein-disulfide reductase 9923..11860 Nitrosomonas sp. AL212 10296674 YP_004293293.1 CDS NAL212_0174 NC_015222.1 11925 12512 D PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; KEGG: nmu:Nmul_A2682 thioredoxin; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen 11925..12512 Nitrosomonas sp. AL212 10296675 YP_004293294.1 CDS NAL212_0175 NC_015222.1 12844 13182 D PFAM: Transport-associated; KEGG: net:Neut_0492 transport-associated; transport-associated protein 12844..13182 Nitrosomonas sp. AL212 10296676 YP_004293295.1 CDS NAL212_0176 NC_015222.1 13437 13811 D PFAM: Protein of unknown function DUF2784; KEGG: net:Neut_1861 hypothetical protein; hypothetical protein 13437..13811 Nitrosomonas sp. AL212 10296677 YP_004293296.1 CDS NAL212_0177 NC_015222.1 13808 14716 R PFAM: tRNA(Ile)-lysidine/2-thiocytidine synthase; KEGG: nmu:Nmul_A0509 C32 tRNA thiolase; PP-loop domain-containing protein complement(13808..14716) Nitrosomonas sp. AL212 10296678 YP_004293297.1 CDS NAL212_0178 NC_015222.1 14877 15329 D PFAM: Blue (type 1) copper domain; KEGG: neu:NE1491 putative copper-containing oxidoreductase signal peptide protein; blue (type 1) copper domain-containing protein 14877..15329 Nitrosomonas sp. AL212 10296679 YP_004293298.1 CDS NAL212_0179 NC_015222.1 15326 15865 D PFAM: Protein of unknown function DUF411; KEGG: net:Neut_0755 hypothetical protein; hypothetical protein 15326..15865 Nitrosomonas sp. AL212 10296680 YP_004293299.1 CDS NAL212_0180 NC_015222.1 15879 16346 D PFAM: Cytochrome c, class I; KEGG: nmu:Nmul_A0573 cytochrome c, class I; cytochrome c class I 15879..16346 Nitrosomonas sp. AL212 10296681 YP_004293300.1 CDS NAL212_0181 NC_015222.1 16370 16774 R KEGG: neu:NE2318 hypothetical protein; hypothetical protein complement(16370..16774) Nitrosomonas sp. AL212 10296682 YP_004293301.1 CDS NAL212_0182 NC_015222.1 17224 17931 R KEGG: nmu:Nmul_A0435 phosphate uptake regulator, PhoU; TIGRFAM: PhoU; PFAM: PhoU; phosphate uptake regulator PhoU complement(17224..17931) Nitrosomonas sp. AL212 10296683 YP_004293302.1 CDS NAL212_0183 NC_015222.1 17990 18649 R TIGRFAM: Ribose 5-phosphate isomerase, type A; KEGG: net:Neut_1829 ribose-5-phosphate isomerase A; PFAM: Ribose 5-phosphate isomerase, type A; ribose 5-phosphate isomerase complement(17990..18649) Nitrosomonas sp. AL212 10296684 YP_004293303.1 CDS NAL212_0184 NC_015222.1 18969 20033 R TIGRFAM: Fructose-bisphosphate aldolase, class II, Calvin cycle subtype; Ketose-bisphosphate aldolase, class-II; KEGG: nmu:Nmul_A0384 fructose-1,6-bisphosphate aldolase; PFAM: Ketose-bisphosphate aldolase, class-II; fructose-bisphosphate aldolase complement(18969..20033) Nitrosomonas sp. AL212 10296685 YP_004293304.1 CDS NAL212_0185 NC_015222.1 20172 21623 R TIGRFAM: Pyruvate kinase; KEGG: nmu:Nmul_A0385 pyruvate kinase; PFAM: Pyruvate kinase, barrel; Pyruvate kinase, C-terminal-like; pyruvate kinase complement(20172..21623) Nitrosomonas sp. AL212 10296686 YP_004293305.1 CDS NAL212_0186 NC_015222.1 21638 22816 R HAMAP: Phosphoglycerate kinase; KEGG: neu:NE0326 phosphoglycerate kinase; PFAM: Phosphoglycerate kinase; phosphoglycerate kinase complement(21638..22816) Nitrosomonas sp. AL212 10296687 YP_004293306.1 CDS NAL212_0187 NC_015222.1 22950 23948 R SMART: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: nmu:Nmul_A0387 glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; glyceraldehyde-3-phosphate dehydrogenase complement(22950..23948) Nitrosomonas sp. AL212 10296688 YP_004293307.1 CDS NAL212_0188 NC_015222.1 24029 26047 R SMART: Transketolase-like, pyrimidine-binding domain; TIGRFAM: Transketolase, bacterial-like; KEGG: nmu:Nmul_A0388 transketolase; PFAM: Transketolase, N-terminal; Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; transketolase complement(24029..26047) Nitrosomonas sp. AL212 10296689 YP_004293308.1 CDS NAL212_0189 NC_015222.1 26346 27689 D PFAM: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain; KEGG: neu:NE1616 glutamate dehydrogenase; SMART: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; glutamate dehydrogenase 26346..27689 Nitrosomonas sp. AL212 10296690 YP_004293309.1 CDS NAL212_0190 NC_015222.1 27739 29763 D PFAM: Lytic transglycosylase-like, catalytic; KEGG: net:Neut_0502 lytic transglycosylase, catalytic; Lytic transglycosylase catalytic 27739..29763 Nitrosomonas sp. AL212 10296691 YP_004293310.1 CDS NAL212_0191 NC_015222.1 29782 31008 D KEGG: nmu:Nmul_A2451 multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; HAMAP: tRNA nucleotidyltransferase, proteobacteria; PFAM: Poly A polymerase, head domain; Metal-dependent phosphohydrolase, HD subdomain; polynucleotide adenylyltransferase/metal dependent phosphohydrolase 29782..31008 Nitrosomonas sp. AL212 10296692 YP_004293311.1 CDS NAL212_0192 NC_015222.1 31117 32202 D KEGG: mag:amb3422 hypothetical protein; hypothetical protein 31117..32202 Nitrosomonas sp. AL212 10296693 YP_004293312.1 CDS NAL212_0193 NC_015222.1 32284 33108 R KEGG: dat:HRM2_17520 hypothetical protein; hypothetical protein complement(32284..33108) Nitrosomonas sp. AL212 10296694 YP_004293313.1 CDS NAL212_0194 NC_015222.1 33219 33689 D PFAM: Ion transport 2; KEGG: nmu:Nmul_A1691 K+ channel, pore region; Ion transport 2 domain-containing protein 33219..33689 Nitrosomonas sp. AL212 10296695 YP_004293314.1 CDS NAL212_0195 NC_015222.1 33965 34609 D KEGG: neu:NE0372 hypothetical protein; hypothetical protein 33965..34609 Nitrosomonas sp. AL212 10296696 YP_004293315.1 CDS NAL212_0196 NC_015222.1 34834 35259 D PFAM: Heat shock protein Hsp20; KEGG: nmu:Nmul_A1762 heat shock protein HSP20; heat shock protein Hsp20 34834..35259 Nitrosomonas sp. AL212 10296697 YP_004293316.1 CDS NAL212_0197 NC_015222.1 35418 37349 D KEGG: nmu:Nmul_A2700 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter 35418..37349 Nitrosomonas sp. AL212 10296698 YP_004293317.1 CDS NAL212_0198 NC_015222.1 37451 37777 D PFAM: Cytochrome c, class I; KEGG: net:Neut_1652 cytochrome c, class IC:cytochrome c, class I; cytochrome c class I 37451..37777 Nitrosomonas sp. AL212 10296699 YP_004293318.1 CDS NAL212_0199 NC_015222.1 37805 38134 D PFAM: Cytochrome c, class I; KEGG: net:Neut_1651 cytochrome c, class I; cytochrome c class I 37805..38134 Nitrosomonas sp. AL212 10296700 YP_004293319.1 CDS NAL212_0200 NC_015222.1 38217 38645 R PFAM: Protein of unknown function DUF1841; KEGG: neu:NE0737 hypothetical protein; hypothetical protein complement(38217..38645) Nitrosomonas sp. AL212 10296701 YP_004293320.1 CDS NAL212_0201 NC_015222.1 38659 39291 R SMART: HhH-GPD domain; Helix-hairpin-helix DNA-binding motif, class 1; Endonuclease III-like, iron-sulphur cluster loop motif; TIGRFAM: Endonuclease III/Nth; KEGG: net:Neut_0644 endonuclease III; PFAM: HhH-GPD domain; Helix-hairpin-helix motif; endonuclease III complement(38659..39291) Nitrosomonas sp. AL212 10296702 YP_004293321.1 CDS NAL212_0202 NC_015222.1 39288 39971 R KEGG: mms:mma_0717 electron transport complex protein RnfB; TIGRFAM: Electron transport complex, RnfB; PFAM: Putative Fe-S cluster; 4Fe-4S binding domain; RnfABCDGE type electron transport complex subunit B complement(39288..39971) Nitrosomonas sp. AL212 10296703 YP_004293322.1 CDS NAL212_0203 NC_015222.1 39984 41006 R TIGRFAM: Dihydroorotate dehydrogenase, class 2; KEGG: nmu:Nmul_A2706 dihydroorotate dehydrogenase 2; PFAM: Dihydroorotate dehydrogenase, class 1/ 2; dihydroorotate dehydrogenase complement(39984..41006) Nitrosomonas sp. AL212 10296704 YP_004293323.1 CDS NAL212_0204 NC_015222.1 41048 41755 R KEGG: nmu:Nmul_A2708 arginyl-tRNA-protein transferase; HAMAP: Arginine-tRNA-protein transferase, predicted, prokaryotic; PFAM: Arginine-tRNA-protein transferase, C-terminal; Arginine-tRNA-protein transferase, N-terminal; arginyl-tRNA--protein transferase complement(41048..41755) Nitrosomonas sp. AL212 10296705 YP_004293324.1 CDS NAL212_0205 NC_015222.1 41765 42466 R TIGRFAM: Leucyl/phenylalanyl-tRNA-protein transferase; KEGG: nmu:Nmul_A2709 leucyl/phenylalanyl-tRNA--protein transferase; PFAM: Leucyl/phenylalanyl-tRNA-protein transferase; leucyl/phenylalanyl-tRNA/protein transferase complement(41765..42466) Nitrosomonas sp. AL212 10296706 YP_004293325.1 CDS NAL212_0206 NC_015222.1 42599 43516 D KEGG: neu:NE2218 hypothetical protein; hypothetical protein 42599..43516 Nitrosomonas sp. AL212 10296707 YP_004293326.1 CDS NAL212_0207 NC_015222.1 43744 45567 R TIGRFAM: Allophanate hydrolase; KEGG: nmu:Nmul_A0944 allophanate hydrolase; PFAM: Amidase; allophanate hydrolase complement(43744..45567) Nitrosomonas sp. AL212 10296708 YP_004293327.1 CDS NAL212_0208 NC_015222.1 45564 49187 R SMART: Allophanate hydrolase subunit 2; Biotin carboxylase, C-terminal; Allophanate hydrolase subunit 1; TIGRFAM: Urea carboxylase; Allophanate hydrolase subunit 2; KEGG: nmu:Nmul_A0943 allophanate hydrolase subunit 2; PFAM: Allophanate hydrolase subunit 2; Biotin carboxylase, C-terminal; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin/lipoyl attachment; Allophanate hydrolase subunit 1; Carbamoyl-phosphate synthetase, large subunit, ATP-binding; urea carboxylase complement(45564..49187) Nitrosomonas sp. AL212 10296709 YP_004293328.1 CDS NAL212_0209 NC_015222.1 49192 49851 R KEGG: net:Neut_2474 hypothetical protein; TIGRFAM: Urea carboxylase-associated protein 1; PFAM: Domain of unknown function DUF1989; urea carboxylase-associated protein 1 complement(49192..49851) Nitrosomonas sp. AL212 10296710 YP_004293329.1 CDS NAL212_0210 NC_015222.1 49848 50573 R KEGG: nmu:Nmul_A0941 hypothetical protein; TIGRFAM: Urea carboxylase-associated protein 2; PFAM: Domain of unknown function DUF1989; urea carboxylase-associated protein 2 complement(49848..50573) Nitrosomonas sp. AL212 10296711 YP_004293330.1 CDS NAL212_0211 NC_015222.1 50570 52003 R PFAM: Amino acid permease domain; KEGG: nmu:Nmul_A0940 amino acid permease-associated region; amino acid permease-associated protein complement(50570..52003) Nitrosomonas sp. AL212 10296712 YP_004293331.1 CDS NAL212_0212 NC_015222.1 52355 52990 R PFAM: Exopolysaccharide synthesis, ExoD; KEGG: neu:NE0797 hypothetical protein; exopolysaccharide synthesis exoD complement(52355..52990) Nitrosomonas sp. AL212 10296713 YP_004293332.1 CDS NAL212_0213 NC_015222.1 53575 55512 R KEGG: npu:Npun_R5402 FG-GAP repeat-containing protein; PFAM: FG-GAP; SMART: Integrin alpha beta-propellor; FG-GAP repeat-containing protein complement(53575..55512) Nitrosomonas sp. AL212 10296714 YP_004293333.1 CDS NAL212_0214 NC_015222.1 55917 56393 D KEGG: cwo:Cwoe_3047 hypothetical protein; hypothetical protein 55917..56393 Nitrosomonas sp. AL212 10296715 YP_004293334.1 CDS NAL212_0215 NC_015222.1 56403 56870 D TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; KEGG: hse:Hsero_1607 transcription regulator protein; SMART: HTH transcriptional regulator, MerR; MerR family transcriptional regulator 56403..56870 Nitrosomonas sp. AL212 10296716 YP_004293335.1 CDS NAL212_0216 NC_015222.1 56917 58515 D KEGG: fbc:FB2170_15773 TPR repeat protein; hypothetical protein 56917..58515 Nitrosomonas sp. AL212 10296717 YP_004293336.1 CDS NAL212_0217 NC_015222.1 58617 58958 D KEGG: dmo:Dmoj_GI23312 GI23312 gene product from transcript GI23312-RA; hypothetical protein 58617..58958 Nitrosomonas sp. AL212 10296718 YP_004293337.1 CDS NAL212_0218 NC_015222.1 59183 60514 D PFAM: Outer membrane efflux protein; KEGG: nmu:Nmul_A1408 outer membrane efflux protein; outer membrane efflux protein 59183..60514 Nitrosomonas sp. AL212 10296719 YP_004293338.1 CDS NAL212_0219 NC_015222.1 60534 62108 D KEGG: nmu:Nmul_A1407 secretion protein HlyD; TIGRFAM: Secretion protein HlyD; PFAM: Copper binding periplasmic protein CusF; RND family efflux transporter MFP subunit 60534..62108 Nitrosomonas sp. AL212 10296720 YP_004293339.1 CDS NAL212_0220 NC_015222.1 62120 65242 D KEGG: nmu:Nmul_A1406 heavy metal efflux pump CzcA; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein; CzcA family heavy metal efflux pump 62120..65242 Nitrosomonas sp. AL212 10296721 YP_004293340.1 CDS NAL212_0221 NC_015222.1 65947 68487 D PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; Kelch repeat type 1; Cell surface receptor IPT/TIG; KEGG: svo:SVI_3719 serine protease, subtilase family; SMART: Kelch repeat type 1; subtilisin 65947..68487 Nitrosomonas sp. AL212 10296722 YP_004293341.1 CDS NAL212_0222 NC_015222.1 68545 69399 R KEGG: nmu:Nmul_A0139 hypothetical protein; hypothetical protein complement(68545..69399) Nitrosomonas sp. AL212 10296723 YP_004293342.1 CDS NAL212_0223 NC_015222.1 69408 71135 R PFAM: Restriction endonuclease, type I, S subunit, EcoBI; KEGG: gca:Galf_2918 restriction modification system DNA specificity domain; restriction modification system DNA specificity domain complement(69408..71135) Nitrosomonas sp. AL212 10296724 YP_004293343.1 CDS NAL212_0224 NC_015222.1 71132 72331 R SMART: ATPase, AAA+ type, core; KEGG: geo:Geob_1221 ATPase; AAA ATPase complement(71132..72331) Nitrosomonas sp. AL212 10296725 YP_004293344.1 CDS NAL212_0225 NC_015222.1 72444 73913 R manually curated; KEGG: gca:Galf_2917 site-specific DNA-methyltransferase (adenine-specific); PFAM: DNA methylase, adenine-specific; adenine-specific DNA-methyltransferase complement(72444..73913) Nitrosomonas sp. AL212 10296726 YP_004293345.1 CDS NAL212_0226 NC_015222.1 73942 76305 R PFAM: Restriction endonuclease, type I, EcoEI, R subunit/Type III, Res subunit, C-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; KEGG: gca:Galf_0381 type I site-specific deoxyribonuclease; SMART: DEAD-like helicase, N-terminal; Type I site-specific deoxyribonuclease complement(73942..76305) Nitrosomonas sp. AL212 10296727 YP_004293346.1 CDS NAL212_0227 NC_015222.1 76684 77334 D PFAM: Methyltransferase type 11; KEGG: aoe:Clos_1084 methyltransferase type 11; type 11 methyltransferase 76684..77334 Nitrosomonas sp. AL212 10296728 YP_004293347.1 CDS NAL212_0228 NC_015222.1 77382 77999 R KEGG: neu:NE0981 HhH-GPD; PFAM: HhH-GPD domain; SMART: HhH-GPD domain; Helix-hairpin-helix DNA-binding motif, class 1; HhH-GPD family protein complement(77382..77999) Nitrosomonas sp. AL212 10296729 YP_004293348.1 CDS NAL212_0229 NC_015222.1 78311 78757 D KEGG: nmu:Nmul_A2503 cell division protein MraZ; TIGRFAM: MraZ; PFAM: MraZ domain; MraZ protein 78311..78757 Nitrosomonas sp. AL212 10296730 YP_004293349.1 CDS NAL212_0230 NC_015222.1 78776 79702 D KEGG: nmu:Nmul_A2502 S-adenosyl-methyltransferase MraW; TIGRFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; PFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; S-adenosyl-methyltransferase MraW 78776..79702 Nitrosomonas sp. AL212 10296731 YP_004293350.1 CDS NAL212_0231 NC_015222.1 79726 80028 D KEGG: mfa:Mfla_2276 cell division protein, FtsL -like protein; TIGRFAM: Cell division protein, FtsL -like; PFAM: Cell division protein FtsL; cell division protein FtsL 79726..80028 Nitrosomonas sp. AL212 10296732 YP_004293351.1 CDS NAL212_0232 NC_015222.1 80025 81752 D KEGG: nmu:Nmul_A2500 peptidoglycan glycosyltransferase; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; peptidoglycan glycosyltransferase 80025..81752 Nitrosomonas sp. AL212 10296733 YP_004293352.1 CDS NAL212_0233 NC_015222.1 81758 83284 D TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; KEGG: neu:NE0986 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; UDP-N-acetylmuramyl tripeptide synthetase 81758..83284 Nitrosomonas sp. AL212 10296734 YP_004293353.1 CDS NAL212_0234 NC_015222.1 83281 84681 D TIGRFAM: UDP-MurNAc-pentapeptide synthetase; KEGG: nmu:Nmul_A2498 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase 83281..84681 Nitrosomonas sp. AL212 10296735 YP_004293354.1 CDS NAL212_0235 NC_015222.1 84672 85757 D KEGG: nmu:Nmul_A2497 phospho-N-acetylmuramoyl-pentapeptide-transferase; TIGRFAM: Phospho-N-acetylmuramoyl-pentapeptide transferase; PFAM: Glycosyl transferase, family 4; phospho-N-acetylmuramoyl-pentapeptide- transferase 84672..85757 Nitrosomonas sp. AL212 10296736 YP_004293355.1 CDS NAL212_0236 NC_015222.1 85754 87169 D KEGG: neu:NE0989 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; TIGRFAM: UDP-N-acetylmuramoylalanine-D-glutamate ligase; PFAM: Mur ligase, central; Mur ligase, C-terminal; UDP-N-acetylmuramoylalanine--D-glutamate ligase 85754..87169 Nitrosomonas sp. AL212 10296737 YP_004293356.1 CDS NAL212_0237 NC_015222.1 87176 88336 D KEGG: nmu:Nmul_A2495 cell cycle protein; TIGRFAM: Cell division protein FtsW; PFAM: Cell cycle protein; cell division protein FtsW 87176..88336 Nitrosomonas sp. AL212 10296738 YP_004293357.1 CDS NAL212_0238 NC_015222.1 88333 89424 D TIGRFAM: N-acetylglucosaminyltransferase, MurG; KEGG: nmu:Nmul_A2494 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; PFAM: Glycosyl transferase, family 28, C-terminal; Glycosyl transferase, family 28; UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase 88333..89424 Nitrosomonas sp. AL212 10296739 YP_004293358.1 CDS NAL212_0239 NC_015222.1 89414 90841 D TIGRFAM: UDP-N-acetylmuramate-alanine ligase; KEGG: nmu:Nmul_A2493 UDP-N-acetylmuramate--L-alanine ligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; UDP-N-acetylmuramate--L-alanine ligase 89414..90841 Nitrosomonas sp. AL212 10296740 YP_004293359.1 CDS NAL212_0240 NC_015222.1 90855 91844 D TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; KEGG: neu:NE0993 UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal; FAD linked oxidase, N-terminal; UDP-N-acetylenolpyruvoylglucosamine reductase 90855..91844 Nitrosomonas sp. AL212 10296741 YP_004293360.1 CDS NAL212_0241 NC_015222.1 91844 92761 D PFAM: D-alanine--D-alanine ligase, C-terminal; D-alanine--D-alanine ligase, N-terminal; TIGRFAM: D-alanine--D-alanine ligase; HAMAP: D-alanine--D-alanine ligase; KEGG: nmu:Nmul_A2491 D-alanine--D-alanine ligase; D-alanine--D-alanine ligase 91844..92761 Nitrosomonas sp. AL212 10296742 YP_004293361.1 CDS NAL212_0242 NC_015222.1 92751 93527 D PFAM: Cell division protein FtsQ; Polypeptide-transport-associated, FtsQ-type; KEGG: net:Neut_0242 polypeptide-transport-associated domain-containing protein; cell division protein FtsQ 92751..93527 Nitrosomonas sp. AL212 10296743 YP_004293362.1 CDS NAL212_0243 NC_015222.1 93540 94778 D TIGRFAM: Cell division protein family FtsA; PFAM: Cell division protein FtsA domain; KEGG: neu:NE0996 cell division protein FtsA; SMART: Cell division protein FtsA domain; cell division protein FtsA 93540..94778 Nitrosomonas sp. AL212 10296744 YP_004293363.1 CDS NAL212_0244 NC_015222.1 94847 96004 D TIGRFAM: Cell division protein FtsZ, N-terminal; PFAM: Tubulin/FtsZ, GTPase domain; KEGG: net:Neut_0240 cell division protein FtsZ; SMART: Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain; cell division protein FtsZ 94847..96004 Nitrosomonas sp. AL212 10296745 YP_004293364.1 CDS NAL212_0245 NC_015222.1 96237 97958 R TIGRFAM: PAS; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; PAS fold-3; KEGG: mfa:Mfla_1933 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; SMART: Chemotaxis methyl-accepting receptor, signalling; PAS; PAC motif; HAMP linker domain; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor complement(96237..97958) Nitrosomonas sp. AL212 10296746 YP_004293365.1 CDS NAL212_0246 NC_015222.1 98244 99551 R PFAM: Transposase, IS4-like; KEGG: dde:Dde_2849 ISPg7, transposase; transposase IS4 family protein complement(98244..99551) Nitrosomonas sp. AL212 10296747 YP_004293366.1 CDS NAL212_0248 NC_015222.1 100447 105084 R KEGG: rpd:RPD_0591 DNA helicase, putative; UvrD type DNA helicase complement(100447..105084) Nitrosomonas sp. AL212 10296749 YP_004293367.1 CDS NAL212_0249 NC_015222.1 105603 108641 R PFAM: DNA-directed DNA polymerase, family B, mitochondria/virus; KEGG: mma:MM_3253 hypothetical protein; DNA polymerase type B complement(105603..108641) Nitrosomonas sp. AL212 10296750 YP_004293368.1 CDS NAL212_0250 NC_015222.1 108656 109549 R KEGG: ppr:PBPRB1378 hypothetical protein; hypothetical protein complement(108656..109549) Nitrosomonas sp. AL212 10296751 YP_004293369.1 CDS NAL212_0251 NC_015222.1 109637 110122 R KEGG: abi:Aboo_0388 hypothetical protein; hypothetical protein complement(109637..110122) Nitrosomonas sp. AL212 10296752 YP_004293370.1 CDS NAL212_0252 NC_015222.1 110115 110762 R KEGG: abi:Aboo_0389 hypothetical protein; hypothetical protein complement(110115..110762) Nitrosomonas sp. AL212 10296753 YP_004293371.1 CDS NAL212_0253 NC_015222.1 110985 111890 D KEGG: bll:BLJ_2035 hypothetical protein; hypothetical protein 110985..111890 Nitrosomonas sp. AL212 10296754 YP_004293372.1 CDS NAL212_0254 NC_015222.1 111883 113175 D KEGG: mmh:Mmah_1312 CRISPR-associated protein, Cas1 family; TIGRFAM: CRISPR-associated protein Cas1; PFAM: CRISPR-associated protein Cas1; CRISPR-associated protein Cas1 111883..113175 Nitrosomonas sp. AL212 10296755 YP_004293373.1 CDS NAL212_0255 NC_015222.1 113221 114018 R KEGG: bce:BC1266 integral membrane protein; hypothetical protein complement(113221..114018) Nitrosomonas sp. AL212 10296756 YP_004293374.1 CDS NAL212_0256 NC_015222.1 114357 114653 D KEGG: dat:HRM2_44620 hypothetical protein; hypothetical protein 114357..114653 Nitrosomonas sp. AL212 10296757 YP_004293375.1 CDS NAL212_0257 NC_015222.1 114641 114991 D KEGG: eba:ebB55 transposase, fragment; manually curated; PFAM: Transposase (putative), IS66 Orf2-like; IS66 Orf2 family protein 114641..114991 Nitrosomonas sp. AL212 10296758 YP_004293376.1 CDS NAL212_0258 NC_015222.1 115045 116628 D PFAM: Transposase, IS66; KEGG: gca:Galf_2413 transposase; transposase IS66 115045..116628 Nitrosomonas sp. AL212 10296759 YP_004293377.1 CDS NAL212_0259 NC_015222.1 116765 117769 R TIGRFAM: DNA polymerase III, delta subunit; KEGG: nmu:Nmul_A0513 DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; DNA polymerase III subunit delta complement(116765..117769) Nitrosomonas sp. AL212 10296760 YP_004293378.1 CDS NAL212_0260 NC_015222.1 117803 118321 R PFAM: Lipopolysccharide assembly, LptE; KEGG: nmu:Nmul_A0512 rare lipoprotein B; Rare lipoprotein B complement(117803..118321) Nitrosomonas sp. AL212 10296761 YP_004293379.1 CDS NAL212_0261 NC_015222.1 118342 120987 R TIGRFAM: Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial; KEGG: nmu:Nmul_A0511 leucyl-tRNA synthetase; leucyl-tRNA synthetase complement(118342..120987) Nitrosomonas sp. AL212 10296762 YP_004293380.1 CDS NAL212_0262 NC_015222.1 121217 121423 R PFAM: Dodecin flavoprotein; KEGG: mca:MCA3058 hypothetical protein; hypothetical protein complement(121217..121423) Nitrosomonas sp. AL212 10296763 YP_004293381.1 CDS NAL212_0263 NC_015222.1 121601 122386 D PFAM: Peptidase M48; KEGG: neu:NE1475 hypothetical protein; peptidase M48 Ste24p 121601..122386 Nitrosomonas sp. AL212 10296764 YP_004293382.1 CDS NAL212_0264 NC_015222.1 122391 122777 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bxe:Bxe_C0588 putative dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(122391..122777) Nitrosomonas sp. AL212 10296765 YP_004293383.1 CDS NAL212_0265 NC_015222.1 123080 123571 D KEGG: net:Neut_1168 CheW protein; PFAM: CheW-like protein; SMART: CheW-like protein; CheW protein 123080..123571 Nitrosomonas sp. AL212 10296766 YP_004293384.1 CDS NAL212_0266 NC_015222.1 123636 125354 D KEGG: tbd:Tbd_1622 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; methyl-accepting chemotaxis sensory transducer 123636..125354 Nitrosomonas sp. AL212 10296767 YP_004293385.1 CDS NAL212_0267 NC_015222.1 125818 126786 R KEGG: net:Neut_1587 rare lipoprotein A; TIGRFAM: Rare lipoprotein A, bacterial; PFAM: Barwin-related endoglucanase; Sporulation-related domain; rare lipoprotein A complement(125818..126786) Nitrosomonas sp. AL212 10296768 YP_004293386.1 CDS NAL212_0268 NC_015222.1 126783 127883 R KEGG: neu:NE2066 cell cycle proteins; TIGRFAM: Rod shape-determining protein RodA; PFAM: Cell cycle protein; rod shape-determining protein RodA complement(126783..127883) Nitrosomonas sp. AL212 10296769 YP_004293387.1 CDS NAL212_0269 NC_015222.1 127935 129848 R TIGRFAM: Penicillin-binding protein 2; KEGG: nmu:Nmul_A0317 peptidoglycan glycosyltransferase; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; penicillin-binding protein 2 complement(127935..129848) Nitrosomonas sp. AL212 10296770 YP_004293388.1 CDS NAL212_0270 NC_015222.1 129845 130420 R KEGG: nmu:Nmul_A0318 rod shape-determining protein MreD; TIGRFAM: Cell shape-determining protein MreD; PFAM: Cell shape-determining protein MreD; rod shape-determining protein MreD complement(129845..130420) Nitrosomonas sp. AL212 10296771 YP_004293389.1 CDS NAL212_0271 NC_015222.1 130377 131267 R KEGG: neu:NE2069 rod shape-determining protein MreC; TIGRFAM: Rod shape-determining protein MreC, subtype; PFAM: Rod shape-determining protein MreC; rod shape-determining protein MreC complement(130377..131267) Nitrosomonas sp. AL212 10296772 YP_004293390.1 CDS NAL212_0272 NC_015222.1 131346 132404 R KEGG: nmu:Nmul_A0320 rod shape-determining protein MreB; TIGRFAM: Cell shape determining protein MreB/Mrl; PFAM: Cell shape determining protein MreB/Mrl; MreB/Mrl family cell shape determining protein complement(131346..132404) Nitrosomonas sp. AL212 10296773 YP_004293391.1 CDS NAL212_0273 NC_015222.1 132535 132822 D KEGG: nmu:Nmul_A0321 aspartyl/glutamyl-tRNA amidotransferase subunit C; TIGRFAM: Glu-tRNAGln amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase, C subunit; glutamyl-tRNA(Gln) amidotransferase subunit C 132535..132822 Nitrosomonas sp. AL212 10296774 YP_004293392.1 CDS NAL212_0274 NC_015222.1 132914 134362 D TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase A subunit; KEGG: nmu:Nmul_A0322 aspartyl/glutamyl-tRNA amidotransferase subunit A; PFAM: Amidase; glutamyl-tRNA(Gln) amidotransferase subunit A 132914..134362 Nitrosomonas sp. AL212 10296775 YP_004293393.1 CDS NAL212_0275 NC_015222.1 134408 135847 D TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, N-terminal; Asn/Gln amidotransferase; KEGG: neu:NE2073 aspartyl/glutamyl-tRNA amidotransferase subunit B; SMART: Asn/Gln amidotransferase; glutamyl-tRNA(Gln) amidotransferase subunit B 134408..135847 Nitrosomonas sp. AL212 10296776 YP_004293394.1 CDS NAL212_0276 NC_015222.1 135913 136284 R KEGG: nwa:Nwat_1721 putative thiol-disulfide oxidoreductase DCC; manually curated; PFAM: Putative thiol-disulphide oxidoreductase DCC; thiol-disulfide oxidoreductase DCC complement(135913..136284) Nitrosomonas sp. AL212 10296777 YP_004293395.1 CDS NAL212_0277 NC_015222.1 136217 136507 R KEGG: tcr:509791.80 hypothetical protein; hypothetical protein complement(136217..136507) Nitrosomonas sp. AL212 10296778 YP_004293396.1 CDS NAL212_0278 NC_015222.1 136748 145408 D PFAM: Protein of unknown function DUF2329; Glycosyltransferase 36 associated; Glycosyltransferase 36; Putative carbohydrate binding; KEGG: tbd:Tbd_1304 cyclic beta 1-2 glucan synthetase; hypothetical protein 136748..145408 Nitrosomonas sp. AL212 10296779 YP_004293397.1 CDS NAL212_0279 NC_015222.1 145555 148290 R PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 2; KEGG: neu:NE0564 multicopper oxidase type 1; multicopper oxidase type 3 complement(145555..148290) Nitrosomonas sp. AL212 10296780 YP_004293398.1 CDS NAL212_0280 NC_015222.1 148341 149345 R PFAM: Multicopper oxidase, type 3; KEGG: neu:NE0565 hypothetical protein; multicopper oxidase type 3 complement(148341..149345) Nitrosomonas sp. AL212 10296781 YP_004293399.1 CDS NAL212_0281 NC_015222.1 149569 150294 R KEGG: sus:Acid_1755 two component LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; two component transcriptional regulator, LuxR family complement(149569..150294) Nitrosomonas sp. AL212 10296782 YP_004293400.1 CDS NAL212_0282 NC_015222.1 150747 151577 D KEGG: net:Neut_0407 inositol-phosphate phosphatase; PFAM: Inositol monophosphatase; inositol-phosphate phosphatase 150747..151577 Nitrosomonas sp. AL212 10296783 YP_004293401.1 CDS NAL212_0283 NC_015222.1 151730 153019 D PFAM: Sodium:dicarboxylate symporter; KEGG: hna:Hneap_1097 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 151730..153019 Nitrosomonas sp. AL212 10296784 YP_004293402.1 CDS NAL212_0284 NC_015222.1 153075 153275 R PFAM: Protein of unknown function DUF466; KEGG: neu:NE2409 hypothetical protein; hypothetical protein complement(153075..153275) Nitrosomonas sp. AL212 10296785 YP_004293403.1 CDS NAL212_0285 NC_015222.1 153294 155366 R PFAM: Carbon starvation protein CstA; KEGG: neu:NE2410 carbon starvation protein CstA; carbon starvation protein CstA complement(153294..155366) Nitrosomonas sp. AL212 10296786 YP_004293404.1 CDS NAL212_0286 NC_015222.1 155420 156046 R KEGG: nmu:Nmul_A2319 putative transcriptional regulator; TIGRFAM: Chromosome segregation/condensation protein ScpB, prokaryote; PFAM: Chromosome segregation/condensation protein ScpB, prokaryote; chromosome segregation and condensation protein ScpB complement(155420..156046) Nitrosomonas sp. AL212 10296787 YP_004293405.1 CDS NAL212_0287 NC_015222.1 156012 156827 R PFAM: Prokaryotic chromosome segregation/condensation protein ScpA; KEGG: nmu:Nmul_A2318 chromosome segregation and condensation protein ScpA; chromosome segregation and condensation protein ScpA complement(156012..156827) Nitrosomonas sp. AL212 10296788 YP_004293406.1 CDS NAL212_0288 NC_015222.1 156865 158067 R TIGRFAM: Tryptophanyl-tRNA synthetase, class Ib; KEGG: nmu:Nmul_A2317 tryptophanyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib; tryptophanyl-tRNA synthetase complement(156865..158067) Nitrosomonas sp. AL212 10296789 YP_004293407.1 CDS NAL212_0289 NC_015222.1 158094 158759 R PFAM: Peptidase M50; KEGG: net:Neut_2041 peptidase M50; peptidase M50 complement(158094..158759) Nitrosomonas sp. AL212 10296790 YP_004293408.1 CDS NAL212_0290 NC_015222.1 158752 159384 R KEGG: neu:NE1725 SUA5/YciO/YrdC/YwlC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC; PFAM: Sua5/YciO/YrdC, N-terminal; Sua5/YciO/YrdC/YwlC family protein complement(158752..159384) Nitrosomonas sp. AL212 10296791 YP_004293409.1 CDS NAL212_0291 NC_015222.1 159408 160280 R KEGG: net:Neut_2039 phosphotransferase domain-containing protein; PFAM: PHP, C-terminal; SMART: Polymerase/histidinol phosphatase, N-terminal; PHP domain-containing protein complement(159408..160280) Nitrosomonas sp. AL212 10296792 YP_004293410.1 CDS NAL212_0292 NC_015222.1 160310 160411 D hypothetical protein 160310..160411 Nitrosomonas sp. AL212 10296793 YP_004293411.1 CDS NAL212_0293 NC_015222.1 160408 161631 D PFAM: NnrS; KEGG: neu:NE1723 hypothetical protein; NnrS family protein 160408..161631 Nitrosomonas sp. AL212 10296794 YP_004293412.1 CDS NAL212_0294 NC_015222.1 161819 162232 D KEGG: dpe:Dper_GL15607 GL15607 gene product from transcript GL15607-RA; hypothetical protein 161819..162232 Nitrosomonas sp. AL212 10296795 YP_004293413.1 CDS NAL212_0295 NC_015222.1 162341 162514 R hypothetical protein complement(162341..162514) Nitrosomonas sp. AL212 10296796 YP_004293414.1 CDS NAL212_0297 NC_015222.1 162731 163873 R PFAM: Acyltransferase 3; KEGG: bid:Bind_2849 acyltransferase 3; acyltransferase 3 complement(162731..163873) Nitrosomonas sp. AL212 10296798 YP_004293415.1 CDS NAL212_0298 NC_015222.1 163954 164490 R KEGG: hje:HacjB3_14735 histone deacetylase superfamily protein; hypothetical protein complement(163954..164490) Nitrosomonas sp. AL212 10296799 YP_004293416.1 CDS NAL212_0299 NC_015222.1 164899 166116 D KEGG: neu:NE0034 aminotransferase class-V; PFAM: Aminotransferase, class V/Cysteine desulfurase; serine--pyruvate transaminase 164899..166116 Nitrosomonas sp. AL212 10296800 YP_004293417.1 CDS NAL212_0300 NC_015222.1 166206 167219 D PFAM: Glycosyl transferase, family 4; KEGG: nmu:Nmul_A0632 glycosyl transferase family protein; glycosyl transferase family protein 166206..167219 Nitrosomonas sp. AL212 10296801 YP_004293418.1 CDS NAL212_0301 NC_015222.1 167225 169114 D PFAM: Polysaccharide biosynthesis protein CapD-like; KEGG: nmu:Nmul_A0631 polysaccharide biosynthesis protein CapD; polysaccharide biosynthesis protein CapD 167225..169114 Nitrosomonas sp. AL212 10296802 YP_004293419.1 CDS NAL212_0302 NC_015222.1 169143 170855 R KEGG: gca:Galf_0315 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter, transmembrane domain; ABC transporter-like; xenobiotic-transporting ATPase complement(169143..170855) Nitrosomonas sp. AL212 10296803 YP_004293420.1 CDS NAL212_0303 NC_015222.1 171006 171938 D TIGRFAM: Glucose-1-phosphate thymidylyltransferase, long form; KEGG: pol:Bpro_4018 glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; glucose-1-phosphate thymidylyltransferase 171006..171938 Nitrosomonas sp. AL212 10296804 YP_004293421.1 CDS NAL212_0304 NC_015222.1 171955 172500 D TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase-related; KEGG: net:Neut_2244 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase-related; dTDP-4-dehydrorhamnose 3,5-epimerase 171955..172500 Nitrosomonas sp. AL212 10296805 YP_004293422.1 CDS NAL212_0305 NC_015222.1 172553 173902 D TIGRFAM: DNA repair protein RadA; PFAM: Circadian clock protein KaiC/DNA repair protein RadA; Peptidase S16, Lon C-terminal; KEGG: nmu:Nmul_A1803 DNA repair protein RadA; SMART: ATPase, AAA+ type, core; DNA repair protein RadA 172553..173902 Nitrosomonas sp. AL212 10296806 YP_004293423.1 CDS NAL212_0306 NC_015222.1 173986 174789 D PFAM: Ceramidase; KEGG: nmu:Nmul_A1801 hypothetical protein; alkaline phytoceramidase 173986..174789 Nitrosomonas sp. AL212 10296807 YP_004293424.1 CDS NAL212_0307 NC_015222.1 175246 177069 D KEGG: nmu:Nmul_A0231 acyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase; long-chain fatty acid--ACP ligase 175246..177069 Nitrosomonas sp. AL212 10296808 YP_004293425.1 CDS NAL212_0308 NC_015222.1 177075 177989 D PFAM: NAD-dependent epimerase/dehydratase; KEGG: nmu:Nmul_A0230 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 177075..177989 Nitrosomonas sp. AL212 10296809 YP_004293426.1 CDS NAL212_0309 NC_015222.1 178019 178276 D PFAM: Phosphopantetheine-binding; KEGG: neu:NE1656 phosphopantetheine attachment site; phosphopantetheine-binding protein 178019..178276 Nitrosomonas sp. AL212 10296810 YP_004293427.1 CDS NAL212_0310 NC_015222.1 178276 179469 D KEGG: neu:NE1655 aminotransferase class-I; PFAM: Aminotransferase, class I/classII; 8-amino-7-oxononanoate synthase 178276..179469 Nitrosomonas sp. AL212 10296811 YP_004293428.1 CDS NAL212_0311 NC_015222.1 179492 180247 D KEGG: sme:SMc01711 hypothetical protein; hypothetical protein 179492..180247 Nitrosomonas sp. AL212 10296812 YP_004293429.1 CDS NAL212_0312 NC_015222.1 180388 181722 R KEGG: chu:CHU_2279 PhoH-related protein; PFAM: PhoH-like protein; SMART: Nucleotide binding protein, PINc; phoH family protein complement(180388..181722) Nitrosomonas sp. AL212 10296813 YP_004293430.1 CDS NAL212_0314 NC_015222.1 182215 183369 R PFAM: Integrase, catalytic core; KEGG: bac:BamMC406_6587 integrase catalytic region; integrase catalytic region complement(182215..183369) Nitrosomonas sp. AL212 10296815 YP_004293431.1 CDS NAL212_0315 NC_015222.1 184120 184440 D PFAM: Transposase IS3/IS911family; KEGG: alv:Alvin_1732 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 184120..184440 Nitrosomonas sp. AL212 10296816 YP_004293432.1 CDS NAL212_0316 NC_015222.1 184440 185339 D PFAM: Integrase, catalytic core; KEGG: pde:Pden_3846 integrase catalytic subunit; integrase catalytic region 184440..185339 Nitrosomonas sp. AL212 10296817 YP_004293433.1 CDS NAL212_0317 NC_015222.1 185452 186537 D PFAM: Transposase, IS116/IS110/IS902; KEGG: ecp:ECP_4551 putative transposase; transposase IS116/IS110/IS902 family protein 185452..186537 Nitrosomonas sp. AL212 10296818 YP_004293434.1 CDS NAL212_0318 NC_015222.1 186756 189059 R KEGG: mms:mma_2809 transposase IstA; PFAM: IstB-like ATP-binding protein; Integrase, catalytic core; SMART: ATPase, AAA+ type, core; IstB domain-containing protein ATP-binding protein complement(186756..189059) Nitrosomonas sp. AL212 10296819 YP_004293435.1 CDS NAL212_0319 NC_015222.1 189245 189439 R KEGG: pmm:PMM1245 hypothetical protein; hypothetical protein complement(189245..189439) Nitrosomonas sp. AL212 10296820 YP_004293436.1 CDS NAL212_0321 NC_015222.1 190694 191968 D KEGG: bfo:BRAFLDRAFT_118313 hypothetical protein; hypothetical protein 190694..191968 Nitrosomonas sp. AL212 10296822 YP_004293437.1 CDS NAL212_0322 NC_015222.1 192080 192871 D KEGG: par:Psyc_1264 hypothetical protein; hypothetical protein 192080..192871 Nitrosomonas sp. AL212 10296823 YP_004293438.1 CDS NAL212_0323 NC_015222.1 193227 195179 R KEGG: rlg:Rleg_0196 hypothetical protein; hypothetical protein complement(193227..195179) Nitrosomonas sp. AL212 10296824 YP_004293439.1 CDS NAL212_0324 NC_015222.1 195560 196465 D KEGG: meh:M301_2200 hypothetical protein; hypothetical protein 195560..196465 Nitrosomonas sp. AL212 10296825 YP_004293440.1 CDS NAL212_0325 NC_015222.1 196582 197964 D PFAM: Replication initiation factor; KEGG: dar:Daro_1039 hypothetical protein; replication initiation factor 196582..197964 Nitrosomonas sp. AL212 10296826 YP_004293441.1 CDS NAL212_0327 NC_015222.1 198167 199180 D PFAM: Integrase, catalytic core, phage; KEGG: afr:AFE_0995 site-specific recombinase, phage integrase family; integrase family protein 198167..199180 Nitrosomonas sp. AL212 10296828 YP_004293442.1 CDS NAL212_0328 NC_015222.1 199477 199848 D KEGG: neu:NE0270 hypothetical protein; hypothetical protein 199477..199848 Nitrosomonas sp. AL212 10296829 YP_004293443.1 CDS NAL212_0329 NC_015222.1 199854 201152 D KEGG: mes:Meso_3789 relaxase/mobilization nuclease domain-containing protein; relaxase/mobilization nuclease domain-containing protein 199854..201152 Nitrosomonas sp. AL212 10296830 YP_004293444.1 CDS NAL212_0330 NC_015222.1 201190 201738 D KEGG: cci:CC1G_11100 ankyrin repeat protein; hypothetical protein 201190..201738 Nitrosomonas sp. AL212 10296831 YP_004293445.1 CDS NAL212_0331 NC_015222.1 201774 202517 R PFAM: Glutaredoxin; KEGG: dsh:Dshi_3931 glutaredoxin; glutaredoxin complement(201774..202517) Nitrosomonas sp. AL212 10296832 YP_004293446.1 CDS NAL212_0333 NC_015222.1 203179 203583 D PFAM: Uncharacterised protein family YphA; KEGG: neu:NE1276 hypothetical protein; DoxX family protein 203179..203583 Nitrosomonas sp. AL212 10296834 YP_004293447.1 CDS NAL212_0334 NC_015222.1 203849 204220 D KEGG: kcr:Kcr_0174 hypothetical protein; hypothetical protein 203849..204220 Nitrosomonas sp. AL212 10296835 YP_004293448.1 CDS NAL212_0335 NC_015222.1 204236 205018 D KEGG: zin:ZICARI_039 putative cytochrome bo terminal oxidase subunit I/cytochrome bo terminal oxidase subunit III fusion protein; hypothetical protein 204236..205018 Nitrosomonas sp. AL212 10296836 YP_004293449.1 CDS NAL212_0336 NC_015222.1 205387 206970 R PFAM: Transposase, IS66; KEGG: gca:Galf_2413 transposase; transposase IS66 complement(205387..206970) Nitrosomonas sp. AL212 10296837 YP_004293450.1 CDS NAL212_0337 NC_015222.1 207024 207374 R KEGG: eba:ebB55 transposase, fragment; manually curated; PFAM: Transposase (putative), IS66 Orf2-like; IS66 Orf2 family protein complement(207024..207374) Nitrosomonas sp. AL212 10296838 YP_004293451.1 CDS NAL212_0338 NC_015222.1 207362 207658 R KEGG: dat:HRM2_44620 hypothetical protein; hypothetical protein complement(207362..207658) Nitrosomonas sp. AL212 10296839 YP_004293452.1 CDS NAL212_0340 NC_015222.1 208137 209003 R KEGG: sto:ST2108 purine NTPase; hypothetical protein complement(208137..209003) Nitrosomonas sp. AL212 10296841 YP_004293453.1 CDS NAL212_0341 NC_015222.1 209070 209375 R KEGG: msv:Mesil_3324 hypothetical protein; hypothetical protein complement(209070..209375) Nitrosomonas sp. AL212 10296842 YP_004293454.1 CDS NAL212_0342 NC_015222.1 209621 210181 D KEGG: neu:NE0257 site-specific recombinase; PFAM: Resolvase, N-terminal; SMART: Resolvase, N-terminal; Resolvase domain 209621..210181 Nitrosomonas sp. AL212 10296843 YP_004293455.1 CDS NAL212_0343 NC_015222.1 210227 210733 R PFAM: Antirestriction; KEGG: hba:Hbal_0654 hypothetical protein; antirestriction ArdA family protein complement(210227..210733) Nitrosomonas sp. AL212 10296844 YP_004293456.1 CDS NAL212_0344 NC_015222.1 211086 211421 D KEGG: bur:Bcep18194_B2516 hypothetical protein; TIGRFAM: Addiction module killer protein, HI1419; PFAM: Protein of unknown function DUF891; addiction module killer protein 211086..211421 Nitrosomonas sp. AL212 10296845 YP_004293457.1 CDS NAL212_0345 NC_015222.1 211414 211743 D TIGRFAM: Addiction module antidote protein, HI1420; KEGG: rfe:RF_1316 transcriptional regulator; addiction module antidote protein 211414..211743 Nitrosomonas sp. AL212 10296846 YP_004293458.1 CDS NAL212_0346 NC_015222.1 211895 212155 D KEGG: neu:NE0262 hypothetical protein; TIGRFAM: Putative addiction module antidote protein, CC2985; PFAM: Uncharacterised protein family UPF0156/MetJ /Arc repressor; addiction module antidote protein 211895..212155 Nitrosomonas sp. AL212 10296847 YP_004293459.1 CDS NAL212_0347 NC_015222.1 212299 213606 D PFAM: Transposase, IS4-like; KEGG: dde:Dde_2849 ISPg7, transposase; transposase IS4 family protein 212299..213606 Nitrosomonas sp. AL212 10296848 YP_004293460.1 CDS NAL212_0349 NC_015222.1 214678 217335 D PFAM: PHP, C-terminal; KEGG: tin:Tint_3224 SMC domain protein; PHP domain-containing protein 214678..217335 Nitrosomonas sp. AL212 10296850 YP_004293461.1 CDS NAL212_0351 NC_015222.1 218508 219581 R PFAM: Transposase, IS4-like; Transposase InsH, N-terminal; KEGG: dia:Dtpsy_3344 transposase IS4 family protein; transposase IS4 family protein complement(218508..219581) Nitrosomonas sp. AL212 10296852 YP_004293462.1 CDS NAL212_0352 NC_015222.1 219692 220597 R KEGG: pyo:PY01937 hypothetical protein; hypothetical protein complement(219692..220597) Nitrosomonas sp. AL212 10296853 YP_004293463.1 CDS NAL212_0353 NC_015222.1 220750 222381 R PFAM: Ti-type conjugative transfer system, TraG-like; KEGG: neu:NE0246 TraG protein; TRAG family protein complement(220750..222381) Nitrosomonas sp. AL212 10296854 YP_004293464.1 CDS NAL212_0354 NC_015222.1 222386 223678 R KEGG: neu:NE0245 hypothetical protein; hypothetical protein complement(222386..223678) Nitrosomonas sp. AL212 10296855 YP_004293465.1 CDS NAL212_0355 NC_015222.1 223692 224708 R KEGG: neu:NE0243 hypothetical protein; hypothetical protein complement(223692..224708) Nitrosomonas sp. AL212 10296856 YP_004293466.1 CDS NAL212_0356 NC_015222.1 224882 225247 R KEGG: neu:NE0242 hypothetical protein; hypothetical protein complement(224882..225247) Nitrosomonas sp. AL212 10296857 YP_004293467.1 CDS NAL212_0357 NC_015222.1 225468 225734 D KEGG: tdn:Suden_1398 translocation protein TolB; hypothetical protein 225468..225734 Nitrosomonas sp. AL212 10296858 YP_004293468.1 CDS NAL212_0358 NC_015222.1 225854 229291 D KEGG: neu:NE0240 hypothetical protein; PFAM: Sel1-like; SMART: Sel1-like; Sel1 domain-containing protein repeat-containing protein 225854..229291 Nitrosomonas sp. AL212 10296859 YP_004293469.1 CDS NAL212_0359 NC_015222.1 229549 231132 R PFAM: Transposase, IS66; KEGG: gca:Galf_2413 transposase; transposase IS66 complement(229549..231132) Nitrosomonas sp. AL212 10296860 YP_004293470.1 CDS NAL212_0360 NC_015222.1 231186 231536 R KEGG: eba:ebB55 transposase, fragment; manually curated; PFAM: Transposase (putative), IS66 Orf2-like; IS66 Orf2 family protein complement(231186..231536) Nitrosomonas sp. AL212 10296861 YP_004293471.1 CDS NAL212_0361 NC_015222.1 231524 231820 R KEGG: dat:HRM2_44620 hypothetical protein; hypothetical protein complement(231524..231820) Nitrosomonas sp. AL212 10296862 YP_004293472.1 CDS NAL212_0362 NC_015222.1 231868 232149 D manually curated; KEGG: neu:NE0237 hypothetical protein; hypothetical protein 231868..232149 Nitrosomonas sp. AL212 10296863 YP_004293473.1 CDS NAL212_0363 NC_015222.1 232162 233715 D KEGG: neu:NE0236 site-specific recombinase; PFAM: Resolvase, N-terminal; SMART: Resolvase, N-terminal; Resolvase domain 232162..233715 Nitrosomonas sp. AL212 10296864 YP_004293474.1 CDS NAL212_0365 NC_015222.1 234768 235550 R KEGG: pst:PSPTO_B0039 transposase/IS protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; IstB domain-containing protein ATP-binding protein complement(234768..235550) Nitrosomonas sp. AL212 10296866 YP_004293475.1 CDS NAL212_0366 NC_015222.1 235547 236569 R PFAM: Integrase, catalytic core; Resolvase, helix-turn-helix domain; KEGG: pst:PSPTO_B0040 ISPsy4, transposase; integrase catalytic region complement(235547..236569) Nitrosomonas sp. AL212 10296867 YP_004293476.1 CDS NAL212_0367 NC_015222.1 237161 237427 D PFAM: Plasmid stabilisation system; KEGG: bgl:bglu_1g12000 hypothetical protein; plasmid stabilization system 237161..237427 Nitrosomonas sp. AL212 10296868 YP_004293477.1 CDS NAL212_0368 NC_015222.1 237424 237756 D KEGG: lpf:lpl1091 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; helix-turn-helix domain-containing protein 237424..237756 Nitrosomonas sp. AL212 10296869 YP_004293478.1 CDS NAL212_0369 NC_015222.1 237777 238067 R KEGG: mar:MAE_59610 CopG/DNA-binding domain-containing protein; hypothetical protein complement(237777..238067) Nitrosomonas sp. AL212 10296870 YP_004293479.1 CDS NAL212_0370 NC_015222.1 238036 238305 R PFAM: Protein of unknown function DUF497; KEGG: mar:MAE_25610 hypothetical protein; hypothetical protein complement(238036..238305) Nitrosomonas sp. AL212 10296871 YP_004293480.1 CDS NAL212_0371 NC_015222.1 238369 239088 D KEGG: tps:THAPSDRAFT_268596 hypothetical protein; hypothetical protein 238369..239088 Nitrosomonas sp. AL212 10296872 YP_004293481.1 CDS NAL212_0372 NC_015222.1 239270 239464 D KEGG: gbm:Gbem_3496 hypothetical protein; hypothetical protein 239270..239464 Nitrosomonas sp. AL212 10296873 YP_004293482.1 CDS NAL212_0373 NC_015222.1 239472 241160 D PFAM: Replication endonuclease, probable, phage; KEGG: mfa:Mfla_0975 bacteriophage replication gene A; replication protein A 239472..241160 Nitrosomonas sp. AL212 10296874 YP_004293483.1 CDS NAL212_0374 NC_015222.1 241534 241974 D KEGG: ctt:CtCNB1_2438 putative chemotaxis protein MotB; putative chemotaxis protein MotB 241534..241974 Nitrosomonas sp. AL212 10296875 YP_004293484.1 CDS NAL212_0375 NC_015222.1 242108 242386 D KEGG: hoh:Hoch_6105 hypothetical protein; hypothetical protein 242108..242386 Nitrosomonas sp. AL212 10296876 YP_004293485.1 CDS NAL212_0376 NC_015222.1 242505 243734 D PFAM: Transposase, mutator type; KEGG: xcv:XCVc0009 transposase mutator family protein; transposase mutator type 242505..243734 Nitrosomonas sp. AL212 10296877 YP_004293486.1 CDS NAL212_0377 NC_015222.1 243767 243862 D hypothetical protein 243767..243862 Nitrosomonas sp. AL212 10296878 YP_004293487.1 CDS NAL212_0378 NC_015222.1 243863 244279 D KEGG: shn:Shewana3_2956 hypothetical protein; hypothetical protein 243863..244279 Nitrosomonas sp. AL212 10296879 YP_004293488.1 CDS NAL212_0379 NC_015222.1 244430 244726 D KEGG: sli:Slin_4371 cell surface receptor IPT/TIG domain protein; hypothetical protein 244430..244726 Nitrosomonas sp. AL212 10296880 YP_004293489.1 CDS NAL212_0381 NC_015222.1 245442 245894 D TIGRFAM: Dehydroquinase, class II; KEGG: nmu:Nmul_A2754 3-dehydroquinate dehydratase; PFAM: Dehydroquinase, class II; 3-dehydroquinate dehydratase 245442..245894 Nitrosomonas sp. AL212 10296883 YP_004293490.1 CDS NAL212_0382 NC_015222.1 245960 246442 D KEGG: nmu:Nmul_A2753 acetyl-CoA carboxylase, biotin carboxyl carrier protein; TIGRFAM: Acetyl-CoA biotin carboxyl carrier; PFAM: Biotin/lipoyl attachment; acetyl-CoA carboxylase, biotin carboxyl carrier protein 245960..246442 Nitrosomonas sp. AL212 10296884 YP_004293491.1 CDS NAL212_0383 NC_015222.1 246468 247829 D SMART: Biotin carboxylase, C-terminal; TIGRFAM: Acetyl-CoA carboxylase, biotin carboxylase; KEGG: neu:NE0653 biotin carboxylase protein; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Biotin carboxylase, C-terminal; Carbamoyl-phosphate synthase, large subunit, N-terminal; acetyl-CoA carboxylase, biotin carboxylase 246468..247829 Nitrosomonas sp. AL212 10296885 YP_004293492.1 CDS NAL212_0384 NC_015222.1 247865 248782 D KEGG: nmu:Nmul_A2751 ribosomal protein L11 methyltransferase; TIGRFAM: Ribosomal protein L11 methyltransferase; PFAM: Ribosomal L11 methyltransferase, PrmA; 50S ribosomal protein L11 methyltransferase 247865..248782 Nitrosomonas sp. AL212 10296886 YP_004293493.1 CDS NAL212_0385 NC_015222.1 248872 249699 D KEGG: net:Neut_1897 zinc finger-domain-containing protein; TIGRFAM: Zinc finger/thioredoxin putative; PFAM: Protein of unknown function DUF3426; hypothetical protein 248872..249699 Nitrosomonas sp. AL212 10296887 YP_004293494.1 CDS NAL212_0386 NC_015222.1 250185 251957 R TIGRFAM: ATPase, anion-transporting; KEGG: psa:PST_0237 arsenical pump-driving ATPase; SMART: ATPase, AAA+ type, core; arsenite-activated ATPase ArsA complement(250185..251957) Nitrosomonas sp. AL212 10296888 YP_004293495.1 CDS NAL212_0387 NC_015222.1 251978 252328 R PFAM: Arsenical resistance operon trans-acting repressor ArsD; KEGG: psa:PST_0238 arsenic operon regulator; arsenical resistance operon trans-acting repressor arsD complement(251978..252328) Nitrosomonas sp. AL212 10296889 YP_004293496.1 CDS NAL212_0388 NC_015222.1 252427 253713 R KEGG: mfa:Mfla_1489 arsenical pump membrane protein; TIGRFAM: Arsenical pump membrane protein; PFAM: Arsenical pump membrane protein; arsenical pump membrane protein complement(252427..253713) Nitrosomonas sp. AL212 10296890 YP_004293497.1 CDS NAL212_0389 NC_015222.1 253743 254243 R KEGG: psa:PST_0240 arsenate reductase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; protein tyrosine phosphatase complement(253743..254243) Nitrosomonas sp. AL212 10296891 YP_004293498.1 CDS NAL212_0390 NC_015222.1 254245 254664 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mca:MCA2265 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase complement(254245..254664) Nitrosomonas sp. AL212 10296892 YP_004293499.1 CDS NAL212_0391 NC_015222.1 254704 255027 R KEGG: cvi:CV_2438 transcription regulator protein, arsenical resistance operon repressor; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; regulatory protein ArsR complement(254704..255027) Nitrosomonas sp. AL212 10296893 YP_004293500.1 CDS NAL212_0392 NC_015222.1 255309 257432 D PFAM: Protein of unknown function DUF839; KEGG: nmu:Nmul_A2572 hypothetical protein; hypothetical protein 255309..257432 Nitrosomonas sp. AL212 10296894 YP_004293501.1 CDS NAL212_0393 NC_015222.1 257547 258539 R PFAM: Diacylglycerol kinase, catalytic domain; KEGG: kfl:Kfla_0201 diacylglycerol kinase catalytic region; diacylglycerol kinase catalytic subunit complement(257547..258539) Nitrosomonas sp. AL212 10296895 YP_004293502.1 CDS NAL212_0394 NC_015222.1 258569 259612 R TIGRFAM: Conserved hypothetical protein CHP00661; KEGG: mca:MCA2984 hypothetical protein; hypothetical protein complement(258569..259612) Nitrosomonas sp. AL212 10296896 YP_004293503.1 CDS NAL212_0395 NC_015222.1 259813 260739 R PFAM: Patatin/Phospholipase A2-related; KEGG: svo:SVI_2442 patatin-like phospholipase family; patatin complement(259813..260739) Nitrosomonas sp. AL212 10296897 YP_004293504.1 CDS NAL212_0396 NC_015222.1 260746 261555 R PFAM: Metallo-dependent phosphatase; KEGG: azl:AZL_006380 metallophosphoesterase; metallophosphoesterase complement(260746..261555) Nitrosomonas sp. AL212 10296898 YP_004293505.1 CDS NAL212_0398 NC_015222.1 262790 263545 D PFAM: Alpha/beta hydrolase fold-1; KEGG: mpt:Mpe_A0052 hydrolase or acyltransferase-like protein; alpha/beta hydrolase fold protein 262790..263545 Nitrosomonas sp. AL212 10296900 YP_004293506.1 CDS NAL212_0399 NC_015222.1 263888 264451 D PFAM: Lipase, GDSL; KEGG: hau:Haur_2604 GDSL family lipase; G-D-S-L family lipolytic protein 263888..264451 Nitrosomonas sp. AL212 10296901 YP_004293507.1 CDS NAL212_0400 NC_015222.1 264448 265506 D TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: hau:Haur_2603 UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase 264448..265506 Nitrosomonas sp. AL212 10296902 YP_004293508.1 CDS NAL212_0401 NC_015222.1 265666 267510 R PFAM: Heparinase II/III-like; KEGG: nde:NIDE2386 hypothetical protein; heparinase II/III family protein complement(265666..267510) Nitrosomonas sp. AL212 10296903 YP_004293509.1 CDS NAL212_0402 NC_015222.1 267572 268762 R KEGG: scl:sce6682 hypothetical protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; Radical SAM domain-containing protein complement(267572..268762) Nitrosomonas sp. AL212 10296904 YP_004293510.1 CDS NAL212_0403 NC_015222.1 269000 269974 D KEGG: rca:Rcas_3215 oxidoreductase domain-containing protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase 269000..269974 Nitrosomonas sp. AL212 10296905 YP_004293511.1 CDS NAL212_0404 NC_015222.1 270120 271877 D KEGG: tcx:Tcr_2021 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 270120..271877 Nitrosomonas sp. AL212 10296906 YP_004293512.1 CDS NAL212_0405 NC_015222.1 272024 273022 R KEGG: nmu:Nmul_A0507 thiosulphate-binding protein; TIGRFAM: Thiosulphate-binding protein; PFAM: Bacterial extracellular solute-binding, family 1; sulfate ABC transporter periplasmic sulfate-binding protein complement(272024..273022) Nitrosomonas sp. AL212 10296907 YP_004293513.1 CDS NAL212_0406 NC_015222.1 273586 273711 R KEGG: nmu:Nmul_A1142 hypothetical protein; hypothetical protein complement(273586..273711) Nitrosomonas sp. AL212 10296908 YP_004293514.1 CDS NAL212_0407 NC_015222.1 273978 274874 R TIGRFAM: Ribosomal protein L3-specific, glutamine-N5-methyltransferase; Modification methylase HemK; KEGG: nmu:Nmul_A1854 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; PFAM: Methyltransferase small; protein-(glutamine-N5) methyltransferase, 50S ribosomal protein L3-specific complement(273978..274874) Nitrosomonas sp. AL212 10296909 YP_004293515.1 CDS NAL212_0408 NC_015222.1 275035 275493 D PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: nmu:Nmul_A1225 cytidine/deoxycytidylate deaminase, zinc-binding region; CMP/dCMP deaminase zinc-binding protein 275035..275493 Nitrosomonas sp. AL212 10296910 YP_004293516.1 CDS NAL212_0409 NC_015222.1 275483 275962 D PFAM: YkuD domain; KEGG: nmu:Nmul_A1226 ErfK/YbiS/YcfS/YnhG; ErfK/YbiS/YcfS/YnhG family protein 275483..275962 Nitrosomonas sp. AL212 10296911 YP_004293517.1 CDS NAL212_0410 NC_015222.1 276021 277682 D KEGG: neu:NE2076 LysM motif-containing protein; PFAM: FecR protein; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; FecR protein 276021..277682 Nitrosomonas sp. AL212 10296912 YP_004293518.1 CDS NAL212_0411 NC_015222.1 277679 280555 D TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; CHASE2; PAS fold; Diguanylate cyclase, predicted; KEGG: neu:NE2075 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS/PAC and Chase sensor-containing diguanylate cyclase/phosphodiesterase 277679..280555 Nitrosomonas sp. AL212 10296913 YP_004293519.1 CDS NAL212_0412 NC_015222.1 280732 282243 D KEGG: nmu:Nmul_A0437 threonine dehydratase; TIGRFAM: Threonine dehydratase I; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; Threonine dehydratase, C-terminal; threonine dehydratase, biosynthetic 280732..282243 Nitrosomonas sp. AL212 10296914 YP_004293520.1 CDS NAL212_0413 NC_015222.1 282555 284660 D KEGG: net:Neut_1161 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; SMART: Chemotaxis methyl-accepting receptor, signalling; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; methyl-accepting chemotaxis sensory transducer 282555..284660 Nitrosomonas sp. AL212 10296915 YP_004293521.1 CDS NAL212_0414 NC_015222.1 284701 289251 D KEGG: net:Neut_1162 CheA signal transduction histidine kinases; PFAM: Signal transduction response regulator, receiver domain; CheW-like protein; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; SMART: Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; ATPase-like, ATP-binding domain; CheW-like protein; CheA signal transduction histidine kinase 284701..289251 Nitrosomonas sp. AL212 10296916 YP_004293522.1 CDS NAL212_0415 NC_015222.1 289492 289770 R KEGG: cro:ROD_02701 hypothetical protein; hypothetical protein complement(289492..289770) Nitrosomonas sp. AL212 10296917 YP_004293523.1 CDS NAL212_0416 NC_015222.1 289915 290310 R TIGRFAM: Dihydroneopterin aldolase; PFAM: Dihydroneopterin aldolase; KEGG: nmu:Nmul_A2063 dihydroneopterin aldolase; SMART: Dihydroneopterin aldolase; dihydroneopterin aldolase complement(289915..290310) Nitrosomonas sp. AL212 10296918 YP_004293524.1 CDS NAL212_0417 NC_015222.1 290419 291033 D KEGG: nmu:Nmul_A2062 hypothetical protein; TIGRFAM: Glycerol-3-phosphate acyltransferase, bacteria; PFAM: Glycerol-3-phosphate acyltransferase, bacteria; hypothetical protein 290419..291033 Nitrosomonas sp. AL212 10296919 YP_004293525.1 CDS NAL212_0418 NC_015222.1 291177 292211 R TIGRFAM: Peptidase M22, glycoprotease, subgroup; Peptidase M22, O-sialoglycoprotein peptidase; KEGG: nmu:Nmul_A2061 putative DNA-binding/iron metalloprotein/AP endonuclease; PFAM: Peptidase M22, glycoprotease; glycoprotease family metalloendopeptidase complement(291177..292211) Nitrosomonas sp. AL212 10296920 YP_004293526.1 CDS NAL212_0419 NC_015222.1 292192 292338 R hypothetical protein complement(292192..292338) Nitrosomonas sp. AL212 10296921 YP_004293527.1 CDS NAL212_0420 NC_015222.1 292612 293568 D KEGG: neu:NE1809 beta subunit of citrate lyase; PFAM: Aldehyde-lyase domain; citryl-CoA lyase 292612..293568 Nitrosomonas sp. AL212 10296922 YP_004293528.1 CDS NAL212_0421 NC_015222.1 293668 294849 D PFAM: ATP-grasp fold, succinyl-CoA synthetase-type; ATP-citrate lyase/succinyl-CoA ligase; TIGRFAM: Succinyl-CoA synthetase, beta subunit; HAMAP: Succinyl-CoA synthetase, beta subunit; KEGG: neu:NE1810 malate--CoA ligase subunit beta; succinyl-CoA ligase [ADP-forming] subunit beta 293668..294849 Nitrosomonas sp. AL212 10296923 YP_004293529.1 CDS NAL212_0422 NC_015222.1 294859 295746 D SMART: CoA-binding; TIGRFAM: Succinyl-CoA ligase, alpha subunit; KEGG: neu:NE1811 succinyl-CoA synthetase subunit alpha; PFAM: CoA-binding; ATP-citrate lyase/succinyl-CoA ligase; succinyl-CoA synthetase subunit alpha 294859..295746 Nitrosomonas sp. AL212 10296924 YP_004293530.1 CDS NAL212_0423 NC_015222.1 295844 296371 R PFAM: Haemerythrin/HHE cation-binding motif; KEGG: mei:Msip34_2571 hemerythrin HHE cation binding domain protein; hemerythrin HHE cation binding domain-containing protein complement(295844..296371) Nitrosomonas sp. AL212 10296925 YP_004293531.1 CDS NAL212_0424 NC_015222.1 296762 297292 D PFAM: Transposase IS200-like; KEGG: pca:Pcar_1473 transposase, putative; transposase IS200-family protein 296762..297292 Nitrosomonas sp. AL212 10296926 YP_004293532.1 CDS NAL212_0425 NC_015222.1 297438 298058 D KEGG: net:Neut_1503 hypothetical protein; TIGRFAM: Uncharacterised protein family UPF0114, bacteria; PFAM: Uncharacterised protein family UPF0114; hypothetical protein 297438..298058 Nitrosomonas sp. AL212 10296927 YP_004293533.1 CDS NAL212_0426 NC_015222.1 298445 301567 D KEGG: rsh:Rsph17029_4185 Na-Ca exchanger/integrin-beta4; PFAM: Na-Ca exchanger/integrin-beta4; Haemolysin-type calcium-binding repeat; SMART: Na-Ca exchanger/integrin-beta4; Na-Ca exchanger/integrin-beta4 298445..301567 Nitrosomonas sp. AL212 10296928 YP_004293534.1 CDS NAL212_0427 NC_015222.1 301665 302195 R KEGG: nmu:Nmul_A0015 CinA-like; TIGRFAM: CinA, C-terminal; PFAM: CinA, C-terminal; CinA domain-containing protein complement(301665..302195) Nitrosomonas sp. AL212 10296929 YP_004293535.1 CDS NAL212_0428 NC_015222.1 302230 303057 R KEGG: nmu:Nmul_A2092 hypothetical protein; hypothetical protein complement(302230..303057) Nitrosomonas sp. AL212 10296930 YP_004293536.1 CDS NAL212_0429 NC_015222.1 303069 303584 R PFAM: Protein of unknown function DUF2141; KEGG: hne:HNE_1585 hypothetical protein; hypothetical protein complement(303069..303584) Nitrosomonas sp. AL212 10296931 YP_004293537.1 CDS NAL212_0430 NC_015222.1 303698 306016 D PFAM: DNA methylase, adenine-specific; N6 adenine-specific DNA methyltransferase, N12 class, N-terminal; KEGG: slt:Slit_2437 N-6 DNA methylase; N-6 DNA methylase 303698..306016 Nitrosomonas sp. AL212 10296932 YP_004293538.1 CDS NAL212_0431 NC_015222.1 306060 307346 D PFAM: Restriction endonuclease, type I, S subunit, EcoBI; KEGG: ava:Ava_3499 restriction modification system DNA specificity subunit; restriction modification system DNA specificity domain 306060..307346 Nitrosomonas sp. AL212 10296933 YP_004293539.1 CDS NAL212_0432 NC_015222.1 307504 307926 R PFAM: PilT protein, N-terminal; KEGG: bts:Btus_3192 PilT protein domain protein; PilT protein domain-containing protein complement(307504..307926) Nitrosomonas sp. AL212 10296934 YP_004293540.1 CDS NAL212_0433 NC_015222.1 307923 308174 R KEGG: gur:Gura_0714 prevent-host-death family protein; TIGRFAM: Prevent-host-death protein; PFAM: Prevent-host-death protein; prevent-host-death family protein complement(307923..308174) Nitrosomonas sp. AL212 10296935 YP_004293541.1 CDS NAL212_0434 NC_015222.1 308340 308543 D hypothetical protein 308340..308543 Nitrosomonas sp. AL212 10296936 YP_004293542.1 CDS NAL212_0435 NC_015222.1 308578 308910 D KEGG: cag:Cagg_2602 excinuclease ABC C subunit domain protein; PFAM: Excinuclease ABC, C subunit, N-terminal; SMART: Excinuclease ABC, C subunit, N-terminal; excinuclease ABC subunit C 308578..308910 Nitrosomonas sp. AL212 10296937 YP_004293543.1 CDS NAL212_0436 NC_015222.1 309194 312433 D TIGRFAM: Restriction endonuclease, type I, EcoRI, R subunit; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; Protein of unknown function DUF3387; KEGG: slt:Slit_2435 type I site-specific deoxyribonuclease, HsdR family; SMART: DEAD-like helicase, N-terminal; HsdR family type I site-specific deoxyribonuclease 309194..312433 Nitrosomonas sp. AL212 10296938 YP_004293544.1 CDS NAL212_0437 NC_015222.1 312488 312874 R KEGG: net:Neut_2249 hypothetical protein; hypothetical protein complement(312488..312874) Nitrosomonas sp. AL212 10296939 YP_004293545.1 CDS NAL212_0438 NC_015222.1 313411 317121 D TIGRFAM: 5-methyltetrahydrofolate--homocysteine methyltransferase; KEGG: nmu:Nmul_A0045 B12-dependent methionine synthase; PFAM: Homocysteine S-methyltransferase; Methionine synthase, cobalamin (vitamin B12)-binding module, cap; Cobalamin (vitamin B12)-binding; Vitamin B12-dependent methionine synthase, activation domain; Pterin-binding; methionine synthase 313411..317121 Nitrosomonas sp. AL212 10296940 YP_004293546.1 CDS NAL212_0439 NC_015222.1 317337 317522 D KEGG: nmu:Nmul_A0029 hypothetical protein; hypothetical protein 317337..317522 Nitrosomonas sp. AL212 10296941 YP_004293547.1 CDS NAL212_0440 NC_015222.1 317634 318389 R KEGG: neu:NE0599 hypothetical protein; HAMAP: Uncharacterised protein family UPF0289; PFAM: Uncharacterised protein family UPF0289; hypothetical protein complement(317634..318389) Nitrosomonas sp. AL212 10296942 YP_004293548.1 CDS NAL212_0441 NC_015222.1 318511 319107 R TIGRFAM: Dephospho-CoA kinase; KEGG: neu:NE0598 dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; dephospho-CoA kinase complement(318511..319107) Nitrosomonas sp. AL212 10296943 YP_004293549.1 CDS NAL212_0442 NC_015222.1 319111 319974 R KEGG: net:Neut_1044 prepilin peptidase; PFAM: Peptidase A24A, N-terminal; Peptidase A24A, prepilin type IV; prepilin peptidase complement(319111..319974) Nitrosomonas sp. AL212 10296944 YP_004293550.1 CDS NAL212_0443 NC_015222.1 320007 321230 R PFAM: Type II secretion system F domain; KEGG: neu:NE0596 type II secretion system protein; Type II secretion system F domain complement(320007..321230) Nitrosomonas sp. AL212 10296945 YP_004293551.1 CDS NAL212_0444 NC_015222.1 321428 322324 R PFAM: NAD-dependent epimerase/dehydratase; KEGG: nmu:Nmul_A2685 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(321428..322324) Nitrosomonas sp. AL212 10296946 YP_004293552.1 CDS NAL212_0445 NC_015222.1 322372 323424 D KEGG: nmu:Nmul_A2686 CDP-6-deoxy-delta-3,4-glucoseen reductase; PFAM: Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase, FAD-binding domain; Ferredoxin; ferredoxin--NAD(+) reductase 322372..323424 Nitrosomonas sp. AL212 10296947 YP_004293553.1 CDS NAL212_0446 NC_015222.1 323554 324729 R PFAM: HemY, N-terminal; KEGG: net:Neut_1040 HemY domain-containing protein; HemY domain-containing protein complement(323554..324729) Nitrosomonas sp. AL212 10296948 YP_004293554.1 CDS NAL212_0447 NC_015222.1 324876 325661 R PFAM: Tetrapyrrole biosynthesis, uroporphyrinogen III synthase; KEGG: nmu:Nmul_A2689 uroporphyrinogen-III synthase; uroporphyrinogen III synthase HEM4 complement(324876..325661) Nitrosomonas sp. AL212 10296949 YP_004293555.1 CDS NAL212_0448 NC_015222.1 325664 326620 R KEGG: nmu:Nmul_A2690 porphobilinogen deaminase; TIGRFAM: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; PFAM: Porphobilinogen deaminase, N-terminal; Porphobilinogen deaminase, C-terminal domain; porphobilinogen deaminase complement(325664..326620) Nitrosomonas sp. AL212 10296950 YP_004293556.1 CDS NAL212_0449 NC_015222.1 326745 329546 D KEGG: neu:NE0589 phosphoenolpyruvate carboxylase; PFAM: Phosphoenolpyruvate carboxylase; phosphoenolpyruvate carboxylase 326745..329546 Nitrosomonas sp. AL212 10296951 YP_004293557.1 CDS NAL212_0450 NC_015222.1 329606 330910 D PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; KEGG: nmu:Nmul_A2736 peptidase M16-like; peptidase M16 domain-containing protein 329606..330910 Nitrosomonas sp. AL212 10296952 YP_004293558.1 CDS NAL212_0451 NC_015222.1 330923 331477 D TIGRFAM: RNA methyltransferase, RsmD; KEGG: nmu:Nmul_A2735 hypothetical protein; PFAM: RNA methyltransferase, RsmD; methyltransferase 330923..331477 Nitrosomonas sp. AL212 10296953 YP_004293559.1 CDS NAL212_0452 NC_015222.1 331470 331949 D TIGRFAM: Coenzyme A biosynthesis protein; Cytidyltransferase-related; KEGG: nmu:Nmul_A2734 phosphopantetheine adenylyltransferase; PFAM: Cytidylyltransferase; pantetheine-phosphate adenylyltransferase 331470..331949 Nitrosomonas sp. AL212 10296954 YP_004293560.1 CDS NAL212_0453 NC_015222.1 331964 332224 D KEGG: tgr:Tgr7_0299 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 331964..332224 Nitrosomonas sp. AL212 10296955 YP_004293561.1 CDS NAL212_0454 NC_015222.1 332449 333291 D PFAM: Metal-dependent hydrolase HDOD; KEGG: app:CAP2UW1_1706 putative signal transduction protein; metal dependent phosphohydrolase 332449..333291 Nitrosomonas sp. AL212 10296956 YP_004293562.1 CDS NAL212_0455 NC_015222.1 333460 334701 D KEGG: net:Neut_2126 diguanylate phosphodiesterase; PFAM: Diguanylate phosphodiesterase, EAL domain; Metal-dependent hydrolase HDOD; SMART: Diguanylate phosphodiesterase, EAL domain; diguanylate phosphodiesterase metal dependent hydrolase domain 333460..334701 Nitrosomonas sp. AL212 10296957 YP_004293563.1 CDS NAL212_0456 NC_015222.1 334818 337391 R TIGRFAM: Cyanophycin synthetase; KEGG: app:CAP2UW1_3887 cyanophycin synthetase; PFAM: Mur ligase, central; Mur ligase, C-terminal; Carbamoyl-phosphate synthetase, large subunit, ATP-binding; cyanophycin synthetase complement(334818..337391) Nitrosomonas sp. AL212 10296958 YP_004293564.1 CDS NAL212_0457 NC_015222.1 337388 339709 R TIGRFAM: Cyanophycin synthetase; KEGG: nmu:Nmul_A2251 cyanophycin synthetase; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Mur ligase, central; cyanophycin synthetase complement(337388..339709) Nitrosomonas sp. AL212 10296959 YP_004293565.1 CDS NAL212_0458 NC_015222.1 339975 341258 D PFAM: Domain of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated domain; KEGG: nmu:Nmul_A2132 hypothetical protein; hypothetical protein 339975..341258 Nitrosomonas sp. AL212 10296960 YP_004293566.1 CDS NAL212_0459 NC_015222.1 341790 342710 D PFAM: Carbohydrate/purine kinase; KEGG: mfa:Mfla_2609 PfkB; PfkB domain-containing protein 341790..342710 Nitrosomonas sp. AL212 10296962 YP_004293567.1 CDS NAL212_0460 NC_015222.1 342713 344872 D TIGRFAM: Sucrose-phosphate synthase, glycosyltransferase domain; Sucrose phosphate synthase, sucrose phosphatase-like domain; HAD-superfamily hydrolase, subfamily IIB; KEGG: mei:Msip34_2763 sucrose-phosphate synthase; PFAM: Sucrose-phosphate synthase; Glycosyl transferase, group 1; Sucrose synthase; sucrose-phosphate synthase 342713..344872 Nitrosomonas sp. AL212 10296963 YP_004293568.1 CDS NAL212_0461 NC_015222.1 344894 346846 D KEGG: mei:Msip34_2764 alpha amylase catalytic region; PFAM: Glycosyl hydrolase, family 13, catalytic domain; amylosucrase 344894..346846 Nitrosomonas sp. AL212 10296964 YP_004293569.1 CDS NAL212_0462 NC_015222.1 347112 347711 D TIGRFAM: Lumazine-binding protein; KEGG: nmu:Nmul_A0009 riboflavin synthase subunit alpha; PFAM: Lumazine-binding protein; riboflavin synthase subunit alpha 347112..347711 Nitrosomonas sp. AL212 10296965 YP_004293570.1 CDS NAL212_0463 NC_015222.1 347733 348833 D KEGG: nmu:Nmul_A0010 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB; PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB; GTP cyclohydrolase II, RibA; 3,4-dihydroxy-2-butanone 4-phosphate synthase 347733..348833 Nitrosomonas sp. AL212 10296966 YP_004293571.1 CDS NAL212_0464 NC_015222.1 348891 349373 D KEGG: neu:NE2557 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 6,7-dimethyl-8-ribityllumazine synthase; 6,7-dimethyl-8-ribityllumazine synthase 348891..349373 Nitrosomonas sp. AL212 10296967 YP_004293572.1 CDS NAL212_0465 NC_015222.1 349370 349870 D KEGG: nmu:Nmul_A0012 NusB antitermination factor; TIGRFAM: NusB antitermination factor; PFAM: NusB/RsmB/TIM44; NusB antitermination factor 349370..349870 Nitrosomonas sp. AL212 10296968 YP_004293573.1 CDS NAL212_0466 NC_015222.1 349880 350851 D TIGRFAM: Thiamine-monophosphate kinase; KEGG: nmu:Nmul_A0013 thiamine-monophosphate kinase; PFAM: AIR synthase-related protein; thiamine-monophosphate kinase 349880..350851 Nitrosomonas sp. AL212 10296969 YP_004293574.1 CDS NAL212_0467 NC_015222.1 350832 351383 D PFAM: Phosphatidylglycerophosphatase A; KEGG: net:Neut_2520 phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase A 350832..351383 Nitrosomonas sp. AL212 10296970 YP_004293575.1 CDS NAL212_0468 NC_015222.1 351425 352900 R KEGG: kko:Kkor_1927 anion transporter; TIGRFAM: Sodium/sulphate symporter; PFAM: Sodium/sulphate symporter; anion transporter complement(351425..352900) Nitrosomonas sp. AL212 10296971 YP_004293576.1 CDS NAL212_0469 NC_015222.1 353143 353562 R KEGG: nmu:Nmul_A1630 hypothetical protein; hypothetical protein complement(353143..353562) Nitrosomonas sp. AL212 10296972 YP_004293577.1 CDS NAL212_0470 NC_015222.1 353751 354116 R PFAM: Protein of unknown function DUF1486; KEGG: vcn:VOLCADRAFT_106361 hypothetical protein; hypothetical protein complement(353751..354116) Nitrosomonas sp. AL212 10296973 YP_004293578.1 CDS NAL212_0471 NC_015222.1 354159 354941 R PFAM: Uncharacterised protein family UPF0246; KEGG: maq:Maqu_2499 hypothetical protein; hypothetical protein complement(354159..354941) Nitrosomonas sp. AL212 10296974 YP_004293579.1 CDS NAL212_0472 NC_015222.1 355536 357041 D KEGG: neu:NE0583 hypothetical protein; hypothetical protein 355536..357041 Nitrosomonas sp. AL212 10296975 YP_004293580.1 CDS NAL212_0473 NC_015222.1 357162 359090 R KEGG: neu:NE0458 hypothetical protein; hypothetical protein complement(357162..359090) Nitrosomonas sp. AL212 10296976 YP_004293581.1 CDS NAL212_0474 NC_015222.1 359281 360078 R KEGG: neu:NE0459 hypothetical protein; TIGRFAM: Flagellar biosynthesis protein FliR; PFAM: Type III secretion system inner membrane R protein; flagellar biosynthetic protein FliR complement(359281..360078) Nitrosomonas sp. AL212 10296977 YP_004293582.1 CDS NAL212_0475 NC_015222.1 360132 360404 R KEGG: net:Neut_2060 flagellar biosynthetic protein FliQ; TIGRFAM: Flagellar biosynthesis protein FliQ; PFAM: Bacterial export protein FliQ, family 3; flagellar biosynthetic protein FliQ complement(360132..360404) Nitrosomonas sp. AL212 10296978 YP_004293583.1 CDS NAL212_0476 NC_015222.1 360418 361164 R KEGG: net:Neut_2059 flagellar biosynthesis protein FliP; TIGRFAM: Flagellar transport protein FliP; PFAM: Type III secretion system inner membrane P protein; flagellar biosynthetic protein FliP complement(360418..361164) Nitrosomonas sp. AL212 10296979 YP_004293584.1 CDS NAL212_0477 NC_015222.1 361262 361699 R KEGG: net:Neut_2058 flagellar biosynthesis protein, FliO; TIGRFAM: Flagellar biosynthesis protein, FliO; PFAM: Flagellar biosynthesis protein, FliO; flagellar biosynthetic protein FliO complement(361262..361699) Nitrosomonas sp. AL212 10296980 YP_004293585.1 CDS NAL212_0478 NC_015222.1 361710 362252 R KEGG: meh:M301_1010 flagellar motor switch protein FliN; TIGRFAM: Flagellar motor switch FliN; PFAM: Surface presentation of antigen (SpoA); flagellar motor switch protein FliN complement(361710..362252) Nitrosomonas sp. AL212 10296981 YP_004293586.1 CDS NAL212_0479 NC_015222.1 362269 363246 R KEGG: bpy:Bphyt_3777 flagellar motor switch protein FliM; TIGRFAM: Flagellar motor switch protein FliM; PFAM: Flagellar motor switch protein FliM; Surface presentation of antigen (SpoA); flagellar motor switch protein FliM complement(362269..363246) Nitrosomonas sp. AL212 10296982 YP_004293587.1 CDS NAL212_0480 NC_015222.1 363254 363748 R PFAM: Flagellar basal body-associated protein FliL; KEGG: neu:NE0465 flagellar basal body-associated protein FliL; flagellar basal body-associated protein FliL complement(363254..363748) Nitrosomonas sp. AL212 10296983 YP_004293588.1 CDS NAL212_0481 NC_015222.1 364086 365270 R PFAM: Flagellar hook-length control protein-like, C-terminal domain; KEGG: gca:Galf_1064 flagellar hook-length control protein-like, C-terminal domain; flagellar hook-length control protein-like protein complement(364086..365270) Nitrosomonas sp. AL212 10296984 YP_004293589.1 CDS NAL212_0482 NC_015222.1 365351 365809 R KEGG: neu:NE2087 flagellar FliJ protein; TIGRFAM: Flagellar export FliJ; PFAM: Flagellar export FliJ; flagellar export protein FliJ complement(365351..365809) Nitrosomonas sp. AL212 10296985 YP_004293590.1 CDS NAL212_0483 NC_015222.1 365839 367239 R SMART: ATPase, AAA+ type, core; TIGRFAM: Flagellar export ATPase, FliI, clade 1; ATPase, type III secretion system, FliI/YscN; KEGG: neu:NE2086 flagellar ATP synthase; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; flagellar protein export ATPase FliI complement(365839..367239) Nitrosomonas sp. AL212 10296986 YP_004293591.1 CDS NAL212_0484 NC_015222.1 367241 367951 R PFAM: Flagellar assembly protein FliH/Type III secretion system HrpE; KEGG: neu:NE2085 flagellar assembly protein FliH; flagellar assembly protein fliH/Type III secretion system HrpE complement(367241..367951) Nitrosomonas sp. AL212 10296987 YP_004293592.1 CDS NAL212_0485 NC_015222.1 368030 369025 R KEGG: net:Neut_0744 flagellar motor switch protein FliG; TIGRFAM: Flagellar motor switch protein FliG; PFAM: Flagellar motor switch protein FliG, C-terminal; flagellar motor switch protein FliG complement(368030..369025) Nitrosomonas sp. AL212 10296988 YP_004293593.1 CDS NAL212_0486 NC_015222.1 369018 370733 R KEGG: net:Neut_0745 flagellar M-ring protein FliF; TIGRFAM: Flagellar FliF M-ring protein; PFAM: Secretory protein YscJ/FliF; Flagellar M-ring C-terminal; flagellar M-ring protein FliF complement(369018..370733) Nitrosomonas sp. AL212 10296989 YP_004293594.1 CDS NAL212_0487 NC_015222.1 371067 372257 D KEGG: neu:NE2082 putative two-component sensor; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS; PAS/PAC sensor signal transduction histidine kinase 371067..372257 Nitrosomonas sp. AL212 10296990 YP_004293595.1 CDS NAL212_0488 NC_015222.1 372262 373575 D KEGG: neu:NE2081 sigma-54 dependent response regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core; two component, sigma54 specific, transcriptional regulator, Fis family 372262..373575 Nitrosomonas sp. AL212 10296991 YP_004293596.1 CDS NAL212_0489 NC_015222.1 373676 373999 D KEGG: neu:NE2080 flagellar hook-basal body protein FliE; TIGRFAM: Flagellar hook-basal body complex protein FliE; PFAM: Flagellar hook-basal body complex protein FliE; flagellar hook-basal body complex subunit FliE 373676..373999 Nitrosomonas sp. AL212 10296992 YP_004293597.1 CDS NAL212_0490 NC_015222.1 374038 375891 R KEGG: gca:Galf_2156 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter complement(374038..375891) Nitrosomonas sp. AL212 10296993 YP_004293598.1 CDS NAL212_0491 NC_015222.1 376184 376432 R KEGG: reh:H16_A1991 hypothetical protein; hypothetical protein complement(376184..376432) Nitrosomonas sp. AL212 10296994 YP_004293599.1 CDS NAL212_0492 NC_015222.1 376823 378439 D KEGG: amr:AM1_6172 IS5 family transposase; IS5 family transposase 376823..378439 Nitrosomonas sp. AL212 10296995 YP_004293600.1 CDS NAL212_0493 NC_015222.1 378743 380050 R PFAM: Transposase, IS4-like; KEGG: dde:Dde_2849 ISPg7, transposase; transposase IS4 family protein complement(378743..380050) Nitrosomonas sp. AL212 10296996 YP_004293601.1 CDS NAL212_0494 NC_015222.1 380379 380894 R KEGG: der:Dere_GG10426 GG10426 gene product from transcript GG10426-RA; hypothetical protein complement(380379..380894) Nitrosomonas sp. AL212 10296997 YP_004293602.1 CDS NAL212_0495 NC_015222.1 381249 382004 R PFAM: Spermine synthase; KEGG: slt:Slit_2028 spermine synthase; spermine synthase complement(381249..382004) Nitrosomonas sp. AL212 10296998 YP_004293603.1 CDS NAL212_0496 NC_015222.1 382021 383292 R PFAM: MgtC/SapB transporter; KEGG: neu:NE0009 MgtC family membrane protein; MgtC/SapB transporter complement(382021..383292) Nitrosomonas sp. AL212 10296999 YP_004293604.1 CDS NAL212_0497 NC_015222.1 383282 385054 R KEGG: net:Neut_0131 single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: Bacterial RecJ exonuclease; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1; single-stranded-DNA-specific exonuclease RecJ complement(383282..385054) Nitrosomonas sp. AL212 10297000 YP_004293605.1 CDS NAL212_0498 NC_015222.1 385096 385944 R PFAM: Transporter-associated domain; Cystathionine beta-synthase, core; KEGG: net:Neut_1786 CBS domain-containing protein; transporter-associated protein complement(385096..385944) Nitrosomonas sp. AL212 10297001 YP_004293606.1 CDS NAL212_0499 NC_015222.1 386034 386540 R manually curated; TIGRFAM: Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted; KEGG: neu:NE2333 hypothetical protein; PFAM: Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted; hypothetical protein complement(386034..386540) Nitrosomonas sp. AL212 10297002 YP_004293607.1 CDS NAL212_0500 NC_015222.1 386506 387561 R PFAM: PhoH-like protein; KEGG: nmu:Nmul_A2696 PhoH-like protein; phoH family protein complement(386506..387561) Nitrosomonas sp. AL212 10297003 YP_004293608.1 CDS NAL212_0501 NC_015222.1 387589 388917 R KEGG: nmu:Nmul_A2692 (dimethylallyl)adenosine tRNA methylthiotransferase; PFAM: Methylthiotransferase, N-terminal; Radical SAM; Deoxyribonuclease/rho motif-related TRAM; manually curated; TIGRFAM: tRNA-i(6)A37 modification enzyme MiaB; Methylthiotransferase; SMART: Elongator protein 3/MiaB/NifB; HAMAP: tRNA-i(6)A37 modification enzyme MiaB; (dimethylallyl)adenosine tRNA methylthiotransferase MiaB complement(387589..388917) Nitrosomonas sp. AL212 10297004 YP_004293609.1 CDS NAL212_0502 NC_015222.1 388954 389244 R KEGG: rfr:Rfer_3366 hypothetical protein; hypothetical protein complement(388954..389244) Nitrosomonas sp. AL212 10297005 YP_004293610.1 CDS NAL212_0503 NC_015222.1 389812 390993 D TIGRFAM: Thiolase; KEGG: neu:NE2262 beta-ketothiolase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal; acetyl-CoA acetyltransferase 389812..390993 Nitrosomonas sp. AL212 10297006 YP_004293611.1 CDS NAL212_0504 NC_015222.1 391145 391528 D PFAM: ATPase, F0 complex, subunit I; KEGG: nmu:Nmul_A0303 ATP synthase protein I; ATP synthase I chain 391145..391528 Nitrosomonas sp. AL212 10297007 YP_004293612.1 CDS NAL212_0505 NC_015222.1 391552 392361 D KEGG: net:Neut_0271 F0F1 ATP synthase subunit A; TIGRFAM: ATPase, F0 complex, subunit A; PFAM: ATPase, F0 complex, subunit A; ATP synthase F0 subunit A 391552..392361 Nitrosomonas sp. AL212 10297008 YP_004293613.1 CDS NAL212_0506 NC_015222.1 392410 392682 D KEGG: neu:NE0201 F0F1 ATP synthase subunit C; TIGRFAM: ATPase, F0 complex, subunit C, bacterial/chloroplast; PFAM: ATPase, F0/V0 complex, subunit C; ATP synthase F0 subunit C 392410..392682 Nitrosomonas sp. AL212 10297009 YP_004293614.1 CDS NAL212_0507 NC_015222.1 392723 393196 D KEGG: net:Neut_0273 F0F1 ATP synthase subunit B; TIGRFAM: ATPase, F0 complex, subunit B, bacterial; PFAM: ATPase, F0 complex, subunit B/B', bacterial/chloroplast; ATP synthase F0 subunit B 392723..393196 Nitrosomonas sp. AL212 10297010 YP_004293615.1 CDS NAL212_0508 NC_015222.1 393196 393732 D KEGG: nmu:Nmul_A0307 ATP synthase F1, delta subunit; TIGRFAM: ATPase, F1 complex, OSCP/delta subunit; PFAM: ATPase, F1 complex, OSCP/delta subunit; ATP synthase F1 subunit delta 393196..393732 Nitrosomonas sp. AL212 10297011 YP_004293616.1 CDS NAL212_0509 NC_015222.1 393745 395286 D KEGG: nmu:Nmul_A0308 F0F1 ATP synthase subunit alpha; TIGRFAM: ATPase, F1 complex, alpha subunit; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATP synthase F1 subunit alpha 393745..395286 Nitrosomonas sp. AL212 10297012 YP_004293617.1 CDS NAL212_0510 NC_015222.1 395291 396175 D KEGG: net:Neut_0276 F0F1 ATP synthase subunit gamma; TIGRFAM: ATPase, F1 complex, gamma subunit; PFAM: ATPase, F1 complex, gamma subunit; ATP synthase F1 subunit gamma 395291..396175 Nitrosomonas sp. AL212 10297013 YP_004293618.1 CDS NAL212_0511 NC_015222.1 396204 397583 D TIGRFAM: ATPase, F1 complex, beta subunit; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; KEGG: nmu:Nmul_A0310 F0F1 ATP synthase subunit beta; SMART: ATPase, AAA+ type, core; ATP synthase F1 subunit beta 396204..397583 Nitrosomonas sp. AL212 10297014 YP_004293619.1 CDS NAL212_0512 NC_015222.1 397601 398023 D KEGG: neu:NE0207 F0F1 ATP synthase subunit epsilon; TIGRFAM: ATPase, F1 complex, delta/epsilon subunit; PFAM: ATPase, F1 complex, delta/epsilon subunit, N-terminal; ATPase, F1 complex, delta/epsilon subunit, C-terminal; ATP synthase F1 subunit epsilon 397601..398023 Nitrosomonas sp. AL212 10297015 YP_004293620.1 CDS NAL212_0513 NC_015222.1 398280 399653 D KEGG: nmu:Nmul_A0312 UDP-N-acetylglucosamine pyrophosphorylase; manually curated; TIGRFAM: Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; Bacterial transferase hexapeptide repeat; HAMAP: Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase; bifunctional protein glmU 398280..399653 Nitrosomonas sp. AL212 10297016 YP_004293621.1 CDS NAL212_0514 NC_015222.1 399716 401572 D TIGRFAM: Glucosamine-fructose-6-phosphate aminotransferase, isomerising; KEGG: nmu:Nmul_A0313 glucosamine--fructose-6-phosphate aminotransferase, isomerizing; PFAM: Sugar isomerase (SIS); Glutamine amidotransferase, class-II; glucosamine/fructose-6-phosphate aminotransferase 399716..401572 Nitrosomonas sp. AL212 10297017 YP_004293622.1 CDS NAL212_0515 NC_015222.1 401731 402456 D KEGG: nmu:Nmul_A2722 hypothetical protein; TIGRFAM: Protein of unknown function DUF28; PFAM: Protein of unknown function DUF28; hypothetical protein 401731..402456 Nitrosomonas sp. AL212 10297018 YP_004293623.1 CDS NAL212_0516 NC_015222.1 402484 403002 D KEGG: slt:Slit_0512 crossover junction endodeoxyribonuclease RuvC; manually curated; TIGRFAM: Crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; HAMAP: Crossover junction endodeoxyribonuclease RuvC; Crossover junction endodeoxyribonuclease ruvC 402484..403002 Nitrosomonas sp. AL212 10297019 YP_004293624.1 CDS NAL212_0517 NC_015222.1 402999 403580 D TIGRFAM: Bacterial DNA recombination protein RuvA; HAMAP: Bacterial DNA recombination protein RuvA; KEGG: nmu:Nmul_A2720 Holliday junction DNA helicase RuvA; PFAM: DNA helicase, Holliday junction RuvA type, domain I, bacterial; DNA helicase, Holliday junction RuvA type, domain III, C-terminal; Holliday junction ATP-dependent DNA helicase ruvA 402999..403580 Nitrosomonas sp. AL212 10297020 YP_004293625.1 CDS NAL212_0518 NC_015222.1 403603 404649 D TIGRFAM: DNA helicase, Holliday junction RuvB type; PFAM: DNA helicase, Holliday junction RuvB type, N-terminal; DNA helicase, Holliday junction RuvB type, C-terminal; KEGG: nmu:Nmul_A2719 Holliday junction DNA helicase RuvB; SMART: ATPase, AAA+ type, core; Holliday junction DNA helicase RuvB 403603..404649 Nitrosomonas sp. AL212 10297021 YP_004293626.1 CDS NAL212_0519 NC_015222.1 404673 405104 D KEGG: ure:UREG_02430 hypothetical protein; hypothetical protein 404673..405104 Nitrosomonas sp. AL212 10297022 YP_004293627.1 CDS NAL212_0520 NC_015222.1 405231 405902 D PFAM: Inhibitor of apoptosis-promoting Bax1-related; KEGG: net:Neut_1715 hypothetical protein; hypothetical protein 405231..405902 Nitrosomonas sp. AL212 10297023 YP_004293628.1 CDS NAL212_0521 NC_015222.1 405988 406167 D KEGG: hna:Hneap_0467 hypothetical protein; hypothetical protein 405988..406167 Nitrosomonas sp. AL212 10297024 YP_004293629.1 CDS NAL212_0523 NC_015222.1 407763 408644 D KEGG: net:Neut_2395 cytochrome c oxidase, subunit II; TIGRFAM: Cytochrome c oxidase, subunit II; PFAM: Cytochrome c oxidase subunit II C-terminal; Cytochrome C oxidase subunit II, transmembrane domain; cytochrome c oxidase subunit II 407763..408644 Nitrosomonas sp. AL212 10297026 YP_004293630.1 CDS NAL212_0524 NC_015222.1 408657 410237 D KEGG: neu:NE1016 cytochrome c oxidase, subunit I; TIGRFAM: Cytochrome c oxidase, subunit I bacterial type; PFAM: Cytochrome c oxidase, subunit I; cytochrome c oxidase subunit I 408657..410237 Nitrosomonas sp. AL212 10297027 YP_004293631.1 CDS NAL212_0525 NC_015222.1 410256 410360 D hypothetical protein 410256..410360 Nitrosomonas sp. AL212 10297028 YP_004293632.1 CDS NAL212_0526 NC_015222.1 410354 410899 D PFAM: Cytochrome c oxidase assembly protein CtaG/Cox11; KEGG: nmu:Nmul_A0185 cytochrome c oxidase assembly protein; cytochrome c oxidase assembly protein CtaG/Cox11 410354..410899 Nitrosomonas sp. AL212 10297029 YP_004293633.1 CDS NAL212_0527 NC_015222.1 410910 411119 D KEGG: neu:NE1014 putative transmembrane protein; putative transmembrane protein 410910..411119 Nitrosomonas sp. AL212 10297030 YP_004293634.1 CDS NAL212_0528 NC_015222.1 411153 412010 D KEGG: nmu:Nmul_A0187 cytochrome c oxidase, subunit III; PFAM: Cytochrome c oxidase, subunit III; cytochrome-c oxidase 411153..412010 Nitrosomonas sp. AL212 10297031 YP_004293635.1 CDS NAL212_0529 NC_015222.1 412201 412923 D PFAM: Surfeit locus 1; KEGG: neu:NE1012 SURF1 family protein; surfeit locus 1 family protein 412201..412923 Nitrosomonas sp. AL212 10297032 YP_004293636.1 CDS NAL212_0530 NC_015222.1 412892 413473 D KEGG: nmu:Nmul_A0190 putative transmembrane protein; putative transmembrane protein 412892..413473 Nitrosomonas sp. AL212 10297033 YP_004293637.1 CDS NAL212_0531 NC_015222.1 413552 414445 D KEGG: net:Neut_2389 protoheme IX farnesyltransferase; TIGRFAM: Protohaem IX farnesyltransferase; PFAM: UbiA prenyltransferase; protoheme IX farnesyltransferase 413552..414445 Nitrosomonas sp. AL212 10297034 YP_004293638.1 CDS NAL212_0532 NC_015222.1 414541 415917 R KEGG: nmu:Nmul_A0193 D-lactate dehydrogenase (cytochrome); PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal; D-lactate dehydrogenase complement(414541..415917) Nitrosomonas sp. AL212 10297035 YP_004293639.1 CDS NAL212_0533 NC_015222.1 415941 416516 R PFAM: Transport-associated; KEGG: net:Neut_2387 transport-associated; transport-associated protein complement(415941..416516) Nitrosomonas sp. AL212 10297036 YP_004293640.1 CDS NAL212_0534 NC_015222.1 416617 417123 D KEGG: neu:NE1006 CheW-like domain-containing protein; PFAM: CheW-like protein; SMART: CheW-like protein; CheW protein 416617..417123 Nitrosomonas sp. AL212 10297037 YP_004293641.1 CDS NAL212_0535 NC_015222.1 417192 418094 D TIGRFAM: Acetylglutamate kinase; KEGG: neu:NE1005 acetylglutamate kinase; PFAM: Aspartate/glutamate/uridylate kinase; acetylglutamate kinase 417192..418094 Nitrosomonas sp. AL212 10297038 YP_004293642.1 CDS NAL212_0536 NC_015222.1 418199 418924 R KEGG: nmu:Nmul_A0673 RNA methyltransferase TrmH, group 1; TIGRFAM: RNA methyltransferase TrmH, group 1; PFAM: tRNA/rRNA methyltransferase, SpoU; RNA methyltransferase, TrmH family, group 1 complement(418199..418924) Nitrosomonas sp. AL212 10297039 YP_004293643.1 CDS NAL212_0537 NC_015222.1 419045 419296 D hypothetical protein 419045..419296 Nitrosomonas sp. AL212 10297040 YP_004293644.1 CDS NAL212_0538 NC_015222.1 419324 419776 D PFAM: Cytochrome c, class I; KEGG: nhl:Nhal_1555 nitric-oxide reductase; cytochrome c class I 419324..419776 Nitrosomonas sp. AL212 10297041 YP_004293645.1 CDS NAL212_0539 NC_015222.1 419843 421177 D KEGG: nhl:Nhal_1556 nitric-oxide reductase; PFAM: Cytochrome c oxidase, subunit I; nitric-oxide reductase 419843..421177 Nitrosomonas sp. AL212 10297042 YP_004293646.1 CDS NAL212_0540 NC_015222.1 421183 422019 D PFAM: ATPase, AAA-5; CbbQ/NirQ/NorQ C-terminal; KEGG: nhl:Nhal_1557 ATPase associated with various cellular activities AAA_5; ATPase 421183..422019 Nitrosomonas sp. AL212 10297043 YP_004293647.1 CDS NAL212_0541 NC_015222.1 422022 423977 D KEGG: nhl:Nhal_1558 von Willebrand factor type A; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A; von Willebrand factor type A 422022..423977 Nitrosomonas sp. AL212 10297044 YP_004293648.1 CDS NAL212_0542 NC_015222.1 424213 427332 D PFAM: DNA methylase N-4/N-6; KEGG: alv:Alvin_1538 DNA methylase N-4/N-6 domain protein; DNA methylase N-4/N-6 domain-containing protein 424213..427332 Nitrosomonas sp. AL212 10297045 YP_004293649.1 CDS NAL212_0543 NC_015222.1 427349 430192 D PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: mca:MCA0551 hypothetical protein; type III restriction protein res subunit 427349..430192 Nitrosomonas sp. AL212 10297046 YP_004293650.1 CDS NAL212_0544 NC_015222.1 430260 431732 R TIGRFAM: Anthranilate synthase component I, PabB-like; KEGG: nmu:Nmul_A2369 anthranilate synthase component I; PFAM: Chorismate binding, C-terminal; Anthranilate synthase component I, N-terminal; anthranilate synthase component I complement(430260..431732) Nitrosomonas sp. AL212 10297047 YP_004293651.1 CDS NAL212_0545 NC_015222.1 431741 432466 R TIGRFAM: 2-phosphoglycolate phosphatase, prokaryotic; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; KEGG: neu:NE2149 phosphoglycolate phosphatase; PFAM: Haloacid dehalogenase-like hydrolase; phosphoglycolate phosphatase complement(431741..432466) Nitrosomonas sp. AL212 10297048 YP_004293652.1 CDS NAL212_0546 NC_015222.1 432507 433184 R TIGRFAM: Ribulose-phosphate 3-epimerase; KEGG: net:Neut_2096 ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase complement(432507..433184) Nitrosomonas sp. AL212 10297049 YP_004293653.1 CDS NAL212_0547 NC_015222.1 433356 433631 R PFAM: Transposase IS3/IS911family; KEGG: alv:Alvin_1732 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein complement(433356..433631) Nitrosomonas sp. AL212 10297050 YP_004293654.1 CDS NAL212_0548 NC_015222.1 433733 436015 R KEGG: sno:Snov_2115 hypothetical protein; hypothetical protein complement(433733..436015) Nitrosomonas sp. AL212 10297051 YP_004293655.1 CDS NAL212_0549 NC_015222.1 436549 436932 D PFAM: ApaG domain; KEGG: neu:NE1573 ApaG; ApaG domain-containing protein 436549..436932 Nitrosomonas sp. AL212 10297052 YP_004293656.1 CDS NAL212_0550 NC_015222.1 436990 437694 D PFAM: Tetrapyrrole methylase; KEGG: nmu:Nmul_A1067 uroporphyrin-III C/tetrapyrrole methyltransferase; uroporphyrin-III C/tetrapyrrole methyltransferase 436990..437694 Nitrosomonas sp. AL212 10297053 YP_004293657.1 CDS NAL212_0551 NC_015222.1 437733 438128 R TIGRFAM: Glyoxalase I; KEGG: nmu:Nmul_A2625 glyoxalase I; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase complement(437733..438128) Nitrosomonas sp. AL212 10297054 YP_004293658.1 CDS NAL212_0552 NC_015222.1 438129 438317 R PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: neu:NE1426 rubredoxin:rubredoxin-type Fe(Cys)4 protein; rubredoxin-type Fe(Cys)4 protein complement(438129..438317) Nitrosomonas sp. AL212 10297055 YP_004293659.1 CDS NAL212_0553 NC_015222.1 438370 439227 D KEGG: nmu:Nmul_A2627 phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; phosphomethylpyrimidine kinase 438370..439227 Nitrosomonas sp. AL212 10297056 YP_004293660.1 CDS NAL212_0554 NC_015222.1 439214 439846 D TIGRFAM: Thiamine monophosphate synthase; HAMAP: Thiamine monophosphate synthase; KEGG: neu:NE1424 thiamine-phosphate pyrophosphorylase; PFAM: Thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase 439214..439846 Nitrosomonas sp. AL212 10297057 YP_004293661.1 CDS NAL212_0555 NC_015222.1 439903 441183 D TIGRFAM: Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase; KEGG: nmu:Nmul_A2629 glutamate-1-semialdehyde aminotransferase; PFAM: Aminotransferase class-III; glutamate-1-semialdehyde 2,1-aminomutase 439903..441183 Nitrosomonas sp. AL212 10297058 YP_004293662.1 CDS NAL212_0556 NC_015222.1 441272 441937 R PFAM: Cytochrome c, class I; KEGG: neu:NE0273 cytochrome c, class IC:cytochrome c, class I; cytochrome c class I complement(441272..441937) Nitrosomonas sp. AL212 10297059 YP_004293663.1 CDS NAL212_0557 NC_015222.1 442075 442668 D PFAM: Sporulation-related domain; KEGG: net:Neut_0306 hypothetical protein; sporulation domain-containing protein 442075..442668 Nitrosomonas sp. AL212 10297060 YP_004293664.1 CDS NAL212_0558 NC_015222.1 442778 443584 D TIGRFAM: Peptidase M24A, methionine aminopeptidase, subfamily 1; KEGG: neu:NE0275 methionine aminopeptidase; PFAM: Peptidase M24, structural domain; methionine aminopeptidase 442778..443584 Nitrosomonas sp. AL212 10297061 YP_004293665.1 CDS NAL212_0559 NC_015222.1 443613 444335 D TIGRFAM: Ribonuclease phosphorolytic, bacterial-type; KEGG: nmu:Nmul_A0066 ribonuclease PH; PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; ribonuclease PH 443613..444335 Nitrosomonas sp. AL212 10297062 YP_004293666.1 CDS NAL212_0560 NC_015222.1 444346 444948 D TIGRFAM: Ham1-like protein; KEGG: nmu:Nmul_A0067 putative deoxyribonucleotide triphosphate pyrophosphatase; PFAM: Ham1-like protein; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase 444346..444948 Nitrosomonas sp. AL212 10297063 YP_004293667.1 CDS NAL212_0561 NC_015222.1 445123 446016 D KEGG: ppr:PBPRB1378 hypothetical protein; hypothetical protein 445123..446016 Nitrosomonas sp. AL212 10297064 YP_004293668.1 CDS NAL212_0562 NC_015222.1 446345 447208 D KEGG: lch:Lcho_2325 hypothetical protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial; PEP motif putative anchor domain-containing protein 446345..447208 Nitrosomonas sp. AL212 10297065 YP_004293669.1 CDS NAL212_0563 NC_015222.1 447229 447534 D KEGG: shi:Shel_22480 hypothetical protein; hypothetical protein 447229..447534 Nitrosomonas sp. AL212 10297066 YP_004293670.1 CDS NAL212_0565 NC_015222.1 447944 448168 R KEGG: rrs:RoseRS_3426 hypothetical protein; hypothetical protein complement(447944..448168) Nitrosomonas sp. AL212 10297068 YP_004293671.1 CDS NAL212_0566 NC_015222.1 448165 448422 R KEGG: nwa:Nwat_1966 hypothetical protein; hypothetical protein complement(448165..448422) Nitrosomonas sp. AL212 10297069 YP_004293672.1 CDS NAL212_0567 NC_015222.1 448475 449317 R TIGRFAM: S-formylglutathione hydrolase; KEGG: net:Neut_1386 carboxylesterase; PFAM: Putative esterase; S-formylglutathione hydrolase complement(448475..449317) Nitrosomonas sp. AL212 10297070 YP_004293673.1 CDS NAL212_0568 NC_015222.1 449320 450426 R KEGG: bav:BAV3289 glutathione-dependent formaldehyde dehydrogenase; TIGRFAM: Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase complement(449320..450426) Nitrosomonas sp. AL212 10297071 YP_004293674.1 CDS NAL212_0569 NC_015222.1 450442 450933 R PFAM: Protein-tyrosine phosphatase, low molecular weight; KEGG: net:Neut_0914 protein tyrosine phosphatase; SMART: Protein-tyrosine phosphatase, low molecular weight; protein tyrosine phosphatase complement(450442..450933) Nitrosomonas sp. AL212 10297072 YP_004293675.1 CDS NAL212_0570 NC_015222.1 451324 453003 D PFAM: Serine/threonine-protein kinase-like domain; KEGG: mgm:Mmc1_1921 serine/threonine protein kinase; serine/threonine protein kinase 451324..453003 Nitrosomonas sp. AL212 10297073 YP_004293676.1 CDS NAL212_0571 NC_015222.1 453048 454619 R KEGG: bid:Bind_2756 galactose oxidase; PFAM: Domain of unknown function DUF1929; Glyoxal oxidase, N-terminal; galactose oxidase complement(453048..454619) Nitrosomonas sp. AL212 10297074 YP_004293677.1 CDS NAL212_0572 NC_015222.1 454988 455833 D PFAM: Metal-dependent hydrolase HDOD; KEGG: slt:Slit_1376 putative signal transduction protein; metal-dependent hydrolase HDOD 454988..455833 Nitrosomonas sp. AL212 10297075 YP_004293678.1 CDS NAL212_0573 NC_015222.1 455845 456705 R KEGG: nmu:Nmul_A2562 indole-3-glycerol-phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase; indole-3-glycerol-phosphate synthase complement(455845..456705) Nitrosomonas sp. AL212 10297076 YP_004293679.1 CDS NAL212_0574 NC_015222.1 456711 457736 R TIGRFAM: Anthranilate phosphoribosyl transferase; KEGG: nmu:Nmul_A2563 anthranilate phosphoribosyltransferase; PFAM: Glycosyl transferase, family 3; Glycosyl transferase, family 3, N-terminal; anthranilate phosphoribosyltransferase complement(456711..457736) Nitrosomonas sp. AL212 10297077 YP_004293680.1 CDS NAL212_0575 NC_015222.1 457764 458327 R TIGRFAM: Anthranilate synthase, glutamine amidotransferase domain; KEGG: slt:Slit_0277 glutamine amidotransferase of anthranilate synthase; PFAM: Glutamine amidotransferase class-I, C-terminal; glutamine amidotransferase of anthranilate synthase complement(457764..458327) Nitrosomonas sp. AL212 10297078 YP_004293681.1 CDS NAL212_0576 NC_015222.1 458569 458988 D KEGG: nmu:Nmul_A1951 30S ribosomal protein S6; TIGRFAM: Ribosomal protein S6; PFAM: Ribosomal protein S6; 30S ribosomal protein S6 458569..458988 Nitrosomonas sp. AL212 10297079 YP_004293682.1 CDS NAL212_0577 NC_015222.1 459000 459296 D KEGG: nmu:Nmul_A1950 primosomal replication protein N; manually curated; PFAM: Primosome PriB/single-strand DNA-binding; single-strand binding protein/Primosomal replication protein n 459000..459296 Nitrosomonas sp. AL212 10297080 YP_004293683.1 CDS NAL212_0578 NC_015222.1 459315 459599 D KEGG: nmu:Nmul_A1949 30S ribosomal protein S18; TIGRFAM: Ribosomal protein S18; PFAM: Ribosomal protein S18; 30S ribosomal protein S18 459315..459599 Nitrosomonas sp. AL212 10297081 YP_004293684.1 CDS NAL212_0579 NC_015222.1 459611 460066 D KEGG: nmu:Nmul_A1948 ribosomal protein L9; TIGRFAM: Ribosomal protein L9, bacteria/chloroplast; PFAM: Ribosomal protein L9, C-terminal; Ribosomal protein L9, N-terminal; 50S ribosomal protein L9 459611..460066 Nitrosomonas sp. AL212 10297082 YP_004293685.1 CDS NAL212_0580 NC_015222.1 460175 461563 D TIGRFAM: DNA helicase, DnaB type; PFAM: DNA helicase, DnaB-like, C-terminal; DNA helicase, DnaB-like, N-terminal; KEGG: nmu:Nmul_A1947 replicative DNA helicase; SMART: ATPase, AAA+ type, core; replicative DNA helicase 460175..461563 Nitrosomonas sp. AL212 10297083 YP_004293686.1 CDS NAL212_0581 NC_015222.1 461689 462909 D KEGG: nmu:Nmul_A0578 hypothetical protein; hypothetical protein 461689..462909 Nitrosomonas sp. AL212 10297084 YP_004293687.1 CDS NAL212_0582 NC_015222.1 462975 464339 R KEGG: gca:Galf_0920 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD domain; metal dependent phosphohydrolase complement(462975..464339) Nitrosomonas sp. AL212 10297085 YP_004293688.1 CDS NAL212_0583 NC_015222.1 464504 467278 R KEGG: syp:SYNPCC7002_A2132 DNA methyltransferase; DNA methyltransferase complement(464504..467278) Nitrosomonas sp. AL212 10297086 YP_004293689.1 CDS NAL212_0585 NC_015222.1 467613 468590 D KEGG: reu:Reut_A1455 glutathione S-transferase; PFAM: Glutathione S-transferase, C-terminal; glutathione transferase 467613..468590 Nitrosomonas sp. AL212 10297088 YP_004293690.1 CDS NAL212_0587 NC_015222.1 469048 470022 D KEGG: neu:NE0101 glycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; phosphoglycerate dehydrogenase 469048..470022 Nitrosomonas sp. AL212 10297090 YP_004293691.1 CDS NAL212_0589 NC_015222.1 470146 470442 R PFAM: Transposase IS3/IS911family; KEGG: net:Neut_1813 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein complement(470146..470442) Nitrosomonas sp. AL212 10297092 YP_004293692.1 CDS NAL212_0590 NC_015222.1 470695 471495 R KEGG: btl:BALH_1430 hypothetical protein; hypothetical protein complement(470695..471495) Nitrosomonas sp. AL212 10297093 YP_004293693.1 CDS NAL212_0591 NC_015222.1 471552 472256 R KEGG: scl:sce8365 hypothetical protein; hypothetical protein complement(471552..472256) Nitrosomonas sp. AL212 10297094 YP_004293694.1 CDS NAL212_0592 NC_015222.1 472448 472750 R PFAM: Transposase IS3/IS911family; KEGG: bvi:Bcep1808_7228 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein complement(472448..472750) Nitrosomonas sp. AL212 10297095 YP_004293695.1 CDS NAL212_0593 NC_015222.1 473038 473943 D KEGG: tra:Trad_0294 Stf0 sulfotransferase; hypothetical protein 473038..473943 Nitrosomonas sp. AL212 10297096 YP_004293696.1 CDS NAL212_0594 NC_015222.1 474022 475242 D TIGRFAM: Peptidase M20D, amidohydrolase; KEGG: scl:sce2384 putative hydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation; amidohydrolase 474022..475242 Nitrosomonas sp. AL212 10297097 YP_004293697.1 CDS NAL212_0595 NC_015222.1 475353 475457 R hypothetical protein complement(475353..475457) Nitrosomonas sp. AL212 10297098 YP_004293698.1 CDS NAL212_0596 NC_015222.1 475704 475952 D KEGG: neu:NE1583 hypothetical protein; TIGRFAM: Prevent-host-death protein; PFAM: Prevent-host-death protein; prevent-host-death family protein 475704..475952 Nitrosomonas sp. AL212 10297099 YP_004293699.1 CDS NAL212_0597 NC_015222.1 475942 476238 D KEGG: neu:NE1584 hypothetical protein; TIGRFAM: Addiction module toxin, RelE/StbE; PFAM: Plasmid stabilisation system; RelE/StbE family addiction module toxin 475942..476238 Nitrosomonas sp. AL212 10297100 YP_004293700.1 CDS NAL212_0598 NC_015222.1 476403 476807 R PFAM: Transposase IS200-like; KEGG: app:CAP2UW1_3088 protein of unknown function DUF1568; transposase IS200-family protein complement(476403..476807) Nitrosomonas sp. AL212 10297101 YP_004293701.1 CDS NAL212_0600 NC_015222.1 477304 478326 D PFAM: Integrase, catalytic core; Resolvase, helix-turn-helix domain; KEGG: pst:PSPTO_B0040 ISPsy4, transposase; integrase catalytic region 477304..478326 Nitrosomonas sp. AL212 10297103 YP_004293702.1 CDS NAL212_0601 NC_015222.1 478323 479105 D KEGG: pst:PSPTO_B0039 transposase/IS protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; IstB domain-containing protein ATP-binding protein 478323..479105 Nitrosomonas sp. AL212 10297104 YP_004293703.1 CDS NAL212_0602 NC_015222.1 479165 479386 R KEGG: pph:Ppha_2372 addiction module component, TIGR02574 family; TIGRFAM: Addiction module component, CHP02574; PFAM: Addiction module component, CHP02574; addiction module protein complement(479165..479386) Nitrosomonas sp. AL212 10297105 YP_004293704.1 CDS NAL212_0603 NC_015222.1 479680 480213 R PFAM: Transposase IS200-like; KEGG: app:CAP2UW1_3088 protein of unknown function DUF1568; transposase IS200-family protein complement(479680..480213) Nitrosomonas sp. AL212 10297106 YP_004293705.1 CDS NAL212_0604 NC_015222.1 480325 480954 R KEGG: rsh:Rsph17029_2336 hypothetical protein; hypothetical protein complement(480325..480954) Nitrosomonas sp. AL212 10297107 YP_004293706.1 CDS NAL212_0605 NC_015222.1 481121 484585 R TIGRFAM: Transcription-repair coupling factor; PFAM: Transcription-repair-coupling factor domain; Transcription factor CarD; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; KEGG: nmu:Nmul_A0639 transcription-repair coupling factor; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; transcription-repair coupling factor complement(481121..484585) Nitrosomonas sp. AL212 10297108 YP_004293707.1 CDS NAL212_0606 NC_015222.1 485089 485922 D KEGG: dbr:Deba_0069 hypothetical protein; hypothetical protein 485089..485922 Nitrosomonas sp. AL212 10297109 YP_004293708.1 CDS NAL212_0607 NC_015222.1 486097 486696 D KEGG: tgr:Tgr7_0639 phosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1; phosphoglycerate mutase 486097..486696 Nitrosomonas sp. AL212 10297110 YP_004293709.1 CDS NAL212_0608 NC_015222.1 486781 487827 R PFAM: Secretion protein HlyD; KEGG: llo:LLO_0413 coiled-coil protein; secretion protein HlyD family protein complement(486781..487827) Nitrosomonas sp. AL212 10297111 YP_004293710.1 CDS NAL212_0609 NC_015222.1 487811 490006 R KEGG: dia:Dtpsy_0734 outer membrane protein-like protein; hypothetical protein complement(487811..490006) Nitrosomonas sp. AL212 10297112 YP_004293711.1 CDS NAL212_0610 NC_015222.1 489979 491304 R PFAM: Glycosyl transferase, family 2; KEGG: tai:Taci_0167 glycosyl transferase family 2; family 2 glycosyl transferase complement(489979..491304) Nitrosomonas sp. AL212 10297113 YP_004293712.1 CDS NAL212_0611 NC_015222.1 491308 492690 R KEGG: dia:Dtpsy_0736 hypothetical protein; hypothetical protein complement(491308..492690) Nitrosomonas sp. AL212 10297114 YP_004293713.1 CDS NAL212_0612 NC_015222.1 493259 493621 D KEGG: net:Neut_1958 hypothetical protein; hypothetical protein 493259..493621 Nitrosomonas sp. AL212 10297115 YP_004293714.1 CDS NAL212_0613 NC_015222.1 493766 494539 D PFAM: Enterobacterial TraT complement resistance; KEGG: net:Neut_1959 TraT complement resistance family protein; TraT complement resistance family protein 493766..494539 Nitrosomonas sp. AL212 10297116 YP_004293715.1 CDS NAL212_0614 NC_015222.1 494671 495018 D KEGG: net:Neut_1960 hypothetical protein; hypothetical protein 494671..495018 Nitrosomonas sp. AL212 10297117 YP_004293716.1 CDS NAL212_0615 NC_015222.1 495022 495699 R KEGG: eba:ebA2659 ExsB protein; TIGRFAM: Queuosine synthesis; PFAM: Queuosine synthesis; exsB protein complement(495022..495699) Nitrosomonas sp. AL212 10297118 YP_004293717.1 CDS NAL212_0616 NC_015222.1 495832 496491 R PFAM: Radical SAM; KEGG: nmu:Nmul_A2711 radical SAM family protein; Radical SAM domain-containing protein complement(495832..496491) Nitrosomonas sp. AL212 10297119 YP_004293718.1 CDS NAL212_0617 NC_015222.1 496582 497484 R TIGRFAM: Tol-Pal system, YbgF; KEGG: neu:NE0220 TPR repeat-containing protein; tol-pal system protein YbgF complement(496582..497484) Nitrosomonas sp. AL212 10297120 YP_004293719.1 CDS NAL212_0618 NC_015222.1 497487 498011 R KEGG: neu:NE0219 outer membrane protein; TIGRFAM: Peptidoglycan-associated lipoprotein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; peptidoglycan-associated lipoprotein complement(497487..498011) Nitrosomonas sp. AL212 10297121 YP_004293720.1 CDS NAL212_0619 NC_015222.1 498045 499343 R KEGG: nmu:Nmul_A2714 translocation protein TolB; TIGRFAM: Tol-Pal system beta propeller repeat-containing protein, TolB; PFAM: TolB, N-terminal; WD40-like Beta Propeller; Tol-Pal system beta propeller repeat-containing protein TolB complement(498045..499343) Nitrosomonas sp. AL212 10297122 YP_004293721.1 CDS NAL212_0620 NC_015222.1 499399 500343 R KEGG: nmu:Nmul_A2715 TonB-like; TIGRFAM: Tol-Pal system, TolA; PFAM: Tol-Pal system, TolA; protein TolA complement(499399..500343) Nitrosomonas sp. AL212 10297123 YP_004293722.1 CDS NAL212_0621 NC_015222.1 500354 500767 R KEGG: neu:NE0216 biopolymer transport protein ExbD/TolR; TIGRFAM: Biopolymer transport, TolR; PFAM: Biopolymer transport protein ExbD/TolR; protein TolR complement(500354..500767) Nitrosomonas sp. AL212 10297124 YP_004293723.1 CDS NAL212_0622 NC_015222.1 500787 501467 R KEGG: net:Neut_0286 MotA/TolQ/ExbB proton channel; TIGRFAM: Tol-Pal system, TolQ; PFAM: MotA/TolQ/ExbB proton channel; protein TolQ complement(500787..501467) Nitrosomonas sp. AL212 10297125 YP_004293724.1 CDS NAL212_0623 NC_015222.1 501464 501874 R KEGG: neu:NE0214 4-hydroxybenzoyl-CoA thioesterase family protein; TIGRFAM: Tol-Pal system-associated acyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase; PFAM: Thioesterase superfamily; tol-pal system-associated acyl-CoA thioesterase complement(501464..501874) Nitrosomonas sp. AL212 10297126 YP_004293725.1 CDS NAL212_0624 NC_015222.1 501897 502850 R TIGRFAM: Cysteine synthase K/M; Cysteine synthase B; KEGG: nmu:Nmul_A2221 cysteine synthase B; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; cysteine synthase complement(501897..502850) Nitrosomonas sp. AL212 10297127 YP_004293726.1 CDS NAL212_0625 NC_015222.1 502927 503214 R TIGRFAM: Competence protein ComEA, helix-hairpin-helix domain; PFAM: Helix-hairpin-helix motif; KEGG: nmu:Nmul_A2222 competence protein ComEA helix-hairpin-helix region; SMART: Helix-hairpin-helix DNA-binding motif, class 1; competence protein ComEA complement(502927..503214) Nitrosomonas sp. AL212 10297128 YP_004293727.1 CDS NAL212_0626 NC_015222.1 503408 505060 R PFAM: Biopterin transport-related protein BT1; KEGG: nmu:Nmul_A0956 hypothetical protein; biopterin transport-like protein BT1 complement(503408..505060) Nitrosomonas sp. AL212 10297129 YP_004293728.1 CDS NAL212_0627 NC_015222.1 505094 506233 R PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; KEGG: neu:NE1508 HtrA-like serine protease signal peptide protein; SMART: PDZ/DHR/GLGF; HtrA2 peptidase complement(505094..506233) Nitrosomonas sp. AL212 10297130 YP_004293729.1 CDS NAL212_0628 NC_015222.1 506312 507058 D KEGG: neu:NE1509 hypothetical protein; TIGRFAM: NGG1p interacting factor 3, NIF3; PFAM: NGG1p interacting factor 3, NIF3; NGG1p interacting factor 3 protein, NIF3 506312..507058 Nitrosomonas sp. AL212 10297131 YP_004293730.1 CDS NAL212_0629 NC_015222.1 507277 508479 D KEGG: nmu:Nmul_A2446 MltA; PFAM: Lytic transglycosylase MltA; 3D; SMART: Lytic transglycosylase MltA; MltA domain-containing protein 507277..508479 Nitrosomonas sp. AL212 10297132 YP_004293731.1 CDS NAL212_0630 NC_015222.1 508525 509247 R PFAM: Disulphide bond isomerase, DsbC/G, N-terminal; KEGG: neu:NE1511 hypothetical protein; disulfide bond isomerase DsbC/G complement(508525..509247) Nitrosomonas sp. AL212 10297133 YP_004293732.1 CDS NAL212_0631 NC_015222.1 509273 510442 R KEGG: nmu:Nmul_A2444 ubiquinone biosynthesis hydroxylase family protein; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6; PFAM: Monooxygenase, FAD-binding; UbiH/UbiF/VisC/COQ6 family Ubiquinone biosynthesis hydroxylase complement(509273..510442) Nitrosomonas sp. AL212 10297134 YP_004293733.1 CDS NAL212_0632 NC_015222.1 511071 512048 D TIGRFAM: Cysteine synthase K/M; Cysteine synthase A; KEGG: mmb:Mmol_0796 cysteine synthase A; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; cysteine synthase 511071..512048 Nitrosomonas sp. AL212 10297136 YP_004293734.1 CDS NAL212_0633 NC_015222.1 512096 512998 D KEGG: nmu:Nmul_A2073 serine O-acetyltransferase; Serine O-acetyltransferase 512096..512998 Nitrosomonas sp. AL212 10297137 YP_004293735.1 CDS NAL212_0634 NC_015222.1 513024 513431 D PFAM: Domain of unknown function DUF336; KEGG: nmu:Nmul_A0738 hypothetical protein; hypothetical protein 513024..513431 Nitrosomonas sp. AL212 10297138 YP_004293736.1 CDS NAL212_0635 NC_015222.1 513589 515205 D KEGG: amr:AM1_6172 IS5 family transposase; IS5 family transposase 513589..515205 Nitrosomonas sp. AL212 10297139 YP_004293737.1 CDS NAL212_0636 NC_015222.1 515281 515775 R PFAM: Protein of unknown function DUF2165, transmembrane; KEGG: hch:HCH_05440 small integral membrane protein; hypothetical protein complement(515281..515775) Nitrosomonas sp. AL212 10297140 YP_004293738.1 CDS NAL212_0637 NC_015222.1 515875 516732 R KEGG: nmu:Nmul_A0990 import inner membrane translocase, subunit Tim44; PFAM: Membrane transporter, Tim44-related/Ribosomal protein L45; SMART: Membrane transporter, Tim44-related/Ribosomal protein L45; import inner membrane translocase subunit Tim44 complement(515875..516732) Nitrosomonas sp. AL212 10297141 YP_004293739.1 CDS NAL212_0638 NC_015222.1 516864 517292 R manually curated; KEGG: nmu:Nmul_A1395 hypothetical protein; hypothetical protein complement(516864..517292) Nitrosomonas sp. AL212 10297142 YP_004293740.1 CDS NAL212_0639 NC_015222.1 517344 517907 R KEGG: ppw:PputW619_0012 hypothetical protein; hypothetical protein complement(517344..517907) Nitrosomonas sp. AL212 10297143 YP_004293741.1 CDS NAL212_0640 NC_015222.1 518178 519107 R PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: nmu:Nmul_A1145 transcriptional regulator CysB-like protein; LysR family transcriptional regulator complement(518178..519107) Nitrosomonas sp. AL212 10297144 YP_004293742.1 CDS NAL212_0641 NC_015222.1 519541 519759 D KEGG: gca:Galf_1982 hypothetical protein; hypothetical protein 519541..519759 Nitrosomonas sp. AL212 10297145 YP_004293743.1 CDS NAL212_0642 NC_015222.1 519813 521555 D KEGG: gca:Galf_1981 nitrite and sulphite reductase 4Fe-4S region; PFAM: Nitrite/sulphite reductase 4Fe-4S domain; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like; ferredoxin--nitrite reductase 519813..521555 Nitrosomonas sp. AL212 10297146 YP_004293744.1 CDS NAL212_0643 NC_015222.1 521563 522096 D PFAM: Uncharacterised conserved protein UCP030820; KEGG: hse:Hsero_3100 hypothetical protein; hypothetical protein 521563..522096 Nitrosomonas sp. AL212 10297147 YP_004293745.1 CDS NAL212_0644 NC_015222.1 522089 522787 D TIGRFAM: Adenylylsulphate reductase, thioredoxin dependent; Phosphoadenosine phosphosulphate reductase CysH-type; KEGG: slt:Slit_1033 adenylylsulfate reductase, thioredoxin dependent; PFAM: Phosphoadenosine phosphosulphate reductase; adenylylsulfate reductase 522089..522787 Nitrosomonas sp. AL212 10297148 YP_004293746.1 CDS NAL212_0646 NC_015222.1 523397 523801 D PFAM: Signal transduction response regulator, receiver domain; KEGG: slt:Slit_1160 multi-sensor hybrid histidine kinase; SMART: Signal transduction response regulator, receiver domain; response regulator receiver protein 523397..523801 Nitrosomonas sp. AL212 10297150 YP_004293747.1 CDS NAL212_0647 NC_015222.1 523915 527454 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: nmu:Nmul_A1150 hypothetical protein; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 523915..527454 Nitrosomonas sp. AL212 10297151 YP_004293748.1 CDS NAL212_0648 NC_015222.1 527461 527847 D KEGG: rcu:RCOM_1880270 two-component sensor protein histidine protein kinase, putative; PFAM: Signal transduction histidine kinase, phosphotransfer (Hpt) domain; SMART: Signal transduction histidine kinase, phosphotransfer (Hpt) domain; Hpt domain-containing protein 527461..527847 Nitrosomonas sp. AL212 10297152 YP_004293749.1 CDS NAL212_0649 NC_015222.1 528154 529281 D KEGG: nmu:Nmul_A1151 NAD(P)(+) transhydrogenase (AB-specific); PFAM: Alanine dehydrogenase/PNT, C-terminal; Alanine dehydrogenase/PNT, N-terminal; NAD(P)(+) transhydrogenase 528154..529281 Nitrosomonas sp. AL212 10297153 YP_004293750.1 CDS NAL212_0650 NC_015222.1 529360 529668 D KEGG: nmu:Nmul_A1152 transmembrane NAD(P) transhydrogenase (alpha subunit part 2); transmembrane NAD(P) transhydrogenase subunit alpha 529360..529668 Nitrosomonas sp. AL212 10297154 YP_004293751.1 CDS NAL212_0651 NC_015222.1 529668 531050 D KEGG: neu:NE0861 NAD(P) transhydrogenase beta subunit; PFAM: NAD(P) transhydrogenase, beta subunit; NAD(P)(+) transhydrogenase 529668..531050 Nitrosomonas sp. AL212 10297155 YP_004293752.1 CDS NAL212_0652 NC_015222.1 531050 531154 D hypothetical protein 531050..531154 Nitrosomonas sp. AL212 10297156 YP_004293753.1 CDS NAL212_0653 NC_015222.1 531157 532668 R KEGG: net:Neut_1199 diguanylate phosphodiesterase; PFAM: Diguanylate phosphodiesterase, EAL domain; PAS fold-4; SMART: Diguanylate phosphodiesterase, EAL domain; diguanylate phosphodiesterase complement(531157..532668) Nitrosomonas sp. AL212 10297157 YP_004293754.1 CDS NAL212_0654 NC_015222.1 532742 533776 R PFAM: Bisphosphoglycerate-independent phosphoglycerate mutase; KEGG: nmu:Nmul_A2416 hypothetical protein; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase complement(532742..533776) Nitrosomonas sp. AL212 10297158 YP_004293755.1 CDS NAL212_0655 NC_015222.1 533990 535240 D TIGRFAM: Isocitrate dehydrogenase NADP-dependent, prokaryotic; KEGG: nmu:Nmul_A2245 isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate/isopropylmalate dehydrogenase; isocitrate dehydrogenase 533990..535240 Nitrosomonas sp. AL212 10297159 YP_004293756.1 CDS NAL212_0656 NC_015222.1 535412 535615 R KEGG: net:Neut_2046 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein complement(535412..535615) Nitrosomonas sp. AL212 10297160 YP_004293757.1 CDS NAL212_0657 NC_015222.1 536529 536738 D hypothetical protein 536529..536738 Nitrosomonas sp. AL212 10297161 YP_004293758.1 CDS NAL212_0658 NC_015222.1 536982 537290 D PFAM: Adaptor protein ClpS, core; KEGG: nmu:Nmul_A2247 ATP-dependent Clp protease adaptor protein ClpS; ATP-dependent Clp protease adaptor protein ClpS 536982..537290 Nitrosomonas sp. AL212 10297162 YP_004293759.1 CDS NAL212_0659 NC_015222.1 537292 539547 D TIGRFAM: ATP-dependent Clp protease ATP-binding subunit ClpA; PFAM: ATPase, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; KEGG: nmu:Nmul_A2248 ATPase with chaperone activity; SMART: ATPase, AAA+ type, core; ATP-dependent Clp protease ATP-binding protein ClpA 537292..539547 Nitrosomonas sp. AL212 10297163 YP_004293760.1 CDS NAL212_0660 NC_015222.1 539885 543043 R KEGG: nmu:Nmul_A2108 heavy metal efflux pump CzcA; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein; CzcA family heavy metal efflux pump complement(539885..543043) Nitrosomonas sp. AL212 10297164 YP_004293761.1 CDS NAL212_0661 NC_015222.1 543076 544575 R KEGG: nmu:Nmul_A2107 secretion protein HlyD; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit complement(543076..544575) Nitrosomonas sp. AL212 10297165 YP_004293762.1 CDS NAL212_0662 NC_015222.1 544579 546006 R PFAM: Outer membrane efflux protein; KEGG: nmu:Nmul_A2106 outer membrane efflux protein; outer membrane efflux protein complement(544579..546006) Nitrosomonas sp. AL212 10297166 YP_004293763.1 CDS NAL212_0663 NC_015222.1 546134 546508 R KEGG: nmu:Nmul_A2105 hypothetical protein; hypothetical protein complement(546134..546508) Nitrosomonas sp. AL212 10297167 YP_004293764.1 CDS NAL212_0664 NC_015222.1 546619 547218 R TIGRFAM: Maf-like protein; HAMAP: Maf-like protein; KEGG: nmu:Nmul_A1068 maf protein; PFAM: Maf-like protein; Septum formation protein Maf complement(546619..547218) Nitrosomonas sp. AL212 10297168 YP_004293765.1 CDS NAL212_0665 NC_015222.1 547275 547790 D PFAM: Protein of unknown function DUF177; KEGG: net:Neut_0473 hypothetical protein; hypothetical protein 547275..547790 Nitrosomonas sp. AL212 10297169 YP_004293766.1 CDS NAL212_0666 NC_015222.1 547809 547988 D KEGG: neu:NE1644 50S ribosomal protein L32; TIGRFAM: Ribosomal protein L32p; PFAM: Ribosomal protein L32p; 50S ribosomal protein L32 547809..547988 Nitrosomonas sp. AL212 10297170 YP_004293767.1 CDS NAL212_0667 NC_015222.1 548050 549090 D TIGRFAM: Phospholipid biosynthesis protein, PlsX-like; HAMAP: Phospholipid biosynthesis protein, PlsX-like; KEGG: nmu:Nmul_A1071 putative glycerol-3-phosphate acyltransferase PlsX; PFAM: Fatty acid synthesis PlsX protein; phosphate acyltransferase 548050..549090 Nitrosomonas sp. AL212 10297171 YP_004293768.1 CDS NAL212_0668 NC_015222.1 549087 550046 D TIGRFAM: Beta-ketoacyl-acyl carrier protein synthase III (FabH); KEGG: nmu:Nmul_A1072 3-oxoacyl-(acyl carrier protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-oxoacyl-ACP synthase III 549087..550046 Nitrosomonas sp. AL212 10297172 YP_004293769.1 CDS NAL212_0669 NC_015222.1 550049 550993 D KEGG: nmu:Nmul_A1073 malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; manually curated; TIGRFAM: Malonyl CoA-acyl carrier protein transacylase; SMART: Polyketide synthase, acyl transferase domain; malonyl CoA-acyl carrier protein transacylase 550049..550993 Nitrosomonas sp. AL212 10297173 YP_004293770.1 CDS NAL212_0670 NC_015222.1 551028 551783 D KEGG: nmu:Nmul_A1074 3-oxoacyl-(acyl-carrier-protein) reductase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR; Mediator complex, subunit Med9; 3-oxoacyl-ACP reductase 551028..551783 Nitrosomonas sp. AL212 10297174 YP_004293771.1 CDS NAL212_0671 NC_015222.1 551938 552180 D KEGG: net:Neut_0467 acyl carrier protein; TIGRFAM: Acyl carrier protein (ACP); PFAM: Phosphopantetheine-binding; acyl carrier protein 551938..552180 Nitrosomonas sp. AL212 10297175 YP_004293772.1 CDS NAL212_0672 NC_015222.1 552216 553457 D SMART: Polyketide synthase, beta-ketoacyl synthase domain; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; KEGG: neu:NE1650 beta-ketoacyl synthase; PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal; 3-oxoacyl-ACP synthase II 552216..553457 Nitrosomonas sp. AL212 10297176 YP_004293773.1 CDS NAL212_0673 NC_015222.1 553474 554469 D KEGG: nmu:Nmul_A1077 aminodeoxychorismate lyase; TIGRFAM: Uncharacterised protein family UPF0755; PFAM: Uncharacterised protein family UPF0755; aminodeoxychorismate lyase 553474..554469 Nitrosomonas sp. AL212 10297177 YP_004293774.1 CDS NAL212_0674 NC_015222.1 554515 557097 D KEGG: nmu:Nmul_A1764 dolichyl-phosphate beta-D-mannosyltransferase; PFAM: Glycosyl transferase, family 2; GtrA-like protein; dolichyl-phosphate beta-D-mannosyltransferase 554515..557097 Nitrosomonas sp. AL212 10297178 YP_004293775.1 CDS NAL212_0675 NC_015222.1 557214 558248 R PFAM: O-methyltransferase, family 2; KEGG: nhl:Nhal_1752 O-methyltransferase family 2; O-methyltransferase family 2 complement(557214..558248) Nitrosomonas sp. AL212 10297179 YP_004293776.1 CDS NAL212_0676 NC_015222.1 558315 558818 R PFAM: Polyketide cyclase/dehydrase; KEGG: nhl:Nhal_1751 hypothetical protein; polyketide cyclase/dehydrase complement(558315..558818) Nitrosomonas sp. AL212 10297180 YP_004293777.1 CDS NAL212_0677 NC_015222.1 558994 560532 R manually curated; TIGRFAM: Flagellin assembly, membrane protein MviN; KEGG: nmu:Nmul_A1036 integral membrane protein MviN; PFAM: Flagellin assembly, membrane protein MviN; integral membrane protein MviN complement(558994..560532) Nitrosomonas sp. AL212 10297181 YP_004293778.1 CDS NAL212_0678 NC_015222.1 560638 561363 R KEGG: ptm:GSPATT00024162001 hypothetical protein; hypothetical protein complement(560638..561363) Nitrosomonas sp. AL212 10297182 YP_004293779.1 CDS NAL212_0679 NC_015222.1 561530 561844 D KEGG: pmy:Pmen_1553 hypothetical protein; hypothetical protein 561530..561844 Nitrosomonas sp. AL212 10297183 YP_004293780.1 CDS NAL212_0680 NC_015222.1 561855 562712 D PFAM: Uncharacterised protein family UPF0276; KEGG: nhl:Nhal_2721 protein of unknown function DUF692; hypothetical protein 561855..562712 Nitrosomonas sp. AL212 10297184 YP_004293781.1 CDS NAL212_0682 NC_015222.1 563582 565537 R TIGRFAM: Diguanylate cyclase, predicted; PFAM: Metal-dependent hydrolase HDOD; Diguanylate cyclase, predicted; Signal transduction response regulator, receiver domain; KEGG: tmz:Tmz1t_3851 response regulator receiver modulated diguanylate cyclase; SMART: Diguanylate cyclase, predicted; Signal transduction response regulator, receiver domain; response regulator receiver modulated diguanylate cyclase complement(563582..565537) Nitrosomonas sp. AL212 10297186 YP_004293782.1 CDS NAL212_0683 NC_015222.1 565736 568486 R KEGG: tmz:Tmz1t_3847 Hpt sensor hybrid histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction response regulator, receiver domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; HAMP linker domain; multi-sensor hybrid histidine kinase complement(565736..568486) Nitrosomonas sp. AL212 10297187 YP_004293783.1 CDS NAL212_0684 NC_015222.1 568486 569142 R KEGG: tmz:Tmz1t_3846 hypothetical protein; hypothetical protein complement(568486..569142) Nitrosomonas sp. AL212 10297188 YP_004293784.1 CDS NAL212_0685 NC_015222.1 569154 571088 R KEGG: tbd:Tbd_1266 TonB-dependent iron complex outermembrane receptor protein; manually curated; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; TonB-dependent receptor complement(569154..571088) Nitrosomonas sp. AL212 10297189 YP_004293785.1 CDS NAL212_0686 NC_015222.1 571341 573197 R PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: neu:NE0376 ABC transporter permease/ATP-binding protein; SMART: ATPase, AAA+ type, core; xenobiotic-transporting ATPase complement(571341..573197) Nitrosomonas sp. AL212 10297190 YP_004293786.1 CDS NAL212_0687 NC_015222.1 573204 574445 R KEGG: noc:Noc_0536 pheromone shutdown protein; TIGRFAM: Pheromone shutdown, TraB; PFAM: Pheromone shutdown-related, TraB; TraB family protein complement(573204..574445) Nitrosomonas sp. AL212 10297191 YP_004293787.1 CDS NAL212_0688 NC_015222.1 574484 575128 D KEGG: sno:Snov_2952 hypothetical protein; hypothetical protein 574484..575128 Nitrosomonas sp. AL212 10297192 YP_004293788.1 CDS NAL212_0689 NC_015222.1 575636 576172 D KEGG: neu:NE2056 hypothetical protein; manually curated; PFAM: YkuD domain; ErfK/YbiS/YcfS/YnhG family protein 575636..576172 Nitrosomonas sp. AL212 10297193 YP_004293789.1 CDS NAL212_0690 NC_015222.1 576443 576733 D KEGG: neu:NE1907 hypothetical protein; hypothetical protein 576443..576733 Nitrosomonas sp. AL212 10297194 YP_004293790.1 CDS NAL212_0691 NC_015222.1 576830 577825 R PFAM: YkuD domain; KEGG: neu:NE1659 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein complement(576830..577825) Nitrosomonas sp. AL212 10297195 YP_004293791.1 CDS NAL212_0692 NC_015222.1 578417 579622 D PFAM: Porin, Gram-negative type; KEGG: nmu:Nmul_A2561 porin; porin 578417..579622 Nitrosomonas sp. AL212 10297196 YP_004293792.1 CDS NAL212_0693 NC_015222.1 579738 580184 D KEGG: neu:NE0369 hypothetical protein; hypothetical protein 579738..580184 Nitrosomonas sp. AL212 10297197 YP_004293793.1 CDS NAL212_0694 NC_015222.1 580274 580771 D PFAM: Protein of unknown function DUF2806; KEGG: nmu:Nmul_A0795 hypothetical protein; hypothetical protein 580274..580771 Nitrosomonas sp. AL212 10297198 YP_004293794.1 CDS NAL212_0695 NC_015222.1 580755 582026 R KEGG: net:Neut_2458 hydroxypyruvate reductase; PFAM: MOFRL domain; hydroxypyruvate reductase complement(580755..582026) Nitrosomonas sp. AL212 10297199 YP_004293795.1 CDS NAL212_0696 NC_015222.1 582023 584842 R KEGG: nmu:Nmul_A2229 excinuclease ABC, A subunit; TIGRFAM: Excinuclease ABC, A subunit; PFAM: ABC transporter-like; excinuclease ABC subunit A complement(582023..584842) Nitrosomonas sp. AL212 10297200 YP_004293796.1 CDS NAL212_0697 NC_015222.1 584909 586291 D PFAM: Major facilitator superfamily MFS-1; KEGG: net:Neut_2460 major facilitator transporter; major facilitator superfamily protein 584909..586291 Nitrosomonas sp. AL212 10297201 YP_004293797.1 CDS NAL212_0698 NC_015222.1 586292 586744 D KEGG: nmu:Nmul_A2227 single-strand binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding; single-strand binding protein 586292..586744 Nitrosomonas sp. AL212 10297202 YP_004293798.1 CDS NAL212_0699 NC_015222.1 586880 587086 R hypothetical protein complement(586880..587086) Nitrosomonas sp. AL212 10297203 YP_004293799.1 CDS NAL212_0700 NC_015222.1 587264 588403 R KEGG: app:CAP2UW1_1594 pyridine nucleotide-disulfide oxidoreductase family protein; TIGRFAM: Pyridine nucleotide-disulphide oxidoreductase family protein, N-terminal; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; Pyridine nucleotide-disulfide oxidoreductase family protein complement(587264..588403) Nitrosomonas sp. AL212 10297204 YP_004293800.1 CDS NAL212_0701 NC_015222.1 588619 589131 D PFAM: Peptidoglycan binding-like; KEGG: neu:NE2133 peptidoglycan binding domain-containing protein; peptidoglycan-binding domain 1 protein 588619..589131 Nitrosomonas sp. AL212 10297205 YP_004293801.1 CDS NAL212_0702 NC_015222.1 589731 590849 D TIGRFAM: Hopanoid biosynthesis associated radical SAM protein HpnH; PFAM: Domain of unknown function DUF3463; Radical SAM; KEGG: nmu:Nmul_A2560 radical SAM family protein; SMART: Elongator protein 3/MiaB/NifB; hopanoid biosynthesis associated radical SAM protein HpnH 589731..590849 Nitrosomonas sp. AL212 10297206 YP_004293802.1 CDS NAL212_0703 NC_015222.1 590897 592036 D PFAM: Glycosyl transferase, family 2; KEGG: neu:NE0330 glycosyl transferase family protein; family 2 glycosyl transferase 590897..592036 Nitrosomonas sp. AL212 10297207 YP_004293803.1 CDS NAL212_0704 NC_015222.1 592065 592649 D KEGG: neu:NE0331 putative periplasmic transport protein; TIGRFAM: Hopanoid biosynthesis-associated membrane protein HpnM; PFAM: Toluene tolerance Ttg2; hopanoid biosynthesis associated membrane protein HpnM 592065..592649 Nitrosomonas sp. AL212 10297208 YP_004293804.1 CDS NAL212_0705 NC_015222.1 592688 595354 D TIGRFAM: Hopanoid biosynthesis associated RND transporter-like protein HpnN; KEGG: nmu:Nmul_A2558 hypothetical protein; hopanoid biosynthesis associated RND transporter like protein HpnN 592688..595354 Nitrosomonas sp. AL212 10297209 YP_004293805.1 CDS NAL212_0706 NC_015222.1 595362 596633 R PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; KEGG: nmu:Nmul_A2620 Fmu (Sun) NOL1/Nop2p; Fmu (Sun) domain-containing protein complement(595362..596633) Nitrosomonas sp. AL212 10297210 YP_004293806.1 CDS NAL212_0707 NC_015222.1 596674 597396 R PFAM: Protein of unknown function DUF3108; KEGG: neu:NE0086 hypothetical protein; hypothetical protein complement(596674..597396) Nitrosomonas sp. AL212 10297211 YP_004293807.1 CDS NAL212_0708 NC_015222.1 597393 598031 R TIGRFAM: Phosphoribosylglycinamide formyltransferase; KEGG: nmu:Nmul_A2618 phosphoribosylglycinamide formyltransferase; PFAM: Formyl transferase, N-terminal; phosphoribosylglycinamide formyltransferase complement(597393..598031) Nitrosomonas sp. AL212 10297212 YP_004293808.1 CDS NAL212_0709 NC_015222.1 598051 599109 R TIGRFAM: Phosphoribosylformylglycinamidine cyclo-ligase; KEGG: nmu:Nmul_A2617 phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase-related protein, C-terminal; AIR synthase-related protein; phosphoribosylformylglycinamidine cyclo-ligase complement(598051..599109) Nitrosomonas sp. AL212 10297213 YP_004293809.1 CDS NAL212_0710 NC_015222.1 599680 600894 D PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: sde:Sde_0100 deacylase-like; succinylglutamate desuccinylase/aspartoacylase 599680..600894 Nitrosomonas sp. AL212 10297214 YP_004293810.1 CDS NAL212_0711 NC_015222.1 601283 601447 D hypothetical protein 601283..601447 Nitrosomonas sp. AL212 10297215 YP_004293811.1 CDS NAL212_0712 NC_015222.1 601401 602789 D KEGG: mca:MCA0809 acetylornithine aminotransferase, putative; PFAM: Aminotransferase class-III; Acetylornithine transaminase 601401..602789 Nitrosomonas sp. AL212 10297216 YP_004293812.1 CDS NAL212_0713 NC_015222.1 602800 603864 D PFAM: Uncharacterised protein family UPF0118; KEGG: neu:NE0089 hypothetical protein; hypothetical protein 602800..603864 Nitrosomonas sp. AL212 10297217 YP_004293813.1 CDS NAL212_0714 NC_015222.1 603900 604577 D KEGG: nmu:Nmul_A2616 DnaA regulatory inactivator Hda; TIGRFAM: Chromosomal replication control, regulator Hda; PFAM: Chromosomal replication control, initiator (DnaA)/regulator (Hda); DnaA regulatory inactivator Hda 603900..604577 Nitrosomonas sp. AL212 10297218 YP_004293814.1 CDS NAL212_0715 NC_015222.1 604574 605236 D TIGRFAM: HAD-superfamily hydrolase, subfamily IB, PSPase-like, bacterial; HAD-superfamily hydrolase, subfamily IB, PSPase-like; KEGG: neu:NE0097 HAD family hydrolase; HAD-superfamily hydrolase 604574..605236 Nitrosomonas sp. AL212 10297219 YP_004293815.1 CDS NAL212_0716 NC_015222.1 605233 606738 R TIGRFAM: Lysyl-tRNA synthetase, class II; KEGG: neu:NE2355 lysyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; lysyl-tRNA synthetase complement(605233..606738) Nitrosomonas sp. AL212 10297220 YP_004293816.1 CDS NAL212_0717 NC_015222.1 607124 607801 D KEGG: sus:Acid_1755 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; two component transcriptional regulator, LuxR family 607124..607801 Nitrosomonas sp. AL212 10297221 YP_004293817.1 CDS NAL212_0718 NC_015222.1 608424 610268 D KEGG: nde:NIDE3511 putative multicopper oxidase, type 2; PFAM: Multicopper oxidase, type 2; bilirubin oxidase 608424..610268 Nitrosomonas sp. AL212 10297222 YP_004293818.1 CDS NAL212_0719 NC_015222.1 610290 610979 D PFAM: Copper chaperone SCO1/SenC; KEGG: pfo:Pfl01_2002 electron transport protein SCO1/SenC; electron transport protein SCO1/SenC 610290..610979 Nitrosomonas sp. AL212 10297223 YP_004293819.1 CDS NAL212_0720 NC_015222.1 611130 612509 D KEGG: lch:Lcho_3668 fibronectin type III domain-containing protein; fibronectin type III domain-containing protein 611130..612509 Nitrosomonas sp. AL212 10297224 YP_004293820.1 CDS NAL212_0721 NC_015222.1 612629 613864 R SMART: Diguanylate cyclase, predicted; HAMP linker domain; GAF; TIGRFAM: Diguanylate cyclase, predicted; KEGG: tau:Tola_1191 diguanylate cyclase with GAF sensor; PFAM: Diguanylate cyclase, predicted; HAMP linker domain; GAF; GAF sensor-containing diguanylate cyclase complement(612629..613864) Nitrosomonas sp. AL212 10297225 YP_004293821.1 CDS NAL212_0722 NC_015222.1 614073 614525 D PFAM: Phosphotransferase system, fructose subfamily IIA component; KEGG: mmb:Mmol_2160 PTS system fructose subfamily IIA component; PTS system fructose subfamily transporter subunit IIA 614073..614525 Nitrosomonas sp. AL212 10297226 YP_004293822.1 CDS NAL212_0723 NC_015222.1 614515 614784 D KEGG: nmu:Nmul_A0219 HPrNtr; TIGRFAM: Phosphotransferase system, phosphocarrier HPr protein; PFAM: Phosphotransferase system, phosphocarrier HPr protein; phosphotransferase system, phosphocarrier protein HPr 614515..614784 Nitrosomonas sp. AL212 10297227 YP_004293823.1 CDS NAL212_0724 NC_015222.1 614781 616508 D TIGRFAM: Phosphoenolpyruvate-protein phosphotransferase; KEGG: nmu:Nmul_A0220 phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilising enzyme; Phosphotransferase system, PEP-utilising enzyme, N-terminal; PEP-utilising enzyme, mobile domain; phosphoenolpyruvate-protein phosphotransferase 614781..616508 Nitrosomonas sp. AL212 10297228 YP_004293824.1 CDS NAL212_0725 NC_015222.1 616711 617838 D TIGRFAM: Homoserine acetyltransferase; KEGG: nmu:Nmul_A0221 homoserine O-acetyltransferase; PFAM: Alpha/beta hydrolase fold-1; homoserine O-acetyltransferase 616711..617838 Nitrosomonas sp. AL212 10297229 YP_004293825.1 CDS NAL212_0726 NC_015222.1 617847 618482 D KEGG: nmu:Nmul_A0222 methionine biosynthesis MetW; TIGRFAM: Methionine biosynthesis MetW; PFAM: Methionine biosynthesis MetW; methionine biosynthesis protein MetW 617847..618482 Nitrosomonas sp. AL212 10297230 YP_004293826.1 CDS NAL212_0727 NC_015222.1 618488 619054 D PFAM: Plasmid pRiA4b ORF-3-like; KEGG: kol:Kole_0088 plasmid pRiA4b ORF-3 family protein; plasmid pRiA4b ORF-3 family protein 618488..619054 Nitrosomonas sp. AL212 10297231 YP_004293827.1 CDS NAL212_0728 NC_015222.1 619098 619904 R PFAM: Protein of unknown function DUF455; KEGG: nhl:Nhal_2779 protein of unknown function DUF455; hypothetical protein complement(619098..619904) Nitrosomonas sp. AL212 10297232 YP_004293828.1 CDS NAL212_0729 NC_015222.1 620011 620433 D PFAM: Thioesterase superfamily; KEGG: nmu:Nmul_A0096 thioesterase superfamily protein; thioesterase superfamily protein 620011..620433 Nitrosomonas sp. AL212 10297233 YP_004293829.1 CDS NAL212_0730 NC_015222.1 620559 621479 D PFAM: Sulfotransferase domain; KEGG: hoh:Hoch_5094 sulfotransferase; sulfotransferase 620559..621479 Nitrosomonas sp. AL212 10297234 YP_004293830.1 CDS NAL212_0731 NC_015222.1 621852 621980 D hypothetical protein 621852..621980 Nitrosomonas sp. AL212 10297235 YP_004293831.1 CDS NAL212_0732 NC_015222.1 622235 623047 R KEGG: syf:Synpcc7942_0648 hypothetical protein; hypothetical protein complement(622235..623047) Nitrosomonas sp. AL212 10297236 YP_004293832.1 CDS NAL212_0733 NC_015222.1 623422 624102 R TIGRFAM: 6-phosphogluconolactonase, DevB-type; KEGG: net:Neut_0430 6-phosphogluconolactonase; 6-phosphogluconolactonase complement(623422..624102) Nitrosomonas sp. AL212 10297237 YP_004293833.1 CDS NAL212_0734 NC_015222.1 624099 624755 R PFAM: Haloacid dehalogenase-like hydrolase; KEGG: nmu:Nmul_A0426 haloacid dehalogenase-like hydrolase; haloacid dehalogenase domain-containing protein hydrolase complement(624099..624755) Nitrosomonas sp. AL212 10297238 YP_004293834.1 CDS NAL212_0735 NC_015222.1 624758 625696 R PFAM: NAD-dependent epimerase/dehydratase; KEGG: nmu:Nmul_A0427 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(624758..625696) Nitrosomonas sp. AL212 10297239 YP_004293835.1 CDS NAL212_0736 NC_015222.1 625696 626625 R KEGG: net:Neut_0433 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; phosphoglycerate dehydrogenase complement(625696..626625) Nitrosomonas sp. AL212 10297240 YP_004293836.1 CDS NAL212_0737 NC_015222.1 626622 627392 R KEGG: net:Neut_0434 2-dehydro-3-deoxyglucarate aldolase; PFAM: Aldehyde-lyase domain; 4-hydroxy-2-oxovalerate aldolase complement(626622..627392) Nitrosomonas sp. AL212 10297241 YP_004293837.1 CDS NAL212_0738 NC_015222.1 627401 628153 R KEGG: neu:NE1686 3-deoxy-manno-octulosonate cytidylyltransferase; PFAM: Acylneuraminate cytidylyltransferase; 3-deoxy-manno-octulosonate cytidylyltransferase complement(627401..628153) Nitrosomonas sp. AL212 10297242 YP_004293838.1 CDS NAL212_0739 NC_015222.1 628418 629683 D KEGG: nmu:Nmul_A0431 hypothetical protein; hypothetical protein 628418..629683 Nitrosomonas sp. AL212 10297243 YP_004293839.1 CDS NAL212_0740 NC_015222.1 629753 630517 D KEGG: nmu:Nmul_A1173 methyltransferase FkbM; TIGRFAM: Methyltransferase FkbM; PFAM: Protein of unknown function Met10; FkbM family methyltransferase 629753..630517 Nitrosomonas sp. AL212 10297244 YP_004293840.1 CDS NAL212_0741 NC_015222.1 630536 631564 D PFAM: Glycosyl transferase, family 2; KEGG: nmu:Nmul_A0432 glycosyl transferase family protein; family 2 glycosyl transferase 630536..631564 Nitrosomonas sp. AL212 10297245 YP_004293841.1 CDS NAL212_0742 NC_015222.1 631585 632775 D PFAM: O-antigen ligase-related; KEGG: nmu:Nmul_A0418 O-antigen polymerase; O-antigen polymerase 631585..632775 Nitrosomonas sp. AL212 10297246 YP_004293842.1 CDS NAL212_0743 NC_015222.1 632898 633878 D PFAM: Transposase, IS4-like; KEGG: cyn:Cyan7425_5319 transposase IS4 family protein; transposase IS4 family protein 632898..633878 Nitrosomonas sp. AL212 10297247 YP_004293843.1 CDS NAL212_0744 NC_015222.1 633971 634960 D PFAM: Methyltransferase type 11; KEGG: gme:Gmet_2177 ubiquinone/menaquinone biosynthesis methylase-like protein; type 11 methyltransferase 633971..634960 Nitrosomonas sp. AL212 10297248 YP_004293844.1 CDS NAL212_0745 NC_015222.1 634989 635672 D PFAM: O-methyltransferase, family 3; KEGG: nmu:Nmul_A0939 O-methyltransferase family protein; O-methyltransferase family protein 634989..635672 Nitrosomonas sp. AL212 10297249 YP_004293845.1 CDS NAL212_0746 NC_015222.1 635838 636092 D PFAM: Protein of unknown function DUF2024; KEGG: nmu:Nmul_A2677 hypothetical protein; hypothetical protein 635838..636092 Nitrosomonas sp. AL212 10297250 YP_004293846.1 CDS NAL212_0747 NC_015222.1 636198 636713 D KEGG: neu:NE1679 hypothetical protein; hypothetical protein 636198..636713 Nitrosomonas sp. AL212 10297251 YP_004293847.1 CDS NAL212_0748 NC_015222.1 636777 637121 D PFAM: Arsenate reductase-like; KEGG: neu:NE1678 putative arsenate reductase; arsenate reductase-like protein 636777..637121 Nitrosomonas sp. AL212 10297252 YP_004293848.1 CDS NAL212_0749 NC_015222.1 637216 637638 R KEGG: nmu:Nmul_A0572 50S ribosomal protein L19; TIGRFAM: Ribosomal protein L19; PFAM: Ribosomal protein L19; 50S ribosomal protein L19 complement(637216..637638) Nitrosomonas sp. AL212 10297253 YP_004293849.1 CDS NAL212_0750 NC_015222.1 637625 638431 R TIGRFAM: tRNA (guanine-N1-)-methyltransferase, bacteria; KEGG: nmu:Nmul_A0571 tRNA (guanine-N(1)-)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; tRNA (guanine-N1)-methyltransferase complement(637625..638431) Nitrosomonas sp. AL212 10297254 YP_004293850.1 CDS NAL212_0751 NC_015222.1 638442 638945 R TIGRFAM: 16S rRNA processing protein RimM; HAMAP: 16S rRNA processing protein RimM; KEGG: nmu:Nmul_A0570 16S rRNA-processing protein RimM; PFAM: RimM protein; PRC-barrel; ribosome maturation factor rimM complement(638442..638945) Nitrosomonas sp. AL212 10297255 YP_004293851.1 CDS NAL212_0752 NC_015222.1 638978 639244 R KEGG: net:Neut_0445 30S ribosomal protein S16; TIGRFAM: Ribosomal protein S16; PFAM: Ribosomal protein S16; 30S ribosomal protein S16 complement(638978..639244) Nitrosomonas sp. AL212 10297256 YP_004293852.1 CDS NAL212_0753 NC_015222.1 639476 640771 D KEGG: nmu:Nmul_A0339 hypothetical protein; manually curated; PFAM: Cysteine-rich domain; 4Fe-4S binding domain; hypothetical protein 639476..640771 Nitrosomonas sp. AL212 10297257 YP_004293853.1 CDS NAL212_0754 NC_015222.1 640865 641491 D PFAM: Ubiquinone biosynthesis-like protein; KEGG: nmu:Nmul_A0341 putative ubiquinone biosynthesis protein; Ubiquinone biosynthesis family protein 640865..641491 Nitrosomonas sp. AL212 10297258 YP_004293854.1 CDS NAL212_0755 NC_015222.1 641566 642129 D PFAM: Protein of unknown function DUF179; KEGG: nmu:Nmul_A2478 hypothetical protein; hypothetical protein 641566..642129 Nitrosomonas sp. AL212 10297259 YP_004293855.1 CDS NAL212_0756 NC_015222.1 642142 642627 D TIGRFAM: Resolvase, holliday junction-type, YqgF-like; PFAM: Resolvase, holliday junction-type, YqgF-like; KEGG: net:Neut_0449 Holliday junction resolvase-like protein; SMART: Resolvase, RNase H-like fold; Holliday junction resolvase YqgF 642142..642627 Nitrosomonas sp. AL212 10297260 YP_004293856.1 CDS NAL212_0757 NC_015222.1 642608 643114 D KEGG: net:Neut_0450 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; PFAM: Phosphoribosyltransferase; Uracil phosphoribosyltransferase 642608..643114 Nitrosomonas sp. AL212 10297261 YP_004293857.1 CDS NAL212_0758 NC_015222.1 643111 644064 D TIGRFAM: Aspartate carbamoyltransferase, eukaryotic; KEGG: nmu:Nmul_A2481 aspartate carbamoyltransferase catalytic subunit; PFAM: Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain; Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; aspartate carbamoyltransferase 643111..644064 Nitrosomonas sp. AL212 10297262 YP_004293858.1 CDS NAL212_0759 NC_015222.1 644082 645356 D KEGG: nmu:Nmul_A2482 dihydroorotase; TIGRFAM: Dihydroorotase; PFAM: Amidohydrolase 1; dihydroorotase, multifunctional complex type 644082..645356 Nitrosomonas sp. AL212 10297263 YP_004293859.1 CDS NAL212_0760 NC_015222.1 645424 647517 D KEGG: neu:NE1663 M3 family peptidase; PFAM: Peptidase M3A/M3B, thimet/oligopeptidase F; oligopeptidase A 645424..647517 Nitrosomonas sp. AL212 10297264 YP_004293860.1 CDS NAL212_0761 NC_015222.1 647750 648514 D PFAM: VacJ-like lipoprotein; KEGG: net:Neut_1536 VacJ family lipoprotein; VacJ family lipoprotein 647750..648514 Nitrosomonas sp. AL212 10297265 YP_004293861.1 CDS NAL212_0762 NC_015222.1 648879 650033 D KEGG: nmu:Nmul_A0171 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; rubredoxin--NAD(+) reductase 648879..650033 Nitrosomonas sp. AL212 10297266 YP_004293862.1 CDS NAL212_0763 NC_015222.1 650115 650720 D KEGG: neu:NE0055 intracellular septation protein A; TIGRFAM: Intracellular septation protein A; PFAM: Intracellular septation protein A; intracellular septation protein A 650115..650720 Nitrosomonas sp. AL212 10297267 YP_004293863.1 CDS NAL212_0764 NC_015222.1 650717 651022 D PFAM: YCII-related; KEGG: nmu:Nmul_A2112 YCII-related; hypothetical protein 650717..651022 Nitrosomonas sp. AL212 10297268 YP_004293864.1 CDS NAL212_0765 NC_015222.1 651177 651971 D PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; KEGG: nmu:Nmul_A2114 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 651177..651971 Nitrosomonas sp. AL212 10297269 YP_004293865.1 CDS NAL212_0766 NC_015222.1 652002 653084 R TIGRFAM: Alanine racemase; KEGG: nmu:Nmul_A2115 alanine racemase; PFAM: Alanine racemase, N-terminal; Alanine racemase, C-terminal; alanine racemase complement(652002..653084) Nitrosomonas sp. AL212 10297270 YP_004293866.1 CDS NAL212_0767 NC_015222.1 653301 654575 D KEGG: nmu:Nmul_A2116 lysophospholipid transporter LplT; manually curated; PFAM: Major facilitator superfamily MFS-1; major facilitator superfamily protein 653301..654575 Nitrosomonas sp. AL212 10297271 YP_004293867.1 CDS NAL212_0768 NC_015222.1 654592 655347 R KEGG: neu:NE1398 putative DNA polymerase-related protein; TIGRFAM: Phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase-like; phage SPO1 DNA polymerase-like protein complement(654592..655347) Nitrosomonas sp. AL212 10297272 YP_004293868.1 CDS NAL212_0769 NC_015222.1 655344 655814 R KEGG: neu:NE1399 GCN5-related N-acetyltransferase; TIGRFAM: Ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; ribosomal-protein-alanine acetyltransferase complement(655344..655814) Nitrosomonas sp. AL212 10297273 YP_004293869.1 CDS NAL212_0770 NC_015222.1 655798 656472 R KEGG: nmu:Nmul_A2123 peptidase M22, glycoprotease; TIGRFAM: Conserved hypothetical protein CHP03725, YeaZ; PFAM: Peptidase M22, glycoprotease; hypothetical protein complement(655798..656472) Nitrosomonas sp. AL212 10297274 YP_004293870.1 CDS NAL212_0771 NC_015222.1 656554 657099 R manually curated; TIGRFAM: 2',5' RNA ligase; KEGG: nmu:Nmul_A2125 2',5' RNA ligase; PFAM: Phosphoesterase, HXTX; 2'-5' RNA ligase complement(656554..657099) Nitrosomonas sp. AL212 10297275 YP_004293871.1 CDS NAL212_0772 NC_015222.1 657096 657590 R TIGRFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; HAMAP: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; KEGG: nmu:Nmul_A2126 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(657096..657590) Nitrosomonas sp. AL212 10297276 YP_004293872.1 CDS NAL212_0773 NC_015222.1 657587 658291 R PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; manually curated; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: nmu:Nmul_A2127 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(657587..658291) Nitrosomonas sp. AL212 10297277 YP_004293873.1 CDS NAL212_0774 NC_015222.1 658507 659614 D KEGG: slt:Slit_1503 hypothetical protein; hypothetical protein join(658507..658587,658589..659614) Nitrosomonas sp. AL212 10297278 YP_004293874.1 CDS NAL212_0775 NC_015222.1 665385 666329 D PFAM: Peptidase S49; KEGG: neu:NE1024 U7 family peptidase; peptidase S49 665385..666329 Nitrosomonas sp. AL212 10297284 YP_004293875.1 CDS NAL212_0778 NC_015222.1 667961 668434 R KEGG: neu:NE1553 transposase; transposase complement(667961..668434) Nitrosomonas sp. AL212 10297287 YP_004293876.1 CDS NAL212_0780 NC_015222.1 669872 671179 R PFAM: Transposase, IS4-like; KEGG: dde:Dde_2849 ISPg7, transposase; transposase IS4 family protein complement(669872..671179) Nitrosomonas sp. AL212 10297289 YP_004293877.1 CDS NAL212_0782 NC_015222.1 671864 672244 R KEGG: nha:Nham_4014 ISSpo6, transposase orf A; ISSpo6, transposase orf A complement(671864..672244) Nitrosomonas sp. AL212 10297291 YP_004293878.1 CDS NAL212_0783 NC_015222.1 672475 673386 R TIGRFAM: dTDP-4-dehydrorhamnose reductase; KEGG: meh:M301_1164 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase complement(672475..673386) Nitrosomonas sp. AL212 10297292 YP_004293879.1 CDS NAL212_0784 NC_015222.1 673386 674441 R TIGRFAM: dTDP-glucose 4,6-dehydratase; KEGG: pol:Bpro_4022 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; dTDP-glucose 4,6-dehydratase complement(673386..674441) Nitrosomonas sp. AL212 10297293 YP_004293880.1 CDS NAL212_0785 NC_015222.1 674533 675885 R TIGRFAM: Lysidine-tRNA(Ile) synthetase, N-terminal; Lysidine-tRNA(Ile) synthetase, C-terminal; PFAM: tRNA(Ile)-lysidine/2-thiocytidine synthase; Lysidine-tRNA(Ile) synthetase, substrate-binding domain; Lysidine-tRNA(Ile) synthetase, C-terminal; KEGG: nmu:Nmul_A1809 hypothetical protein; SMART: Lysidine-tRNA(Ile) synthetase, C-terminal; tRNA(Ile)-lysidine synthetase complement(674533..675885) Nitrosomonas sp. AL212 10297294 YP_004293881.1 CDS NAL212_0786 NC_015222.1 675854 676822 R TIGRFAM: Acetyl-CoA carboxylase, alpha subunit; KEGG: neu:NE1021 acetyl-CoA carboxylase carboxyltransferase subunit alpha; PFAM: Acetyl-CoA carboxylase, alpha subunit; acetyl-CoA carboxylase, carboxyl transferase subunit alpha complement(675854..676822) Nitrosomonas sp. AL212 10297295 YP_004293882.1 CDS NAL212_0787 NC_015222.1 677101 677625 D TIGRFAM: Methionine sulphoxide reductase B; KEGG: app:CAP2UW1_3719 methionine-R-sulfoxide reductase; PFAM: Methionine sulphoxide reductase B; methionine-R-sulfoxide reductase 677101..677625 Nitrosomonas sp. AL212 10297296 YP_004293883.1 CDS NAL212_0788 NC_015222.1 677630 678283 D TIGRFAM: Peptide methionine sulphoxide reductase MsrA; KEGG: nhl:Nhal_3184 peptide methionine sulfoxide reductase; PFAM: Peptide methionine sulphoxide reductase MsrA; peptide methionine sulfoxide reductase 677630..678283 Nitrosomonas sp. AL212 10297297 YP_004293884.1 CDS NAL212_0789 NC_015222.1 678303 679412 D KEGG: nmu:Nmul_A1143 cupin region; PFAM: Cupin, JmjC-type; SMART: Transcription factor jumonji/aspartyl beta-hydroxylase; hypothetical protein 678303..679412 Nitrosomonas sp. AL212 10297298 YP_004293885.1 CDS NAL212_0790 NC_015222.1 679634 680941 D PFAM: Transposase, IS4-like; KEGG: dde:Dde_2849 ISPg7, transposase; transposase IS4 family protein 679634..680941 Nitrosomonas sp. AL212 10297299 YP_004293886.1 CDS NAL212_0791 NC_015222.1 681266 683032 D SMART: Peptidase, metallopeptidase; KEGG: psb:Psyr_3983 serralysin; peptidase metallopeptidase 681266..683032 Nitrosomonas sp. AL212 10297300 YP_004293887.1 CDS NAL212_0792 NC_015222.1 683190 684725 D KEGG: pst:PSPTO_3193 metalloprotease, putative; PFAM: Peptidase M10, metallopeptidase; SMART: Peptidase, metallopeptidase; peptidase M10A and M12B matrixin and adamalysin 683190..684725 Nitrosomonas sp. AL212 10297301 YP_004293888.1 CDS NAL212_0793 NC_015222.1 684868 686034 R PFAM: (Uracil-5)-methyltransferase; KEGG: neu:NE1857 SAM-binding motif-containing protein; (uracil-5)-methyltransferase complement(684868..686034) Nitrosomonas sp. AL212 10297302 YP_004293889.1 CDS NAL212_0794 NC_015222.1 686068 686535 D TIGRFAM: Methionine sulphoxide reductase B; KEGG: bcy:Bcer98_3954 bifunctional methionine sulfoxide reductase A/B protein; PFAM: Methionine sulphoxide reductase B; methionine-R-sulfoxide reductase 686068..686535 Nitrosomonas sp. AL212 10297303 YP_004293890.1 CDS NAL212_0795 NC_015222.1 686544 687959 D KEGG: neu:NE0601 Na+/H+ antiporter NhaC; TIGRFAM: Na+/H+ antiporter NhaC; PFAM: Na+/H+ antiporter NhaC-like; Na+/H+ antiporter NhaC 686544..687959 Nitrosomonas sp. AL212 10297304 YP_004293891.1 CDS NAL212_0796 NC_015222.1 688076 688291 D KEGG: mru:mru_0760 hypothetical protein; hypothetical protein 688076..688291 Nitrosomonas sp. AL212 10297305 YP_004293892.1 CDS NAL212_0797 NC_015222.1 688637 689446 D KEGG: nmu:Nmul_A2766 ammonia monooxygenase/methane monooxygenase, subunit C; TIGRFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit C; PFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit C; methane monooxygenase/ammonia monooxygenase subunit C 688637..689446 Nitrosomonas sp. AL212 10297306 YP_004293893.1 CDS NAL212_0798 NC_015222.1 689621 690445 D KEGG: nmu:Nmul_A2765 ammonia monooxygenase; TIGRFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit A; PFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit A; methane monooxygenase/ammonia monooxygenase subunit A 689621..690445 Nitrosomonas sp. AL212 10297307 YP_004293894.1 CDS NAL212_0799 NC_015222.1 690445 691707 D KEGG: nmu:Nmul_A2764 monooxygenase subunit B protein; TIGRFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit B; PFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit B; methane monooxygenase/ammonia monooxygenase subunit B 690445..691707 Nitrosomonas sp. AL212 10297308 YP_004293895.1 CDS NAL212_0800 NC_015222.1 691868 692455 D KEGG: nmu:Nmul_A1398 hypothetical protein; hypothetical protein 691868..692455 Nitrosomonas sp. AL212 10297309 YP_004293896.1 CDS NAL212_0801 NC_015222.1 692523 693092 D KEGG: nmu:Nmul_A2762 hypothetical protein; hypothetical protein 692523..693092 Nitrosomonas sp. AL212 10297310 YP_004293897.1 CDS NAL212_0802 NC_015222.1 693219 693620 D PFAM: Copper resistance protein CopC, core; KEGG: neu:NE2059 putative copper export proteins; copper resistance protein CopC 693219..693620 Nitrosomonas sp. AL212 10297311 YP_004293898.1 CDS NAL212_0803 NC_015222.1 693634 695643 D PFAM: Copper resistance D; Cytochrome c, class I; Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; KEGG: nmu:Nmul_A2760 cytochrome c, class I; copper resistance D domain-containing protein 693634..695643 Nitrosomonas sp. AL212 10297312 YP_004293899.1 CDS NAL212_0804 NC_015222.1 696033 696242 R PFAM: Heavy metal transport/detoxification protein; KEGG: pmu:PM1891 hypothetical protein; heavy metal transport/detoxification protein complement(696033..696242) Nitrosomonas sp. AL212 10297313 YP_004293900.1 CDS NAL212_0806 NC_015222.1 696538 697167 R KEGG: xcv:XCV1523 outer membrane lipoprotein; hypothetical protein complement(696538..697167) Nitrosomonas sp. AL212 10297315 YP_004293901.1 CDS NAL212_0807 NC_015222.1 697299 698078 R KEGG: net:Neut_1915 sec-independent protein translocase, TatC subunit; TIGRFAM: Twin arginine-targeting protein translocase, TatC; PFAM: Sec-independent periplasmic protein translocase; Sec-independent protein translocase subunit TatC complement(697299..698078) Nitrosomonas sp. AL212 10297316 YP_004293902.1 CDS NAL212_0808 NC_015222.1 698123 698518 R KEGG: dar:Daro_3374 sec-independent protein translocase TatB; TIGRFAM: Twin-arginine translocation protein TatB; PFAM: Bacterial sec-independent translocation protein MttA/Hcf106; twin-arginine translocation protein subunit TatB complement(698123..698518) Nitrosomonas sp. AL212 10297317 YP_004293903.1 CDS NAL212_0809 NC_015222.1 698598 698927 R KEGG: neu:NE0639 twin arginine translocase protein A; TIGRFAM: Twin-arginine translocation protein TatA/E; PFAM: Bacterial sec-independent translocation protein MttA/Hcf106; twin-arginine translocation protein, TatA/E family subunit complement(698598..698927) Nitrosomonas sp. AL212 10297318 YP_004293904.1 CDS NAL212_0810 NC_015222.1 698960 699310 R KEGG: nmu:Nmul_A0811 histidine triad (HIT) protein; histidine triad (HIT) protein complement(698960..699310) Nitrosomonas sp. AL212 10297319 YP_004293905.1 CDS NAL212_0811 NC_015222.1 699316 699642 R KEGG: neu:NE0641 phosphoribosyl-ATP pyrophosphatase; TIGRFAM: Phosphoribosyl-ATP pyrophosphohydrolase; PFAM: Phosphoribosyl-ATP pyrophosphohydrolase-like; phosphoribosyl-ATP diphosphatase complement(699316..699642) Nitrosomonas sp. AL212 10297320 YP_004293906.1 CDS NAL212_0812 NC_015222.1 699639 700031 R KEGG: nmu:Nmul_A0813 phosphoribosyl-AMP cyclohydrolase; PFAM: Phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-AMP cyclohydrolase complement(699639..700031) Nitrosomonas sp. AL212 10297321 YP_004293907.1 CDS NAL212_0813 NC_015222.1 700083 700856 R TIGRFAM: Histidine biosynthesis, HisF; KEGG: nmu:Nmul_A0814 imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: Histidine biosynthesis; Imidazole glycerol phosphate synthase cyclase subunit complement(700083..700856) Nitrosomonas sp. AL212 10297322 YP_004293908.1 CDS NAL212_0814 NC_015222.1 700925 701680 R TIGRFAM: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA; KEGG: mfa:Mfla_0253 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; PFAM: Histidine biosynthesis; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase complement(700925..701680) Nitrosomonas sp. AL212 10297323 YP_004293909.1 CDS NAL212_0815 NC_015222.1 701735 702379 R KEGG: nmu:Nmul_A0816 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; TIGRFAM: Imidazole glycerol phosphate synthase, subunit H; PFAM: Glutamine amidotransferase class-I, C-terminal; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit complement(701735..702379) Nitrosomonas sp. AL212 10297324 YP_004293910.1 CDS NAL212_0816 NC_015222.1 702410 702997 R KEGG: gca:Galf_0434 imidazoleglycerol-phosphate dehydratase; PFAM: Imidazoleglycerol-phosphate dehydratase; imidazoleglycerol-phosphate dehydratase complement(702410..702997) Nitrosomonas sp. AL212 10297325 YP_004293911.1 CDS NAL212_0817 NC_015222.1 703039 704124 R TIGRFAM: Histidinol-phosphate aminotransferase; KEGG: nmu:Nmul_A0818 histidinol-phosphate aminotransferase; PFAM: Aminotransferase, class I/classII; histidinol-phosphate aminotransferase complement(703039..704124) Nitrosomonas sp. AL212 10297326 YP_004293912.1 CDS NAL212_0818 NC_015222.1 704400 705587 R PFAM: Protein of unknown function DUF185; KEGG: nmu:Nmul_A0337 hypothetical protein; hypothetical protein complement(704400..705587) Nitrosomonas sp. AL212 10297327 YP_004293913.1 CDS NAL212_0819 NC_015222.1 705652 706392 D KEGG: nmu:Nmul_A0336 pteridine reductase; PFAM: Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-ACP reductase 705652..706392 Nitrosomonas sp. AL212 10297328 YP_004293914.1 CDS NAL212_0820 NC_015222.1 706727 707269 D PFAM: Chorismate--pyruvate lyase; manually curated; HAMAP: Chorismate--pyruvate lyase; KEGG: nmu:Nmul_A2612 chorismate lyase; chorismate--pyruvate lyase 706727..707269 Nitrosomonas sp. AL212 10297329 YP_004293915.1 CDS NAL212_0821 NC_015222.1 707266 708135 D TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; HAMAP: 4-hydroxybenzoate polyprenyl transferase; KEGG: neu:NE1838 4-hydroxybenzoate octaprenyltransferase; PFAM: UbiA prenyltransferase; 4-hydroxybenzoate octaprenyltransferase 707266..708135 Nitrosomonas sp. AL212 10297330 YP_004293916.1 CDS NAL212_0822 NC_015222.1 708145 709608 D KEGG: nmu:Nmul_A2610 carboxylyase-like protein; TIGRFAM: Carboxylyase-related; PFAM: Carboxylyase-related; UbiD family decarboxylase 708145..709608 Nitrosomonas sp. AL212 10297331 YP_004293917.1 CDS NAL212_0823 NC_015222.1 709580 709954 D PFAM: Protein of unknown function DUF486; KEGG: net:Neut_0429 hypothetical protein; hypothetical protein 709580..709954 Nitrosomonas sp. AL212 10297332 YP_004293918.1 CDS NAL212_0824 NC_015222.1 710153 712369 D PFAM: Organic solvent tolerance protein, C-terminal; Organic solvent tolerance-like, N-terminal; KEGG: net:Neut_1216 organic solvent tolerance protein; organic solvent tolerance protein 710153..712369 Nitrosomonas sp. AL212 10297333 YP_004293919.1 CDS NAL212_0825 NC_015222.1 712415 713740 D PFAM: SurA N-terminal; Peptidyl-prolyl cis-trans isomerase, PpiC-type; KEGG: nmu:Nmul_A0520 PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain 712415..713740 Nitrosomonas sp. AL212 10297334 YP_004293920.1 CDS NAL212_0826 NC_015222.1 713737 714747 D TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; KEGG: nmu:Nmul_A0519 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase 713737..714747 Nitrosomonas sp. AL212 10297335 YP_004293921.1 CDS NAL212_0827 NC_015222.1 714737 715501 D TIGRFAM: Ribosomal RNA adenine dimethylase; PFAM: Ribosomal RNA adenine methylase transferase; KEGG: nmu:Nmul_A0518 dimethyladenosine transferase; SMART: Ribosomal RNA adenine methylase transferase, N-terminal; dimethyladenosine transferase 714737..715501 Nitrosomonas sp. AL212 10297336 YP_004293922.1 CDS NAL212_0828 NC_015222.1 715615 716877 D KEGG: lpf:lpl0095 hypothetical protein; hypothetical protein 715615..716877 Nitrosomonas sp. AL212 10297337 YP_004293923.1 CDS NAL212_0833 NC_015222.1 719638 720963 R KEGG: hse:Hsero_2417 subtilisin-like serine protease; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; subtilisin complement(719638..720963) Nitrosomonas sp. AL212 10297342 YP_004293924.1 CDS NAL212_0834 NC_015222.1 720976 721686 R KEGG: xop:PXO_00213 hypothetical protein; hypothetical protein complement(720976..721686) Nitrosomonas sp. AL212 10297343 YP_004293925.1 CDS NAL212_0835 NC_015222.1 721690 722271 R KEGG: hse:Hsero_2419 RNA polymerase sigma-E factor protein; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; ECF subfamily RNA polymerase sigma-24 subunit complement(721690..722271) Nitrosomonas sp. AL212 10297344 YP_004293926.1 CDS NAL212_0836 NC_015222.1 722400 723137 R KEGG: gpb:HDN1F_36050 hypothetical protein; hypothetical protein complement(722400..723137) Nitrosomonas sp. AL212 10297345 YP_004293927.1 CDS NAL212_0837 NC_015222.1 724512 725672 D PFAM: Glycoside hydrolase, family 42, N-terminal; KEGG: nde:NIDE1370 hypothetical protein; glycoside hydrolase family protein 724512..725672 Nitrosomonas sp. AL212 10297347 YP_004293928.1 CDS NAL212_0838 NC_015222.1 726381 726692 D KEGG: saf:SULAZ_0652 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 726381..726692 Nitrosomonas sp. AL212 10297348 YP_004293929.1 CDS NAL212_0839 NC_015222.1 726924 727007 R manually curated; hypothetical protein complement(726924..727007) Nitrosomonas sp. AL212 10297349 YP_004293930.1 CDS NAL212_0841 NC_015222.1 728315 730441 D KEGG: mar:MAE_06890 BNR repeat-containing glycosyl hydrolase; hypothetical protein 728315..730441 Nitrosomonas sp. AL212 10297351 YP_004293931.1 CDS NAL212_0842 NC_015222.1 730554 732605 R TIGRFAM: PAS; PFAM: CHASE; ATPase-like, ATP-binding domain; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: hch:HCH_00809 signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS; PAC motif; multi-sensor signal transduction histidine kinase complement(730554..732605) Nitrosomonas sp. AL212 10297352 YP_004293932.1 CDS NAL212_0843 NC_015222.1 733094 733957 D KEGG: gca:Galf_2077 metal dependent phosphohydrolase; PFAM: Metal-dependent hydrolase HDOD; SMART: Metal-dependent phosphohydrolase, HD domain; metal dependent phosphohydrolase 733094..733957 Nitrosomonas sp. AL212 10297353 YP_004293933.1 CDS NAL212_0844 NC_015222.1 734193 735662 R KEGG: rxy:Rxyl_3110 sulfatase; PFAM: Sulfatase; N-acetylglucosamine-6-sulfatase complement(734193..735662) Nitrosomonas sp. AL212 10297354 YP_004293934.1 CDS NAL212_0845 NC_015222.1 735766 736107 R KEGG: tpr:Tpau_2513 ABC drug efflux pump, inner membrane subunit, DrrB family; multidrug ABC transporter permease complement(735766..736107) Nitrosomonas sp. AL212 10297355 YP_004293935.1 CDS NAL212_0846 NC_015222.1 736254 737426 D PFAM: Protein of unknown function DUF839; WD40-like Beta Propeller; KEGG: sna:Snas_5802 hypothetical protein; hypothetical protein 736254..737426 Nitrosomonas sp. AL212 10297356 YP_004293936.1 CDS NAL212_0847 NC_015222.1 738091 738246 R KEGG: fnu:FN1252 34 kDa membrane antigen precursor; membrane protein complement(738091..738246) Nitrosomonas sp. AL212 10297357 YP_004293937.1 CDS NAL212_0848 NC_015222.1 738458 739681 R PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: neu:NE1900 hypothetical protein; hypothetical protein complement(738458..739681) Nitrosomonas sp. AL212 10297358 YP_004293938.1 CDS NAL212_0849 NC_015222.1 739678 740430 R PFAM: ABC transporter-like; KEGG: neu:NE1899 ABC transporter ATPase; SMART: ATPase, AAA+ type, core; phosphonate-transporting ATPase complement(739678..740430) Nitrosomonas sp. AL212 10297359 YP_004293939.1 CDS NAL212_0850 NC_015222.1 740430 741575 R KEGG: neu:NE1898 hypothetical protein; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit complement(740430..741575) Nitrosomonas sp. AL212 10297360 YP_004293940.1 CDS NAL212_0851 NC_015222.1 741677 743191 R PFAM: Peptidase M48; KEGG: nmu:Nmul_A2537 peptidase M48, Ste24p; peptidase M48 Ste24p complement(741677..743191) Nitrosomonas sp. AL212 10297361 YP_004293941.1 CDS NAL212_0852 NC_015222.1 743233 744864 R KEGG: nmu:Nmul_A2535 NAD+ synthetase; TIGRFAM: NAD synthase; PFAM: NAD/GMP synthase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD+ synthetase complement(743233..744864) Nitrosomonas sp. AL212 10297362 YP_004293942.1 CDS NAL212_0853 NC_015222.1 744889 746265 R PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal; KEGG: net:Neut_2007 phosphomannomutase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I complement(744889..746265) Nitrosomonas sp. AL212 10297363 YP_004293943.1 CDS NAL212_0854 NC_015222.1 746373 746576 R KEGG: nmu:Nmul_A1061 hypothetical protein; hypothetical protein complement(746373..746576) Nitrosomonas sp. AL212 10297364 YP_004293944.1 CDS NAL212_0855 NC_015222.1 746602 747522 R TIGRFAM: Branched-chain amino acid aminotransferase I; KEGG: nmu:Nmul_A1060 branched-chain amino acid aminotransferase; PFAM: Aminotransferase, class IV; branched-chain amino acid aminotransferase complement(746602..747522) Nitrosomonas sp. AL212 10297365 YP_004293945.1 CDS NAL212_0856 NC_015222.1 747839 748159 R KEGG: pfl:PFL_4147 putative lipoprotein; hypothetical protein complement(747839..748159) Nitrosomonas sp. AL212 10297366 YP_004293946.1 CDS NAL212_0857 NC_015222.1 748593 748766 D KEGG: fno:Fnod_0931 hypothetical protein; hypothetical protein 748593..748766 Nitrosomonas sp. AL212 10297367 YP_004293947.1 CDS NAL212_0858 NC_015222.1 749309 750652 D PFAM: Sulphate transporter; KEGG: tgr:Tgr7_1442 sulphate transporter; sulfate transporter 749309..750652 Nitrosomonas sp. AL212 10297368 YP_004293948.1 CDS NAL212_0859 NC_015222.1 750748 751155 D PFAM: UspA; KEGG: app:CAP2UW1_1381 UspA domain protein; UspA domain-containing protein 750748..751155 Nitrosomonas sp. AL212 10297369 YP_004293949.1 CDS NAL212_0860 NC_015222.1 751210 751422 D KEGG: zin:ZICARI_039 putative cytochrome bo terminal oxidase subunit I/cytochrome bo terminal oxidase subunit III fusion protein; hypothetical protein 751210..751422 Nitrosomonas sp. AL212 10297370 YP_004293950.1 CDS NAL212_0861 NC_015222.1 752115 753275 D KEGG: nde:NIDE1370 hypothetical protein; hypothetical protein 752115..753275 Nitrosomonas sp. AL212 10297371 YP_004293951.1 CDS NAL212_0862 NC_015222.1 753389 754057 R manually curated; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; KEGG: nmu:Nmul_A0728 two component LuxR family transcriptional regulator; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; two component transcriptional regulator, LuxR family complement(753389..754057) Nitrosomonas sp. AL212 10297372 YP_004293952.1 CDS NAL212_0863 NC_015222.1 754047 756164 R KEGG: nmu:Nmul_A0727 putative signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; integral membrane sensor signal transduction histidine kinase complement(754047..756164) Nitrosomonas sp. AL212 10297373 YP_004293953.1 CDS NAL212_0864 NC_015222.1 756457 757311 D KEGG: pub:SAR11_0063 type II secretion; hypothetical protein 756457..757311 Nitrosomonas sp. AL212 10297374 YP_004293954.1 CDS NAL212_0865 NC_015222.1 757543 758775 D PFAM: Peroxiredoxin, OsmC-like protein; Peptidase S9, prolyl oligopeptidase, catalytic domain; KEGG: alv:Alvin_1830 OsmC family protein; OsmC family protein 757543..758775 Nitrosomonas sp. AL212 10297375 YP_004293955.1 CDS NAL212_0866 NC_015222.1 758782 759186 D KEGG: slt:Slit_2540 RNA-binding S4 domain protein; PFAM: RNA-binding S4; SMART: RNA-binding S4; RNA-binding S4 domain-containing protein 758782..759186 Nitrosomonas sp. AL212 10297376 YP_004293956.1 CDS NAL212_0867 NC_015222.1 759204 759989 D PFAM: Class II aldolase/adducin, N-terminal; KEGG: neu:NE0048 class II aldolase/adducin domain protein; class II aldolase/adducin family protein 759204..759989 Nitrosomonas sp. AL212 10297377 YP_004293957.1 CDS NAL212_0868 NC_015222.1 760334 761527 D TIGRFAM: Uncharacterised protein family HDIG; PFAM: Protein of unknown function DUF3391; Metal-dependent phosphohydrolase, HD subdomain; KEGG: slt:Slit_1975 metal dependent phosphohydrolase; SMART: Metal-dependent phosphohydrolase, HD domain; metal dependent phosphohydrolase 760334..761527 Nitrosomonas sp. AL212 10297378 YP_004293958.1 CDS NAL212_0869 NC_015222.1 761542 763869 R KEGG: neu:NE1918 von Willebrand factor type A domain-containing protein; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A; von Willebrand factor type A complement(761542..763869) Nitrosomonas sp. AL212 10297379 YP_004293959.1 CDS NAL212_0870 NC_015222.1 763931 764737 R KEGG: neu:NE1919 nitric oxide reductase NorQ protein; nitric oxide reductase NorQ protein complement(763931..764737) Nitrosomonas sp. AL212 10297380 YP_004293960.1 CDS NAL212_0871 NC_015222.1 764845 765201 R PFAM: Ribulose bisphosphate carboxylase, small chain; KEGG: slt:Slit_0986 ribulose-bisphosphate carboxylase; SMART: Ribulose bisphosphate carboxylase, small chain; ribulose-bisphosphate carboxylase complement(764845..765201) Nitrosomonas sp. AL212 10297381 YP_004293961.1 CDS NAL212_0872 NC_015222.1 765280 766701 R KEGG: slt:Slit_0985 ribulose-bisphosphate carboxylase; PFAM: Ribulose bisphosphate carboxylase, large subunit, C-terminal; Ribulose bisphosphate carboxylase, large subunit, N-terminal; ribulose-bisphosphate carboxylase complement(765280..766701) Nitrosomonas sp. AL212 10297382 YP_004293962.1 CDS NAL212_0873 NC_015222.1 766909 767826 D PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: nmu:Nmul_A0687 LysR family transcriptional regulator; LysR family transcriptional regulator 766909..767826 Nitrosomonas sp. AL212 10297383 YP_004293963.1 CDS NAL212_0874 NC_015222.1 767942 768613 D KEGG: ppr:PBPRB1928 hypothetical protein; hypothetical protein 767942..768613 Nitrosomonas sp. AL212 10297384 YP_004293964.1 CDS NAL212_0875 NC_015222.1 768655 768879 D KEGG: sdn:Sden_3449 hypothetical protein; hypothetical protein 768655..768879 Nitrosomonas sp. AL212 10297385 YP_004293965.1 CDS NAL212_0876 NC_015222.1 769035 770414 D TIGRFAM: Ribosomal protein S12 methylthiotransferase RimO; Methylthiotransferase; PFAM: Radical SAM; Methylthiotransferase, N-terminal; KEGG: nmu:Nmul_A1979 hypothetical protein; SMART: Elongator protein 3/MiaB/NifB; MiaB-like tRNA modifying enzyme YliG 769035..770414 Nitrosomonas sp. AL212 10297386 YP_004293966.1 CDS NAL212_0877 NC_015222.1 770521 771480 R TIGRFAM: tRNA pseudouridine synthase II, TruB; HAMAP: tRNA pseudouridine synthase II, TruB; KEGG: nmu:Nmul_A1862 tRNA pseudouridine synthase B; PFAM: Pseudouridine synthase II; tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal; tRNA pseudouridine synthase B complement(770521..771480) Nitrosomonas sp. AL212 10297387 YP_004293967.1 CDS NAL212_0878 NC_015222.1 771522 771905 R KEGG: nmu:Nmul_A1863 ribosome-binding factor A; TIGRFAM: Ribosome-binding factor A; PFAM: Ribosome-binding factor A; ribosome-binding factor A complement(771522..771905) Nitrosomonas sp. AL212 10297388 YP_004293968.1 CDS NAL212_0879 NC_015222.1 771937 774591 R KEGG: nmu:Nmul_A1864 translation initiation factor IF-2; TIGRFAM: Translation initiation factor aIF-2, bacterial-like; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Initiation factor 2 associated region, bacterial; Translation initiation factor IF-2, N-terminal; Translation elongation factor EFTu/EF1A, domain 2; Translation initiation factor IF- 2, domain 3; translation initiation factor IF-2 complement(771937..774591) Nitrosomonas sp. AL212 10297389 YP_004293969.1 CDS NAL212_0880 NC_015222.1 774680 776152 R TIGRFAM: Transcription termination factor NusA; Transcription termination factor NusA, C-terminal duplication; PFAM: Transcription factor NusA, N-terminal; Ribosomal protein S1, RNA-binding domain; KEGG: nmu:Nmul_A1865 transcription elongation factor NusA; SMART: RNA-binding domain, S1; K Homology; NusA antitermination factor complement(774680..776152) Nitrosomonas sp. AL212 10297390 YP_004293970.1 CDS NAL212_0881 NC_015222.1 776176 776643 R PFAM: Ribosome maturation factor RimP; KEGG: nmu:Nmul_A1866 hypothetical protein; hypothetical protein complement(776176..776643) Nitrosomonas sp. AL212 10297391 YP_004293971.1 CDS NAL212_0882 NC_015222.1 776878 778848 D TIGRFAM: Acetate-CoA ligase; KEGG: net:Neut_1690 acetyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase; acetate/CoA ligase 776878..778848 Nitrosomonas sp. AL212 10297392 YP_004293972.1 CDS NAL212_0883 NC_015222.1 778888 779850 D KEGG: nmu:Nmul_A1869 beta-lactamase-like; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like; beta-lactamase domain-containing protein 778888..779850 Nitrosomonas sp. AL212 10297393 YP_004293973.1 CDS NAL212_0884 NC_015222.1 779966 780169 R KEGG: nml:Namu_0602 major facilitator superfamily MFS_1; hypothetical protein complement(779966..780169) Nitrosomonas sp. AL212 10297394 YP_004293974.1 CDS NAL212_0885 NC_015222.1 780270 780464 R KEGG: tmz:Tmz1t_0525 TRAP dicarboxylate transporter, DctM subunit; TRAP dicarboxylate transporter subunit DctM complement(780270..780464) Nitrosomonas sp. AL212 10297395 YP_004293975.1 CDS NAL212_0887 NC_015222.1 781168 781695 D PFAM: Lipocalin-like; KEGG: sbp:Sbal223_2844 lipocalin family protein; lipocalin family protein 781168..781695 Nitrosomonas sp. AL212 10297397 YP_004293976.1 CDS NAL212_0888 NC_015222.1 781725 781925 D PFAM: Protein of unknown function DUF2905; KEGG: nmu:Nmul_A0975 hypothetical protein; hypothetical protein 781725..781925 Nitrosomonas sp. AL212 10297398 YP_004293977.1 CDS NAL212_0890 NC_015222.1 784635 785075 R PFAM: Protein of unknown function DUF2231, transmembrane; KEGG: neu:NE2151 hypothetical protein; hypothetical protein complement(784635..785075) Nitrosomonas sp. AL212 10297400 YP_004293978.1 CDS NAL212_0891 NC_015222.1 785096 785434 R KEGG: net:Neut_2100 hypothetical protein; hypothetical protein complement(785096..785434) Nitrosomonas sp. AL212 10297401 YP_004293979.1 CDS NAL212_0892 NC_015222.1 785551 786195 D KEGG: neu:NE2153 hypothetical protein; putative transcriptional regulator 785551..786195 Nitrosomonas sp. AL212 10297402 YP_004293980.1 CDS NAL212_0893 NC_015222.1 786503 786853 R KEGG: neu:NE2461 hypothetical protein; hypothetical protein complement(786503..786853) Nitrosomonas sp. AL212 10297403 YP_004293981.1 CDS NAL212_0894 NC_015222.1 787216 790305 D TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; MASE1; Diguanylate cyclase, predicted; PAS fold-3; KEGG: tgr:Tgr7_0245 signal transduction protein containing a membrane domain an EAL and a GGDEF domain; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS; PAC motif; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 787216..790305 Nitrosomonas sp. AL212 10297404 YP_004293982.1 CDS NAL212_0896 NC_015222.1 790854 791444 D KEGG: net:Neut_0132 cytochrome P460 precursor; cytochrome P460 790854..791444 Nitrosomonas sp. AL212 10297406 YP_004293983.1 CDS NAL212_0897 NC_015222.1 792243 792653 R KEGG: nhl:Nhal_2069 nitrosocyanin; TIGRFAM: Nitrosocyanin; PFAM: Cytochrome c oxidase subunit II C-terminal; nitrosocyanin complement(792243..792653) Nitrosomonas sp. AL212 10297407 YP_004293984.1 CDS NAL212_0899 NC_015222.1 793675 794106 R KEGG: ptm:GSPATT00037909001 hypothetical protein; hypothetical protein complement(793675..794106) Nitrosomonas sp. AL212 10297409 YP_004293985.1 CDS NAL212_0900 NC_015222.1 794274 795332 R PFAM: Protein of unknown function DUF457, transmembrane; KEGG: neu:NE0299 hypothetical protein; hypothetical protein complement(794274..795332) Nitrosomonas sp. AL212 10297410 YP_004293986.1 CDS NAL212_0901 NC_015222.1 795345 796049 R PFAM: COQ9; Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: neu:NE0300 TetR family regulatory protein; COQ9 domain-containing protein complement(795345..796049) Nitrosomonas sp. AL212 10297411 YP_004293987.1 CDS NAL212_0902 NC_015222.1 796267 797103 D PFAM: Rhamnosyl O-methyltransferase/Cephalosporin hydroxylase; KEGG: lby:Lbys_1319 hypothetical protein; cephalosporin hydroxylase 796267..797103 Nitrosomonas sp. AL212 10297412 YP_004293988.1 CDS NAL212_0903 NC_015222.1 797353 797790 D PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: ote:Oter_4155 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase 797353..797790 Nitrosomonas sp. AL212 10297413 YP_004293989.1 CDS NAL212_0904 NC_015222.1 798196 798804 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: neu:NE1171 MotA/TolQ/ExbB proton channel family protein; MotA/TolQ/ExbB proton channel 798196..798804 Nitrosomonas sp. AL212 10297414 YP_004293990.1 CDS NAL212_0905 NC_015222.1 799197 800006 D PFAM: VacJ-like lipoprotein; KEGG: nmu:Nmul_A2557 VacJ-like lipoprotein; VacJ family lipoprotein 799197..800006 Nitrosomonas sp. AL212 10297415 YP_004293991.1 CDS NAL212_0906 NC_015222.1 800133 802130 D TIGRFAM: Squalene cyclase; Hopene cyclase; KEGG: net:Neut_1507 squalene-hopene cyclase; PFAM: Prenyltransferase/squalene oxidase; squalene/oxidosqualene cyclase 800133..802130 Nitrosomonas sp. AL212 10297416 YP_004293992.1 CDS NAL212_0907 NC_015222.1 802127 802888 D KEGG: nmu:Nmul_A2555 purine phosphorylase family protein 1; TIGRFAM: Hopanoid-associated phosphorylase HpnG; PFAM: Nucleoside phosphorylase domain; hopanoid-associated phosphorylase 802127..802888 Nitrosomonas sp. AL212 10297417 YP_004293993.1 CDS NAL212_0908 NC_015222.1 802871 804643 R SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, ATP-binding/permease protein; KEGG: noc:Noc_2950 ABC efflux pump, fused ATPase and inner membrane subunits; PFAM: ABC transporter, transmembrane domain; ABC transporter-like; lipid A ABC exporter family, fused ATPase and inner membrane subunits complement(802871..804643) Nitrosomonas sp. AL212 10297418 YP_004293994.1 CDS NAL212_0909 NC_015222.1 804997 806424 R KEGG: rde:RD1_1171 type I secretion target repeat-containing protein; type I secretion target repeat-containing protein complement(804997..806424) Nitrosomonas sp. AL212 10297419 YP_004293995.1 CDS NAL212_0910 NC_015222.1 806662 807192 R PFAM: RTX toxin-activating protein C, bacteria; KEGG: btr:Btr_0686 hypothetical protein; RTX toxin-activating protein C complement(806662..807192) Nitrosomonas sp. AL212 10297420 YP_004293996.1 CDS NAL212_0911 NC_015222.1 807231 807512 R PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; KEGG: hch:HCH_04404 parvulin-like peptidyl-prolyl isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase complement(807231..807512) Nitrosomonas sp. AL212 10297421 YP_004293997.1 CDS NAL212_0912 NC_015222.1 807808 808473 D PFAM: ABC transporter-like; KEGG: nmu:Nmul_A0895 ABC transporter related; SMART: ATPase, AAA+ type, core; Fe(3+)-transporting ATPase 807808..808473 Nitrosomonas sp. AL212 10297422 YP_004293998.1 CDS NAL212_0913 NC_015222.1 808470 811019 D PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: nmu:Nmul_A0894 hypothetical protein; hypothetical protein 808470..811019 Nitrosomonas sp. AL212 10297423 YP_004293999.1 CDS NAL212_0914 NC_015222.1 811019 812113 D PFAM: Hydroxyneurosporene synthase; KEGG: nmu:Nmul_A0893 putative AttH; hydroxyneurosporene synthase 811019..812113 Nitrosomonas sp. AL212 10297424 YP_004294000.1 CDS NAL212_0915 NC_015222.1 812433 812540 D hypothetical protein 812433..812540 Nitrosomonas sp. AL212 10297425 YP_004294001.1 CDS NAL212_0916 NC_015222.1 813110 814342 D PFAM: Uncharacterised protein family UPF0118; KEGG: dma:DMR_30920 hypothetical membrane protein; hypothetical protein 813110..814342 Nitrosomonas sp. AL212 10297426 YP_004294002.1 CDS NAL212_0917 NC_015222.1 814504 815136 D PFAM: SNARE associated Golgi protein; KEGG: net:Neut_0941 DedA family protein; hypothetical protein 814504..815136 Nitrosomonas sp. AL212 10297427 YP_004294003.1 CDS NAL212_0918 NC_015222.1 815242 816807 R PFAM: Amino acid permease domain; KEGG: neu:NE0513 amino acid transporter; amino acid permease-associated protein complement(815242..816807) Nitrosomonas sp. AL212 10297428 YP_004294004.1 CDS NAL212_0919 NC_015222.1 816857 817123 D KEGG: pfh:PFHG_03656 conserved hypothetical protein; hypothetical protein 816857..817123 Nitrosomonas sp. AL212 10297429 YP_004294005.1 CDS NAL212_0920 NC_015222.1 817249 817500 D KEGG: alv:Alvin_3124 protein of unknown function DUF37; TIGRFAM: Protein of unknown function DUF37; PFAM: Protein of unknown function DUF37; hypothetical protein 817249..817500 Nitrosomonas sp. AL212 10297430 YP_004294006.1 CDS NAL212_0922 NC_015222.1 818670 819650 R PFAM: Transposase, IS4-like; KEGG: atu:Atu4436 IS5 family transposase; transposase IS4 family protein complement(818670..819650) Nitrosomonas sp. AL212 10297432 YP_004294007.1 CDS NAL212_0923 NC_015222.1 821240 821404 D hypothetical protein 821240..821404 Nitrosomonas sp. AL212 10297433 YP_004294008.1 CDS NAL212_0924 NC_015222.1 821430 821717 D PFAM: Excinuclease ABC, C subunit, N-terminal; KEGG: cpc:Cpar_1954 excinuclease ABC C subunit domain protein; excinuclease ABC subunit C 821430..821717 Nitrosomonas sp. AL212 10297434 YP_004294009.1 CDS NAL212_0925 NC_015222.1 821714 822943 D KEGG: mdo:100020428 hypothetical protein LOC100020428; hypothetical protein 821714..822943 Nitrosomonas sp. AL212 10297435 YP_004294010.1 CDS NAL212_0926 NC_015222.1 822912 824315 D PFAM: Restriction endonuclease, type I, S subunit, EcoBI; KEGG: mba:Mbar_A1015 hypothetical protein; restriction modification system DNA specificity domain 822912..824315 Nitrosomonas sp. AL212 10297436 YP_004294011.1 CDS NAL212_0927 NC_015222.1 824308 824700 D PFAM: Nucleotidyl transferase domain; KEGG: pin:Ping_0758 DNA polymerase beta subunit; DNA polymerase beta domain-containing protein 824308..824700 Nitrosomonas sp. AL212 10297437 YP_004294012.1 CDS NAL212_0928 NC_015222.1 824681 825121 D PFAM: Protein of unknown function DUF86; KEGG: mmw:Mmwyl1_1312 hypothetical protein; hypothetical protein 824681..825121 Nitrosomonas sp. AL212 10297438 YP_004294013.1 CDS NAL212_0929 NC_015222.1 825073 828384 D KEGG: gur:Gura_1482 hypothetical protein; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: DEAD-like helicase, N-terminal; Restriction endonuclease, type I, EcoRI, R subunit/Type III 825073..828384 Nitrosomonas sp. AL212 10297439 YP_004294014.1 CDS NAL212_0930 NC_015222.1 828503 829675 R KEGG: maq:Maqu_0077 ornithine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2, N-terminal; Orn/DAP/Arg decarboxylase 2, C-terminal; Ornithine decarboxylase complement(828503..829675) Nitrosomonas sp. AL212 10297440 YP_004294015.1 CDS NAL212_0931 NC_015222.1 830330 830800 D KEGG: eba:ebA3117 hypothetical protein; hypothetical protein 830330..830800 Nitrosomonas sp. AL212 10297441 YP_004294016.1 CDS NAL212_0932 NC_015222.1 831176 832906 D KEGG: chu:CHU_2249 pyruvate dehydrogenase (cytochrome); PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, central domain; Pyruvate dehydrogenase (cytochrome) 831176..832906 Nitrosomonas sp. AL212 10297442 YP_004294017.1 CDS NAL212_0933 NC_015222.1 832920 834047 R PFAM: ADP-ribosylation/Crystallin J1; KEGG: nmu:Nmul_A1960 ADP-ribosylation/crystallin J1; ADP-ribosylation/Crystallin J1 complement(832920..834047) Nitrosomonas sp. AL212 10297443 YP_004294018.1 CDS NAL212_0934 NC_015222.1 834757 836151 R TIGRFAM: Glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial; KEGG: nmu:Nmul_A1604 glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; glutamyl-tRNA synthetase complement(834757..836151) Nitrosomonas sp. AL212 10297446 YP_004294019.1 CDS NAL212_0935 NC_015222.1 836350 837924 D TIGRFAM: Acyl-CoA ligase (AMP-forming), exosortase system type 1 associated; KEGG: net:Neut_1417 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; acyl-CoA ligase 836350..837924 Nitrosomonas sp. AL212 10297447 YP_004294020.1 CDS NAL212_0936 NC_015222.1 837924 839159 D TIGRFAM: Pyridoxal-dependent decarboxylase, exosortase system type 1 associated; KEGG: nmu:Nmul_A2669 Orn/DAP/Arg decarboxylase 2; PFAM: Orn/DAP/Arg decarboxylase 2, N-terminal; Orn/DAP/Arg decarboxylase 2, C-terminal; pyridoxal-dependent decarboxylase, exosortase system type 1 associated 837924..839159 Nitrosomonas sp. AL212 10297448 YP_004294021.1 CDS NAL212_0937 NC_015222.1 839560 840384 D KEGG: nmu:Nmul_A1954 hypothetical protein; TIGRFAM: PEP-CTERM/exosortase system-associated acyltransferase, predicted; PFAM: Autoinducer synthesis protein; putative PEP-CTERM/exosortase system-associated acyltransferase 839560..840384 Nitrosomonas sp. AL212 10297449 YP_004294022.1 CDS NAL212_0938 NC_015222.1 840418 840903 D KEGG: nmu:Nmul_A1955 hypothetical protein; hypothetical protein 840418..840903 Nitrosomonas sp. AL212 10297450 YP_004294023.1 CDS NAL212_0939 NC_015222.1 840872 842293 D KEGG: nmu:Nmul_A1956 hypothetical protein; hypothetical protein 840872..842293 Nitrosomonas sp. AL212 10297451 YP_004294024.1 CDS NAL212_0940 NC_015222.1 842306 845206 D TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; PAS fold; Diguanylate cyclase, predicted; KEGG: net:Neut_1425 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 842306..845206 Nitrosomonas sp. AL212 10297452 YP_004294025.1 CDS NAL212_0941 NC_015222.1 845314 846330 D PFAM: Ribonuclease T2; KEGG: nhl:Nhal_0810 ribonuclease T2; ribonuclease T2 845314..846330 Nitrosomonas sp. AL212 10297453 YP_004294026.1 CDS NAL212_0942 NC_015222.1 846931 848844 D TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: gca:Galf_1102 diguanylate cyclase; SMART: Diguanylate cyclase, predicted; diguanylate cyclase 846931..848844 Nitrosomonas sp. AL212 10297454 YP_004294027.1 CDS NAL212_0943 NC_015222.1 849137 850678 R manually curated; TIGRFAM: Uncharacterised protein family, carbohydrate kinase-related; YjeF-related protein, N-terminal; KEGG: nmu:Nmul_A2384 hypothetical protein; PFAM: YjeF-related protein, N-terminal; Uncharacterised protein family, carbohydrate kinase-related; YjeF-like protein complement(849137..850678) Nitrosomonas sp. AL212 10297455 YP_004294028.1 CDS NAL212_0944 NC_015222.1 850768 854754 D KEGG: nmu:Nmul_A2383 phosphoribosylformylglycinamidine synthase; manually curated; TIGRFAM: Phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase-related protein, C-terminal; AIR synthase-related protein; HAMAP: Phosphoribosylformylglycinamidine synthase, bacterial; phosphoribosylformylglycinamidine synthase 850768..854754 Nitrosomonas sp. AL212 10297456 YP_004294029.1 CDS NAL212_0945 NC_015222.1 854795 856024 D KEGG: nmu:Nmul_A2382 PDZ/DHR/GLGF; PFAM: Domain of unknown function DUF399; SMART: PDZ/DHR/GLGF; hypothetical protein 854795..856024 Nitrosomonas sp. AL212 10297457 YP_004294030.1 CDS NAL212_0946 NC_015222.1 856038 858080 D PFAM: Peptidase M1, membrane alanine aminopeptidase, N-terminal; KEGG: nmu:Nmul_A2381 peptidase M1, membrane alanine aminopeptidase; peptidase M1 membrane alanine aminopeptidase 856038..858080 Nitrosomonas sp. AL212 10297458 YP_004294031.1 CDS NAL212_0947 NC_015222.1 858143 861304 R KEGG: nmu:Nmul_A1113 heavy metal efflux pump CzcA; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein; CzcA family heavy metal efflux pump complement(858143..861304) Nitrosomonas sp. AL212 10297459 YP_004294032.1 CDS NAL212_0948 NC_015222.1 861307 862461 R KEGG: nmu:Nmul_A1112 secretion protein HlyD; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit complement(861307..862461) Nitrosomonas sp. AL212 10297460 YP_004294033.1 CDS NAL212_0949 NC_015222.1 862458 863873 R PFAM: Outer membrane efflux protein; KEGG: net:Neut_1767 outer membrane efflux protein; outer membrane efflux protein complement(862458..863873) Nitrosomonas sp. AL212 10297461 YP_004294034.1 CDS NAL212_0950 NC_015222.1 864162 866264 D KEGG: cja:CJA_3563 hypothetical protein; hypothetical protein 864162..866264 Nitrosomonas sp. AL212 10297462 YP_004294035.1 CDS NAL212_0951 NC_015222.1 866317 866709 R PFAM: Protein of unknown function DUF3579; KEGG: cvi:CV_1990 hypothetical protein; hypothetical protein complement(866317..866709) Nitrosomonas sp. AL212 10297463 YP_004294036.1 CDS NAL212_0952 NC_015222.1 866971 867612 R KEGG: app:CAP2UW1_0860 protein of unknown function DUF1555; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial; PEP motif putative anchor domain-containing protein complement(866971..867612) Nitrosomonas sp. AL212 10297464 YP_004294037.1 CDS NAL212_0953 NC_015222.1 868167 869336 R TIGRFAM: Chorismate synthase; KEGG: net:Neut_1957 chorismate synthase; PFAM: Chorismate synthase; chorismate synthase complement(868167..869336) Nitrosomonas sp. AL212 10297465 YP_004294038.1 CDS NAL212_0955 NC_015222.1 869848 870048 R KEGG: nmu:Nmul_A1257 hypothetical protein; hypothetical protein complement(869848..870048) Nitrosomonas sp. AL212 10297467 YP_004294039.1 CDS NAL212_0956 NC_015222.1 870172 871086 R KEGG: nwa:Nwat_0101 hypothetical protein; hypothetical protein complement(870172..871086) Nitrosomonas sp. AL212 10297468 YP_004294040.1 CDS NAL212_0958 NC_015222.1 872567 872779 D KEGG: ehi:EHI_000260 RNA recognition motif domain containing protein; RNA recognition motif domain containing protein 872567..872779 Nitrosomonas sp. AL212 10297470 YP_004294041.1 CDS NAL212_0959 NC_015222.1 872943 873152 D KEGG: dya:Dyak_GE20898 GE20898 gene product from transcript GE20898-RA; hypothetical protein 872943..873152 Nitrosomonas sp. AL212 10297471 YP_004294042.1 CDS NAL212_0960 NC_015222.1 873242 873583 D KEGG: lla:L84260 hypothetical protein; hypothetical protein 873242..873583 Nitrosomonas sp. AL212 10297472 YP_004294043.1 CDS NAL212_0961 NC_015222.1 873729 874580 R PFAM: Endonuclease/exonuclease/phosphatase; KEGG: tbd:Tbd_2766 hypothetical protein; endonuclease/exonuclease/phosphatase complement(873729..874580) Nitrosomonas sp. AL212 10297473 YP_004294044.1 CDS NAL212_0962 NC_015222.1 874966 875589 R TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial; C-type lectin; KEGG: dsa:Desal_1919 C-type lectin domain protein; SMART: C-type lectin; PEP motif putative anchor domain-containing protein complement(874966..875589) Nitrosomonas sp. AL212 10297474 YP_004294045.1 CDS NAL212_0963 NC_015222.1 876006 876707 R KEGG: nmu:Nmul_A0946 putative glutathione S-transferase; putative glutathione S-transferase complement(876006..876707) Nitrosomonas sp. AL212 10297475 YP_004294046.1 CDS NAL212_0964 NC_015222.1 876843 877199 D PFAM: Helix-turn-helix, HxlR type; KEGG: nmu:Nmul_A0947 putative transcriptional regulator; HxlR family transcriptional regulator 876843..877199 Nitrosomonas sp. AL212 10297476 YP_004294047.1 CDS NAL212_0965 NC_015222.1 877262 878635 R PFAM: Ammonium transporter; KEGG: nmu:Nmul_A0516 Rh-like protein/ammonium transporter; ammonium transporter complement(877262..878635) Nitrosomonas sp. AL212 10297477 YP_004294048.1 CDS NAL212_0966 NC_015222.1 878888 879502 R KEGG: nmi:NMO_1071 hypothetical protein; hypothetical protein complement(878888..879502) Nitrosomonas sp. AL212 10297478 YP_004294049.1 CDS NAL212_0967 NC_015222.1 879978 880484 R PFAM: Uncharacterised protein domain CNP1; KEGG: nmu:Nmul_A1844 putative lipoprotein; hypothetical protein complement(879978..880484) Nitrosomonas sp. AL212 10297479 YP_004294050.1 CDS NAL212_0968 NC_015222.1 880481 882463 R PFAM: Protein of unknown function DUF3501; Cysteine-rich domain; KEGG: nmu:Nmul_A1846 putative ferredoxin; hypothetical protein complement(880481..882463) Nitrosomonas sp. AL212 10297480 YP_004294051.1 CDS NAL212_0969 NC_015222.1 882575 882994 R PFAM: Rubrerythrin; KEGG: nmu:Nmul_A1847 rubrerythrin; rubrerythrin complement(882575..882994) Nitrosomonas sp. AL212 10297481 YP_004294052.1 CDS NAL212_0970 NC_015222.1 883476 884621 D KEGG: nmu:Nmul_A1922 major facilitator transporter; major facilitator transporter 883476..884621 Nitrosomonas sp. AL212 10297482 YP_004294053.1 CDS NAL212_0971 NC_015222.1 884702 886120 D TIGRFAM: 3-isopropylmalate dehydratase, large subunit; KEGG: neu:NE0685 isopropylmalate isomerase large subunit; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; 3-isopropylmalate dehydratase large subunit 884702..886120 Nitrosomonas sp. AL212 10297483 YP_004294054.1 CDS NAL212_0972 NC_015222.1 886181 886819 D KEGG: nmu:Nmul_A1919 isopropylmalate isomerase small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: Aconitase A/isopropylmalate dehydratase small subunit, swivel; 3-isopropylmalate dehydratase small subunit 886181..886819 Nitrosomonas sp. AL212 10297484 YP_004294055.1 CDS NAL212_0973 NC_015222.1 886845 887906 D TIGRFAM: Isopropylmalate dehydrogenase; KEGG: nmu:Nmul_A1918 3-isopropylmalate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase; 3-isopropylmalate dehydrogenase 886845..887906 Nitrosomonas sp. AL212 10297485 YP_004294056.1 CDS NAL212_0974 NC_015222.1 888057 889169 D SMART: Semialdehyde dehydrogenase, NAD-binding; TIGRFAM: Aspartate-semialdehyde dehydrogenase, proteobacteria; KEGG: nmu:Nmul_A1917 aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD-binding; aspartate-semialdehyde dehydrogenase 888057..889169 Nitrosomonas sp. AL212 10297486 YP_004294057.1 CDS NAL212_0975 NC_015222.1 889384 891912 D TIGRFAM: Motility protein FimV, N-terminal; Motility protein FimV, C-terminal; KEGG: neu:NE0690 transmembrane protein; FimV N-terminal domain 889384..891912 Nitrosomonas sp. AL212 10297487 YP_004294058.1 CDS NAL212_0976 NC_015222.1 891956 892753 D TIGRFAM: Pseudouridine synthase I, TruA; HAMAP: Pseudouridine synthase I, TruA; KEGG: nmu:Nmul_A1914 tRNA pseudouridine synthase A; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain; tRNA pseudouridine synthase A 891956..892753 Nitrosomonas sp. AL212 10297488 YP_004294059.1 CDS NAL212_0977 NC_015222.1 892780 893397 D KEGG: nmu:Nmul_A1913 N-(5'-phosphoribosyl)anthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); phosphoribosylanthranilate isomerase 892780..893397 Nitrosomonas sp. AL212 10297489 YP_004294060.1 CDS NAL212_0978 NC_015222.1 893394 894593 D PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; TIGRFAM: Tryptophan synthase, beta chain; HAMAP: Tryptophan synthase beta chain/beta chain-like; KEGG: neu:NE0693 tryptophan synthase subunit beta; tryptophan synthase subunit beta 893394..894593 Nitrosomonas sp. AL212 10297490 YP_004294061.1 CDS NAL212_0979 NC_015222.1 894800 895663 D TIGRFAM: Tryptophan synthase, alpha chain; KEGG: nmu:Nmul_A1911 tryptophan synthase subunit alpha; PFAM: Tryptophan synthase, alpha chain; tryptophan synthase subunit alpha 894800..895663 Nitrosomonas sp. AL212 10297491 YP_004294062.1 CDS NAL212_0980 NC_015222.1 895691 896560 D TIGRFAM: Acetyl-CoA carboxylase carboxyl transferase, beta subunit; KEGG: net:Neut_1154 acetyl-CoA carboxylase, carboxyl transferase, beta subunit; PFAM: Carboxyl transferase; acetyl-CoA carboxylase, carboxyl transferase subunit beta 895691..896560 Nitrosomonas sp. AL212 10297492 YP_004294063.1 CDS NAL212_0981 NC_015222.1 896581 897879 D TIGRFAM: Folylpolyglutamate synthetase; KEGG: nmu:Nmul_A1909 FolC bifunctional protein; PFAM: Mur ligase, central; Mur ligase, C-terminal; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 896581..897879 Nitrosomonas sp. AL212 10297493 YP_004294064.1 CDS NAL212_0982 NC_015222.1 897896 898603 D PFAM: Sporulation-related domain; KEGG: net:Neut_1156 sporulation domain-containing protein; sporulation domain-containing protein 897896..898603 Nitrosomonas sp. AL212 10297494 YP_004294065.1 CDS NAL212_0983 NC_015222.1 898688 899194 D PFAM: Colicin V production, CvpA; KEGG: nmu:Nmul_A1907 colicin V production protein; colicin V production protein 898688..899194 Nitrosomonas sp. AL212 10297495 YP_004294066.1 CDS NAL212_0984 NC_015222.1 899305 900825 D TIGRFAM: Amidophosphoribosyl transferase; KEGG: nmu:Nmul_A1906 amidophosphoribosyltransferase; PFAM: Glutamine amidotransferase, class-II; Phosphoribosyltransferase; amidophosphoribosyltransferase 899305..900825 Nitrosomonas sp. AL212 10297496 YP_004294067.1 CDS NAL212_0985 NC_015222.1 900933 902111 D KEGG: neu:NE0700 O-succinylhomoserine sulfhydrylase; TIGRFAM: O-succinylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; O-succinylhomoserine sulfhydrylase 900933..902111 Nitrosomonas sp. AL212 10297497 YP_004294068.1 CDS NAL212_0986 NC_015222.1 902168 902659 R KEGG: nmu:Nmul_A1885 peptidylprolyl isomerase; PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; peptidyl-prolyl isomerase complement(902168..902659) Nitrosomonas sp. AL212 10297498 YP_004294069.1 CDS NAL212_0987 NC_015222.1 902690 903271 R KEGG: neu:NE0042 cyclophilin-type peptidyl-prolyl cis-trans isomerase; PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; peptidyl-prolyl isomerase complement(902690..903271) Nitrosomonas sp. AL212 10297499 YP_004294070.1 CDS NAL212_0988 NC_015222.1 903413 904792 D KEGG: nmu:Nmul_A1881 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase, class Ia; Cysteinyl-tRNA synthetase, class Ia, DALR; manually curated; TIGRFAM: Cysteinyl-tRNA synthetase, class Ia; SMART: Cysteinyl-tRNA synthetase, class Ia, DALR; cysteinyl-tRNA synthetase 903413..904792 Nitrosomonas sp. AL212 10297500 YP_004294071.1 CDS NAL212_0989 NC_015222.1 904811 905560 R KEGG: neu:NE0044 hypothetical protein; hypothetical protein complement(904811..905560) Nitrosomonas sp. AL212 10297501 YP_004294072.1 CDS NAL212_0990 NC_015222.1 905581 906519 R PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: neu:NE0045 flagellar motor protein MotB; OmpA/MotB domain-containing protein complement(905581..906519) Nitrosomonas sp. AL212 10297502 YP_004294073.1 CDS NAL212_0991 NC_015222.1 906570 907430 R KEGG: net:Neut_0188 flagellar motor protein MotA; TIGRFAM: Flagellar motor stator, MotA; PFAM: MotA/TolQ/ExbB proton channel; flagellar motor stator protein MotA complement(906570..907430) Nitrosomonas sp. AL212 10297503 YP_004294074.1 CDS NAL212_0992 NC_015222.1 907666 909477 R PFAM: ABC transporter, transmembrane domain; ABC transporter-like; KEGG: nmu:Nmul_A0682 ABC transporter related; SMART: ATPase, AAA+ type, core; xenobiotic-transporting ATPase complement(907666..909477) Nitrosomonas sp. AL212 10297504 YP_004294075.1 CDS NAL212_0993 NC_015222.1 909500 910777 R KEGG: lbf:LBF_0870 NRAMP-family transporter; NRAMP-family transporter complement(909500..910777) Nitrosomonas sp. AL212 10297505 YP_004294076.1 CDS NAL212_0994 NC_015222.1 910998 911402 D KEGG: neu:NE1916 hypothetical protein; hypothetical protein 910998..911402 Nitrosomonas sp. AL212 10297506 YP_004294077.1 CDS NAL212_0995 NC_015222.1 911399 911701 R KEGG: slt:Slit_0989 hypothetical protein; hypothetical protein complement(911399..911701) Nitrosomonas sp. AL212 10297507 YP_004294078.1 CDS NAL212_0996 NC_015222.1 911742 913460 R PFAM: Cation/H+ exchanger; Regulator of K+ conductance, N-terminal; KEGG: pna:Pnap_0633 sodium/hydrogen exchanger; sodium/hydrogen exchanger complement(911742..913460) Nitrosomonas sp. AL212 10297508 YP_004294079.1 CDS NAL212_0997 NC_015222.1 913551 915419 R KEGG: shi:Shel_00990 hypothetical protein; hypothetical protein complement(913551..915419) Nitrosomonas sp. AL212 10297509 YP_004294080.1 CDS NAL212_0998 NC_015222.1 915629 917980 R KEGG: neu:NE1277 hypothetical protein; hypothetical protein complement(915629..917980) Nitrosomonas sp. AL212 10297510 YP_004294081.1 CDS NAL212_0999 NC_015222.1 918249 918917 R KEGG: pyo:PY05175 hypothetical protein; hypothetical protein complement(918249..918917) Nitrosomonas sp. AL212 10297511 YP_004294082.1 CDS NAL212_1000 NC_015222.1 919297 920379 D PFAM: ADP-ribosylation/Crystallin J1; KEGG: neu:NE0396 hypothetical protein; ADP-ribosylation/Crystallin J1 919297..920379 Nitrosomonas sp. AL212 10297512 YP_004294083.1 CDS NAL212_1003 NC_015222.1 922577 922876 R PFAM: Transposase IS3/IS911family; KEGG: rms:RMA_0745 transposase; transposase IS3/IS911 family protein complement(922577..922876) Nitrosomonas sp. AL212 10297515 YP_004294084.1 CDS NAL212_1004 NC_015222.1 922936 923667 R PFAM: Plasmid recombination enzyme; KEGG: tbd:Tbd_2002 hypothetical protein; plasmid recombination protein complement(922936..923667) Nitrosomonas sp. AL212 10297516 YP_004294085.1 CDS NAL212_1005 NC_015222.1 923671 923811 R hypothetical protein complement(923671..923811) Nitrosomonas sp. AL212 10297517 YP_004294086.1 CDS NAL212_1006 NC_015222.1 923804 924100 R KEGG: pna:Pnap_2648 hypothetical protein; hypothetical protein complement(923804..924100) Nitrosomonas sp. AL212 10297518 YP_004294087.1 CDS NAL212_1007 NC_015222.1 924102 924347 R KEGG: meh:M301_1799 phage transcriptional regulator, AlpA; hypothetical protein complement(924102..924347) Nitrosomonas sp. AL212 10297519 YP_004294088.1 CDS NAL212_1008 NC_015222.1 924460 925200 R KEGG: msy:MS53_0495 hypothetical protein; hypothetical protein complement(924460..925200) Nitrosomonas sp. AL212 10297520 YP_004294089.1 CDS NAL212_1009 NC_015222.1 925203 926408 R PFAM: Integrase, catalytic core, phage; KEGG: rso:RSc1871 putative integrase prophage protein; integrase family protein complement(925203..926408) Nitrosomonas sp. AL212 10297521 YP_004294090.1 CDS NAL212_1010 NC_015222.1 926875 927174 D PFAM: Transposase IS3/IS911family; KEGG: rms:RMA_0745 transposase; transposase IS3/IS911 family protein 926875..927174 Nitrosomonas sp. AL212 10297523 YP_004294091.1 CDS NAL212_1011 NC_015222.1 927206 928360 D PFAM: Integrase, catalytic core; KEGG: bac:BamMC406_6587 integrase catalytic region; integrase catalytic region 927206..928360 Nitrosomonas sp. AL212 10297524 YP_004294092.1 CDS NAL212_1013 NC_015222.1 929603 930070 R PFAM: MEKHLA; KEGG: nde:NIDE4343 hypothetical protein; MEKHLA domain-containing protein complement(929603..930070) Nitrosomonas sp. AL212 10297527 YP_004294093.1 CDS NAL212_1014 NC_015222.1 930170 931768 R TIGRFAM: L-aspartate oxidase; KEGG: nmu:Nmul_A1743 L-aspartate oxidase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal; L-aspartate oxidase complement(930170..931768) Nitrosomonas sp. AL212 10297528 YP_004294094.1 CDS NAL212_1015 NC_015222.1 932047 932646 D KEGG: nmu:Nmul_A1746 RNA polymerase sigma factor RpoE; TIGRFAM: RNA polymerase sigma-70 RpoE type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; ECF subfamily RNA polymerase sigma-24 subunit 932047..932646 Nitrosomonas sp. AL212 10297529 YP_004294095.1 CDS NAL212_1016 NC_015222.1 932648 933196 D PFAM: Anti sigma-E protein RseA, N-terminal; KEGG: nmu:Nmul_A1747 anti sigma-E protein RseA; anti sigma-E protein, RseA 932648..933196 Nitrosomonas sp. AL212 10297530 YP_004294096.1 CDS NAL212_1017 NC_015222.1 933193 934179 D PFAM: MucB/RseB; KEGG: nmu:Nmul_A1748 sigma E regulatory protein, MucB/RseB; sigma E regulatory protein MucB/RseB 933193..934179 Nitrosomonas sp. AL212 10297531 YP_004294097.1 CDS NAL212_1018 NC_015222.1 934337 935752 D SMART: PDZ/DHR/GLGF; TIGRFAM: Peptidase S1C, Do; KEGG: net:Neut_1783 protease Do; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; protease Do 934337..935752 Nitrosomonas sp. AL212 10297532 YP_004294098.1 CDS NAL212_1019 NC_015222.1 935736 936026 D PFAM: Glutaredoxin-like; KEGG: net:Neut_1782 glutaredoxin 2; glutaredoxin 2 935736..936026 Nitrosomonas sp. AL212 10297533 YP_004294099.1 CDS NAL212_1020 NC_015222.1 936129 937922 D TIGRFAM: GTP-binding protein LepA; Small GTP-binding protein; PFAM: GTP-binding protein LepA, C-terminal; Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal; KEGG: nmu:Nmul_A1751 GTP-binding protein LepA; SMART: Translation elongation factor EFG/EF2, C-terminal; GTP-binding protein LepA 936129..937922 Nitrosomonas sp. AL212 10297534 YP_004294100.1 CDS NAL212_1021 NC_015222.1 938029 938832 D TIGRFAM: Peptidase S26A, signal peptidase I; KEGG: net:Neut_1780 signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; Peptidase S26, conserved region; signal peptidase I 938029..938832 Nitrosomonas sp. AL212 10297535 YP_004294101.1 CDS NAL212_1022 NC_015222.1 938859 939236 D KEGG: neu:NE2325 transmembrane protein; transmembrane protein 938859..939236 Nitrosomonas sp. AL212 10297536 YP_004294102.1 CDS NAL212_1023 NC_015222.1 939243 939956 D SMART: Ribonuclease III; Double-stranded RNA-binding; TIGRFAM: Ribonuclease III, bacterial; KEGG: nmu:Nmul_A1753 ribonuclease III; PFAM: Ribonuclease III; Double-stranded RNA-binding; ribonuclease III 939243..939956 Nitrosomonas sp. AL212 10297537 YP_004294103.1 CDS NAL212_1024 NC_015222.1 940002 940895 D KEGG: neu:NE2323 GTP-binding protein Era; TIGRFAM: GTP-binding protein Era; Small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; K Homology, type 2; GTP-binding protein Era 940002..940895 Nitrosomonas sp. AL212 10297538 YP_004294104.1 CDS NAL212_1025 NC_015222.1 940934 941659 D TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; KEGG: nmu:Nmul_A1759 pyridoxine 5'-phosphate synthase; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; pyridoxal phosphate biosynthetic protein PdxJ 940934..941659 Nitrosomonas sp. AL212 10297539 YP_004294105.1 CDS NAL212_1026 NC_015222.1 941656 942033 D KEGG: nmu:Nmul_A1760 4'-phosphopantetheinyl transferase; TIGRFAM: Holo-[acyl carrier protein] synthase; Phosphopantethiene-protein transferase; PFAM: 4'-phosphopantetheinyl transferase; holo-ACP synthase 941656..942033 Nitrosomonas sp. AL212 10297540 YP_004294106.1 CDS NAL212_1027 NC_015222.1 942036 943088 D PFAM: Glycoside hydrolase, family 3, N-terminal; KEGG: slt:Slit_1287 glycoside hydrolase family 3 domain protein; glycoside hydrolase family protein 942036..943088 Nitrosomonas sp. AL212 10297541 YP_004294107.1 CDS NAL212_1028 NC_015222.1 943177 944637 D TIGRFAM: Dihydrolipoamide dehydrogenase; KEGG: nmu:Nmul_A0855 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; dihydrolipoamide dehydrogenase 943177..944637 Nitrosomonas sp. AL212 10297542 YP_004294108.1 CDS NAL212_1029 NC_015222.1 944685 945134 R KEGG: net:Neut_0544 hypothetical protein; hypothetical protein complement(944685..945134) Nitrosomonas sp. AL212 10297543 YP_004294109.1 CDS NAL212_1030 NC_015222.1 945916 946416 D PFAM: Uncharacterised protein family CreA; KEGG: net:Neut_0213 CreA family protein; CreA family protein 945916..946416 Nitrosomonas sp. AL212 10297545 YP_004294110.1 CDS NAL212_1031 NC_015222.1 946529 947782 D KEGG: nmu:Nmul_A2642 glutamyl-tRNA reductase; TIGRFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase; PFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; glutamyl-tRNA reductase 946529..947782 Nitrosomonas sp. AL212 10297546 YP_004294111.1 CDS NAL212_1032 NC_015222.1 947779 948858 D TIGRFAM: Peptide chain release factor 1; PFAM: Peptide chain release factor class I/class II; Peptide chain release factor; KEGG: nmu:Nmul_A2641 peptide chain release factor 1; SMART: Peptide chain release factor; peptide chain release factor 1 947779..948858 Nitrosomonas sp. AL212 10297547 YP_004294112.1 CDS NAL212_1033 NC_015222.1 948891 949727 D TIGRFAM: Protein-(glutamine-N5) methyltransferase, release factor-specific; Modification methylase HemK; KEGG: nmu:Nmul_A2640 HemK family modification methylase; PFAM: Methyltransferase small; protein-(glutamine-N5) methyltransferase 948891..949727 Nitrosomonas sp. AL212 10297548 YP_004294113.1 CDS NAL212_1034 NC_015222.1 949831 950139 D KEGG: nmu:Nmul_A2639 glutaredoxin-like protein; TIGRFAM: Monothiol glutaredoxin-related; PFAM: Glutaredoxin; glutaredoxin-like protein 949831..950139 Nitrosomonas sp. AL212 10297549 YP_004294114.1 CDS NAL212_1035 NC_015222.1 950218 950637 R PFAM: SNARE associated Golgi protein; KEGG: nmu:Nmul_A2638 putative inner membrane protein; hypothetical protein complement(950218..950637) Nitrosomonas sp. AL212 10297550 YP_004294115.1 CDS NAL212_1036 NC_015222.1 951085 951723 R KEGG: rsk:RSKD131_2511 hemolysin-type calcium-binding toxin; hemolysin-type calcium-binding toxin complement(951085..951723) Nitrosomonas sp. AL212 10297551 YP_004294116.1 CDS NAL212_1037 NC_015222.1 951915 953471 D KEGG: mmw:Mmwyl1_0245 cytidyltransferase-like protein; TIGRFAM: Cytidyltransferase-related; PFAM: Cytidylyltransferase; LicD-like; cytidyltransferase-related domain-containing protein 951915..953471 Nitrosomonas sp. AL212 10297552 YP_004294117.1 CDS NAL212_1038 NC_015222.1 953575 954750 D PFAM: WD40-like Beta Propeller; Protein of unknown function DUF839; KEGG: tcu:Tcur_2162 protein of unknown function DUF839; WD40-like beta Propeller containing protein 953575..954750 Nitrosomonas sp. AL212 10297553 YP_004294118.1 CDS NAL212_1039 NC_015222.1 954823 955440 R KEGG: nmu:Nmul_A1597 hypothetical protein; hypothetical protein complement(954823..955440) Nitrosomonas sp. AL212 10297554 YP_004294119.1 CDS NAL212_1040 NC_015222.1 955491 956606 R PFAM: Protein of unknown function DUF1624; KEGG: cps:CPS_0458 hypothetical protein; hypothetical protein complement(955491..956606) Nitrosomonas sp. AL212 10297555 YP_004294120.1 CDS NAL212_1041 NC_015222.1 956666 957775 R TIGRFAM: Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase; PFAM: Aspartate/glutamate/uridylate kinase; Pseudouridine synthase/archaeosine transglycosylase; KEGG: nmu:Nmul_A1843 gamma-glutamyl kinase; SMART: Pseudouridine synthase/archaeosine transglycosylase; glutamate 5-kinase complement(956666..957775) Nitrosomonas sp. AL212 10297556 YP_004294121.1 CDS NAL212_1042 NC_015222.1 957769 958833 R KEGG: nmu:Nmul_A1817 GTPase ObgE; TIGRFAM: GTP-binding protein Obg/CgtA; PFAM: GTP1/OBG subdomain; GTP-binding protein, HSR1-related; GTP-binding protein Obg/CgtA complement(957769..958833) Nitrosomonas sp. AL212 10297557 YP_004294122.1 CDS NAL212_1043 NC_015222.1 958942 959199 R KEGG: nmu:Nmul_A1816 50S ribosomal protein L27; TIGRFAM: Ribosomal protein L27; PFAM: Ribosomal protein L27; 50S ribosomal protein L27 complement(958942..959199) Nitrosomonas sp. AL212 10297558 YP_004294123.1 CDS NAL212_1044 NC_015222.1 959211 959522 R KEGG: nmu:Nmul_A1815 50S ribosomal protein L21; TIGRFAM: Ribosomal protein L21; PFAM: Ribosomal protein L21; 50S ribosomal protein L21 complement(959211..959522) Nitrosomonas sp. AL212 10297559 YP_004294124.1 CDS NAL212_1045 NC_015222.1 959670 960638 D manually curated; KEGG: net:Neut_0825 farnesyltranstransferase; PFAM: Polyprenyl synthetase; Trans-hexaprenyltranstransferase 959670..960638 Nitrosomonas sp. AL212 10297560 YP_004294125.1 CDS NAL212_1046 NC_015222.1 961008 964676 D TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; Signal transduction response regulator, receiver domain; PAS fold-4; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold-3; KEGG: rru:Rru_A2406 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: ATPase-like, ATP-binding domain; Signal transduction response regulator, receiver domain; PAC motif; PAS; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; multi-sensor signal transduction histidine kinase 961008..964676 Nitrosomonas sp. AL212 10297561 YP_004294126.1 CDS NAL212_1047 NC_015222.1 964698 965120 D KEGG: azo:azo3382 putative two-component system regulatory protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; response regulator receiver protein 964698..965120 Nitrosomonas sp. AL212 10297562 YP_004294127.1 CDS NAL212_1048 NC_015222.1 965126 968536 D TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; PAS fold; Signal transduction response regulator, receiver domain; PAS fold-3; Diguanylate cyclase, predicted; KEGG: neu:NE1700 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS; PAC motif; Signal transduction response regulator, receiver domain; GAF; response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 965126..968536 Nitrosomonas sp. AL212 10297563 YP_004294128.1 CDS NAL212_1049 NC_015222.1 968520 969158 D KEGG: nwa:Nwat_2651 hypothetical protein; hypothetical protein 968520..969158 Nitrosomonas sp. AL212 10297564 YP_004294129.1 CDS NAL212_1050 NC_015222.1 969246 970979 R PFAM: Domain of unknown function DUF87; KEGG: tmz:Tmz1t_0482 protein of unknown function DUF87; hypothetical protein complement(969246..970979) Nitrosomonas sp. AL212 10297565 YP_004294130.1 CDS NAL212_1051 NC_015222.1 970990 972003 R KEGG: neu:NE2094 hypothetical protein; hypothetical protein complement(970990..972003) Nitrosomonas sp. AL212 10297566 YP_004294131.1 CDS NAL212_1052 NC_015222.1 972079 973419 R PFAM: Protein of unknown function DUF2130; KEGG: llo:LLO_2961 coiled-coil protein; hypothetical protein complement(972079..973419) Nitrosomonas sp. AL212 10297567 YP_004294132.1 CDS NAL212_1054 NC_015222.1 973839 974018 R hypothetical protein complement(973839..974018) Nitrosomonas sp. AL212 10297569 YP_004294133.1 CDS NAL212_1055 NC_015222.1 974193 975200 D PFAM: Haemolysin-type calcium-binding repeat; KEGG: ppd:Ppro_2370 Ig family protein; hemolysin-type calcium-binding protein 974193..975200 Nitrosomonas sp. AL212 10297570 YP_004294134.1 CDS NAL212_1056 NC_015222.1 975463 975972 D KEGG: bam:Bamb_1619 major facilitator transporter; hypothetical protein 975463..975972 Nitrosomonas sp. AL212 10297571 YP_004294135.1 CDS NAL212_1057 NC_015222.1 976270 977325 D TIGRFAM: Queuosine biosynthesis protein; HAMAP: Queuosine biosynthesis protein; KEGG: neu:NE1140 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 976270..977325 Nitrosomonas sp. AL212 10297572 YP_004294136.1 CDS NAL212_1058 NC_015222.1 977322 978407 D TIGRFAM: Queuine tRNA-ribosyltransferase; Queuine/other tRNA-ribosyltransferase; KEGG: nmu:Nmul_A2429 queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; queuine tRNA-ribosyltransferase 977322..978407 Nitrosomonas sp. AL212 10297573 YP_004294137.1 CDS NAL212_1059 NC_015222.1 978454 978912 D KEGG: net:Neut_1432 preprotein translocase, YajC subunit; TIGRFAM: Preprotein translocase YajC; PFAM: Preprotein translocase YajC; preprotein translocase subunit YajC 978454..978912 Nitrosomonas sp. AL212 10297574 YP_004294138.1 CDS NAL212_1060 NC_015222.1 978998 981088 D KEGG: nmu:Nmul_A2427 preprotein translocase subunit SecD; TIGRFAM: SecD export membrane protein; SecD/SecF/SecDF export membrane protein, bacteria; PFAM: Preprotein translocase, SecD/SecF/SecDF; SecD/SecF/SecDF export membrane protein, GG motif, N-terminal; protein-export membrane protein SecD 978998..981088 Nitrosomonas sp. AL212 10297575 YP_004294139.1 CDS NAL212_1061 NC_015222.1 981110 982048 D KEGG: nmu:Nmul_A2426 preprotein translocase subunit SecF; TIGRFAM: SecF protein; SecD/SecF/SecDF export membrane protein, bacteria; PFAM: Preprotein translocase, SecD/SecF/SecDF; SecD/SecF/SecDF export membrane protein, GG motif, N-terminal; protein-export membrane protein SecF 981110..982048 Nitrosomonas sp. AL212 10297576 YP_004294140.1 CDS NAL212_1062 NC_015222.1 982375 982803 D KEGG: spl:Spea_3669 hypothetical protein; hypothetical protein 982375..982803 Nitrosomonas sp. AL212 10297577 YP_004294141.1 CDS NAL212_1065 NC_015222.1 983954 985948 R PFAM: IstB-like ATP-binding protein; Integrase, catalytic core; KEGG: mms:mma_2809 transposase IstA; IstB domain-containing protein ATP-binding protein complement(983954..985948) Nitrosomonas sp. AL212 10297580 YP_004294142.1 CDS NAL212_1069 NC_015222.1 987059 987163 R hypothetical protein complement(987059..987163) Nitrosomonas sp. AL212 10297584 YP_004294143.1 CDS NAL212_1071 NC_015222.1 987920 988216 R PFAM: Cell division protein ZapA-like; KEGG: neu:NE1890 hypothetical protein; hypothetical protein complement(987920..988216) Nitrosomonas sp. AL212 10297587 YP_004294144.1 CDS NAL212_1072 NC_015222.1 988209 988406 R KEGG: neu:NE1891 hypothetical protein; hypothetical protein complement(988209..988406) Nitrosomonas sp. AL212 10297588 YP_004294145.1 CDS NAL212_1073 NC_015222.1 988791 989990 R KEGG: neu:NE2283 hypothetical protein; PFAM: ZipA, C-terminal FtsZ-binding domain; SMART: ZipA, C-terminal FtsZ-binding domain; ZipA FtsZ-binding region protein complement(988791..989990) Nitrosomonas sp. AL212 10297589 YP_004294146.1 CDS NAL212_1074 NC_015222.1 990064 993615 R KEGG: nmu:Nmul_A0645 chromosome segregation protein SMC; TIGRFAM: Chromosome segregation protein SMC; PFAM: RecF/RecN/SMC; SMCs flexible hinge; chromosome segregation protein SMC complement(990064..993615) Nitrosomonas sp. AL212 10297590 YP_004294147.1 CDS NAL212_1075 NC_015222.1 993713 994132 D TIGRFAM: Nitrile oxidoreductase, NADPH-dependent, QueF; KEGG: net:Neut_2123 7-cyano-7-deazaguanine reductase; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; 7-cyano-7-deazaguanine reductase 993713..994132 Nitrosomonas sp. AL212 10297591 YP_004294148.1 CDS NAL212_1076 NC_015222.1 994287 995579 D KEGG: neu:NE2421 LysM motif-containing protein; PFAM: Lytic transglycosylase-like, catalytic; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; Lytic transglycosylase catalytic 994287..995579 Nitrosomonas sp. AL212 10297592 YP_004294149.1 CDS NAL212_1077 NC_015222.1 995627 997087 R PFAM: Peptidase M17, leucyl aminopeptidase, C-terminal; KEGG: neu:NE0569 cytosol aminopeptidase; peptidase M17 leucyl aminopeptidase domain-containing protein complement(995627..997087) Nitrosomonas sp. AL212 10297593 YP_004294150.1 CDS NAL212_1078 NC_015222.1 997256 998050 D TIGRFAM: Thymidylate synthase; KEGG: nmu:Nmul_A1962 thymidylate synthase; PFAM: Thymidylate synthase; thymidylate synthase 997256..998050 Nitrosomonas sp. AL212 10297594 YP_004294151.1 CDS NAL212_1079 NC_015222.1 998047 998550 D PFAM: Dihydrofolate reductase domain; KEGG: nmu:Nmul_A1963 dihydrofolate reductase; dihydrofolate reductase subunit 998047..998550 Nitrosomonas sp. AL212 10297595 YP_004294152.1 CDS NAL212_1080 NC_015222.1 998681 999856 R KEGG: nmu:Nmul_A1964 Orn/DAP/Arg decarboxylase 2; PFAM: Orn/DAP/Arg decarboxylase 2, N-terminal; Orn/DAP/Arg decarboxylase 2, C-terminal; Ornithine decarboxylase complement(998681..999856) Nitrosomonas sp. AL212 10297596 YP_004294153.1 CDS NAL212_1081 NC_015222.1 1000162 1001394 R TIGRFAM: Conserved hypothetical protein CHP03790; KEGG: nmu:Nmul_A2461 hypothetical protein; hypothetical protein complement(1000162..1001394) Nitrosomonas sp. AL212 10297597 YP_004294154.1 CDS NAL212_1082 NC_015222.1 1001452 1002018 R TIGRFAM: Deoxycytidine triphosphate deaminase; KEGG: net:Neut_1923 deoxycytidine triphosphate deaminase; PFAM: DeoxyUTP pyrophosphatase domain; deoxycytidine triphosphate deaminase complement(1001452..1002018) Nitrosomonas sp. AL212 10297598 YP_004294155.1 CDS NAL212_1083 NC_015222.1 1002033 1003121 R PFAM: ATPase-like, ParA/MinD; Domain of unknown function DUF59; KEGG: neu:NE0624 hypothetical protein; ParA/MinD-like ATPase complement(1002033..1003121) Nitrosomonas sp. AL212 10297599 YP_004294156.1 CDS NAL212_1084 NC_015222.1 1003247 1005352 D TIGRFAM: Methionyl-tRNA synthetase, class Ia; Methionyl-tRNA synthetase, class Ia, beta subunit, C-terminal; KEGG: neu:NE0625 methionyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class I (M); tRNA-binding domain; methionyl-tRNA synthetase 1003247..1005352 Nitrosomonas sp. AL212 10297600 YP_004294157.1 CDS NAL212_1085 NC_015222.1 1005361 1005726 D KEGG: lpp:plpp0126 hypothetical protein; hypothetical protein 1005361..1005726 Nitrosomonas sp. AL212 10297601 YP_004294158.1 CDS NAL212_1086 NC_015222.1 1005751 1006500 D KEGG: bpt:Bpet2896 hypothetical protein; TIGRFAM: pyridoxal phosphate-dependent enzyme, YBL036C type; PFAM: Alanine racemase, N-terminal; hypothetical protein 1005751..1006500 Nitrosomonas sp. AL212 10297602 YP_004294159.1 CDS NAL212_1087 NC_015222.1 1006987 1007694 D PFAM: FG-GAP; KEGG: npu:Npun_F1457 putative outer membrane adhesin like proteiin; FG-GAP repeat-containing protein 1006987..1007694 Nitrosomonas sp. AL212 10297603 YP_004294160.1 CDS NAL212_1088 NC_015222.1 1007764 1009038 D PFAM: FG-GAP; Haemolysin-type calcium-binding repeat; KEGG: syf:Synpcc7942_1337 integrins alpha chain; FG-GAP repeat-containing protein 1007764..1009038 Nitrosomonas sp. AL212 10297604 YP_004294161.1 CDS NAL212_1089 NC_015222.1 1009258 1010244 R KEGG: nmu:Nmul_A0564 transmembrane protein; hypothetical protein complement(1009258..1010244) Nitrosomonas sp. AL212 10297605 YP_004294162.1 CDS NAL212_1090 NC_015222.1 1010289 1011239 R TIGRFAM: Homoserine kinase ThrB; KEGG: nmu:Nmul_A0565 homoserine kinase; PFAM: Aminoglycoside phosphotransferase; homoserine kinase complement(1010289..1011239) Nitrosomonas sp. AL212 10297606 YP_004294163.1 CDS NAL212_1091 NC_015222.1 1011318 1011716 R PFAM: Protein of unknown function DUF2782; KEGG: net:Neut_0776 hypothetical protein; hypothetical protein complement(1011318..1011716) Nitrosomonas sp. AL212 10297607 YP_004294164.1 CDS NAL212_1092 NC_015222.1 1011773 1012498 R KEGG: net:Neut_0777 hypothetical protein; TIGRFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG; PFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG; hypothetical protein complement(1011773..1012498) Nitrosomonas sp. AL212 10297608 YP_004294165.1 CDS NAL212_1093 NC_015222.1 1012512 1015262 D TIGRFAM: DNA polymerase 1; PFAM: DNA-directed DNA polymerase, family A, palm domain; 3'-5' exonuclease; 5'-3' exonuclease, alpha-helical arch, N-terminal; 5'-3' exonuclease, SAM-fold domain; KEGG: nmu:Nmul_A0568 DNA polymerase I; SMART: 5'-3' exonuclease, N-terminal; DNA-directed DNA polymerase, family A, palm domain; 3'-5' exonuclease; Helix-hairpin-helix motif, class 2; DNA polymerase I 1012512..1015262 Nitrosomonas sp. AL212 10297609 YP_004294166.1 CDS NAL212_1094 NC_015222.1 1015296 1017809 R TIGRFAM: Ribonuclease E/G; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; Ribosomal protein S1, RNA-binding domain; KEGG: net:Neut_1707 ribonuclease, Rne/Rng family protein; SMART: RNA-binding domain, S1; ribonuclease, Rne/Rng family complement(1015296..1017809) Nitrosomonas sp. AL212 10297610 YP_004294167.1 CDS NAL212_1095 NC_015222.1 1018247 1019227 D TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: neu:NE1456 ribosomal large subunit pseudouridine synthase C; SMART: RNA-binding S4; RluA family pseudouridine synthase 1018247..1019227 Nitrosomonas sp. AL212 10297611 YP_004294168.1 CDS NAL212_1096 NC_015222.1 1019277 1019843 R KEGG: nmu:Nmul_A1973 arylesterase; PFAM: Lipase, GDSL; arylesterase complement(1019277..1019843) Nitrosomonas sp. AL212 10297612 YP_004294169.1 CDS NAL212_1097 NC_015222.1 1019920 1020609 D SMART: ATPase, AAA+ type, core; manually curated; KEGG: nmu:Nmul_A1972 ABC transporter related; PFAM: ABC transporter-like; phosphonate-transporting ATPase 1019920..1020609 Nitrosomonas sp. AL212 10297613 YP_004294170.1 CDS NAL212_1098 NC_015222.1 1020672 1023182 D PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: nmu:Nmul_A0948 hypothetical protein; hypothetical protein 1020672..1023182 Nitrosomonas sp. AL212 10297614 YP_004294171.1 CDS NAL212_1099 NC_015222.1 1023187 1024401 D TIGRFAM: Putative oxygen-independent coproporphyrinogen III oxidase; PFAM: HemN, C-terminal; Radical SAM; KEGG: nmu:Nmul_A0068 coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase 1023187..1024401 Nitrosomonas sp. AL212 10297615 YP_004294172.1 CDS NAL212_1100 NC_015222.1 1024426 1025229 D PFAM: Formate/nitrite transporter; KEGG: pjd:Pjdr2_5915 formate/nitrite transporter; formate/nitrite transporter 1024426..1025229 Nitrosomonas sp. AL212 10297616 YP_004294173.1 CDS NAL212_1101 NC_015222.1 1025294 1025785 D KEGG: xca:xccb100_1049 hypothetical protein; hypothetical protein 1025294..1025785 Nitrosomonas sp. AL212 10297617 YP_004294174.1 CDS NAL212_1102 NC_015222.1 1025883 1026329 D KEGG: nmu:Nmul_A1469 hypothetical protein; hypothetical protein 1025883..1026329 Nitrosomonas sp. AL212 10297618 YP_004294175.1 CDS NAL212_1103 NC_015222.1 1026313 1026930 D KEGG: nmu:Nmul_A1468 hypothetical protein; hypothetical protein 1026313..1026930 Nitrosomonas sp. AL212 10297619 YP_004294176.1 CDS NAL212_1104 NC_015222.1 1027048 1027776 R TIGRFAM: Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; KEGG: net:Neut_2082 two component transcriptional regulator, winged helix family protein; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; winged helix family two component transcriptional regulator PhoB complement(1027048..1027776) Nitrosomonas sp. AL212 10297620 YP_004294177.1 CDS NAL212_1105 NC_015222.1 1028072 1029898 R TIGRFAM: Oxaloacetate decarboxylase, alpha subunit; KEGG: alv:Alvin_1668 oxaloacetate decarboxylase alpha subunit; PFAM: Carboxylase, conserved domain; Pyruvate carboxyltransferase; Biotin/lipoyl attachment; oxaloacetate decarboxylase subunit alpha complement(1028072..1029898) Nitrosomonas sp. AL212 10297621 YP_004294178.1 CDS NAL212_1106 NC_015222.1 1029928 1031349 R SMART: Biotin carboxylase, C-terminal; TIGRFAM: Acetyl-CoA carboxylase, biotin carboxylase; KEGG: alv:Alvin_1669 acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Biotin carboxylase, C-terminal; Carbamoyl-phosphate synthase, large subunit, N-terminal; acetyl-CoA carboxylase, biotin carboxylase complement(1029928..1031349) Nitrosomonas sp. AL212 10297622 YP_004294179.1 CDS NAL212_1107 NC_015222.1 1031640 1032911 D TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: tmz:Tmz1t_1906 O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; O-acetylhomoserine/O-acetylserine sulfhydrylase 1031640..1032911 Nitrosomonas sp. AL212 10297623 YP_004294180.1 CDS NAL212_1108 NC_015222.1 1032977 1033384 R PFAM: SEC-C motif; KEGG: dar:Daro_3857 SecC motif-containing protein; SEC-C motif domain-containing protein complement(1032977..1033384) Nitrosomonas sp. AL212 10297624 YP_004294181.1 CDS NAL212_1109 NC_015222.1 1033452 1034606 D KEGG: app:CAP2UW1_3691 DNA-directed DNA polymerase; PFAM: DNA-repair protein, UmuC-like; DNA-directed DNA polymerase 1033452..1034606 Nitrosomonas sp. AL212 10297625 YP_004294182.1 CDS NAL212_1110 NC_015222.1 1034688 1035353 D KEGG: mfa:Mfla_2030 abortive infection protein; TIGRFAM: Prenyl protease-related; PFAM: Abortive infection protein; CAAX prenyl protease-like protein 1034688..1035353 Nitrosomonas sp. AL212 10297626 YP_004294183.1 CDS NAL212_1111 NC_015222.1 1035392 1036111 R PFAM: Type IV pilus assembly PilZ; KEGG: slt:Slit_1652 type IV pilus assembly PilZ; type IV pilus assembly PilZ complement(1035392..1036111) Nitrosomonas sp. AL212 10297627 YP_004294184.1 CDS NAL212_1112 NC_015222.1 1036607 1037989 D PFAM: Protein of unknown function DUF1597; KEGG: nmu:Nmul_A0439 hypothetical protein; hypothetical protein 1036607..1037989 Nitrosomonas sp. AL212 10297628 YP_004294185.1 CDS NAL212_1113 NC_015222.1 1038064 1038921 R KEGG: nmu:Nmul_A1976 pseudouridine synthase, RluD; TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RluA family pseudouridine synthase complement(1038064..1038921) Nitrosomonas sp. AL212 10297629 YP_004294186.1 CDS NAL212_1114 NC_015222.1 1039073 1039879 D KEGG: nmu:Nmul_A1975 TPR repeat-containing protein; manually curated; TIGRFAM: Outer membrane assembly lipoprotein YfiO; outer membrane assembly lipoprotein YfiO 1039073..1039879 Nitrosomonas sp. AL212 10297630 YP_004294187.1 CDS NAL212_1115 NC_015222.1 1040051 1040494 R PFAM: UspA; KEGG: net:Neut_2476 UspA domain-containing protein; UspA domain-containing protein complement(1040051..1040494) Nitrosomonas sp. AL212 10297631 YP_004294188.1 CDS NAL212_1116 NC_015222.1 1040599 1041474 R KEGG: nmu:Nmul_A1494 esterase/lipase/thioesterase family protein; esterase/lipase/thioesterase family protein complement(1040599..1041474) Nitrosomonas sp. AL212 10297632 YP_004294189.1 CDS NAL212_1117 NC_015222.1 1041495 1042043 R PFAM: FecR protein; KEGG: nmu:Nmul_A1046 Fe2+-dicitrate sensor membrane component-like; FecR protein complement(1041495..1042043) Nitrosomonas sp. AL212 10297633 YP_004294190.1 CDS NAL212_1118 NC_015222.1 1042186 1043184 D KEGG: lch:Lcho_3567 hypothetical protein; hypothetical protein 1042186..1043184 Nitrosomonas sp. AL212 10297634 YP_004294191.1 CDS NAL212_1119 NC_015222.1 1043401 1044198 R KEGG: dar:Daro_2798 response regulator receiver; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; response regulator receiver protein complement(1043401..1044198) Nitrosomonas sp. AL212 10297635 YP_004294192.1 CDS NAL212_1120 NC_015222.1 1044727 1045611 R KEGG: nmu:Nmul_A2195 prephenate dehydrogenase; PFAM: Prephenate dehydrogenase; prephenate dehydrogenase complement(1044727..1045611) Nitrosomonas sp. AL212 10297636 YP_004294193.1 CDS NAL212_1121 NC_015222.1 1045637 1046755 R TIGRFAM: Histidinol-phosphate aminotransferase; KEGG: nmu:Nmul_A2193 histidinol-phosphate aminotransferase; PFAM: Aminotransferase, class I/classII; histidinol-phosphate aminotransferase complement(1045637..1046755) Nitrosomonas sp. AL212 10297637 YP_004294194.1 CDS NAL212_1122 NC_015222.1 1046833 1047903 R TIGRFAM: Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain; PFAM: Prephenate dehydratase; Amino acid-binding ACT; Chorismate mutase, type II; KEGG: neu:NE0335 prephenate dehydratase/chorismate mutase; SMART: Chorismate mutase; chorismate mutase complement(1046833..1047903) Nitrosomonas sp. AL212 10297638 YP_004294195.1 CDS NAL212_1123 NC_015222.1 1047944 1049140 R KEGG: nmu:Nmul_A2191 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; phosphoglycerate dehydrogenase complement(1047944..1049140) Nitrosomonas sp. AL212 10297639 YP_004294196.1 CDS NAL212_1124 NC_015222.1 1049133 1050224 R TIGRFAM: Phosphoserine aminotransferase, subgroup; KEGG: nmu:Nmul_A2190 phosphoserine aminotransferase; PFAM: Aminotransferase, class V/Cysteine desulfurase; phosphoserine aminotransferase complement(1049133..1050224) Nitrosomonas sp. AL212 10297640 YP_004294197.1 CDS NAL212_1125 NC_015222.1 1050257 1052815 R SMART: DNA topoisomerase, type IIA, subunit A/C-terminal; TIGRFAM: DNA gyrase, subunit A; KEGG: nmu:Nmul_A2189 DNA gyrase subunit A; PFAM: DNA topoisomerase, type IIA, subunit A/C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel; DNA gyrase subunit A complement(1050257..1052815) Nitrosomonas sp. AL212 10297641 YP_004294198.1 CDS NAL212_1126 NC_015222.1 1053123 1054283 D TIGRFAM: Acetylornithine/succinylornithine aminotransferase; KEGG: nmu:Nmul_A1041 acetylornithine aminotransferase; PFAM: Aminotransferase class-III; acetylornithine and succinylornithine aminotransferase 1053123..1054283 Nitrosomonas sp. AL212 10297642 YP_004294199.1 CDS NAL212_1127 NC_015222.1 1054328 1055254 D TIGRFAM: Ornithine carbamoyltransferase; KEGG: net:Neut_2066 ornithine carbamoyltransferase; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain; ornithine carbamoyltransferase 1054328..1055254 Nitrosomonas sp. AL212 10297643 YP_004294200.1 CDS NAL212_1128 NC_015222.1 1055330 1056544 D TIGRFAM: Argininosuccinate synthase; KEGG: nmu:Nmul_A1043 argininosuccinate synthase; PFAM: Argininosuccinate synthase; argininosuccinate synthase 1055330..1056544 Nitrosomonas sp. AL212 10297644 YP_004294201.1 CDS NAL212_1129 NC_015222.1 1056739 1057224 D PFAM: Protein of unknown function DUF520; KEGG: nmu:Nmul_A1044 putative nucleotide-binding protein; hypothetical protein 1056739..1057224 Nitrosomonas sp. AL212 10297645 YP_004294202.1 CDS NAL212_1130 NC_015222.1 1057511 1057888 D KEGG: nmu:Nmul_A0762 30S ribosomal protein S12; TIGRFAM: Ribosomal protein S12, bacteria; PFAM: Ribosomal protein S12/S23; 30S ribosomal protein S12 1057511..1057888 Nitrosomonas sp. AL212 10297646 YP_004294203.1 CDS NAL212_1131 NC_015222.1 1057987 1058457 D KEGG: neu:NE2054 30S ribosomal protein S7; TIGRFAM: Ribosomal protein S7, bacterial-type; PFAM: Ribosomal protein S7; 30S ribosomal protein S7 1057987..1058457 Nitrosomonas sp. AL212 10297647 YP_004294204.1 CDS NAL212_1132 NC_015222.1 1058514 1060604 D TIGRFAM: Translation elongation factor EFG/EF2; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal; KEGG: nmu:Nmul_A0764 elongation factor G; SMART: Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal; translation elongation factor G 1058514..1060604 Nitrosomonas sp. AL212 10297648 YP_004294205.1 CDS NAL212_1133 NC_015222.1 1060636 1061826 D KEGG: neu:NE2052 elongation factor Tu; TIGRFAM: Translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFTu/EF1A, C-terminal; translation elongation factor Tu 1060636..1061826 Nitrosomonas sp. AL212 10297649 YP_004294206.1 CDS NAL212_1134 NC_015222.1 1061910 1062218 D KEGG: neu:NE0400 30S ribosomal protein S10; TIGRFAM: Ribosomal protein S10 subgroup; PFAM: Ribosomal protein S10; 30S ribosomal protein S10 1061910..1062218 Nitrosomonas sp. AL212 10297650 YP_004294207.1 CDS NAL212_1135 NC_015222.1 1062302 1062949 D KEGG: nmu:Nmul_A0767 ribosomal protein L3; TIGRFAM: Ribosomal protein L3, bacterial/organelle-type; PFAM: Ribosomal protein L3; 50S ribosomal protein L3 1062302..1062949 Nitrosomonas sp. AL212 10297651 YP_004294208.1 CDS NAL212_1136 NC_015222.1 1062991 1063611 D PFAM: Ribosomal protein L4/L1e; KEGG: nmu:Nmul_A0768 50S ribosomal protein L4; 50S ribosomal protein L4/L1e 1062991..1063611 Nitrosomonas sp. AL212 10297652 YP_004294209.1 CDS NAL212_1137 NC_015222.1 1063608 1063943 D PFAM: Ribosomal protein L25/L23; KEGG: nmu:Nmul_A0769 ribosomal L23 protein; 50S ribosomal protein L25/L23 1063608..1063943 Nitrosomonas sp. AL212 10297653 YP_004294210.1 CDS NAL212_1138 NC_015222.1 1063943 1064776 D KEGG: nmu:Nmul_A0770 50S ribosomal protein L2; TIGRFAM: Ribosomal protein L2, bacterial-type; PFAM: Ribosomal protein L2, C-terminal; Ribosomal Proteins L2, RNA binding domain; 50S ribosomal protein L2 1063943..1064776 Nitrosomonas sp. AL212 10297654 YP_004294211.1 CDS NAL212_1139 NC_015222.1 1064781 1065062 D KEGG: gca:Galf_0562 30S ribosomal protein S19; TIGRFAM: Ribosomal protein S19, bacterial-type; PFAM: Ribosomal protein S19/S15; 30S ribosomal protein S19 1064781..1065062 Nitrosomonas sp. AL212 10297655 YP_004294212.1 CDS NAL212_1140 NC_015222.1 1065072 1065428 D KEGG: nmu:Nmul_A0772 ribosomal protein L22; TIGRFAM: Ribosomal protein L22, bacterial-type; PFAM: Ribosomal protein L22/L17; 50S ribosomal protein L22 1065072..1065428 Nitrosomonas sp. AL212 10297656 YP_004294213.1 CDS NAL212_1141 NC_015222.1 1065434 1066252 D TIGRFAM: Ribosomal protein S3, bacterial; PFAM: Ribosomal protein S3, C-terminal; Ribosomal protein S3, N-terminal; K Homology, type 2; KEGG: nmu:Nmul_A0773 30S ribosomal protein S3; SMART: K Homology; 30S ribosomal protein S3 1065434..1066252 Nitrosomonas sp. AL212 10297657 YP_004294214.1 CDS NAL212_1142 NC_015222.1 1066271 1066687 D KEGG: bpy:Bphyt_3637 50S ribosomal protein L16; TIGRFAM: Ribosomal protein L16; PFAM: Ribosomal protein L10e/L16; 50S ribosomal protein L16 1066271..1066687 Nitrosomonas sp. AL212 10297658 YP_004294215.1 CDS NAL212_1143 NC_015222.1 1066691 1066894 D KEGG: bgl:bglu_1g02660 50S ribosomal protein L29; TIGRFAM: Ribosomal protein L29; PFAM: Ribosomal protein L29; 50S ribosomal protein L29 1066691..1066894 Nitrosomonas sp. AL212 10297659 YP_004294216.1 CDS NAL212_1144 NC_015222.1 1066881 1067126 D KEGG: nmu:Nmul_A0776 ribosomal protein S17; TIGRFAM: Ribosomal protein S17, bacterial-type; PFAM: Ribosomal protein S17; 30S ribosomal protein S17 1066881..1067126 Nitrosomonas sp. AL212 10297660 YP_004294217.1 CDS NAL212_1145 NC_015222.1 1067294 1067662 D KEGG: nmu:Nmul_A0777 ribosomal protein L14; TIGRFAM: Ribosomal protein L14, bacterial-type; PFAM: Ribosomal protein L14b/L23e; 50S ribosomal protein L14 1067294..1067662 Nitrosomonas sp. AL212 10297661 YP_004294218.1 CDS NAL212_1146 NC_015222.1 1067681 1067998 D TIGRFAM: Ribosomal protein L24; PFAM: KOW; KEGG: dar:Daro_0330 50S ribosomal protein L24; SMART: KOW; 50S ribosomal protein L24 1067681..1067998 Nitrosomonas sp. AL212 10297662 YP_004294219.1 CDS NAL212_1147 NC_015222.1 1068017 1068556 D PFAM: Ribosomal protein L5; KEGG: nmu:Nmul_A0779 50S ribosomal protein L5; 50S ribosomal protein L5 1068017..1068556 Nitrosomonas sp. AL212 10297663 YP_004294220.1 CDS NAL212_1148 NC_015222.1 1068564 1068869 D PFAM: Ribosomal protein S14; KEGG: nmu:Nmul_A0780 ribosomal protein S14; 30S ribosomal protein S14 1068564..1068869 Nitrosomonas sp. AL212 10297664 YP_004294221.1 CDS NAL212_1149 NC_015222.1 1068946 1069341 D PFAM: Ribosomal protein S8; KEGG: nmu:Nmul_A0781 ribosomal protein S8; 30S ribosomal protein S8 1068946..1069341 Nitrosomonas sp. AL212 10297665 YP_004294222.1 CDS NAL212_1150 NC_015222.1 1069354 1069887 D KEGG: nmu:Nmul_A0782 ribosomal protein L6; TIGRFAM: Ribosomal protein L6, bacterial-type; PFAM: Ribosomal protein L6, alpha-beta domain; 50S ribosomal protein L6 1069354..1069887 Nitrosomonas sp. AL212 10297666 YP_004294223.1 CDS NAL212_1151 NC_015222.1 1069898 1070254 D KEGG: nmu:Nmul_A0783 ribosomal protein L18; TIGRFAM: Ribosomal protein L18, bacterial; PFAM: Ribosomal protein L18/L5; 50S ribosomal protein L18 1069898..1070254 Nitrosomonas sp. AL212 10297667 YP_004294224.1 CDS NAL212_1152 NC_015222.1 1070268 1070798 D KEGG: nmu:Nmul_A0784 30S ribosomal protein S5; TIGRFAM: Ribosomal protein S5, bacterial-type; PFAM: Ribosomal protein S5, C-terminal; Ribosomal protein S5, N-terminal; 30S ribosomal protein S5 1070268..1070798 Nitrosomonas sp. AL212 10297668 YP_004294225.1 CDS NAL212_1153 NC_015222.1 1070805 1070996 D KEGG: dia:Dtpsy_0391 50S ribosomal protein L30; TIGRFAM: Ribosomal protein L30, bacterial-type; PFAM: Ribosomal protein L30, ferredoxin-like fold domain; 50S ribosomal protein L30 1070805..1070996 Nitrosomonas sp. AL212 10297669 YP_004294226.1 CDS NAL212_1154 NC_015222.1 1070998 1071429 D KEGG: mei:Msip34_0321 ribosomal protein L15; TIGRFAM: Ribosomal protein L15, bacterial-type; PFAM: Ribosomal protein L18e/L15; 50S ribosomal protein L15 1070998..1071429 Nitrosomonas sp. AL212 10297670 YP_004294227.1 CDS NAL212_1155 NC_015222.1 1071447 1072778 D KEGG: nmu:Nmul_A0787 preprotein translocase subunit SecY; TIGRFAM: SecY protein; PFAM: SecY protein; preprotein translocase subunit SecY 1071447..1072778 Nitrosomonas sp. AL212 10297671 YP_004294228.1 CDS NAL212_1156 NC_015222.1 1072798 1073016 D TIGRFAM: Translation initiation factor IF-1; PFAM: RNA-binding domain, S1, IF1 type; KEGG: nmu:Nmul_A0788 translation initiation factor IF-1; SMART: RNA-binding domain, S1; translation initiation factor IF-1 1072798..1073016 Nitrosomonas sp. AL212 10297672 YP_004294229.1 CDS NAL212_1157 NC_015222.1 1073226 1073585 D KEGG: nmu:Nmul_A0789 30S ribosomal protein S13; TIGRFAM: Ribosomal protein S13, bacterial-type; PFAM: Ribosomal protein S13; 30S ribosomal protein S13 1073226..1073585 Nitrosomonas sp. AL212 10297673 YP_004294230.1 CDS NAL212_1158 NC_015222.1 1073621 1074010 D KEGG: nmu:Nmul_A0790 30S ribosomal protein S11; TIGRFAM: Ribosomal protein S11, bacterial-type; PFAM: Ribosomal protein S11; 30S ribosomal protein S11 1073621..1074010 Nitrosomonas sp. AL212 10297674 YP_004294231.1 CDS NAL212_1159 NC_015222.1 1074023 1074649 D TIGRFAM: Ribosomal protein S4, bacterial-type; PFAM: Ribosomal protein S4/S9, N-terminal; RNA-binding S4; KEGG: nmu:Nmul_A0791 30S ribosomal protein S4; SMART: RNA-binding S4; 30S ribosomal protein S4 1074023..1074649 Nitrosomonas sp. AL212 10297675 YP_004294232.1 CDS NAL212_1160 NC_015222.1 1074696 1075703 D TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase, alpha subunit, C-terminal; DNA-directed RNA polymerase, insert domain; DNA-directed RNA polymerase, dimerisation; KEGG: nmu:Nmul_A0792 DNA-directed RNA polymerase subunit alpha; SMART: DNA-directed RNA polymerase, RpoA/D/Rpb3-type; DNA-directed RNA polymerase subunit alpha 1074696..1075703 Nitrosomonas sp. AL212 10297676 YP_004294233.1 CDS NAL212_1161 NC_015222.1 1075690 1076091 D KEGG: nmu:Nmul_A0793 ribosomal protein L17; TIGRFAM: Ribosomal protein L17; PFAM: Ribosomal protein L17; 50S ribosomal protein L17 1075690..1076091 Nitrosomonas sp. AL212 10297677 YP_004294234.1 CDS NAL212_1162 NC_015222.1 1076161 1077156 D TIGRFAM: Biotin--acetyl-CoA-carboxylase ligase; KEGG: meh:M301_1880 biotin/acetyl-CoA-carboxylase ligase; PFAM: Biotin/lipoate A/B protein ligase; Biotin protein ligase, C-terminal; biotin-(acetyl-CoA carboxylase) ligase 1076161..1077156 Nitrosomonas sp. AL212 10297678 YP_004294235.1 CDS NAL212_1163 NC_015222.1 1077163 1077927 D KEGG: nmu:Nmul_A2081 pantothenate kinase; TIGRFAM: Type III pantothenate kinase; PFAM: Type III pantothenate kinase; putative Baf family transcriptional acitvator 1077163..1077927 Nitrosomonas sp. AL212 10297679 YP_004294236.1 CDS NAL212_1164 NC_015222.1 1077930 1078526 D KEGG: nmu:Nmul_A2080 ribosome biogenesis GTP-binding protein YsxC; TIGRFAM: GTP-binding protein, ribosome biogenesis, YsxC; PFAM: GTP-binding protein, HSR1-related; ribosome biogenesis GTP-binding protein YsxC 1077930..1078526 Nitrosomonas sp. AL212 10297680 YP_004294237.1 CDS NAL212_1165 NC_015222.1 1078731 1079735 D KEGG: neu:NE2457 delta-aminolevulinic acid dehydratase; PFAM: Tetrapyrrole biosynthesis, porphobilinogen synthase; porphobilinogen synthase 1078731..1079735 Nitrosomonas sp. AL212 10297681 YP_004294238.1 CDS NAL212_1166 NC_015222.1 1079765 1082083 R KEGG: net:Neut_1808 penicillin-binding protein, 1A family protein; TIGRFAM: Penicillin-binding protein 1A; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; penicillin-binding protein complement(1079765..1082083) Nitrosomonas sp. AL212 10297682 YP_004294239.1 CDS NAL212_1167 NC_015222.1 1082315 1083418 D TIGRFAM: Type IV pilus assembly protein PilM; KEGG: slt:Slit_0108 type IV pilus assembly protein PilM; type IV pilus assembly protein PilM 1082315..1083418 Nitrosomonas sp. AL212 10297683 YP_004294240.1 CDS NAL212_1168 NC_015222.1 1083415 1083999 D PFAM: Fimbrial assembly; KEGG: neu:NE2315 putative type 4 fimbrial biogenesis protein PilN; fimbrial assembly family protein 1083415..1083999 Nitrosomonas sp. AL212 10297684 YP_004294241.1 CDS NAL212_1169 NC_015222.1 1084017 1084631 D KEGG: neu:NE2314 putative fimbrial type-4 assembly membrane transmembrane protein; putative fimbrial type-4 assembly membrane transmembrane protein 1084017..1084631 Nitrosomonas sp. AL212 10297685 YP_004294242.1 CDS NAL212_1170 NC_015222.1 1084635 1085153 D PFAM: Pilus assembly protein PilP; KEGG: net:Neut_1804 pilus assembly protein, PilQ; Pilus assembly protein PilP 1084635..1085153 Nitrosomonas sp. AL212 10297686 YP_004294243.1 CDS NAL212_1171 NC_015222.1 1085185 1087281 D TIGRFAM: Type IV pilus secretin PilQ; PFAM: Type II/III secretion system; Secretin/TonB, short N-terminal; KEGG: net:Neut_1803 type IV pilus secretin PilQ; SMART: Secretin/TonB, short N-terminal; type IV pilus secretin PilQ 1085185..1087281 Nitrosomonas sp. AL212 10297687 YP_004294244.1 CDS NAL212_1172 NC_015222.1 1087288 1087752 R KEGG: nmu:Nmul_A1127 tRNA/rRNA methyltransferase (SpoU); TIGRFAM: RNA methyltransferase TrmH, group 2; PFAM: tRNA/rRNA methyltransferase, SpoU; TrmH family RNA methyltransferase complement(1087288..1087752) Nitrosomonas sp. AL212 10297688 YP_004294245.1 CDS NAL212_1173 NC_015222.1 1087774 1088460 R PFAM: Phosphoribosyltransferase; KEGG: nmu:Nmul_A1128 phosphoribosyltransferase; phosphoribosyltransferase complement(1087774..1088460) Nitrosomonas sp. AL212 10297689 YP_004294246.1 CDS NAL212_1174 NC_015222.1 1088593 1089603 D SMART: Biotin/thiamin synthesis-associated protein; Elongator protein 3/MiaB/NifB; TIGRFAM: Biotin synthase; KEGG: neu:NE2300 biotin synthase; PFAM: Biotin/thiamin synthesis-associated protein; Radical SAM; biotin synthase 1088593..1089603 Nitrosomonas sp. AL212 10297690 YP_004294247.1 CDS NAL212_1175 NC_015222.1 1089604 1090770 D TIGRFAM: 8-amino-7-oxononanoate synthase/2-amino-3-ketobutyrate coenzyme A ligase; KEGG: net:Neut_2137 8-amino-7-oxononanoate synthase; PFAM: Aminotransferase, class I/classII; 8-amino-7-oxononanoate synthase 1089604..1090770 Nitrosomonas sp. AL212 10297691 YP_004294248.1 CDS NAL212_1176 NC_015222.1 1090767 1091537 D TIGRFAM: Carboxylesterase BioH; KEGG: neu:NE2298 biotin biosynthesis protein BioH; PFAM: Alpha/beta hydrolase fold-1; bioH protein 1090767..1091537 Nitrosomonas sp. AL212 10297692 YP_004294249.1 CDS NAL212_1177 NC_015222.1 1091515 1092396 D KEGG: nmu:Nmul_A1132 biotin biosynthesis protein BioC; TIGRFAM: Biotin biosynthesis protein BioC; PFAM: Methyltransferase type 11; biotin biosynthesis protein BioC 1091515..1092396 Nitrosomonas sp. AL212 10297693 YP_004294250.1 CDS NAL212_1178 NC_015222.1 1092398 1093081 D KEGG: nmu:Nmul_A1133 dithiobiotin synthetase; TIGRFAM: Dethiobiotin synthase; PFAM: Cobyrinic acid a,c-diamide synthase; dethiobiotin synthase 1092398..1093081 Nitrosomonas sp. AL212 10297694 YP_004294251.1 CDS NAL212_1179 NC_015222.1 1093145 1093849 D KEGG: azo:azo2627 hypothetical protein; hypothetical protein 1093145..1093849 Nitrosomonas sp. AL212 10297695 YP_004294252.1 CDS NAL212_1180 NC_015222.1 1093869 1094165 D PFAM: Protein of unknown function DUF3175; KEGG: rva:Rvan_2708 hypothetical protein; hypothetical protein 1093869..1094165 Nitrosomonas sp. AL212 10297696 YP_004294253.1 CDS NAL212_1181 NC_015222.1 1094209 1094847 D KEGG: sna:Snas_5583 transcriptional regulator, AsnC family; hypothetical protein 1094209..1094847 Nitrosomonas sp. AL212 10297697 YP_004294254.1 CDS NAL212_1182 NC_015222.1 1094948 1095703 R KEGG: bja:bll4865 putative carbonic anhydrase; PFAM: Carbonic anhydrase; SMART: Carbonic anhydrase; carbonic anhydrase complement(1094948..1095703) Nitrosomonas sp. AL212 10297698 YP_004294255.1 CDS NAL212_1183 NC_015222.1 1095894 1097132 D KEGG: reu:Reut_A3452 glycosyl transferase family protein; PFAM: Glycosyl transferase, family 28; UDP-glucuronosyl/UDP-glucosyltransferase; Sterol 3-beta-glucosyltransferase 1095894..1097132 Nitrosomonas sp. AL212 10297699 YP_004294256.1 CDS NAL212_1184 NC_015222.1 1097177 1097866 D PFAM: ThiJ/PfpI; KEGG: neu:NE2259 ThiJ/PfpI family protein; ThiJ/PfpI domain-containing protein 1097177..1097866 Nitrosomonas sp. AL212 10297700 YP_004294257.1 CDS NAL212_1185 NC_015222.1 1097961 1098560 D KEGG: alv:Alvin_1116 hypothetical protein; hypothetical protein 1097961..1098560 Nitrosomonas sp. AL212 10297701 YP_004294258.1 CDS NAL212_1186 NC_015222.1 1098669 1099628 D KEGG: sro:Sros_8312 hypothetical protein; hypothetical protein 1098669..1099628 Nitrosomonas sp. AL212 10297702 YP_004294259.1 CDS NAL212_1187 NC_015222.1 1099663 1099875 D KEGG: vsa:VSAL_II0890 hypothetical protein; hypothetical protein 1099663..1099875 Nitrosomonas sp. AL212 10297703 YP_004294260.1 CDS NAL212_1188 NC_015222.1 1099879 1100262 D KEGG: dap:Dacet_1288 hypothetical protein; hypothetical protein 1099879..1100262 Nitrosomonas sp. AL212 10297704 YP_004294261.1 CDS NAL212_1189 NC_015222.1 1100318 1101568 R KEGG: net:Neut_2126 diguanylate phosphodiesterase; PFAM: Diguanylate phosphodiesterase, EAL domain; Metal-dependent hydrolase HDOD; SMART: Diguanylate phosphodiesterase, EAL domain; diguanylate phosphodiesterase metal dependent hydrolase domain complement(1100318..1101568) Nitrosomonas sp. AL212 10297705 YP_004294262.1 CDS NAL212_1190 NC_015222.1 1101788 1102720 D PFAM: Abortive infection protein; KEGG: sli:Slin_5619 hypothetical protein; Abortive infection protein 1101788..1102720 Nitrosomonas sp. AL212 10297706 YP_004294263.1 CDS NAL212_1191 NC_015222.1 1103073 1103621 D PFAM: CHRD; KEGG: ppm:PPSC2_c2409 CHRD domain containing protein; CHRD domain-containing protein 1103073..1103621 Nitrosomonas sp. AL212 10297707 YP_004294264.1 CDS NAL212_1192 NC_015222.1 1103920 1104291 D PFAM: Putative thiol-disulphide oxidoreductase DCC; KEGG: ppr:PBPRB0254 hypothetical protein; thiol-disulfide oxidoreductase DCC 1103920..1104291 Nitrosomonas sp. AL212 10297708 YP_004294265.1 CDS NAL212_1193 NC_015222.1 1104454 1104879 R KEGG: ang:An11g01740 hypothetical protein; hypothetical protein complement(1104454..1104879) Nitrosomonas sp. AL212 10297709 YP_004294266.1 CDS NAL212_1194 NC_015222.1 1104907 1105899 R PFAM: Bile acid:sodium symporter; KEGG: tgr:Tgr7_1550 bile acid:sodium symporter; bile acid:sodium symporter complement(1104907..1105899) Nitrosomonas sp. AL212 10297710 YP_004294267.1 CDS NAL212_1195 NC_015222.1 1105911 1106006 R hypothetical protein complement(1105911..1106006) Nitrosomonas sp. AL212 10297711 YP_004294268.1 CDS NAL212_1196 NC_015222.1 1106006 1106323 R PFAM: Domain of unknown function DUF190; KEGG: net:Neut_1273 hypothetical protein; hypothetical protein complement(1106006..1106323) Nitrosomonas sp. AL212 10297712 YP_004294269.1 CDS NAL212_1197 NC_015222.1 1106340 1106753 R TIGRFAM: Camphor resistance CrcB protein; HAMAP: Camphor resistance CrcB protein; KEGG: net:Neut_1274 CrcB protein; PFAM: Camphor resistance CrcB protein; CrcB-like protein complement(1106340..1106753) Nitrosomonas sp. AL212 10297713 YP_004294270.1 CDS NAL212_1198 NC_015222.1 1106870 1107586 D PFAM: Protein of unknown function DUF81; KEGG: aca:ACP_0714 hypothetical protein; hypothetical protein 1106870..1107586 Nitrosomonas sp. AL212 10297714 YP_004294271.1 CDS NAL212_1199 NC_015222.1 1107657 1109543 D PFAM: Divalent ion symporter; Regulator of K+ conductance, C-terminal; KEGG: tgr:Tgr7_0867 TrkA-C domain protein; citrate transporter 1107657..1109543 Nitrosomonas sp. AL212 10297715 YP_004294272.1 CDS NAL212_1200 NC_015222.1 1109581 1111926 D PFAM: Divalent ion symporter; Regulator of K+ conductance, C-terminal; KEGG: dat:HRM2_43470 putative di- and tricarboxylate transporter; citrate transporter 1109581..1111926 Nitrosomonas sp. AL212 10297716 YP_004294273.1 CDS NAL212_1201 NC_015222.1 1111980 1112855 R PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: net:Neut_1373 transcriptional regulator, LysR family protein; LysR family transcriptional regulator complement(1111980..1112855) Nitrosomonas sp. AL212 10297717 YP_004294274.1 CDS NAL212_1202 NC_015222.1 1113204 1113401 D KEGG: lwe:lwe0218 putative secreted lipoprotein; hypothetical protein 1113204..1113401 Nitrosomonas sp. AL212 10297718 YP_004294275.1 CDS NAL212_1203 NC_015222.1 1113623 1114522 D KEGG: noc:Noc_0082 sulfotransferase; PFAM: Sulfotransferase domain; alcohol sulfotransferase 1113623..1114522 Nitrosomonas sp. AL212 10297719 YP_004294276.1 CDS NAL212_1204 NC_015222.1 1114932 1116437 R TIGRFAM: Mg chelatase-related protein; PFAM: Magnesium chelatase, ChlI subunit; KEGG: net:Neut_2377 Mg chelatase, subunit ChlI; SMART: ATPase, AAA+ type, core; Mg chelatase subunit ChlI complement(1114932..1116437) Nitrosomonas sp. AL212 10297720 YP_004294277.1 CDS NAL212_1205 NC_015222.1 1116507 1116773 R PFAM: Protein of unknown function DUF526; KEGG: net:Neut_2376 hypothetical protein; hypothetical protein complement(1116507..1116773) Nitrosomonas sp. AL212 10297721 YP_004294278.1 CDS NAL212_1206 NC_015222.1 1116991 1117995 D PFAM: Aminoglycoside phosphotransferase; KEGG: nmu:Nmul_A0126 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 1116991..1117995 Nitrosomonas sp. AL212 10297722 YP_004294279.1 CDS NAL212_1207 NC_015222.1 1118015 1118716 D PFAM: Nucleotidyl transferase; KEGG: nmu:Nmul_A0127 nucleotidyl transferase; nucleotidyl transferase 1118015..1118716 Nitrosomonas sp. AL212 10297723 YP_004294280.1 CDS NAL212_1208 NC_015222.1 1118748 1120055 D PFAM: Peptidase M24, structural domain; Peptidase M24B, X-Pro dipeptidase/aminopeptidase P N-terminal; KEGG: neu:NE2147 M24 family metallopeptidase; peptidase M24 1118748..1120055 Nitrosomonas sp. AL212 10297724 YP_004294281.1 CDS NAL212_1209 NC_015222.1 1120052 1120417 D KEGG: net:Neut_2094 hypothetical protein; hypothetical protein 1120052..1120417 Nitrosomonas sp. AL212 10297725 YP_004294282.1 CDS NAL212_1210 NC_015222.1 1120502 1122892 R KEGG: neu:NE1123 penicillin amidase; PFAM: Peptidase S45, penicillin amidase; acyl-homoserine-lactone acylase complement(1120502..1122892) Nitrosomonas sp. AL212 10297726 YP_004294283.1 CDS NAL212_1211 NC_015222.1 1123109 1124248 D KEGG: net:Neut_2443 flagellar biosynthesis protein FlhB; TIGRFAM: Flagellar biosynthetic protein FlhB; PFAM: Type III secretion exporter; flagellar biosynthetic protein FlhB 1123109..1124248 Nitrosomonas sp. AL212 10297727 YP_004294284.1 CDS NAL212_1212 NC_015222.1 1124303 1126384 D KEGG: net:Neut_2444 flagellar biosynthesis protein FlhA; TIGRFAM: Flagellar biosynthesis protein FlhA; PFAM: Type III secretion system FHIPEP; flagellar biosynthesis protein FlhA 1124303..1126384 Nitrosomonas sp. AL212 10297728 YP_004294285.1 CDS NAL212_1213 NC_015222.1 1126381 1127682 D TIGRFAM: Signal-recognition particle (SRP)-type GTPase; PFAM: Signal recognition particle, SRP54 subunit, GTPase; KEGG: neu:NE2489 flagellar biosynthesis regulator FlhF; SMART: Signal recognition particle, SRP54 subunit, GTPase; ATPase, AAA+ type, core; flagellar biosynthetic protein FlhF 1126381..1127682 Nitrosomonas sp. AL212 10297729 YP_004294286.1 CDS NAL212_1214 NC_015222.1 1127675 1128571 D PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: neu:NE2490 putative MinD-related protein; Cobyrinic acid ac-diamide synthase 1127675..1128571 Nitrosomonas sp. AL212 10297730 YP_004294287.1 CDS NAL212_1215 NC_015222.1 1128577 1129293 D KEGG: net:Neut_2447 RNA polymerase, sigma 28 subunit; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 3; RNA polymerase sigma 28 subunit FliA/WhiG 1128577..1129293 Nitrosomonas sp. AL212 10297731 YP_004294288.1 CDS NAL212_1216 NC_015222.1 1129339 1130097 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: dar:Daro_0744 flagellar motor protein; MotA/TolQ/ExbB proton channel 1129339..1130097 Nitrosomonas sp. AL212 10297732 YP_004294289.1 CDS NAL212_1217 NC_015222.1 1130134 1130928 D PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: nmu:Nmul_A1315 flagellar motor protein MotD; OmpA/MotB domain-containing protein 1130134..1130928 Nitrosomonas sp. AL212 10297733 YP_004294290.1 CDS NAL212_1218 NC_015222.1 1131040 1131504 R PFAM: FlgN-like domain; KEGG: net:Neut_2438 FlgN family protein; FlgN family protein complement(1131040..1131504) Nitrosomonas sp. AL212 10297734 YP_004294291.1 CDS NAL212_1219 NC_015222.1 1131504 1131809 R KEGG: neu:NE2478 hypothetical protein; TIGRFAM: Anti-sigma-28 factor, FlgM; PFAM: Anti-sigma-28 factor, FlgM; flagellar biosynthesis anti-sigma factor protein FlgM complement(1131504..1131809) Nitrosomonas sp. AL212 10297735 YP_004294292.1 CDS NAL212_1220 NC_015222.1 1132028 1132795 D PFAM: Uncharacterised protein family CysZ; KEGG: nmu:Nmul_A1878 transmembrane protein; hypothetical protein 1132028..1132795 Nitrosomonas sp. AL212 10297736 YP_004294293.1 CDS NAL212_1221 NC_015222.1 1132942 1133673 D PFAM: Protein of unknown function DUF3025; KEGG: gca:Galf_1122 hypothetical protein; hypothetical protein 1132942..1133673 Nitrosomonas sp. AL212 10297737 YP_004294294.1 CDS NAL212_1222 NC_015222.1 1133737 1133907 D hypothetical protein 1133737..1133907 Nitrosomonas sp. AL212 10297738 YP_004294295.1 CDS NAL212_1223 NC_015222.1 1134231 1134656 D PFAM: Nucleoside diphosphate kinase; KEGG: bpr:GBP346_A2301 nucleoside diphosphate kinase; SMART: Nucleoside diphosphate kinase; nucleoside-diphosphate kinase 1134231..1134656 Nitrosomonas sp. AL212 10297739 YP_004294296.1 CDS NAL212_1224 NC_015222.1 1134677 1135777 D TIGRFAM: Ribosomal RNA large subunit methyltransferase RlmN; HAMAP: Ribosomal RNA large subunit methyltransferase RlmN; KEGG: nmu:Nmul_A2379 hypothetical protein; PFAM: Radical SAM; ribosomal RNA large subunit methyltransferase N 1134677..1135777 Nitrosomonas sp. AL212 10297740 YP_004294297.1 CDS NAL212_1225 NC_015222.1 1135774 1136553 D KEGG: net:Neut_2170 type IV pilus biogenesis/stability protein PilW; TIGRFAM: Pilus biogenesis/stability type IV, PilW; PFAM: Tetratricopeptide TPR-1; type IV pilus biogenesis/stability protein PilW 1135774..1136553 Nitrosomonas sp. AL212 10297741 YP_004294298.1 CDS NAL212_1226 NC_015222.1 1136550 1137776 D SMART: Helix-turn-helix type 3; KEGG: neu:NE0147 hypothetical protein; XRE family transcriptional regulator 1136550..1137776 Nitrosomonas sp. AL212 10297742 YP_004294299.1 CDS NAL212_1227 NC_015222.1 1137812 1139050 D KEGG: net:Neut_2168 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; TIGRFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; PFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 1137812..1139050 Nitrosomonas sp. AL212 10297743 YP_004294300.1 CDS NAL212_1228 NC_015222.1 1139050 1140324 D TIGRFAM: Histidyl-tRNA synthetase, class IIa, subgroup; KEGG: neu:NE0150 histidyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Anticodon-binding; histidyl-tRNA synthetase 1139050..1140324 Nitrosomonas sp. AL212 10297744 YP_004294301.1 CDS NAL212_1229 NC_015222.1 1140355 1140993 D PFAM: Protein of unknown function DUF2133; KEGG: nmu:Nmul_A2375 hypothetical protein; hypothetical protein 1140355..1140993 Nitrosomonas sp. AL212 10297745 YP_004294302.1 CDS NAL212_1230 NC_015222.1 1140971 1142227 D KEGG: neu:NE0152 PQQ repeat-containing protein; TIGRFAM: Outer membrane assembly lipoprotein YfgL; PFAM: Pyrrolo-quinoline quinone repeat; outer membrane assembly lipoprotein YfgL 1140971..1142227 Nitrosomonas sp. AL212 10297746 YP_004294303.1 CDS NAL212_1231 NC_015222.1 1142312 1143706 D TIGRFAM: GTP-binding, EngA; Small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; KEGG: nmu:Nmul_A2373 GTP-binding protein EngA; SMART: ATPase, AAA+ type, core; ribosome-associated GTPase EngA 1142312..1143706 Nitrosomonas sp. AL212 10297747 YP_004294304.1 CDS NAL212_1232 NC_015222.1 1145109 1146275 D KEGG: vap:Vapar_1531 two component transcriptional regulator, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; two component transcriptional regulator, LuxR family 1145109..1146275 Nitrosomonas sp. AL212 10297748 YP_004294305.1 CDS NAL212_1235 NC_015222.1 1146936 1147322 R KEGG: mca:MCA1082 hypothetical protein; hypothetical protein complement(1146936..1147322) Nitrosomonas sp. AL212 10297751 YP_004294306.1 CDS NAL212_1236 NC_015222.1 1147325 1147420 R hypothetical protein complement(1147325..1147420) Nitrosomonas sp. AL212 10297752 YP_004294307.1 CDS NAL212_1237 NC_015222.1 1147427 1147600 R hypothetical protein complement(1147427..1147600) Nitrosomonas sp. AL212 10297753 YP_004294308.1 CDS NAL212_1238 NC_015222.1 1147725 1148024 D PFAM: Transposase IS3/IS911family; KEGG: rms:RMA_0745 transposase; transposase IS3/IS911 family protein 1147725..1148024 Nitrosomonas sp. AL212 10297754 YP_004294309.1 CDS NAL212_1239 NC_015222.1 1148056 1149210 D PFAM: Integrase, catalytic core; KEGG: bac:BamMC406_6587 integrase catalytic region; integrase catalytic region 1148056..1149210 Nitrosomonas sp. AL212 10297755 YP_004294310.1 CDS NAL212_1241 NC_015222.1 1150227 1151135 D PFAM: NAD-dependent epimerase/dehydratase; Domain of unknown function DUF1731, C-terminal; KEGG: npu:Npun_R0504 hypothetical protein; NAD-dependent epimerase/dehydratase 1150227..1151135 Nitrosomonas sp. AL212 10297757 YP_004294311.1 CDS NAL212_1242 NC_015222.1 1151163 1152467 D KEGG: rbi:RB2501_13709 deoxyribodipyrimidine photolyase-class I; PFAM: DNA photolyase, FAD-binding/Cryptochrome, C-terminal; DNA photolyase, N-terminal; deoxyribodipyrimidine photo-lyase 1151163..1152467 Nitrosomonas sp. AL212 10297758 YP_004294312.1 CDS NAL212_1243 NC_015222.1 1152495 1153196 R KEGG: pca:Pcar_0627 hypothetical protein; hypothetical protein complement(1152495..1153196) Nitrosomonas sp. AL212 10297759 YP_004294313.1 CDS NAL212_1244 NC_015222.1 1153982 1154113 D KEGG: nmu:Nmul_A1142 hypothetical protein; hypothetical protein 1153982..1154113 Nitrosomonas sp. AL212 10297760 YP_004294314.1 CDS NAL212_1245 NC_015222.1 1154473 1154793 D KEGG: net:Neut_1364 hypothetical protein; hypothetical protein 1154473..1154793 Nitrosomonas sp. AL212 10297761 YP_004294315.1 CDS NAL212_1246 NC_015222.1 1154874 1155173 D KEGG: net:Neut_1363 peptidase; peptidase 1154874..1155173 Nitrosomonas sp. AL212 10297762 YP_004294316.1 CDS NAL212_1247 NC_015222.1 1155245 1155931 D KEGG: neu:NE1409 response regulator PhoP; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; two component transcriptional regulator, winged helix family 1155245..1155931 Nitrosomonas sp. AL212 10297763 YP_004294317.1 CDS NAL212_1248 NC_015222.1 1155928 1157268 D KEGG: neu:NE1408 sensory transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; integral membrane sensor signal transduction histidine kinase 1155928..1157268 Nitrosomonas sp. AL212 10297764 YP_004294318.1 CDS NAL212_1250 NC_015222.1 1157933 1158031 R hypothetical protein complement(1157933..1158031) Nitrosomonas sp. AL212 10297766 YP_004294319.1 CDS NAL212_1251 NC_015222.1 1158144 1158416 R PFAM: Uncharacterised protein family UPF0016; KEGG: cts:Ctha_0720 protein of unknown function UPF0016; hypothetical protein complement(1158144..1158416) Nitrosomonas sp. AL212 10297767 YP_004294320.1 CDS NAL212_1252 NC_015222.1 1158607 1159614 D KEGG: sde:Sde_3956 zinc-containing alcohol dehydrogenase family protein; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; mannitol dehydrogenase 1158607..1159614 Nitrosomonas sp. AL212 10297768 YP_004294321.1 CDS NAL212_1253 NC_015222.1 1159889 1161055 R PFAM: ATPase, AFG1-like; KEGG: sjp:SJA_C1-24350 putative ATPase; AFG1 family ATPase complement(1159889..1161055) Nitrosomonas sp. AL212 10297769 YP_004294322.1 CDS NAL212_1254 NC_015222.1 1161077 1162453 R PFAM: Major facilitator superfamily MFS-1; KEGG: nmu:Nmul_A0223 major facilitator transporter; major facilitator superfamily protein complement(1161077..1162453) Nitrosomonas sp. AL212 10297770 YP_004294323.1 CDS NAL212_1255 NC_015222.1 1162450 1163223 R TIGRFAM: Exodeoxyribonuclease III xth; AP endonuclease, family 1; KEGG: nmu:Nmul_A0224 exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III Xth complement(1162450..1163223) Nitrosomonas sp. AL212 10297771 YP_004294324.1 CDS NAL212_1256 NC_015222.1 1163250 1163894 D TIGRFAM: Orotate phosphoribosyl transferase, clade 1; KEGG: nmu:Nmul_A0225 orotate phosphoribosyltransferase; PFAM: Phosphoribosyltransferase; orotate phosphoribosyltransferase 1163250..1163894 Nitrosomonas sp. AL212 10297772 YP_004294325.1 CDS NAL212_1257 NC_015222.1 1164046 1164825 R KEGG: gpb:HDN1F_07110 hypothetical protein; hypothetical protein complement(1164046..1164825) Nitrosomonas sp. AL212 10297773 YP_004294326.1 CDS NAL212_1258 NC_015222.1 1164822 1165544 R PFAM: RNA ligase domain, REL/Rln2; KEGG: dda:Dd703_3690 DNA ligase III-like protein; RNA ligase domain, REL/Rln2 complement(1164822..1165544) Nitrosomonas sp. AL212 10297774 YP_004294327.1 CDS NAL212_1259 NC_015222.1 1165523 1166059 R KEGG: xau:Xaut_3738 hypothetical protein; hypothetical protein complement(1165523..1166059) Nitrosomonas sp. AL212 10297775 YP_004294328.1 CDS NAL212_1260 NC_015222.1 1166052 1167341 R PFAM: Domain of unknown function DUF3696, C-terminal; KEGG: xau:Xaut_3739 hypothetical protein; hypothetical protein complement(1166052..1167341) Nitrosomonas sp. AL212 10297776 YP_004294329.1 CDS NAL212_1263 NC_015222.1 1168439 1169593 R PFAM: Integrase, catalytic core; KEGG: bac:BamMC406_6587 integrase catalytic region; integrase catalytic region complement(1168439..1169593) Nitrosomonas sp. AL212 10297779 YP_004294330.1 CDS NAL212_1264 NC_015222.1 1169625 1169933 R PFAM: Transposase IS3/IS911family; KEGG: alv:Alvin_1732 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein complement(1169625..1169933) Nitrosomonas sp. AL212 10297780 YP_004294331.1 CDS NAL212_1266 NC_015222.1 1170739 1171059 D PFAM: Transposase IS3/IS911family; KEGG: alv:Alvin_1732 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 1170739..1171059 Nitrosomonas sp. AL212 10297782 YP_004294332.1 CDS NAL212_1267 NC_015222.1 1171059 1171958 D PFAM: Integrase, catalytic core; KEGG: pde:Pden_3846 integrase catalytic subunit; integrase catalytic region 1171059..1171958 Nitrosomonas sp. AL212 10297783 YP_004294333.1 CDS NAL212_1268 NC_015222.1 1171995 1173716 R KEGG: gpb:HDN1F_07060 DEAD/DEAH box helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; SMART: DEAD-like helicase, N-terminal; DEAD/DEAH box helicase domain-containing protein complement(1171995..1173716) Nitrosomonas sp. AL212 10297784 YP_004294334.1 CDS NAL212_1269 NC_015222.1 1173925 1174518 R PFAM: Protein of unknown function DUF882; KEGG: neu:NE2572 hypothetical protein; hypothetical protein complement(1173925..1174518) Nitrosomonas sp. AL212 10297785 YP_004294335.1 CDS NAL212_1270 NC_015222.1 1174565 1176196 R PFAM: YkuD domain; Peptidoglycan binding-like; KEGG: net:Neut_2532 peptidoglycan binding domain-containing protein; ErfK/YbiS/YcfS/YnhG family protein complement(1174565..1176196) Nitrosomonas sp. AL212 10297786 YP_004294336.1 CDS NAL212_1271 NC_015222.1 1176400 1178382 R PFAM: Amidohydrolase 3; KEGG: reu:Reut_B4849 hypothetical protein; amidohydrolase 3 complement(1176400..1178382) Nitrosomonas sp. AL212 10297787 YP_004294337.1 CDS NAL212_1272 NC_015222.1 1178415 1179044 R PFAM: Isochorismatase-like; KEGG: neu:NE2304 isochorismatase hydrolase family protein; isochorismatase hydrolase complement(1178415..1179044) Nitrosomonas sp. AL212 10297788 YP_004294338.1 CDS NAL212_1273 NC_015222.1 1179084 1179434 R KEGG: lic:LIC12065 hypothetical protein; hypothetical protein complement(1179084..1179434) Nitrosomonas sp. AL212 10297789 YP_004294339.1 CDS NAL212_1274 NC_015222.1 1179497 1180384 R PFAM: Pirin, N-terminal; Pirin, C-terminal; KEGG: mpt:Mpe_A2645 pirin-related protein; Pirin domain-containing protein complement(1179497..1180384) Nitrosomonas sp. AL212 10297790 YP_004294340.1 CDS NAL212_1275 NC_015222.1 1180492 1180812 D PFAM: Helix-turn-helix, HxlR type; KEGG: ava:Ava_1063 transcriptional regulator; HxlR family transcriptional regulator 1180492..1180812 Nitrosomonas sp. AL212 10297791 YP_004294341.1 CDS NAL212_1277 NC_015222.1 1181037 1183238 R PFAM: Di-haem cytochrome c peroxidase; KEGG: mca:MCA2590 cytochrome c peroxidase family protein, putative; di-heme cytochrome c peroxidase complement(1181037..1183238) Nitrosomonas sp. AL212 10297793 YP_004294342.1 CDS NAL212_1278 NC_015222.1 1183389 1184204 R PFAM: PEP-CTERM bacterial; KEGG: xom:XOO_2260 YapH protein; hypothetical protein complement(1183389..1184204) Nitrosomonas sp. AL212 10297794 YP_004294343.1 CDS NAL212_1279 NC_015222.1 1184616 1185992 D TIGRFAM: Adenylosuccinate lyase; KEGG: nmu:Nmul_A2241 adenylosuccinate lyase; PFAM: Lyase 1, N-terminal; Adenylosuccinate lyase C-terminal/plant; adenylosuccinate lyase 1184616..1185992 Nitrosomonas sp. AL212 10297795 YP_004294344.1 CDS NAL212_1280 NC_015222.1 1186128 1186721 D PFAM: GrpE nucleotide exchange factor; KEGG: neu:NE1950 heat shock protein GrpE; GrpE protein HSP-70 cofactor 1186128..1186721 Nitrosomonas sp. AL212 10297796 YP_004294345.1 CDS NAL212_1281 NC_015222.1 1186790 1188724 D KEGG: nmu:Nmul_A2239 molecular chaperone DnaK; TIGRFAM: Chaperone DnaK; PFAM: Heat shock protein 70; chaperone protein DnaK 1186790..1188724 Nitrosomonas sp. AL212 10297797 YP_004294346.1 CDS NAL212_1282 NC_015222.1 1188872 1189981 D TIGRFAM: Chaperone DnaJ; PFAM: Chaperone DnaJ, C-terminal; Heat shock protein DnaJ, cysteine-rich domain; Heat shock protein DnaJ, N-terminal; KEGG: nmu:Nmul_A2238 chaperone protein DnaJ; SMART: Heat shock protein DnaJ, N-terminal; chaperone protein DnaJ 1188872..1189981 Nitrosomonas sp. AL212 10297798 YP_004294347.1 CDS NAL212_1283 NC_015222.1 1190906 1193266 D TIGRFAM: Competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; Beta-lactamase-like; KEGG: nmu:Nmul_A2506 DNA internalization-related competence protein ComEC/Rec2; SMART: Beta-lactamase-like; DNA internalization-related competence protein ComEC/Rec2 1190906..1193266 Nitrosomonas sp. AL212 10297799 YP_004294348.1 CDS NAL212_1284 NC_015222.1 1193326 1194801 R KEGG: nmu:Nmul_A2410 periplasmic sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; integral membrane sensor signal transduction histidine kinase complement(1193326..1194801) Nitrosomonas sp. AL212 10297800 YP_004294349.1 CDS NAL212_1285 NC_015222.1 1194822 1195211 R KEGG: nmu:Nmul_A2411 response regulator receiver domain-containing protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; response regulator receiver complement(1194822..1195211) Nitrosomonas sp. AL212 10297801 YP_004294350.1 CDS NAL212_1286 NC_015222.1 1195640 1196494 R PFAM: Heat shock protein Hsp33 protein; KEGG: app:CAP2UW1_0252 HSP33 protein; Hsp33 protein complement(1195640..1196494) Nitrosomonas sp. AL212 10297802 YP_004294351.1 CDS NAL212_1289 NC_015222.1 1199379 1200845 D TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold-3; KEGG: mag:amb3536 signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAC motif; PAS/PAC sensor signal transduction histidine kinase 1199379..1200845 Nitrosomonas sp. AL212 10297805 YP_004294352.1 CDS NAL212_1290 NC_015222.1 1200851 1201297 D KEGG: noc:Noc_1704 response regulator receiver; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; response regulator receiver protein 1200851..1201297 Nitrosomonas sp. AL212 10297806 YP_004294353.1 CDS NAL212_1291 NC_015222.1 1201304 1202758 D TIGRFAM: PAS; PFAM: Signal transduction response regulator, receiver domain; PAS fold; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; ATPase-like, ATP-binding domain; KEGG: bps:BPSS1358 sensor kinase protein; SMART: Signal transduction response regulator, receiver domain; PAS; PAC motif; ATPase-like, ATP-binding domain; multi-sensor signal transduction histidine kinase 1201304..1202758 Nitrosomonas sp. AL212 10297807 YP_004294354.1 CDS NAL212_1292 NC_015222.1 1202751 1203383 D KEGG: nmu:Nmul_A1235 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; two component transcriptional regulator, LuxR family 1202751..1203383 Nitrosomonas sp. AL212 10297808 YP_004294355.1 CDS NAL212_1293 NC_015222.1 1203465 1204358 D KEGG: ppr:PBPRB1378 hypothetical protein; hypothetical protein 1203465..1204358 Nitrosomonas sp. AL212 10297809 YP_004294356.1 CDS NAL212_1294 NC_015222.1 1204777 1206360 R PFAM: Transposase, IS66; KEGG: gca:Galf_2413 transposase; transposase IS66 complement(1204777..1206360) Nitrosomonas sp. AL212 10297810 YP_004294357.1 CDS NAL212_1295 NC_015222.1 1206414 1206764 R KEGG: eba:ebB55 transposase, fragment; manually curated; PFAM: Transposase (putative), IS66 Orf2-like; IS66 Orf2 family protein complement(1206414..1206764) Nitrosomonas sp. AL212 10297811 YP_004294358.1 CDS NAL212_1296 NC_015222.1 1206752 1207048 R KEGG: dat:HRM2_44620 hypothetical protein; hypothetical protein complement(1206752..1207048) Nitrosomonas sp. AL212 10297812 YP_004294359.1 CDS NAL212_1298 NC_015222.1 1208312 1208512 D KEGG: nmu:Nmul_A2086 50S ribosomal protein L31; TIGRFAM: Ribosomal protein L31; PFAM: Ribosomal protein L31; 50S ribosomal protein L31 1208312..1208512 Nitrosomonas sp. AL212 10297814 YP_004294360.1 CDS NAL212_1299 NC_015222.1 1208610 1208921 R PFAM: Cupin 2, conserved barrel; KEGG: tdn:Suden_1847 hypothetical protein; cupin 2 barrel domain-containing protein complement(1208610..1208921) Nitrosomonas sp. AL212 10297815 YP_004294361.1 CDS NAL212_1300 NC_015222.1 1209734 1210702 D TIGRFAM: Peptidyl-prolyl cis-trans isomerase, EpsD-type; KEGG: mfa:Mfla_2027 hypothetical protein; peptidyl-tRNA hydrolase 1209734..1210702 Nitrosomonas sp. AL212 10297816 YP_004294362.1 CDS NAL212_1301 NC_015222.1 1210744 1211562 D KEGG: mfa:Mfla_2026 polysaccharide export protein; TIGRFAM: Polysaccharide export EpsE; PFAM: Polysaccharide export protein; Soluble ligand binding domain; polysaccharide export protein EpsE 1210744..1211562 Nitrosomonas sp. AL212 10297817 YP_004294363.1 CDS NAL212_1302 NC_015222.1 1211642 1213006 D KEGG: mfa:Mfla_2025 lipopolysaccharide biosynthesis; TIGRFAM: Chain length determinant protein EpsF; PFAM: Lipopolysaccharide biosynthesis; chain length determinant protein EpsF 1211642..1213006 Nitrosomonas sp. AL212 10297818 YP_004294364.1 CDS NAL212_1303 NC_015222.1 1213036 1213941 D KEGG: mmb:Mmol_1794 chain length determinant protein tyrosine kinase EpsG; TIGRFAM: Tyrosine-protein kinase, chain length determinant protein EpsG; Exopolysaccharide synthesis protein; chain length determinant protein tyrosine kinase EpsG 1213036..1213941 Nitrosomonas sp. AL212 10297819 YP_004294365.1 CDS NAL212_1304 NC_015222.1 1213960 1214850 D KEGG: nmu:Nmul_A0246 hypothetical protein; TIGRFAM: Exosortase 2; Exosortase, EpsH; PFAM: Exosortase EpsH-related; exosortase 2 1213960..1214850 Nitrosomonas sp. AL212 10297820 YP_004294366.1 CDS NAL212_1306 NC_015222.1 1215534 1216220 D KEGG: tbd:Tbd_1791 hypothetical protein; TIGRFAM: Methanolan biosynthesis EpsI; PFAM: Methanolan biosynthesis EpsI; EpsI family protein 1215534..1216220 Nitrosomonas sp. AL212 10297822 YP_004294367.1 CDS NAL212_1307 NC_015222.1 1216484 1217986 D KEGG: meh:M301_0759 hypothetical protein; hypothetical protein 1216484..1217986 Nitrosomonas sp. AL212 10297823 YP_004294368.1 CDS NAL212_1308 NC_015222.1 1218176 1218895 D PFAM: Sulfotransferase; KEGG: tra:Trad_1617 hypothetical protein; chondroitin 4-O-sulfotransferase 1218176..1218895 Nitrosomonas sp. AL212 10297824 YP_004294369.1 CDS NAL212_1309 NC_015222.1 1218936 1219823 D PFAM: Sulfotransferase domain; KEGG: nhl:Nhal_1330 sulfotransferase; sulfotransferase 1218936..1219823 Nitrosomonas sp. AL212 10297825 YP_004294370.1 CDS NAL212_1310 NC_015222.1 1220100 1221242 D KEGG: nde:NIDE1370 hypothetical protein; hypothetical protein 1220100..1221242 Nitrosomonas sp. AL212 10297826 YP_004294371.1 CDS NAL212_1311 NC_015222.1 1221330 1222205 D PFAM: Sulfotransferase domain; KEGG: tra:Trad_2751 sulfotransferase; sulfotransferase 1221330..1222205 Nitrosomonas sp. AL212 10297827 YP_004294372.1 CDS NAL212_1313 NC_015222.1 1223557 1224771 D PFAM: Glycosyl transferase, group 1; KEGG: meh:M301_0760 glycosyl transferase group 1; group 1 glycosyl transferase 1223557..1224771 Nitrosomonas sp. AL212 10297829 YP_004294373.1 CDS NAL212_1315 NC_015222.1 1225333 1226226 D KEGG: ppr:PBPRB1378 hypothetical protein; hypothetical protein 1225333..1226226 Nitrosomonas sp. AL212 10297831 YP_004294374.1 CDS NAL212_1316 NC_015222.1 1227415 1228509 D PFAM: Glycosyl transferase, group 1; KEGG: rba:RB12590 hexosyltransferase; group 1 glycosyl transferase 1227415..1228509 Nitrosomonas sp. AL212 10297832 YP_004294375.1 CDS NAL212_1317 NC_015222.1 1228546 1229334 D manually curated; TIGRFAM: Glycosyl transferase WecB/TagA/CpsF; KEGG: mca:MCA1437 sugar transferase/glycosyl transferase, WecB/TagA/CpsF family protein; PFAM: Glycosyl transferase WecB/TagA/CpsF; WecB/TagA/CpsF family glycosyl transferase 1228546..1229334 Nitrosomonas sp. AL212 10297833 YP_004294376.1 CDS NAL212_1318 NC_015222.1 1229395 1230315 D PFAM: Sulfotransferase domain; KEGG: tbd:Tbd_1782 hypothetical protein; sulfotransferase 1229395..1230315 Nitrosomonas sp. AL212 10297834 YP_004294377.1 CDS NAL212_1319 NC_015222.1 1230373 1230963 R KEGG: nmu:Nmul_A2064 hypothetical protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core; CBS domain-containing protein complement(1230373..1230963) Nitrosomonas sp. AL212 10297835 YP_004294378.1 CDS NAL212_1320 NC_015222.1 1231092 1232534 R TIGRFAM: Peptidase S13, D-Ala-D-Ala carboxypeptidase C; KEGG: nmu:Nmul_A2367 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: Peptidase S13, D-Ala-D-Ala carboxypeptidase C; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase complement(1231092..1232534) Nitrosomonas sp. AL212 10297836 YP_004294379.1 CDS NAL212_1321 NC_015222.1 1232562 1232867 R KEGG: neu:NE0052 hypothetical protein; hypothetical protein complement(1232562..1232867) Nitrosomonas sp. AL212 10297837 YP_004294380.1 CDS NAL212_1322 NC_015222.1 1232904 1233779 R SMART: CoA-binding; TIGRFAM: Succinyl-CoA ligase, alpha subunit; KEGG: nmu:Nmul_A1995 succinyl-CoA synthetase subunit alpha; PFAM: CoA-binding; ATP-citrate lyase/succinyl-CoA ligase; succinyl-CoA synthetase subunit alpha complement(1232904..1233779) Nitrosomonas sp. AL212 10297838 YP_004294381.1 CDS NAL212_1323 NC_015222.1 1233825 1234985 R TIGRFAM: Succinyl-CoA synthetase, beta subunit; KEGG: slt:Slit_0526 succinyl-CoA synthetase, beta subunit; PFAM: ATP-grasp fold, succinyl-CoA synthetase-type; ATP-citrate lyase/succinyl-CoA ligase; succinyl-CoA synthetase subunit beta complement(1233825..1234985) Nitrosomonas sp. AL212 10297839 YP_004294382.1 CDS NAL212_1324 NC_015222.1 1235265 1236620 D KEGG: rme:Rmet_0476 hypothetical protein; hypothetical protein 1235265..1236620 Nitrosomonas sp. AL212 10297840 YP_004294383.1 CDS NAL212_1325 NC_015222.1 1236823 1237200 D KEGG: sde:Sde_2950 hypothetical protein; hypothetical protein 1236823..1237200 Nitrosomonas sp. AL212 10297841 YP_004294384.1 CDS NAL212_1326 NC_015222.1 1237401 1237913 D PFAM: Domain of unknown function DUF1993; KEGG: pfs:PFLU2136 hypothetical protein; hypothetical protein 1237401..1237913 Nitrosomonas sp. AL212 10297842 YP_004294385.1 CDS NAL212_1327 NC_015222.1 1237968 1238207 D hypothetical protein 1237968..1238207 Nitrosomonas sp. AL212 10297843 YP_004294386.1 CDS NAL212_1328 NC_015222.1 1238364 1239059 R PFAM: Domain of unknown function DUF125, transmembrane; KEGG: pin:Ping_1569 hypothetical protein; hypothetical protein complement(1238364..1239059) Nitrosomonas sp. AL212 10297844 YP_004294387.1 CDS NAL212_1329 NC_015222.1 1239240 1240007 D KEGG: pub:SAR11_0946 nitrogen regulation protein NtrY; hypothetical protein 1239240..1240007 Nitrosomonas sp. AL212 10297845 YP_004294388.1 CDS NAL212_1330 NC_015222.1 1240576 1242240 D TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; KEGG: cag:Cagg_0841 response regulator receiver modulated diguanylate cyclase; SMART: Diguanylate cyclase, predicted; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; Signal transduction response regulator, receiver domain; response regulator receiver modulated diguanylate cyclase 1240576..1242240 Nitrosomonas sp. AL212 10297846 YP_004294389.1 CDS NAL212_1331 NC_015222.1 1242286 1243281 R KEGG: vcj:VCD_003183 glutathione synthase/ribosomal protein S6 modification enzyme (glutaminyl transferase); TIGRFAM: Alpha-L-glutamate ligase-related protein; PFAM: Prokaryotic glutathione synthetase, ATP-binding; alpha-L-glutamate ligase-like protein complement(1242286..1243281) Nitrosomonas sp. AL212 10297847 YP_004294390.1 CDS NAL212_1332 NC_015222.1 1243262 1244812 R KEGG: vfm:VFMJ11_0986 hypothetical protein; hypothetical protein complement(1243262..1244812) Nitrosomonas sp. AL212 10297848 YP_004294391.1 CDS NAL212_1333 NC_015222.1 1244812 1245576 R PFAM: Protein of unknown function DUF785; KEGG: dak:DaAHT2_0347 protein of unknown function DUF785; hypothetical protein complement(1244812..1245576) Nitrosomonas sp. AL212 10297849 YP_004294392.1 CDS NAL212_1334 NC_015222.1 1245717 1246121 R KEGG: nmr:Nmar_1456 hypothetical protein; hypothetical protein complement(1245717..1246121) Nitrosomonas sp. AL212 10297850 YP_004294393.1 CDS NAL212_1335 NC_015222.1 1246189 1247946 R KEGG: nmu:Nmul_A0515 dihydrolipoamide dehydrogenase; TIGRFAM: Dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; Biotin/lipoyl attachment; dihydrolipoamide dehydrogenase complement(1246189..1247946) Nitrosomonas sp. AL212 10297851 YP_004294394.1 CDS NAL212_1336 NC_015222.1 1247968 1249233 R TIGRFAM: Gamma-glutamyl phosphate reductase GPR; KEGG: nmu:Nmul_A0514 gamma-glutamyl phosphate reductase; PFAM: Aldehyde dehydrogenase domain; gamma-glutamyl phosphate reductase complement(1247968..1249233) Nitrosomonas sp. AL212 10297852 YP_004294395.1 CDS NAL212_1337 NC_015222.1 1249488 1250348 D PFAM: Metal-dependent hydrolase HDOD; KEGG: app:CAP2UW1_3451 putative signal transduction protein; putative signal transduction protein 1249488..1250348 Nitrosomonas sp. AL212 10297853 YP_004294396.1 CDS NAL212_1338 NC_015222.1 1250967 1251494 D KEGG: mmb:Mmol_1781 protein of unknown function DUF1555; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial; PEP motif putative anchor domain-containing protein 1250967..1251494 Nitrosomonas sp. AL212 10297854 YP_004294397.1 CDS NAL212_1339 NC_015222.1 1251727 1252104 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cpb:Cphamn1_1508 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(1251727..1252104) Nitrosomonas sp. AL212 10297855 YP_004294398.1 CDS NAL212_1340 NC_015222.1 1252151 1254703 R TIGRFAM: Alpha-glucan phosphorylase; KEGG: nmu:Nmul_A0715 alpha-glucan phosphorylase; PFAM: Glycosyl transferase, family 35; alpha-glucan phosphorylase complement(1252151..1254703) Nitrosomonas sp. AL212 10297856 YP_004294399.1 CDS NAL212_1341 NC_015222.1 1254786 1255784 R TIGRFAM: Glucokinase; KEGG: nmu:Nmul_A1872 glucokinase; PFAM: Glucokinase; glucokinase complement(1254786..1255784) Nitrosomonas sp. AL212 10297857 YP_004294400.1 CDS NAL212_1342 NC_015222.1 1255970 1257487 D PFAM: Protein of unknown function DUF853, nucleotide triphosphate hydrolase, putative; KEGG: pol:Bpro_1966 protein of unknown function DUF853, NPT hydrolase putative; hypothetical protein 1255970..1257487 Nitrosomonas sp. AL212 10297858 YP_004294401.1 CDS NAL212_1343 NC_015222.1 1257882 1258967 D KEGG: det:DET0629 D-ala D-ala ligase; PFAM: D-alanine--D-alanine ligase, C-terminal; D-alanine--D-alanine ligase 1257882..1258967 Nitrosomonas sp. AL212 10297859 YP_004294402.1 CDS NAL212_1344 NC_015222.1 1258987 1259457 D PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: gym:GYMC10_0157 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase 1258987..1259457 Nitrosomonas sp. AL212 10297860 YP_004294403.1 CDS NAL212_1345 NC_015222.1 1259477 1260316 D TIGRFAM: Diaminopimelate epimerase; KEGG: mev:Metev_0484 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; diaminopimelate epimerase 1259477..1260316 Nitrosomonas sp. AL212 10297861 YP_004294404.1 CDS NAL212_1346 NC_015222.1 1260410 1260691 D KEGG: mno:Mnod_1082 hypothetical protein; hypothetical protein 1260410..1260691 Nitrosomonas sp. AL212 10297862 YP_004294405.1 CDS NAL212_1347 NC_015222.1 1260776 1262125 R KEGG: azo:azo1327 GTP-binding protein HflX; TIGRFAM: GTP-binding protein, HflX; PFAM: GTP-binding protein, HSR1-related; GTP-binding proten HflX complement(1260776..1262125) Nitrosomonas sp. AL212 10297863 YP_004294406.1 CDS NAL212_1348 NC_015222.1 1262428 1264533 R SMART: RelA/SpoT; Metal-dependent phosphohydrolase, HD domain; TIGRFAM: RelA/SpoT protein; KEGG: neu:NE0368 bifunctional enzyme (p)ppGpp synthetase II and guanosine-3',5'-bisdiphosphate 3'-pyro; PFAM: RelA/SpoT; TGS; Metal-dependent phosphohydrolase, HD subdomain; (p)ppGpp synthetase I SpoT/RelA complement(1262428..1264533) Nitrosomonas sp. AL212 10297864 YP_004294407.1 CDS NAL212_1349 NC_015222.1 1264706 1264912 R KEGG: nmu:Nmul_A0051 DNA-directed RNA polymerase subunit omega; TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase, subunit omega/K/RPABC2; DNA-directed RNA polymerase subunit omega complement(1264706..1264912) Nitrosomonas sp. AL212 10297865 YP_004294408.1 CDS NAL212_1350 NC_015222.1 1265003 1265620 R SMART: Guanylate kinase/L-type calcium channel; TIGRFAM: Guanylate kinase, sub-group; KEGG: nmu:Nmul_A0052 guanylate kinase; PFAM: Guanylate kinase; guanylate kinase complement(1265003..1265620) Nitrosomonas sp. AL212 10297866 YP_004294409.1 CDS NAL212_1351 NC_015222.1 1265660 1267282 R PFAM: Metal-dependent hydrolase HDOD; KEGG: dar:Daro_1602 protein kinase:GAF; putative signal transduction protein complement(1265660..1267282) Nitrosomonas sp. AL212 10297867 YP_004294410.1 CDS NAL212_1352 NC_015222.1 1267478 1267948 R TIGRFAM: Peptide methionine sulphoxide reductase MsrA; KEGG: nmu:Nmul_A2452 methionine sulfoxide reductase A; PFAM: Peptide methionine sulphoxide reductase MsrA; peptide methionine sulfoxide reductase complement(1267478..1267948) Nitrosomonas sp. AL212 10297868 YP_004294411.1 CDS NAL212_1353 NC_015222.1 1267961 1268596 R PFAM: DSBA-like thioredoxin domain; KEGG: nmu:Nmul_A2454 DsbA oxidoreductase; DSBA oxidoreductase complement(1267961..1268596) Nitrosomonas sp. AL212 10297869 YP_004294412.1 CDS NAL212_1354 NC_015222.1 1268678 1269487 R PFAM: Sporulation-related domain; KEGG: neu:NE0365 hypothetical protein; sporulation domain-containing protein complement(1268678..1269487) Nitrosomonas sp. AL212 10297870 YP_004294413.1 CDS NAL212_1355 NC_015222.1 1269512 1271272 R TIGRFAM: Arginyl-tRNA synthetase, class Ic; KEGG: nmu:Nmul_A2456 arginyl-tRNA synthetase; arginyl-tRNA synthetase complement(1269512..1271272) Nitrosomonas sp. AL212 10297871 YP_004294414.1 CDS NAL212_1356 NC_015222.1 1271383 1272123 R TIGRFAM: RNA methyltransferase TrmH, group 3; PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding; KEGG: nmu:Nmul_A1952 RNA methyltransferase TrmH, group 3; SMART: RNA 2-O ribose methyltransferase, substrate binding; TrmH family RNA methyltransferase complement(1271383..1272123) Nitrosomonas sp. AL212 10297872 YP_004294415.1 CDS NAL212_1357 NC_015222.1 1272242 1274467 R TIGRFAM: Ribonuclease R, bacterial; Ribonuclease II/ribonuclease R, bacteria; PFAM: Ribonuclease II/R; Ribonuclease B, N-terminal OB domain; Ribosomal protein S1, RNA-binding domain; KEGG: nmu:Nmul_A1953 VacB/RNase II family 3'-5' exoribonuclease; SMART: Ribonuclease II/R; Cold shock protein; RNA-binding domain, S1; ribonuclease R complement(1272242..1274467) Nitrosomonas sp. AL212 10297873 YP_004294416.1 CDS NAL212_1358 NC_015222.1 1274774 1274953 R hypothetical protein complement(1274774..1274953) Nitrosomonas sp. AL212 10297875 YP_004294417.1 CDS NAL212_1359 NC_015222.1 1275188 1275613 D TIGRFAM: RNA polymerase-binding, DksA; KEGG: nmu:Nmul_A2552 TraR/DksA family transcriptional regulator; TraR/DksA family transcriptional regulator 1275188..1275613 Nitrosomonas sp. AL212 10297876 YP_004294418.1 CDS NAL212_1360 NC_015222.1 1275723 1277852 R KEGG: nmu:Nmul_A2553 polynucleotide phosphorylase/polyadenylase; PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; K Homology, type 1, subgroup; Ribosomal protein S1, RNA-binding domain; TIGRFAM: Polyribonucleotide nucleotidyltransferase; HAMAP: Polyribonucleotide nucleotidyltransferase; SMART: RNA-binding domain, S1; K Homology; polyribonucleotide nucleotidyltransferase complement(1275723..1277852) Nitrosomonas sp. AL212 10297877 YP_004294419.1 CDS NAL212_1361 NC_015222.1 1277985 1278254 R KEGG: nmu:Nmul_A2554 30S ribosomal protein S15; TIGRFAM: Ribosomal protein S15, bacterial-type; PFAM: Ribosomal protein S15; 30S ribosomal protein S15 complement(1277985..1278254) Nitrosomonas sp. AL212 10297878 YP_004294420.1 CDS NAL212_1362 NC_015222.1 1278606 1280069 R PFAM: Dynamin, GTPase domain; KEGG: neu:NE1856 hypothetical protein; dynamin family protein complement(1278606..1280069) Nitrosomonas sp. AL212 10297879 YP_004294421.1 CDS NAL212_1363 NC_015222.1 1280607 1281500 D KEGG: ppr:PBPRB1378 hypothetical protein; hypothetical protein 1280607..1281500 Nitrosomonas sp. AL212 10297880 YP_004294422.1 CDS NAL212_1364 NC_015222.1 1281730 1282758 R KEGG: nmu:Nmul_A1737 glycine cleavage T protein (aminomethyl transferase); TIGRFAM: Folate-binding, YgfZ; PFAM: Glycine cleavage T-protein, N-terminal; folate-binding protein YgfZ complement(1281730..1282758) Nitrosomonas sp. AL212 10297881 YP_004294423.1 CDS NAL212_1365 NC_015222.1 1282881 1283315 D KEGG: nmu:Nmul_A1738 hypothetical protein; hypothetical protein 1282881..1283315 Nitrosomonas sp. AL212 10297882 YP_004294424.1 CDS NAL212_1366 NC_015222.1 1283577 1284026 D KEGG: fba:FIC_01038 hypothetical protein; hypothetical protein 1283577..1284026 Nitrosomonas sp. AL212 10297883 YP_004294425.1 CDS NAL212_1367 NC_015222.1 1284297 1284659 R KEGG: neu:NE0096 hypothetical protein; hypothetical protein complement(1284297..1284659) Nitrosomonas sp. AL212 10297884 YP_004294426.1 CDS NAL212_1368 NC_015222.1 1284724 1285248 R KEGG: aas:Aasi_1042 hypothetical protein; hypothetical protein complement(1284724..1285248) Nitrosomonas sp. AL212 10297885 YP_004294427.1 CDS NAL212_1369 NC_015222.1 1285877 1286746 D KEGG: nmu:Nmul_A0562 phosphoribulokinase; PFAM: Phosphoribulokinase/uridine kinase; phosphoribulokinase 1285877..1286746 Nitrosomonas sp. AL212 10297886 YP_004294428.1 CDS NAL212_1370 NC_015222.1 1286894 1289110 D PFAM: DNA helicase, UvrD/REP type; KEGG: nmu:Nmul_A0563 UvrD/REP helicase; UvrD/REP helicase 1286894..1289110 Nitrosomonas sp. AL212 10297887 YP_004294429.1 CDS NAL212_1371 NC_015222.1 1289212 1291353 R KEGG: cyt:cce_4430 putative sialidase; hypothetical protein complement(1289212..1291353) Nitrosomonas sp. AL212 10297888 YP_004294430.1 CDS NAL212_1372 NC_015222.1 1292013 1294151 R KEGG: cyt:cce_4430 putative sialidase; hypothetical protein complement(1292013..1294151) Nitrosomonas sp. AL212 10297889 YP_004294431.1 CDS NAL212_1373 NC_015222.1 1294817 1295131 R PFAM: BolA protein; KEGG: neu:NE0913 BolA-like protein; BolA family protein complement(1294817..1295131) Nitrosomonas sp. AL212 10297890 YP_004294432.1 CDS NAL212_1375 NC_015222.1 1295516 1296427 R PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: nhl:Nhal_1613 LysR substrate-binding protein; LysR family transcriptional regulator complement(1295516..1296427) Nitrosomonas sp. AL212 10297892 YP_004294433.1 CDS NAL212_1376 NC_015222.1 1296457 1296618 D hypothetical protein 1296457..1296618 Nitrosomonas sp. AL212 10297893 YP_004294434.1 CDS NAL212_1377 NC_015222.1 1296760 1296957 D hypothetical protein 1296760..1296957 Nitrosomonas sp. AL212 10297894 YP_004294435.1 CDS NAL212_1378 NC_015222.1 1297222 1298946 R KEGG: eca:ECA0866 dihydroxyacetone kinase; PFAM: Dak kinase; Dak phosphatase; glycerone kinase complement(1297222..1298946) Nitrosomonas sp. AL212 10297895 YP_004294436.1 CDS NAL212_1379 NC_015222.1 1299107 1302817 R TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; PAS fold; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; KEGG: net:Neut_0219 multi-sensor hybrid histidine kinase; SMART: Signal transduction response regulator, receiver domain; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; PAS; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; multi-sensor hybrid histidine kinase complement(1299107..1302817) Nitrosomonas sp. AL212 10297896 YP_004294437.1 CDS NAL212_1380 NC_015222.1 1303245 1304597 D PFAM: Protein of unknown function DUF2320; KEGG: har:HEAR0712 hypothetical protein; hypothetical protein 1303245..1304597 Nitrosomonas sp. AL212 10297897 YP_004294438.1 CDS NAL212_1381 NC_015222.1 1304594 1306039 D KEGG: mfa:Mfla_2028 sugar transferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase, WcaJ; Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase; UDP-phosphate glucose phosphotransferase 1304594..1306039 Nitrosomonas sp. AL212 10297898 YP_004294439.1 CDS NAL212_1382 NC_015222.1 1306227 1307120 D KEGG: ppr:PBPRB1378 hypothetical protein; hypothetical protein 1306227..1307120 Nitrosomonas sp. AL212 10297899 YP_004294440.1 CDS NAL212_1383 NC_015222.1 1307228 1307551 D PFAM: Ferredoxin, C-terminal; 4Fe-4S binding domain; KEGG: neu:NE0006 7Fe ferredoxin; Ferredoxin, C-terminal protein 1307228..1307551 Nitrosomonas sp. AL212 10297900 YP_004294441.1 CDS NAL212_1384 NC_015222.1 1307580 1310351 D TIGRFAM: DNA repair protein, predicted; KEGG: nmu:Nmul_A0722 hypothetical protein; putative DNA repair protein 1307580..1310351 Nitrosomonas sp. AL212 10297901 YP_004294442.1 CDS NAL212_1385 NC_015222.1 1310344 1313820 D PFAM: DNA helicase, UvrD/REP type; KEGG: nmu:Nmul_A0723 UvrD/REP helicase; UvrD/REP helicase 1310344..1313820 Nitrosomonas sp. AL212 10297902 YP_004294443.1 CDS NAL212_1386 NC_015222.1 1314148 1314957 D KEGG: nmu:Nmul_A2766 ammonia monooxygenase/methane monooxygenase, subunit C; TIGRFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit C; PFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit C; methane monooxygenase/ammonia monooxygenase subunit C 1314148..1314957 Nitrosomonas sp. AL212 10297903 YP_004294444.1 CDS NAL212_1387 NC_015222.1 1315132 1315956 D KEGG: nmu:Nmul_A2765 ammonia monooxygenase; TIGRFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit A; PFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit A; methane monooxygenase/ammonia monooxygenase subunit A 1315132..1315956 Nitrosomonas sp. AL212 10297904 YP_004294445.1 CDS NAL212_1388 NC_015222.1 1315956 1317218 D KEGG: nmu:Nmul_A2764 monooxygenase subunit B protein; TIGRFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit B; PFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit B; methane monooxygenase/ammonia monooxygenase subunit B 1315956..1317218 Nitrosomonas sp. AL212 10297905 YP_004294446.1 CDS NAL212_1389 NC_015222.1 1317432 1317731 D PFAM: Rhodanese-like; KEGG: cyb:CYB_1025 rhodanese domain-containing protein; rhodanese-like protein 1317432..1317731 Nitrosomonas sp. AL212 10297906 YP_004294447.1 CDS NAL212_1390 NC_015222.1 1317885 1319495 R PFAM: Amino acid permease domain; KEGG: tpr:Tpau_0951 amino acid permease-associated region; amino acid permease-associated protein complement(1317885..1319495) Nitrosomonas sp. AL212 10297907 YP_004294448.1 CDS NAL212_1391 NC_015222.1 1319754 1321169 R KEGG: nmu:Nmul_A2075 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; dihydrolipoyl dehydrogenase complement(1319754..1321169) Nitrosomonas sp. AL212 10297908 YP_004294449.1 CDS NAL212_1392 NC_015222.1 1321564 1323312 R TIGRFAM: Gamma-glutamyltranspeptidase; KEGG: bav:BAV2817 gamma-glutamyltranspeptidase; PFAM: Gamma-glutamyltranspeptidase; gamma-glutamyltransferase complement(1321564..1323312) Nitrosomonas sp. AL212 10297909 YP_004294450.1 CDS NAL212_1393 NC_015222.1 1323556 1324035 D KEGG: dba:Dbac_1033 transport-associated; PFAM: Transport-associated; SMART: Transport-associated and nodulation domain, bacteria; transport-associated protein 1323556..1324035 Nitrosomonas sp. AL212 10297910 YP_004294451.1 CDS NAL212_1394 NC_015222.1 1324044 1325186 D PFAM: Protein of unknown function DUF1207; KEGG: nmu:Nmul_A0641 hypothetical protein; hypothetical protein 1324044..1325186 Nitrosomonas sp. AL212 10297911 YP_004294452.1 CDS NAL212_1395 NC_015222.1 1325459 1326424 R PFAM: Ribosomal RNA adenine methylase transferase; KEGG: mms:mma_1953 hypothetical protein; ribosomal RNA adenine methylase transferase complement(1325459..1326424) Nitrosomonas sp. AL212 10297912 YP_004294453.1 CDS NAL212_1396 NC_015222.1 1326634 1326819 D hypothetical protein 1326634..1326819 Nitrosomonas sp. AL212 10297913 YP_004294454.1 CDS NAL212_1397 NC_015222.1 1326962 1328209 D KEGG: hel:HELO_4305 serine-type D-Ala-D-Ala carboxypeptidase; PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal; Sporulation-related domain; serine-type D-Ala-D-Ala carboxypeptidase 1326962..1328209 Nitrosomonas sp. AL212 10297914 YP_004294455.1 CDS NAL212_1398 NC_015222.1 1328401 1329066 R KEGG: nmu:Nmul_A0069 tRNA (guanine-N(7)-)-methyltransferase; TIGRFAM: tRNA (guanine-N-7) methyltransferase; PFAM: tRNA (guanine-N-7) methyltransferase; tRNA (guanine-N(7)-)-methyltransferase complement(1328401..1329066) Nitrosomonas sp. AL212 10297915 YP_004294456.1 CDS NAL212_1399 NC_015222.1 1329098 1329913 R PFAM: Thiazole biosynthesis; KEGG: nmu:Nmul_A0070 thiazole synthase; thiazole biosynthesis family protein complement(1329098..1329913) Nitrosomonas sp. AL212 10297916 YP_004294457.1 CDS NAL212_1400 NC_015222.1 1329955 1330158 R KEGG: net:Neut_0324 thiamine biosynthesis protein ThiS; TIGRFAM: ThiS, thiamine-biosynthesis; PFAM: ThiamineS; thiamine biosynthesis protein ThiS complement(1329955..1330158) Nitrosomonas sp. AL212 10297917 YP_004294458.1 CDS NAL212_1401 NC_015222.1 1330381 1331814 R PFAM: Peptidase M10B, serralysin, C-terminal; KEGG: npu:Npun_F4619 hemolysin-type calcium-binding region; SMART: Peptidase, metallopeptidase; serralysin complement(1330381..1331814) Nitrosomonas sp. AL212 10297918 YP_004294459.1 CDS NAL212_1402 NC_015222.1 1332759 1333622 D PFAM: Nucleotide-binding protein, predicted, TIR-like; KEGG: cps:CPS_2866 hypothetical protein; nucleotide-binding protein 1332759..1333622 Nitrosomonas sp. AL212 10297919 YP_004294460.1 CDS NAL212_1404 NC_015222.1 1334133 1335182 R PFAM: Filamentation induced by cAMP/death on curing-related; Protein of unknown function DUF977; KEGG: net:Neut_2415 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic complement(1334133..1335182) Nitrosomonas sp. AL212 10297921 YP_004294461.1 CDS NAL212_1405 NC_015222.1 1335351 1335572 D KEGG: ton:TON_1836 GalE-2 UDP-glucose 4-epimerase; hypothetical protein 1335351..1335572 Nitrosomonas sp. AL212 10297922 YP_004294462.1 CDS NAL212_1406 NC_015222.1 1335964 1337736 D KEGG: mca:MCA0716 hypothetical protein; hypothetical protein 1335964..1337736 Nitrosomonas sp. AL212 10297923 YP_004294463.1 CDS NAL212_1407 NC_015222.1 1337865 1338155 D KEGG: pin:Ping_1241 hypothetical protein; hypothetical protein 1337865..1338155 Nitrosomonas sp. AL212 10297924 YP_004294464.1 CDS NAL212_1409 NC_015222.1 1338549 1340132 R PFAM: Transposase, IS66; KEGG: gca:Galf_2413 transposase; transposase IS66 complement(1338549..1340132) Nitrosomonas sp. AL212 10297926 YP_004294465.1 CDS NAL212_1410 NC_015222.1 1340186 1340557 R PFAM: Transposase (putative), IS66 Orf2-like; KEGG: eba:ebB55 transposase, fragment; IS66 Orf2 family protein complement(1340186..1340557) Nitrosomonas sp. AL212 10297927 YP_004294466.1 CDS NAL212_1411 NC_015222.1 1340524 1340820 R KEGG: dat:HRM2_44620 hypothetical protein; hypothetical protein complement(1340524..1340820) Nitrosomonas sp. AL212 10297928 YP_004294467.1 CDS NAL212_1413 NC_015222.1 1341117 1342568 R KEGG: nmu:Nmul_A1726 RND efflux system, outer membrane lipoprotein, NodT; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein complement(1341117..1342568) Nitrosomonas sp. AL212 10297930 YP_004294468.1 CDS NAL212_1414 NC_015222.1 1342537 1345779 R KEGG: nmu:Nmul_A1727 hydrophobe/amphiphile efflux-1 HAE1; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein; hydrophobe/amphiphile efflux-1 (HAE1) family transporter complement(1342537..1345779) Nitrosomonas sp. AL212 10297931 YP_004294469.1 CDS NAL212_1415 NC_015222.1 1345803 1346966 R KEGG: nmu:Nmul_A1728 secretion protein HlyD; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit complement(1345803..1346966) Nitrosomonas sp. AL212 10297932 YP_004294470.1 CDS NAL212_1418 NC_015222.1 1348486 1348845 D KEGG: pin:Ping_0634 hypothetical protein; hypothetical protein 1348486..1348845 Nitrosomonas sp. AL212 10297935 YP_004294471.1 CDS NAL212_1419 NC_015222.1 1348945 1349844 R PFAM: Integrase, catalytic core; KEGG: pde:Pden_3846 integrase catalytic subunit; integrase catalytic region complement(1348945..1349844) Nitrosomonas sp. AL212 10297936 YP_004294472.1 CDS NAL212_1420 NC_015222.1 1349951 1351105 D PFAM: Integrase, catalytic core; KEGG: bac:BamMC406_6587 integrase catalytic region; integrase catalytic region 1349951..1351105 Nitrosomonas sp. AL212 10297937 YP_004294473.1 CDS NAL212_1423 NC_015222.1 1352328 1353827 R PFAM: Integrase, catalytic core; KEGG: mms:mma_2809 transposase IstA; integrase catalytic region complement(1352328..1353827) Nitrosomonas sp. AL212 10297940 YP_004294474.1 CDS NAL212_1425 NC_015222.1 1354319 1356007 R PFAM: Multicopper oxidase, type 2; Multicopper oxidase, type 3; Multicopper oxidase, type 1; KEGG: sde:Sde_0315 phosphoenolpyruvate-protein phosphotransferase; multicopper oxidase type 2 complement(1354319..1356007) Nitrosomonas sp. AL212 10297942 YP_004294475.1 CDS NAL212_1426 NC_015222.1 1356171 1357940 R KEGG: rsl:RPSI07_mp0837 exported protein of unknown function; hypothetical protein complement(1356171..1357940) Nitrosomonas sp. AL212 10297943 YP_004294476.1 CDS NAL212_1427 NC_015222.1 1358455 1360950 D KEGG: pst:PSPTO_4627 hypothetical protein; hypothetical protein 1358455..1360950 Nitrosomonas sp. AL212 10297944 YP_004294477.1 CDS NAL212_1428 NC_015222.1 1361127 1361495 R SMART: Helix-turn-helix type 3; KEGG: neu:NE1587 helix-hairpin-helix DNA-binding motif-containing protein; XRE family transcriptional regulator complement(1361127..1361495) Nitrosomonas sp. AL212 10297945 YP_004294478.1 CDS NAL212_1429 NC_015222.1 1361514 1361816 R PFAM: Protein of unknown function DUF2136; KEGG: neu:NE1588 hypothetical protein; hypothetical protein complement(1361514..1361816) Nitrosomonas sp. AL212 10297946 YP_004294479.1 CDS NAL212_1430 NC_015222.1 1361853 1362938 R PFAM: Protein of unknown function DUF3596; Integrase, catalytic core, phage; KEGG: lpf:lpl0179 hypothetical protein; hypothetical protein complement(1361853..1362938) Nitrosomonas sp. AL212 10297947 YP_004294480.1 CDS NAL212_1431 NC_015222.1 1362914 1363108 R KEGG: ppg:PputGB1_1182 putative phage excisionase; hypothetical protein complement(1362914..1363108) Nitrosomonas sp. AL212 10297948 YP_004294481.1 CDS NAL212_1432 NC_015222.1 1363105 1363524 R KEGG: meh:M301_2557 hypothetical protein; hypothetical protein complement(1363105..1363524) Nitrosomonas sp. AL212 10297949 YP_004294482.1 CDS NAL212_1433 NC_015222.1 1363605 1363874 R KEGG: mfr:MFE_02050 hypothetical protein; hypothetical protein complement(1363605..1363874) Nitrosomonas sp. AL212 10297950 YP_004294483.1 CDS NAL212_1434 NC_015222.1 1363852 1365477 R PFAM: Replication endonuclease, probable, phage; KEGG: mfa:Mfla_0975 bacteriophage replication gene A; replication protein A complement(1363852..1365477) Nitrosomonas sp. AL212 10297951 YP_004294484.1 CDS NAL212_1435 NC_015222.1 1366129 1366776 R TIGRFAM: 2-phosphoglycolate phosphatase, prokaryotic; HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; KEGG: neu:NE2546 HAD family hydrolase; PFAM: Haloacid dehalogenase-like hydrolase; phosphoglycolate phosphatase complement(1366129..1366776) Nitrosomonas sp. AL212 10297953 YP_004294485.1 CDS NAL212_1436 NC_015222.1 1366806 1367513 R TIGRFAM: Ubiquinone biosynthesis O-methyltransferase; KEGG: neu:NE2547 3-demethylubiquinone-9 3-methyltransferase; PFAM: Methyltransferase type 11; ubiquinone biosynthesis O-methyltransferase complement(1366806..1367513) Nitrosomonas sp. AL212 10297954 YP_004294486.1 CDS NAL212_1437 NC_015222.1 1367524 1368864 R KEGG: nmu:Nmul_A2187 N-ethylammeline chlorohydrolase; PFAM: Amidohydrolase 1; S-adenosylhomocysteine deaminase complement(1367524..1368864) Nitrosomonas sp. AL212 10297955 YP_004294487.1 CDS NAL212_1438 NC_015222.1 1368938 1369615 R PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: neu:NE2548 outer membrane protein; OmpA/MotB domain-containing protein complement(1368938..1369615) Nitrosomonas sp. AL212 10297956 YP_004294488.1 CDS NAL212_1439 NC_015222.1 1370068 1370799 D KEGG: neu:NE2549 ATPase component ABC-type multidrug transport system; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter 1370068..1370799 Nitrosomonas sp. AL212 10297957 YP_004294489.1 CDS NAL212_1440 NC_015222.1 1370819 1371562 D KEGG: neu:NE2550 putative ABC-2 type transport system permease protein; putative ABC-2 type transport system permease protein 1370819..1371562 Nitrosomonas sp. AL212 10297958 YP_004294490.1 CDS NAL212_1441 NC_015222.1 1371583 1372938 D PFAM: ABC-type uncharacterised transport system; KEGG: nmu:Nmul_A0583 hypothetical protein; ABC transporter 1371583..1372938 Nitrosomonas sp. AL212 10297959 YP_004294491.1 CDS NAL212_1442 NC_015222.1 1372935 1373792 D KEGG: mfa:Mfla_0685 hypothetical protein; hypothetical protein 1372935..1373792 Nitrosomonas sp. AL212 10297960 YP_004294492.1 CDS NAL212_1443 NC_015222.1 1373807 1374637 D SMART: DNA glycosylase/AP lyase, catalytic domain; TIGRFAM: DNA glycosylase/AP lyase; KEGG: nmu:Nmul_A0582 formamidopyrimidine-DNA glycosylase; PFAM: DNA glycosylase/AP lyase, catalytic domain; DNA glycosylase/AP lyase, H2TH DNA-binding; Zinc finger, DNA glycosylase/AP lyase/isoleucyl tRNA synthetase; formamidopyrimidine-DNA glycosylase 1373807..1374637 Nitrosomonas sp. AL212 10297961 YP_004294493.1 CDS NAL212_1444 NC_015222.1 1374768 1375607 D TIGRFAM: Pyrroline-5-carboxylate reductase; KEGG: nmu:Nmul_A0581 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; pyrroline-5-carboxylate reductase 1374768..1375607 Nitrosomonas sp. AL212 10297962 YP_004294494.1 CDS NAL212_1445 NC_015222.1 1375803 1376378 D PFAM: Uncharacterised protein family Ycf19; KEGG: nmu:Nmul_A0580 hypothetical protein; hypothetical protein 1375803..1376378 Nitrosomonas sp. AL212 10297963 YP_004294495.1 CDS NAL212_1446 NC_015222.1 1376381 1376722 D PFAM: Protein of unknown function DUF167; KEGG: slt:Slit_2755 protein of unknown function DUF167; hypothetical protein 1376381..1376722 Nitrosomonas sp. AL212 10297964 YP_004294496.1 CDS NAL212_1447 NC_015222.1 1376713 1377174 D KEGG: nmu:Nmul_A0198 phosphohistidine phosphatase, SixA; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1; putative phosphohistidine phosphatase, SixA 1376713..1377174 Nitrosomonas sp. AL212 10297965 YP_004294497.1 CDS NAL212_1448 NC_015222.1 1377204 1377758 D KEGG: mfa:Mfla_2138 ribosomal large subunit pseudouridine synthase E; TIGRFAM: Pseudouridine synthase, RsuA/RluB/E/F; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; pseudouridine synthase Rsu 1377204..1377758 Nitrosomonas sp. AL212 10297966 YP_004294498.1 CDS NAL212_1449 NC_015222.1 1378073 1379263 D PFAM: Fatty acid desaturase, type 1; KEGG: nmu:Nmul_A2141 fatty acid desaturase; fatty acid desaturase 1378073..1379263 Nitrosomonas sp. AL212 10297967 YP_004294499.1 CDS NAL212_1450 NC_015222.1 1379312 1379467 R KEGG: mfa:Mfla_0311 50S ribosomal protein L33; TIGRFAM: Ribosomal protein L33; PFAM: Ribosomal protein L33; 50S ribosomal protein L33 complement(1379312..1379467) Nitrosomonas sp. AL212 10297968 YP_004294500.1 CDS NAL212_1451 NC_015222.1 1379507 1379743 R KEGG: neu:NE1465 50S ribosomal protein L28; TIGRFAM: Ribosomal protein L28; PFAM: Ribosomal protein L28; 50S ribosomal protein L28 complement(1379507..1379743) Nitrosomonas sp. AL212 10297969 YP_004294501.1 CDS NAL212_1452 NC_015222.1 1379801 1380475 R KEGG: nmu:Nmul_A2138 DNA repair protein RadC; TIGRFAM: Uncharacterised protein family UPF0758; PFAM: Uncharacterised protein family UPF0758; DNA repair protein RadC complement(1379801..1380475) Nitrosomonas sp. AL212 10297970 YP_004294502.1 CDS NAL212_1453 NC_015222.1 1380675 1381901 D TIGRFAM: Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; KEGG: nmu:Nmul_A2137 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; PFAM: DNA/pantothenate metabolism flavoprotein, C-terminal; Flavoprotein; phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase 1380675..1381901 Nitrosomonas sp. AL212 10297971 YP_004294503.1 CDS NAL212_1454 NC_015222.1 1381885 1382337 D PFAM: DeoxyUTP pyrophosphatase domain; TIGRFAM: DeoxyUTP pyrophosphatase; HAMAP: DeoxyUTP pyrophosphatase; KEGG: nmu:Nmul_A2136 deoxyuridine 5'-triphosphate nucleotidohydrolase; deoxyuridine 5'-triphosphate nucleotidohydrolase 1381885..1382337 Nitrosomonas sp. AL212 10297972 YP_004294504.1 CDS NAL212_1456 NC_015222.1 1383445 1384794 R TIGRFAM: Signal recognition particle, SRP; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, M-domain; Signal recognition particle, SRP54 subunit, helical bundle; KEGG: nmu:Nmul_A2134 signal recognition particle protein; SMART: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; ATPase, AAA+ type, core; signal recognition particle protein complement(1383445..1384794) Nitrosomonas sp. AL212 10297974 YP_004294505.1 CDS NAL212_1457 NC_015222.1 1384931 1385773 D PFAM: Cytochrome c assembly protein; KEGG: nmu:Nmul_A2133 cytochrome c assembly protein; cytochrome c assembly protein 1384931..1385773 Nitrosomonas sp. AL212 10297975 YP_004294506.1 CDS NAL212_1458 NC_015222.1 1388542 1388829 R TIGRFAM: CRISPR associated protein Cas2; KEGG: avn:Avin_31570 CRISPR-associated protein Cas2; CRISPR-associated protein Cas2 complement(1388542..1388829) Nitrosomonas sp. AL212 10297976 YP_004294507.1 CDS NAL212_1459 NC_015222.1 1388848 1389882 R KEGG: cvi:CV_1229 hypothetical protein; TIGRFAM: CRISPR-associated protein Cas1, DVULG subtype; CRISPR-associated protein Cas1; PFAM: CRISPR-associated protein Cas1; CRISPR-associated protein Cas1 complement(1388848..1389882) Nitrosomonas sp. AL212 10297977 YP_004294508.1 CDS NAL212_1460 NC_015222.1 1389885 1390520 R KEGG: cvi:CV_1228 hypothetical protein; TIGRFAM: CRISPR-associated protein Cas4; PFAM: Dna2/Cas4, domain of unknown function DUF83; CRISPR-associated protein Cas4 complement(1389885..1390520) Nitrosomonas sp. AL212 10297978 YP_004294509.1 CDS NAL212_1461 NC_015222.1 1390551 1390727 R KEGG: kla:KLLA0E07789g hypothetical protein; hypothetical protein complement(1390551..1390727) Nitrosomonas sp. AL212 10297979 YP_004294510.1 CDS NAL212_1462 NC_015222.1 1390738 1391613 R KEGG: mfa:Mfla_0604 CRISPR-associated Csh2 family protein; TIGRFAM: CRISPR-associated protein Csd2; CRISPR-associated protein TM1801; PFAM: CRISPR-associated protein TM1801; CRISPR-associated protein, Csd2 family complement(1390738..1391613) Nitrosomonas sp. AL212 10297980 YP_004294511.1 CDS NAL212_1463 NC_015222.1 1391625 1393451 R KEGG: mfa:Mfla_0603 CRISPR-associated Csd1 family protein; TIGRFAM: CRISPR-associated protein, Csd1-type; PFAM: CRISPR-associated protein, Csd1-type; CRISPR-associated protein, Csd1 family complement(1391625..1393451) Nitrosomonas sp. AL212 10297981 YP_004294512.1 CDS NAL212_1464 NC_015222.1 1393448 1394131 R KEGG: mfa:Mfla_0602 CRISPR-associated Cas5d family protein; TIGRFAM: CRISPR-associated protein, Cas5d-type; CRISPR-associated protein Cas5, N-terminal domain; PFAM: CRISPR-associated protein, Cas5; CRISPR-associated protein Cas5 family complement(1393448..1394131) Nitrosomonas sp. AL212 10297982 YP_004294513.1 CDS NAL212_1465 NC_015222.1 1394153 1396417 R TIGRFAM: CRISPR-associated HD domain; Helicase Cas3, CRISPR-associated, core; Uncharacterised protein family HDIG; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Metal-dependent phosphohydrolase, HD subdomain; KEGG: mfa:Mfla_0601 metal dependent phosphohydrolase; SMART: DEAD-like helicase, N-terminal; Metal-dependent phosphohydrolase, HD domain; metal dependent phosphohydrolase complement(1394153..1396417) Nitrosomonas sp. AL212 10297983 YP_004294514.1 CDS NAL212_1467 NC_015222.1 1397536 1401039 R SMART: Polymerase/histidinol phosphatase, N-terminal; TIGRFAM: DNA polymerase III, alpha subunit; KEGG: nmu:Nmul_A2731 DNA polymerase III, alpha subunit; PFAM: Bacterial DNA polymerase III, alpha subunit; PHP, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; DNA polymerase III subunit alpha complement(1397536..1401039) Nitrosomonas sp. AL212 10297988 YP_004294515.1 CDS NAL212_1468 NC_015222.1 1401102 1402469 D PFAM: Peptidase U32; KEGG: neu:NE1979 U32 family peptidase; peptidase U32 1401102..1402469 Nitrosomonas sp. AL212 10297989 YP_004294516.1 CDS NAL212_1469 NC_015222.1 1402425 1403474 R PFAM: Alpha/beta hydrolase fold-1; KEGG: neu:NE1289 esterase/lipase/thioesterase family protein; alpha/beta hydrolase fold protein complement(1402425..1403474) Nitrosomonas sp. AL212 10297990 YP_004294517.1 CDS NAL212_1470 NC_015222.1 1403776 1404999 R KEGG: dal:Dalk_5147 peptidoglycan-binding domain 1 protein; PFAM: Type II secretion system protein E; SMART: ATPase, AAA+ type, core; type II secretion system protein E complement(1403776..1404999) Nitrosomonas sp. AL212 10297991 YP_004294518.1 CDS NAL212_1471 NC_015222.1 1404999 1405712 R PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: chu:CHU_2436 outer membrane protein; OmpA/MotB domain-containing protein complement(1404999..1405712) Nitrosomonas sp. AL212 10297992 YP_004294519.1 CDS NAL212_1472 NC_015222.1 1405884 1406084 D hypothetical protein 1405884..1406084 Nitrosomonas sp. AL212 10297993 YP_004294520.1 CDS NAL212_1473 NC_015222.1 1406169 1407440 D KEGG: ssm:Spirs_2557 hypothetical protein; hypothetical protein 1406169..1407440 Nitrosomonas sp. AL212 10297994 YP_004294521.1 CDS NAL212_1474 NC_015222.1 1407639 1409240 R KEGG: tbd:Tbd_1578 MFS family transporter; manually curated; PFAM: Major facilitator superfamily, enterobactin exporter EntS; hypothetical protein complement(1407639..1409240) Nitrosomonas sp. AL212 10297995 YP_004294522.1 CDS NAL212_1475 NC_015222.1 1409486 1410280 R KEGG: net:Neut_1628 carbonate dehydratase; PFAM: Carbonic anhydrase, alpha-class, catalytic domain; carbonate dehydratase complement(1409486..1410280) Nitrosomonas sp. AL212 10297996 YP_004294523.1 CDS NAL212_1476 NC_015222.1 1410312 1410566 R KEGG: neu:NE0605 hypothetical protein; hypothetical protein complement(1410312..1410566) Nitrosomonas sp. AL212 10297997 YP_004294524.1 CDS NAL212_1477 NC_015222.1 1411142 1413658 D PFAM: Acyl-CoA dehydrogenase, C-termina, bacterial type; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; KEGG: neu:NE1548 acyl-CoA dehydrogenase; hypothetical protein 1411142..1413658 Nitrosomonas sp. AL212 10297998 YP_004294525.1 CDS NAL212_1478 NC_015222.1 1413723 1415579 D KEGG: neu:NE1549 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; long-chain-fatty-acid--CoA ligase 1413723..1415579 Nitrosomonas sp. AL212 10297999 YP_004294526.1 CDS NAL212_1480 NC_015222.1 1416629 1416988 D KEGG: slt:Slit_2774 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease; HNH endonuclease 1416629..1416988 Nitrosomonas sp. AL212 10298001 YP_004294527.1 CDS NAL212_1481 NC_015222.1 1417103 1417543 D KEGG: sil:SPO2326 hypothetical protein; hypothetical protein 1417103..1417543 Nitrosomonas sp. AL212 10298002 YP_004294528.1 CDS NAL212_1482 NC_015222.1 1417538 1418062 R manually curated; PFAM: Histidine phosphatase superfamily, clade-1; KEGG: nhl:Nhal_1105 phosphoglycerate mutase; SMART: Histidine phosphatase superfamily, clade-1; putative phosphohistidine phosphatase, SixA complement(1417538..1418062) Nitrosomonas sp. AL212 10298003 YP_004294529.1 CDS NAL212_1483 NC_015222.1 1418121 1419605 D TIGRFAM: Exopolyphosphatase; KEGG: abo:ABO_2461 hypothetical protein; PFAM: Ppx/GppA phosphatase; Ppx/GppA phosphatase 1418121..1419605 Nitrosomonas sp. AL212 10298004 YP_004294530.1 CDS NAL212_1484 NC_015222.1 1419629 1421710 R PFAM: Polyphosphate kinase; TIGRFAM: Polyphosphate kinase; HAMAP: Polyphosphate kinase; KEGG: nhl:Nhal_2311 polyphosphate kinase; polyphosphate kinase complement(1419629..1421710) Nitrosomonas sp. AL212 10298005 YP_004294531.1 CDS NAL212_1485 NC_015222.1 1421812 1422897 R KEGG: tin:Tint_1847 glucose sorbosone dehydrogenase; glucose sorbosone dehydrogenase complement(1421812..1422897) Nitrosomonas sp. AL212 10298006 YP_004294532.1 CDS NAL212_1486 NC_015222.1 1423021 1424148 R KEGG: geo:Geob_1384 glycosyl transferase group 1; hypothetical protein complement(1423021..1424148) Nitrosomonas sp. AL212 10298007 YP_004294533.1 CDS NAL212_1487 NC_015222.1 1424185 1424997 R PFAM: Aldehyde-lyase domain; KEGG: mvn:Mevan_0407 HpcH/HpaI aldolase; HpcH/HpaI aldolase complement(1424185..1424997) Nitrosomonas sp. AL212 10298008 YP_004294534.1 CDS NAL212_1488 NC_015222.1 1425048 1425560 R KEGG: dfe:Dfer_3931 dTDP-4-dehydrorhamnose 3,5-epimerase; dTDP-4-dehydrorhamnose 3,5-epimerase complement(1425048..1425560) Nitrosomonas sp. AL212 10298009 YP_004294535.1 CDS NAL212_1489 NC_015222.1 1425760 1427847 R PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: caa:Caka_1487 TonB-dependent receptor; TonB-dependent receptor complement(1425760..1427847) Nitrosomonas sp. AL212 10298010 YP_004294536.1 CDS NAL212_1490 NC_015222.1 1428127 1428600 R PFAM: Domain of unknown function DUF2874; KEGG: mca:MCA1928 hypothetical protein; hypothetical protein complement(1428127..1428600) Nitrosomonas sp. AL212 10298011 YP_004294537.1 CDS NAL212_1491 NC_015222.1 1428916 1429713 D KEGG: nhl:Nhal_3531 hypothetical protein; hypothetical protein 1428916..1429713 Nitrosomonas sp. AL212 10298012 YP_004294538.1 CDS NAL212_1492 NC_015222.1 1429759 1429947 D hypothetical protein 1429759..1429947 Nitrosomonas sp. AL212 10298013 YP_004294539.1 CDS NAL212_1493 NC_015222.1 1429938 1430918 R PFAM: Transposase, IS4-like; KEGG: atu:Atu4436 IS5 family transposase; transposase IS4 family protein complement(1429938..1430918) Nitrosomonas sp. AL212 10298014 YP_004294540.1 CDS NAL212_1494 NC_015222.1 1431137 1434430 R KEGG: nmu:Nmul_A1113 heavy metal efflux pump CzcA; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein; CzcA family heavy metal efflux pump complement(1431137..1434430) Nitrosomonas sp. AL212 10298015 YP_004294541.1 CDS NAL212_1495 NC_015222.1 1434612 1434908 D KEGG: dat:HRM2_44620 hypothetical protein; hypothetical protein 1434612..1434908 Nitrosomonas sp. AL212 10298016 YP_004294542.1 CDS NAL212_1496 NC_015222.1 1434896 1435246 D KEGG: eba:ebB55 transposase, fragment; manually curated; PFAM: Transposase (putative), IS66 Orf2-like; IS66 Orf2 family protein 1434896..1435246 Nitrosomonas sp. AL212 10298017 YP_004294543.1 CDS NAL212_1497 NC_015222.1 1435300 1436883 D PFAM: Transposase, IS66; KEGG: gca:Galf_2413 transposase; transposase IS66 1435300..1436883 Nitrosomonas sp. AL212 10298018 YP_004294544.1 CDS NAL212_1498 NC_015222.1 1437138 1437260 D hypothetical protein 1437138..1437260 Nitrosomonas sp. AL212 10298019 YP_004294545.1 CDS NAL212_1499 NC_015222.1 1437302 1439989 R PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: rce:RC1_0095 type III restriction enzyme, res subunit, putative; type III restriction protein res subunit complement(1437302..1439989) Nitrosomonas sp. AL212 10298020 YP_004294546.1 CDS NAL212_1500 NC_015222.1 1439986 1440165 R KEGG: gca:Galf_1665 hypothetical protein; hypothetical protein complement(1439986..1440165) Nitrosomonas sp. AL212 10298021 YP_004294547.1 CDS NAL212_1501 NC_015222.1 1440162 1440677 R PFAM: Zeta toxin; KEGG: gca:Galf_1664 hypothetical protein; Zeta toxin family protein complement(1440162..1440677) Nitrosomonas sp. AL212 10298022 YP_004294548.1 CDS NAL212_1502 NC_015222.1 1440674 1440805 R hypothetical protein complement(1440674..1440805) Nitrosomonas sp. AL212 10298023 YP_004294549.1 CDS NAL212_1503 NC_015222.1 1440802 1442499 R PFAM: DNA methylase N-4/N-6; KEGG: avn:Avin_52350 adenine specific DNA methylase N-4/N-6; DNA methylase N-4/N-6 domain-containing protein complement(1440802..1442499) Nitrosomonas sp. AL212 10298024 YP_004294550.1 CDS NAL212_1505 NC_015222.1 1443122 1443904 R KEGG: pst:PSPTO_B0039 transposase/IS protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; IstB domain-containing protein ATP-binding protein complement(1443122..1443904) Nitrosomonas sp. AL212 10298026 YP_004294551.1 CDS NAL212_1506 NC_015222.1 1443901 1444923 R PFAM: Integrase, catalytic core; Resolvase, helix-turn-helix domain; KEGG: pst:PSPTO_B0040 ISPsy4, transposase; integrase catalytic region complement(1443901..1444923) Nitrosomonas sp. AL212 10298027 YP_004294552.1 CDS NAL212_1509 NC_015222.1 1447949 1448791 R PFAM: KilA, N-terminal/APSES-type HTH, DNA-binding; KEGG: plu:plu1205 hypothetical protein; KilA, /APSES-type HTH DNA-binding domain complement(1447949..1448791) Nitrosomonas sp. AL212 10298030 YP_004294553.1 CDS NAL212_1510 NC_015222.1 1448943 1451798 R KEGG: rce:RC1_0099 helicase, SNF2 family, putative; PFAM: SNF2-related; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; SNF2-like protein complement(1448943..1451798) Nitrosomonas sp. AL212 10298031 YP_004294554.1 CDS NAL212_1511 NC_015222.1 1452079 1452435 D KEGG: tgr:Tgr7_1426 hypothetical protein; hypothetical protein 1452079..1452435 Nitrosomonas sp. AL212 10298032 YP_004294555.1 CDS NAL212_1512 NC_015222.1 1452432 1452887 D KEGG: dth:DICTH_0549 MalF protein; hypothetical protein 1452432..1452887 Nitrosomonas sp. AL212 10298033 YP_004294556.1 CDS NAL212_1513 NC_015222.1 1453174 1454403 R KEGG: neu:NE2132 aspartate kinase; TIGRFAM: Aspartate kinase domain; Aspartate kinase, monofunctional class; PFAM: Aspartate/glutamate/uridylate kinase; Amino acid-binding ACT; aspartate kinase complement(1453174..1454403) Nitrosomonas sp. AL212 10298035 YP_004294557.1 CDS NAL212_1514 NC_015222.1 1454617 1455627 R TIGRFAM: Tetraacyldisaccharide 4'-kinase; KEGG: net:Neut_2110 tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide 4'-kinase; tetraacyldisaccharide 4'-kinase complement(1454617..1455627) Nitrosomonas sp. AL212 10298036 YP_004294558.1 CDS NAL212_1515 NC_015222.1 1455902 1456810 D KEGG: neu:NE0456 esterase/lipase/thioesterase family protein; esterase/lipase/thioesterase family protein 1455902..1456810 Nitrosomonas sp. AL212 10298037 YP_004294559.1 CDS NAL212_1516 NC_015222.1 1456904 1458586 R KEGG: neu:NE0783 hypothetical protein; hypothetical protein complement(1456904..1458586) Nitrosomonas sp. AL212 10298038 YP_004294560.1 CDS NAL212_1517 NC_015222.1 1458873 1459733 R PFAM: Radical SAM; KEGG: neu:NE1518 hypothetical protein; Radical SAM domain-containing protein complement(1458873..1459733) Nitrosomonas sp. AL212 10298039 YP_004294561.1 CDS NAL212_1518 NC_015222.1 1459775 1460224 D TIGRFAM: queuosine biosynthesis protein QueD; KEGG: nmu:Nmul_A1944 putative 6-pyruvoyl tetrahydropterin synthase; queuosine biosynthesis protein QueD 1459775..1460224 Nitrosomonas sp. AL212 10298040 YP_004294562.1 CDS NAL212_1519 NC_015222.1 1460246 1461028 D KEGG: neu:NE1516 hypothetical protein; TIGRFAM: Deoxyribonuclease, TatD Mg-dependent, prokaryote; PFAM: Deoxyribonuclease, TatD-related; TatD family hydrolase 1460246..1461028 Nitrosomonas sp. AL212 10298041 YP_004294563.1 CDS NAL212_1520 NC_015222.1 1461012 1461662 D PFAM: Ankyrin repeat; KEGG: nmu:Nmul_A1380 ankyrin; ankyrin 1461012..1461662 Nitrosomonas sp. AL212 10298042 YP_004294564.1 CDS NAL212_1521 NC_015222.1 1461700 1462440 D KEGG: nmu:Nmul_A1378 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-ACP reductase 1461700..1462440 Nitrosomonas sp. AL212 10298043 YP_004294565.1 CDS NAL212_1522 NC_015222.1 1462462 1463577 D TIGRFAM: Alanine dehydrogenase/pyridine nucleotide transhydrogenase; KEGG: pla:Plav_1557 alanine dehydrogenase; PFAM: Alanine dehydrogenase/PNT, C-terminal; Alanine dehydrogenase/PNT, N-terminal; alanine dehydrogenase 1462462..1463577 Nitrosomonas sp. AL212 10298044 YP_004294566.1 CDS NAL212_1523 NC_015222.1 1463743 1466118 D PFAM: Fatty acid cis-trans isomerase; KEGG: neu:NE1330 cis/trans isomerase; fatty acid cistrans isomerase 1463743..1466118 Nitrosomonas sp. AL212 10298045 YP_004294567.1 CDS NAL212_1524 NC_015222.1 1466187 1466474 D KEGG: blb:BBMN68_1051 tas3; hypothetical protein 1466187..1466474 Nitrosomonas sp. AL212 10298046 YP_004294568.1 CDS NAL212_1525 NC_015222.1 1466508 1468169 R KEGG: nmu:Nmul_A0508 hypothetical protein; hypothetical protein complement(1466508..1468169) Nitrosomonas sp. AL212 10298047 YP_004294569.1 CDS NAL212_1526 NC_015222.1 1468472 1468906 D KEGG: abn:AB57_2458 hypothetical protein; hypothetical protein 1468472..1468906 Nitrosomonas sp. AL212 10298048 YP_004294570.1 CDS NAL212_1527 NC_015222.1 1469414 1470151 D KEGG: neu:NE2376 hypothetical protein; hypothetical protein 1469414..1470151 Nitrosomonas sp. AL212 10298049 YP_004294571.1 CDS NAL212_1528 NC_015222.1 1470259 1470717 D KEGG: noc:Noc_1222 hypothetical protein; hypothetical protein 1470259..1470717 Nitrosomonas sp. AL212 10298050 YP_004294572.1 CDS NAL212_1529 NC_015222.1 1470756 1471256 D PFAM: Redoxin; KEGG: nhl:Nhal_2589 redoxin domain protein; redoxin domain-containing protein 1470756..1471256 Nitrosomonas sp. AL212 10298051 YP_004294573.1 CDS NAL212_1530 NC_015222.1 1471293 1471529 D manually curated; KEGG: nhl:Nhal_2590 arginine decarboxylase; arginine decarboxylase 1471293..1471529 Nitrosomonas sp. AL212 10298052 YP_004294574.1 CDS NAL212_1531 NC_015222.1 1471570 1474290 D KEGG: nhl:Nhal_2591 hypothetical protein; hypothetical protein 1471570..1474290 Nitrosomonas sp. AL212 10298053 YP_004294575.1 CDS NAL212_1532 NC_015222.1 1474336 1475241 D PFAM: Thiamine synthesis ApbE/UPF0280; KEGG: nhl:Nhal_2592 ApbE family lipoprotein; ApbE family lipoprotein 1474336..1475241 Nitrosomonas sp. AL212 10298054 YP_004294576.1 CDS NAL212_1533 NC_015222.1 1475328 1476566 D PFAM: Lipase, class 3; KEGG: rfr:Rfer_2719 hemolysin-type calcium-binding protein; lipase class 3 1475328..1476566 Nitrosomonas sp. AL212 10298055 YP_004294577.1 CDS NAL212_1534 NC_015222.1 1476734 1477549 D PFAM: UPF0103/Mediator of ErbB2-driven cell motility (Memo-related); KEGG: gca:Galf_1560 hypothetical protein; hypothetical protein 1476734..1477549 Nitrosomonas sp. AL212 10298056 YP_004294578.1 CDS NAL212_1535 NC_015222.1 1477552 1478142 D KEGG: slt:Slit_1845 AMMECR1 domain protein; TIGRFAM: AMMECR1; PFAM: AMMECR1; AMMECR1 domain-containing protein 1477552..1478142 Nitrosomonas sp. AL212 10298057 YP_004294579.1 CDS NAL212_1536 NC_015222.1 1478135 1479232 D PFAM: Radical SAM; KEGG: gca:Galf_1562 radical SAM domain-containing protein; Radical SAM domain-containing protein 1478135..1479232 Nitrosomonas sp. AL212 10298058 YP_004294580.1 CDS NAL212_1537 NC_015222.1 1479398 1479685 R PFAM: Protein of unknown function DUF2934; KEGG: tau:Tola_1999 hypothetical protein; hypothetical protein complement(1479398..1479685) Nitrosomonas sp. AL212 10298059 YP_004294581.1 CDS NAL212_1538 NC_015222.1 1480038 1480391 R KEGG: neu:NE1279 hypothetical protein; hypothetical protein complement(1480038..1480391) Nitrosomonas sp. AL212 10298060 YP_004294582.1 CDS NAL212_1539 NC_015222.1 1480632 1481081 R KEGG: net:Neut_0971 signal-transduction protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core; putative signal transduction protein with CBS domains complement(1480632..1481081) Nitrosomonas sp. AL212 10298061 YP_004294583.1 CDS NAL212_1540 NC_015222.1 1481804 1482253 D KEGG: ddi:DDB_G0283905 protein phosphatase 2A B55 regulatory subunit; hypothetical protein 1481804..1482253 Nitrosomonas sp. AL212 10298062 YP_004294584.1 CDS NAL212_1541 NC_015222.1 1482423 1483316 D KEGG: ppr:PBPRB1378 hypothetical protein; hypothetical protein 1482423..1483316 Nitrosomonas sp. AL212 10298063 YP_004294585.1 CDS NAL212_1542 NC_015222.1 1483731 1484048 D PFAM: Flagellar transcriptional activator; KEGG: net:Neut_0729 transcriptional activator FlhD; flagellar transcriptional activator 1483731..1484048 Nitrosomonas sp. AL212 10298064 YP_004294586.1 CDS NAL212_1543 NC_015222.1 1484077 1484613 D PFAM: Flagellar transcriptional activator FlhC; KEGG: net:Neut_0730 transcriptional activator FlhC; flagellar transcriptional activator FlhC 1484077..1484613 Nitrosomonas sp. AL212 10298065 YP_004294587.1 CDS NAL212_1544 NC_015222.1 1484648 1485841 R KEGG: nmu:Nmul_A1360 aminotransferase, class I and II; PFAM: Aminotransferase, class I/classII; aspartate transaminase complement(1484648..1485841) Nitrosomonas sp. AL212 10298066 YP_004294588.1 CDS NAL212_1545 NC_015222.1 1485921 1487951 D SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; TIGRFAM: Excinuclease ABC, B subunit; KEGG: nmu:Nmul_A1361 excinuclease ABC subunit B; HAMAP: Excinuclease ABC, B subunit; PFAM: Helicase, C-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; UvrB/UvrC protein; UvrABC system protein B 1485921..1487951 Nitrosomonas sp. AL212 10298067 YP_004294589.1 CDS NAL212_1546 NC_015222.1 1487957 1488304 R KEGG: neu:NE0784 hypothetical protein; hypothetical protein complement(1487957..1488304) Nitrosomonas sp. AL212 10298068 YP_004294590.1 CDS NAL212_1547 NC_015222.1 1488355 1489179 R PFAM: tRNA/rRNA methyltransferase, SpoU; KEGG: nmu:Nmul_A1870 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU complement(1488355..1489179) Nitrosomonas sp. AL212 10298069 YP_004294591.1 CDS NAL212_1548 NC_015222.1 1489226 1490530 R TIGRFAM: Histidinol dehydrogenase, prokaryotic-type; KEGG: nmu:Nmul_A0819 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase, prokaryotic-type; histidinol dehydrogenase complement(1489226..1490530) Nitrosomonas sp. AL212 10298070 YP_004294592.1 CDS NAL212_1549 NC_015222.1 1490557 1491201 R TIGRFAM: ATP phosphoribosyltransferase, catalytic domain; KEGG: nmu:Nmul_A0820 ATP phosphoribosyltransferase catalytic subunit; PFAM: ATP phosphoribosyltransferase, catalytic domain; ATP phosphoribosyltransferase complement(1490557..1491201) Nitrosomonas sp. AL212 10298071 YP_004294593.1 CDS NAL212_1550 NC_015222.1 1491214 1491855 R KEGG: neu:NE0870 manganese and iron superoxide dismutase; PFAM: Manganese/iron superoxide dismutase, C-terminal; Manganese/iron superoxide dismutase, N-terminal; Superoxide dismutase complement(1491214..1491855) Nitrosomonas sp. AL212 10298072 YP_004294594.1 CDS NAL212_1551 NC_015222.1 1491935 1492366 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: neu:NE0869 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR complement(1491935..1492366) Nitrosomonas sp. AL212 10298073 YP_004294595.1 CDS NAL212_1552 NC_015222.1 1492616 1493104 D PFAM: Phosphoribosylaminoimidazole carboxylase, core; manually curated; KEGG: neu:NE0868 phosphoribosylaminoimidazole carboxylase catalytic subunit protein; TIGRFAM: Phosphoribosylaminoimidazole carboxylase, core; phosphoribosylaminoimidazole carboxylase catalytic subunit 1492616..1493104 Nitrosomonas sp. AL212 10298074 YP_004294596.1 CDS NAL212_1553 NC_015222.1 1493104 1494237 D TIGRFAM: Phosphoribosylaminoimidazole carboxylase, ATPase subunit; KEGG: nmu:Nmul_A0611 phosphoribosylaminoimidazole carboxylase ATPase subunit; PFAM: ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type; phosphoribosylaminoimidazole carboxylase ATPase subunit 1493104..1494237 Nitrosomonas sp. AL212 10298075 YP_004294597.1 CDS NAL212_1554 NC_015222.1 1494249 1495139 D TIGRFAM: SAICAR synthetase; KEGG: neu:NE0866 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; phosphoribosylaminoimidazole-succinocarboxamide synthase 1494249..1495139 Nitrosomonas sp. AL212 10298076 YP_004294598.1 CDS NAL212_1555 NC_015222.1 1495305 1496306 R KEGG: nhl:Nhal_3686 alcohol dehydrogenase zinc-binding domain protein; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; NADPH:quinone reductase complement(1495305..1496306) Nitrosomonas sp. AL212 10298077 YP_004294599.1 CDS NAL212_1556 NC_015222.1 1496343 1496579 R PFAM: Protein of unknown function DUF465; KEGG: cps:CPS_0008 hypothetical protein; hypothetical protein complement(1496343..1496579) Nitrosomonas sp. AL212 10298078 YP_004294600.1 CDS NAL212_1557 NC_015222.1 1496916 1497530 D SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, haem export, CcmA; KEGG: nmu:Nmul_A1217 cytochrome c biogenesis protein CcmA; PFAM: ABC transporter-like; heme exporter protein CcmA 1496916..1497530 Nitrosomonas sp. AL212 10298079 YP_004294601.1 CDS NAL212_1558 NC_015222.1 1497538 1498191 D KEGG: nmu:Nmul_A1216 heme exporter protein CcmB; TIGRFAM: Cytochrome c-type biogenesis protein CcmB; PFAM: Cytochrome c-type biogenesis protein CcmB; heme exporter protein CcmB 1497538..1498191 Nitrosomonas sp. AL212 10298080 YP_004294602.1 CDS NAL212_1559 NC_015222.1 1498357 1499103 D KEGG: nmu:Nmul_A1212 heme exporter protein CcmC; TIGRFAM: Cytochrome c-type biogenesis protein CcmC; PFAM: Cytochrome c assembly protein; heme exporter protein CcmC 1498357..1499103 Nitrosomonas sp. AL212 10298081 YP_004294603.1 CDS NAL212_1560 NC_015222.1 1499100 1499297 D KEGG: nmu:Nmul_A1211 hypothetical protein; manually curated; TIGRFAM: Haem exporter protein D (CcmD); heme exporter protein CcmD 1499100..1499297 Nitrosomonas sp. AL212 10298082 YP_004294604.1 CDS NAL212_1561 NC_015222.1 1499281 1499730 D PFAM: CcmE/CycJ protein; KEGG: neu:NE0767 cytochrome c-type biogenesis protein CcmE; CcmE/CycJ protein 1499281..1499730 Nitrosomonas sp. AL212 10298083 YP_004294605.1 CDS NAL212_1562 NC_015222.1 1499815 1501869 D KEGG: neu:NE0768 cytochrome c-type biogenesis protein (CcmF); TIGRFAM: Cytochrome c-type biogenesis protein CcmF; PFAM: Cytochrome c assembly protein; cytochrome c-type biogenesis protein CcmF 1499815..1501869 Nitrosomonas sp. AL212 10298084 YP_004294606.1 CDS NAL212_1563 NC_015222.1 1501866 1502396 D KEGG: net:Neut_1637 periplasmic protein thiol--disulphide oxidoreductase DsbE; TIGRFAM: Periplasmic protein thiol:disulphide oxidoreductase DsbE; PFAM: Redoxin; protein thiol/disulfide oxidoreductase DsbE 1501866..1502396 Nitrosomonas sp. AL212 10298085 YP_004294607.1 CDS NAL212_1564 NC_015222.1 1502430 1502930 D PFAM: Cytochrome C biogenesis protein CcmH; KEGG: nmu:Nmul_A1207 cytochrome c biogenesis protein; cytochrome C biogenesis protein 1502430..1502930 Nitrosomonas sp. AL212 10298086 YP_004294608.1 CDS NAL212_1565 NC_015222.1 1502927 1504258 D TIGRFAM: Cytochrome c-type biogenesis protein CcmI; KEGG: neu:NE0771 TPR repeat-containing protein; cytochrome c-type biogenesis protein CcmI 1502927..1504258 Nitrosomonas sp. AL212 10298087 YP_004294609.1 CDS NAL212_1566 NC_015222.1 1504262 1504732 D PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; KEGG: nmu:Nmul_A1945 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen 1504262..1504732 Nitrosomonas sp. AL212 10298088 YP_004294610.1 CDS NAL212_1567 NC_015222.1 1505011 1505616 R TIGRFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR; KEGG: net:Neut_1918 cob(I)alamin adenosyltransferase; PFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR; cob(I)alamin adenosyltransferase complement(1505011..1505616) Nitrosomonas sp. AL212 10298089 YP_004294611.1 CDS NAL212_1568 NC_015222.1 1505621 1506199 R KEGG: neu:NE0635 hypothetical protein; hypothetical protein complement(1505621..1506199) Nitrosomonas sp. AL212 10298090 YP_004294612.1 CDS NAL212_1569 NC_015222.1 1506214 1508067 R KEGG: net:Neut_1916 TonB-dependent vitamin B12 receptor; TIGRFAM: TonB-dependent vitamin B12 receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; TonB-dependent vitamin B12 receptor complement(1506214..1508067) Nitrosomonas sp. AL212 10298091 YP_004294613.1 CDS NAL212_1570 NC_015222.1 1508617 1510332 R KEGG: nhl:Nhal_0193 CHRD domain containing protein; hypothetical protein complement(1508617..1510332) Nitrosomonas sp. AL212 10298092 YP_004294614.1 CDS NAL212_1571 NC_015222.1 1510676 1512100 D KEGG: nhl:Nhal_2423 hypothetical protein; hypothetical protein 1510676..1512100 Nitrosomonas sp. AL212 10298093 YP_004294615.1 CDS NAL212_1572 NC_015222.1 1512103 1513116 D PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: tgr:Tgr7_0559 succinylglutamate desuccinylase/aspartoacylase; succinylglutamate desuccinylase/aspartoacylase 1512103..1513116 Nitrosomonas sp. AL212 10298094 YP_004294616.1 CDS NAL212_1573 NC_015222.1 1513188 1514303 R PFAM: Transglutaminase-like; KEGG: net:Neut_1183 twin-arginine translocation pathway signal; transglutaminase domain-containing protein complement(1513188..1514303) Nitrosomonas sp. AL212 10298095 YP_004294617.1 CDS NAL212_1574 NC_015222.1 1514398 1515093 D KEGG: net:Neut_1182 carboxylesterase; PFAM: Phospholipase/carboxylesterase; carboxylesterase 1514398..1515093 Nitrosomonas sp. AL212 10298096 YP_004294618.1 CDS NAL212_1575 NC_015222.1 1515367 1516530 D TIGRFAM: S-adenosylmethionine synthetase; KEGG: nmu:Nmul_A2541 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase, C-terminal; S-adenosylmethionine synthetase, central domain; S-adenosylmethionine synthetase, N-terminal; S-adenosylmethionine synthetase 1515367..1516530 Nitrosomonas sp. AL212 10298097 YP_004294619.1 CDS NAL212_1576 NC_015222.1 1516680 1518113 D TIGRFAM: Adenosylhomocysteinase; KEGG: neu:NE0660 S-adenosyl-L-homocysteine hydrolase; PFAM: Adenosylhomocysteinase; S-adenosyl-L-homocysteine hydrolase, NAD binding; adenosylhomocysteinase 1516680..1518113 Nitrosomonas sp. AL212 10298098 YP_004294620.1 CDS NAL212_1577 NC_015222.1 1518257 1519117 D TIGRFAM: 5,10-methylenetetrahydrofolate reductase; KEGG: nmu:Nmul_A2539 5,10-methylenetetrahydrofolate reductase; PFAM: Methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 1518257..1519117 Nitrosomonas sp. AL212 10298099 YP_004294621.1 CDS NAL212_1578 NC_015222.1 1519285 1519974 D KEGG: nmu:Nmul_A0356 hypothetical protein; hypothetical protein 1519285..1519974 Nitrosomonas sp. AL212 10298100 YP_004294622.1 CDS NAL212_1579 NC_015222.1 1520066 1520926 D KEGG: nmu:Nmul_A0357 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; methylenetetrahydrofolate dehydrogenase 1520066..1520926 Nitrosomonas sp. AL212 10298101 YP_004294623.1 CDS NAL212_1580 NC_015222.1 1520963 1523623 D TIGRFAM: 2-oxo-acid dehydrogenase E1 component homodimeric type; KEGG: neu:NE0361 pyruvate dehydrogenase subunit E1; PFAM: Transketolase, N-terminal; 2-oxo-acid dehydrogenase E1 subunit, homodimeric type 1520963..1523623 Nitrosomonas sp. AL212 10298102 YP_004294624.1 CDS NAL212_1581 NC_015222.1 1523707 1525017 D KEGG: neu:NE0360 branched-chain alpha-keto acid dehydrogenase subunit E2; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding; dihydrolipoyllysine-residue acetyltransferase 1523707..1525017 Nitrosomonas sp. AL212 10298103 YP_004294625.1 CDS NAL212_1582 NC_015222.1 1525047 1525724 D PFAM: Cytidylyltransferase; Nicotinamide mononucleotide adenylyltransferase, C-terminal; TIGRFAM: Probable nicotinate-nucleotide adenylyltransferase; Cytidyltransferase-related; HAMAP: Probable nicotinate-nucleotide adenylyltransferase; KEGG: neu:NE0359 cytidylyltransferase; nicotinate-nucleotide adenylyltransferase 1525047..1525724 Nitrosomonas sp. AL212 10298104 YP_004294626.1 CDS NAL212_1583 NC_015222.1 1525721 1526047 D KEGG: eba:ebA3971 hypothetical protein; TIGRFAM: Ribosome-associated, Iojap-like; PFAM: Ribosome-associated, Iojap-like; iojap family protein 1525721..1526047 Nitrosomonas sp. AL212 10298105 YP_004294627.1 CDS NAL212_1584 NC_015222.1 1526081 1526551 D PFAM: SPOUT methyltransferase, predicted; KEGG: nmu:Nmul_A0362 hypothetical protein; SPOUT methyltransferase 1526081..1526551 Nitrosomonas sp. AL212 10298106 YP_004294628.1 CDS NAL212_1585 NC_015222.1 1526659 1527276 D KEGG: net:Neut_1613 maf protein; TIGRFAM: Maf-like protein; PFAM: Maf-like protein; maf protein 1526659..1527276 Nitrosomonas sp. AL212 10298107 YP_004294629.1 CDS NAL212_1586 NC_015222.1 1527377 1528831 D TIGRFAM: Ribonuclease E/G; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; Ribosomal protein S1, RNA-binding domain; KEGG: net:Neut_1614 ribonuclease, Rne/Rng family protein; SMART: RNA-binding domain, S1; ribonuclease, Rne/Rng family 1527377..1528831 Nitrosomonas sp. AL212 10298108 YP_004294630.1 CDS NAL212_1587 NC_015222.1 1529022 1530239 D TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; KEGG: nmu:Nmul_A0398 beta-ketoacyl synthase; PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal; 3-oxoacyl-ACP synthase II 1529022..1530239 Nitrosomonas sp. AL212 10298109 YP_004294631.1 CDS NAL212_1588 NC_015222.1 1530255 1530509 D PFAM: Phosphopantetheine-binding; KEGG: nmu:Nmul_A0397 phosphopantetheine-binding; phosphopantetheine-binding protein 1530255..1530509 Nitrosomonas sp. AL212 10298110 YP_004294632.1 CDS NAL212_1589 NC_015222.1 1531039 1531449 D PFAM: Transcription elongation factor, GreA/GreB, C-terminal; KEGG: pmy:Pmen_0271 nucleoside diphosphate kinase regulator; GreA/GreB family elongation factor 1531039..1531449 Nitrosomonas sp. AL212 10298111 YP_004294633.1 CDS NAL212_1590 NC_015222.1 1531465 1532652 R PFAM: Haemolysin-type calcium-binding repeat; KEGG: gsu:GSU3176 LysM domain-containing protein; hemolysin-type calcium-binding protein complement(1531465..1532652) Nitrosomonas sp. AL212 10298112 YP_004294634.1 CDS NAL212_1591 NC_015222.1 1532700 1533221 R TIGRFAM: Methionine sulphoxide reductase B; KEGG: app:CAP2UW1_3719 methionine-R-sulfoxide reductase; PFAM: Methionine sulphoxide reductase B; methionine-R-sulfoxide reductase complement(1532700..1533221) Nitrosomonas sp. AL212 10298113 YP_004294635.1 CDS NAL212_1593 NC_015222.1 1534282 1534842 D KEGG: nmu:Nmul_A0945 hypothetical protein; hypothetical protein 1534282..1534842 Nitrosomonas sp. AL212 10298115 YP_004294636.1 CDS NAL212_1594 NC_015222.1 1534982 1535185 D KEGG: mfa:Mfla_1053 hypothetical protein; hypothetical protein 1534982..1535185 Nitrosomonas sp. AL212 10298116 YP_004294637.1 CDS NAL212_1596 NC_015222.1 1536623 1537138 D KEGG: ppm:PPSC2_c2369 rtx toxins and like ca2+-binding protein; hypothetical protein 1536623..1537138 Nitrosomonas sp. AL212 10298118 YP_004294638.1 CDS NAL212_1597 NC_015222.1 1537714 1539354 D TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; KEGG: har:HEAR3085 hypothetical protein; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; diguanylate cyclase/phosphodiesterase 1537714..1539354 Nitrosomonas sp. AL212 10298119 YP_004294639.1 CDS NAL212_1598 NC_015222.1 1539573 1540049 D KEGG: neu:NE0832 hypothetical protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily; phenylacetic acid degradation-like protein 1539573..1540049 Nitrosomonas sp. AL212 10298120 YP_004294640.1 CDS NAL212_1599 NC_015222.1 1540132 1540593 R KEGG: nmu:Nmul_A2623 hypothetical protein; hypothetical protein complement(1540132..1540593) Nitrosomonas sp. AL212 10298121 YP_004294641.1 CDS NAL212_1600 NC_015222.1 1541001 1542371 D PFAM: Protein of unknown function DUF3422; KEGG: neu:NE1887 hypothetical protein; hypothetical protein 1541001..1542371 Nitrosomonas sp. AL212 10298122 YP_004294642.1 CDS NAL212_1602 NC_015222.1 1543434 1544813 R TIGRFAM: Iron-sulphur-dependent L-serine dehydratase single chain form; KEGG: net:Neut_1760 L-serine dehydratase 1; PFAM: Serine dehydratase-like, alpha subunit; Serine dehydratase beta chain; L-serine dehydratase 1 complement(1543434..1544813) Nitrosomonas sp. AL212 10298124 YP_004294643.1 CDS NAL212_1603 NC_015222.1 1545125 1545364 D PFAM: BFD-like [2Fe-2S]-binding domain; KEGG: net:Neut_1196 BFD/(2Fe-2S)-binding domain-containing protein; BFD (2Fe-2S)-binding domain-containing protein 1545125..1545364 Nitrosomonas sp. AL212 10298125 YP_004294644.1 CDS NAL212_1604 NC_015222.1 1545489 1547882 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; KEGG: nmu:Nmul_A1260 TonB-dependent siderophore receptor; SMART: Secretin/TonB, short N-terminal; TonB-dependent siderophore receptor 1545489..1547882 Nitrosomonas sp. AL212 10298126 YP_004294645.1 CDS NAL212_1605 NC_015222.1 1547998 1550253 D KEGG: gwc:GWCH70_2618 hypothetical protein; hypothetical protein 1547998..1550253 Nitrosomonas sp. AL212 10298127 YP_004294646.1 CDS NAL212_1606 NC_015222.1 1550320 1551270 R PFAM: HhH-GPD domain; KEGG: eba:ebA7191 DNA-3-methyladenine glycosidase II; HhH-GPD family protein complement(1550320..1551270) Nitrosomonas sp. AL212 10298128 YP_004294647.1 CDS NAL212_1607 NC_015222.1 1551267 1551800 R KEGG: pfl:PFL_3409 ADA regulatory protein; TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; methylated-DNA--protein-cysteine methyltransferase complement(1551267..1551800) Nitrosomonas sp. AL212 10298129 YP_004294648.1 CDS NAL212_1608 NC_015222.1 1552002 1552895 R PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: rma:Rmag_0986 LysR family transcriptional regulator; LysR family transcriptional regulator complement(1552002..1552895) Nitrosomonas sp. AL212 10298130 YP_004294649.1 CDS NAL212_1609 NC_015222.1 1552979 1555297 D TIGRFAM: Cobalamin-independent methionine synthase; KEGG: hch:HCH_01174 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; PFAM: Methionine synthase, vitamin-B12 independent; Cobalamin (vitamin B12)-independent methionine synthase MetE, N-terminal; 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase 1552979..1555297 Nitrosomonas sp. AL212 10298131 YP_004294650.1 CDS NAL212_1610 NC_015222.1 1555368 1556111 D PFAM: TENA/THI-4 protein/Coenzyme PQQ biosynthesis protein C; KEGG: net:Neut_1553 TenA/THI-4 domain-containing protein; TENA/THI-4 domain-containing protein 1555368..1556111 Nitrosomonas sp. AL212 10298132 YP_004294651.1 CDS NAL212_1611 NC_015222.1 1556469 1557704 D KEGG: nmu:Nmul_A1552 aminotransferase AlaT; PFAM: Aminotransferase, class I/classII; aspartate transaminase 1556469..1557704 Nitrosomonas sp. AL212 10298133 YP_004294652.1 CDS NAL212_1612 NC_015222.1 1557785 1559098 D KEGG: nmu:Nmul_A1551 homoserine dehydrogenase; PFAM: Homoserine dehydrogenase, catalytic; Aspartate/homoserine dehydrogenase, NAD-binding; Amino acid-binding ACT; Homoserine dehydrogenase 1557785..1559098 Nitrosomonas sp. AL212 10298134 YP_004294653.1 CDS NAL212_1613 NC_015222.1 1559186 1560604 D TIGRFAM: Threonine synthase; KEGG: neu:NE2370 threonine synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; threonine synthase 1559186..1560604 Nitrosomonas sp. AL212 10298135 YP_004294654.1 CDS NAL212_1614 NC_015222.1 1560964 1562052 D PFAM: aminopeptidase; KEGG: app:CAP2UW1_1931 aminopeptidase; aminopeptidase 1560964..1562052 Nitrosomonas sp. AL212 10298136 YP_004294655.1 CDS NAL212_1615 NC_015222.1 1562136 1562966 R TIGRFAM: Pseudouridine synthase, RsuA/RluB/E/F; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: nmu:Nmul_A1855 pseudouridine synthase, Rsu; SMART: RNA-binding S4; pseudouridine synthase Rsu complement(1562136..1562966) Nitrosomonas sp. AL212 10298137 YP_004294656.1 CDS NAL212_1616 NC_015222.1 1563158 1568572 R PFAM: Haemolysin-type calcium-binding repeat; KEGG: mei:Msip34_1985 putative rhizobiocin/RTX toxin and hemolysin-type calcium binding protein; hemolysin-type calcium-binding protein complement(1563158..1568572) Nitrosomonas sp. AL212 10298138 YP_004294657.1 CDS NAL212_1617 NC_015222.1 1568708 1569034 R TIGRFAM: Uncharacterised protein family UPF0133; HAMAP: Uncharacterised protein family UPF0133; KEGG: nmu:Nmul_A1857 hypothetical protein; PFAM: Uncharacterised protein family UPF0133; hypothetical protein complement(1568708..1569034) Nitrosomonas sp. AL212 10298139 YP_004294658.1 CDS NAL212_1618 NC_015222.1 1569021 1570634 R TIGRFAM: DNA polymerase III, subunit gamma/ tau; PFAM: ATPase, AAA-type, core; KEGG: nmu:Nmul_A1858 DNA-directed DNA polymerase; SMART: ATPase, AAA+ type, core; DNA polymerase III subunits gamma and tau complement(1569021..1570634) Nitrosomonas sp. AL212 10298140 YP_004294659.1 CDS NAL212_1619 NC_015222.1 1571061 1572530 D TIGRFAM: RecB family nuclease, TM0106, putative; KEGG: cyc:PCC7424_0336 hypothetical protein; RecB family nuclease 1571061..1572530 Nitrosomonas sp. AL212 10298142 YP_004294660.1 CDS NAL212_1620 NC_015222.1 1572556 1574010 R TIGRFAM: Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; KEGG: tbd:Tbd_1239 mannose-1-phosphate guanylyltransferase (GDP); PFAM: Nucleotidyl transferase; Mannose-6-phosphate isomerase, type II, C-terminal; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase complement(1572556..1574010) Nitrosomonas sp. AL212 10298143 YP_004294661.1 CDS NAL212_1621 NC_015222.1 1574401 1575459 D TIGRFAM: DHAP synthase, class 1; KEGG: neu:NE0831 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; phospho-2-dehydro-3-deoxyheptonate aldolase 1574401..1575459 Nitrosomonas sp. AL212 10298144 YP_004294662.1 CDS NAL212_1622 NC_015222.1 1575720 1576337 D KEGG: nmu:Nmul_A0262 hypothetical protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial; PEP motif putative anchor domain-containing protein 1575720..1576337 Nitrosomonas sp. AL212 10298145 YP_004294663.1 CDS NAL212_1623 NC_015222.1 1576546 1577421 D KEGG: pgu:PGUG_03259 hypothetical protein; hypothetical protein 1576546..1577421 Nitrosomonas sp. AL212 10298146 YP_004294664.1 CDS NAL212_1624 NC_015222.1 1577798 1578502 D PFAM: Major intrinsic protein; KEGG: bte:BTH_I0598 glycerol uptake facilitator protein; major intrinsic protein 1577798..1578502 Nitrosomonas sp. AL212 10298147 YP_004294665.1 CDS NAL212_1625 NC_015222.1 1578595 1578828 R KEGG: osa:9268454 Os01g0516800; hypothetical protein complement(1578595..1578828) Nitrosomonas sp. AL212 10298148 YP_004294666.1 CDS NAL212_1626 NC_015222.1 1579095 1579937 D PFAM: LysR, substrate-binding; KEGG: noc:Noc_0584 extracellular solute-binding protein; LysR family transcriptional regulator 1579095..1579937 Nitrosomonas sp. AL212 10298149 YP_004294667.1 CDS NAL212_1627 NC_015222.1 1579891 1580769 D KEGG: nhl:Nhal_2980 phosphate ABC transporter, inner membrane subunit PstC; TIGRFAM: Phosphate ABC transporter, permease protein PstC; PFAM: Binding-protein-dependent transport systems inner membrane component; phosphate ABC transporter permease 1579891..1580769 Nitrosomonas sp. AL212 10298150 YP_004294668.1 CDS NAL212_1628 NC_015222.1 1580762 1581628 D KEGG: nhl:Nhal_2979 phosphate ABC transporter, inner membrane subunit PstA; TIGRFAM: Phosphate transport system permease protein 2; PFAM: Binding-protein-dependent transport systems inner membrane component; phosphate ABC transporter permease 1580762..1581628 Nitrosomonas sp. AL212 10298151 YP_004294669.1 CDS NAL212_1629 NC_015222.1 1581625 1582473 D PFAM: ABC transporter-like; KEGG: noc:Noc_0581 ABC transporter, ATPase subunit; SMART: ATPase, AAA+ type, core; phosphate-transporting ATPase 1581625..1582473 Nitrosomonas sp. AL212 10298152 YP_004294670.1 CDS NAL212_1630 NC_015222.1 1582518 1584653 D KEGG: lch:Lcho_1709 SNARE associated Golgi protein; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SNARE associated Golgi protein; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; dihydrolipoyl dehydrogenase 1582518..1584653 Nitrosomonas sp. AL212 10298153 YP_004294671.1 CDS NAL212_1634 NC_015222.1 1586213 1586386 R KEGG: eel:EUBELI_00813 hypothetical protein; hypothetical protein complement(1586213..1586386) Nitrosomonas sp. AL212 10298157 YP_004294672.1 CDS NAL212_1635 NC_015222.1 1586520 1586708 R hypothetical protein complement(1586520..1586708) Nitrosomonas sp. AL212 10298158 YP_004294673.1 CDS NAL212_1636 NC_015222.1 1586735 1586923 R KEGG: spb:M28_Spy1325 putative cell surface protein; putative cell surface protein complement(1586735..1586923) Nitrosomonas sp. AL212 10298159 YP_004294674.1 CDS NAL212_1637 NC_015222.1 1587113 1587802 R manually curated; KEGG: nmu:Nmul_A1413 hypothetical protein; hypothetical protein complement(1587113..1587802) Nitrosomonas sp. AL212 10298160 YP_004294675.1 CDS NAL212_1639 NC_015222.1 1588982 1589302 D PFAM: Transposase IS3/IS911family; KEGG: alv:Alvin_1732 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 1588982..1589302 Nitrosomonas sp. AL212 10298162 YP_004294676.1 CDS NAL212_1640 NC_015222.1 1589302 1590201 D PFAM: Integrase, catalytic core; KEGG: pde:Pden_3846 integrase catalytic subunit; integrase catalytic region 1589302..1590201 Nitrosomonas sp. AL212 10298163 YP_004294677.1 CDS NAL212_1641 NC_015222.1 1590385 1591884 R PFAM: Integrase, catalytic core; KEGG: mms:mma_2809 transposase IstA; integrase catalytic region complement(1590385..1591884) Nitrosomonas sp. AL212 10298164 YP_004294678.1 CDS NAL212_1642 NC_015222.1 1592167 1592433 R KEGG: edi:EDI_123220 hypothetical protein; hypothetical protein complement(1592167..1592433) Nitrosomonas sp. AL212 10298165 YP_004294679.1 CDS NAL212_1643 NC_015222.1 1592442 1592987 R KEGG: sbl:Sbal_0637 hypothetical protein; hypothetical protein complement(1592442..1592987) Nitrosomonas sp. AL212 10298166 YP_004294680.1 CDS NAL212_1644 NC_015222.1 1593286 1593906 D KEGG: mhu:Mhun_2063 hypothetical protein; hypothetical protein 1593286..1593906 Nitrosomonas sp. AL212 10298167 YP_004294681.1 CDS NAL212_1645 NC_015222.1 1593923 1594897 R PFAM: Zonular occludens toxin; KEGG: neu:NE0893 hypothetical protein; Zonular occludens toxin complement(1593923..1594897) Nitrosomonas sp. AL212 10298168 YP_004294682.1 CDS NAL212_1646 NC_015222.1 1594894 1595187 R PFAM: Protein of unknown function DUF2523; KEGG: neu:NE0892 putative phage gene; hypothetical protein complement(1594894..1595187) Nitrosomonas sp. AL212 10298169 YP_004294683.1 CDS NAL212_1647 NC_015222.1 1595187 1596506 R KEGG: neu:NE0891 hypothetical protein; hypothetical protein complement(1595187..1596506) Nitrosomonas sp. AL212 10298170 YP_004294684.1 CDS NAL212_1648 NC_015222.1 1596559 1596873 R KEGG: aav:Aave_2001 YccS/YhfK family integral membrane protein; hypothetical protein complement(1596559..1596873) Nitrosomonas sp. AL212 10298171 YP_004294685.1 CDS NAL212_1649 NC_015222.1 1596927 1597268 R PFAM: Coat protein B, bacteriophage; KEGG: neu:NE0890 hypothetical protein; Coat protein B complement(1596927..1597268) Nitrosomonas sp. AL212 10298172 YP_004294686.1 CDS NAL212_1650 NC_015222.1 1597341 1598360 R KEGG: neu:NE0888 hypothetical protein; TIGRFAM: Phage/plasmid replication protein, gene II/X; PFAM: Phage/plasmid replication protein, gene II/X, C-terminal; phage/plasmid replication protein, II/X family complement(1597341..1598360) Nitrosomonas sp. AL212 10298173 YP_004294687.1 CDS NAL212_1651 NC_015222.1 1598439 1598753 R KEGG: asa:ASA_2021 hypothetical protein; hypothetical protein complement(1598439..1598753) Nitrosomonas sp. AL212 10298174 YP_004294688.1 CDS NAL212_1652 NC_015222.1 1599103 1599468 D KEGG: neu:NE0886 hypothetical protein; hypothetical protein 1599103..1599468 Nitrosomonas sp. AL212 10298175 YP_004294689.1 CDS NAL212_1653 NC_015222.1 1599684 1600112 D KEGG: neu:NE0894 hypothetical protein; hypothetical protein 1599684..1600112 Nitrosomonas sp. AL212 10298176 YP_004294690.1 CDS NAL212_1654 NC_015222.1 1600146 1602068 R KEGG: sfu:Sfum_1900 hypothetical protein; hypothetical protein complement(1600146..1602068) Nitrosomonas sp. AL212 10298177 YP_004294691.1 CDS NAL212_1655 NC_015222.1 1602273 1602539 R KEGG: kse:Ksed_06350 hypothetical protein; hypothetical protein complement(1602273..1602539) Nitrosomonas sp. AL212 10298178 YP_004294692.1 CDS NAL212_1656 NC_015222.1 1602660 1603625 R PFAM: Zonular occludens toxin; KEGG: neu:NE0893 hypothetical protein; Zonular occludens toxin complement(1602660..1603625) Nitrosomonas sp. AL212 10298179 YP_004294693.1 CDS NAL212_1657 NC_015222.1 1603622 1603915 R PFAM: Protein of unknown function DUF2523; KEGG: neu:NE0892 putative phage gene; hypothetical protein complement(1603622..1603915) Nitrosomonas sp. AL212 10298180 YP_004294694.1 CDS NAL212_1658 NC_015222.1 1603915 1605234 R KEGG: neu:NE0891 hypothetical protein; hypothetical protein complement(1603915..1605234) Nitrosomonas sp. AL212 10298181 YP_004294695.1 CDS NAL212_1659 NC_015222.1 1605287 1605598 R KEGG: bja:blr5446 hypothetical protein; hypothetical protein complement(1605287..1605598) Nitrosomonas sp. AL212 10298182 YP_004294696.1 CDS NAL212_1660 NC_015222.1 1605649 1605885 R PFAM: Coat protein B, bacteriophage; KEGG: neu:NE0890 hypothetical protein; Coat protein B complement(1605649..1605885) Nitrosomonas sp. AL212 10298183 YP_004294697.1 CDS NAL212_1661 NC_015222.1 1605962 1606258 R KEGG: neu:NE0889 hypothetical protein; hypothetical protein complement(1605962..1606258) Nitrosomonas sp. AL212 10298184 YP_004294698.1 CDS NAL212_1662 NC_015222.1 1606334 1607344 R PFAM: Phage/plasmid replication protein, gene II/X, C-terminal; Phage/plasmid replication protein, gene II/X, N-terminal; KEGG: neu:NE0888 hypothetical protein; phage/plasmid replication protein, II/X, C-terminal protein complement(1606334..1607344) Nitrosomonas sp. AL212 10298185 YP_004294699.1 CDS NAL212_1663 NC_015222.1 1607358 1607627 R KEGG: tet:TTHERM_00370830 Guanylate-binding protein, N-terminal domain containing protein; hypothetical protein complement(1607358..1607627) Nitrosomonas sp. AL212 10298186 YP_004294700.1 CDS NAL212_1664 NC_015222.1 1607757 1608116 D KEGG: neu:NE0886 hypothetical protein; hypothetical protein 1607757..1608116 Nitrosomonas sp. AL212 10298187 YP_004294701.1 CDS NAL212_1665 NC_015222.1 1608367 1608795 D KEGG: neu:NE0894 hypothetical protein; hypothetical protein 1608367..1608795 Nitrosomonas sp. AL212 10298188 YP_004294702.1 CDS NAL212_1666 NC_015222.1 1609077 1611380 R KEGG: mms:mma_2809 transposase IstA; PFAM: IstB-like ATP-binding protein; Integrase, catalytic core; SMART: ATPase, AAA+ type, core; IstB domain-containing protein ATP-binding protein complement(1609077..1611380) Nitrosomonas sp. AL212 10298189 YP_004294703.1 CDS NAL212_1667 NC_015222.1 1611627 1612124 R PFAM: NLP/P60; KEGG: neu:NE2364 NLP/P60; NLP/P60 protein complement(1611627..1612124) Nitrosomonas sp. AL212 10298190 YP_004294704.1 CDS NAL212_1668 NC_015222.1 1612189 1613268 R PFAM: Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase; Signal transduction response regulator, receiver domain; KEGG: net:Neut_1173 chemotaxis-specific methylesterase; SMART: Signal transduction response regulator, receiver domain; response regulator receiver modulated CheB methylesterase complement(1612189..1613268) Nitrosomonas sp. AL212 10298191 YP_004294705.1 CDS NAL212_1669 NC_015222.1 1613305 1613916 R KEGG: tbd:Tbd_1616 chemoreceptor glutamine deamidase CheD; PFAM: Chemoreceptor glutamine deamidase CheD; protein CheD complement(1613305..1613916) Nitrosomonas sp. AL212 10298192 YP_004294706.1 CDS NAL212_1670 NC_015222.1 1613924 1614787 R PFAM: MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal; MCP methyltransferase, CheR-type, all-alpha domain, N-terminal; KEGG: neu:NE1861 CheR-type MCP methyl-transferase:generic methyl-transferase; SMART: MCP methyltransferase, CheR-type; CheR-type MCP methyltransferase complement(1613924..1614787) Nitrosomonas sp. AL212 10298193 YP_004294707.1 CDS NAL212_1671 NC_015222.1 1615006 1617192 R KEGG: neu:NE1866 chemotaxis sensor histidine kinase transcription regulator protein; PFAM: CheW-like protein; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; Signal transduction histidine kinase, subgroup, homodimeric; SMART: CheW-like protein; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; ATPase-like, ATP-binding domain; CheA signal transduction histidine kinase complement(1615006..1617192) Nitrosomonas sp. AL212 10298194 YP_004294708.1 CDS NAL212_1672 NC_015222.1 1617326 1617691 R KEGG: dar:Daro_0725 response regulator receiver; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; response regulator receiver protein complement(1617326..1617691) Nitrosomonas sp. AL212 10298195 YP_004294709.1 CDS NAL212_1673 NC_015222.1 1617753 1618415 R KEGG: mfa:Mfla_1938 hypothetical protein; hypothetical protein complement(1617753..1618415) Nitrosomonas sp. AL212 10298196 YP_004294710.1 CDS NAL212_1674 NC_015222.1 1618370 1618519 R hypothetical protein complement(1618370..1618519) Nitrosomonas sp. AL212 10298197 YP_004294711.1 CDS NAL212_1675 NC_015222.1 1618718 1619956 R KEGG: net:Neut_2126 diguanylate phosphodiesterase; PFAM: Diguanylate phosphodiesterase, EAL domain; Metal-dependent hydrolase HDOD; SMART: Diguanylate phosphodiesterase, EAL domain; diguanylate phosphodiesterase metal dependent hydrolase domain complement(1618718..1619956) Nitrosomonas sp. AL212 10298198 YP_004294712.1 CDS NAL212_1676 NC_015222.1 1620105 1620905 R TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: net:Neut_2127 diguanylate cyclase; SMART: Diguanylate cyclase, predicted; diguanylate cyclase complement(1620105..1620905) Nitrosomonas sp. AL212 10298199 YP_004294713.1 CDS NAL212_1677 NC_015222.1 1621235 1621888 R KEGG: nmr:Nmar_1252 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen complement(1621235..1621888) Nitrosomonas sp. AL212 10298200 YP_004294714.1 CDS NAL212_1678 NC_015222.1 1621992 1622447 D PFAM: Protein of unknown function DUF55; KEGG: nmu:Nmul_A0614 hypothetical protein; hypothetical protein 1621992..1622447 Nitrosomonas sp. AL212 10298201 YP_004294715.1 CDS NAL212_1679 NC_015222.1 1622479 1623276 D PFAM: Protein of unknown function DUF81; KEGG: nmu:Nmul_A0613 hypothetical protein; hypothetical protein 1622479..1623276 Nitrosomonas sp. AL212 10298202 YP_004294716.1 CDS NAL212_1680 NC_015222.1 1623461 1623994 R KEGG: eli:ELI_14255 inorganic pyrophosphatase; PFAM: Inorganic pyrophosphatase; inorganic diphosphatase complement(1623461..1623994) Nitrosomonas sp. AL212 10298203 YP_004294717.1 CDS NAL212_1681 NC_015222.1 1624355 1625188 R PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: tbd:Tbd_0244 outer membrane protein; OmpA/MotB domain-containing protein complement(1624355..1625188) Nitrosomonas sp. AL212 10298204 YP_004294718.1 CDS NAL212_1682 NC_015222.1 1625207 1625614 R KEGG: tbd:Tbd_0243 hypothetical protein; hypothetical protein complement(1625207..1625614) Nitrosomonas sp. AL212 10298205 YP_004294719.1 CDS NAL212_1684 NC_015222.1 1626304 1626702 R KEGG: tgu:100229040 similar to lysophosphatidic acid receptor 2; lysophosphatidic acid receptor 2-like protein complement(1626304..1626702) Nitrosomonas sp. AL212 10298207 YP_004294720.1 CDS NAL212_1685 NC_015222.1 1627056 1627655 D KEGG: nmu:Nmul_A0989 hypothetical protein; hypothetical protein 1627056..1627655 Nitrosomonas sp. AL212 10298208 YP_004294721.1 CDS NAL212_1686 NC_015222.1 1627792 1629306 D KEGG: nmu:Nmul_A0988 putative ubiquinone biosynthesis protein UbiB; TIGRFAM: Probable ubiquinone biosynthesis protein UbiB; PFAM: ABC-1; 2-polyprenylphenol 6-hydroxylase 1627792..1629306 Nitrosomonas sp. AL212 10298209 YP_004294722.1 CDS NAL212_1687 NC_015222.1 1629466 1629774 D KEGG: nmu:Nmul_A0978 putative ferredoxin 2fe-2s protein; putative ferredoxin 2fe-2s protein 1629466..1629774 Nitrosomonas sp. AL212 10298210 YP_004294723.1 CDS NAL212_1688 NC_015222.1 1629838 1630023 D KEGG: dgr:Dgri_GH10779 GH10779 gene product from transcript GH10779-RA; hypothetical protein 1629838..1630023 Nitrosomonas sp. AL212 10298211 YP_004294724.1 CDS NAL212_1689 NC_015222.1 1630006 1631265 R TIGRFAM: Transcription termination factor Rho; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; Rho termination factor, N-terminal; Rho termination factor, RNA-binding; KEGG: neu:NE1035 transcription termination factor Rho; SMART: Cold shock protein; ATPase, AAA+ type, core; Rho termination factor, N-terminal; transcription termination factor Rho complement(1630006..1631265) Nitrosomonas sp. AL212 10298212 YP_004294725.1 CDS NAL212_1690 NC_015222.1 1631410 1631736 R KEGG: nmu:Nmul_A2084 thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain; thioredoxin complement(1631410..1631736) Nitrosomonas sp. AL212 10298213 YP_004294726.1 CDS NAL212_1691 NC_015222.1 1631971 1633026 R PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: nmu:Nmul_A0730 ABC transporter related; SMART: ATPase, AAA+ type, core; Fe(3+)-transporting ATPase complement(1631971..1633026) Nitrosomonas sp. AL212 10298214 YP_004294727.1 CDS NAL212_1692 NC_015222.1 1633030 1634631 R PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: nmu:Nmul_A0731 binding-protein dependent transport system inner membrane protein; ABC transporter permease complement(1633030..1634631) Nitrosomonas sp. AL212 10298215 YP_004294728.1 CDS NAL212_1693 NC_015222.1 1634732 1635745 R PFAM: Bacterial extracellular solute-binding, family 1; KEGG: nmu:Nmul_A0732 extracellular solute-binding protein; extracellular solute-binding protein complement(1634732..1635745) Nitrosomonas sp. AL212 10298216 YP_004294729.1 CDS NAL212_1694 NC_015222.1 1635862 1636584 R PFAM: Protein of unknown function DUF3750; KEGG: neu:NE1937 hypothetical protein; hypothetical protein complement(1635862..1636584) Nitrosomonas sp. AL212 10298217 YP_004294730.1 CDS NAL212_1695 NC_015222.1 1636722 1637672 R KEGG: pfo:Pfl01_3049 hypothetical protein; hypothetical protein complement(1636722..1637672) Nitrosomonas sp. AL212 10298218 YP_004294731.1 CDS NAL212_1696 NC_015222.1 1637896 1639449 R PFAM: GTP-binding protein, HSR1-related; KEGG: alv:Alvin_1744 GTP-binding protein HSR1-related protein; GTP-binding protein HSR1-like protein complement(1637896..1639449) Nitrosomonas sp. AL212 10298219 YP_004294732.1 CDS NAL212_1697 NC_015222.1 1639446 1640675 R PFAM: Protein of unknown function DUF697; KEGG: alv:Alvin_1745 hypothetical protein; hypothetical protein complement(1639446..1640675) Nitrosomonas sp. AL212 10298220 YP_004294733.1 CDS NAL212_1698 NC_015222.1 1640925 1641650 D PFAM: Phage tail collar; KEGG: shw:Sputw3181_3688 phage tail collar domain-containing protein; Tail Collar domain-containing protein 1640925..1641650 Nitrosomonas sp. AL212 10298221 YP_004294734.1 CDS NAL212_1699 NC_015222.1 1641692 1642663 D SMART: Sel1-like; KEGG: hse:Hsero_0999 SEL1 subfamily TPR repeatcontaining protein; Sel1 domain-containing protein repeat-containing protein 1641692..1642663 Nitrosomonas sp. AL212 10298222 YP_004294735.1 CDS NAL212_1700 NC_015222.1 1642784 1648810 D KEGG: spc:Sputcn32_3550 fibronectin, type III domain-containing protein; hypothetical protein 1642784..1648810 Nitrosomonas sp. AL212 10298223 YP_004294736.1 CDS NAL212_1701 NC_015222.1 1648936 1650609 R PFAM: Glycosyl transferase, family 4; KEGG: geo:Geob_2139 phospho-N-acetylmuramoyl-pentapeptide-transferase; glycosyl transferase family protein complement(1648936..1650609) Nitrosomonas sp. AL212 10298224 YP_004294737.1 CDS NAL212_1702 NC_015222.1 1650622 1651491 R PFAM: Domain of unknown function DUF3473; Polysaccharide deacetylase; KEGG: cph:Cpha266_2617 polysaccharide deacetylase; hypothetical protein complement(1650622..1651491) Nitrosomonas sp. AL212 10298225 YP_004294738.1 CDS NAL212_1703 NC_015222.1 1651874 1653178 R PFAM: Glycerophosphoryl diester phosphodiesterase; KEGG: sde:Sde_0801 glycerophosphoryl diester phosphodiesterase family protein; glycerophosphoryl diester phosphodiesterase complement(1651874..1653178) Nitrosomonas sp. AL212 10298226 YP_004294739.1 CDS NAL212_1704 NC_015222.1 1653846 1654802 R PFAM: Alpha/beta hydrolase fold-1; KEGG: rva:Rvan_0114 alpha/beta hydrolase fold protein; alpha/beta hydrolase fold protein complement(1653846..1654802) Nitrosomonas sp. AL212 10298227 YP_004294740.1 CDS NAL212_1705 NC_015222.1 1654802 1655194 R KEGG: smc:SmuNN2025_0192 putative histidine kinase; hypothetical protein complement(1654802..1655194) Nitrosomonas sp. AL212 10298228 YP_004294741.1 CDS NAL212_1706 NC_015222.1 1655207 1655437 R KEGG: bac:BamMC406_5908 polysaccharide biosynthesis protein; hypothetical protein complement(1655207..1655437) Nitrosomonas sp. AL212 10298229 YP_004294742.1 CDS NAL212_1707 NC_015222.1 1655479 1657674 D PFAM: Putative RNA methylase; S-adenosylmethionine-dependent methyltransferase; THUMP; KEGG: mca:MCA0712 23S rRNA m(2)G2445 methyltransferase; SMART: THUMP; rRNA (guanine-N(2)-)-methyltransferase 1655479..1657674 Nitrosomonas sp. AL212 10298230 YP_004294743.1 CDS NAL212_1708 NC_015222.1 1657784 1658569 D PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: slt:Slit_0391 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1657784..1658569 Nitrosomonas sp. AL212 10298231 YP_004294744.1 CDS NAL212_1709 NC_015222.1 1658644 1659477 R PFAM: ABC-3; KEGG: nmu:Nmul_A1230 hypothetical protein; ABC transporter permease complement(1658644..1659477) Nitrosomonas sp. AL212 10298232 YP_004294745.1 CDS NAL212_1710 NC_015222.1 1659477 1660295 R PFAM: ABC transporter-like; KEGG: nmu:Nmul_A1231 ABC transporter related; SMART: ATPase, AAA+ type, core; phosphonate-transporting ATPase complement(1659477..1660295) Nitrosomonas sp. AL212 10298233 YP_004294746.1 CDS NAL212_1711 NC_015222.1 1660273 1661241 R PFAM: ABC transporter metal-binding lipoprotein; KEGG: nmu:Nmul_A1232 periplasmic solute binding protein; heavy metal ABC transporter substrate-binding protein complement(1660273..1661241) Nitrosomonas sp. AL212 10298234 YP_004294747.1 CDS NAL212_1712 NC_015222.1 1661370 1663448 D PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: nmu:Nmul_A1233 TonB-dependent receptor; TonB-dependent receptor plug 1661370..1663448 Nitrosomonas sp. AL212 10298235 YP_004294748.1 CDS NAL212_1713 NC_015222.1 1663550 1664011 D PFAM: Transcription factor, NikR, nickel binding C-terminal; CopG-like DNA-binding; KEGG: nmu:Nmul_A1234 nickel responsive regulator; CopG family transcriptional regulator NikR 1663550..1664011 Nitrosomonas sp. AL212 10298236 YP_004294749.1 CDS NAL212_1714 NC_015222.1 1664087 1665070 R KEGG: neu:NE1059 putative UreA transporter; TIGRFAM: Urea transporter, bacteria; PFAM: Urea transporter; urea transporter complement(1664087..1665070) Nitrosomonas sp. AL212 10298237 YP_004294750.1 CDS NAL212_1715 NC_015222.1 1665182 1665820 R TIGRFAM: Urease accessory protein UreG; HAMAP: Urease accessory protein UreG; KEGG: nmu:Nmul_A1244 urease accessory protein UreG; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; urease accessory protein ureG complement(1665182..1665820) Nitrosomonas sp. AL212 10298238 YP_004294751.1 CDS NAL212_1716 NC_015222.1 1665838 1666515 R KEGG: nmu:Nmul_A1243 urease accessory protein UreF; HAMAP: Urease accessory protein UreF; PFAM: Urease accessory protein UreF; urease accessory protein ureF complement(1665838..1666515) Nitrosomonas sp. AL212 10298239 YP_004294752.1 CDS NAL212_1717 NC_015222.1 1666528 1667055 R PFAM: UreE urease accessory, C-terminal; UreE urease accessory, N-terminal; KEGG: nmu:Nmul_A1242 UreE urease accessory-like; UreE urease accessory domain-containing protein complement(1666528..1667055) Nitrosomonas sp. AL212 10298240 YP_004294753.1 CDS NAL212_1718 NC_015222.1 1667182 1668888 R TIGRFAM: Urease, alpha subunit; KEGG: nmu:Nmul_A1241 urease subunit alpha; PFAM: Amidohydrolase 1; Urease alpha-subunit, N-terminal; urease subunit alpha complement(1667182..1668888) Nitrosomonas sp. AL212 10298241 YP_004294754.1 CDS NAL212_1719 NC_015222.1 1668922 1669242 R TIGRFAM: Urease, beta subunit; KEGG: nmu:Nmul_A1240 urease, beta subunit; PFAM: Urease, beta subunit; urease subunit beta complement(1668922..1669242) Nitrosomonas sp. AL212 10298242 YP_004294755.1 CDS NAL212_1720 NC_015222.1 1669268 1669570 R TIGRFAM: Urease, alpha/gamma subunit; KEGG: nmu:Nmul_A1239 urease, gamma subunit; PFAM: Urease, alpha/gamma subunit; urease subunit gamma complement(1669268..1669570) Nitrosomonas sp. AL212 10298243 YP_004294756.1 CDS NAL212_1721 NC_015222.1 1669659 1670606 R PFAM: Urease accessory protein UreD; KEGG: nmu:Nmul_A1238 urease accessory protein UreD; Urease accessory protein UreD complement(1669659..1670606) Nitrosomonas sp. AL212 10298244 YP_004294757.1 CDS NAL212_1722 NC_015222.1 1670652 1671956 R KEGG: nmu:Nmul_A1237 hypothetical protein; hypothetical protein complement(1670652..1671956) Nitrosomonas sp. AL212 10298245 YP_004294758.1 CDS NAL212_1723 NC_015222.1 1672715 1673770 D PFAM: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: slt:Slit_1450 fructose-bisphosphate aldolase; deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase 1672715..1673770 Nitrosomonas sp. AL212 10298246 YP_004294759.1 CDS NAL212_1724 NC_015222.1 1673852 1674529 R KEGG: nmu:Nmul_A2289 Sel1 repeat-containing protein; PFAM: Sel1-like; SMART: Sel1-like; Sel1 domain-containing protein repeat-containing protein complement(1673852..1674529) Nitrosomonas sp. AL212 10298247 YP_004294760.1 CDS NAL212_1725 NC_015222.1 1674613 1675362 R PFAM: Ankyrin repeat; KEGG: mba:Mbar_A2380 hypothetical protein; ankyrin complement(1674613..1675362) Nitrosomonas sp. AL212 10298248 YP_004294761.1 CDS NAL212_1726 NC_015222.1 1675710 1676882 D KEGG: nmu:Nmul_A0130 UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6; PFAM: Monooxygenase, FAD-binding; UbiH/UbiF/VisC/COQ6 family Ubiquinone biosynthesis hydroxylase 1675710..1676882 Nitrosomonas sp. AL212 10298249 YP_004294762.1 CDS NAL212_1727 NC_015222.1 1677047 1678054 D KEGG: nmu:Nmul_A0131 dihydrouridine synthase TIM-barrel protein nifR3; TIGRFAM: tRNA-dihydrouridine synthase, TIM-barrel, NifR3; PFAM: tRNA-dihydrouridine synthase; nifR3 family TIM-barrel protein 1677047..1678054 Nitrosomonas sp. AL212 10298250 YP_004294763.1 CDS NAL212_1728 NC_015222.1 1678058 1678300 D PFAM: Helix-turn-helix, Fis-type; KEGG: nmu:Nmul_A0132 fis family transcriptional regulator; Fis family transcriptional regulator 1678058..1678300 Nitrosomonas sp. AL212 10298251 YP_004294764.1 CDS NAL212_1729 NC_015222.1 1678297 1679856 D SMART: AICARFT/IMPCHase bienzyme, transformylase domain; Methylglyoxal synthase-like domain; TIGRFAM: AICARFT/IMPCHase bienzyme; KEGG: nmu:Nmul_A0133 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme, transformylase domain; Methylglyoxal synthase-like domain; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 1678297..1679856 Nitrosomonas sp. AL212 10298252 YP_004294765.1 CDS NAL212_1730 NC_015222.1 1679871 1681187 D TIGRFAM: Phosphoribosylglycinamide synthetase; KEGG: neu:NE0877 phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain; phosphoribosylamine/glycine ligase 1679871..1681187 Nitrosomonas sp. AL212 10298253 YP_004294766.1 CDS NAL212_1732 NC_015222.1 1681531 1683147 D KEGG: amr:AM1_6172 IS5 family transposase; IS5 family transposase 1681531..1683147 Nitrosomonas sp. AL212 10298255 YP_004294767.1 CDS NAL212_1733 NC_015222.1 1684189 1686105 R KEGG: nmu:Nmul_A1330 flagellar hook-associated protein FlgK; TIGRFAM: Flagellar hook-associated protein, FlgK; PFAM: Domain of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal; flagellar hook-associated protein FlgK complement(1684189..1686105) Nitrosomonas sp. AL212 10298256 YP_004294768.1 CDS NAL212_1734 NC_015222.1 1686189 1687184 R KEGG: net:Neut_0343 flagellar rod assembly protein/muramidase FlgJ; TIGRFAM: Flagellar protein FlgJ type-2; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; Flagellar protein FlgJ, N-terminal; flagellar rod assembly protein/muramidase FlgJ complement(1686189..1687184) Nitrosomonas sp. AL212 10298257 YP_004294769.1 CDS NAL212_1735 NC_015222.1 1687199 1688308 R PFAM: Flagellar P-ring protein; KEGG: neu:NE0309 flagellar basal body P-ring protein; flagellar P-ring protein complement(1687199..1688308) Nitrosomonas sp. AL212 10298258 YP_004294770.1 CDS NAL212_1736 NC_015222.1 1688354 1689070 R PFAM: Flagellar L-ring protein; KEGG: net:Neut_0341 flagellar basal body L-ring protein; flagellar L-ring protein complement(1688354..1689070) Nitrosomonas sp. AL212 10298259 YP_004294771.1 CDS NAL212_1737 NC_015222.1 1689096 1689878 R KEGG: nmu:Nmul_A1326 hypothetical protein; TIGRFAM: Flagellar basal-body rod FlgG; Fagellar hook-basal body protein, FlgE/F/G; PFAM: Domain of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal; flagellar basal-body rod protein FlgG complement(1689096..1689878) Nitrosomonas sp. AL212 10298260 YP_004294772.1 CDS NAL212_1738 NC_015222.1 1689906 1690649 R KEGG: neu:NE0306 flagellar basal body rod protein FlgF; TIGRFAM: Flagellar basal-body rod FlgF; Fagellar hook-basal body protein, FlgE/F/G; PFAM: Domain of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal; flagellar basal-body rod protein FlgF complement(1689906..1690649) Nitrosomonas sp. AL212 10298261 YP_004294773.1 CDS NAL212_1739 NC_015222.1 1690678 1691949 R KEGG: net:Neut_0338 flagellar hook protein FlgE; TIGRFAM: Fagellar hook-basal body protein, FlgE/F/G; PFAM: Flagellar basal body FlaE; Domain of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal; fagellar hook-basal body protein complement(1690678..1691949) Nitrosomonas sp. AL212 10298262 YP_004294774.1 CDS NAL212_1740 NC_015222.1 1691963 1692631 R PFAM: Flagellar hook capping protein; KEGG: neu:NE0304 flagellar basal body rod modification protein; flagellar hook capping protein complement(1691963..1692631) Nitrosomonas sp. AL212 10298263 YP_004294775.1 CDS NAL212_1741 NC_015222.1 1692643 1693044 R manually curated; TIGRFAM: Flagellar basal-body rod protein FlgC; KEGG: net:Neut_0336 flagellar basal-body rod protein FlgC; PFAM: Domain of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal; flagellar basal-body rod protein FlgC complement(1692643..1693044) Nitrosomonas sp. AL212 10298264 YP_004294776.1 CDS NAL212_1742 NC_015222.1 1693049 1693942 R KEGG: ppr:PBPRB1378 hypothetical protein; hypothetical protein complement(1693049..1693942) Nitrosomonas sp. AL212 10298265 YP_004294777.1 CDS NAL212_1743 NC_015222.1 1694028 1694438 R KEGG: slt:Slit_0565 flagellar basal-body rod protein FlgB; TIGRFAM: Flagellar basal-body rod protein FlgB; PFAM: Flagellar basal body rod protein, N-terminal; flagellar basal-body rod protein FlgB complement(1694028..1694438) Nitrosomonas sp. AL212 10298266 YP_004294778.1 CDS NAL212_1744 NC_015222.1 1694637 1695386 D TIGRFAM: Flagella basal body P-ring formation protein FlgA; PFAM: SAF domain; KEGG: net:Neut_0334 flagellar basal body P-ring biosynthesis protein FlgA; SMART: SAF domain; flagella basal body P-ring formation protein FlgA 1694637..1695386 Nitrosomonas sp. AL212 10298267 YP_004294779.1 CDS NAL212_1745 NC_015222.1 1695512 1695790 D KEGG: nmu:Nmul_A0275 hypothetical protein; hypothetical protein 1695512..1695790 Nitrosomonas sp. AL212 10298268 YP_004294780.1 CDS NAL212_1746 NC_015222.1 1695887 1696255 D PFAM: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3; KEGG: net:Neut_0867 hypothetical protein; hypothetical protein 1695887..1696255 Nitrosomonas sp. AL212 10298269 YP_004294781.1 CDS NAL212_1747 NC_015222.1 1696497 1697777 R PFAM: Protein of unknown function DUF2130; KEGG: rfr:Rfer_0075 hypothetical protein; hypothetical protein complement(1696497..1697777) Nitrosomonas sp. AL212 10298270 YP_004294782.1 CDS NAL212_1748 NC_015222.1 1698260 1700701 D TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; Signal transduction response regulator, receiver domain; Diguanylate cyclase, predicted; KEGG: cvi:CV_3260 hypothetical protein; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS; PAC motif; Signal transduction response regulator, receiver domain; response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 1698260..1700701 Nitrosomonas sp. AL212 10298271 YP_004294783.1 CDS NAL212_1749 NC_015222.1 1700732 1702135 D TIGRFAM: PAS; PFAM: Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain; PAS fold; ATPase-like, ATP-binding domain; KEGG: cvi:CV_3259 sensory transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; PAS; PAC motif; signal transduction histidine kinase 1700732..1702135 Nitrosomonas sp. AL212 10298272 YP_004294784.1 CDS NAL212_1750 NC_015222.1 1702113 1702532 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: nmu:Nmul_A1047 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR complement(1702113..1702532) Nitrosomonas sp. AL212 10298273 YP_004294785.1 CDS NAL212_1751 NC_015222.1 1702532 1703293 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: nmu:Nmul_A1048 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel complement(1702532..1703293) Nitrosomonas sp. AL212 10298274 YP_004294786.1 CDS NAL212_1752 NC_015222.1 1703297 1704010 R KEGG: nmu:Nmul_A1049 TonB-like; TIGRFAM: TonB, C-terminal; PFAM: TonB, C-terminal; TonB family protein complement(1703297..1704010) Nitrosomonas sp. AL212 10298275 YP_004294787.1 CDS NAL212_1753 NC_015222.1 1704325 1704741 D PFAM: RDD; KEGG: net:Neut_0589 RDD domain-containing protein; RDD domain-containing protein 1704325..1704741 Nitrosomonas sp. AL212 10298276 YP_004294788.1 CDS NAL212_1754 NC_015222.1 1704963 1705895 D TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: dat:HRM2_39450 GGDEF domain family protein; SMART: Diguanylate cyclase, predicted; diguanylate cyclase 1704963..1705895 Nitrosomonas sp. AL212 10298277 YP_004294789.1 CDS NAL212_1755 NC_015222.1 1706063 1708363 D KEGG: net:Neut_2488 cell divisionFtsK/SpoIIIE; PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase FtsK gamma; SMART: DNA translocase FtsK gamma; ATPase, AAA+ type, core; cell division protein FtsK/SpoIIIE 1706063..1708363 Nitrosomonas sp. AL212 10298278 YP_004294790.1 CDS NAL212_1756 NC_015222.1 1708420 1709043 D KEGG: neu:NE1052 outer membrane lipoprotein carrier protein LolA; TIGRFAM: Outer membrane lipoprotein carrier protein LolA, Proteobacteria; PFAM: Outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA 1708420..1709043 Nitrosomonas sp. AL212 10298279 YP_004294791.1 CDS NAL212_1757 NC_015222.1 1709021 1710355 D KEGG: nmu:Nmul_A0179 recombination factor protein RarA; PFAM: MgsA AAA+ ATPase C-terminal; ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; MgsA AAA+ ATPase domain-containing protein 1709021..1710355 Nitrosomonas sp. AL212 10298280 YP_004294792.1 CDS NAL212_1758 NC_015222.1 1710391 1711707 D TIGRFAM: Seryl-tRNA synthetase, class IIa; KEGG: neu:NE0180 seryl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Seryl-tRNA synthetase, class IIa, N-terminal; seryl-tRNA synthetase 1710391..1711707 Nitrosomonas sp. AL212 10298281 YP_004294793.1 CDS NAL212_1759 NC_015222.1 1711751 1712437 D KEGG: neu:NE0179 hypothetical protein; hypothetical protein 1711751..1712437 Nitrosomonas sp. AL212 10298282 YP_004294794.1 CDS NAL212_1760 NC_015222.1 1712507 1713394 R PFAM: Putative exonuclease, RdgC; KEGG: mei:Msip34_2737 putative exonuclease RdgC; exonuclease RdgC complement(1712507..1713394) Nitrosomonas sp. AL212 10298283 YP_004294795.1 CDS NAL212_1761 NC_015222.1 1713442 1713774 D KEGG: net:Neut_2161 hypothetical protein; hypothetical protein 1713442..1713774 Nitrosomonas sp. AL212 10298284 YP_004294796.1 CDS NAL212_1762 NC_015222.1 1713908 1716130 D KEGG: har:HEAR3018 putative polyribonucleotide nucleotidyltransferase; PFAM: Tex-like protein, N-terminal; Ribosomal protein S1, RNA-binding domain; SMART: Resolvase, RNase H-like fold; RNA-binding domain, S1; Helix-hairpin-helix DNA-binding motif, class 1; Tex-like protein 1713908..1716130 Nitrosomonas sp. AL212 10298285 YP_004294797.1 CDS NAL212_1763 NC_015222.1 1716846 1717832 D KEGG: cpi:Cpin_0412 ribonuclease BN; TIGRFAM: Ribonuclease BN; PFAM: Ribonuclease BN-related; ribonuclease BN 1716846..1717832 Nitrosomonas sp. AL212 10298287 YP_004294798.1 CDS NAL212_1764 NC_015222.1 1717958 1718785 R PFAM: Integrase, catalytic core; KEGG: net:Neut_1814 integrase catalytic subunit; integrase catalytic region complement(1717958..1718785) Nitrosomonas sp. AL212 10298288 YP_004294799.1 CDS NAL212_1767 NC_015222.1 1720486 1720809 R KEGG: net:Neut_2357 transport-associated; PFAM: Transport-associated; SMART: Transport-associated and nodulation domain, bacteria; transport-associated protein complement(1720486..1720809) Nitrosomonas sp. AL212 10298291 YP_004294800.1 CDS NAL212_1768 NC_015222.1 1720885 1721595 R SMART: Cyclic nucleotide-binding domain; KEGG: vap:Vapar_5993 transcriptional regulator, Crp/Fnr family; CarD family transcriptional regulator complement(1720885..1721595) Nitrosomonas sp. AL212 10298292 YP_004294801.1 CDS NAL212_1769 NC_015222.1 1721860 1722288 R KEGG: neu:NE0894 hypothetical protein; hypothetical protein complement(1721860..1722288) Nitrosomonas sp. AL212 10298293 YP_004294802.1 CDS NAL212_1770 NC_015222.1 1722442 1722834 D PFAM: Transposase IS3/IS911family; KEGG: net:Neut_1813 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 1722442..1722834 Nitrosomonas sp. AL212 10298294 YP_004294803.1 CDS NAL212_1773 NC_015222.1 1725262 1725624 R KEGG: meh:M301_1744 hypothetical protein; hypothetical protein complement(1725262..1725624) Nitrosomonas sp. AL212 10298297 YP_004294804.1 CDS NAL212_1776 NC_015222.1 1727610 1727732 R KEGG: hna:Hneap_1227 integrase catalytic region; hypothetical protein complement(1727610..1727732) Nitrosomonas sp. AL212 10298300 YP_004294805.1 CDS NAL212_1777 NC_015222.1 1727822 1727995 R hypothetical protein complement(1727822..1727995) Nitrosomonas sp. AL212 10298301 YP_004294806.1 CDS NAL212_1778 NC_015222.1 1728083 1728349 R KEGG: neu:NE0998 hypothetical protein; hypothetical protein complement(1728083..1728349) Nitrosomonas sp. AL212 10298302 YP_004294807.1 CDS NAL212_1779 NC_015222.1 1728470 1730245 R PFAM: Divalent ion symporter; Regulator of K+ conductance, C-terminal; KEGG: ttu:TERTU_0455 TrkA-C domain protein; citrate transporter complement(1728470..1730245) Nitrosomonas sp. AL212 10298303 YP_004294808.1 CDS NAL212_1780 NC_015222.1 1730495 1731016 D PFAM: Protein of unknown function DUF3617; KEGG: net:Neut_2093 hypothetical protein; hypothetical protein 1730495..1731016 Nitrosomonas sp. AL212 10298304 YP_004294809.1 CDS NAL212_1781 NC_015222.1 1731022 1732287 R TIGRFAM: Dihydrolipoamide succinyltransferase; KEGG: net:Neut_0859 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding; 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase complement(1731022..1732287) Nitrosomonas sp. AL212 10298305 YP_004294810.1 CDS NAL212_1782 NC_015222.1 1732300 1735131 R SMART: Transketolase-like, pyrimidine-binding domain; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 component; KEGG: neu:NE2374 2-oxoglutarate dehydrogenase E1 component; PFAM: Transketolase-like, pyrimidine-binding domain; Dehydrogenase, E1 component; 2-oxoglutarate dehydrogenase, E1 subunit complement(1732300..1735131) Nitrosomonas sp. AL212 10298306 YP_004294811.1 CDS NAL212_1783 NC_015222.1 1735158 1736459 R KEGG: nmu:Nmul_A0858 citrate synthase I; TIGRFAM: Citrate synthase, type II; PFAM: Citrate synthase-like; citrate synthase I complement(1735158..1736459) Nitrosomonas sp. AL212 10298307 YP_004294812.1 CDS NAL212_1784 NC_015222.1 1736538 1736771 R PFAM: Protein of unknown function DUF339; KEGG: neu:NE2372 hypothetical protein; hypothetical protein complement(1736538..1736771) Nitrosomonas sp. AL212 10298308 YP_004294813.1 CDS NAL212_1785 NC_015222.1 1736768 1737463 R KEGG: neu:NE2371 succinate dehydrogenase iron-sulfur subunit; TIGRFAM: Succinate dehydrogenase/fumarate reductase iron-sulphur protein; succinate dehydrogenase and fumarate reductase iron-sulfur protein complement(1736768..1737463) Nitrosomonas sp. AL212 10298309 YP_004294814.1 CDS NAL212_1786 NC_015222.1 1737819 1738010 D KEGG: vex:VEA_004335 hypothetical protein; hypothetical protein 1737819..1738010 Nitrosomonas sp. AL212 10298310 YP_004294815.1 CDS NAL212_1787 NC_015222.1 1738446 1739387 D KEGG: eba:ebA2728 curved DNA-binding protein; PFAM: Heat shock protein DnaJ, N-terminal; Chaperone DnaJ, C-terminal; SMART: Heat shock protein DnaJ, N-terminal; heat shock protein DnaJ domain-containing protein 1738446..1739387 Nitrosomonas sp. AL212 10298311 YP_004294816.1 CDS NAL212_1788 NC_015222.1 1739391 1739708 D KEGG: csa:Csal_1427 MerR family transcriptional regulator; MerR family transcriptional regulator 1739391..1739708 Nitrosomonas sp. AL212 10298312 YP_004294817.1 CDS NAL212_1789 NC_015222.1 1739750 1740181 D TIGRFAM: Thioredoxin; KEGG: slt:Slit_2205 thioredoxin; PFAM: Thioredoxin domain; thioredoxin 1739750..1740181 Nitrosomonas sp. AL212 10298313 YP_004294818.1 CDS NAL212_1790 NC_015222.1 1740214 1741362 D KEGG: sat:SYN_02023 endopeptidase; PFAM: Peptidase S1/S6, chymotrypsin/Hap; SMART: PDZ/DHR/GLGF; peptidase S1 and S6 chymotrypsin/Hap 1740214..1741362 Nitrosomonas sp. AL212 10298314 YP_004294819.1 CDS NAL212_1791 NC_015222.1 1741444 1745280 R PFAM: Protein of unknown function DUF490; KEGG: net:Neut_1408 hypothetical protein; hypothetical protein complement(1741444..1745280) Nitrosomonas sp. AL212 10298315 YP_004294820.1 CDS NAL212_1792 NC_015222.1 1745290 1747197 R PFAM: Bacterial surface antigen (D15); Surface antigen variable number; KEGG: net:Neut_1409 surface antigen (D15); surface antigen (D15) complement(1745290..1747197) Nitrosomonas sp. AL212 10298316 YP_004294821.1 CDS NAL212_1793 NC_015222.1 1747302 1748285 R PFAM: NAD-dependent epimerase/dehydratase; KEGG: neu:NE1170 putative dihydroflavonol-4-reductase; NAD-dependent epimerase/dehydratase complement(1747302..1748285) Nitrosomonas sp. AL212 10298317 YP_004294822.1 CDS NAL212_1794 NC_015222.1 1748282 1749304 R PFAM: Ketopantoate reductase ApbA/PanE, C-terminal; Ketopantoate reductase ApbA/PanE, N-terminal; KEGG: vdi:Vdis_0590 2-dehydropantoate 2-reductase; ketopantoate reductase ApbA/PanE domain-containing protein complement(1748282..1749304) Nitrosomonas sp. AL212 10298318 YP_004294823.1 CDS NAL212_1795 NC_015222.1 1749553 1750572 R KEGG: mca:MCA0084 hypothetical protein; hypothetical protein complement(1749553..1750572) Nitrosomonas sp. AL212 10298319 YP_004294824.1 CDS NAL212_1796 NC_015222.1 1750979 1751560 D KEGG: noc:Noc_2135 hypothetical protein; hypothetical protein 1750979..1751560 Nitrosomonas sp. AL212 10298320 YP_004294825.1 CDS NAL212_1800 NC_015222.1 1753427 1754656 R PFAM: Transposase, mutator type; KEGG: xcv:XCVc0009 transposase mutator family protein; transposase mutator type complement(1753427..1754656) Nitrosomonas sp. AL212 10298324 YP_004294826.1 CDS NAL212_1803 NC_015222.1 1756808 1758238 R KEGG: nmu:Nmul_A2657 DEAD/DEAH box helicase-like; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; DEAD/DEAH box helicase domain-containing protein complement(1756808..1758238) Nitrosomonas sp. AL212 10298327 YP_004294827.1 CDS NAL212_1804 NC_015222.1 1758465 1759154 R PFAM: NapC/NirT cytochrome c, N-terminal; KEGG: neu:NE2336 putative tetraheme C-cytochrome; NapC/NirT cytochrome c domain-containing protein complement(1758465..1759154) Nitrosomonas sp. AL212 10298328 YP_004294828.1 CDS NAL212_1805 NC_015222.1 1759154 1759876 R KEGG: neu:NE2337 cytochrome c-554 precursor; cytochrome c-554 complement(1759154..1759876) Nitrosomonas sp. AL212 10298329 YP_004294829.1 CDS NAL212_1806 NC_015222.1 1760002 1760949 R KEGG: nmu:Nmul_A2661 hypothetical protein; hypothetical protein complement(1760002..1760949) Nitrosomonas sp. AL212 10298330 YP_004294830.1 CDS NAL212_1807 NC_015222.1 1761030 1762742 R KEGG: neu:NE2339 hydroxylamine oxidoreductase; hydroxylamine oxidase complement(1761030..1762742) Nitrosomonas sp. AL212 10298331 YP_004294831.1 CDS NAL212_1808 NC_015222.1 1763019 1763282 R KEGG: nmu:Nmul_A1037 ribosomal protein S20; TIGRFAM: Ribosomal protein S20; PFAM: Ribosomal protein S20; 30S ribosomal protein S20 complement(1763019..1763282) Nitrosomonas sp. AL212 10298332 YP_004294832.1 CDS NAL212_1809 NC_015222.1 1763363 1763731 R KEGG: net:Neut_0690 hypothetical protein; hypothetical protein complement(1763363..1763731) Nitrosomonas sp. AL212 10298333 YP_004294833.1 CDS NAL212_1810 NC_015222.1 1764129 1764698 R KEGG: nwa:Nwat_1109 hypothetical protein; hypothetical protein complement(1764129..1764698) Nitrosomonas sp. AL212 10298334 YP_004294834.1 CDS NAL212_1811 NC_015222.1 1764688 1765242 R KEGG: nhl:Nhal_2587 hypothetical protein; hypothetical protein complement(1764688..1765242) Nitrosomonas sp. AL212 10298335 YP_004294835.1 CDS NAL212_1812 NC_015222.1 1765369 1766124 R KEGG: neu:NE2376 hypothetical protein; hypothetical protein complement(1765369..1766124) Nitrosomonas sp. AL212 10298336 YP_004294836.1 CDS NAL212_1813 NC_015222.1 1766879 1768183 D PFAM: Amidohydrolase 1; KEGG: net:Neut_1692 amidohydrolase; amidohydrolase 1766879..1768183 Nitrosomonas sp. AL212 10298337 YP_004294837.1 CDS NAL212_1814 NC_015222.1 1768192 1769739 D KEGG: nwa:Nwat_1114 hypothetical protein; hypothetical protein 1768192..1769739 Nitrosomonas sp. AL212 10298338 YP_004294838.1 CDS NAL212_1815 NC_015222.1 1769818 1770063 D KEGG: ere:EUBREC_3682 hypothetical ABC transporter extracellular binding protein; hypothetical protein 1769818..1770063 Nitrosomonas sp. AL212 10298339 YP_004294839.1 CDS NAL212_1816 NC_015222.1 1770149 1771828 R KEGG: nmu:Nmul_A2421 DNA repair protein RecN; TIGRFAM: DNA recombination/repair protein RecN; PFAM: RecF/RecN/SMC; DNA repair protein RecN complement(1770149..1771828) Nitrosomonas sp. AL212 10298340 YP_004294840.1 CDS NAL212_1817 NC_015222.1 1771854 1772726 R PFAM: Inorganic polyphosphate/ATP-NAD kinase, predicted; KEGG: net:Neut_0768 NAD(+)/NADH kinase family protein; ATP-NAD/AcoX kinase complement(1771854..1772726) Nitrosomonas sp. AL212 10298341 YP_004294841.1 CDS NAL212_1818 NC_015222.1 1773021 1774040 D KEGG: neu:NE1477 heat-inducible transcription repressor; TIGRFAM: Winged helix-turn-helix transcription repressor, HrcA; PFAM: Winged helix-turn-helix transcription repressor, HrcA, C-terminal; Winged helix-turn-helix transcription repressor, HrcA DNA-binding domain; heat-inducible transcription repressor HrcA 1773021..1774040 Nitrosomonas sp. AL212 10298342 YP_004294842.1 CDS NAL212_1819 NC_015222.1 1774179 1775264 D TIGRFAM: Ferrochelatase; KEGG: nmu:Nmul_A2424 ferrochelatase; PFAM: Ferrochelatase; ferrochelatase 1774179..1775264 Nitrosomonas sp. AL212 10298343 YP_004294843.1 CDS NAL212_1820 NC_015222.1 1775313 1775657 R KEGG: nhl:Nhal_1232 hypothetical protein; hypothetical protein complement(1775313..1775657) Nitrosomonas sp. AL212 10298344 YP_004294844.1 CDS NAL212_1823 NC_015222.1 1777471 1777758 D KEGG: pbe:PB000079.01.0 Plasmodium falciparum asparagine-rich protein; hypothetical protein 1777471..1777758 Nitrosomonas sp. AL212 10298347 YP_004294845.1 CDS NAL212_1824 NC_015222.1 1778291 1778629 D KEGG: mca:MCA1082 hypothetical protein; hypothetical protein 1778291..1778629 Nitrosomonas sp. AL212 10298348 YP_004294846.1 CDS NAL212_1825 NC_015222.1 1778969 1780138 D KEGG: fps:FP1731 esterase/lipase/thioesterase family protein; hypothetical protein 1778969..1780138 Nitrosomonas sp. AL212 10298349 YP_004294847.1 CDS NAL212_1829 NC_015222.1 1782732 1783712 R PFAM: Transposase, IS4-like; KEGG: atu:Atu4436 IS5 family transposase; transposase IS4 family protein complement(1782732..1783712) Nitrosomonas sp. AL212 10298353 YP_004294848.1 CDS NAL212_1830 NC_015222.1 1783804 1784685 R TIGRFAM: UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal type; KEGG: tgr:Tgr7_1549 UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; UTP-glucose-1-phosphate uridylyltransferase complement(1783804..1784685) Nitrosomonas sp. AL212 10298354 YP_004294849.1 CDS NAL212_1831 NC_015222.1 1784743 1785777 R TIGRFAM: UDP-glucose 4-epimerase; KEGG: nmu:Nmul_A0260 UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; UDP-glucose 4-epimerase complement(1784743..1785777) Nitrosomonas sp. AL212 10298355 YP_004294850.1 CDS NAL212_1832 NC_015222.1 1785857 1786816 R KEGG: nmu:Nmul_A0913 hypothetical protein; hypothetical protein complement(1785857..1786816) Nitrosomonas sp. AL212 10298356 YP_004294851.1 CDS NAL212_1833 NC_015222.1 1786897 1788801 R TIGRFAM: Sulphate adenylyltransferase, large subunit; Adenylylsulphate kinase, C-terminal; KEGG: tmz:Tmz1t_1398 sulfate adenylyltransferase, large subunit; PFAM: Adenylylsulphate kinase, C-terminal; Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; sulfate adenylyltransferase large subunit complement(1786897..1788801) Nitrosomonas sp. AL212 10298357 YP_004294852.1 CDS NAL212_1834 NC_015222.1 1788801 1789697 R TIGRFAM: Sulphate adenylyltransferase, small subunit; KEGG: pzu:PHZ_c2263 sulfate adenylyltransferase subunit 2; PFAM: Phosphoadenosine phosphosulphate reductase; sulfate adenylyltransferase small subunit complement(1788801..1789697) Nitrosomonas sp. AL212 10298358 YP_004294853.1 CDS NAL212_1835 NC_015222.1 1789959 1790051 D hypothetical protein 1789959..1790051 Nitrosomonas sp. AL212 10298359 YP_004294854.1 CDS NAL212_1836 NC_015222.1 1790273 1790605 R KEGG: mfa:Mfla_0577 putative monovalent cation/H+ antiporter subunit G; TIGRFAM: Na+/H+ antiporter subunit; PFAM: Na+/H+ antiporter subunit; monovalent cation/proton antiporter subunit MnhG/PhaG complement(1790273..1790605) Nitrosomonas sp. AL212 10298360 YP_004294855.1 CDS NAL212_1837 NC_015222.1 1790609 1790878 R PFAM: Multiple resistance and pH regulation protein F; KEGG: alv:Alvin_3105 multiple resistance and pH regulation protein F; multiple resistance and pH regulation protein F complement(1790609..1790878) Nitrosomonas sp. AL212 10298361 YP_004294856.1 CDS NAL212_1838 NC_015222.1 1790878 1791372 R PFAM: cation antiporter; KEGG: alv:Alvin_3104 cation antiporter; cation antiporter complement(1790878..1791372) Nitrosomonas sp. AL212 10298362 YP_004294857.1 CDS NAL212_1839 NC_015222.1 1791369 1792904 R KEGG: tbd:Tbd_0495 putative monovalent cation/H+ antiporter subunit D; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH dehydrogenase (quinone) complement(1791369..1792904) Nitrosomonas sp. AL212 10298363 YP_004294858.1 CDS NAL212_1840 NC_015222.1 1792901 1793230 R PFAM: NADH-ubiquinone oxidoreductase chain 4L/K; KEGG: tbd:Tbd_0496 putative monovalent cation/H+ antiporter subunit C; NADH-ubiquinone oxidoreductase chain 4L complement(1792901..1793230) Nitrosomonas sp. AL212 10298364 YP_004294859.1 CDS NAL212_1841 NC_015222.1 1793230 1796034 R KEGG: alv:Alvin_3101 NADH/ubiquinone/plastoquinone (complex I); PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; Na+/H+ antiporter MnhB subunit-related protein; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal; NADH dehydrogenase (quinone) complement(1793230..1796034) Nitrosomonas sp. AL212 10298365 YP_004294860.1 CDS NAL212_1842 NC_015222.1 1796103 1796276 R hypothetical protein complement(1796103..1796276) Nitrosomonas sp. AL212 10298366 YP_004294861.1 CDS NAL212_1843 NC_015222.1 1796773 1798479 D TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; 7TM-DISM receptor, extracellular domain, type 2; 7TM-DISM receptor, extracellular domain, type 1; KEGG: sse:Ssed_0845 diguanylate cyclase; SMART: Diguanylate cyclase, predicted; periplasmic/7TM domain sensor diguanylate cyclase 1796773..1798479 Nitrosomonas sp. AL212 10298367 YP_004294862.1 CDS NAL212_1844 NC_015222.1 1798555 1798776 R KEGG: sad:SAAV_1201 putative glycerol-3-phosphate acyltransferase PlsX; hypothetical protein complement(1798555..1798776) Nitrosomonas sp. AL212 10298368 YP_004294863.1 CDS NAL212_1847 NC_015222.1 1801289 1802902 D KEGG: bur:Bcep18194_B1388 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; o-succinylbenzoate--CoA ligase 1801289..1802902 Nitrosomonas sp. AL212 10298371 YP_004294864.1 CDS NAL212_1849 NC_015222.1 1805015 1806322 R PFAM: Transposase, IS4-like; KEGG: dde:Dde_2849 ISPg7, transposase; transposase IS4 family protein complement(1805015..1806322) Nitrosomonas sp. AL212 10298373 YP_004294865.1 CDS NAL212_1851 NC_015222.1 1806906 1807250 D KEGG: neu:NE0007 hypothetical protein; hypothetical protein 1806906..1807250 Nitrosomonas sp. AL212 10298375 YP_004294866.1 CDS NAL212_1852 NC_015222.1 1807471 1808364 R PFAM: Peptidase M48; KEGG: net:Neut_1535 heat shock protein HtpX; peptidase M48 Ste24p complement(1807471..1808364) Nitrosomonas sp. AL212 10298376 YP_004294867.1 CDS NAL212_1853 NC_015222.1 1808531 1808839 R PFAM: Septum formation initiator; KEGG: slt:Slit_1883 septum formation initiator; septum formation initiator complement(1808531..1808839) Nitrosomonas sp. AL212 10298377 YP_004294868.1 CDS NAL212_1854 NC_015222.1 1808839 1810122 R TIGRFAM: Enolase; KEGG: nmu:Nmul_A1228 phosphopyruvate hydratase; PFAM: Enolase, C-terminal; Enolase, N-terminal; enolase complement(1808839..1810122) Nitrosomonas sp. AL212 10298378 YP_004294869.1 CDS NAL212_1855 NC_015222.1 1810276 1811952 R TIGRFAM: CTP synthase; KEGG: nmu:Nmul_A1227 CTP synthetase; PFAM: CTP synthase, N-terminal; Glutamine amidotransferase class-I, C-terminal; CTP synthase complement(1810276..1811952) Nitrosomonas sp. AL212 10298379 YP_004294870.1 CDS NAL212_1856 NC_015222.1 1812040 1812924 R PFAM: Fructosamine/Ketosamine-3-kinase; KEGG: nmu:Nmul_A2329 fructosamine kinase; fructosamine/Ketosamine-3-kinase complement(1812040..1812924) Nitrosomonas sp. AL212 10298380 YP_004294871.1 CDS NAL212_1857 NC_015222.1 1812908 1814344 R TIGRFAM: Argininosuccinate lyase; KEGG: nmu:Nmul_A2328 argininosuccinate lyase; PFAM: Lyase 1, N-terminal; argininosuccinate lyase complement(1812908..1814344) Nitrosomonas sp. AL212 10298381 YP_004294872.1 CDS NAL212_1858 NC_015222.1 1814586 1815200 D KEGG: net:Neut_1268 hypothetical protein; hypothetical protein 1814586..1815200 Nitrosomonas sp. AL212 10298382 YP_004294873.1 CDS NAL212_1859 NC_015222.1 1815273 1816526 R TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; KEGG: nmu:Nmul_A0886 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: Enolpyruvate transferase domain; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(1815273..1816526) Nitrosomonas sp. AL212 10298383 YP_004294874.1 CDS NAL212_1860 NC_015222.1 1816678 1817067 D KEGG: neu:NE1851 hypothetical protein; TIGRFAM: YjgF-like protein; PFAM: Endoribonuclease L-PSP; endoribonuclease L-PSP 1816678..1817067 Nitrosomonas sp. AL212 10298384 YP_004294875.1 CDS NAL212_1861 NC_015222.1 1817072 1819111 D TIGRFAM: DNA helicase, ATP-dependent, RecG; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; Helicase, C-terminal; KEGG: nmu:Nmul_A0884 ATP-dependent DNA helicase RecG; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; ATP-dependent DNA helicase RecG 1817072..1819111 Nitrosomonas sp. AL212 10298385 YP_004294876.1 CDS NAL212_1863 NC_015222.1 1819452 1819874 R KEGG: smm:Smp_075140 hypothetical protein; hypothetical protein complement(1819452..1819874) Nitrosomonas sp. AL212 10298387 YP_004294877.1 CDS NAL212_1866 NC_015222.1 1822111 1822410 R PFAM: Transposase IS3/IS911family; KEGG: rms:RMA_0745 transposase; transposase IS3/IS911 family protein complement(1822111..1822410) Nitrosomonas sp. AL212 10298390 YP_004294878.1 CDS NAL212_1867 NC_015222.1 1822554 1822829 D hypothetical protein 1822554..1822829 Nitrosomonas sp. AL212 10298391 YP_004294879.1 CDS NAL212_1868 NC_015222.1 1822896 1823270 D KEGG: maq:Maqu_0075 hypothetical protein; hypothetical protein 1822896..1823270 Nitrosomonas sp. AL212 10298392 YP_004294880.1 CDS NAL212_1870 NC_015222.1 1823730 1824092 R KEGG: pic:PICST_49245 hypothetical protein; hypothetical protein complement(1823730..1824092) Nitrosomonas sp. AL212 10298394 YP_004294881.1 CDS NAL212_1871 NC_015222.1 1824457 1824771 D KEGG: pcu:pc0902 hypothetical protein; hypothetical protein 1824457..1824771 Nitrosomonas sp. AL212 10298395 YP_004294882.1 CDS NAL212_1872 NC_015222.1 1824778 1826115 R PFAM: Protein of unknown function DUF3422; KEGG: pna:Pnap_2555 hypothetical protein; hypothetical protein complement(1824778..1826115) Nitrosomonas sp. AL212 10298396 YP_004294883.1 CDS NAL212_1873 NC_015222.1 1826285 1827622 D TIGRFAM: Adenosylmethionine--8-amino-7-oxononanoate aminotransferase; KEGG: nmu:Nmul_A2364 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: Aminotransferase class-III; adenosylmethionine--8-amino-7-oxononanoate aminotransferase 1826285..1827622 Nitrosomonas sp. AL212 10298397 YP_004294884.1 CDS NAL212_1874 NC_015222.1 1827645 1829042 D KEGG: neu:NE0025 metallo-beta-lactamase superfamily protein; PFAM: Beta-Casp domain; RNA-metabolising metallo-beta-lactamase; Beta-lactamase-like; SMART: Beta-lactamase-like; beta-Casp domain 1827645..1829042 Nitrosomonas sp. AL212 10298398 YP_004294885.1 CDS NAL212_1875 NC_015222.1 1829384 1830352 D PFAM: Transposase, IS4-like; KEGG: mno:Mnod_5003 transposase IS4 family protein; transposase IS4 family protein 1829384..1830352 Nitrosomonas sp. AL212 10298399 YP_004294886.1 CDS NAL212_1876 NC_015222.1 1830536 1830907 D PFAM: Transposase (putative), IS66 Orf2-like; KEGG: eba:ebB55 transposase, fragment; IS66 Orf2 family protein 1830536..1830907 Nitrosomonas sp. AL212 10298400 YP_004294887.1 CDS NAL212_1877 NC_015222.1 1830961 1832544 D PFAM: Transposase, IS66; KEGG: gca:Galf_2413 transposase; transposase IS66 1830961..1832544 Nitrosomonas sp. AL212 10298401 YP_004294888.1 CDS NAL212_1882 NC_015222.1 1835036 1835401 R KEGG: pyo:PY01157 dentin phosphoryn; hypothetical protein complement(1835036..1835401) Nitrosomonas sp. AL212 10298406 YP_004294889.1 CDS NAL212_1883 NC_015222.1 1835931 1836530 D KEGG: mei:Msip34_2442 protein of unknown function DUF1555; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial; PEP motif putative anchor domain-containing protein 1835931..1836530 Nitrosomonas sp. AL212 10298407 YP_004294890.1 CDS NAL212_1884 NC_015222.1 1836605 1838221 R KEGG: amr:AM1_6172 IS5 family transposase; IS5 family transposase complement(1836605..1838221) Nitrosomonas sp. AL212 10298408 YP_004294891.1 CDS NAL212_1885 NC_015222.1 1838427 1838912 R KEGG: mae:Maeo_0822 hypothetical protein; hypothetical protein complement(1838427..1838912) Nitrosomonas sp. AL212 10298409 YP_004294892.1 CDS NAL212_1886 NC_015222.1 1839066 1839275 R KEGG: rsc:RCFBP_11249 hypothetical protein; hypothetical protein complement(1839066..1839275) Nitrosomonas sp. AL212 10298410 YP_004294893.1 CDS NAL212_1887 NC_015222.1 1839561 1840940 D PFAM: Mechanosensitive ion channel MscS; Transport-associated; KEGG: mct:MCR_0648 mechanosensitive ion channel family protein MscS; mechanosensitive ion channel MscS 1839561..1840940 Nitrosomonas sp. AL212 10298411 YP_004294894.1 CDS NAL212_1888 NC_015222.1 1841007 1841297 R KEGG: nhl:Nhal_1698 hypothetical protein; hypothetical protein complement(1841007..1841297) Nitrosomonas sp. AL212 10298412 YP_004294895.1 CDS NAL212_1889 NC_015222.1 1841462 1842769 D PFAM: Transposase, IS4-like; KEGG: dde:Dde_2849 ISPg7, transposase; transposase IS4 family protein 1841462..1842769 Nitrosomonas sp. AL212 10298413 YP_004294896.1 CDS NAL212_1890 NC_015222.1 1843093 1844187 R PFAM: Endonuclease/exonuclease/phosphatase; KEGG: dat:HRM2_00760 hypothetical protein; endonuclease/exonuclease/phosphatase complement(1843093..1844187) Nitrosomonas sp. AL212 10298414 YP_004294897.1 CDS NAL212_1891 NC_015222.1 1844667 1845098 D PFAM: Transposase IS200-like; KEGG: plu:plu4843 IS200 family transposase; transposase IS200-family protein 1844667..1845098 Nitrosomonas sp. AL212 10298415 YP_004294898.1 CDS NAL212_1893 NC_015222.1 1846528 1846905 R PFAM: Protein of unknown function DUF883, ElaB; KEGG: net:Neut_2354 hypothetical protein; hypothetical protein complement(1846528..1846905) Nitrosomonas sp. AL212 10298417 YP_004294899.1 CDS NAL212_1894 NC_015222.1 1846975 1847238 R PFAM: Protein of unknown function DUF883, ElaB; KEGG: net:Neut_2354 hypothetical protein; hypothetical protein complement(1846975..1847238) Nitrosomonas sp. AL212 10298418 YP_004294900.1 CDS NAL212_1895 NC_015222.1 1847460 1848047 R KEGG: rpb:RPB_0803 5'-nucleotidase; 5'-nucleotidase complement(1847460..1848047) Nitrosomonas sp. AL212 10298419 YP_004294901.1 CDS NAL212_1897 NC_015222.1 1849298 1849594 R PFAM: Transposase IS3/IS911family; KEGG: net:Neut_1813 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein complement(1849298..1849594) Nitrosomonas sp. AL212 10298421 YP_004294902.1 CDS NAL212_1898 NC_015222.1 1849790 1851187 D KEGG: meh:M301_0983 phospholipase D/transphosphatidylase; PFAM: Phospholipase D/Transphosphatidylase; SMART: Phospholipase D/Transphosphatidylase; phospholipase D/Transphosphatidylase 1849790..1851187 Nitrosomonas sp. AL212 10298422 YP_004294903.1 CDS NAL212_1900 NC_015222.1 1852516 1852701 D KEGG: hoh:Hoch_5517 hypothetical protein; hypothetical protein 1852516..1852701 Nitrosomonas sp. AL212 10298424 YP_004294904.1 CDS NAL212_1901 NC_015222.1 1852698 1852796 D hypothetical protein 1852698..1852796 Nitrosomonas sp. AL212 10298425 YP_004294905.1 CDS NAL212_1902 NC_015222.1 1852891 1853751 D PFAM: Uncharacterised protein family, zinc metallopeptidase putative; KEGG: gme:Gmet_2726 hypothetical protein; hypothetical protein 1852891..1853751 Nitrosomonas sp. AL212 10298426 YP_004294906.1 CDS NAL212_1903 NC_015222.1 1854171 1854863 R PFAM: Protein of unknown function DUF3465; KEGG: neu:NE2443 hypothetical protein; hypothetical protein complement(1854171..1854863) Nitrosomonas sp. AL212 10298427 YP_004294907.1 CDS NAL212_1904 NC_015222.1 1855577 1855729 R KEGG: ckr:CKR_2465 hypothetical protein; hypothetical protein complement(1855577..1855729) Nitrosomonas sp. AL212 10298428 YP_004294908.1 CDS NAL212_1906 NC_015222.1 1856962 1857141 D KEGG: gym:GYMC10_3357 protein of unknown function DUF1232; hypothetical protein 1856962..1857141 Nitrosomonas sp. AL212 10298430 YP_004294909.1 CDS NAL212_1907 NC_015222.1 1857350 1858717 D KEGG: dar:Daro_3555 chromate transporter; TIGRFAM: Chromate transporter, long chain; PFAM: Chromate transporter; chromate ion transporter family chromate transporter 1857350..1858717 Nitrosomonas sp. AL212 10298431 YP_004294910.1 CDS NAL212_1909 NC_015222.1 1859121 1860056 R KEGG: net:Neut_1951 ribokinase-like domain-containing protein; PFAM: Carbohydrate/purine kinase; adenosine kinase complement(1859121..1860056) Nitrosomonas sp. AL212 10298433 YP_004294911.1 CDS NAL212_1910 NC_015222.1 1860100 1861554 R PFAM: Glycine cleavage system P-protein, N-terminal; KEGG: nmu:Nmul_A0210 glycine dehydrogenase subunit 2; glycine cleavage system P-protein complement(1860100..1861554) Nitrosomonas sp. AL212 10298434 YP_004294912.1 CDS NAL212_1911 NC_015222.1 1861577 1862074 R PFAM: Redoxin; KEGG: nmu:Nmul_A0211 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; redoxin domain-containing protein complement(1861577..1862074) Nitrosomonas sp. AL212 10298435 YP_004294913.1 CDS NAL212_1912 NC_015222.1 1862130 1863482 R KEGG: neu:NE0609 glycine dehydrogenase subunit 1; PFAM: Glycine cleavage system P-protein, N-terminal; glycine dehydrogenase complement(1862130..1863482) Nitrosomonas sp. AL212 10298436 YP_004294914.1 CDS NAL212_1913 NC_015222.1 1863557 1863946 R KEGG: net:Neut_1954 glycine cleavage system protein H; TIGRFAM: Glycine cleavage H-protein, subgroup; PFAM: Glycine cleavage H-protein; glycine cleavage system H protein complement(1863557..1863946) Nitrosomonas sp. AL212 10298437 YP_004294915.1 CDS NAL212_1914 NC_015222.1 1863993 1865075 R PFAM: Glycine cleavage T-protein, N-terminal; Glycine cleavage T-protein, C-terminal barrel; TIGRFAM: Glycine cleavage system T protein; HAMAP: Aminomethyltransferase; KEGG: nmu:Nmul_A0214 glycine cleavage system aminomethyltransferase T; aminomethyltransferase complement(1863993..1865075) Nitrosomonas sp. AL212 10298438 YP_004294916.1 CDS NAL212_1915 NC_015222.1 1865505 1866098 R KEGG: tet:TTHERM_00441910 hypothetical protein; hypothetical protein complement(1865505..1866098) Nitrosomonas sp. AL212 10298439 YP_004294917.1 CDS NAL212_1916 NC_015222.1 1866121 1868139 R PFAM: Copper resistance D; Cytochrome c, class I; KEGG: nmu:Nmul_A2760 cytochrome c, class I; copper resistance D domain-containing protein complement(1866121..1868139) Nitrosomonas sp. AL212 10298440 YP_004294918.1 CDS NAL212_1918 NC_015222.1 1868694 1869008 R KEGG: mei:Msip34_2654 transport-associated; PFAM: Transport-associated; SMART: Transport-associated and nodulation domain, bacteria; transport-associated protein complement(1868694..1869008) Nitrosomonas sp. AL212 10298442 YP_004294919.1 CDS NAL212_1919 NC_015222.1 1869123 1869473 R KEGG: net:Neut_1326 hypothetical protein; hypothetical protein complement(1869123..1869473) Nitrosomonas sp. AL212 10298443 YP_004294920.1 CDS NAL212_1920 NC_015222.1 1869612 1869839 R KEGG: tvo:TVN0219 multidrug efflux permease; hypothetical protein complement(1869612..1869839) Nitrosomonas sp. AL212 10298444 YP_004294921.1 CDS NAL212_1921 NC_015222.1 1870000 1871199 D PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: nmu:Nmul_A0954 hypothetical protein; hypothetical protein 1870000..1871199 Nitrosomonas sp. AL212 10298445 YP_004294922.1 CDS NAL212_1922 NC_015222.1 1871334 1872626 D PFAM: Phosphate-selective porin O/P; KEGG: nmu:Nmul_A1267 phosphate-selective porin O and P; phosphate-selective porin O and P 1871334..1872626 Nitrosomonas sp. AL212 10298446 YP_004294923.1 CDS NAL212_1923 NC_015222.1 1872693 1873232 D PFAM: Glutathione peroxidase; KEGG: alv:Alvin_2032 peroxiredoxin; glutathione peroxidase 1872693..1873232 Nitrosomonas sp. AL212 10298447 YP_004294924.1 CDS NAL212_1924 NC_015222.1 1873237 1873854 D KEGG: nmu:Nmul_A1303 hypothetical protein; hypothetical protein 1873237..1873854 Nitrosomonas sp. AL212 10298448 YP_004294925.1 CDS NAL212_1925 NC_015222.1 1874002 1875420 R PFAM: Peptidase C13, legumain; KEGG: app:CAP2UW1_3877 peptidase C13, legumain asparaginyl peptidase; peptidase C13, legumain asparaginyl peptidase complement(1874002..1875420) Nitrosomonas sp. AL212 10298449 YP_004294926.1 CDS NAL212_1926 NC_015222.1 1875842 1876792 D KEGG: rfr:Rfer_0364 response regulator receiver modulated CheW protein; PFAM: CheW-like protein; Signal transduction response regulator, receiver domain; SMART: CheW-like protein; Signal transduction response regulator, receiver domain; response regulator receiver modulated CheW protein 1875842..1876792 Nitrosomonas sp. AL212 10298450 YP_004294927.1 CDS NAL212_1927 NC_015222.1 1876859 1877290 R KEGG: neu:NE0900 hypothetical protein; hypothetical protein complement(1876859..1877290) Nitrosomonas sp. AL212 10298451 YP_004294928.1 CDS NAL212_1928 NC_015222.1 1877400 1879292 R KEGG: nmu:Nmul_A1969 hypothetical protein; hypothetical protein complement(1877400..1879292) Nitrosomonas sp. AL212 10298452 YP_004294929.1 CDS NAL212_1929 NC_015222.1 1879305 1879577 R KEGG: nmu:Nmul_A1968 hypothetical protein; hypothetical protein complement(1879305..1879577) Nitrosomonas sp. AL212 10298453 YP_004294930.1 CDS NAL212_1930 NC_015222.1 1879640 1880236 R PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: nmu:Nmul_A1967 TetR family transcriptional regulator; TetR family transcriptional regulator complement(1879640..1880236) Nitrosomonas sp. AL212 10298454 YP_004294931.1 CDS NAL212_1931 NC_015222.1 1880497 1880781 R KEGG: ttu:TERTU_3998 hypothetical protein; hypothetical protein complement(1880497..1880781) Nitrosomonas sp. AL212 10298455 YP_004294932.1 CDS NAL212_1932 NC_015222.1 1880791 1881450 R KEGG: swp:swp_4487 hypothetical protein; hypothetical protein complement(1880791..1881450) Nitrosomonas sp. AL212 10298456 YP_004294933.1 CDS NAL212_1933 NC_015222.1 1881654 1882109 D KEGG: tcr:511827.20 hypothetical protein; hypothetical protein 1881654..1882109 Nitrosomonas sp. AL212 10298457 YP_004294934.1 CDS NAL212_1934 NC_015222.1 1882271 1883503 D KEGG: nmu:Nmul_A1555 response regulator receiver/diguanylate phosphodiesterase; PFAM: Diguanylate phosphodiesterase, EAL domain; Signal transduction response regulator, receiver domain; SMART: Diguanylate phosphodiesterase, EAL domain; Signal transduction response regulator, receiver domain; response regulator receiver modulated diguanylate phosphodiesterase 1882271..1883503 Nitrosomonas sp. AL212 10298458 YP_004294935.1 CDS NAL212_1935 NC_015222.1 1883537 1884517 R KEGG: nmr:Nmar_1133 kelch repeat-containing protein; PFAM: Kelch repeat type 1; SMART: Kelch repeat type 1; Kelch repeat type 1-containing protein complement(1883537..1884517) Nitrosomonas sp. AL212 10298459 YP_004294936.1 CDS NAL212_1936 NC_015222.1 1884571 1885083 R PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: sun:SUN_0937 acetyltransferase; GCN5-like N-acetyltransferase complement(1884571..1885083) Nitrosomonas sp. AL212 10298460 YP_004294937.1 CDS NAL212_1937 NC_015222.1 1885125 1885508 R PFAM: Invasion gene expression up-regulator, SirB; KEGG: nmu:Nmul_A2077 invasion gene expression up-regulator, SirB; invasion gene expression up-regulator SirB complement(1885125..1885508) Nitrosomonas sp. AL212 10298461 YP_004294938.1 CDS NAL212_1938 NC_015222.1 1885511 1885993 R KEGG: nmu:Nmul_A2076 hypothetical protein; hypothetical protein complement(1885511..1885993) Nitrosomonas sp. AL212 10298462 YP_004294939.1 CDS NAL212_1939 NC_015222.1 1886085 1886483 R PFAM: Protein of unknown function DUF3478; KEGG: net:Neut_1678 hypothetical protein; hypothetical protein complement(1886085..1886483) Nitrosomonas sp. AL212 10298463 YP_004294940.1 CDS NAL212_1940 NC_015222.1 1886521 1887381 R PFAM: Drug/metabolite transporter; KEGG: net:Neut_1679 hypothetical protein; hypothetical protein complement(1886521..1887381) Nitrosomonas sp. AL212 10298464 YP_004294941.1 CDS NAL212_1941 NC_015222.1 1887426 1888538 R PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: neu:NE1503 Rieske iron-sulfur protein 2Fe-2S subunit; rieske (2Fe-2S) iron-sulfur domain complement(1887426..1888538) Nitrosomonas sp. AL212 10298465 YP_004294942.1 CDS NAL212_1942 NC_015222.1 1888762 1890171 D KEGG: nmu:Nmul_A1578 hypothetical protein; hypothetical protein 1888762..1890171 Nitrosomonas sp. AL212 10298466 YP_004294943.1 CDS NAL212_1943 NC_015222.1 1890228 1892441 D TIGRFAM: Primosomal protein n; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; KEGG: nmu:Nmul_A2327 primosomal protein N'; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; primosomal protein N' 1890228..1892441 Nitrosomonas sp. AL212 10298467 YP_004294944.1 CDS NAL212_1944 NC_015222.1 1892551 1892766 R KEGG: pyo:PY00634 hypothetical protein; hypothetical protein complement(1892551..1892766) Nitrosomonas sp. AL212 10298468 YP_004294945.1 CDS NAL212_1945 NC_015222.1 1892853 1895294 D KEGG: nmu:Nmul_A0727 putative signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; putative signal transduction histidine kinase 1892853..1895294 Nitrosomonas sp. AL212 10298469 YP_004294946.1 CDS NAL212_1946 NC_015222.1 1895296 1895952 D KEGG: nmu:Nmul_A0728 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; two component transcriptional regulator, LuxR family 1895296..1895952 Nitrosomonas sp. AL212 10298470 YP_004294947.1 CDS NAL212_1947 NC_015222.1 1896079 1896543 D KEGG: nmu:Nmul_A0729 hypothetical protein; hypothetical protein 1896079..1896543 Nitrosomonas sp. AL212 10298471 YP_004294948.1 CDS NAL212_1948 NC_015222.1 1896673 1898049 D PFAM: Protein of unknown function DUF1597; KEGG: nmu:Nmul_A0439 hypothetical protein; hypothetical protein 1896673..1898049 Nitrosomonas sp. AL212 10298472 YP_004294949.1 CDS NAL212_1949 NC_015222.1 1898100 1898501 R KEGG: nmu:Nmul_A1630 hypothetical protein; hypothetical protein complement(1898100..1898501) Nitrosomonas sp. AL212 10298473 YP_004294950.1 CDS NAL212_1950 NC_015222.1 1898681 1900036 D PFAM: Protein of unknown function DUF1597; KEGG: nmu:Nmul_A0439 hypothetical protein; hypothetical protein 1898681..1900036 Nitrosomonas sp. AL212 10298474 YP_004294951.1 CDS NAL212_1951 NC_015222.1 1900137 1903244 D KEGG: nmu:Nmul_A1564 hypothetical protein; hypothetical protein 1900137..1903244 Nitrosomonas sp. AL212 10298475 YP_004294952.1 CDS NAL212_1952 NC_015222.1 1903427 1905175 R KEGG: net:Neut_1339 DNA mismatch repair protein MutS domain-containing protein; PFAM: DNA mismatch repair protein MutS, C-terminal; SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS domain-containing protein complement(1903427..1905175) Nitrosomonas sp. AL212 10298476 YP_004294953.1 CDS NAL212_1953 NC_015222.1 1905194 1906354 D KEGG: nmu:Nmul_A0950 secretion protein HlyD; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit 1905194..1906354 Nitrosomonas sp. AL212 10298477 YP_004294954.1 CDS NAL212_1954 NC_015222.1 1906357 1907040 D PFAM: ABC transporter-like; KEGG: nmu:Nmul_A0951 ABC transporter related; SMART: ATPase, AAA+ type, core; phosphonate-transporting ATPase 1906357..1907040 Nitrosomonas sp. AL212 10298478 YP_004294955.1 CDS NAL212_1955 NC_015222.1 1907027 1908229 D PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: nmu:Nmul_A0953 hypothetical protein; hypothetical protein 1907027..1908229 Nitrosomonas sp. AL212 10298479 YP_004294956.1 CDS NAL212_1956 NC_015222.1 1908425 1908868 D PFAM: Transposase IS200-like; KEGG: pin:Ping_3671 transposase IS200-family protein; transposase IS200-family protein 1908425..1908868 Nitrosomonas sp. AL212 10298480 YP_004294957.1 CDS NAL212_1957 NC_015222.1 1908928 1909122 R KEGG: spu:591175 similar to DiGeorge syndrome critical region gene 8; hypothetical protein complement(1908928..1909122) Nitrosomonas sp. AL212 10298481 YP_004294958.1 CDS NAL212_1958 NC_015222.1 1909399 1910154 D KEGG: pla:Plav_0800 hypothetical protein; hypothetical protein 1909399..1910154 Nitrosomonas sp. AL212 10298482 YP_004294959.1 CDS NAL212_1959 NC_015222.1 1911411 1911956 R KEGG: rce:RC1_3866 sulfate ABC transporter, permease protein CysW; hypothetical protein complement(1911411..1911956) Nitrosomonas sp. AL212 10298485 YP_004294960.1 CDS NAL212_1960 NC_015222.1 1912093 1912317 R KEGG: bpb:bpr_I1143 hypothetical protein; hypothetical protein complement(1912093..1912317) Nitrosomonas sp. AL212 10298486 YP_004294961.1 CDS NAL212_1961 NC_015222.1 1912413 1912979 R KEGG: pif:PITG_06149 hypothetical protein; hypothetical protein complement(1912413..1912979) Nitrosomonas sp. AL212 10298487 YP_004294962.1 CDS NAL212_1962 NC_015222.1 1912995 1913684 R KEGG: syf:Synpcc7942_0280 competence damage-inducible protein A; hypothetical protein complement(1912995..1913684) Nitrosomonas sp. AL212 10298488 YP_004294963.1 CDS NAL212_1963 NC_015222.1 1913971 1914606 R KEGG: meh:M301_1151 hypothetical protein; hypothetical protein complement(1913971..1914606) Nitrosomonas sp. AL212 10298489 YP_004294964.1 CDS NAL212_1964 NC_015222.1 1914603 1916012 R PFAM: ParB-like nuclease; KEGG: sus:Acid_1672 hypothetical protein; ParB domain-containing protein nuclease complement(1914603..1916012) Nitrosomonas sp. AL212 10298490 YP_004294965.1 CDS NAL212_1965 NC_015222.1 1916009 1916326 R KEGG: rpf:Rpic12D_3450 hypothetical protein; hypothetical protein complement(1916009..1916326) Nitrosomonas sp. AL212 10298491 YP_004294966.1 CDS NAL212_1966 NC_015222.1 1916329 1916541 R KEGG: ajs:Ajs_3336 hypothetical protein; hypothetical protein complement(1916329..1916541) Nitrosomonas sp. AL212 10298492 YP_004294967.1 CDS NAL212_1967 NC_015222.1 1916618 1917265 R KEGG: pmx:PERMA_1975 DNA topoisomerase I; hypothetical protein complement(1916618..1917265) Nitrosomonas sp. AL212 10298493 YP_004294968.1 CDS NAL212_1968 NC_015222.1 1917384 1918160 R KEGG: spu:589410 hypothetical LOC589410; hypothetical protein complement(1917384..1918160) Nitrosomonas sp. AL212 10298494 YP_004294969.1 CDS NAL212_1969 NC_015222.1 1918268 1918555 R KEGG: ajs:Ajs_3338 hypothetical protein; hypothetical protein complement(1918268..1918555) Nitrosomonas sp. AL212 10298495 YP_004294970.1 CDS NAL212_1970 NC_015222.1 1918533 1918808 R PFAM: Protein of unknown function DUF497; KEGG: bbr:BB1689 hypothetical protein; hypothetical protein complement(1918533..1918808) Nitrosomonas sp. AL212 10298496 YP_004294971.1 CDS NAL212_1971 NC_015222.1 1918862 1920166 R PFAM: Integrase, catalytic core, phage; KEGG: har:HEAR3023 CP4-6 prophage; phage integrase; integrase family protein complement(1918862..1920166) Nitrosomonas sp. AL212 10298497 YP_004294972.1 CDS NAL212_1973 NC_015222.1 1921028 1922050 D PFAM: Integrase, catalytic core; Resolvase, helix-turn-helix domain; KEGG: pst:PSPTO_B0040 ISPsy4, transposase; integrase catalytic region 1921028..1922050 Nitrosomonas sp. AL212 10298499 YP_004294973.1 CDS NAL212_1974 NC_015222.1 1922047 1922829 D KEGG: pst:PSPTO_B0039 transposase/IS protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; IstB domain-containing protein ATP-binding protein 1922047..1922829 Nitrosomonas sp. AL212 10298500 YP_004294974.1 CDS NAL212_1975 NC_015222.1 1923209 1924081 R KEGG: cph:Cpha266_1072 GCN5-related N-acetyltransferase; manually curated; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; GCN5-like N-acetyltransferase complement(1923209..1924081) Nitrosomonas sp. AL212 10298501 YP_004294975.1 CDS NAL212_1976 NC_015222.1 1924177 1924458 R PFAM: High potential iron-sulphur protein; KEGG: tin:Tint_1104 hypothetical protein; High potential iron-sulfur protein complement(1924177..1924458) Nitrosomonas sp. AL212 10298502 YP_004294976.1 CDS NAL212_1977 NC_015222.1 1924704 1924967 R KEGG: hel:HELO_1487 exodeoxyribonuclease V, beta subunit; hypothetical protein complement(1924704..1924967) Nitrosomonas sp. AL212 10298503 YP_004294977.1 CDS NAL212_1978 NC_015222.1 1925120 1925266 D hypothetical protein 1925120..1925266 Nitrosomonas sp. AL212 10298504 YP_004294978.1 CDS NAL212_1979 NC_015222.1 1925279 1925461 R KEGG: ecb:100062488 phosphoribosylformylglycinamidine synthase; hypothetical protein complement(1925279..1925461) Nitrosomonas sp. AL212 10298505 YP_004294979.1 CDS NAL212_1980 NC_015222.1 1925594 1927549 R TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type; PFAM: RQC domain; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain; KEGG: rme:Rmet_3328 ATP-dependent DNA helicase RecQ; SMART: RQC domain; DEAD-like helicase, N-terminal; Helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain; ATP-dependent DNA helicase RecQ complement(1925594..1927549) Nitrosomonas sp. AL212 10298506 YP_004294980.1 CDS NAL212_1981 NC_015222.1 1927670 1929079 D TIGRFAM: Glutamine synthetase type I; KEGG: nmu:Nmul_A2288 glutamine synthetase, type I; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp; type I glutamine synthetase 1927670..1929079 Nitrosomonas sp. AL212 10298507 YP_004294981.1 CDS NAL212_1982 NC_015222.1 1929277 1929726 D KEGG: cvi:CV_3590 hypothetical protein; hypothetical protein 1929277..1929726 Nitrosomonas sp. AL212 10298508 YP_004294982.1 CDS NAL212_1983 NC_015222.1 1929727 1930179 D KEGG: mms:mma_1079 hypothetical protein; hypothetical protein 1929727..1930179 Nitrosomonas sp. AL212 10298509 YP_004294983.1 CDS NAL212_1984 NC_015222.1 1930276 1931061 R TIGRFAM: Exodeoxyribonuclease III xth; AP endonuclease, family 1; KEGG: neu:NE0023 exodeoxyribonuclease III:exodeoxyribonuclease III xth; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III Xth complement(1930276..1931061) Nitrosomonas sp. AL212 10298510 YP_004294984.1 CDS NAL212_1985 NC_015222.1 1931126 1933054 R KEGG: nmu:Nmul_A1412 helicase C2; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; SMART: Helicase, ATP-dependent, c2 type; DEAD-like helicase, N-terminal; DEAD/DEAH box helicase domain-containing protein complement(1931126..1933054) Nitrosomonas sp. AL212 10298511 YP_004294985.1 CDS NAL212_1986 NC_015222.1 1933244 1933549 R PFAM: Uncharacterised protein family UPF0125; KEGG: nmu:Nmul_A1201 hypothetical protein; hypothetical protein complement(1933244..1933549) Nitrosomonas sp. AL212 10298512 YP_004294986.1 CDS NAL212_1987 NC_015222.1 1933546 1933983 R PFAM: Streptomyces cyclase/dehydrase; KEGG: nmu:Nmul_A1202 cyclase/dehydrase; cyclase/dehydrase complement(1933546..1933983) Nitrosomonas sp. AL212 10298513 YP_004294987.1 CDS NAL212_1988 NC_015222.1 1934072 1934515 D KEGG: nmu:Nmul_A1203 SsrA-binding protein; TIGRFAM: SsrA-binding protein; PFAM: SsrA-binding protein; SsrA-binding protein 1934072..1934515 Nitrosomonas sp. AL212 10298514 YP_004294988.1 CDS NAL212_1989 NC_015222.1 1934568 1935581 D KEGG: nmu:Nmul_A1204 cytochrome oxidase assembly; HAMAP: Heme A synthase/Protoheme IX farnesyltransferase; PFAM: Heme A synthase/Protoheme IX farnesyltransferase; Heme A synthase 1934568..1935581 Nitrosomonas sp. AL212 10298515 YP_004294989.1 CDS NAL212_1990 NC_015222.1 1935649 1936848 R TIGRFAM: Thiolase; KEGG: neu:NE1527 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal; acetyl-CoA acetyltransferase complement(1935649..1936848) Nitrosomonas sp. AL212 10298516 YP_004294990.1 CDS NAL212_1991 NC_015222.1 1936872 1939403 R PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; Crotonase, core; KEGG: nmu:Nmul_A0097 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein complement(1936872..1939403) Nitrosomonas sp. AL212 10298517 YP_004294991.1 CDS NAL212_1992 NC_015222.1 1939584 1939937 R KEGG: bmq:BMQ_5004 hypothetical protein; TIGRFAM: Transcriptional regulator Spx/MgsR; PFAM: Arsenate reductase-like; ArsC family protein complement(1939584..1939937) Nitrosomonas sp. AL212 10298518 YP_004294992.1 CDS NAL212_1993 NC_015222.1 1939941 1940279 R PFAM: Cupin 2, conserved barrel; KEGG: cyn:Cyan7425_0091 cupin 2 conserved barrel domain protein; cupin 2 barrel domain-containing protein complement(1939941..1940279) Nitrosomonas sp. AL212 10298519 YP_004294993.1 CDS NAL212_1994 NC_015222.1 1940531 1941697 D KEGG: mlo:mlr9349 hypothetical protein; hypothetical protein 1940531..1941697 Nitrosomonas sp. AL212 10298520 YP_004294994.1 CDS NAL212_1995 NC_015222.1 1941765 1943024 R PFAM: Alpha/beta hydrolase, N-terminal; KEGG: dac:Daci_6038 alpha/beta hydrolase fold protein; alpha/beta hydrolase, N-terminal protein complement(1941765..1943024) Nitrosomonas sp. AL212 10298521 YP_004294995.1 CDS NAL212_1996 NC_015222.1 1943035 1946730 R KEGG: cch:Cag_0738 VCBS; hypothetical protein complement(1943035..1946730) Nitrosomonas sp. AL212 10298522 YP_004294996.1 CDS NAL212_1997 NC_015222.1 1947172 1950354 R KEGG: cyj:Cyan7822_6760 outer membrane adhesin like proteiin; outer membrane adhesin like protein complement(1947172..1950354) Nitrosomonas sp. AL212 10298523 YP_004294997.1 CDS NAL212_1998 NC_015222.1 1950369 1951820 R TIGRFAM: Conserved hypothetical protein CHP03032; KEGG: cch:Cag_0733 hypothetical protein; hypothetical protein complement(1950369..1951820) Nitrosomonas sp. AL212 10298524 YP_004294998.1 CDS NAL212_1999 NC_015222.1 1951873 1952559 R KEGG: neu:NE2386 SH3 domain-containing protein; PFAM: SH3, type 3; SMART: SH3-like domain, bacterial; SH3 type 3 domain-containing protein complement(1951873..1952559) Nitrosomonas sp. AL212 10298525 YP_004294999.1 CDS NAL212_2000 NC_015222.1 1952630 1954393 R TIGRFAM: Succinate dehydrogenase, flavoprotein subunit; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; KEGG: nmu:Nmul_A0861 succinate dehydrogenase, flavoprotein subunit; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal; succinate dehydrogenase, flavoprotein subunit complement(1952630..1954393) Nitrosomonas sp. AL212 10298526 YP_004295000.1 CDS NAL212_2001 NC_015222.1 1954395 1954748 R KEGG: nmu:Nmul_A0862 succinate dehydrogenase, cytochrome b subunit; TIGRFAM: Succinate dehydrogenase, hydrophobic membrane anchor; PFAM: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit; succinate dehydrogenase, hydrophobic membrane anchor protein complement(1954395..1954748) Nitrosomonas sp. AL212 10298527 YP_004295001.1 CDS NAL212_2002 NC_015222.1 1954742 1955131 R KEGG: nmu:Nmul_A0863 succinate dehydrogenase, cytochrome b subunit; TIGRFAM: Succinate dehydrogenase, cytochrome b556 subunit; PFAM: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit; succinate dehydrogenase, cytochrome b556 subunit complement(1954742..1955131) Nitrosomonas sp. AL212 10298528 YP_004295002.1 CDS NAL212_2003 NC_015222.1 1955437 1956300 D KEGG: mpt:Mpe_A0556 putative lipoprotein; putative lipoprotein 1955437..1956300 Nitrosomonas sp. AL212 10298529 YP_004295003.1 CDS NAL212_2004 NC_015222.1 1956519 1958588 D PFAM: Haemolysin-type calcium-binding repeat; FG-GAP; KEGG: syf:Synpcc7942_1337 integrins alpha chain; hemolysin-type calcium-binding protein 1956519..1958588 Nitrosomonas sp. AL212 10298530 YP_004295004.1 CDS NAL212_2005 NC_015222.1 1959107 1960303 D TIGRFAM: Succinyldiaminopimelate transaminase, beta/gammaproteobacteria; KEGG: nmu:Nmul_A1850 succinyldiaminopimelate transaminase; PFAM: Aminotransferase, class I/classII; succinyldiaminopimelate transaminase 1959107..1960303 Nitrosomonas sp. AL212 10298531 YP_004295005.1 CDS NAL212_2006 NC_015222.1 1960335 1961156 D KEGG: neu:NE2462 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; TIGRFAM: 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 1960335..1961156 Nitrosomonas sp. AL212 10298532 YP_004295006.1 CDS NAL212_2007 NC_015222.1 1961207 1961542 R PFAM: Transport-associated; KEGG: nmu:Nmul_A0093 transport-associated protein; transport-associated protein complement(1961207..1961542) Nitrosomonas sp. AL212 10298533 YP_004295007.1 CDS NAL212_2008 NC_015222.1 1961709 1962665 R TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; KEGG: neu:NE1976 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; tRNA delta(2)-isopentenylpyrophosphate transferase complement(1961709..1962665) Nitrosomonas sp. AL212 10298534 YP_004295008.1 CDS NAL212_2009 NC_015222.1 1962832 1963020 D manually curated; KEGG: neu:NE1977 putative transmembrane protein; putative transmembrane protein 1962832..1963020 Nitrosomonas sp. AL212 10298535 YP_004295009.1 CDS NAL212_2010 NC_015222.1 1963069 1964280 D KEGG: nmu:Nmul_A2547 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP00275, flavoprotein HI0933-like; PFAM: Conserved hypothetical protein CHP00275, flavoprotein HI0933-like; hypothetical protein 1963069..1964280 Nitrosomonas sp. AL212 10298536 YP_004295010.1 CDS NAL212_2011 NC_015222.1 1964319 1964900 R PFAM: Methyltransferase type 11; KEGG: gsu:GSU0630 hypothetical protein; type 11 methyltransferase complement(1964319..1964900) Nitrosomonas sp. AL212 10298537 YP_004295011.1 CDS NAL212_2012 NC_015222.1 1965464 1967602 D KEGG: cyt:cce_4430 putative sialidase; hypothetical protein 1965464..1967602 Nitrosomonas sp. AL212 10298538 YP_004295012.1 CDS NAL212_2013 NC_015222.1 1967730 1967891 R hypothetical protein complement(1967730..1967891) Nitrosomonas sp. AL212 10298539 YP_004295013.1 CDS NAL212_2014 NC_015222.1 1967918 1968526 D PFAM: LemA; KEGG: nmu:Nmul_A2119 hypothetical protein; LemA family protein 1967918..1968526 Nitrosomonas sp. AL212 10298540 YP_004295014.1 CDS NAL212_2015 NC_015222.1 1968595 1969455 D PFAM: Protein of unknown function DUF477; KEGG: nmu:Nmul_A2118 hypothetical protein; hypothetical protein 1968595..1969455 Nitrosomonas sp. AL212 10298541 YP_004295015.1 CDS NAL212_2016 NC_015222.1 1969456 1969956 D PFAM: Protein of unknown function DUF477; KEGG: nmu:Nmul_A2117 hypothetical protein; hypothetical protein 1969456..1969956 Nitrosomonas sp. AL212 10298542 YP_004295016.1 CDS NAL212_2017 NC_015222.1 1970791 1972317 D KEGG: nmu:Nmul_A0679 cytochrome c peroxidase; cytochrome c peroxidase 1970791..1972317 Nitrosomonas sp. AL212 10298543 YP_004295017.1 CDS NAL212_2018 NC_015222.1 1972470 1974434 D PFAM: AsmA; KEGG: sml:Smlt3639 putative outer membrane protein assembly protein; AsmA family protein 1972470..1974434 Nitrosomonas sp. AL212 10298544 YP_004295018.1 CDS NAL212_2019 NC_015222.1 1974460 1974774 D PFAM: Transport-associated; KEGG: ypb:YPTS_2195 transport-associated; transport-associated protein 1974460..1974774 Nitrosomonas sp. AL212 10298545 YP_004295019.1 CDS NAL212_2020 NC_015222.1 1974871 1976163 D KEGG: nmu:Nmul_A1511 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP03440; PFAM: Sulphatase-modifying factor; hypothetical protein 1974871..1976163 Nitrosomonas sp. AL212 10298546 YP_004295020.1 CDS NAL212_2021 NC_015222.1 1976201 1977175 R KEGG: pha:PSHAa1438 hypothetical protein; TIGRFAM: Methyltransferase-like; PFAM: Protein of unknown function DUF2260; methyltransferase complement(1976201..1977175) Nitrosomonas sp. AL212 10298547 YP_004295021.1 CDS NAL212_2022 NC_015222.1 1977159 1978493 R KEGG: pha:PSHAa1437 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP03440; PFAM: Sulphatase-modifying factor; hypothetical protein complement(1977159..1978493) Nitrosomonas sp. AL212 10298548 YP_004295022.1 CDS NAL212_2023 NC_015222.1 1978738 1979073 R KEGG: cgr:CAGL0J01727g hypothetical protein; hypothetical protein complement(1978738..1979073) Nitrosomonas sp. AL212 10298549 YP_004295023.1 CDS NAL212_2024 NC_015222.1 1979467 1979778 D PFAM: Transport-associated; KEGG: net:Neut_0492 transport-associated; transport-associated protein 1979467..1979778 Nitrosomonas sp. AL212 10298550 YP_004295024.1 CDS NAL212_2025 NC_015222.1 1979854 1980234 R PFAM: Uncharacterised protein family YphA; KEGG: neu:NE1546 hypothetical protein; DoxX family protein complement(1979854..1980234) Nitrosomonas sp. AL212 10298551 YP_004295025.1 CDS NAL212_2026 NC_015222.1 1980265 1981131 R PFAM: Pirin, N-terminal; Pirin, C-terminal; KEGG: neu:NE1545 hypothetical protein; Pirin domain-containing protein complement(1980265..1981131) Nitrosomonas sp. AL212 10298552 YP_004295026.1 CDS NAL212_2027 NC_015222.1 1981257 1982180 D PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: neu:NE1544 transcription regulator LysR; LysR family transcriptional regulator 1981257..1982180 Nitrosomonas sp. AL212 10298553 YP_004295027.1 CDS NAL212_2028 NC_015222.1 1982471 1984072 D KEGG: neu:NE0782 putative periplasmic cell division protein (SufI); PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 2; bilirubin oxidase 1982471..1984072 Nitrosomonas sp. AL212 10298554 YP_004295028.1 CDS NAL212_2029 NC_015222.1 1984198 1985589 D PFAM: Sulfatase; KEGG: phe:Phep_2825 sulfatase; sulfatase 1984198..1985589 Nitrosomonas sp. AL212 10298555 YP_004295029.1 CDS NAL212_2030 NC_015222.1 1985799 1986170 R KEGG: kla:KLLA0C15719g hypothetical protein; hypothetical protein complement(1985799..1986170) Nitrosomonas sp. AL212 10298556 YP_004295030.1 CDS NAL212_2031 NC_015222.1 1986765 1986926 R KEGG: vpa:VP1728 glycine betaine transporter periplasmic subunit; hypothetical protein complement(1986765..1986926) Nitrosomonas sp. AL212 10298557 YP_004295031.1 CDS NAL212_2033 NC_015222.1 1987610 1988554 R PFAM: Radical SAM; KEGG: maq:Maqu_0146 radical SAM domain-containing protein; Radical SAM domain-containing protein complement(1987610..1988554) Nitrosomonas sp. AL212 10298559 YP_004295032.1 CDS NAL212_2034 NC_015222.1 1988557 1989603 R KEGG: hch:HCH_02988 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benz oquinol methylase; PFAM: Methyltransferase type 11; arsenite methyltransferase complement(1988557..1989603) Nitrosomonas sp. AL212 10298560 YP_004295033.1 CDS NAL212_2035 NC_015222.1 1989644 1990333 R PFAM: Glycosyl transferase, family 2; KEGG: glo:Glov_1990 glycosyl transferase family 2; family 2 glycosyl transferase complement(1989644..1990333) Nitrosomonas sp. AL212 10298561 YP_004295034.1 CDS NAL212_2036 NC_015222.1 1990326 1991015 R PFAM: Protein of unknown function DUF2064; KEGG: hch:HCH_04839 hypothetical protein; hypothetical protein complement(1990326..1991015) Nitrosomonas sp. AL212 10298562 YP_004295035.1 CDS NAL212_2037 NC_015222.1 1991360 1992343 D PFAM: Carbonic anhydrase, cadmium-binding; KEGG: dar:Daro_2933 histidine kinase, HAMP region: chemotaxis sensory transducer; carbonic anhydrase, cadmium-binding protein 1991360..1992343 Nitrosomonas sp. AL212 10298563 YP_004295036.1 CDS NAL212_2038 NC_015222.1 1992510 1992965 R PFAM: NUDIX hydrolase domain; KEGG: neu:NE2253 dATP pyrophosphohydrolase; NUDIX hydrolase complement(1992510..1992965) Nitrosomonas sp. AL212 10298564 YP_004295037.1 CDS NAL212_2039 NC_015222.1 1992977 1994764 R TIGRFAM: Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type; KEGG: nmu:Nmul_A0603 aspartyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; GAD domain; aspartyl-tRNA synthetase complement(1992977..1994764) Nitrosomonas sp. AL212 10298565 YP_004295038.1 CDS NAL212_2040 NC_015222.1 1994841 1995155 R TIGRFAM: Regulatory protein, FmdB, putative; PFAM: Regulatory protein, FmdB, putative; KEGG: neu:NE2251 type I antifreeze protein; SMART: Regulatory protein, FmdB, putative; FmdB family regulatory protein complement(1994841..1995155) Nitrosomonas sp. AL212 10298566 YP_004295039.1 CDS NAL212_2041 NC_015222.1 1995461 1998391 D KEGG: nmu:Nmul_A0875 aconitate hydratase; TIGRFAM: Aconitase/iron regulatory protein 2; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel; aconitate hydratase 1 1995461..1998391 Nitrosomonas sp. AL212 10298567 YP_004295040.1 CDS NAL212_2042 NC_015222.1 1998419 2000893 R KEGG: nhl:Nhal_1339 hypothetical protein; hypothetical protein complement(1998419..2000893) Nitrosomonas sp. AL212 10298568 YP_004295041.1 CDS NAL212_2043 NC_015222.1 2001362 2001658 R KEGG: rpi:Rpic_3180 hypothetical protein; hypothetical protein complement(2001362..2001658) Nitrosomonas sp. AL212 10298569 YP_004295042.1 CDS NAL212_2044 NC_015222.1 2001780 2001983 D PFAM: Prophage CP4-57 regulatory; KEGG: vcj:VCD_002586 transcriptional regulator; phage transcriptional regulator, AlpA 2001780..2001983 Nitrosomonas sp. AL212 10298570 YP_004295043.1 CDS NAL212_2045 NC_015222.1 2002169 2004799 D KEGG: ade:Adeh_1839 hypothetical protein; hypothetical protein 2002169..2004799 Nitrosomonas sp. AL212 10298571 YP_004295044.1 CDS NAL212_2046 NC_015222.1 2005136 2006443 D PFAM: Transposase, IS4-like; KEGG: dde:Dde_2849 ISPg7, transposase; transposase IS4 family protein 2005136..2006443 Nitrosomonas sp. AL212 10298572 YP_004295045.1 CDS NAL212_2047 NC_015222.1 2006679 2006972 R KEGG: nmu:Nmul_A2196 hypothetical protein; hypothetical protein complement(2006679..2006972) Nitrosomonas sp. AL212 10298573 YP_004295046.1 CDS NAL212_2048 NC_015222.1 2007655 2007816 R KEGG: ehi:EHI_095860 DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide; DnaD domain-containing protein complement(2007655..2007816) Nitrosomonas sp. AL212 10298574 YP_004295047.1 CDS NAL212_2049 NC_015222.1 2008273 2008617 D KEGG: ptm:GSPATT00013152001 hypothetical protein; hypothetical protein 2008273..2008617 Nitrosomonas sp. AL212 10298575 YP_004295048.1 CDS NAL212_2052 NC_015222.1 2010210 2011109 R PFAM: Integrase, catalytic core; KEGG: pde:Pden_3846 integrase catalytic subunit; integrase catalytic region complement(2010210..2011109) Nitrosomonas sp. AL212 10298578 YP_004295049.1 CDS NAL212_2053 NC_015222.1 2011109 2011429 R PFAM: Transposase IS3/IS911family; KEGG: alv:Alvin_1732 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein complement(2011109..2011429) Nitrosomonas sp. AL212 10298579 YP_004295050.1 CDS NAL212_2054 NC_015222.1 2011844 2012665 D KEGG: atu:Atu4861 IS21 family transposase; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; IstB domain-containing protein ATP-binding protein 2011844..2012665 Nitrosomonas sp. AL212 10298580 YP_004295051.1 CDS NAL212_2055 NC_015222.1 2012886 2013212 R KEGG: zpr:ZPR_2153 putative outer membrane protein, probably involved in nutrient binding; hypothetical protein complement(2012886..2013212) Nitrosomonas sp. AL212 10298581 YP_004295052.1 CDS NAL212_2056 NC_015222.1 2013426 2014712 R PFAM: Integrase, catalytic core, phage; KEGG: apb:SAR116_2486 phage integrase family protein; integrase family protein complement(2013426..2014712) Nitrosomonas sp. AL212 10298582 YP_004295053.1 CDS NAL212_2057 NC_015222.1 2014868 2016430 R TIGRFAM: GMP synthase, C-terminal; GMP synthase, N-terminal; KEGG: nmu:Nmul_A1199 GMP synthase; PFAM: GMP synthase, C-terminal; Glutamine amidotransferase class-I, C-terminal; NAD/GMP synthase; GMP synthase large subunit complement(2014868..2016430) Nitrosomonas sp. AL212 10298583 YP_004295054.1 CDS NAL212_2058 NC_015222.1 2016444 2017907 R SMART: Cystathionine beta-synthase, core; TIGRFAM: IMP dehydrogenase; KEGG: nmu:Nmul_A1200 inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; Cystathionine beta-synthase, core; inosine-5'-monophosphate dehydrogenase complement(2016444..2017907) Nitrosomonas sp. AL212 10298584 YP_004295055.1 CDS NAL212_2059 NC_015222.1 2018195 2018632 D KEGG: slt:Slit_1463 hypothetical protein; hypothetical protein 2018195..2018632 Nitrosomonas sp. AL212 10298585 YP_004295056.1 CDS NAL212_2060 NC_015222.1 2018651 2019973 D KEGG: aeh:Mlg_1232 hypothetical protein; hypothetical protein 2018651..2019973 Nitrosomonas sp. AL212 10298586 YP_004295057.1 CDS NAL212_2061 NC_015222.1 2020164 2021270 R PFAM: WD40-like Beta Propeller; KEGG: net:Neut_1380 WD40 domain-containing protein; WD40-like beta Propeller containing protein complement(2020164..2021270) Nitrosomonas sp. AL212 10298587 YP_004295058.1 CDS NAL212_2062 NC_015222.1 2021554 2022924 D KEGG: nhl:Nhal_4025 hypothetical protein; hypothetical protein 2021554..2022924 Nitrosomonas sp. AL212 10298588 YP_004295059.1 CDS NAL212_2063 NC_015222.1 2022918 2025722 D KEGG: nhl:Nhal_4024 helicase domain protein; PFAM: Helicase, C-terminal; SNF2-related; SMART: Helicase, C-terminal; DEAD-like helicase, N-terminal; helicase domain-containing protein 2022918..2025722 Nitrosomonas sp. AL212 10298589 YP_004295060.1 CDS NAL212_2064 NC_015222.1 2026154 2029549 D KEGG: net:Neut_1379 peptidase M28; PFAM: Peptidase M28; PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF; peptidase M28 2026154..2029549 Nitrosomonas sp. AL212 10298590 YP_004295061.1 CDS NAL212_2066 NC_015222.1 2029888 2032293 D KEGG: spc:Sputcn32_3987 hypothetical protein; hypothetical protein 2029888..2032293 Nitrosomonas sp. AL212 10298592 YP_004295062.1 CDS NAL212_2067 NC_015222.1 2032599 2033255 D KEGG: bge:BC1002_4939 peroxidase; PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; Peroxiredoxin, C-terminal; peroxidase 2032599..2033255 Nitrosomonas sp. AL212 10298593 YP_004295063.1 CDS NAL212_2068 NC_015222.1 2033541 2033870 D KEGG: cja:CJA_3561 putative lipoprotein; putative lipoprotein 2033541..2033870 Nitrosomonas sp. AL212 10298594 YP_004295064.1 CDS NAL212_2069 NC_015222.1 2033999 2034478 R KEGG: slo:Shew_3054 hypothetical protein; hypothetical protein complement(2033999..2034478) Nitrosomonas sp. AL212 10298595 YP_004295065.1 CDS NAL212_2070 NC_015222.1 2034711 2036339 R KEGG: pde:Pden_0560 hemolysin-type calcium-binding region; hemolysin-type calcium-binding region complement(2034711..2036339) Nitrosomonas sp. AL212 10298596 YP_004295066.1 CDS NAL212_2071 NC_015222.1 2036351 2037535 R KEGG: pnu:Pnuc_1664 GCN5-related N-acetyltransferase; hypothetical protein complement(2036351..2037535) Nitrosomonas sp. AL212 10298597 YP_004295067.1 CDS NAL212_2072 NC_015222.1 2037812 2037928 D hypothetical protein 2037812..2037928 Nitrosomonas sp. AL212 10298598 YP_004295068.1 CDS NAL212_2073 NC_015222.1 2038065 2039216 D TIGRFAM: Carbamoyl-phosphate synthase, small subunit; KEGG: nmu:Nmul_A0478 carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase, small subunit, N-terminal; Glutamine amidotransferase class-I, C-terminal; carbamoyl-phosphate synthase small subunit 2038065..2039216 Nitrosomonas sp. AL212 10298599 YP_004295069.1 CDS NAL212_2074 NC_015222.1 2039244 2042447 D SMART: Methylglyoxal synthase-like domain; TIGRFAM: Carbamoyl-phosphate synthase, large subunit; KEGG: nmu:Nmul_A0479 carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthetase, large subunit, oligomerisation; Methylglyoxal synthase-like domain; Carbamoyl-phosphate synthase, large subunit, N-terminal; carbamoyl-phosphate synthase large subunit 2039244..2042447 Nitrosomonas sp. AL212 10298600 YP_004295070.1 CDS NAL212_2075 NC_015222.1 2042510 2042986 D KEGG: neu:NE1660 transcription elongation factor GreA/GreB; TIGRFAM: Transcription elongation factor GreA; PFAM: Transcription elongation factor, GreA/GreB, N-terminal; Transcription elongation factor, GreA/GreB, C-terminal; transcription elongation factor GreA 2042510..2042986 Nitrosomonas sp. AL212 10298601 YP_004295071.1 CDS NAL212_2076 NC_015222.1 2043002 2043355 R PFAM: RNA-binding, CRM domain; KEGG: hse:Hsero_1381 RNA-binding ribosomal protein; hypothetical protein complement(2043002..2043355) Nitrosomonas sp. AL212 10298602 YP_004295072.1 CDS NAL212_2077 NC_015222.1 2043386 2044003 D PFAM: Ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: nmu:Nmul_A0482 ribosomal RNA methyltransferase RrmJ/FtsJ; ribosomal RNA methyltransferase RrmJ/FtsJ 2043386..2044003 Nitrosomonas sp. AL212 10298603 YP_004295073.1 CDS NAL212_2078 NC_015222.1 2044175 2046091 D SMART: ATPase, AAA+ type, core; TIGRFAM: Peptidase M41, FtsH; KEGG: net:Neut_0998 ATP-dependent metalloprotease FtsH; PFAM: Peptidase M41; ATPase, AAA-type, core; Peptidase M41, FtsH extracellular; ATP-dependent metalloprotease FtsH 2044175..2046091 Nitrosomonas sp. AL212 10298604 YP_004295074.1 CDS NAL212_2079 NC_015222.1 2046173 2047006 D PFAM: Pterin-binding; manually curated; KEGG: nmu:Nmul_A0484 dihydropteroate synthase; TIGRFAM: Dihydropteroate synthase; dihydropteroate synthase 2046173..2047006 Nitrosomonas sp. AL212 10298605 YP_004295075.1 CDS NAL212_2080 NC_015222.1 2047063 2048421 D TIGRFAM: Phosphoglucosamine mutase; KEGG: nmu:Nmul_A0485 phosphoglucosamine mutase; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal; phosphoglucosamine mutase 2047063..2048421 Nitrosomonas sp. AL212 10298606 YP_004295076.1 CDS NAL212_2081 NC_015222.1 2048403 2048591 R hypothetical protein complement(2048403..2048591) Nitrosomonas sp. AL212 10298607 YP_004295077.1 CDS NAL212_2082 NC_015222.1 2048609 2049607 D TIGRFAM: Phosphate binding protein; KEGG: nmu:Nmul_A0486 phosphate binding protein; phosphate binding protein 2048609..2049607 Nitrosomonas sp. AL212 10298608 YP_004295078.1 CDS NAL212_2083 NC_015222.1 2049760 2051157 D TIGRFAM: Uroporphyrin-III C-methyltransferase, C-terminal; Sirohaem synthase, N-terminal; KEGG: nmu:Nmul_A2313 uroporphyrin-III C-methyltransferase; PFAM: Tetrapyrrole methylase; Sirohaem synthase, dimerisation domain; uroporphyrin-III C-methyltransferase 2049760..2051157 Nitrosomonas sp. AL212 10298609 YP_004295079.1 CDS NAL212_2084 NC_015222.1 2051216 2052085 R TIGRFAM: Nicotinate-nucleotide pyrophosphorylase; KEGG: nmu:Nmul_A1543 nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; Quinolinate phosphoribosyl transferase, N-terminal; nicotinate-nucleotide pyrophosphorylase complement(2051216..2052085) Nitrosomonas sp. AL212 10298610 YP_004295080.1 CDS NAL212_2085 NC_015222.1 2052257 2052454 D PFAM: Protein of unknown function DUF2292; KEGG: mei:Msip34_2148 hypothetical protein; hypothetical protein 2052257..2052454 Nitrosomonas sp. AL212 10298611 YP_004295081.1 CDS NAL212_2086 NC_015222.1 2052608 2054317 D KEGG: nmu:Nmul_A0508 hypothetical protein; hypothetical protein 2052608..2054317 Nitrosomonas sp. AL212 10298612 YP_004295082.1 CDS NAL212_2087 NC_015222.1 2054349 2055347 D KEGG: nmu:Nmul_A0507 thiosulphate-binding protein; TIGRFAM: Thiosulphate-binding protein; PFAM: Bacterial extracellular solute-binding, family 1; sulfate ABC transporter periplasmic sulfate-binding protein 2054349..2055347 Nitrosomonas sp. AL212 10298613 YP_004295083.1 CDS NAL212_2088 NC_015222.1 2055401 2056219 D KEGG: neu:NE0579 domain of unknown function 2; PFAM: Diguanylate phosphodiesterase, EAL domain; SMART: Diguanylate phosphodiesterase, EAL domain; diguanylate phosphodiesterase 2055401..2056219 Nitrosomonas sp. AL212 10298614 YP_004295084.1 CDS NAL212_2089 NC_015222.1 2056278 2057111 D KEGG: nmu:Nmul_A0505 sulfate ABC transporter, permease protein CysT; TIGRFAM: Sulphate ABC transporter, permease protein CysT; Sulphate ABC transporter permease protein 2; PFAM: Binding-protein-dependent transport systems inner membrane component; sulfate ABC transporter inner membrane subunit CysT 2056278..2057111 Nitrosomonas sp. AL212 10298615 YP_004295085.1 CDS NAL212_2090 NC_015222.1 2057078 2058001 D KEGG: nmu:Nmul_A0504 sulfate ABC transporter, permease protein CysW; TIGRFAM: Sulphate ABC transporter, permease protein CysW; Sulphate ABC transporter permease protein 2; PFAM: Binding-protein-dependent transport systems inner membrane component; sulfate ABC transporter, inner membrane subunit CysW 2057078..2058001 Nitrosomonas sp. AL212 10298616 YP_004295086.1 CDS NAL212_2091 NC_015222.1 2057998 2059098 D SMART: ATPase, AAA+ type, core; TIGRFAM: Sulphate transport system permease protein 1; KEGG: nmu:Nmul_A0503 sulphate transport system permease protein 1; PFAM: ABC transporter-like; sulfate ABC transporter ATPase 2057998..2059098 Nitrosomonas sp. AL212 10298617 YP_004295087.1 CDS NAL212_2092 NC_015222.1 2059165 2060025 D PFAM: Diguanylate phosphodiesterase, EAL domain; KEGG: mca:MCA0898 hypothetical protein; EAL domain-containing protein 2059165..2060025 Nitrosomonas sp. AL212 10298618 YP_004295088.1 CDS NAL212_2093 NC_015222.1 2060109 2061044 D PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: neu:NE0572 transcriptional regulator CysB-like protein; LysR family transcriptional regulator 2060109..2061044 Nitrosomonas sp. AL212 10298619 YP_004295089.1 CDS NAL212_2094 NC_015222.1 2061235 2062728 D KEGG: nmu:Nmul_A1542 ferredoxin-dependent glutamate synthase; PFAM: Glutamate synthase, central-C; glutamate synthase 2061235..2062728 Nitrosomonas sp. AL212 10298620 YP_004295090.1 CDS NAL212_2095 NC_015222.1 2062931 2065606 D TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; KEGG: gme:Gmet_3085 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; diguanylate cyclase/phosphodiesterase 2062931..2065606 Nitrosomonas sp. AL212 10298621 YP_004295091.1 CDS NAL212_2096 NC_015222.1 2065673 2068255 D TIGRFAM: Chaperonin ClpB; PFAM: ATPase, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; KEGG: nmu:Nmul_A1541 ATPase with chaperone activity; SMART: ATPase, AAA+ type, core; ATP-dependent chaperone ClpB 2065673..2068255 Nitrosomonas sp. AL212 10298622 YP_004295092.1 CDS NAL212_2097 NC_015222.1 2068396 2069283 D KEGG: nmu:Nmul_A1540 dihydrodipicolinate synthase; TIGRFAM: Dihydrodipicolinate synthase subfamily; PFAM: Dihydrodipicolinate synthetase; dihydrodipicolinate synthase 2068396..2069283 Nitrosomonas sp. AL212 10298623 YP_004295093.1 CDS NAL212_2098 NC_015222.1 2069294 2070436 D manually curated; KEGG: neu:NE2404 putative transmembrane protein; putative transmembrane protein 2069294..2070436 Nitrosomonas sp. AL212 10298624 YP_004295094.1 CDS NAL212_2099 NC_015222.1 2070704 2071177 D KEGG: net:Neut_2150 hypothetical protein; hypothetical protein 2070704..2071177 Nitrosomonas sp. AL212 10298625 YP_004295095.1 CDS NAL212_2100 NC_015222.1 2071203 2072540 R KEGG: nmu:Nmul_A1282 type I secretion outer membrane protein, TolC; TIGRFAM: Type I secretion outer membrane protein, TolC; PFAM: Outer membrane efflux protein; TolC family type I secretion outer membrane protein complement(2071203..2072540) Nitrosomonas sp. AL212 10298626 YP_004295096.1 CDS NAL212_2101 NC_015222.1 2072546 2073901 R KEGG: nmu:Nmul_A1281 type I secretion membrane fusion protein, HlyD; TIGRFAM: Type I secretion membrane fusion protein, HlyD; PFAM: Secretion protein HlyD; HlyD family type I secretion membrane fusion protein complement(2072546..2073901) Nitrosomonas sp. AL212 10298627 YP_004295097.1 CDS NAL212_2102 NC_015222.1 2073966 2075750 R SMART: ATPase, AAA+ type, core; TIGRFAM: ATPase, type I secretion system, PrtD; KEGG: nmu:Nmul_A1280 type I secretion system ATPase, PrtD; PFAM: ABC transporter-like; ABC transporter, transmembrane domain; type I secretion system ATPase complement(2073966..2075750) Nitrosomonas sp. AL212 10298628 YP_004295098.1 CDS NAL212_2103 NC_015222.1 2075825 2076709 R PFAM: NAD-dependent epimerase/dehydratase; KEGG: axy:AXYL_06298 NAD dependent epimerase/dehydratase family protein 7; NAD-dependent epimerase/dehydratase complement(2075825..2076709) Nitrosomonas sp. AL212 10298629 YP_004295099.1 CDS NAL212_2104 NC_015222.1 2076706 2077617 R PFAM: Glycosyl transferase, family 2; KEGG: nmu:Nmul_A2407 glycosyl transferase family protein; family 2 glycosyl transferase complement(2076706..2077617) Nitrosomonas sp. AL212 10298630 YP_004295100.1 CDS NAL212_2106 NC_015222.1 2078658 2079818 R KEGG: vap:Vapar_1531 two component transcriptional regulator, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; two component transcriptional regulator, LuxR family complement(2078658..2079818) Nitrosomonas sp. AL212 10298632 YP_004295101.1 CDS NAL212_2107 NC_015222.1 2080401 2080655 D PFAM: Modulator of Rho-dependent transcription termination; KEGG: neu:NE0186 hypothetical protein; Modulator of Rho-dependent transcription termination 2080401..2080655 Nitrosomonas sp. AL212 10298633 YP_004295102.1 CDS NAL212_2108 NC_015222.1 2080727 2081800 D TIGRFAM: A/G-specific adenine glycosylase MutY, bacterial form; PFAM: HhH-GPD domain; Helix-hairpin-helix motif; KEGG: neu:NE0056 HhH-GPD; SMART: HhH-GPD domain; Helix-hairpin-helix DNA-binding motif, class 1; Endonuclease III-like, iron-sulphur cluster loop motif; A/G-specific adenine glycosylase 2080727..2081800 Nitrosomonas sp. AL212 10298634 YP_004295103.1 CDS NAL212_2109 NC_015222.1 2081790 2082386 D KEGG: nmu:Nmul_A0079 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 2081790..2082386 Nitrosomonas sp. AL212 10298635 YP_004295104.1 CDS NAL212_2110 NC_015222.1 2082441 2083055 R KEGG: nmu:Nmul_A0080 aromatic acid decarboxylase; TIGRFAM: Phenylacrylic acid decarboxylase; PFAM: Flavoprotein; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase complement(2082441..2083055) Nitrosomonas sp. AL212 10298636 YP_004295105.1 CDS NAL212_2111 NC_015222.1 2083116 2084078 R PFAM: Signal transduction serine kinase/phosphorylase, HPr(Ser) kinase, C-terminal; Signal transduction serine kinase/phosphorylase, HPr(Ser) kinase, N-terminal; KEGG: nmu:Nmul_A0082 HPr kinase/phosphorylase; HPr kinase complement(2083116..2084078) Nitrosomonas sp. AL212 10298637 YP_004295106.1 CDS NAL212_2112 NC_015222.1 2084065 2084547 R PFAM: Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; KEGG: neu:NE0060 phosphotransferase system mannitol/fructose-specific IIA domain-containing protein; putative PTS IIA-like nitrogen-regulatory protein PtsN complement(2084065..2084547) Nitrosomonas sp. AL212 10298638 YP_004295107.1 CDS NAL212_2113 NC_015222.1 2084655 2084978 R KEGG: neu:NE0061 sigma 54 modulation protein / S30EA ribosomal protein; TIGRFAM: Ribosomal protein S30Ae/sigma 54 modulation protein; PFAM: Ribosomal protein S30Ae/sigma 54 modulation protein; sigma 54 modulation protein/30S ribosomal protein S30EA complement(2084655..2084978) Nitrosomonas sp. AL212 10298639 YP_004295108.1 CDS NAL212_2114 NC_015222.1 2084997 2086445 R KEGG: nmu:Nmul_A0084 sigma-54 (RpoN); TIGRFAM: RNA polymerase sigma factor 54; PFAM: RNA polymerase sigma factor 54, DNA-binding; RNA polymerase sigma factor 54; RNA polymerase sigma factor 54, core-binding; RNA polymerase sigma 54 subunit RpoN complement(2084997..2086445) Nitrosomonas sp. AL212 10298640 YP_004295109.1 CDS NAL212_2115 NC_015222.1 2086500 2087222 R PFAM: ABC transporter-like; KEGG: net:Neut_2302 ABC transporter-related protein; SMART: ATPase, AAA+ type, core; sulfate-transporting ATPase complement(2086500..2087222) Nitrosomonas sp. AL212 10298641 YP_004295110.1 CDS NAL212_2116 NC_015222.1 2087265 2087795 R KEGG: net:Neut_2301 OstA family protein; TIGRFAM: Lipopolysccharide assembly, LptA; PFAM: Organic solvent tolerance-like, N-terminal; lipopolysaccharide transport periplasmic protein LptA complement(2087265..2087795) Nitrosomonas sp. AL212 10298642 YP_004295111.1 CDS NAL212_2117 NC_015222.1 2087807 2088370 R PFAM: Lipopolysccharide assembly, LptC-related; KEGG: net:Neut_2300 hypothetical protein; hypothetical protein complement(2087807..2088370) Nitrosomonas sp. AL212 10298643 YP_004295112.1 CDS NAL212_2118 NC_015222.1 2088591 2089694 D TIGRFAM: Quinolinate synthetase A; KEGG: net:Neut_2299 quinolinate synthetase; PFAM: Quinolinate synthetase A; quinolinate synthetase complex subunit A 2088591..2089694 Nitrosomonas sp. AL212 10298644 YP_004295113.1 CDS NAL212_2119 NC_015222.1 2089767 2090939 D SMART: Phospholipase D/Transphosphatidylase; KEGG: neu:NE0068 phospholipase D/transphosphatidylase; phospholipase D/Transphosphatidylase 2089767..2090939 Nitrosomonas sp. AL212 10298645 YP_004295114.1 CDS NAL212_2120 NC_015222.1 2090993 2092033 D KEGG: nmu:Nmul_A0607 SUA5/YciO/YrdC/YwlC; TIGRFAM: Sua5/YciO/YrdC/YwlC; PFAM: Sua5/YciO/YrdC, N-terminal; SUA5; Sua5/YciO/YrdC/YwlC family protein 2090993..2092033 Nitrosomonas sp. AL212 10298646 YP_004295115.1 CDS NAL212_2121 NC_015222.1 2092048 2092818 D KEGG: nmu:Nmul_A0608 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase; HAD-superfamily hydrolase 2092048..2092818 Nitrosomonas sp. AL212 10298647 YP_004295116.1 CDS NAL212_2122 NC_015222.1 2093016 2093381 D KEGG: neu:NE2461 hypothetical protein; hypothetical protein 2093016..2093381 Nitrosomonas sp. AL212 10298648 YP_004295117.1 CDS NAL212_2123 NC_015222.1 2093446 2094513 R KEGG: nmu:Nmul_A0497 peptidase M23B; PFAM: Peptidase M23; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; peptidase M23 complement(2093446..2094513) Nitrosomonas sp. AL212 10298649 YP_004295118.1 CDS NAL212_2124 NC_015222.1 2094532 2095194 R PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; TIGRFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; HAMAP: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: net:Neut_2323 protein-L-isoaspartate O-methyltransferase; protein-L-isoaspartate O-methyltransferase complement(2094532..2095194) Nitrosomonas sp. AL212 10298650 YP_004295119.1 CDS NAL212_2125 NC_015222.1 2095220 2095984 R TIGRFAM: Survival protein SurE-like phosphatase/nucleotidase; KEGG: nmu:Nmul_A0495 stationary phase survival protein SurE; PFAM: Survival protein SurE-like phosphatase/nucleotidase; stationary-phase survival protein SurE complement(2095220..2095984) Nitrosomonas sp. AL212 10298651 YP_004295120.1 CDS NAL212_2126 NC_015222.1 2096216 2096593 R KEGG: reu:Reut_A1282 MerR family transcriptional regulator; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR; regulatory protein MerR complement(2096216..2096593) Nitrosomonas sp. AL212 10298653 YP_004295121.1 CDS NAL212_2127 NC_015222.1 2096583 2096879 R TIGRFAM: Integration host factor, alpha subunit; PFAM: Histone-like bacterial DNA-binding protein; KEGG: nmu:Nmul_A0493 integration host factor subunit alpha; SMART: Histone-like bacterial DNA-binding protein; integration host factor subunit alpha complement(2096583..2096879) Nitrosomonas sp. AL212 10298654 YP_004295122.1 CDS NAL212_2128 NC_015222.1 2097026 2099398 R TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; KEGG: nmu:Nmul_A0492 phenylalanyl-tRNA synthetase subunit beta; phenylalanyl-tRNA synthetase subunit beta complement(2097026..2099398) Nitrosomonas sp. AL212 10298655 YP_004295123.1 CDS NAL212_2129 NC_015222.1 2099442 2100461 R KEGG: nmu:Nmul_A0491 phenylalanyl-tRNA synthetase subunit alpha; TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, alpha subunit; PFAM: Phenylalanyl-tRNA synthetase; Phenylalanyl-tRNA synthetase, class II, N-terminal; phenylalanyl-tRNA synthetase subunit alpha complement(2099442..2100461) Nitrosomonas sp. AL212 10298656 YP_004295124.1 CDS NAL212_2130 NC_015222.1 2100567 2100926 R KEGG: nmu:Nmul_A0490 50S ribosomal protein L20; TIGRFAM: Ribosomal protein L20; PFAM: Ribosomal protein L20; 50S ribosomal protein L20 complement(2100567..2100926) Nitrosomonas sp. AL212 10298657 YP_004295125.1 CDS NAL212_2131 NC_015222.1 2100940 2101137 R PFAM: Ribosomal protein L35; manually curated; TIGRFAM: Ribosomal protein L35, non-mitochondrial; KEGG: eba:ebC8 50S ribosomal protein L35; HAMAP: Ribosomal protein L35, non-mitochondrial; 50S ribosomal protein L35 complement(2100940..2101137) Nitrosomonas sp. AL212 10298658 YP_004295126.1 CDS NAL212_2132 NC_015222.1 2101248 2101802 R TIGRFAM: Translation initiation factor 3; HAMAP: Translation initiation factor 3; KEGG: nmu:Nmul_A0488 translation initiation factor IF-3; PFAM: Translation initiation factor 3, C-terminal; Translation initiation factor 3, N-terminal; Translation initiation factor IF-3 complement(2101248..2101802) Nitrosomonas sp. AL212 10298659 YP_004295127.1 CDS NAL212_2133 NC_015222.1 2101854 2103761 R TIGRFAM: Threonyl-tRNA synthetase, class IIa; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Threonyl/alanyl tRNA synthetase, SAD; TGS; Anticodon-binding; KEGG: nmu:Nmul_A0487 threonyl-tRNA synthetase; SMART: Threonyl/alanyl tRNA synthetase, SAD; threonyl-tRNA synthetase complement(2101854..2103761) Nitrosomonas sp. AL212 10298660 YP_004295128.1 CDS NAL212_2134 NC_015222.1 2103847 2104602 R KEGG: nmu:Nmul_A2658 hypothetical protein; hypothetical protein complement(2103847..2104602) Nitrosomonas sp. AL212 10298661 YP_004295129.1 CDS NAL212_2135 NC_015222.1 2104735 2105424 R PFAM: NapC/NirT cytochrome c, N-terminal; KEGG: neu:NE2336 putative tetraheme C-cytochrome; NapC/NirT cytochrome c domain-containing protein complement(2104735..2105424) Nitrosomonas sp. AL212 10298662 YP_004295130.1 CDS NAL212_2136 NC_015222.1 2105424 2106146 R KEGG: neu:NE2337 cytochrome c-554 precursor; cytochrome c-554 complement(2105424..2106146) Nitrosomonas sp. AL212 10298663 YP_004295131.1 CDS NAL212_2137 NC_015222.1 2106272 2107219 R KEGG: nmu:Nmul_A2661 hypothetical protein; hypothetical protein complement(2106272..2107219) Nitrosomonas sp. AL212 10298664 YP_004295132.1 CDS NAL212_2138 NC_015222.1 2107300 2109012 R KEGG: neu:NE2339 hydroxylamine oxidoreductase; hydroxylamine oxidase complement(2107300..2109012) Nitrosomonas sp. AL212 10298665 YP_004295133.1 CDS NAL212_2139 NC_015222.1 2109219 2113430 R TIGRFAM: DNA-directed RNA polymerase, subunit beta-prime; PFAM: RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 5; RNA polymerase Rpb1, domain 3; RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 4; KEGG: nmu:Nmul_A0760 DNA-directed RNA polymerase subunit beta'; SMART: RNA polymerase, N-terminal; DNA-directed RNA polymerase subunit beta' complement(2109219..2113430) Nitrosomonas sp. AL212 10298666 YP_004295134.1 CDS NAL212_2140 NC_015222.1 2113531 2117604 R KEGG: nmu:Nmul_A0759 DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit, bacterial-type; PFAM: DNA-directed RNA polymerase, subunit 2, domain 6; RNA polymerase Rpb2, domain 2; RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 7; RNA polymerase, beta subunit, protrusion; DNA-directed RNA polymerase, beta subunit, external 1 domain; DNA-directed RNA polymerase subunit beta complement(2113531..2117604) Nitrosomonas sp. AL212 10298667 YP_004295135.1 CDS NAL212_2141 NC_015222.1 2117758 2118138 R KEGG: nmu:Nmul_A0758 50S ribosomal protein L7/L12; TIGRFAM: Ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12, C-terminal; 50S ribosomal protein L7/L12 complement(2117758..2118138) Nitrosomonas sp. AL212 10298668 YP_004295136.1 CDS NAL212_2142 NC_015222.1 2118199 2118714 R KEGG: nmu:Nmul_A0757 50S ribosomal protein L10; HAMAP: Ribosomal protein L10; PFAM: Ribosomal protein L10/acidic P0; 50S ribosomal protein L10 complement(2118199..2118714) Nitrosomonas sp. AL212 10298669 YP_004295137.1 CDS NAL212_2143 NC_015222.1 2119022 2119717 R KEGG: nmu:Nmul_A0756 50S ribosomal protein L1; TIGRFAM: Ribosomal protein L1, bacterial-type; PFAM: Ribosomal protein L1; 50S ribosomal protein L1 complement(2119022..2119717) Nitrosomonas sp. AL212 10298670 YP_004295138.1 CDS NAL212_2144 NC_015222.1 2119719 2120150 R TIGRFAM: Ribosomal protein L11, bacterial-type; PFAM: Ribosomal protein L11, N-terminal domain; Ribosomal protein L11, C-terminal domain; KEGG: net:Neut_1799 50S ribosomal protein L11; SMART: Ribosomal protein L11; 50S ribosomal protein L11 complement(2119719..2120150) Nitrosomonas sp. AL212 10298671 YP_004295139.1 CDS NAL212_2145 NC_015222.1 2120266 2120799 R TIGRFAM: Transcription antitermination protein, NusG; PFAM: Transcription antitermination protein, NusG, N-terminal; KEGG: nmu:Nmul_A0754 transcription antitermination protein NusG; SMART: Transcription antitermination protein, NusG, N-terminal; KOW; NusG antitermination factor complement(2120266..2120799) Nitrosomonas sp. AL212 10298672 YP_004295140.1 CDS NAL212_2146 NC_015222.1 2120817 2121161 R KEGG: nmu:Nmul_A0753 preprotein translocase subunit SecE; TIGRFAM: SecE subunit of protein translocation complex; PFAM: Protein SecE/Sec61-gamma protein; Preprotein translocase subunit SecE complement(2120817..2121161) Nitrosomonas sp. AL212 10298673 YP_004295141.1 CDS NAL212_2147 NC_015222.1 2121428 2122618 R KEGG: neu:NE2052 elongation factor Tu; TIGRFAM: Translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFTu/EF1A, C-terminal; translation elongation factor Tu complement(2121428..2122618) Nitrosomonas sp. AL212 10298675 YP_004295142.1 CDS NAL212_2148 NC_015222.1 2123184 2124161 R PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: net:Neut_1443 binding-protein-dependent transport systems inner membrane component; ABC transporter permease complement(2123184..2124161) Nitrosomonas sp. AL212 10298679 YP_004295143.1 CDS NAL212_2149 NC_015222.1 2124183 2126369 R PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: nmu:Nmul_A2334 extracellular solute-binding protein; ABC transporter substrate-binding protein complement(2124183..2126369) Nitrosomonas sp. AL212 10298680 YP_004295144.1 CDS NAL212_2150 NC_015222.1 2126506 2127291 D KEGG: neu:NE2205 short-chain dehydrogenase/reductase; PFAM: Short-chain dehydrogenase/reductase SDR; enoyl-ACP reductase 2126506..2127291 Nitrosomonas sp. AL212 10298681 YP_004295145.1 CDS NAL212_2151 NC_015222.1 2127298 2129181 R PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; SurA N-terminal; KEGG: net:Neut_0662 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase complement(2127298..2129181) Nitrosomonas sp. AL212 10298682 YP_004295146.1 CDS NAL212_2152 NC_015222.1 2129439 2129711 R KEGG: net:Neut_0661 histone family protein DNA-binding protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; histone family protein DNA-binding protein complement(2129439..2129711) Nitrosomonas sp. AL212 10298685 YP_004295147.1 CDS NAL212_2153 NC_015222.1 2129947 2130939 R PFAM: Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal; Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal; KEGG: nmu:Nmul_A1126 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain-containing protein complement(2129947..2130939) Nitrosomonas sp. AL212 10298686 YP_004295148.1 CDS NAL212_2154 NC_015222.1 2130936 2131418 R PFAM: Protein of unknown function DUF1058; KEGG: nmu:Nmul_A1125 hypothetical protein; hypothetical protein complement(2130936..2131418) Nitrosomonas sp. AL212 10298687 YP_004295149.1 CDS NAL212_2155 NC_015222.1 2131456 2131893 R KEGG: net:Neut_0658 preprotein translocase subunit SecB; TIGRFAM: Bacterial protein export chaperone SecB; PFAM: Bacterial protein export chaperone SecB; protein-export protein SecB complement(2131456..2131893) Nitrosomonas sp. AL212 10298688 YP_004295150.1 CDS NAL212_2156 NC_015222.1 2131958 2132215 R KEGG: net:Neut_0657 glutaredoxin 3; TIGRFAM: Glutaredoxin, GrxC; PFAM: Glutaredoxin; glutaredoxin 3 complement(2131958..2132215) Nitrosomonas sp. AL212 10298689 YP_004295151.1 CDS NAL212_2157 NC_015222.1 2132224 2132658 R KEGG: neu:NE2212 putative transmembrane protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; rhodanese-like protein complement(2132224..2132658) Nitrosomonas sp. AL212 10298690 YP_004295152.1 CDS NAL212_2158 NC_015222.1 2132861 2134111 R PFAM: Cysteine-rich domain; KEGG: nmu:Nmul_A0175 glycolate oxidase iron-sulfur subunit; hypothetical protein complement(2132861..2134111) Nitrosomonas sp. AL212 10298691 YP_004295153.1 CDS NAL212_2159 NC_015222.1 2134112 2135188 R PFAM: FAD linked oxidase, N-terminal; KEGG: nmu:Nmul_A0174 glycolate oxidase FAD binding subunit; FAD linked oxidase domain-containing protein complement(2134112..2135188) Nitrosomonas sp. AL212 10298692 YP_004295154.1 CDS NAL212_2160 NC_015222.1 2135194 2136648 R KEGG: nmu:Nmul_A0173 D-lactate dehydrogenase (cytochrome); PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal; D-lactate dehydrogenase complement(2135194..2136648) Nitrosomonas sp. AL212 10298693 YP_004295155.1 CDS NAL212_2161 NC_015222.1 2136657 2137562 R TIGRFAM: 2-hydroxy-3-oxopropionate reductase; KEGG: nmu:Nmul_A0172 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; 2-hydroxy-3-oxopropionate reductase complement(2136657..2137562) Nitrosomonas sp. AL212 10298694 YP_004295156.1 CDS NAL212_2166 NC_015222.1 2140765 2141745 R PFAM: Transposase, IS4-like; KEGG: atu:Atu4436 IS5 family transposase; transposase IS4 family protein complement(2140765..2141745) Nitrosomonas sp. AL212 10298699 YP_004295157.1 CDS NAL212_2167 NC_015222.1 2142116 2142550 R PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: nmu:Nmul_A0440 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase complement(2142116..2142550) Nitrosomonas sp. AL212 10298700 YP_004295158.1 CDS NAL212_2168 NC_015222.1 2142567 2143871 R SMART: Adenylosuccinate synthetase; TIGRFAM: Adenylosuccinate synthetase; KEGG: nmu:Nmul_A0441 adenylosuccinate synthetase; PFAM: Adenylosuccinate synthetase; adenylosuccinate synthetase complement(2142567..2143871) Nitrosomonas sp. AL212 10298701 YP_004295159.1 CDS NAL212_2169 NC_015222.1 2143913 2145064 R TIGRFAM: Histidyl-tRNA synthetase, class IIa, putative; KEGG: net:Neut_0966 ATP phosphoribosyltransferase regulatory subunit; histidyl-tRNA synthetase 2 complement(2143913..2145064) Nitrosomonas sp. AL212 10298702 YP_004295160.1 CDS NAL212_2170 NC_015222.1 2145105 2145290 R PFAM: Protein of unknown function DUF2065; KEGG: nmu:Nmul_A0443 hypothetical protein; hypothetical protein complement(2145105..2145290) Nitrosomonas sp. AL212 10298703 YP_004295161.1 CDS NAL212_2171 NC_015222.1 2145526 2146401 R TIGRFAM: HflC; PFAM: Band 7 protein; KEGG: neu:NE1284 band 7 protein; SMART: Band 7 protein; HflC protein complement(2145526..2146401) Nitrosomonas sp. AL212 10298704 YP_004295162.1 CDS NAL212_2172 NC_015222.1 2146402 2147580 R TIGRFAM: HflK; PFAM: Band 7 protein; Protein HflK, N-terminal; KEGG: nmu:Nmul_A0445 HflK protein; SMART: Band 7 protein; HflK protein complement(2146402..2147580) Nitrosomonas sp. AL212 10298705 YP_004295163.1 CDS NAL212_2173 NC_015222.1 2147601 2148773 R KEGG: neu:NE1286 GTP-binding protein HflX; TIGRFAM: GTP-binding protein, HflX; Small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; GTP-binding proten HflX complement(2147601..2148773) Nitrosomonas sp. AL212 10298706 YP_004295164.1 CDS NAL212_2174 NC_015222.1 2148788 2149033 R KEGG: neu:NE1287 RNA-binding protein Hfq; TIGRFAM: Host factor Hfq; PFAM: Like-Sm ribonucleoprotein (LSM) domain; RNA chaperone Hfq complement(2148788..2149033) Nitrosomonas sp. AL212 10298707 YP_004295165.1 CDS NAL212_2175 NC_015222.1 2149289 2150281 R KEGG: neu:NE1315 cytochrome c551 peroxidase; PFAM: Di-haem cytochrome c peroxidase; Cytochrome c, class I; cytochrome-c peroxidase complement(2149289..2150281) Nitrosomonas sp. AL212 10298708 YP_004295166.1 CDS NAL212_2176 NC_015222.1 2150454 2151014 R PFAM: NUDIX hydrolase domain; KEGG: nmu:Nmul_A0449 dinucleoside polyphosphate hydrolase; NUDIX hydrolase complement(2150454..2151014) Nitrosomonas sp. AL212 10298709 YP_004295167.1 CDS NAL212_2177 NC_015222.1 2151227 2152936 D KEGG: net:Neut_1247 prolyl-tRNA synthetase; TIGRFAM: Prolyl-tRNA synthetase, class IIa, bacterial; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; YbaK/aminoacyl-tRNA synthetase-associated domain; Anticodon-binding; prolyl-tRNA synthetase 2151227..2152936 Nitrosomonas sp. AL212 10298710 YP_004295168.1 CDS NAL212_2178 NC_015222.1 2152924 2153502 D PFAM: Lytic transglycosylase-like, catalytic; KEGG: neu:NE1318 SLT domain-containing protein; Lytic transglycosylase catalytic 2152924..2153502 Nitrosomonas sp. AL212 10298711 YP_004295169.1 CDS NAL212_2179 NC_015222.1 2153586 2154050 R PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; KEGG: net:Neut_1245 redoxin domain-containing protein; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen complement(2153586..2154050) Nitrosomonas sp. AL212 10298712 YP_004295170.1 CDS NAL212_2180 NC_015222.1 2154091 2155623 R SMART: 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; TIGRFAM: 2-isopropylmalate synthase, bacterial type; KEGG: net:Neut_1244 2-isopropylmalate synthase; PFAM: Pyruvate carboxyltransferase; 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; 2-isopropylmalate synthase complement(2154091..2155623) Nitrosomonas sp. AL212 10298713 YP_004295171.1 CDS NAL212_2181 NC_015222.1 2155854 2156627 R KEGG: net:Neut_1258 CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol/serine O-phosphatidyltransferase complement(2155854..2156627) Nitrosomonas sp. AL212 10298714 YP_004295172.1 CDS NAL212_2182 NC_015222.1 2156781 2157431 R TIGRFAM: Phosphatidylserine decarboxylase-related protein; KEGG: neu:NE1322 phosphatidylserine decarboxylase; PFAM: Phosphatidylserine decarboxylase-related; phosphatidylserine decarboxylase-like protein complement(2156781..2157431) Nitrosomonas sp. AL212 10298715 YP_004295173.1 CDS NAL212_2183 NC_015222.1 2157495 2158511 R TIGRFAM: Acetohydroxy acid isomeroreductase; KEGG: nmu:Nmul_A0472 ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase, catalytic; Acetohydroxy acid isomeroreductase C-terminal; ketol-acid reductoisomerase complement(2157495..2158511) Nitrosomonas sp. AL212 10298716 YP_004295174.1 CDS NAL212_2184 NC_015222.1 2158627 2159118 R manually curated; TIGRFAM: Acetolactate synthase, small subunit; KEGG: nmu:Nmul_A0473 acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit, C-terminal; Amino acid-binding ACT; acetolactate synthase small subunit complement(2158627..2159118) Nitrosomonas sp. AL212 10298717 YP_004295175.1 CDS NAL212_2185 NC_015222.1 2159126 2160829 R TIGRFAM: Acetolactate synthase, large subunit, biosynthetic; KEGG: nmu:Nmul_A0474 acetolactate synthase, large subunit, biosynthetic type; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, central domain; acetolactate synthase large subunit, biosynthetic type complement(2159126..2160829) Nitrosomonas sp. AL212 10298718 YP_004295176.1 CDS NAL212_2186 NC_015222.1 2160899 2162374 R PFAM: Peptidase U62, modulator of DNA gyrase; KEGG: nmu:Nmul_A1055 peptidase U62, modulator of DNA gyrase; peptidase U62 modulator of DNA gyrase complement(2160899..2162374) Nitrosomonas sp. AL212 10298719 YP_004295177.1 CDS NAL212_2187 NC_015222.1 2162454 2163284 R PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: neu:NE1327 carbon-nitrogen hydrolase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(2162454..2163284) Nitrosomonas sp. AL212 10298720 YP_004295178.1 CDS NAL212_2188 NC_015222.1 2163281 2163442 R KEGG: ngr:NAEGRDRAFT_45689 hypothetical protein; hypothetical protein complement(2163281..2163442) Nitrosomonas sp. AL212 10298721 YP_004295179.1 CDS NAL212_2189 NC_015222.1 2163556 2166348 D KEGG: neu:NE1329 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; PFAM: Glutamate-ammonia ligase adenylyltransferase, repeated domain; PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase; (glutamate--ammonia-ligase) adenylyltransferase 2163556..2166348 Nitrosomonas sp. AL212 10298722 YP_004295180.1 CDS NAL212_2190 NC_015222.1 2166532 2166981 D KEGG: gca:Galf_2551 pilus biogenesis protein TapA precursor, putative; pilus biogenesis protein TapA 2166532..2166981 Nitrosomonas sp. AL212 10298723 YP_004295181.1 CDS NAL212_2192 NC_015222.1 2167426 2169807 R KEGG: net:Neut_2128 putative GAF sensor protein; PFAM: Type II secretion system protein E; General secretory system II, protein E, N-terminal; GAF; SMART: GAF; ATPase, AAA+ type, core; putative phytochrome sensor protein complement(2167426..2169807) Nitrosomonas sp. AL212 10298725 YP_004295182.1 CDS NAL212_2193 NC_015222.1 2169819 2170583 R KEGG: neu:NE2291 cAMP phosphodiesterase; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like; cyclic-AMP phosphodiesterase complement(2169819..2170583) Nitrosomonas sp. AL212 10298726 YP_004295183.1 CDS NAL212_2194 NC_015222.1 2170605 2171030 R PFAM: UspA; KEGG: net:Neut_2130 UspA domain-containing protein; UspA domain-containing protein complement(2170605..2171030) Nitrosomonas sp. AL212 10298727 YP_004295184.1 CDS NAL212_2195 NC_015222.1 2171064 2171786 R KEGG: nmu:Nmul_A2473 integral membrane protein TerC; TIGRFAM: Integral membrane protein YjbE; PFAM: Integral membrane protein TerC; YjbE family integral membrane protein complement(2171064..2171786) Nitrosomonas sp. AL212 10298728 YP_004295185.1 CDS NAL212_2196 NC_015222.1 2171830 2173014 R PFAM: Patatin/Phospholipase A2-related; KEGG: neu:NE2294 patatin; patatin complement(2171830..2173014) Nitrosomonas sp. AL212 10298729 YP_004295186.1 CDS NAL212_2197 NC_015222.1 2173007 2173264 R KEGG: mfa:Mfla_1629 hypothetical protein; hypothetical protein complement(2173007..2173264) Nitrosomonas sp. AL212 10298730 YP_004295187.1 CDS NAL212_2198 NC_015222.1 2173425 2174387 D KEGG: neu:NE2295 prolyl aminopeptidase; TIGRFAM: Peptidase S33, proline iminopeptidase 1; PFAM: Alpha/beta hydrolase fold-1; proline iminopeptidase 2173425..2174387 Nitrosomonas sp. AL212 10298731 YP_004295188.1 CDS NAL212_2199 NC_015222.1 2174434 2175150 R KEGG: hch:HCH_04016 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PapS reductase)/FAD synthetase and related enzyme; PFAM: Phosphoadenosine phosphosulphate reductase; phosphoadenylyl-sulfate reductase (thioredoxin) complement(2174434..2175150) Nitrosomonas sp. AL212 10298732 YP_004295189.1 CDS NAL212_2200 NC_015222.1 2175562 2176077 D KEGG: vcn:VOLCADRAFT_88465 hypothetical protein; hypothetical protein 2175562..2176077 Nitrosomonas sp. AL212 10298733 YP_004295190.1 CDS NAL212_2201 NC_015222.1 2176438 2176980 D PFAM: Protein of unknown function DUF785; KEGG: psp:PSPPH_2054 hypothetical protein; hypothetical protein 2176438..2176980 Nitrosomonas sp. AL212 10298734 YP_004295191.1 CDS NAL212_2202 NC_015222.1 2177155 2177703 D KEGG: net:Neut_1560 transcription elongation factor GreB; TIGRFAM: Transcription elongation factor GreB; PFAM: Transcription elongation factor, GreA/GreB, N-terminal; Transcription elongation factor, GreA/GreB, C-terminal; transcription elongation factor GreB 2177155..2177703 Nitrosomonas sp. AL212 10298735 YP_004295192.1 CDS NAL212_2203 NC_015222.1 2177842 2178843 R TIGRFAM: PEP-CTERM anchor; PFAM: von Willebrand factor, type A; PEP-CTERM bacterial; KEGG: rde:RD1_B0031 von Willebrand factor type A domain-containing protein; SMART: von Willebrand factor, type A; PEP motif putative anchor domain-containing protein complement(2177842..2178843) Nitrosomonas sp. AL212 10298736 YP_004295193.1 CDS NAL212_2204 NC_015222.1 2179268 2180140 R SMART: ATPase, AAA+ type, core; TIGRFAM: Phosphate transport system permease protein 1; KEGG: gca:Galf_2284 phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter-like; phosphate ABC transporter ATPase complement(2179268..2180140) Nitrosomonas sp. AL212 10298737 YP_004295194.1 CDS NAL212_2205 NC_015222.1 2180209 2181054 R KEGG: gca:Galf_2283 phosphate ABC transporter, inner membrane subunit PstA; TIGRFAM: Phosphate transport system permease protein 2; PFAM: Binding-protein-dependent transport systems inner membrane component; phosphate ABC transporter permease complement(2180209..2181054) Nitrosomonas sp. AL212 10298738 YP_004295195.1 CDS NAL212_2206 NC_015222.1 2181063 2182025 R KEGG: slt:Slit_1066 phosphate ABC transporter, inner membrane subunit PstC; TIGRFAM: Phosphate ABC transporter, permease protein PstC; PFAM: Binding-protein-dependent transport systems inner membrane component; phosphate ABC transporter permease complement(2181063..2182025) Nitrosomonas sp. AL212 10298739 YP_004295196.1 CDS NAL212_2207 NC_015222.1 2182074 2183123 R KEGG: meh:M301_1986 phosphate ABC transporter, periplasmic phosphate-binding protein; TIGRFAM: Periplasmic phosphate binding protein; PFAM: Bacterial extracellular solute-binding, family 1; phosphate ABC transporter substrate-binding protein complement(2182074..2183123) Nitrosomonas sp. AL212 10298740 YP_004295197.1 CDS NAL212_2208 NC_015222.1 2183581 2183844 R KEGG: soz:Spy49_1022 conserved hypothetical protein, possible permease; hypothetical protein complement(2183581..2183844) Nitrosomonas sp. AL212 10298741 YP_004295198.1 CDS NAL212_2209 NC_015222.1 2183876 2185201 R PFAM: Protein of unknown function DUF839; KEGG: tbd:Tbd_1423 putative phosphatase; hypothetical protein complement(2183876..2185201) Nitrosomonas sp. AL212 10298742 YP_004295199.1 CDS NAL212_2210 NC_015222.1 2185540 2187138 R KEGG: nhl:Nhal_3832 hypothetical protein; hypothetical protein complement(2185540..2187138) Nitrosomonas sp. AL212 10298743 YP_004295200.1 CDS NAL212_2211 NC_015222.1 2187307 2188230 R PFAM: Bile acid:sodium symporter; KEGG: nmu:Nmul_A1633 bile acid:sodium symporter; bile acid:sodium symporter complement(2187307..2188230) Nitrosomonas sp. AL212 10298744 YP_004295201.1 CDS NAL212_2212 NC_015222.1 2188380 2189534 R PFAM: Integrase, catalytic core; KEGG: bac:BamMC406_6587 integrase catalytic region; integrase catalytic region complement(2188380..2189534) Nitrosomonas sp. AL212 10298745 YP_004295202.1 CDS NAL212_2213 NC_015222.1 2189819 2191807 R KEGG: syf:Synpcc7942_1337 integrins alpha chain; PFAM: FG-GAP; Haemolysin-type calcium-binding repeat; SMART: Integrin alpha beta-propellor; FG-GAP repeat-containing protein complement(2189819..2191807) Nitrosomonas sp. AL212 10298746 YP_004295203.1 CDS NAL212_2214 NC_015222.1 2192173 2192295 R hypothetical protein complement(2192173..2192295) Nitrosomonas sp. AL212 10298747 YP_004295204.1 CDS NAL212_2215 NC_015222.1 2192308 2195490 R PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: nhl:Nhal_3833 TonB-dependent receptor; TonB-dependent receptor complement(2192308..2195490) Nitrosomonas sp. AL212 10298748 YP_004295205.1 CDS NAL212_2216 NC_015222.1 2195613 2196788 R KEGG: nhl:Nhal_3834 tetratricopeptide domain protein; hypothetical protein complement(2195613..2196788) Nitrosomonas sp. AL212 10298749 YP_004295206.1 CDS NAL212_2217 NC_015222.1 2196797 2197417 R KEGG: nhl:Nhal_3835 TonB family protein; TIGRFAM: TonB, C-terminal; PFAM: TonB, C-terminal; TonB family protein complement(2196797..2197417) Nitrosomonas sp. AL212 10298750 YP_004295207.1 CDS NAL212_2218 NC_015222.1 2197438 2197842 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: nhl:Nhal_3836 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR complement(2197438..2197842) Nitrosomonas sp. AL212 10298751 YP_004295208.1 CDS NAL212_2219 NC_015222.1 2197839 2198468 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: nhl:Nhal_3837 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel complement(2197839..2198468) Nitrosomonas sp. AL212 10298752 YP_004295209.1 CDS NAL212_2220 NC_015222.1 2198470 2199963 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: nhl:Nhal_3838 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel complement(2198470..2199963) Nitrosomonas sp. AL212 10298753 YP_004295210.1 CDS NAL212_2221 NC_015222.1 2199960 2200754 R KEGG: nhl:Nhal_3839 hypothetical protein; hypothetical protein complement(2199960..2200754) Nitrosomonas sp. AL212 10298754 YP_004295211.1 CDS NAL212_2222 NC_015222.1 2201421 2202125 R KEGG: mex:Mext_2992 hypothetical protein; hypothetical protein complement(2201421..2202125) Nitrosomonas sp. AL212 10298755 YP_004295212.1 CDS NAL212_2223 NC_015222.1 2202355 2203869 R PFAM: Sulphate transporter; KEGG: mei:Msip34_0561 sulphate transporter; sulfate transporter complement(2202355..2203869) Nitrosomonas sp. AL212 10298756 YP_004295213.1 CDS NAL212_2224 NC_015222.1 2204097 2205434 D PFAM: Protein of unknown function DUF2254, membrane; KEGG: sbl:Sbal_1905 membrane protein; hypothetical protein 2204097..2205434 Nitrosomonas sp. AL212 10298757 YP_004295214.1 CDS NAL212_2225 NC_015222.1 2205518 2205991 R KEGG: neu:NE1199 hypothetical protein; hypothetical protein complement(2205518..2205991) Nitrosomonas sp. AL212 10298758 YP_004295215.1 CDS NAL212_2226 NC_015222.1 2206198 2207112 D KEGG: nmu:Nmul_A0637 hypothetical protein; PFAM: SH3, type 3; SMART: SH3-like domain, bacterial; SH3 type 3 domain-containing protein 2206198..2207112 Nitrosomonas sp. AL212 10298759 YP_004295216.1 CDS NAL212_2227 NC_015222.1 2207115 2208791 R SMART: Diguanylate cyclase, predicted; HAMP linker domain; TIGRFAM: Diguanylate cyclase, predicted; KEGG: nmu:Nmul_A0638 diguanylate cyclase; PFAM: Diguanylate cyclase, predicted; HAMP linker domain; diguanylate cyclase complement(2207115..2208791) Nitrosomonas sp. AL212 10298760 YP_004295217.1 CDS NAL212_2228 NC_015222.1 2208819 2209244 R PFAM: Globin, truncated bacterial-like; KEGG: net:Neut_1441 putative sec-independent protein translocase protein TatC; globin complement(2208819..2209244) Nitrosomonas sp. AL212 10298761 YP_004295218.1 CDS NAL212_2229 NC_015222.1 2209641 2211251 D KEGG: net:Neut_0596 malate dehydrogenase; PFAM: Malic enzyme, NAD-binding; Malic enzyme, N-terminal; SMART: Malic enzyme, NAD-binding; malic protein NAD-binding protein 2209641..2211251 Nitrosomonas sp. AL212 10298762 YP_004295219.1 CDS NAL212_2230 NC_015222.1 2211282 2212112 R TIGRFAM: Phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB, PSPase-like; KEGG: nmu:Nmul_A0636 phosphoserine phosphatase SerB; PFAM: Haloacid dehalogenase-like hydrolase; phosphoserine phosphatase SerB complement(2211282..2212112) Nitrosomonas sp. AL212 10298763 YP_004295220.1 CDS NAL212_2231 NC_015222.1 2212125 2213588 R TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; Metal-dependent hydrolase HDOD; KEGG: neu:NE0440 domain of unknown function, DUF9; SMART: Diguanylate cyclase, predicted; diguanylate cyclase complement(2212125..2213588) Nitrosomonas sp. AL212 10298764 YP_004295221.1 CDS NAL212_2232 NC_015222.1 2213895 2215391 D HAMAP: Peptidase, M17, probable cytosol aminopeptidase; KEGG: neu:NE0441 leucyl aminopeptidase; PFAM: Peptidase M17, leucyl aminopeptidase, C-terminal; Peptidase M17, leucyl aminopeptidase, N-terminal; cytosol aminopeptidase 2213895..2215391 Nitrosomonas sp. AL212 10298765 YP_004295222.1 CDS NAL212_2233 NC_015222.1 2215388 2215867 D PFAM: DNA polymerase III chi subunit, HolC; KEGG: nmu:Nmul_A0745 DNA polymerase III chi subunit, HolC; DNA polymerase III chi subunit HolC 2215388..2215867 Nitrosomonas sp. AL212 10298766 YP_004295223.1 CDS NAL212_2234 NC_015222.1 2215885 2216244 D KEGG: neu:NE0443 hypothetical protein; hypothetical protein 2215885..2216244 Nitrosomonas sp. AL212 10298767 YP_004295224.1 CDS NAL212_2235 NC_015222.1 2216399 2219161 D TIGRFAM: Valyl-tRNA synthetase; KEGG: neu:NE0444 valyl-tRNA synthetase; valyl-tRNA synthetase 2216399..2219161 Nitrosomonas sp. AL212 10298768 YP_004295225.1 CDS NAL212_2236 NC_015222.1 2219458 2220090 R KEGG: net:Neut_1839 two component transcriptional regulator, LuxR family protein; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; two component transcriptional regulator, LuxR family complement(2219458..2220090) Nitrosomonas sp. AL212 10298769 YP_004295226.1 CDS NAL212_2238 NC_015222.1 2221584 2223200 D KEGG: amr:AM1_6172 IS5 family transposase; IS5 family transposase 2221584..2223200 Nitrosomonas sp. AL212 10298771 YP_004295227.1 CDS NAL212_2239 NC_015222.1 2223165 2223476 R KEGG: gsu:GSU0010 sensory box histidine kinase/response regulator; hypothetical protein complement(2223165..2223476) Nitrosomonas sp. AL212 10298772 YP_004295228.1 CDS NAL212_2240 NC_015222.1 2223830 2225539 D PFAM: Flagellin, D0/D1 domain; Flagellin hook, IN motif; KEGG: azo:azo2704 flagellin; flagellin domain-containing protein 2223830..2225539 Nitrosomonas sp. AL212 10298773 YP_004295229.1 CDS NAL212_2241 NC_015222.1 2225624 2225992 D PFAM: Flagellar protein FlaG protein; KEGG: neu:NE1594 hypothetical protein; flagellar protein FlaG protein 2225624..2225992 Nitrosomonas sp. AL212 10298774 YP_004295230.1 CDS NAL212_2242 NC_015222.1 2226032 2227462 D PFAM: Flagellar hook-associated 2, C-terminal; Flagellar hook-associated protein 2, N-terminal; KEGG: neu:NE1595 flagellar hook-associated protein 2; flagellar hook-associated 2 domain-containing protein 2226032..2227462 Nitrosomonas sp. AL212 10298775 YP_004295231.1 CDS NAL212_2243 NC_015222.1 2227495 2227920 D KEGG: neu:NE1596 flagellar protein FliS; TIGRFAM: Flagellar protein FliS; PFAM: Flagellar protein FliS; flagellar protein FliS 2227495..2227920 Nitrosomonas sp. AL212 10298776 YP_004295232.1 CDS NAL212_2244 NC_015222.1 2227957 2228292 D PFAM: Flagellar export chaperone, FliT; KEGG: neu:NE1597 hypothetical protein; flagellar export chaperone 2227957..2228292 Nitrosomonas sp. AL212 10298777 YP_004295233.1 CDS NAL212_2245 NC_015222.1 2228361 2229389 D KEGG: net:Neut_0751 hypothetical protein; hypothetical protein 2228361..2229389 Nitrosomonas sp. AL212 10298778 YP_004295234.1 CDS NAL212_2246 NC_015222.1 2229376 2229705 D PFAM: Type III secretion exporter; KEGG: neu:NE2078 flagellar biosynthetic protein; type III secretion exporter 2229376..2229705 Nitrosomonas sp. AL212 10298779 YP_004295235.1 CDS NAL212_2247 NC_015222.1 2229708 2230493 D PFAM: YcgR; Type IV pilus assembly PilZ; KEGG: neu:NE2079 hypothetical protein; YcgR family protein 2229708..2230493 Nitrosomonas sp. AL212 10298780 YP_004295236.1 CDS NAL212_2251 NC_015222.1 2232089 2233618 D PFAM: Integrase, catalytic core; KEGG: swi:Swit_4958 transposase; integrase catalytic region 2232089..2233618 Nitrosomonas sp. AL212 10298784 YP_004295237.1 CDS NAL212_2252 NC_015222.1 2233611 2234432 D KEGG: atu:Atu4861 IS21 family transposase; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; IstB domain-containing protein ATP-binding protein 2233611..2234432 Nitrosomonas sp. AL212 10298785 YP_004295238.1 CDS NAL212_2253 NC_015222.1 2234615 2234962 R PFAM: YCII-related; KEGG: pfl:PFL_4564 DGPF domain-containing protein; hypothetical protein complement(2234615..2234962) Nitrosomonas sp. AL212 10298786 YP_004295239.1 CDS NAL212_2254 NC_015222.1 2234998 2235372 R PFAM: YCII-related; KEGG: hch:HCH_05597 hypothetical protein; hypothetical protein complement(2234998..2235372) Nitrosomonas sp. AL212 10298787 YP_004295240.1 CDS NAL212_2255 NC_015222.1 2235451 2236704 R KEGG: nde:NIDE3487 putative RNA polymerase ECF-type sigma factor containing TPR repeat; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; putative ECF subfamily RNA polymerase sigma-24 subunit complement(2235451..2236704) Nitrosomonas sp. AL212 10298788 YP_004295241.1 CDS NAL212_2256 NC_015222.1 2237112 2237210 D hypothetical protein 2237112..2237210 Nitrosomonas sp. AL212 10298789 YP_004295242.1 CDS NAL212_2257 NC_015222.1 2238127 2239290 D PFAM: Glycoside hydrolase, family 42, N-terminal; KEGG: nde:NIDE1370 hypothetical protein; glycoside hydrolase family protein 2238127..2239290 Nitrosomonas sp. AL212 10298790 YP_004295243.1 CDS NAL212_2258 NC_015222.1 2239328 2239507 D hypothetical protein 2239328..2239507 Nitrosomonas sp. AL212 10298791 YP_004295244.1 CDS NAL212_2259 NC_015222.1 2239923 2241083 D KEGG: nde:NIDE1370 hypothetical protein; hypothetical protein 2239923..2241083 Nitrosomonas sp. AL212 10298792 YP_004295245.1 CDS NAL212_2260 NC_015222.1 2241748 2242911 D KEGG: nde:NIDE1370 hypothetical protein; hypothetical protein 2241748..2242911 Nitrosomonas sp. AL212 10298793 YP_004295246.1 CDS NAL212_2261 NC_015222.1 2243175 2244905 R TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; PAS fold-4; Diguanylate cyclase, predicted; KEGG: tjr:TherJR_1729 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS; PAC motif; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(2243175..2244905) Nitrosomonas sp. AL212 10298794 YP_004295247.1 CDS NAL212_2262 NC_015222.1 2245151 2245570 R PFAM: Peptide chain release factor class I/class II; KEGG: sde:Sde_3201 hypothetical protein; class I peptide chain release factor complement(2245151..2245570) Nitrosomonas sp. AL212 10298795 YP_004295248.1 CDS NAL212_2263 NC_015222.1 2245848 2247497 D KEGG: cja:CJA_3640 type I restriction-modification system specificity subunit; PFAM: DNA methylase, adenine-specific; N6 adenine-specific DNA methyltransferase, N12 class, N-terminal; adenine-specific DNA-methyltransferase 2245848..2247497 Nitrosomonas sp. AL212 10298796 YP_004295249.1 CDS NAL212_2264 NC_015222.1 2247494 2248693 D PFAM: Restriction endonuclease, type I, S subunit, EcoBI; KEGG: mpt:Mpe_A0006 restriction modification system, type I; restriction modification system DNA specificity domain 2247494..2248693 Nitrosomonas sp. AL212 10298797 YP_004295250.1 CDS NAL212_2265 NC_015222.1 2248741 2249268 D KEGG: hap:HAPS_0834 hypothetical protein; hypothetical protein 2248741..2249268 Nitrosomonas sp. AL212 10298798 YP_004295251.1 CDS NAL212_2266 NC_015222.1 2249347 2249541 D PFAM: Protein of unknown function DUF2191; KEGG: xau:Xaut_3924 hypothetical protein; hypothetical protein 2249347..2249541 Nitrosomonas sp. AL212 10298799 YP_004295252.1 CDS NAL212_2267 NC_015222.1 2249550 2249924 D PFAM: PilT protein, N-terminal; KEGG: sjp:SJA_C1-29410 putative nucleic-acid-binding protein; PilT protein domain-containing protein 2249550..2249924 Nitrosomonas sp. AL212 10298800 YP_004295253.1 CDS NAL212_2269 NC_015222.1 2252935 2253255 D PFAM: Transposase IS3/IS911family; KEGG: alv:Alvin_1732 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 2252935..2253255 Nitrosomonas sp. AL212 10298802 YP_004295254.1 CDS NAL212_2270 NC_015222.1 2253255 2254154 D PFAM: Integrase, catalytic core; KEGG: pde:Pden_3846 integrase catalytic subunit; integrase catalytic region 2253255..2254154 Nitrosomonas sp. AL212 10298803 YP_004295255.1 CDS NAL212_2271 NC_015222.1 2254494 2255372 R PFAM: Domain of unknown function DUF88; KEGG: neu:NE0665 hypothetical protein; hypothetical protein complement(2254494..2255372) Nitrosomonas sp. AL212 10298804 YP_004295256.1 CDS NAL212_2272 NC_015222.1 2255545 2256831 D KEGG: neu:NE2199 flavin-containing monooxygenase (FMO); PFAM: Flavin-containing monooxygenase-like; flavin-containing monooxygenase 2255545..2256831 Nitrosomonas sp. AL212 10298805 YP_004295257.1 CDS NAL212_2273 NC_015222.1 2256926 2258407 D PFAM: Uncharacterised protein family UPF0061; KEGG: pca:Pcar_0297 hypothetical protein; hypothetical protein 2256926..2258407 Nitrosomonas sp. AL212 10298806 YP_004295258.1 CDS NAL212_2274 NC_015222.1 2258446 2258829 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nmu:Nmul_A1593 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 2258446..2258829 Nitrosomonas sp. AL212 10298807 YP_004295259.1 CDS NAL212_2275 NC_015222.1 2258876 2259514 D KEGG: tau:Tola_1511 hypothetical protein; hypothetical protein 2258876..2259514 Nitrosomonas sp. AL212 10298808 YP_004295260.1 CDS NAL212_2276 NC_015222.1 2259519 2260019 D PFAM: Polyketide cyclase/dehydrase; KEGG: bph:Bphy_5310 hypothetical protein; polyketide cyclase/dehydrase 2259519..2260019 Nitrosomonas sp. AL212 10298809 YP_004295261.1 CDS NAL212_2277 NC_015222.1 2260048 2260233 R PFAM: Protein of unknown function DUF3330; KEGG: nhl:Nhal_3036 hypothetical protein; hypothetical protein complement(2260048..2260233) Nitrosomonas sp. AL212 10298810 YP_004295262.1 CDS NAL212_2278 NC_015222.1 2260310 2260855 R KEGG: neu:NE0083 hypothetical protein; hypothetical protein complement(2260310..2260855) Nitrosomonas sp. AL212 10298811 YP_004295263.1 CDS NAL212_2279 NC_015222.1 2260871 2261299 R KEGG: nmu:Nmul_A0147 hypothetical protein; hypothetical protein complement(2260871..2261299) Nitrosomonas sp. AL212 10298812 YP_004295264.1 CDS NAL212_2280 NC_015222.1 2261454 2262071 R KEGG: meh:M301_1663 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; two component transcriptional regulator, LuxR family complement(2261454..2262071) Nitrosomonas sp. AL212 10298813 YP_004295265.1 CDS NAL212_2281 NC_015222.1 2262068 2263564 R TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; PAS fold-3; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: meh:M301_1662 PAS/PAC sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; PAS; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS/PAC sensor signal transduction histidine kinase complement(2262068..2263564) Nitrosomonas sp. AL212 10298814 YP_004295266.1 CDS NAL212_2282 NC_015222.1 2263884 2264126 D KEGG: ngr:NAEGRDRAFT_78100 CAP_ED domain-containing protein; hypothetical protein 2263884..2264126 Nitrosomonas sp. AL212 10298815 YP_004295267.1 CDS NAL212_2283 NC_015222.1 2264129 2265121 D PFAM: Protein of unknown function DUF897; KEGG: rce:RC1_1255 hypothetical protein; hypothetical protein 2264129..2265121 Nitrosomonas sp. AL212 10298816 YP_004295268.1 CDS NAL212_2284 NC_015222.1 2265368 2265685 D KEGG: tal:Thal_0656 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 2265368..2265685 Nitrosomonas sp. AL212 10298817 YP_004295269.1 CDS NAL212_2285 NC_015222.1 2266002 2266175 D KEGG: nmu:Nmul_A0029 hypothetical protein; hypothetical protein 2266002..2266175 Nitrosomonas sp. AL212 10298818 YP_004295270.1 CDS NAL212_2286 NC_015222.1 2266182 2266670 R TIGRFAM: Peptidase A8, signal peptidase II; KEGG: nmu:Nmul_A2655 lipoprotein signal peptidase; PFAM: Peptidase A8, signal peptidase II; lipoprotein signal peptidase complement(2266182..2266670) Nitrosomonas sp. AL212 10298819 YP_004295271.1 CDS NAL212_2287 NC_015222.1 2266704 2269502 R TIGRFAM: Isoleucyl-tRNA synthetase, class Ia; KEGG: net:Neut_1439 isoleucyl-tRNA synthetase; isoleucyl-tRNA synthetase complement(2266704..2269502) Nitrosomonas sp. AL212 10298820 YP_004295272.1 CDS NAL212_2288 NC_015222.1 2269521 2270489 R SMART: Riboflavin kinase; TIGRFAM: Riboflavin kinase/FAD synthetase; KEGG: nmu:Nmul_A2653 riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; riboflavin biosynthesis protein RibF complement(2269521..2270489) Nitrosomonas sp. AL212 10298821 YP_004295273.1 CDS NAL212_2289 NC_015222.1 2270894 2271829 D KEGG: alv:Alvin_2929 hemolysin-type calcium-binding region; hemolysin-type calcium-binding region 2270894..2271829 Nitrosomonas sp. AL212 10298822 YP_004295274.1 CDS NAL212_2290 NC_015222.1 2272129 2274243 D PFAM: Sulphatase-modifying factor; Methyltransferase type 11; KEGG: net:Neut_0838 hypothetical protein; sulfatase-modifying factor protein 2272129..2274243 Nitrosomonas sp. AL212 10298823 YP_004295275.1 CDS NAL212_2291 NC_015222.1 2274240 2275421 D KEGG: nmu:Nmul_A2256 aminotransferase, class I and II; PFAM: Aminotransferase, class I/classII; cystathionine beta-lyase 2274240..2275421 Nitrosomonas sp. AL212 10298824 YP_004295276.1 CDS NAL212_2292 NC_015222.1 2275593 2276795 D KEGG: net:Neut_2234 succinyl-diaminopimelate desuccinylase; TIGRFAM: Succinyl-diaminopimelate desuccinylase, proteobacteria; PFAM: Peptidase M20; Peptidase M20, dimerisation; succinyl-diaminopimelate desuccinylase 2275593..2276795 Nitrosomonas sp. AL212 10298825 YP_004295277.1 CDS NAL212_2293 NC_015222.1 2276864 2278186 R SMART: ATPase, AAA+ type, core; TIGRFAM: Heat shock protein HslU; KEGG: net:Neut_0611 ATP-dependent protease ATP-binding subunit HslU; HAMAP: Heat shock protein HslU; PFAM: ATPase, AAA-2; ATP-dependent hsl protease ATP-binding subunit hslU complement(2276864..2278186) Nitrosomonas sp. AL212 10298826 YP_004295278.1 CDS NAL212_2294 NC_015222.1 2278308 2278829 R KEGG: nmu:Nmul_A2545 ATP-dependent protease peptidase subunit; TIGRFAM: ATP-dependent protease, HslV subunit; PFAM: Proteasome, subunit alpha/beta; ATP-dependent protease HslVU, peptidase subunit complement(2278308..2278829) Nitrosomonas sp. AL212 10298827 YP_004295279.1 CDS NAL212_2295 NC_015222.1 2278909 2279802 R KEGG: mei:Msip34_0172 tyrosine recombinase XerC; TIGRFAM: Tyrosine recombinase XerC; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; tyrosine recombinase XerC complement(2278909..2279802) Nitrosomonas sp. AL212 10298828 YP_004295280.1 CDS NAL212_2296 NC_015222.1 2279786 2280493 R PFAM: Protein of unknown function DUF484; KEGG: nmu:Nmul_A2543 hypothetical protein; hypothetical protein complement(2279786..2280493) Nitrosomonas sp. AL212 10298829 YP_004295281.1 CDS NAL212_2297 NC_015222.1 2280511 2281338 R TIGRFAM: Diaminopimelate epimerase; KEGG: nmu:Nmul_A2542 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; diaminopimelate epimerase complement(2280511..2281338) Nitrosomonas sp. AL212 10298830 YP_004295282.1 CDS NAL212_2298 NC_015222.1 2281342 2281866 R PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: app:CAP2UW1_4174 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase complement(2281342..2281866) Nitrosomonas sp. AL212 10298831 YP_004295283.1 CDS NAL212_2299 NC_015222.1 2282050 2282742 R PFAM: Copper chaperone SCO1/SenC; KEGG: pfo:Pfl01_2002 electron transport protein SCO1/SenC; electron transport protein SCO1/SenC complement(2282050..2282742) Nitrosomonas sp. AL212 10298832 YP_004295284.1 CDS NAL212_2300 NC_015222.1 2282764 2284602 R KEGG: nde:NIDE3511 putative multicopper oxidase, type 2; PFAM: Multicopper oxidase, type 2; bilirubin oxidase complement(2282764..2284602) Nitrosomonas sp. AL212 10298833 YP_004295285.1 CDS NAL212_2301 NC_015222.1 2284745 2289664 R KEGG: lch:Lcho_2298 heme peroxidase; PFAM: Haem peroxidase, animal; Haemolysin-type calcium-binding repeat; Peptidase M10B, serralysin, C-terminal; peroxidase/Serralysin complement(2284745..2289664) Nitrosomonas sp. AL212 10298834 YP_004295286.1 CDS NAL212_2302 NC_015222.1 2290213 2290665 R PFAM: Uncharacterised protein family PGPGW, transmembrane; KEGG: nde:NIDE4159 hypothetical protein; hypothetical protein complement(2290213..2290665) Nitrosomonas sp. AL212 10298835 YP_004295287.1 CDS NAL212_2303 NC_015222.1 2290796 2291605 R KEGG: nmu:Nmul_A2766 ammonia monooxygenase/methane monooxygenase, subunit C; TIGRFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit C; PFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit C; methane monooxygenase/ammonia monooxygenase subunit C complement(2290796..2291605) Nitrosomonas sp. AL212 10298836 YP_004295288.1 CDS NAL212_2304 NC_015222.1 2291966 2293687 D PFAM: Phosphate-selective porin O/P; KEGG: nmu:Nmul_A2678 phosphate-selective porin O and P; phosphate-selective porin O and P 2291966..2293687 Nitrosomonas sp. AL212 10298837 YP_004295289.1 CDS NAL212_2305 NC_015222.1 2293871 2294887 D TIGRFAM: Phosphate binding protein; KEGG: nmu:Nmul_A0486 phosphate binding protein; phosphate binding protein 2293871..2294887 Nitrosomonas sp. AL212 10298838 YP_004295290.1 CDS NAL212_2306 NC_015222.1 2295176 2296687 D PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: nmu:Nmul_A2332 binding-protein dependent transport system inner membrane protein; ABC transporter permease 2295176..2296687 Nitrosomonas sp. AL212 10298839 YP_004295291.1 CDS NAL212_2307 NC_015222.1 2296684 2298744 D SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: nmu:Nmul_A2331 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; peptide ABC transporter ATPase 2296684..2298744 Nitrosomonas sp. AL212 10298840 YP_004295292.1 CDS NAL212_2308 NC_015222.1 2298749 2300359 D KEGG: neu:NE2481 peptide chain release factor 3; TIGRFAM: Peptide chain release factor 3; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; peptide chain release factor 3 2298749..2300359 Nitrosomonas sp. AL212 10298841 YP_004295293.1 CDS NAL212_2309 NC_015222.1 2300371 2301438 D KEGG: cps:CPS_1981 hypothetical protein; hypothetical protein 2300371..2301438 Nitrosomonas sp. AL212 10298842 YP_004295294.1 CDS NAL212_2310 NC_015222.1 2301435 2302301 D KEGG: nmu:Nmul_A0065 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP00255; PFAM: YicC-like, N-terminal; Domain of unknown function DUF1732; hypothetical protein 2301435..2302301 Nitrosomonas sp. AL212 10298843 YP_004295295.1 CDS NAL212_2311 NC_015222.1 2302522 2302749 D KEGG: nmu:Nmul_A1813 hypothetical protein; hypothetical protein 2302522..2302749 Nitrosomonas sp. AL212 10298844 YP_004295296.1 CDS NAL212_2312 NC_015222.1 2302760 2304412 D manually curated; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: slt:Slit_2634 multi-sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; integral membrane sensor signal transduction histidine kinase 2302760..2304412 Nitrosomonas sp. AL212 10298845 YP_004295297.1 CDS NAL212_2313 NC_015222.1 2304403 2305839 D KEGG: slt:Slit_2633 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core; two component, sigma54 specific, transcriptional regulator, Fis family 2304403..2305839 Nitrosomonas sp. AL212 10298846 YP_004295298.1 CDS NAL212_2314 NC_015222.1 2305967 2306545 R PFAM: Protein of unknown function DUF2780, VcgC/VcgE; KEGG: nhl:Nhal_3008 hypothetical protein; hypothetical protein complement(2305967..2306545) Nitrosomonas sp. AL212 10298847 YP_004295299.1 CDS NAL212_2315 NC_015222.1 2306728 2306931 D KEGG: ngr:NAEGRDRAFT_39225 hypothetical protein; hypothetical protein 2306728..2306931 Nitrosomonas sp. AL212 10298848 YP_004295300.1 CDS NAL212_2316 NC_015222.1 2307093 2308139 D KEGG: pin:Ping_1732 magnesium and cobalt transport protein CorA; TIGRFAM: Magnesium/cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA-like; magnesium and cobalt transport protein CorA 2307093..2308139 Nitrosomonas sp. AL212 10298849 YP_004295301.1 CDS NAL212_2317 NC_015222.1 2308294 2309601 D PFAM: Transposase, IS4-like; KEGG: dde:Dde_2849 ISPg7, transposase; transposase IS4 family protein 2308294..2309601 Nitrosomonas sp. AL212 10298850 YP_004295302.1 CDS NAL212_2318 NC_015222.1 2309906 2310529 R KEGG: nmu:Nmul_A2031 hypothetical protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial; PEP motif putative anchor domain-containing protein complement(2309906..2310529) Nitrosomonas sp. AL212 10298851 YP_004295303.1 CDS NAL212_2319 NC_015222.1 2311064 2311417 R KEGG: neu:NE0846 hypothetical protein; hypothetical protein complement(2311064..2311417) Nitrosomonas sp. AL212 10298852 YP_004295304.1 CDS NAL212_2320 NC_015222.1 2311912 2312250 R TIGRFAM: Uncharacterised protein family UPF0102; HAMAP: Uncharacterised protein family UPF0102; KEGG: net:Neut_1662 hypothetical protein; PFAM: Uncharacterised protein family UPF0102; hypothetical protein complement(2311912..2312250) Nitrosomonas sp. AL212 10298853 YP_004295305.1 CDS NAL212_2321 NC_015222.1 2312240 2313355 R PFAM: LppC putative lipoprotein; KEGG: slt:Slit_2963 LppC family lipoprotein; LppC family lipoprotein complement(2312240..2313355) Nitrosomonas sp. AL212 10298854 YP_004295306.1 CDS NAL212_2322 NC_015222.1 2313366 2314223 D KEGG: nmu:Nmul_A0196 hypothetical protein; TIGRFAM: Uncharacterised protein family UPF0011; PFAM: Tetrapyrrole methylase; hypothetical protein 2313366..2314223 Nitrosomonas sp. AL212 10298855 YP_004295307.1 CDS NAL212_2323 NC_015222.1 2314287 2315324 D PFAM: Amidohydrolase 1; TIGRFAM: Dihydroorotase homodimeric type; HAMAP: Dihydroorotase homodimeric type; KEGG: nmu:Nmul_A0354 dihydroorotase; dihydroorotase 2314287..2315324 Nitrosomonas sp. AL212 10298856 YP_004295308.1 CDS NAL212_2324 NC_015222.1 2315804 2316097 D KEGG: api:100166722 hypothetical protein LOC100166722; hypothetical protein 2315804..2316097 Nitrosomonas sp. AL212 10298857 YP_004295309.1 CDS NAL212_2325 NC_015222.1 2316368 2317489 D PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal; Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal; KEGG: neu:NE1485 D-alanyl-D-alanine carboxypeptidase; SMART: Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal; beta-lactamase 2316368..2317489 Nitrosomonas sp. AL212 10298858 YP_004295310.1 CDS NAL212_2326 NC_015222.1 2317521 2318390 D KEGG: nmu:Nmul_A1990 aminotransferase, class IV; PFAM: Aminotransferase, class IV; D-amino-acid transaminase 2317521..2318390 Nitrosomonas sp. AL212 10298859 YP_004295311.1 CDS NAL212_2327 NC_015222.1 2318422 2318688 D PFAM: Protein of unknown function DUF493; KEGG: net:Neut_0759 hypothetical protein; hypothetical protein 2318422..2318688 Nitrosomonas sp. AL212 10298860 YP_004295312.1 CDS NAL212_2328 NC_015222.1 2318695 2319342 D TIGRFAM: Octanoyltransferase; KEGG: nmu:Nmul_A1988 lipoate-protein ligase B; PFAM: Biotin/lipoate A/B protein ligase; lipoate-protein ligase B 2318695..2319342 Nitrosomonas sp. AL212 10298861 YP_004295313.1 CDS NAL212_2329 NC_015222.1 2319356 2320300 D SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: Lipoate synthase; KEGG: nmu:Nmul_A1987 lipoyl synthase; PFAM: Radical SAM; lipoic acid synthetase 2319356..2320300 Nitrosomonas sp. AL212 10298862 YP_004295314.1 CDS NAL212_2330 NC_015222.1 2320336 2320752 R PFAM: Peroxiredoxin, OsmC-like protein; KEGG: net:Neut_1426 OsmC family protein; OsmC family protein complement(2320336..2320752) Nitrosomonas sp. AL212 10298863 YP_004295315.1 CDS NAL212_2331 NC_015222.1 2320839 2321150 R PFAM: Cytochrome c, class I; KEGG: neu:NE0102 cytochrome c-552 precursor; cytochrome c class I complement(2320839..2321150) Nitrosomonas sp. AL212 10298864 YP_004295316.1 CDS NAL212_2332 NC_015222.1 2321384 2323057 R TIGRFAM: Dihydroxy-acid dehydratase; KEGG: nmu:Nmul_A0346 dihydroxy-acid dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase; dihydroxy-acid dehydratase complement(2321384..2323057) Nitrosomonas sp. AL212 10298865 YP_004295317.1 CDS NAL212_2333 NC_015222.1 2323157 2323999 D KEGG: nmu:Nmul_A0348 prolipoprotein diacylglyceryl transferase; TIGRFAM: Prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase; prolipoprotein diacylglyceryl transferase 2323157..2323999 Nitrosomonas sp. AL212 10298866 YP_004295318.1 CDS NAL212_2334 NC_015222.1 2324099 2324488 D KEGG: nmu:Nmul_A2466 hypothetical protein; hypothetical protein 2324099..2324488 Nitrosomonas sp. AL212 10298867 YP_004295319.1 CDS NAL212_2335 NC_015222.1 2324762 2326069 R TIGRFAM: Signal transduction histidine kinase, phosphate regulon sensor PhoR; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: net:Neut_0960 periplasmic sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS; PAS/PAC sensor signal transduction histidine kinase complement(2324762..2326069) Nitrosomonas sp. AL212 10298868 YP_004295320.1 CDS NAL212_2336 NC_015222.1 2326220 2326942 R TIGRFAM: Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; KEGG: azo:azo0164 phosphate regulon transcriptional regulatory protein; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; winged helix family two component transcriptional regulator PhoB complement(2326220..2326942) Nitrosomonas sp. AL212 10298869 YP_004295321.1 CDS NAL212_2337 NC_015222.1 2327031 2327441 D PFAM: Gamma-butyrobetaine dioxygenase/Trimethyllysine dioxygenase, N-terminal; KEGG: nmu:Nmul_A2270 hypothetical protein; hypothetical protein 2327031..2327441 Nitrosomonas sp. AL212 10298870 YP_004295322.1 CDS NAL212_2338 NC_015222.1 2327491 2328225 D KEGG: neu:NE1146 ubiquinone/menaquinone biosynthesis methlytransferase; TIGRFAM: UbiE/COQ5 methyltransferase; PFAM: UbiE/COQ5 methyltransferase; ubiquinone/menaquinone biosynthesis methyltransferase 2327491..2328225 Nitrosomonas sp. AL212 10298871 YP_004295323.1 CDS NAL212_2339 NC_015222.1 2328343 2328726 R KEGG: net:Neut_0128 hypothetical protein; hypothetical protein complement(2328343..2328726) Nitrosomonas sp. AL212 10298872 YP_004295324.1 CDS NAL212_2340 NC_015222.1 2328849 2328944 D hypothetical protein 2328849..2328944 Nitrosomonas sp. AL212 10298873 YP_004295325.1 CDS NAL212_2341 NC_015222.1 2329394 2329624 D manually curated; KEGG: pde:Pden_2067 hypothetical protein; hypothetical protein 2329394..2329624 Nitrosomonas sp. AL212 10298874 YP_004295326.1 CDS NAL212_2342 NC_015222.1 2329847 2330383 D PFAM: Outer membrane lipoprotein Slp; KEGG: nmu:Nmul_A2260 Slp family outer membrane lipoprotein; outer membrane lipoprotein Slp 2329847..2330383 Nitrosomonas sp. AL212 10298875 YP_004295327.1 CDS NAL212_2343 NC_015222.1 2330443 2331528 R TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: ppd:Ppro_1834 diguanylate cyclase; SMART: Diguanylate cyclase, predicted; diguanylate cyclase complement(2330443..2331528) Nitrosomonas sp. AL212 10298876 YP_004295328.1 CDS NAL212_2344 NC_015222.1 2331924 2332235 D PFAM: Antibiotic biosynthesis monooxygenase; KEGG: neu:NE0621 hypothetical protein; antibiotic biosynthesis monooxygenase 2331924..2332235 Nitrosomonas sp. AL212 10298877 YP_004295329.1 CDS NAL212_2345 NC_015222.1 2332228 2333412 D KEGG: neu:NE0620 iron-containing alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type; alcohol dehydrogenase 2332228..2333412 Nitrosomonas sp. AL212 10298878 YP_004295330.1 CDS NAL212_2346 NC_015222.1 2333589 2334218 R SMART: Protein phosphatase 2C-like; KEGG: tal:Thal_0189 protein serine/threonine phosphatase; protein serine/threonine phosphatase complement(2333589..2334218) Nitrosomonas sp. AL212 10298879 YP_004295331.1 CDS NAL212_2347 NC_015222.1 2334245 2335516 R KEGG: cro:ROD_35221 hypothetical protein; hypothetical protein complement(2334245..2335516) Nitrosomonas sp. AL212 10298880 YP_004295332.1 CDS NAL212_2349 NC_015222.1 2335984 2336697 R PFAM: Dienelactone hydrolase; KEGG: cbc:CbuK_0985 carboxymethylenebutenolidase; dienelactone hydrolase complement(2335984..2336697) Nitrosomonas sp. AL212 10298882 YP_004295333.1 CDS NAL212_2350 NC_015222.1 2336808 2337329 D PFAM: Domain of unknown function DUF336; KEGG: noc:Noc_2147 hypothetical protein; hypothetical protein 2336808..2337329 Nitrosomonas sp. AL212 10298883 YP_004295334.1 CDS NAL212_2351 NC_015222.1 2337337 2338377 R TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: nmu:Nmul_A1386 DNA polymerase III, delta prime subunit; DNA polymerase III, delta prime subunit complement(2337337..2338377) Nitrosomonas sp. AL212 10298884 YP_004295335.1 CDS NAL212_2352 NC_015222.1 2338370 2338996 R TIGRFAM: Thymidylate kinase; KEGG: neu:NE2181 thymidylate kinase; PFAM: Thymidylate kinase; thymidylate kinase complement(2338370..2338996) Nitrosomonas sp. AL212 10298885 YP_004295336.1 CDS NAL212_2353 NC_015222.1 2339069 2339659 D KEGG: net:Neut_0535 N-acetyl-anhydromuranmyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; SMART: N-acetylmuramoyl-L-alanine amidase, family 2; N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD 2339069..2339659 Nitrosomonas sp. AL212 10298886 YP_004295337.1 CDS NAL212_2354 NC_015222.1 2339838 2340113 D PFAM: Protein of unknown function DUF497; KEGG: slt:Slit_0383 protein of unknown function DUF497; hypothetical protein 2339838..2340113 Nitrosomonas sp. AL212 10298887 YP_004295338.1 CDS NAL212_2355 NC_015222.1 2340097 2340381 D KEGG: tmz:Tmz1t_2739 hypothetical protein; hypothetical protein 2340097..2340381 Nitrosomonas sp. AL212 10298888 YP_004295339.1 CDS NAL212_2356 NC_015222.1 2340496 2340873 R KEGG: phu:Phum_PHUM079850 hypothetical protein; hypothetical protein complement(2340496..2340873) Nitrosomonas sp. AL212 10298889 YP_004295340.1 CDS NAL212_2357 NC_015222.1 2341010 2341918 R PFAM: Aldose 1-epimerase; KEGG: neu:NE1003 aldose 1-epimerase; aldose 1-epimerase complement(2341010..2341918) Nitrosomonas sp. AL212 10298890 YP_004295341.1 CDS NAL212_2358 NC_015222.1 2341955 2343169 R PFAM: ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type; TIGRFAM: Phosphoribosylglycinamide formyltransferase 2; HAMAP: Phosphoribosylglycinamide formyltransferase 2; KEGG: gca:Galf_1708 phosphoribosylglycinamide formyltransferase 2; phosphoribosylglycinamide formyltransferase 2 complement(2341955..2343169) Nitrosomonas sp. AL212 10298891 YP_004295342.1 CDS NAL212_2359 NC_015222.1 2343159 2344235 R KEGG: nmu:Nmul_A2530 4Fe-4S cluster binding; TIGRFAM: 4Fe-4S cluster binding; PFAM: Domain of unknown function DUF1730; 4Fe-4S binding domain; iron-sulfur cluster binding protein complement(2343159..2344235) Nitrosomonas sp. AL212 10298892 YP_004295343.1 CDS NAL212_2360 NC_015222.1 2344275 2344781 D manually curated; TIGRFAM: Uncharacterised protein family UPF0079, ATPase bacteria; KEGG: neu:NE0657 hydrolase; PFAM: Uncharacterised protein family UPF0079, ATPase bacteria; hypothetical protein 2344275..2344781 Nitrosomonas sp. AL212 10298893 YP_004295344.1 CDS NAL212_2361 NC_015222.1 2344745 2346214 D KEGG: net:Neut_1896 N-acetylmuramoyl-L-alanine amidase; PFAM: Cell wall hydrolase/autolysin, catalytic; Localisation of periplasmic protein complexes; SMART: Cell wall hydrolase/autolysin, catalytic; cell wall hydrolase/autolysin 2344745..2346214 Nitrosomonas sp. AL212 10298894 YP_004295345.1 CDS NAL212_2362 NC_015222.1 2346446 2347558 D KEGG: nmu:Nmul_A1981 hypothetical protein; TIGRFAM: Domain of unknown function DUF140; PFAM: Domain of unknown function DUF140; hypothetical protein 2346446..2347558 Nitrosomonas sp. AL212 10298895 YP_004295346.1 CDS NAL212_2363 NC_015222.1 2347563 2348372 D PFAM: ABC transporter-like; KEGG: net:Neut_2235 ABC transporter-related protein; SMART: ATPase, AAA+ type, core; sulfate-transporting ATPase 2347563..2348372 Nitrosomonas sp. AL212 10298896 YP_004295347.1 CDS NAL212_2364 NC_015222.1 2348345 2349241 D PFAM: Mammalian cell entry-related; KEGG: nmu:Nmul_A1983 hypothetical protein; mammalian cell entry domain-containing protein 2348345..2349241 Nitrosomonas sp. AL212 10298897 YP_004295348.1 CDS NAL212_2365 NC_015222.1 2349238 2349864 D PFAM: Protein of unknown function DUF330; KEGG: nmu:Nmul_A1984 putative lipoprotein; hypothetical protein 2349238..2349864 Nitrosomonas sp. AL212 10298898 YP_004295349.1 CDS NAL212_2366 NC_015222.1 2349956 2350090 D KEGG: kko:Kkor_0174 lipoprotein Lppl; hypothetical protein 2349956..2350090 Nitrosomonas sp. AL212 10298899 YP_004295350.1 CDS NAL212_2367 NC_015222.1 2350087 2351340 D TIGRFAM: Diaminopimelate decarboxylase; KEGG: neu:NE1957 Orn/DAP/Arg decarboxylase family protein; PFAM: Orn/DAP/Arg decarboxylase 2, N-terminal; Orn/DAP/Arg decarboxylase 2, C-terminal; diaminopimelate decarboxylase 2350087..2351340 Nitrosomonas sp. AL212 10298900 YP_004295351.1 CDS NAL212_2368 NC_015222.1 2351410 2352468 D PFAM: Squalene/phytoene synthase; KEGG: net:Neut_0403 squalene/phytoene synthase; squalene/phytoene synthase 2351410..2352468 Nitrosomonas sp. AL212 10298901 YP_004295352.1 CDS NAL212_2369 NC_015222.1 2352483 2353472 D KEGG: nmu:Nmul_A2281 NAD-dependent epimerase/dehydratase; TIGRFAM: Hopanoid-associated sugar epimerase; PFAM: NAD-dependent epimerase/dehydratase; hopanoid-associated sugar epimerase 2352483..2353472 Nitrosomonas sp. AL212 10298902 YP_004295353.1 CDS NAL212_2370 NC_015222.1 2353772 2354179 D KEGG: neu:NE1923 response regulator receiver domain-containing protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; response regulator receiver protein 2353772..2354179 Nitrosomonas sp. AL212 10298903 YP_004295354.1 CDS NAL212_2371 NC_015222.1 2354212 2354970 D PFAM: Chemotaxis phosphatase, CheZ; KEGG: gca:Galf_1017 chemotaxis phosphatase, CheZ; chemotaxis phosphatase, CheZ 2354212..2354970 Nitrosomonas sp. AL212 10298904 YP_004295355.1 CDS NAL212_2372 NC_015222.1 2355671 2355898 D KEGG: net:Neut_0952 hypothetical protein; hypothetical protein 2355671..2355898 Nitrosomonas sp. AL212 10298905 YP_004295356.1 CDS NAL212_2373 NC_015222.1 2356314 2357141 D PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal; KEGG: nmu:Nmul_A2296 peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 2356314..2357141 Nitrosomonas sp. AL212 10298906 YP_004295357.1 CDS NAL212_2374 NC_015222.1 2357157 2358662 R KEGG: nde:NIDE1041 carboxypeptidase Taq; PFAM: Peptidase M32, carboxypeptidase Taq metallopeptidase; carboxypeptidase Taq complement(2357157..2358662) Nitrosomonas sp. AL212 10298907 YP_004295358.1 CDS NAL212_2375 NC_015222.1 2358779 2359216 D KEGG: neu:NE1756 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP00701; PFAM: Uncharacterised protein family UPF0093; hypothetical protein 2358779..2359216 Nitrosomonas sp. AL212 10298908 YP_004295359.1 CDS NAL212_2376 NC_015222.1 2359286 2359570 R KEGG: ant:Arnit_1534 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; helix-turn-helix domain-containing protein complement(2359286..2359570) Nitrosomonas sp. AL212 10298909 YP_004295360.1 CDS NAL212_2377 NC_015222.1 2359753 2360025 D KEGG: alv:Alvin_3221 hypothetical protein; hypothetical protein 2359753..2360025 Nitrosomonas sp. AL212 10298910 YP_004295361.1 CDS NAL212_2378 NC_015222.1 2360091 2360492 R KEGG: cta:CTA_0394 aspartate kinase; hypothetical protein complement(2360091..2360492) Nitrosomonas sp. AL212 10298911 YP_004295362.1 CDS NAL212_2379 NC_015222.1 2360583 2360939 D KEGG: neu:NE1553 transposase; transposase 2360583..2360939 Nitrosomonas sp. AL212 10298912 YP_004295363.1 CDS NAL212_2380 NC_015222.1 2360923 2362506 R PFAM: Transposase, IS66; KEGG: gca:Galf_2413 transposase; transposase IS66 complement(2360923..2362506) Nitrosomonas sp. AL212 10298913 YP_004295364.1 CDS NAL212_2381 NC_015222.1 2362560 2362910 R KEGG: eba:ebB55 transposase, fragment; manually curated; PFAM: Transposase (putative), IS66 Orf2-like; IS66 Orf2 family protein complement(2362560..2362910) Nitrosomonas sp. AL212 10298914 YP_004295365.1 CDS NAL212_2382 NC_015222.1 2362898 2363194 R KEGG: dat:HRM2_44620 hypothetical protein; hypothetical protein complement(2362898..2363194) Nitrosomonas sp. AL212 10298915 YP_004295366.1 CDS NAL212_2384 NC_015222.1 2363917 2364369 R SMART: PAC motif; PAS; TIGRFAM: PAS; KEGG: nhl:Nhal_0365 PAS sensor protein; PFAM: PAS fold; PAS sensor protein complement(2363917..2364369) Nitrosomonas sp. AL212 10298917 YP_004295367.1 CDS NAL212_2385 NC_015222.1 2364424 2364903 R PFAM: Polyketide cyclase/dehydrase; KEGG: nmu:Nmul_A1788 hypothetical protein; polyketide cyclase/dehydrase complement(2364424..2364903) Nitrosomonas sp. AL212 10298918 YP_004295368.1 CDS NAL212_2386 NC_015222.1 2364927 2366090 R PFAM: FAD dependent oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; KEGG: net:Neut_0652 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase complement(2364927..2366090) Nitrosomonas sp. AL212 10298919 YP_004295369.1 CDS NAL212_2387 NC_015222.1 2366253 2367146 R TIGRFAM: Glutamyl-Q tRNA(Asp) synthetase; HAMAP: Glutamyl-Q tRNA(Asp) synthetase; KEGG: nmu:Nmul_A0797 glutamate--tRNA ligase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; glutamyl-Q tRNA(Asp) synthetase complement(2366253..2367146) Nitrosomonas sp. AL212 10298920 YP_004295370.1 CDS NAL212_2388 NC_015222.1 2367302 2367622 D PFAM: Transposase IS3/IS911family; KEGG: alv:Alvin_1732 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 2367302..2367622 Nitrosomonas sp. AL212 10298921 YP_004295371.1 CDS NAL212_2389 NC_015222.1 2367622 2368521 D PFAM: Integrase, catalytic core; KEGG: pde:Pden_3846 integrase catalytic subunit; integrase catalytic region 2367622..2368521 Nitrosomonas sp. AL212 10298922 YP_004295372.1 CDS NAL212_2390 NC_015222.1 2368604 2369998 D TIGRFAM: Murein peptide ligase; KEGG: slt:Slit_0052 UDP-N-acetylmuramate; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; UDP-N-acetylmuramate 2368604..2369998 Nitrosomonas sp. AL212 10298923 YP_004295373.1 CDS NAL212_2391 NC_015222.1 2370037 2370564 R KEGG: nmu:Nmul_A0935 adenine phosphoribosyltransferase; TIGRFAM: Adenine phosphoribosyl transferase; PFAM: Phosphoribosyltransferase; adenine phosphoribosyltransferase complement(2370037..2370564) Nitrosomonas sp. AL212 10298924 YP_004295374.1 CDS NAL212_2392 NC_015222.1 2370683 2371783 R TIGRFAM: Nitrite reductase, copper containing; KEGG: rpa:RPA3306 nitrite reductase, major outer membrane copper-containing protein; PFAM: Multicopper oxidase, type 1; Multicopper oxidase, type 3; nitrite reductase complement(2370683..2371783) Nitrosomonas sp. AL212 10298925 YP_004295375.1 CDS NAL212_2393 NC_015222.1 2372529 2373824 D KEGG: neu:NE1294 putative glutamate--cysteine ligase; TIGRFAM: Glutamate--cysteine ligase GshA; PFAM: Glutamate--cysteine ligase GshA; glutamate/cysteine ligase 2372529..2373824 Nitrosomonas sp. AL212 10298926 YP_004295376.1 CDS NAL212_2394 NC_015222.1 2373833 2374819 D TIGRFAM: Glutathione synthetase, prokaryotic; KEGG: neu:NE1295 glutathione synthetase; PFAM: Prokaryotic glutathione synthetase, ATP-binding; Prokaryotic glutathione synthetase, N-terminal; glutathione synthetase 2373833..2374819 Nitrosomonas sp. AL212 10298927 YP_004295377.1 CDS NAL212_2395 NC_015222.1 2374978 2375898 D PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; KEGG: pat:Patl_1023 peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase 2374978..2375898 Nitrosomonas sp. AL212 10298928 YP_004295378.1 CDS NAL212_2396 NC_015222.1 2375945 2377786 R SMART: ATPase, AAA+ type, core; TIGRFAM: Peptidase M41, FtsH; KEGG: nmu:Nmul_A1798 ATP-dependent metalloprotease FtsH; PFAM: Peptidase M41; ATPase, AAA-type, core; Peptidase M41, FtsH extracellular; ATP-dependent metalloprotease FtsH complement(2375945..2377786) Nitrosomonas sp. AL212 10298929 YP_004295379.1 CDS NAL212_2397 NC_015222.1 2377908 2379257 R PFAM: Membrane protein, aromatic hydrocarbon degradation; KEGG: mfa:Mfla_2658 aromatic hydrocarbon degradation membrane protein; aromatic hydrocarbon degradation membrane protein complement(2377908..2379257) Nitrosomonas sp. AL212 10298930 YP_004295380.1 CDS NAL212_2398 NC_015222.1 2379606 2382002 D TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS fold; KEGG: noc:Noc_2021 PAS sensor diguanylate cyclase/phophodiesterase; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2379606..2382002 Nitrosomonas sp. AL212 10298931 YP_004295381.1 CDS NAL212_2399 NC_015222.1 2382135 2382872 R PFAM: Cyclic nucleotide-binding domain; KEGG: bxe:Bxe_B1519 Crp/FNR family transcriptional regulator; CarD family transcriptional regulator complement(2382135..2382872) Nitrosomonas sp. AL212 10298932 YP_004295382.1 CDS NAL212_2401 NC_015222.1 2383739 2385046 D PFAM: Transposase, IS4-like; KEGG: dde:Dde_2849 ISPg7, transposase; transposase IS4 family protein 2383739..2385046 Nitrosomonas sp. AL212 10298934 YP_004295383.1 CDS NAL212_2404 NC_015222.1 2386070 2387653 R PFAM: Transposase, IS66; KEGG: gca:Galf_2413 transposase; transposase IS66 complement(2386070..2387653) Nitrosomonas sp. AL212 10298937 YP_004295384.1 CDS NAL212_2405 NC_015222.1 2387707 2388078 R PFAM: Transposase (putative), IS66 Orf2-like; KEGG: eba:ebB55 transposase, fragment; IS66 Orf2 family protein complement(2387707..2388078) Nitrosomonas sp. AL212 10298938 YP_004295385.1 CDS NAL212_2406 NC_015222.1 2388045 2388341 R KEGG: dat:HRM2_44620 hypothetical protein; hypothetical protein complement(2388045..2388341) Nitrosomonas sp. AL212 10298939 YP_004295386.1 CDS NAL212_2408 NC_015222.1 2388982 2389875 R KEGG: ppr:PBPRB1378 hypothetical protein; hypothetical protein complement(2388982..2389875) Nitrosomonas sp. AL212 10298941 YP_004295387.1 CDS NAL212_2409 NC_015222.1 2390031 2390564 R TIGRFAM: Formylmethionine deformylase; KEGG: mfa:Mfla_1466 peptide deformylase; PFAM: Formylmethionine deformylase; peptide deformylase complement(2390031..2390564) Nitrosomonas sp. AL212 10298942 YP_004295388.1 CDS NAL212_2410 NC_015222.1 2390554 2391300 R KEGG: nmu:Nmul_A0650 5'-methylthioadenosine phosphorylase; PFAM: Nucleoside phosphorylase domain; S-methyl-5'-thioadenosine phosphorylase complement(2390554..2391300) Nitrosomonas sp. AL212 10298943 YP_004295389.1 CDS NAL212_2411 NC_015222.1 2391320 2391865 R PFAM: Phosphoribosyltransferase; KEGG: nmu:Nmul_A0649 hypoxanthine-guanine phosphoribosyltransferase; phosphoribosyltransferase complement(2391320..2391865) Nitrosomonas sp. AL212 10298944 YP_004295390.1 CDS NAL212_2412 NC_015222.1 2391873 2393906 R TIGRFAM: NAD-dependent DNA ligase; PFAM: NAD-dependent DNA ligase, adenylation; Zinc-finger, NAD-dependent DNA ligase C4-type; BRCT; NAD-dependent DNA ligase, OB-fold; KEGG: nmu:Nmul_A0647 DNA ligase, NAD-dependent; SMART: NAD-dependent DNA ligase, N-terminal; Helix-hairpin-helix DNA-binding motif, class 1; BRCT; NAD-dependent DNA ligase complement(2391873..2393906) Nitrosomonas sp. AL212 10298945 YP_004295391.1 CDS NAL212_2413 NC_015222.1 2394028 2394852 D PFAM: Protein of unknown function DUF2914; KEGG: neu:NE1157 hypothetical protein; hypothetical protein 2394028..2394852 Nitrosomonas sp. AL212 10298946 YP_004295392.1 CDS NAL212_2414 NC_015222.1 2394891 2395436 D PFAM: NUDIX hydrolase domain; KEGG: net:Neut_1448 NUDIX hydrolase; NUDIX hydrolase 2394891..2395436 Nitrosomonas sp. AL212 10298947 YP_004295393.1 CDS NAL212_2415 NC_015222.1 2395458 2396237 D KEGG: pin:Ping_0586 hypothetical protein; hypothetical protein 2395458..2396237 Nitrosomonas sp. AL212 10298948 YP_004295394.1 CDS NAL212_2416 NC_015222.1 2396320 2397477 D KEGG: reu:Reut_A2245 hypothetical protein; TIGRFAM: Uncharacterised conserved protein UCP015557; PFAM: Uncharacterised conserved protein UCP015557; hypothetical protein 2396320..2397477 Nitrosomonas sp. AL212 10298949 YP_004295395.1 CDS NAL212_2417 NC_015222.1 2397556 2398119 D TIGRFAM: Translation elongation factor P; PFAM: Elongation factor P, C-terminal; Translation elongation factor, KOW-like; Translation elongation factor P/YeiP, central; KEGG: cvi:CV_1378 elongation factor P; SMART: Elongation factor P, C-terminal; translation elongation factor P 2397556..2398119 Nitrosomonas sp. AL212 10298950 YP_004295396.1 CDS NAL212_2418 NC_015222.1 2398170 2398730 R KEGG: nmu:Nmul_A0701 nitrogen-fixing NifU-like; PFAM: NIF system FeS cluster assembly, NifU-like scaffold, N-terminal; NIF system FeS cluster assembly, NifU, C-terminal; SMART: NIF system FeS cluster assembly, NifU-like scaffold, N-terminal; Scaffold protein Nfu/NifU complement(2398170..2398730) Nitrosomonas sp. AL212 10298951 YP_004295397.1 CDS NAL212_2419 NC_015222.1 2398816 2399304 R KEGG: nmu:Nmul_A0700 SUF system FeS assembly protein; TIGRFAM: SUF system FeS cluster assembly, SufU scaffold; PFAM: NIF system FeS cluster assembly, NifU, N-terminal; NifU family SUF system FeS assembly protein complement(2398816..2399304) Nitrosomonas sp. AL212 10298952 YP_004295398.1 CDS NAL212_2420 NC_015222.1 2399304 2400563 R TIGRFAM: Cysteine desulfurase, SufS; KEGG: nmu:Nmul_A0699 SufS subfamily cysteine desulfurase; PFAM: Aminotransferase, class V/Cysteine desulfurase; SufS subfamily cysteine desulfurase complement(2399304..2400563) Nitrosomonas sp. AL212 10298953 YP_004295399.1 CDS NAL212_2421 NC_015222.1 2400560 2401867 R KEGG: nmu:Nmul_A0698 FeS assembly protein SufD; TIGRFAM: SUF system FeS cluster assembly, SufD; PFAM: SUF system FeS cluster assembly, SufBD; FeS assembly protein SufD complement(2400560..2401867) Nitrosomonas sp. AL212 10298954 YP_004295400.1 CDS NAL212_2422 NC_015222.1 2401864 2402658 R TIGRFAM: ATPase SufC, SUF system FeS cluster assembly; PFAM: ABC transporter-like; KEGG: net:Neut_1240 FeS assembly ATPase SufC; SMART: ATPase, AAA+ type, core; FeS assembly ATPase SufC complement(2401864..2402658) Nitrosomonas sp. AL212 10298955 YP_004295401.1 CDS NAL212_2423 NC_015222.1 2402655 2404091 R KEGG: nmu:Nmul_A0696 cysteine desulfurase activator complex subunit SufB; TIGRFAM: SUF system FeS cluster assembly, SufB; PFAM: SUF system FeS cluster assembly, SufBD; FeS assembly protein SufB complement(2402655..2404091) Nitrosomonas sp. AL212 10298956 YP_004295402.1 CDS NAL212_2424 NC_015222.1 2404221 2404556 R KEGG: nmu:Nmul_A0695 HesB/YadR/YfhF; TIGRFAM: FeS cluster insertion; PFAM: FeS cluster biogenesis; iron-sulfur cluster assembly accessory protein complement(2404221..2404556) Nitrosomonas sp. AL212 10298957 YP_004295403.1 CDS NAL212_2425 NC_015222.1 2404705 2405193 R KEGG: nmu:Nmul_A0694 BadM/Rrf2 family transcriptional regulator; TIGRFAM: Transcription regulator Rrf2; PFAM: Transcription regulator Rrf2; asnc family transcriptional regulator complement(2404705..2405193) Nitrosomonas sp. AL212 10298958 YP_004295404.1 CDS NAL212_2426 NC_015222.1 2405330 2405440 R hypothetical protein complement(2405330..2405440) Nitrosomonas sp. AL212 10298959 YP_004295405.1 CDS NAL212_2427 NC_015222.1 2405430 2406329 R PFAM: Integrase, catalytic core; KEGG: pde:Pden_3846 integrase catalytic subunit; integrase catalytic region complement(2405430..2406329) Nitrosomonas sp. AL212 10298960 YP_004295406.1 CDS NAL212_2428 NC_015222.1 2406329 2406649 R PFAM: Transposase IS3/IS911family; KEGG: alv:Alvin_1732 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein complement(2406329..2406649) Nitrosomonas sp. AL212 10298961 YP_004295407.1 CDS NAL212_2430 NC_015222.1 2406960 2407781 D KEGG: atu:Atu4861 IS21 family transposase; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; IstB domain-containing protein ATP-binding protein 2406960..2407781 Nitrosomonas sp. AL212 10298963 YP_004295408.1 CDS NAL212_2431 NC_015222.1 2408068 2408637 D KEGG: bpr:GBP346_A2062 hemagglutinin family protein; hypothetical protein 2408068..2408637 Nitrosomonas sp. AL212 10298964 YP_004295409.1 CDS NAL212_2432 NC_015222.1 2408713 2409336 R KEGG: ddi:DDB_G0277915 Ras guanine nucleotide exchange factor; hypothetical protein complement(2408713..2409336) Nitrosomonas sp. AL212 10298965 YP_004295410.1 CDS NAL212_2433 NC_015222.1 2409655 2409810 D hypothetical protein 2409655..2409810 Nitrosomonas sp. AL212 10298966 YP_004295411.1 CDS NAL212_2434 NC_015222.1 2409838 2410089 D KEGG: pbe:PB301139.00.0 hypothetical protein; hypothetical protein 2409838..2410089 Nitrosomonas sp. AL212 10298967 YP_004295412.1 CDS NAL212_2435 NC_015222.1 2410297 2411277 D PFAM: Transposase, IS4-like; KEGG: atu:Atu4436 IS5 family transposase; transposase IS4 family protein 2410297..2411277 Nitrosomonas sp. AL212 10298968 YP_004295413.1 CDS NAL212_2436 NC_015222.1 2411378 2412235 D manually curated; KEGG: rxy:Rxyl_2225 integrase catalytic subunit; integrase catalytic subunit 2411378..2412235 Nitrosomonas sp. AL212 10298969 YP_004295414.1 CDS NAL212_2437 NC_015222.1 2412373 2413446 R PFAM: Transposase, IS4-like; KEGG: dia:Dtpsy_3344 transposase IS4 family protein; transposase IS4 family protein complement(2412373..2413446) Nitrosomonas sp. AL212 10298970 YP_004295415.1 CDS NAL212_2441 NC_015222.1 2414566 2415465 R PFAM: Integrase, catalytic core; KEGG: pde:Pden_3846 integrase catalytic subunit; integrase catalytic region complement(2414566..2415465) Nitrosomonas sp. AL212 10298974 YP_004295416.1 CDS NAL212_2442 NC_015222.1 2415465 2415785 R PFAM: Transposase IS3/IS911family; KEGG: alv:Alvin_1732 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein complement(2415465..2415785) Nitrosomonas sp. AL212 10298975 YP_004295417.1 CDS NAL212_2444 NC_015222.1 2416212 2417030 D manually curated; PFAM: IstB-like ATP-binding protein; KEGG: tmz:Tmz1t_3172 IstB domain protein ATP-binding protein; SMART: ATPase, AAA+ type, core; IstB domain-containing protein ATP-binding protein 2416212..2417030 Nitrosomonas sp. AL212 10298977 YP_004295418.1 CDS NAL212_2445 NC_015222.1 2417249 2418334 R PFAM: Transposase, IS116/IS110/IS902; KEGG: ecp:ECP_4551 putative transposase; transposase IS116/IS110/IS902 family protein complement(2417249..2418334) Nitrosomonas sp. AL212 10298978 YP_004295419.1 CDS NAL212_2446 NC_015222.1 2418447 2419346 R PFAM: Integrase, catalytic core; KEGG: pde:Pden_3846 integrase catalytic subunit; integrase catalytic region complement(2418447..2419346) Nitrosomonas sp. AL212 10298979 YP_004295420.1 CDS NAL212_2447 NC_015222.1 2419346 2419666 R PFAM: Transposase IS3/IS911family; KEGG: alv:Alvin_1732 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein complement(2419346..2419666) Nitrosomonas sp. AL212 10298980 YP_004295421.1 CDS NAL212_2449 NC_015222.1 2420417 2421571 D PFAM: Integrase, catalytic core; KEGG: bac:BamMC406_6587 integrase catalytic region; integrase catalytic region 2420417..2421571 Nitrosomonas sp. AL212 10298982 YP_004295422.1 CDS NAL212_2451 NC_015222.1 2422039 2422251 R KEGG: gur:Gura_3602 helix-turn-helix domain-containing protein; hypothetical protein complement(2422039..2422251) Nitrosomonas sp. AL212 10298984 YP_004295423.1 CDS NAL212_2452 NC_015222.1 2422299 2422607 R KEGG: neu:NE0189 helix-hairpin-helix DNA-binding motif-containing protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; XRE family transcriptional regulator complement(2422299..2422607) Nitrosomonas sp. AL212 10298985 YP_004295424.1 CDS NAL212_2453 NC_015222.1 2422598 2422912 R KEGG: noc:Noc_0284 hypothetical protein; hypothetical protein complement(2422598..2422912) Nitrosomonas sp. AL212 10298986 YP_004295425.1 CDS NAL212_2454 NC_015222.1 2422854 2423993 R PFAM: Integrase, catalytic core, phage; KEGG: lpf:lpl0065 hypothetical protein; integrase family protein complement(2422854..2423993) Nitrosomonas sp. AL212 10298987 YP_004295426.1 CDS NAL212_2455 NC_015222.1 2424171 2424410 D KEGG: bam:Bamb_4189 plasmid stability protein-like protein; plasmid stability protein-like protein 2424171..2424410 Nitrosomonas sp. AL212 10298988 YP_004295427.1 CDS NAL212_2456 NC_015222.1 2424407 2424826 D PFAM: PilT protein, N-terminal; KEGG: reu:Reut_A3455 PilT protein, N-terminal; PilT protein domain-containing protein 2424407..2424826 Nitrosomonas sp. AL212 10298989 YP_004295428.1 CDS NAL212_2458 NC_015222.1 2426248 2427144 D KEGG: neu:NE1876 coproporphyrinogen III oxidase; PFAM: Coproporphyrinogen III oxidase; coproporphyrinogen oxidase 2426248..2427144 Nitrosomonas sp. AL212 10298991 YP_004295429.1 CDS NAL212_2459 NC_015222.1 2427152 2428399 D PFAM: Sodium:dicarboxylate symporter; KEGG: nmu:Nmul_A0633 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 2427152..2428399 Nitrosomonas sp. AL212 10298992 YP_004295430.1 CDS NAL212_2460 NC_015222.1 2428419 2429567 R KEGG: nmu:Nmul_A1663 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD domain; metal dependent phosphohydrolase complement(2428419..2429567) Nitrosomonas sp. AL212 10298993 YP_004295431.1 CDS NAL212_2461 NC_015222.1 2429941 2430807 D PFAM: RIO-like kinase; KEGG: gur:Gura_1606 protein of unknown function RIO1; RIO-like kinase 2429941..2430807 Nitrosomonas sp. AL212 10298994 YP_004295432.1 CDS NAL212_2462 NC_015222.1 2430922 2432739 R KEGG: gdi:GDI_0967 putative resolvase; PFAM: Recombinase; Resolvase, N-terminal; SMART: Resolvase, N-terminal; recombinase complement(2430922..2432739) Nitrosomonas sp. AL212 10298996 YP_004295433.1 CDS NAL212_2463 NC_015222.1 2433110 2433376 R KEGG: nha:Nham_0588 hypothetical protein; hypothetical protein complement(2433110..2433376) Nitrosomonas sp. AL212 10298997 YP_004295434.1 CDS NAL212_2464 NC_015222.1 2433373 2433636 R KEGG: aci:ACIAD1868 putative nucleoprotein/polynucleotide-associated enzyme; hypothetical protein complement(2433373..2433636) Nitrosomonas sp. AL212 10298998 YP_004295435.1 CDS NAL212_2465 NC_015222.1 2433647 2434129 R KEGG: pla:Plav_1628 hypothetical protein; hypothetical protein complement(2433647..2434129) Nitrosomonas sp. AL212 10298999 YP_004295436.1 CDS NAL212_2466 NC_015222.1 2434299 2435279 R PFAM: Transposase, IS4-like; KEGG: atu:Atu4436 IS5 family transposase; transposase IS4 family protein complement(2434299..2435279) Nitrosomonas sp. AL212 10299000 YP_004295437.1 CDS NAL212_2467 NC_015222.1 2435318 2435473 R hypothetical protein complement(2435318..2435473) Nitrosomonas sp. AL212 10299001 YP_004295438.1 CDS NAL212_2469 NC_015222.1 2435877 2437031 R PFAM: Integrase, catalytic core; KEGG: bac:BamMC406_6587 integrase catalytic region; integrase catalytic region complement(2435877..2437031) Nitrosomonas sp. AL212 10299003 YP_004295439.1 CDS NAL212_2470 NC_015222.1 2437138 2438037 D PFAM: Integrase, catalytic core; KEGG: pde:Pden_3846 integrase catalytic subunit; integrase catalytic region 2437138..2438037 Nitrosomonas sp. AL212 10299004 YP_004295440.1 CDS NAL212_2471 NC_015222.1 2438079 2438471 D manually curated; KEGG: llo:LLO_2896 TraM protein; hypothetical protein 2438079..2438471 Nitrosomonas sp. AL212 10299005 YP_004295441.1 CDS NAL212_2472 NC_015222.1 2438502 2438831 D KEGG: afr:AFE_0996 DNA binding protein, excisionase family; DNA binding protein, excisionase family 2438502..2438831 Nitrosomonas sp. AL212 10299006 YP_004295442.1 CDS NAL212_2474 NC_015222.1 2439151 2439933 R KEGG: pst:PSPTO_B0039 transposase/IS protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; IstB domain-containing protein ATP-binding protein complement(2439151..2439933) Nitrosomonas sp. AL212 10299008 YP_004295443.1 CDS NAL212_2475 NC_015222.1 2439930 2440952 R PFAM: Integrase, catalytic core; Resolvase, helix-turn-helix domain; KEGG: pst:PSPTO_B0040 ISPsy4, transposase; integrase catalytic region complement(2439930..2440952) Nitrosomonas sp. AL212 10299009 YP_004295444.1 CDS NAL212_2476 NC_015222.1 2441058 2441708 D PFAM: Integrase, catalytic core, phage; KEGG: afr:AFE_0995 site-specific recombinase, phage integrase family; integrase family protein 2441058..2441708 Nitrosomonas sp. AL212 10299010 YP_004295445.1 CDS NAL212_2477 NC_015222.1 2441859 2442281 R PFAM: Stringent starvation protein B; KEGG: rsc:RCFBP_10526 stringent starvation protein B, ClpXP protease specificity-enhancing factor; stringent starvation protein B complement(2441859..2442281) Nitrosomonas sp. AL212 10299012 YP_004295446.1 CDS NAL212_2478 NC_015222.1 2442278 2442877 R PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: neu:NE0812 transcription modulator protein; glutathione S-transferase domain-containing protein complement(2442278..2442877) Nitrosomonas sp. AL212 10299013 YP_004295447.1 CDS NAL212_2479 NC_015222.1 2442927 2443640 R PFAM: Cytochrome c1; KEGG: net:Neut_1112 cytochrome c1; cytochrome c1 complement(2442927..2443640) Nitrosomonas sp. AL212 10299014 YP_004295448.1 CDS NAL212_2480 NC_015222.1 2443645 2444892 R PFAM: Cytochrome b/b6, C-terminal; Cytochrome b/b6, N-terminal; KEGG: neu:NE0810 cytochrome b/b6; cytochrome b/b6 domain complement(2443645..2444892) Nitrosomonas sp. AL212 10299015 YP_004295449.1 CDS NAL212_2481 NC_015222.1 2444893 2445504 R TIGRFAM: Ubiquinol-cytochrome c reductase, iron-sulphur subunit; KEGG: nmu:Nmul_A1005 ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] iron-sulphur domain; Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal; ubiquinol-cytochrome c reductase, iron-sulfur subunit complement(2444893..2445504) Nitrosomonas sp. AL212 10299016 YP_004295450.1 CDS NAL212_2482 NC_015222.1 2445722 2448454 R TIGRFAM: SecA protein; PFAM: SecA DEAD-like, N-terminal; SEC-C motif; SecA preprotein, cross-linking domain; SecA Wing/Scaffold; KEGG: nmu:Nmul_A2485 preprotein translocase subunit SecA; SMART: SecA DEAD-like, N-terminal; SecA preprotein, cross-linking domain; Preprotein translocase subunit SecA complement(2445722..2448454) Nitrosomonas sp. AL212 10299017 YP_004295451.1 CDS NAL212_2483 NC_015222.1 2448676 2449599 R PFAM: Peptidase M23; KEGG: nmu:Nmul_A2486 peptidase M23B; peptidase M23 complement(2448676..2449599) Nitrosomonas sp. AL212 10299018 YP_004295452.1 CDS NAL212_2484 NC_015222.1 2449633 2450124 D PFAM: Protein of unknown function DUF721/UPF0232; KEGG: nmu:Nmul_A2487 hypothetical protein; hypothetical protein 2449633..2450124 Nitrosomonas sp. AL212 10299019 YP_004295453.1 CDS NAL212_2486 NC_015222.1 2450515 2451408 D KEGG: ppr:PBPRB1378 hypothetical protein; hypothetical protein 2450515..2451408 Nitrosomonas sp. AL212 10299021 YP_004295454.1 CDS NAL212_2487 NC_015222.1 2451746 2453602 D KEGG: net:Neut_0498 ribonuclease II; PFAM: Ribonuclease II/R; SMART: Ribonuclease II/R; ribonuclease II 2451746..2453602 Nitrosomonas sp. AL212 10299022 YP_004295455.1 CDS NAL212_2488 NC_015222.1 2453749 2454636 D TIGRFAM: TonB, C-terminal; KEGG: neu:NE1626 putative TonB protein; TonB family protein 2453749..2454636 Nitrosomonas sp. AL212 10299023 YP_004295456.1 CDS NAL212_2489 NC_015222.1 2454696 2455514 D KEGG: nmu:Nmul_A0538 shikimate 5-dehydrogenase; TIGRFAM: Shikimate dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; shikimate 5-dehydrogenase 2454696..2455514 Nitrosomonas sp. AL212 10299024 YP_004295457.1 CDS NAL212_2490 NC_015222.1 2455722 2457161 D TIGRFAM: Divalent cation transporter; PFAM: Magnesium transporter, MgtE intracellular domain; Cystathionine beta-synthase, core; MgtE magnesium transporter, integral membrane; KEGG: neu:NE1633 divalent cation transporter; SMART: Magnesium transporter, MgtE intracellular domain; Cystathionine beta-synthase, core; magnesium transporter 2455722..2457161 Nitrosomonas sp. AL212 10299025 YP_004295458.1 CDS NAL212_2491 NC_015222.1 2457257 2458513 R PFAM: Glycosyl transferase, family 8; KEGG: eba:ebA1583 hypothetical protein; glycosyl transferase family protein complement(2457257..2458513) Nitrosomonas sp. AL212 10299026 YP_004295459.1 CDS NAL212_2492 NC_015222.1 2458521 2460146 R PFAM: Glycosyl transferase, group 1; KEGG: dsh:Dshi_4121 glycosyl transferase family protein; group 1 glycosyl transferase complement(2458521..2460146) Nitrosomonas sp. AL212 10299027 YP_004295460.1 CDS NAL212_2493 NC_015222.1 2460139 2462127 R PFAM: Methyltransferase type 12; KEGG: neu:NE0484 hypothetical protein; type 12 methyltransferase complement(2460139..2462127) Nitrosomonas sp. AL212 10299028 YP_004295461.1 CDS NAL212_2494 NC_015222.1 2462127 2463470 R PFAM: ABC transporter-like; KEGG: neu:NE0483 polysaccharide ABC transporter ATPase; SMART: ATPase, AAA+ type, core; teichoic-acid-transporting AtPase complement(2462127..2463470) Nitrosomonas sp. AL212 10299029 YP_004295462.1 CDS NAL212_2495 NC_015222.1 2463460 2464287 R PFAM: ABC-2 type transporter; KEGG: mes:Meso_3693 ABC-2 type transporter; ABC transporter complement(2463460..2464287) Nitrosomonas sp. AL212 10299030 YP_004295463.1 CDS NAL212_2496 NC_015222.1 2464331 2464510 D KEGG: tps:THAPSDRAFT_12125 hypothetical protein; hypothetical protein 2464331..2464510 Nitrosomonas sp. AL212 10299031 YP_004295464.1 CDS NAL212_2497 NC_015222.1 2464880 2465068 D manually curated; KEGG: xop:PXO_04569 putative transposase; putative transposase 2464880..2465068 Nitrosomonas sp. AL212 10299032 YP_004295465.1 CDS NAL212_2498 NC_015222.1 2465188 2466489 R KEGG: nmu:Nmul_A2758 major facilitator transporter; major facilitator transporter complement(2465188..2466489) Nitrosomonas sp. AL212 10299033 YP_004295466.1 CDS NAL212_2499 NC_015222.1 2466523 2467908 R TIGRFAM: Fumarate hydratase, class II; KEGG: nmu:Nmul_A2471 fumarate hydratase; PFAM: Lyase 1, N-terminal; Fumarase C, C-terminal; class II fumarate hydratase complement(2466523..2467908) Nitrosomonas sp. AL212 10299034 YP_004295467.1 CDS NAL212_2500 NC_015222.1 2468358 2468690 R KEGG: net:Neut_1998 transcriptional regulator, XRE family protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; helix-turn-helix domain-containing protein complement(2468358..2468690) Nitrosomonas sp. AL212 10299035 YP_004295468.1 CDS NAL212_2501 NC_015222.1 2468674 2468931 R PFAM: Plasmid stabilisation system; KEGG: nhl:Nhal_1008 phage protein; plasmid stabilization system complement(2468674..2468931) Nitrosomonas sp. AL212 10299036 YP_004295469.1 CDS NAL212_2502 NC_015222.1 2468995 2469099 R KEGG: aci:ACIAD1890 fumarate hydratase; fumarate hydratase complement(2468995..2469099) Nitrosomonas sp. AL212 10299037 YP_004295470.1 CDS NAL212_2503 NC_015222.1 2469258 2469614 R KEGG: cja:CJA_0812 hypothetical protein; hypothetical protein complement(2469258..2469614) Nitrosomonas sp. AL212 10299038 YP_004295471.1 CDS NAL212_2504 NC_015222.1 2469618 2470208 R KEGG: swd:Swoo_4501 hypothetical protein; hypothetical protein complement(2469618..2470208) Nitrosomonas sp. AL212 10299039 YP_004295472.1 CDS NAL212_2505 NC_015222.1 2470299 2471444 R KEGG: nmu:Nmul_A2469 ribonucleotide-diphosphate reductase subunit beta; PFAM: Ribonucleotide reductase; ribonucleoside-diphosphate reductase complement(2470299..2471444) Nitrosomonas sp. AL212 10299040 YP_004295473.1 CDS NAL212_2506 NC_015222.1 2471474 2474338 R KEGG: nmu:Nmul_A2468 ribonucleotide-diphosphate reductase subunit alpha; TIGRFAM: Ribonucleoside-diphosphate reductase, alpha subunit; PFAM: Ribonucleotide reductase large subunit, C-terminal; Ribonucleotide reductase large subunit, N-terminal; ATP-cone; ribonucleoside-diphosphate reductase subunit alpha complement(2471474..2474338) Nitrosomonas sp. AL212 10299041 YP_004295474.1 CDS NAL212_2507 NC_015222.1 2474702 2475145 R PFAM: Protein of unknown function DUF188; KEGG: tgr:Tgr7_2584 protein of unknown function DUF188; hypothetical protein complement(2474702..2475145) Nitrosomonas sp. AL212 10299042 YP_004295475.1 CDS NAL212_2508 NC_015222.1 2475166 2475759 R TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; KEGG: neu:NE2127 CDP-diacylglycerol--glycerol-3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase complement(2475166..2475759) Nitrosomonas sp. AL212 10299043 YP_004295476.1 CDS NAL212_2509 NC_015222.1 2475792 2477609 R KEGG: nmu:Nmul_A1271 excinuclease ABC subunit C; PFAM: Excinuclease ABC, C subunit, C-terminal; Excinuclease ABC, C subunit, N-terminal; UvrB/UvrC protein; Helix-hairpin-helix motif; manually curated; TIGRFAM: Excinuclease ABC, C subunit; SMART: Excinuclease ABC, C subunit, N-terminal; Helix-hairpin-helix DNA-binding motif, class 1; HAMAP: Excinuclease ABC, C subunit; UvrABC system protein C complement(2475792..2477609) Nitrosomonas sp. AL212 10299044 YP_004295477.1 CDS NAL212_2510 NC_015222.1 2477615 2477803 R PFAM: 4-oxalocrotonate tautomerase; KEGG: neu:NE0932 putative isomerase; 4-oxalocrotonate tautomerase complement(2477615..2477803) Nitrosomonas sp. AL212 10299045 YP_004295478.1 CDS NAL212_2511 NC_015222.1 2477829 2478503 R PFAM: Uracil-DNA glycosylase-like; KEGG: net:Neut_1410 uracil-DNA glycosylase superfamily protein; uracil-DNA glycosylase superfamily protein complement(2477829..2478503) Nitrosomonas sp. AL212 10299046 YP_004295479.1 CDS NAL212_2512 NC_015222.1 2479345 2479938 R PFAM: CDP-alcohol phosphatidyltransferase; KEGG: sun:SUN_1448 phosphatidylglycerophosphate synthase; CDP-alcohol phosphatidyltransferase complement(2479345..2479938) Nitrosomonas sp. AL212 10299050 YP_004295480.1 CDS NAL212_2513 NC_015222.1 2479954 2480442 R PFAM: Uncharacterised protein family UPF0290; KEGG: hch:HCH_02040 CDP-diglyceride synthetase; hypothetical protein complement(2479954..2480442) Nitrosomonas sp. AL212 10299051 YP_004295481.1 CDS NAL212_2514 NC_015222.1 2480513 2481265 D PFAM: Endonuclease/exonuclease/phosphatase; KEGG: nmu:Nmul_A0606 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 2480513..2481265 Nitrosomonas sp. AL212 10299052 YP_004295482.1 CDS NAL212_2515 NC_015222.1 2481268 2483682 R SMART: Peptidase S16, lon N-terminal; ATPase, AAA+ type, core; TIGRFAM: Peptidase S16, ATP-dependent protease La; KEGG: nmu:Nmul_A2338 ATP-dependent protease La; PFAM: Peptidase S16, Lon C-terminal; ATPase, AAA-type, core; Peptidase S16, lon N-terminal; anti-sigma H sporulation factor LonB complement(2481268..2483682) Nitrosomonas sp. AL212 10299053 YP_004295483.1 CDS NAL212_2516 NC_015222.1 2483822 2485099 R TIGRFAM: Clp protease, ATP-binding subunit ClpX; PFAM: ATPase, AAA-2; Clp ATPase, C-terminal; Zinc finger, C4-type; KEGG: nmu:Nmul_A2339 ATP-dependent protease ATP-binding subunit ClpX; SMART: ATPase, AAA+ type, core; ATP-dependent Clp protease ATP-binding subunit ClpX complement(2483822..2485099) Nitrosomonas sp. AL212 10299054 YP_004295484.1 CDS NAL212_2517 NC_015222.1 2485164 2485805 R TIGRFAM: Peptidase S14, ClpP; KEGG: nmu:Nmul_A2340 ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: Peptidase S14, ClpP; ATP-dependent Clp protease, proteolytic subunit ClpP complement(2485164..2485805) Nitrosomonas sp. AL212 10299055 YP_004295485.1 CDS NAL212_2518 NC_015222.1 2485807 2487111 R KEGG: nmu:Nmul_A2341 trigger factor; TIGRFAM: Trigger factor; PFAM: Trigger factor, ribosome-binding, bacterial; Trigger factor, C-terminal, bacterial; Peptidyl-prolyl cis-trans isomerase, FKBP-type; trigger factor complement(2485807..2487111) Nitrosomonas sp. AL212 10299056 YP_004295486.1 CDS NAL212_2519 NC_015222.1 2487365 2488111 R PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: nmu:Nmul_A2342 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(2487365..2488111) Nitrosomonas sp. AL212 10299058 YP_004295487.1 CDS NAL212_2520 NC_015222.1 2488266 2489915 R KEGG: nmu:Nmul_A2344 chaperonin GroEL; TIGRFAM: Chaperonin Cpn60; PFAM: Chaperonin Cpn60/TCP-1; chaperonin GroEL complement(2488266..2489915) Nitrosomonas sp. AL212 10299059 YP_004295488.1 CDS NAL212_2521 NC_015222.1 2489969 2490259 R KEGG: nmu:Nmul_A2345 co-chaperonin GroES; PFAM: Chaperonin Cpn10; SMART: Chaperonin Cpn10; chaperonin Cpn10 complement(2489969..2490259) Nitrosomonas sp. AL212 10299060 YP_004295489.1 CDS NAL212_2522 NC_015222.1 2490608 2490907 D PFAM: Transposase IS3/IS911family; KEGG: rms:RMA_0745 transposase; transposase IS3/IS911 family protein 2490608..2490907 Nitrosomonas sp. AL212 10299061 YP_004295490.1 CDS NAL212_2523 NC_015222.1 2490939 2492093 D PFAM: Integrase, catalytic core; KEGG: bac:BamMC406_6587 integrase catalytic region; integrase catalytic region 2490939..2492093 Nitrosomonas sp. AL212 10299062 YP_004295491.1 CDS NAL212_2524 NC_015222.1 2492135 2492998 D PFAM: Integrase, catalytic core; KEGG: net:Neut_2192 integrase catalytic subunit; integrase catalytic region 2492135..2492998 Nitrosomonas sp. AL212 10299063 YP_004295492.1 CDS NAL212_2526 NC_015222.1 2493404 2494024 D PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: mmb:Mmol_0462 peptidase S24 and S26 domain protein; peptidase S24/S26A/S26B, conserved region 2493404..2494024 Nitrosomonas sp. AL212 10299065 YP_004295493.1 CDS NAL212_2527 NC_015222.1 2494021 2495412 D SMART: Exonuclease; Excinuclease ABC, C subunit, N-terminal; TIGRFAM: DNA polymerase III, epsilon subunit; KEGG: mei:Msip34_2797 DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T/DNA polymerase III; Excinuclease ABC, C subunit, N-terminal; DNA polymerase III subunit epsilon 2494021..2495412 Nitrosomonas sp. AL212 10299066 YP_004295494.1 CDS NAL212_2528 NC_015222.1 2495405 2496700 D KEGG: rcu:RCOM_1869020 uv inducible DNA polymerase umuc / mucb, putative; PFAM: DNA-repair protein, UmuC-like; DNA-directed DNA polymerase 2495405..2496700 Nitrosomonas sp. AL212 10299067 YP_004295495.1 CDS NAL212_2529 NC_015222.1 2497016 2497432 R KEGG: tva:TVAG_358270 hypothetical protein; hypothetical protein complement(2497016..2497432) Nitrosomonas sp. AL212 10299068 YP_004295496.1 CDS NAL212_2530 NC_015222.1 2497435 2497740 R KEGG: acp:A2cp1_0062 hypothetical protein; hypothetical protein complement(2497435..2497740) Nitrosomonas sp. AL212 10299069 YP_004295497.1 CDS NAL212_2531 NC_015222.1 2498286 2499107 R KEGG: atu:Atu4861 IS21 family transposase; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; IstB domain-containing protein ATP-binding protein complement(2498286..2499107) Nitrosomonas sp. AL212 10299070 YP_004295498.1 CDS NAL212_2532 NC_015222.1 2499100 2500629 R PFAM: Integrase, catalytic core; KEGG: swi:Swit_4958 transposase; integrase catalytic region complement(2499100..2500629) Nitrosomonas sp. AL212 10299071 YP_004295499.1 CDS NAL212_2533 NC_015222.1 2501019 2502602 R PFAM: Transposase, IS66; KEGG: gca:Galf_2413 transposase; transposase IS66 complement(2501019..2502602) Nitrosomonas sp. AL212 10299072 YP_004295500.1 CDS NAL212_2534 NC_015222.1 2502656 2503006 R KEGG: eba:ebB55 transposase, fragment; manually curated; PFAM: Transposase (putative), IS66 Orf2-like; IS66 Orf2 family protein complement(2502656..2503006) Nitrosomonas sp. AL212 10299073 YP_004295501.1 CDS NAL212_2535 NC_015222.1 2502994 2503290 R KEGG: dat:HRM2_44620 hypothetical protein; hypothetical protein complement(2502994..2503290) Nitrosomonas sp. AL212 10299074 YP_004295502.1 CDS NAL212_2536 NC_015222.1 2503455 2503652 R KEGG: eba:ebA808 hypothetical protein; hypothetical protein complement(2503455..2503652) Nitrosomonas sp. AL212 10299075 YP_004295503.1 CDS NAL212_2537 NC_015222.1 2503657 2504061 R KEGG: dac:Daci_1630 hypothetical protein; hypothetical protein complement(2503657..2504061) Nitrosomonas sp. AL212 10299076 YP_004295504.1 CDS NAL212_2538 NC_015222.1 2504309 2505439 R KEGG: cdf:CDP04 putative phage capsid protein; hypothetical protein complement(2504309..2505439) Nitrosomonas sp. AL212 10299077 YP_004295505.1 CDS NAL212_2539 NC_015222.1 2505679 2505972 R KEGG: aag:AaeL_AAEL006891 prickle; hypothetical protein complement(2505679..2505972) Nitrosomonas sp. AL212 10299078 YP_004295506.1 CDS NAL212_2540 NC_015222.1 2505972 2506607 R KEGG: meh:M301_1151 hypothetical protein; hypothetical protein complement(2505972..2506607) Nitrosomonas sp. AL212 10299079 YP_004295507.1 CDS NAL212_2541 NC_015222.1 2506604 2508013 R PFAM: ParB-like nuclease; KEGG: sus:Acid_1672 hypothetical protein; ParB domain-containing protein nuclease complement(2506604..2508013) Nitrosomonas sp. AL212 10299080 YP_004295508.1 CDS NAL212_2542 NC_015222.1 2508010 2508327 R KEGG: rpf:Rpic12D_3450 hypothetical protein; hypothetical protein complement(2508010..2508327) Nitrosomonas sp. AL212 10299081 YP_004295509.1 CDS NAL212_2543 NC_015222.1 2508327 2508557 R PFAM: Prophage CP4-57 regulatory; KEGG: gca:Galf_2036 phage transcriptional regulator, AlpA; prophage CP4-57 regulatory complement(2508327..2508557) Nitrosomonas sp. AL212 10299082 YP_004295510.1 CDS NAL212_2544 NC_015222.1 2508685 2509335 R KEGG: pfh:PFHG_01564 conserved hypothetical protein; hypothetical protein complement(2508685..2509335) Nitrosomonas sp. AL212 10299083 YP_004295511.1 CDS NAL212_2545 NC_015222.1 2509335 2510591 R PFAM: Integrase, catalytic core, phage; KEGG: cvi:CV_0651 prophage CP4-like integrase; integrase family protein complement(2509335..2510591) Nitrosomonas sp. AL212 10299084 YP_004295512.1 CDS NAL212_2546 NC_015222.1 2511508 2512473 D KEGG: dar:Daro_1081 magnesium/cobalt transporter CorA; TIGRFAM: Magnesium/cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA-like; magnesium and cobalt transport protein CorA 2511508..2512473 Nitrosomonas sp. AL212 10299086 YP_004295513.1 CDS NAL212_2547 NC_015222.1 2512633 2513712 R KEGG: nmu:Nmul_A2243 tRNA-specific 2-thiouridylase MnmA; TIGRFAM: tRNA-specific 2-thiouridylase; PFAM: tRNA-specific 2-thiouridylase; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase complement(2512633..2513712) Nitrosomonas sp. AL212 10299087 YP_004295514.1 CDS NAL212_2548 NC_015222.1 2513717 2514172 R PFAM: NUDIX hydrolase domain; KEGG: nmu:Nmul_A2244 NUDIX hydrolase; NUDIX hydrolase complement(2513717..2514172) Nitrosomonas sp. AL212 10299088 YP_004295515.1 CDS NAL212_2550 NC_015222.1 2515544 2515801 R PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: avn:Avin_38450 hypothetical protein; Nicotinamide mononucleotide transporter PnuC complement(2515544..2515801) Nitrosomonas sp. AL212 10299090 YP_004295516.1 CDS NAL212_2551 NC_015222.1 2515959 2516294 R KEGG: mca:MCA1082 hypothetical protein; hypothetical protein complement(2515959..2516294) Nitrosomonas sp. AL212 10299091 YP_004295517.1 CDS NAL212_2552 NC_015222.1 2516550 2516795 D KEGG: spu:575561 hypothetical LOC575561; hypothetical protein 2516550..2516795 Nitrosomonas sp. AL212 10299092 YP_004295518.1 CDS NAL212_2553 NC_015222.1 2517192 2517482 D KEGG: cel:R144.2 hypothetical protein; hypothetical protein 2517192..2517482 Nitrosomonas sp. AL212 10299093 YP_004295519.1 CDS NAL212_2554 NC_015222.1 2517615 2521373 R TIGRFAM: RNA helicase, ATP-dependent DEAH box, HrpA type; PFAM: Helicase-associated domain; Helicase, C-terminal; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Domain of unknown function DUF1605; KEGG: nmu:Nmul_A1393 ATP-dependent helicase HrpA; SMART: Helicase-associated domain; DEAD-like helicase, N-terminal; Helicase, C-terminal; ATPase, AAA+ type, core; ATP-dependent helicase HrpA complement(2517615..2521373) Nitrosomonas sp. AL212 10299094 YP_004295520.1 CDS NAL212_2555 NC_015222.1 2521757 2521963 D KEGG: swo:Swol_1551 hypothetical protein; TIGRFAM: Addiction module component, CHP02574; PFAM: Addiction module component, CHP02574; addiction module protein 2521757..2521963 Nitrosomonas sp. AL212 10299095 YP_004295521.1 CDS NAL212_2556 NC_015222.1 2521963 2522259 D PFAM: Plasmid stabilisation system; KEGG: pph:Ppha_1705 plasmid stabilization system; plasmid stabilization system 2521963..2522259 Nitrosomonas sp. AL212 10299096 YP_004295522.1 CDS NAL212_2557 NC_015222.1 2522351 2524135 R PFAM: Protein of unknown function DUF2081; Domain of unknown function DUF262; KEGG: slp:Slip_0088 protein of unknown function DUF2081; hypothetical protein complement(2522351..2524135) Nitrosomonas sp. AL212 10299097 YP_004295523.1 CDS NAL212_2559 NC_015222.1 2524857 2525177 D PFAM: Transposase IS3/IS911family; KEGG: alv:Alvin_1732 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 2524857..2525177 Nitrosomonas sp. AL212 10299099 YP_004295524.1 CDS NAL212_2561 NC_015222.1 2526066 2526212 D hypothetical protein 2526066..2526212 Nitrosomonas sp. AL212 10299101 YP_004295525.1 CDS NAL212_2562 NC_015222.1 2526509 2527018 D KEGG: mbu:Mbur_1706 hypothetical protein; hypothetical protein 2526509..2527018 Nitrosomonas sp. AL212 10299102 YP_004295526.1 CDS NAL212_2563 NC_015222.1 2527096 2527512 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mem:Memar_2271 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 2527096..2527512 Nitrosomonas sp. AL212 10299103 YP_004295527.1 CDS NAL212_2564 NC_015222.1 2527499 2527813 D PFAM: TfoX, C-terminal; KEGG: cpb:Cphamn1_2250 TfoX domain protein; TfoX domain-containing protein 2527499..2527813 Nitrosomonas sp. AL212 10299104 YP_004295528.1 CDS NAL212_2565 NC_015222.1 2527864 2528346 D KEGG: lbz:LbrM24_V2.1470 hypothetical protein; hypothetical protein 2527864..2528346 Nitrosomonas sp. AL212 10299105 YP_004295529.1 CDS NAL212_2566 NC_015222.1 2528311 2528430 R hypothetical protein complement(2528311..2528430) Nitrosomonas sp. AL212 10299106 YP_004295530.1 CDS NAL212_2567 NC_015222.1 2528581 2528994 D KEGG: lpa:lpa_00291 hypothetical protein; PFAM: Staphylococcal nuclease (SNase-like); SMART: Staphylococcal nuclease (SNase-like); nuclease (SNase domain-containing protein) 2528581..2528994 Nitrosomonas sp. AL212 10299107 YP_004295531.1 CDS NAL212_2568 NC_015222.1 2529176 2529784 R PFAM: Glutathione S-transferase, C-terminal; KEGG: mmb:Mmol_1943 glutathione S-transferase domain protein; glutathione S-transferase domain-containing protein complement(2529176..2529784) Nitrosomonas sp. AL212 10299108 YP_004295532.1 CDS NAL212_2569 NC_015222.1 2529815 2530594 R KEGG: slt:Slit_2005 heat shock protein DnaJ domain protein; PFAM: Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal; heat shock protein DnaJ domain-containing protein complement(2529815..2530594) Nitrosomonas sp. AL212 10299109 YP_004295533.1 CDS NAL212_2570 NC_015222.1 2530678 2530923 R PFAM: BolA protein; KEGG: nmu:Nmul_A2742 BolA-like protein; BolA family protein complement(2530678..2530923) Nitrosomonas sp. AL212 10299110 YP_004295534.1 CDS NAL212_2571 NC_015222.1 2530972 2531727 R PFAM: ABC-2 type transporter; KEGG: nmu:Nmul_A2743 hypothetical protein; ABC transporter complement(2530972..2531727) Nitrosomonas sp. AL212 10299111 YP_004295535.1 CDS NAL212_2572 NC_015222.1 2531724 2532641 R PFAM: ABC transporter-like; KEGG: nmu:Nmul_A2744 ABC transporter related; SMART: ATPase, AAA+ type, core; sulfate-transporting ATPase complement(2531724..2532641) Nitrosomonas sp. AL212 10299112 YP_004295536.1 CDS NAL212_2573 NC_015222.1 2532689 2533039 R PFAM: Sulphate transporter/antisigma-factor antagonist STAS; KEGG: nmu:Nmul_A2745 anti-sigma-factor antagonist domain-containing protein; sulfate transporter/antisigma-factor antagonist STAS complement(2532689..2533039) Nitrosomonas sp. AL212 10299113 YP_004295537.1 CDS NAL212_2574 NC_015222.1 2533042 2533662 R PFAM: Toluene tolerance Ttg2; KEGG: net:Neut_0854 toluene tolerance family protein; toluene tolerance family protein complement(2533042..2533662) Nitrosomonas sp. AL212 10299114 YP_004295538.1 CDS NAL212_2575 NC_015222.1 2533883 2534350 R PFAM: Mammalian cell entry-related; KEGG: nmu:Nmul_A2747 hypothetical protein; mammalian cell entry domain-containing protein complement(2533883..2534350) Nitrosomonas sp. AL212 10299115 YP_004295539.1 CDS NAL212_2576 NC_015222.1 2534350 2535147 R KEGG: nmu:Nmul_A2748 hypothetical protein; TIGRFAM: Domain of unknown function DUF140; PFAM: Domain of unknown function DUF140; hypothetical protein complement(2534350..2535147) Nitrosomonas sp. AL212 10299116 YP_004295540.1 CDS NAL212_2577 NC_015222.1 2535140 2535952 R PFAM: ABC transporter-like; KEGG: nmu:Nmul_A2749 ABC transporter related; SMART: ATPase, AAA+ type, core; sulfate-transporting ATPase complement(2535140..2535952) Nitrosomonas sp. AL212 10299117 YP_004295541.1 CDS NAL212_2578 NC_015222.1 2536292 2537143 D KEGG: net:Neut_0850 nuclease; PFAM: Staphylococcal nuclease (SNase-like); SMART: Staphylococcal nuclease (SNase-like); nuclease (SNase domain-containing protein) 2536292..2537143 Nitrosomonas sp. AL212 10299118 YP_004295542.1 CDS NAL212_2579 NC_015222.1 2537208 2538515 R KEGG: neu:NE1533 putative aminopeptidase 2; PFAM: Peptidase M18; aspartyl aminopeptidase complement(2537208..2538515) Nitrosomonas sp. AL212 10299119 YP_004295543.1 CDS NAL212_2580 NC_015222.1 2539029 2542559 D PFAM: Haemolysin-type calcium-binding repeat; KEGG: pde:Pden_0560 hemolysin-type calcium-binding region; hemolysin-type calcium-binding protein 2539029..2542559 Nitrosomonas sp. AL212 10299120 YP_004295544.1 CDS NAL212_2581 NC_015222.1 2542686 2543984 R KEGG: net:Neut_1381 cytochrome c, class I; PFAM: Cytochrome c, class I; gluconate 2-dehydrogenase complement(2542686..2543984) Nitrosomonas sp. AL212 10299121 YP_004295545.1 CDS NAL212_2582 NC_015222.1 2543981 2544691 R PFAM: Cytochrome c, class I; KEGG: neu:NE0904 cytochrome c; cytochrome c class I complement(2543981..2544691) Nitrosomonas sp. AL212 10299122 YP_004295546.1 CDS NAL212_2583 NC_015222.1 2545073 2546086 D PFAM: Sodium/calcium exchanger membrane region; KEGG: mca:MCA0850 cation transporter, putative; sodium/calcium exchanger membrane region 2545073..2546086 Nitrosomonas sp. AL212 10299123 YP_004295547.1 CDS NAL212_2584 NC_015222.1 2546098 2548815 R SMART: ATPase, P-type cation-transporter, N-terminal; TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: slt:Slit_2864 ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: ATPase, P-type, ATPase-associated domain; ATPase, P-type cation-transporter, C-terminal; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase; P-type HAD superfamily ATPase complement(2546098..2548815) Nitrosomonas sp. AL212 10299124 YP_004295548.1 CDS NAL212_2585 NC_015222.1 2548940 2549452 D PFAM: Beta-lactamase hydrolase-like; KEGG: net:Neut_1090 hypothetical protein; beta-lactamase hydrolase-family protein 2548940..2549452 Nitrosomonas sp. AL212 10299125 YP_004295549.1 CDS NAL212_2586 NC_015222.1 2549523 2550005 D KEGG: mhu:Mhun_1175 methyl-accepting chemotaxis sensory transducer; hypothetical protein 2549523..2550005 Nitrosomonas sp. AL212 10299126 YP_004295550.1 CDS NAL212_2587 NC_015222.1 2550194 2551024 R PFAM: Protein of unknown function DUF81; KEGG: rpf:Rpic12D_1707 protein of unknown function DUF81; hypothetical protein complement(2550194..2551024) Nitrosomonas sp. AL212 10299127 YP_004295551.1 CDS NAL212_2588 NC_015222.1 2551031 2552635 R KEGG: neu:NE2567 hypothetical protein; TIGRFAM: Beta-lactamase hydrolase-like; PFAM: Beta-lactamase hydrolase-like; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; beta-lactamase hydrolase-family protein complement(2551031..2552635) Nitrosomonas sp. AL212 10299128 YP_004295552.1 CDS NAL212_2589 NC_015222.1 2552749 2553075 R KEGG: neu:NE2568 ArsR family regulatory protein; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; regulatory protein ArsR complement(2552749..2553075) Nitrosomonas sp. AL212 10299129 YP_004295553.1 CDS NAL212_2590 NC_015222.1 2553179 2553595 R PFAM: Domain of unknown function DUF395, YeeE/YedE; KEGG: nmu:Nmul_A1684 YeeE/YedE; hypothetical protein complement(2553179..2553595) Nitrosomonas sp. AL212 10299130 YP_004295554.1 CDS NAL212_2591 NC_015222.1 2553629 2554057 R KEGG: nmu:Nmul_A1685 YeeE/YedE; manually curated; PFAM: Domain of unknown function DUF395, YeeE/YedE; hypothetical protein complement(2553629..2554057) Nitrosomonas sp. AL212 10299131 YP_004295555.1 CDS NAL212_2592 NC_015222.1 2554187 2555047 D KEGG: nmu:Nmul_A1686 beta-lactamase-like; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like; beta-lactamase domain-containing protein 2554187..2555047 Nitrosomonas sp. AL212 10299132 YP_004295556.1 CDS NAL212_2593 NC_015222.1 2555135 2556145 R KEGG: mga:MGA_1131 DnaJ-like molecular chaperone; PFAM: Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal; heat shock protein DnaJ domain-containing protein complement(2555135..2556145) Nitrosomonas sp. AL212 10299133 YP_004295557.1 CDS NAL212_2594 NC_015222.1 2556406 2556591 D PFAM: Hemin uptake protein HemP; KEGG: neu:NE1541 hypothetical protein; hemin uptake protein HemP 2556406..2556591 Nitrosomonas sp. AL212 10299134 YP_004295558.1 CDS NAL212_2595 NC_015222.1 2556838 2557302 D KEGG: neu:NE0863 bacterioferritin; TIGRFAM: Bacterioferritin; PFAM: Ferritin/Dps protein; bacterioferritin 2556838..2557302 Nitrosomonas sp. AL212 10299135 YP_004295559.1 CDS NAL212_2596 NC_015222.1 2557421 2558068 D KEGG: nmu:Nmul_A2395 hypothetical protein; hypothetical protein 2557421..2558068 Nitrosomonas sp. AL212 10299136 YP_004295560.1 CDS NAL212_2597 NC_015222.1 2558215 2559744 D PFAM: Integrase, catalytic core; KEGG: swi:Swit_4958 transposase; integrase catalytic region 2558215..2559744 Nitrosomonas sp. AL212 10299137 YP_004295561.1 CDS NAL212_2598 NC_015222.1 2559737 2560558 D KEGG: atu:Atu4861 IS21 family transposase; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; IstB domain-containing protein ATP-binding protein 2559737..2560558 Nitrosomonas sp. AL212 10299138 YP_004295562.1 CDS NAL212_2601 NC_015222.1 2562014 2562451 R PFAM: Transposase IS200-like; KEGG: xne:XNC1_2829 transposase (fragment); transposase IS200-family protein complement(2562014..2562451) Nitrosomonas sp. AL212 10299141 YP_004295563.1 CDS NAL212_2602 NC_015222.1 2562780 2563349 R KEGG: nmu:Nmul_A2762 hypothetical protein; hypothetical protein complement(2562780..2563349) Nitrosomonas sp. AL212 10299142 YP_004295564.1 CDS NAL212_2603 NC_015222.1 2563417 2564004 R KEGG: nmu:Nmul_A1398 hypothetical protein; hypothetical protein complement(2563417..2564004) Nitrosomonas sp. AL212 10299143 YP_004295565.1 CDS NAL212_2604 NC_015222.1 2564165 2565427 R KEGG: nmu:Nmul_A2764 monooxygenase subunit B protein; TIGRFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit B; PFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit B; methane monooxygenase/ammonia monooxygenase subunit B complement(2564165..2565427) Nitrosomonas sp. AL212 10299144 YP_004295566.1 CDS NAL212_2605 NC_015222.1 2565427 2566251 R KEGG: nmu:Nmul_A2765 ammonia monooxygenase; TIGRFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit A; PFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit A; methane monooxygenase/ammonia monooxygenase subunit A complement(2565427..2566251) Nitrosomonas sp. AL212 10299145 YP_004295567.1 CDS NAL212_2606 NC_015222.1 2566426 2567235 R KEGG: nmu:Nmul_A2766 ammonia monooxygenase/methane monooxygenase, subunit C; TIGRFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit C; PFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit C; methane monooxygenase/ammonia monooxygenase subunit C complement(2566426..2567235) Nitrosomonas sp. AL212 10299146 YP_004295568.1 CDS NAL212_2609 NC_015222.1 2569029 2570183 D PFAM: Integrase, catalytic core; KEGG: bac:BamMC406_6587 integrase catalytic region; integrase catalytic region 2569029..2570183 Nitrosomonas sp. AL212 10299149 YP_004295569.1 CDS NAL212_2613 NC_015222.1 2571285 2571671 R KEGG: net:Neut_1130 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; response regulator receiver protein complement(2571285..2571671) Nitrosomonas sp. AL212 10299153 YP_004295570.1 CDS NAL212_2614 NC_015222.1 2571802 2573259 R PFAM: Cation transporter; KEGG: neu:NE1835 cation transport protein; cation transporter complement(2571802..2573259) Nitrosomonas sp. AL212 10299154 YP_004295571.1 CDS NAL212_2615 NC_015222.1 2573272 2574720 R PFAM: Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal; KEGG: neu:NE1834 potassium transporter peripheral membrane component; TrkA-N domain-containing protein complement(2573272..2574720) Nitrosomonas sp. AL212 10299155 YP_004295572.1 CDS NAL212_2616 NC_015222.1 2574730 2575518 R PFAM: Inositol monophosphatase; KEGG: net:Neut_1051 inositol monophosphatase; inositol monophosphatase complement(2574730..2575518) Nitrosomonas sp. AL212 10299156 YP_004295573.1 CDS NAL212_2617 NC_015222.1 2575518 2576078 R PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; KEGG: net:Neut_1050 redoxin domain-containing protein; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen complement(2575518..2576078) Nitrosomonas sp. AL212 10299157 YP_004295574.1 CDS NAL212_2618 NC_015222.1 2576247 2576993 D KEGG: neu:NE0779 16S ribosomal RNA methyltransferase RsmE; TIGRFAM: Ribosomal RNA small subunit methyltransferase E; PFAM: Ribosomal RNA small subunit methyltransferase E; ribosomal RNA small subunit methyltransferase E 2576247..2576993 Nitrosomonas sp. AL212 10299158 YP_004295575.1 CDS NAL212_2619 NC_015222.1 2576996 2578354 D TIGRFAM: Amino-acid N-acetyltransferase (ArgA); KEGG: nmu:Nmul_A0380 N-acetylglutamate synthase; PFAM: Aspartate/glutamate/uridylate kinase; GCN5-related N-acetyltransferase (GNAT) domain; amino-acid N-acetyltransferase 2576996..2578354 Nitrosomonas sp. AL212 10299159 YP_004295576.1 CDS NAL212_2620 NC_015222.1 2578457 2578729 D PFAM: Fe(II) trafficking protein YggX; KEGG: neu:NE0322 hypothetical protein; Fe(II) trafficking protein YggX 2578457..2578729 Nitrosomonas sp. AL212 10299160 YP_004295577.1 CDS NAL212_2621 NC_015222.1 2578831 2580786 D PFAM: ASPIC/UnbV; KEGG: cyc:PCC7424_4587 ASPIC/UnbV domain protein; ASPIC/UnbV domain-containing protein 2578831..2580786 Nitrosomonas sp. AL212 10299161 YP_004295578.1 CDS NAL212_2622 NC_015222.1 2580859 2581068 R KEGG: phu:Phum_PHUM371240 hypothetical protein; hypothetical protein complement(2580859..2581068) Nitrosomonas sp. AL212 10299162 YP_004295579.1 CDS NAL212_2623 NC_015222.1 2581180 2583621 D PFAM: Peptidase S16, Lon C-terminal; KEGG: rfr:Rfer_3315 putative ATP-dependent protease La, putative; peptidase S16 lon domain-containing protein 2581180..2583621 Nitrosomonas sp. AL212 10299163 YP_004295580.1 CDS NAL212_2624 NC_015222.1 2583664 2584557 R KEGG: ppr:PBPRB1378 hypothetical protein; hypothetical protein complement(2583664..2584557) Nitrosomonas sp. AL212 10299164 YP_004295581.1 CDS NAL212_2625 NC_015222.1 2584816 2585982 R KEGG: nde:NIDE1370 hypothetical protein; hypothetical protein complement(2584816..2585982) Nitrosomonas sp. AL212 10299165 YP_004295582.1 CDS NAL212_2626 NC_015222.1 2586605 2587768 R KEGG: nde:NIDE1370 hypothetical protein; hypothetical protein complement(2586605..2587768) Nitrosomonas sp. AL212 10299166 YP_004295583.1 CDS NAL212_2627 NC_015222.1 2588276 2589001 R PFAM: Glycosyl transferase, family 2; KEGG: nmu:Nmul_A1366 glycosyl transferase family protein; family 2 glycosyl transferase complement(2588276..2589001) Nitrosomonas sp. AL212 10299167 YP_004295584.1 CDS NAL212_2628 NC_015222.1 2589088 2589678 R KEGG: nhl:Nhal_2068 hypothetical protein; hypothetical protein complement(2589088..2589678) Nitrosomonas sp. AL212 10299168 YP_004295585.1 CDS NAL212_2629 NC_015222.1 2589860 2591335 R KEGG: slt:Slit_2458 carbohydrate kinase, FGGY-like protein; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal; glycerol kinase complement(2589860..2591335) Nitrosomonas sp. AL212 10299169 YP_004295586.1 CDS NAL212_2630 NC_015222.1 2591332 2592921 R KEGG: slt:Slit_2459 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; glycerol-3-phosphate dehydrogenase complement(2591332..2592921) Nitrosomonas sp. AL212 10299170 YP_004295587.1 CDS NAL212_2631 NC_015222.1 2592918 2593658 R PFAM: Glycerophosphoryl diester phosphodiesterase; KEGG: slt:Slit_2460 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase complement(2592918..2593658) Nitrosomonas sp. AL212 10299171 YP_004295588.1 CDS NAL212_2632 NC_015222.1 2593694 2594851 R PFAM: Ankyrin repeat; KEGG: aas:Aasi_1435 hypothetical protein; ankyrin complement(2593694..2594851) Nitrosomonas sp. AL212 10299172 YP_004295589.1 CDS NAL212_2633 NC_015222.1 2595095 2595841 D KEGG: nmu:Nmul_A1977 hypothetical protein; TIGRFAM: Multi-copper polyphenol oxidoreductase, laccase; PFAM: Multi-copper polyphenol oxidoreductase, laccase; multi-copper polyphenol oxidoreductase, laccase 2595095..2595841 Nitrosomonas sp. AL212 10299173 YP_004295590.1 CDS NAL212_2634 NC_015222.1 2595916 2596716 D PFAM: Zinc/iron permease; KEGG: nmu:Nmul_A1978 zinc transporter ZIP; zinc/iron permease 2595916..2596716 Nitrosomonas sp. AL212 10299174 YP_004295591.1 CDS NAL212_2635 NC_015222.1 2596772 2597188 D KEGG: dma:DMR_04640 hypothetical protein; hypothetical protein 2596772..2597188 Nitrosomonas sp. AL212 10299175 YP_004295592.1 CDS NAL212_2636 NC_015222.1 2597351 2598610 D PFAM: Major facilitator superfamily MFS-1; KEGG: tye:THEYE_A0038 oxalate/formate antiporter; major facilitator superfamily protein 2597351..2598610 Nitrosomonas sp. AL212 10299176 YP_004295593.1 CDS NAL212_2637 NC_015222.1 2598683 2599429 D KEGG: pif:PITG_13861 hypothetical protein; hypothetical protein 2598683..2599429 Nitrosomonas sp. AL212 10299177 YP_004295594.1 CDS NAL212_2638 NC_015222.1 2599508 2600215 R KEGG: lme:LEUM_0004 recombination protein F; hypothetical protein complement(2599508..2600215) Nitrosomonas sp. AL212 10299178 YP_004295595.1 CDS NAL212_2639 NC_015222.1 2600282 2601133 R KEGG: cfe:CF0099 hypothetical protein; hypothetical protein complement(2600282..2601133) Nitrosomonas sp. AL212 10299179 YP_004295596.1 CDS NAL212_2640 NC_015222.1 2601123 2602022 R PFAM: Integrase, catalytic core; KEGG: pde:Pden_3846 integrase catalytic subunit; integrase catalytic region complement(2601123..2602022) Nitrosomonas sp. AL212 10299180 YP_004295597.1 CDS NAL212_2641 NC_015222.1 2602022 2602342 R PFAM: Transposase IS3/IS911family; KEGG: alv:Alvin_1732 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein complement(2602022..2602342) Nitrosomonas sp. AL212 10299181 YP_004295598.1 CDS NAL212_2642 NC_015222.1 2602365 2602568 R hypothetical protein complement(2602365..2602568) Nitrosomonas sp. AL212 10299182 YP_004295599.1 CDS NAL212_2643 NC_015222.1 2602596 2602949 R KEGG: ddf:DEFDS_P244 hypothetical protein; hypothetical protein complement(2602596..2602949) Nitrosomonas sp. AL212 10299183 YP_004295600.1 CDS NAL212_2644 NC_015222.1 2603069 2604031 D PFAM: Transposase, IS4-like; KEGG: cyn:Cyan7425_5319 transposase IS4 family protein; transposase IS4 family protein 2603069..2604031 Nitrosomonas sp. AL212 10299184 YP_004295601.1 CDS NAL212_2646 NC_015222.1 2604574 2604894 D PFAM: Transposase IS3/IS911family; KEGG: alv:Alvin_1732 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 2604574..2604894 Nitrosomonas sp. AL212 10299186 YP_004295602.1 CDS NAL212_2647 NC_015222.1 2604894 2605793 D PFAM: Integrase, catalytic core; KEGG: pde:Pden_3846 integrase catalytic subunit; integrase catalytic region 2604894..2605793 Nitrosomonas sp. AL212 10299187 YP_004295603.1 CDS NAL212_2648 NC_015222.1 2605977 2607476 R PFAM: Integrase, catalytic core; KEGG: mms:mma_2809 transposase IstA; integrase catalytic region complement(2605977..2607476) Nitrosomonas sp. AL212 10299188 YP_004295604.1 CDS NAL212_2649 NC_015222.1 2607717 2608355 D PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: bba:Bd3594 hypothetical protein; glutathione S-transferase domain-containing protein 2607717..2608355 Nitrosomonas sp. AL212 10299189 YP_004295605.1 CDS NAL212_2650 NC_015222.1 2608352 2609203 R PFAM: RIO-like kinase; KEGG: mpt:Mpe_A1034 RIO-type serine/threonine protein kinase; RIO-like kinase complement(2608352..2609203) Nitrosomonas sp. AL212 10299190 YP_004295606.1 CDS NAL212_2651 NC_015222.1 2609462 2609947 R KEGG: gur:Gura_0848 3-demethylubiquinone-9 3-methyltransferase; 3-demethylubiquinone-9 3-methyltransferase complement(2609462..2609947) Nitrosomonas sp. AL212 10299191 YP_004295607.1 CDS NAL212_2652 NC_015222.1 2610106 2610237 R hypothetical protein complement(2610106..2610237) Nitrosomonas sp. AL212 10299192 YP_004295608.1 CDS NAL212_2653 NC_015222.1 2610277 2610666 R KEGG: lxx:Lxx04630 ABC transporter, permease protein; hypothetical protein complement(2610277..2610666) Nitrosomonas sp. AL212 10299193 YP_004295609.1 CDS NAL212_2654 NC_015222.1 2610689 2610895 R PFAM: CopG-like DNA-binding; KEGG: rha:RHA1_ro08415 hypothetical protein; CopG-like DNA-binding domain-containing protein complement(2610689..2610895) Nitrosomonas sp. AL212 10299194 YP_004295610.1 CDS NAL212_2655 NC_015222.1 2611303 2612907 D KEGG: nmu:Nmul_A1811 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter 2611303..2612907 Nitrosomonas sp. AL212 10299195 YP_004295611.1 CDS NAL212_2657 NC_015222.1 2614537 2614836 D PFAM: Transposase IS3/IS911family; KEGG: rms:RMA_0745 transposase; transposase IS3/IS911 family protein 2614537..2614836 Nitrosomonas sp. AL212 10299197 YP_004295612.1 CDS NAL212_2658 NC_015222.1 2614868 2616022 D PFAM: Integrase, catalytic core; KEGG: bac:BamMC406_6587 integrase catalytic region; integrase catalytic region 2614868..2616022 Nitrosomonas sp. AL212 10299198 YP_004295613.1 CDS NAL212_2660 NC_015222.1 2616441 2617223 R KEGG: pst:PSPTO_B0039 transposase/IS protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; IstB domain-containing protein ATP-binding protein complement(2616441..2617223) Nitrosomonas sp. AL212 10299200 YP_004295614.1 CDS NAL212_2661 NC_015222.1 2617327 2618241 R PFAM: Integrase, catalytic core; KEGG: pst:PSPTO_B0040 ISPsy4, transposase; integrase catalytic region complement(2617327..2618241) Nitrosomonas sp. AL212 10299201 YP_004295615.1 CDS NAL212_2662 NC_015222.1 2619379 2620188 R TIGRFAM: GTP cyclohydrolase FolE2/MptA; KEGG: neu:NE1163 putative GTP cyclohydrolase; PFAM: GTP cyclohydrolase FolE2/MptA; hypothetical protein complement(2619379..2620188) Nitrosomonas sp. AL212 10299202 YP_004295616.1 CDS NAL212_2663 NC_015222.1 2620255 2622099 R SMART: Transketolase-like, pyrimidine-binding domain; TIGRFAM: Deoxyxylulose-5-phosphate synthase; KEGG: net:Neut_1501 1-deoxy-D-xylulose-5-phosphate synthase; PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; Dehydrogenase, E1 component; deoxyxylulose-5-phosphate synthase complement(2620255..2622099) Nitrosomonas sp. AL212 10299203 YP_004295617.1 CDS NAL212_2664 NC_015222.1 2622141 2623034 R KEGG: nmu:Nmul_A0235 polyprenyl synthetase; PFAM: Polyprenyl synthetase; Geranyltranstransferase complement(2622141..2623034) Nitrosomonas sp. AL212 10299204 YP_004295618.1 CDS NAL212_2665 NC_015222.1 2623024 2623278 R KEGG: net:Neut_1499 exodeoxyribonuclease VII small subunit; TIGRFAM: Exonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit; exodeoxyribonuclease VII small subunit complement(2623024..2623278) Nitrosomonas sp. AL212 10299205 YP_004295619.1 CDS NAL212_2666 NC_015222.1 2623710 2624183 D KEGG: neu:NE0798 hypothetical protein; hypothetical protein 2623710..2624183 Nitrosomonas sp. AL212 10299206 YP_004295620.1 CDS NAL212_2667 NC_015222.1 2624274 2625425 D KEGG: nmu:Nmul_A0400 hypothetical protein; hypothetical protein 2624274..2625425 Nitrosomonas sp. AL212 10299207 YP_004295621.1 CDS NAL212_2668 NC_015222.1 2625422 2626234 D KEGG: nmu:Nmul_A0401 hypothetical protein; hypothetical protein 2625422..2626234 Nitrosomonas sp. AL212 10299208 YP_004295622.1 CDS NAL212_2669 NC_015222.1 2626231 2627307 D PFAM: Permease YjgP/YjgQ, predicted; KEGG: neu:NE0801 hypothetical protein; YjgP/YjgQ family permease 2626231..2627307 Nitrosomonas sp. AL212 10299209 YP_004295623.1 CDS NAL212_2670 NC_015222.1 2627307 2628365 D PFAM: Permease YjgP/YjgQ, predicted; KEGG: net:Neut_1103 permease YjgP/YjgQ family protein; YjgP/YjgQ family permease 2627307..2628365 Nitrosomonas sp. AL212 10299210 YP_004295624.1 CDS NAL212_2671 NC_015222.1 2628619 2629851 D PFAM: CDP-alcohol phosphatidyltransferase; KEGG: net:Neut_1104 CDP-alcohol phosphatidyltransferase; CDP-alcohol phosphatidyltransferase 2628619..2629851 Nitrosomonas sp. AL212 10299211 YP_004295625.1 CDS NAL212_2672 NC_015222.1 2629880 2631874 D PFAM: Diacylglycerol kinase, catalytic domain; KEGG: nmu:Nmul_A0406 hypothetical protein; diacylglycerol kinase catalytic subunit 2629880..2631874 Nitrosomonas sp. AL212 10299212 YP_004295626.1 CDS NAL212_2673 NC_015222.1 2631962 2632606 D PFAM: Protein of unknown function DUF2959; KEGG: net:Neut_1107 hypothetical protein; hypothetical protein 2631962..2632606 Nitrosomonas sp. AL212 10299213 YP_004295627.1 CDS NAL212_2674 NC_015222.1 2632677 2633213 D PFAM: YaeQ; KEGG: pca:Pcar_2272 hypothetical protein; YaeQ family protein 2632677..2633213 Nitrosomonas sp. AL212 10299214 YP_004295628.1 CDS NAL212_2675 NC_015222.1 2633318 2633668 R PFAM: Protein of unknown function DUF488; KEGG: rle:pRL120460 hypothetical protein; hypothetical protein complement(2633318..2633668) Nitrosomonas sp. AL212 10299215 YP_004295629.1 CDS NAL212_2676 NC_015222.1 2633750 2634133 R KEGG: rcu:RCOM_1956380 hypothetical protein; hypothetical protein complement(2633750..2634133) Nitrosomonas sp. AL212 10299216 YP_004295630.1 CDS NAL212_2677 NC_015222.1 2634516 2635166 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: nmu:Nmul_A2300 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 2634516..2635166 Nitrosomonas sp. AL212 10299217 YP_004295631.1 CDS NAL212_2678 NC_015222.1 2635153 2635554 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: nmu:Nmul_A2301 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 2635153..2635554 Nitrosomonas sp. AL212 10299218 YP_004295632.1 CDS NAL212_2679 NC_015222.1 2635565 2636440 D KEGG: nmu:Nmul_A2302 hypothetical protein; hypothetical protein 2635565..2636440 Nitrosomonas sp. AL212 10299219 YP_004295633.1 CDS NAL212_2680 NC_015222.1 2636584 2637930 D PFAM: Protein of unknown function DUF3391; Metal-dependent phosphohydrolase, HD subdomain; KEGG: nwa:Nwat_2753 metal dependent phosphohydrolase; metal dependent phosphohydrolase 2636584..2637930 Nitrosomonas sp. AL212 10299220 YP_004295634.1 CDS NAL212_2681 NC_015222.1 2637943 2639241 D KEGG: nwa:Nwat_2754 diguanylate cyclase/phosphodiesterase; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; SMART: Diguanylate phosphodiesterase, EAL domain; diguanylate cyclase/phosphodiesterase 2637943..2639241 Nitrosomonas sp. AL212 10299221 YP_004295635.1 CDS NAL212_2683 NC_015222.1 2640084 2640545 R KEGG: meh:M301_0765 protein of unknown function DUF1555; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial; PEP motif putative anchor domain-containing protein complement(2640084..2640545) Nitrosomonas sp. AL212 10299223 YP_004295636.1 CDS NAL212_2684 NC_015222.1 2640799 2641953 D PFAM: Integrase, catalytic core; KEGG: bac:BamMC406_6587 integrase catalytic region; integrase catalytic region 2640799..2641953 Nitrosomonas sp. AL212 10299224 YP_004295637.1 CDS NAL212_2685 NC_015222.1 2642015 2642149 R hypothetical protein complement(2642015..2642149) Nitrosomonas sp. AL212 10299225 YP_004295638.1 CDS NAL212_2686 NC_015222.1 2642121 2642639 R manually curated; KEGG: mca:MCA0595 hypothetical protein; hypothetical protein complement(2642121..2642639) Nitrosomonas sp. AL212 10299226 YP_004295639.1 CDS NAL212_2687 NC_015222.1 2642636 2643235 R PFAM: Glycoside hydrolase, family 19, catalytic; KEGG: dda:Dd703_0358 glycoside hydrolase family 19; glycoside hydrolase family protein complement(2642636..2643235) Nitrosomonas sp. AL212 10299227 YP_004295640.1 CDS NAL212_2688 NC_015222.1 2643334 2645127 D TIGRFAM: DNA mismatch repair protein, N-terminal; PFAM: MutL, C-terminal, dimerisation; DNA mismatch repair protein, C-terminal; ATPase-like, ATP-binding domain; KEGG: nmu:Nmul_A1144 DNA mismatch repair protein MutL; SMART: MutL, C-terminal, dimerisation; ATPase-like, ATP-binding domain; DNA mismatch repair protein MutL 2643334..2645127 Nitrosomonas sp. AL212 10299228 YP_004295641.1 CDS NAL212_2689 NC_015222.1 2645295 2646293 R KEGG: rba:RB8859 D-lactate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; D-lactate dehydrogenase complement(2645295..2646293) Nitrosomonas sp. AL212 10299229 YP_004295642.1 CDS NAL212_2690 NC_015222.1 2646625 2648973 D TIGRFAM: ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; ATPase, P-type, heavy metal translocating; KEGG: maq:Maqu_0131 copper-translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; YHS; Haloacid dehalogenase-like hydrolase; copper-translocating P-type ATPase 2646625..2648973 Nitrosomonas sp. AL212 10299230 YP_004295643.1 CDS NAL212_2691 NC_015222.1 2649090 2649695 D KEGG: noc:Noc_2414 flavoprotein WrbA; TIGRFAM: Flavoprotein WrbA; PFAM: NADPH-dependent FMN reductase; flavoprotein WrbA 2649090..2649695 Nitrosomonas sp. AL212 10299231 YP_004295644.1 CDS NAL212_2692 NC_015222.1 2649745 2650566 D PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: neu:NE0738 hypothetical protein; extradiol ring-cleavage dioxygenase class III protein subunit B 2649745..2650566 Nitrosomonas sp. AL212 10299232 YP_004295645.1 CDS NAL212_2693 NC_015222.1 2650683 2651000 D KEGG: neu:NE0739 cytochrome c, class I; cytochrome c, class I 2650683..2651000 Nitrosomonas sp. AL212 10299233 YP_004295646.1 CDS NAL212_2694 NC_015222.1 2651027 2651977 D KEGG: neu:NE0740 hypothetical protein; hypothetical protein 2651027..2651977 Nitrosomonas sp. AL212 10299234 YP_004295647.1 CDS NAL212_2695 NC_015222.1 2651990 2653534 D KEGG: neu:NE0741 FAD linked oxidase, N-terminal:FAD linked oxidase, C-terminal; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal; 4-cresol dehydrogenase 2651990..2653534 Nitrosomonas sp. AL212 10299235 YP_004295648.1 CDS NAL212_2696 NC_015222.1 2653585 2654694 D KEGG: neu:NE0742 zinc-containing alcohol dehydrogenase superfamily protein; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; aryl-alcohol dehydrogenase 2653585..2654694 Nitrosomonas sp. AL212 10299236 YP_004295649.1 CDS NAL212_2697 NC_015222.1 2654755 2656257 D KEGG: ote:Oter_1695 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain; betaine-aldehyde dehydrogenase 2654755..2656257 Nitrosomonas sp. AL212 10299237 YP_004295650.1 CDS NAL212_2698 NC_015222.1 2656577 2658385 D KEGG: mlo:mll1810 hypothetical protein; manually curated; PFAM: Uncharacterised protein family UPF0118; hypothetical protein 2656577..2658385 Nitrosomonas sp. AL212 10299238 YP_004295651.1 CDS NAL212_2699 NC_015222.1 2658647 2659036 D KEGG: gca:Galf_0047 hypothetical protein; hypothetical protein 2658647..2659036 Nitrosomonas sp. AL212 10299239 YP_004295652.1 CDS NAL212_2700 NC_015222.1 2659255 2660712 R KEGG: gpb:HDN1F_12050 catalase; PFAM: Catalase-related subgroup; Catalase-related immune responsive; catalase complement(2659255..2660712) Nitrosomonas sp. AL212 10299240 YP_004295653.1 CDS NAL212_2701 NC_015222.1 2661082 2661285 D KEGG: rpf:Rpic12D_4386 cold-shock DNA-binding domain protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein 2661082..2661285 Nitrosomonas sp. AL212 10299241 YP_004295654.1 CDS NAL212_2702 NC_015222.1 2661442 2661657 D KEGG: pbe:PB000289.02.0 hypothetical protein; hypothetical protein 2661442..2661657 Nitrosomonas sp. AL212 10299242 YP_004295655.1 CDS NAL212_2703 NC_015222.1 2661694 2662917 D TIGRFAM: Arginine biosynthesis protein ArgJ; KEGG: gca:Galf_0347 arginine biosynthesis bifunctional protein ArgJ; PFAM: Arginine biosynthesis protein ArgJ; arginine biosynthesis bifunctional protein ArgJ 2661694..2662917 Nitrosomonas sp. AL212 10299243 YP_004295656.1 CDS NAL212_2704 NC_015222.1 2662938 2663816 D KEGG: nmu:Nmul_A1008 hypothetical protein; PFAM: Domain of unknown function DUF815; SMART: ATPase, AAA+ type, core; hypothetical protein 2662938..2663816 Nitrosomonas sp. AL212 10299244 YP_004295657.1 CDS NAL212_2705 NC_015222.1 2663813 2664781 D PFAM: Thiamine monophosphate synthase; NUDIX hydrolase domain; KEGG: neu:NE2215 hypothetical protein; thiamine monophosphate synthase 2663813..2664781 Nitrosomonas sp. AL212 10299245 YP_004295658.1 CDS NAL212_2706 NC_015222.1 2664792 2665913 R TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: hse:Hsero_4138 GGDEF domain-containing protein; SMART: Diguanylate cyclase, predicted; diguanylate cyclase complement(2664792..2665913) Nitrosomonas sp. AL212 10299246 YP_004295659.1 CDS NAL212_2707 NC_015222.1 2665925 2666101 R PFAM: Uncharacterised protein family, zinc-binding; KEGG: nmu:Nmul_A1006 hypothetical protein; hypothetical protein complement(2665925..2666101) Nitrosomonas sp. AL212 10299247 YP_004295660.1 CDS NAL212_2708 NC_015222.1 2666314 2666889 D KEGG: nmu:Nmul_A1051 RNA polymerase factor sigma-70; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; ECF subfamily RNA polymerase sigma-24 subunit 2666314..2666889 Nitrosomonas sp. AL212 10299248 YP_004295661.1 CDS NAL212_2709 NC_015222.1 2666886 2667257 D KEGG: nmu:Nmul_A1052 hypothetical protein; hypothetical protein 2666886..2667257 Nitrosomonas sp. AL212 10299249 YP_004295662.1 CDS NAL212_2710 NC_015222.1 2667239 2667598 D PFAM: Protein of unknown function DUF3106; KEGG: nmu:Nmul_A1053 hypothetical protein; hypothetical protein 2667239..2667598 Nitrosomonas sp. AL212 10299250 YP_004295663.1 CDS NAL212_2711 NC_015222.1 2667802 2670090 D PFAM: ABC transporter, transmembrane domain; ABC transporter-like; KEGG: nmu:Nmul_A2254 ABC transporter related; SMART: ATPase, AAA+ type, core; xenobiotic-transporting ATPase 2667802..2670090 Nitrosomonas sp. AL212 10299251 YP_004295664.1 CDS NAL212_2712 NC_015222.1 2670091 2670564 D PFAM: Domain of unknown function DUF1854; KEGG: app:CAP2UW1_3889 hypothetical protein; hypothetical protein 2670091..2670564 Nitrosomonas sp. AL212 10299252 YP_004295665.1 CDS NAL212_2713 NC_015222.1 2670469 2671839 R PFAM: Uncharacterised protein family UPF0027; KEGG: rsl:RPSI07_3186 hypothetical protein; hypothetical protein complement(2670469..2671839) Nitrosomonas sp. AL212 10299253 YP_004295666.1 CDS NAL212_2715 NC_015222.1 2672357 2673664 R PFAM: Transposase, IS4-like; KEGG: dde:Dde_2849 ISPg7, transposase; transposase IS4 family protein complement(2672357..2673664) Nitrosomonas sp. AL212 10299255 YP_004295667.1 CDS NAL212_2716 NC_015222.1 2675880 2677274 R KEGG: net:Neut_2155 tRNA modification GTPase TrmE; TIGRFAM: tRNA modification GTPase TrmE; Small GTP-binding protein; PFAM: GTP-binding protein TrmE, N-terminal; GTP-binding protein, HSR1-related; tRNA modification GTPase TrmE complement(2675880..2677274) Nitrosomonas sp. AL212 10299256 YP_004295668.1 CDS NAL212_2717 NC_015222.1 2677452 2679380 R KEGG: neu:NE0387 60Kd inner membrane protein; TIGRFAM: Membrane insertion protein, OxaA/YidC, bacterial; Membrane insertion protein, OxaA/YidC; PFAM: Membrane insertion protein, OxaA/YidC; YidC/Oxa1 family membrane protein insertase complement(2677452..2679380) Nitrosomonas sp. AL212 10299257 YP_004295669.1 CDS NAL212_2718 NC_015222.1 2679591 2679977 R PFAM: Ribonuclease P; manually curated; TIGRFAM: Ribonuclease P; KEGG: net:Neut_2152 ribonuclease P protein component; HAMAP: Ribonuclease P; ribonuclease P protein component complement(2679591..2679977) Nitrosomonas sp. AL212 10299258 YP_004295670.1 CDS NAL212_2719 NC_015222.1 2679991 2680125 R KEGG: tmz:Tmz1t_2334 50S ribosomal protein L34; TIGRFAM: Ribosomal protein L34; PFAM: Ribosomal protein L34; 50S ribosomal protein L34 complement(2679991..2680125) Nitrosomonas sp. AL212 10299259 YP_004295671.1 CDS NAL212_2720 NC_015222.1 2680611 2681963 D KEGG: net:Neut_1510 exodeoxyribonuclease VII large subunit; TIGRFAM: Exonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; exodeoxyribonuclease VII large subunit 2680611..2681963 Nitrosomonas sp. AL212 10299260 YP_004295672.1 CDS NAL212_2721 NC_015222.1 2682008 2682382 D PFAM: Protein of unknown function DUF423; KEGG: nmu:Nmul_A1031 hypothetical protein; hypothetical protein 2682008..2682382 Nitrosomonas sp. AL212 10299261 YP_004295673.1 CDS NAL212_2722 NC_015222.1 2682541 2682885 R KEGG: nmu:Nmul_A0729 hypothetical protein; hypothetical protein complement(2682541..2682885) Nitrosomonas sp. AL212 10299262 YP_004295674.1 CDS NAL212_2723 NC_015222.1 2683056 2683574 D PFAM: Disulphide bond formation protein DsbB/BdbC; KEGG: net:Neut_1513 disulphide bond formation protein DsbB; disulfide bond formation protein DsbB 2683056..2683574 Nitrosomonas sp. AL212 10299263 YP_004295675.1 CDS NAL212_2724 NC_015222.1 2683587 2684498 R KEGG: nmu:Nmul_A0748 tyrosine recombinase XerD; TIGRFAM: Tyrosine recombinase XerD; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; tyrosine recombinase XerD complement(2683587..2684498) Nitrosomonas sp. AL212 10299264 YP_004295676.1 CDS NAL212_2725 NC_015222.1 2684485 2684988 R KEGG: nmu:Nmul_A0747 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; methylated-DNA--protein-cysteine methyltransferase complement(2684485..2684988) Nitrosomonas sp. AL212 10299265 YP_004295677.1 CDS NAL212_2727 NC_015222.1 2687083 2688699 D KEGG: amr:AM1_6172 IS5 family transposase; IS5 family transposase 2687083..2688699 Nitrosomonas sp. AL212 10299267 YP_004295678.1 CDS NAL212_2728 NC_015222.1 2689055 2690497 R TIGRFAM: NAD(P)H-quinone oxidoreductase, subunit N/subunit 2; KEGG: neu:NE1764 NADH dehydrogenase subunit N; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; proton-translocating NADH-quinone oxidoreductase, chain N complement(2689055..2690497) Nitrosomonas sp. AL212 10299268 YP_004295679.1 CDS NAL212_2729 NC_015222.1 2690548 2692032 R TIGRFAM: NADH-quinone oxidoreductase, chain M/4; KEGG: nmu:Nmul_A1103 NADH dehydrogenase subunit M; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 4, N-terminal; proton-translocating NADH-quinone oxidoreductase subunit M complement(2690548..2692032) Nitrosomonas sp. AL212 10299269 YP_004295680.1 CDS NAL212_2730 NC_015222.1 2692134 2694074 R TIGRFAM: NADH-plastoquinone oxidoreductase, chain 5; KEGG: nmu:Nmul_A1102 proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal; NADH dehydrogenase subunit 5, C-terminal; proton-translocating NADH-quinone oxidoreductase subunit L complement(2692134..2694074) Nitrosomonas sp. AL212 10299270 YP_004295681.1 CDS NAL212_2731 NC_015222.1 2694122 2694427 R KEGG: net:Neut_0932 NADH dehydrogenase subunit K; HAMAP: NADH-ubiquinone oxidoreductase chain 4L/K; PFAM: NADH-ubiquinone oxidoreductase chain 4L/K; NAD(P)H-quinone oxidoreductase subunit 4L complement(2694122..2694427) Nitrosomonas sp. AL212 10299271 YP_004295682.1 CDS NAL212_2732 NC_015222.1 2694487 2695092 R PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 6; KEGG: nmu:Nmul_A1100 NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; NADH-ubiquinone/plastoquinone oxidoreductase chain 6 complement(2694487..2695092) Nitrosomonas sp. AL212 10299272 YP_004295683.1 CDS NAL212_2733 NC_015222.1 2695112 2695600 R TIGRFAM: NADH-quinone oxidoreductase, chain I; KEGG: net:Neut_0930 NADH dehydrogenase subunit I; PFAM: 4Fe-4S binding domain; NADH-quinone oxidoreductase subunit I complement(2695112..2695600) Nitrosomonas sp. AL212 10299273 YP_004295684.1 CDS NAL212_2734 NC_015222.1 2695616 2696713 R KEGG: neu:NE1770 respiratory-chain NADH dehydrogenase subunit 1; PFAM: NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H; NADH dehydrogenase (quinone) complement(2695616..2696713) Nitrosomonas sp. AL212 10299274 YP_004295685.1 CDS NAL212_2735 NC_015222.1 2696736 2699156 R SMART: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; Molybdopterin oxidoreductase, Fe4S4 domain; TIGRFAM: NADH:ubiquinone oxidoreductase, subunit G; KEGG: nmu:Nmul_A1097 NADH dehydrogenase subunit G; PFAM: Molybdopterin oxidoreductase; Ferredoxin; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; NADH-quinone oxidoreductase subunit G complement(2696736..2699156) Nitrosomonas sp. AL212 10299275 YP_004295686.1 CDS NAL212_2736 NC_015222.1 2699226 2700503 R SMART: NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; TIGRFAM: NADH ubiquinone oxidoreductase, F subunit; KEGG: neu:NE1772 respiratory-chain NADH dehydrogenase 51 Kd subunit; PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; Soluble ligand binding domain; NADH-quinone oxidoreductase subunit F complement(2699226..2700503) Nitrosomonas sp. AL212 10299276 YP_004295687.1 CDS NAL212_2737 NC_015222.1 2700500 2700976 R TIGRFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit; KEGG: neu:NE1773 NADH dehydrogenase subunit E; PFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit; NADH-quinone oxidoreductase subunit E complement(2700500..2700976) Nitrosomonas sp. AL212 10299277 YP_004295688.1 CDS NAL212_2738 NC_015222.1 2700979 2702232 R TIGRFAM: NADH dehydrogenase I, subunit D; KEGG: nmu:Nmul_A1094 NADH dehydrogenase subunit D; PFAM: NADH-quinone oxidoreductase, subunit D; NADH dehydrogenase I subunit D complement(2700979..2702232) Nitrosomonas sp. AL212 10299278 YP_004295689.1 CDS NAL212_2739 NC_015222.1 2702282 2702905 R KEGG: neu:NE1775 NADH dehydrogenase subunit C; TIGRFAM: NADH dehydrogenase, subunit C; PFAM: NADH:ubiquinone oxidoreductase, 30kDa subunit; NADH (or F420H2) dehydrogenase subunit C complement(2702282..2702905) Nitrosomonas sp. AL212 10299279 YP_004295690.1 CDS NAL212_2740 NC_015222.1 2702918 2703394 R TIGRFAM: NADH-ubiquinone oxidoreductase, 20 Kd subunit; KEGG: neu:NE1776 NADH dehydrogenase subunit B; PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; NADH-quinone oxidoreductase subunit B complement(2702918..2703394) Nitrosomonas sp. AL212 10299280 YP_004295691.1 CDS NAL212_2741 NC_015222.1 2703399 2703755 R manually curated; HAMAP: NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid; KEGG: nmu:Nmul_A1091 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 3; NAD(P)H-quinone oxidoreductase subunit 3 complement(2703399..2703755) Nitrosomonas sp. AL212 10299281 YP_004295692.1 CDS NAL212_2742 NC_015222.1 2703945 2704241 R PFAM: Preprotein translocase SecG subunit; KEGG: neu:NE1778 preprotein translocase subunit SecG; preprotein translocase subunit SecG complement(2703945..2704241) Nitrosomonas sp. AL212 10299283 YP_004295693.1 CDS NAL212_2743 NC_015222.1 2704347 2705102 R TIGRFAM: Triosephosphate isomerase; KEGG: nmu:Nmul_A1089 triosephosphate isomerase; PFAM: Triosephosphate isomerase; triosephosphate isomerase complement(2704347..2705102) Nitrosomonas sp. AL212 10299284 YP_004295694.1 CDS NAL212_2744 NC_015222.1 2705346 2706140 R SMART: ATPase, AAA+ type, core; TIGRFAM: Phosphate transport system permease protein 1; KEGG: nmu:Nmul_A1088 phosphate ABC transporter ATP-binding protein; PFAM: ABC transporter-like; phosphate ABC transporter ATPase complement(2705346..2706140) Nitrosomonas sp. AL212 10299285 YP_004295695.1 CDS NAL212_2745 NC_015222.1 2706142 2707068 R KEGG: nmu:Nmul_A1087 phosphate ABC transporter permease; TIGRFAM: Phosphate transport system permease protein 2; PFAM: Binding-protein-dependent transport systems inner membrane component; phosphate ABC transporter permease complement(2706142..2707068) Nitrosomonas sp. AL212 10299286 YP_004295696.1 CDS NAL212_2746 NC_015222.1 2707148 2708080 R KEGG: nmu:Nmul_A1086 phosphate ABC transporter permease; TIGRFAM: Phosphate ABC transporter, permease protein PstC; PFAM: Binding-protein-dependent transport systems inner membrane component; phosphate ABC transporter permease complement(2707148..2708080) Nitrosomonas sp. AL212 10299287 YP_004295697.1 CDS NAL212_2747 NC_015222.1 2708379 2709068 R PFAM: NapC/NirT cytochrome c, N-terminal; KEGG: neu:NE2336 putative tetraheme C-cytochrome; NapC/NirT cytochrome c domain-containing protein complement(2708379..2709068) Nitrosomonas sp. AL212 10299288 YP_004295698.1 CDS NAL212_2748 NC_015222.1 2709068 2709790 R KEGG: neu:NE2337 cytochrome c-554 precursor; cytochrome c-554 complement(2709068..2709790) Nitrosomonas sp. AL212 10299289 YP_004295699.1 CDS NAL212_2749 NC_015222.1 2709916 2710863 R KEGG: nmu:Nmul_A2661 hypothetical protein; hypothetical protein complement(2709916..2710863) Nitrosomonas sp. AL212 10299290 YP_004295700.1 CDS NAL212_2750 NC_015222.1 2710944 2712656 R KEGG: neu:NE2339 hydroxylamine oxidoreductase; hydroxylamine oxidase complement(2710944..2712656) Nitrosomonas sp. AL212 10299291 YP_004295701.1 CDS NAL212_2751 NC_015222.1 2712874 2713596 R KEGG: neu:NE0183 hypothetical protein; hypothetical protein complement(2712874..2713596) Nitrosomonas sp. AL212 10299292 YP_004295702.1 CDS NAL212_2752 NC_015222.1 2713998 2714747 D SMART: Histidine phosphatase superfamily, clade-1; TIGRFAM: Phosphoglycerate mutase 1; KEGG: neu:NE1780 phosphoglyceromutase; PFAM: Histidine phosphatase superfamily, clade-1; phosphoglycerate mutase family protein 2713998..2714747 Nitrosomonas sp. AL212 10299293 YP_004295703.1 CDS NAL212_2753 NC_015222.1 2714828 2716012 D KEGG: nmu:Nmul_A1120 peptidase M23B; manually curated; PFAM: Peptidase M23; peptidase M23 2714828..2716012 Nitrosomonas sp. AL212 10299294 YP_004295704.1 CDS NAL212_2754 NC_015222.1 2716060 2717496 D TIGRFAM: Peptidase S41A, C-terminal peptidase; PFAM: Peptidase S41; PDZ/DHR/GLGF; KEGG: neu:NE1782 carboxy-terminal processing protease; SMART: Peptidase S41; PDZ/DHR/GLGF; carboxyl-terminal protease 2716060..2717496 Nitrosomonas sp. AL212 10299295 YP_004295705.1 CDS NAL212_2755 NC_015222.1 2717518 2718276 D PFAM: UBA/THIF-type NAD/FAD binding fold; MoeZ/MoeB; KEGG: neu:NE1783 NAD binding site:UBA/ThiF-type NAD/FAD binding fold; UBA/THIF-type NAD/FAD binding protein 2717518..2718276 Nitrosomonas sp. AL212 10299296 YP_004295706.1 CDS NAL212_2756 NC_015222.1 2718312 2718956 R PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: nmu:Nmul_A1117 nucleoid occlusion protein; TetR family transcriptional regulator complement(2718312..2718956) Nitrosomonas sp. AL212 10299297 YP_004295707.1 CDS NAL212_2757 NC_015222.1 2719210 2720064 D KEGG: vpo:Kpol_1041p41 hypothetical protein; hypothetical protein 2719210..2720064 Nitrosomonas sp. AL212 10299298 YP_004295708.1 CDS NAL212_2758 NC_015222.1 2720160 2720468 R KEGG: tga:TGAM_1426 DNA topoisomerase VI subunit A; DNA topoisomerase VI subunit A complement(2720160..2720468) Nitrosomonas sp. AL212 10299299 YP_004295709.1 CDS NAL212_2759 NC_015222.1 2720473 2720763 R KEGG: mkm:Mkms_0973 acyltransferase 3; hypothetical protein complement(2720473..2720763) Nitrosomonas sp. AL212 10299300 YP_004295710.1 CDS NAL212_2760 NC_015222.1 2720952 2721287 R KEGG: vsp:VS_II0451 hypothetical protein; hypothetical protein complement(2720952..2721287) Nitrosomonas sp. AL212 10299301 YP_004295711.1 CDS NAL212_2761 NC_015222.1 2721310 2721528 R KEGG: pna:Pnap_3867 hypothetical protein; hypothetical protein complement(2721310..2721528) Nitrosomonas sp. AL212 10299302 YP_004295712.1 CDS NAL212_2762 NC_015222.1 2721525 2721959 R KEGG: neu:NE0971 hypothetical protein; hypothetical protein complement(2721525..2721959) Nitrosomonas sp. AL212 10299303 YP_004295713.1 CDS NAL212_2763 NC_015222.1 2722062 2722382 R PFAM: Small multidrug resistance protein; KEGG: gsu:GSU0707 SugE protein; small multidrug resistance protein complement(2722062..2722382) Nitrosomonas sp. AL212 10299304 YP_004295714.1 CDS NAL212_2764 NC_015222.1 2722507 2724306 R KEGG: rhi:NGR_a03200 hypothetical 47.1 kDa protein; hypothetical protein complement(2722507..2724306) Nitrosomonas sp. AL212 10299305 YP_004295715.1 CDS NAL212_2765 NC_015222.1 2724339 2725814 R TIGRFAM: Glycogen/starch synthases, ADP-glucose type; KEGG: net:Neut_0608 glycogen/starch synthases, ADP-glucose type; PFAM: Starch synthase, catalytic domain; Glycosyl transferase, group 1; glycogen/starch synthase complement(2724339..2725814) Nitrosomonas sp. AL212 10299306 YP_004295716.1 CDS NAL212_2766 NC_015222.1 2725826 2727460 R KEGG: neu:NE2263 glucose-6-phosphate isomerase; PFAM: Phosphoglucose isomerase (PGI); glucose-6-phosphate isomerase complement(2725826..2727460) Nitrosomonas sp. AL212 10299307 YP_004295717.1 CDS NAL212_2767 NC_015222.1 2727509 2729515 R KEGG: neu:NE2032 glycosy hydrolase family protein; PFAM: Alpha-amylase/4-alpha-glucanotransferase, C-terminal; Alpha-amylase/4-alpha-glucanotransferase, central domain; Glycoside hydrolase, family 57, N-terminal; 4-alpha-glucanotransferase complement(2727509..2729515) Nitrosomonas sp. AL212 10299308 YP_004295718.1 CDS NAL212_2768 NC_015222.1 2729591 2731303 R PFAM: Glycoside hydrolase, family 57, N-terminal; KEGG: nmu:Nmul_A0719 glycoside hydrolase family protein; glycoside hydrolase family protein complement(2729591..2731303) Nitrosomonas sp. AL212 10299309 YP_004295719.1 CDS NAL212_2769 NC_015222.1 2731440 2732756 R TIGRFAM: Glucose-1-phosphate adenylyltransferase; KEGG: neu:NE2030 glucose-1-phosphate adenylyltransferase; PFAM: Nucleotidyl transferase; glucose-1-phosphate adenylyltransferase complement(2731440..2732756) Nitrosomonas sp. AL212 10299310 YP_004295720.1 CDS NAL212_2770 NC_015222.1 2732905 2735103 D TIGRFAM: 1,4-alpha-glucan-branching enzyme; KEGG: net:Neut_1291 glycogen branching enzyme; PFAM: Glycoside hydrolase, family 13, N-terminal; Alpha-amylase, C-terminal all beta; Glycosyl hydrolase, family 13, catalytic domain; 1,4-alpha-glucan-branching protein 2732905..2735103 Nitrosomonas sp. AL212 10299311 YP_004295721.1 CDS NAL212_2771 NC_015222.1 2735125 2735457 R PFAM: Small multidrug resistance protein; KEGG: dal:Dalk_0650 small multidrug resistance protein; small multidrug resistance protein complement(2735125..2735457) Nitrosomonas sp. AL212 10299312 YP_004295722.1 CDS NAL212_2772 NC_015222.1 2735565 2736200 R PFAM: PEP-CTERM bacterial; KEGG: mei:Msip34_1313 protein of unknown function DUF1555; hypothetical protein complement(2735565..2736200) Nitrosomonas sp. AL212 10299313 YP_004295723.1 CDS NAL212_2773 NC_015222.1 2736843 2737040 D KEGG: hba:Hbal_1382 SmpA/OmlA domain protein; hypothetical protein 2736843..2737040 Nitrosomonas sp. AL212 10299314 YP_004295724.1 CDS NAL212_2774 NC_015222.1 2738044 2738268 D KEGG: nmu:Nmul_A1140 hypothetical protein; hypothetical protein 2738044..2738268 Nitrosomonas sp. AL212 10299315 YP_004295725.1 CDS NAL212_2775 NC_015222.1 2738866 2740938 D KEGG: cja:CJA_3563 hypothetical protein; hypothetical protein 2738866..2740938 Nitrosomonas sp. AL212 10299316 YP_004295726.1 CDS NAL212_2776 NC_015222.1 2740984 2742258 D PFAM: Cytochrome P450; KEGG: xau:Xaut_0387 cytochrome P450; cytochrome P450 2740984..2742258 Nitrosomonas sp. AL212 10299317 YP_004295727.1 CDS NAL212_2777 NC_015222.1 2742990 2743883 D KEGG: ppr:PBPRB1378 hypothetical protein; hypothetical protein 2742990..2743883 Nitrosomonas sp. AL212 10299318 YP_004295728.1 CDS NAL212_2778 NC_015222.1 2744032 2744721 D KEGG: mxa:MXAN_7123 sensor histidine kinase; hypothetical protein 2744032..2744721 Nitrosomonas sp. AL212 10299319 YP_004295729.1 CDS NAL212_2779 NC_015222.1 2744878 2745621 R SMART: Cyclic nucleotide-binding domain; KEGG: rfr:Rfer_1647 CRP/FNR family transcriptional regulator; CarD family transcriptional regulator complement(2744878..2745621) Nitrosomonas sp. AL212 10299320 YP_004295730.1 CDS NAL212_2780 NC_015222.1 2746022 2746507 R KEGG: mta:Moth_0961 ABC-type transport system involved in multi-copper enzyme maturation, permease component; hypothetical protein complement(2746022..2746507) Nitrosomonas sp. AL212 10299321 YP_004295731.1 CDS NAL212_2781 NC_015222.1 2746525 2746812 R PFAM: Protein of unknown function DUF883, ElaB; KEGG: pbr:PB2503_10114 hypothetical protein; hypothetical protein complement(2746525..2746812) Nitrosomonas sp. AL212 10299322 YP_004295732.1 CDS NAL212_2783 NC_015222.1 2747369 2748457 R PFAM: Uncharacterised protein family UPF0118; KEGG: mmb:Mmol_2085 protein of unknown function UPF0118; hypothetical protein complement(2747369..2748457) Nitrosomonas sp. AL212 10299324 YP_004295733.1 CDS NAL212_2784 NC_015222.1 2748632 2749834 R PFAM: Catalase-related subgroup; KEGG: abb:ABBFA_001723 hypothetical protein; catalase related subgroup domain-containing protein complement(2748632..2749834) Nitrosomonas sp. AL212 10299325 YP_004295734.1 CDS NAL212_2785 NC_015222.1 2750173 2750928 R PFAM: Integral membrane protein TerC; KEGG: nde:NIDE3790 membrane protein TerC; integral membrane protein TerC complement(2750173..2750928) Nitrosomonas sp. AL212 10299326 YP_004295735.1 CDS NAL212_2786 NC_015222.1 2751207 2751683 R KEGG: geo:Geob_3784 hypothetical protein; hypothetical protein complement(2751207..2751683) Nitrosomonas sp. AL212 10299327 YP_004295736.1 CDS NAL212_2787 NC_015222.1 2752116 2752403 R KEGG: sfr:Sfri_2036 hypothetical protein; hypothetical protein complement(2752116..2752403) Nitrosomonas sp. AL212 10299328 YP_004295737.1 CDS NAL212_2788 NC_015222.1 2752545 2752847 R KEGG: net:Neut_2358 hypothetical protein; hypothetical protein complement(2752545..2752847) Nitrosomonas sp. AL212 10299329 YP_004295738.1 CDS NAL212_2789 NC_015222.1 2752879 2753079 R PFAM: CsbD-like; KEGG: net:Neut_2359 CsbD family protein; CsbD family protein complement(2752879..2753079) Nitrosomonas sp. AL212 10299330 YP_004295739.1 CDS NAL212_2790 NC_015222.1 2753197 2753400 R KEGG: net:Neut_2360 hypothetical protein; HAMAP: Protein of unknown function DUF1328; PFAM: Protein of unknown function DUF1328; hypothetical protein complement(2753197..2753400) Nitrosomonas sp. AL212 10299331 YP_004295740.1 CDS NAL212_2791 NC_015222.1 2753851 2754051 R PFAM: CsbD-like; KEGG: net:Neut_2359 CsbD family protein; CsbD family protein complement(2753851..2754051) Nitrosomonas sp. AL212 10299332 YP_004295741.1 CDS NAL212_2792 NC_015222.1 2754465 2754728 D KEGG: pva:Pvag_0471 uncharacterized protein YohN precursor; hypothetical protein 2754465..2754728 Nitrosomonas sp. AL212 10299333 YP_004295742.1 CDS NAL212_2793 NC_015222.1 2755230 2756726 D KEGG: mea:Mex_1p1410 hypothetical protein; hypothetical protein 2755230..2756726 Nitrosomonas sp. AL212 10299334 YP_004295743.1 CDS NAL212_2794 NC_015222.1 2756878 2758200 R PFAM: Protein of unknown function DUF1597; KEGG: nmu:Nmul_A0438 hypothetical protein; hypothetical protein complement(2756878..2758200) Nitrosomonas sp. AL212 10299335 YP_004295744.1 CDS NAL212_2795 NC_015222.1 2758396 2759508 D PFAM: Lytic transglycosylase-like, catalytic; KEGG: mca:MCA2115 transglycosylase SLT domain-containing protein; Lytic transglycosylase catalytic 2758396..2759508 Nitrosomonas sp. AL212 10299336 YP_004295745.1 CDS NAL212_2796 NC_015222.1 2759527 2760885 R KEGG: tgr:Tgr7_0333 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain; succinate-semialdehyde dehydrogenase complement(2759527..2760885) Nitrosomonas sp. AL212 10299337 YP_004295746.1 CDS NAL212_2797 NC_015222.1 2760973 2761194 R PFAM: Protein of unknown function DUF2798; KEGG: jan:Jann_0888 hypothetical protein; hypothetical protein complement(2760973..2761194) Nitrosomonas sp. AL212 10299338 YP_004295747.1 CDS NAL212_2798 NC_015222.1 2761471 2762208 R SMART: Exonuclease; TIGRFAM: DNA polymerase 3, epsilon subunit; DNA polymerase III, epsilon subunit; KEGG: net:Neut_2175 DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T/DNA polymerase III; DNA polymerase III subunit epsilon complement(2761471..2762208) Nitrosomonas sp. AL212 10299339 YP_004295748.1 CDS NAL212_2799 NC_015222.1 2762234 2762689 R KEGG: nmu:Nmul_A1619 ribonuclease H; PFAM: Ribonuclease H domain; ribonuclease H complement(2762234..2762689) Nitrosomonas sp. AL212 10299340 YP_004295749.1 CDS NAL212_2800 NC_015222.1 2762692 2763462 R PFAM: Methyltransferase type 11; KEGG: nmu:Nmul_A1620 generic methyl-transferase; type 11 methyltransferase complement(2762692..2763462) Nitrosomonas sp. AL212 10299341 YP_004295750.1 CDS NAL212_2801 NC_015222.1 2763557 2764330 D SMART: Beta-lactamase-like; TIGRFAM: Hydroxyacylglutathione hydrolase; KEGG: neu:NE0138 metallo-beta-lactamase superfamily protein; PFAM: Beta-lactamase-like; hydroxyacylglutathione hydrolase 2763557..2764330 Nitrosomonas sp. AL212 10299342 YP_004295751.1 CDS NAL212_2802 NC_015222.1 2764471 2766165 R PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain; TIGRFAM: Glutaminyl-tRNA synthetase, class Ic; HAMAP: Glutaminyl-tRNA synthetase, bacterial; KEGG: nmu:Nmul_A2083 glutaminyl-tRNA synthetase; glutaminyl-tRNA synthetase complement(2764471..2766165) Nitrosomonas sp. AL212 10299343 YP_004295752.1 CDS NAL212_2803 NC_015222.1 2766455 2766889 D KEGG: net:Neut_0762 50S ribosomal protein L13; TIGRFAM: Ribosomal protein L13, bacterial-type; PFAM: Ribosomal protein L13; 50S ribosomal protein L13 2766455..2766889 Nitrosomonas sp. AL212 10299344 YP_004295753.1 CDS NAL212_2804 NC_015222.1 2766894 2767286 D KEGG: neu:NE1483 30S ribosomal protein S9; manually curated; PFAM: Ribosomal protein S9; 30S ribosomal protein S9 2766894..2767286 Nitrosomonas sp. AL212 10299345 YP_004295754.1 CDS NAL212_2805 NC_015222.1 2767397 2768425 D SMART: Semialdehyde dehydrogenase, NAD-binding; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase, type 1; KEGG: neu:NE1482 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase, NAD-binding; Semialdehyde dehydrogenase, dimerisation domain; N-acetyl-gamma-glutamyl-phosphate reductase 2767397..2768425 Nitrosomonas sp. AL212 10299346 YP_004295755.1 CDS NAL212_2806 NC_015222.1 2768618 2769220 D KEGG: neu:NE1481 hypothetical protein; hypothetical protein 2768618..2769220 Nitrosomonas sp. AL212 10299347 YP_004295756.1 CDS NAL212_2807 NC_015222.1 2769233 2769697 D PFAM: Protein of unknown function DUF583; KEGG: slt:Slit_2453 protein of unknown function DUF583; hypothetical protein 2769233..2769697 Nitrosomonas sp. AL212 10299348 YP_004295757.1 CDS NAL212_2808 NC_015222.1 2769755 2770099 D KEGG: nmu:Nmul_A0556 HesB/YadR/YfhF; TIGRFAM: FeS cluster insertion; PFAM: FeS cluster biogenesis; iron-sulfur cluster assembly accessory protein 2769755..2770099 Nitrosomonas sp. AL212 10299349 YP_004295758.1 CDS NAL212_2809 NC_015222.1 2770122 2771201 R PFAM: Anhydro-N-acetylmuramic acid kinase; KEGG: neu:NE1429 anhydro-N-acetylmuramic acid kinase; hypothetical protein complement(2770122..2771201) Nitrosomonas sp. AL212 10299350 YP_004295759.1 CDS NAL212_2810 NC_015222.1 2771324 2772661 R PFAM: Peptidase M23; KEGG: neu:NE1430 M23/M37 familypeptidase; peptidase M23 complement(2771324..2772661) Nitrosomonas sp. AL212 10299351 YP_004295760.1 CDS NAL212_2811 NC_015222.1 2772805 2774007 D KEGG: nmu:Nmul_A0502 tyrosyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib; RNA-binding S4; TIGRFAM: Tyrosyl-tRNA synthetase, class Ib; HAMAP: Tyrosyl-tRNA synthetase, class Ib; SMART: RNA-binding S4; tyrosyl-tRNA synthetase 2772805..2774007 Nitrosomonas sp. AL212 10299352 YP_004295761.1 CDS NAL212_2812 NC_015222.1 2774277 2775650 D KEGG: nmu:Nmul_A1799 DEAD/DEAH box helicase-like; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; DEAD/DEAH box helicase domain-containing protein 2774277..2775650 Nitrosomonas sp. AL212 10299353 YP_004295762.1 CDS NAL212_2813 NC_015222.1 2775974 2776834 R KEGG: cch:Cag_0532 hypothetical protein; hypothetical protein complement(2775974..2776834) Nitrosomonas sp. AL212 10299354 YP_004295763.1 CDS NAL212_2814 NC_015222.1 2777362 2778876 D TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; PAS fold; PAS fold-4; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: npu:Npun_F3797 multi-sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS; PAC motif; PAS/PAC sensor signal transduction histidine kinase 2777362..2778876 Nitrosomonas sp. AL212 10299355 YP_004295764.1 CDS NAL212_2815 NC_015222.1 2778886 2779518 D KEGG: cpi:Cpin_3979 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; two component transcriptional regulator, LuxR family 2778886..2779518 Nitrosomonas sp. AL212 10299356 YP_004295765.1 CDS NAL212_2816 NC_015222.1 2779755 2780822 D PFAM: Diacylglycerol kinase, catalytic domain; KEGG: mpt:Mpe_A2183 hypothetical protein; diacylglycerol kinase catalytic subunit 2779755..2780822 Nitrosomonas sp. AL212 10299357 YP_004295766.1 CDS NAL212_2817 NC_015222.1 2780840 2781682 D PFAM: Metallo-dependent phosphatase; KEGG: mpt:Mpe_A2182 putative DNA repair exonuclease; metallophosphoesterase 2780840..2781682 Nitrosomonas sp. AL212 10299358 YP_004295767.1 CDS NAL212_2818 NC_015222.1 2781766 2782653 D KEGG: nmu:Nmul_A2766 ammonia monooxygenase/methane monooxygenase, subunit C; TIGRFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit C; PFAM: Ammonia monooxygenase/particulate methane monooxygenase, subunit C; methane monooxygenase/ammonia monooxygenase subunit C 2781766..2782653 Nitrosomonas sp. AL212 10299359 YP_004295768.1 CDS NAL212_2819 NC_015222.1 2782768 2783319 D KEGG: nmu:Nmul_A1398 hypothetical protein; hypothetical protein 2782768..2783319 Nitrosomonas sp. AL212 10299360 YP_004295769.1 CDS NAL212_2820 NC_015222.1 2783418 2783963 R KEGG: net:Neut_2282 proline-rich region; proline-rich region complement(2783418..2783963) Nitrosomonas sp. AL212 10299361 YP_004295770.1 CDS NAL212_2821 NC_015222.1 2784389 2785375 D KEGG: neu:NE0773 malate dehydrogenase; TIGRFAM: Malate dehydrogenase, NAD/NADP; PFAM: Lactate/malate dehydrogenase, C-terminal; Lactate/malate dehydrogenase, N-terminal; malate dehydrogenase 2784389..2785375 Nitrosomonas sp. AL212 10299362 YP_004295771.1 CDS NAL212_2822 NC_015222.1 2785414 2786634 R KEGG: hch:HCH_02605 membrane-bound lytic murein transglycosylase B; TIGRFAM: Lytic murein transglycosylase; PFAM: Peptidoglycan binding-like; lytic murein transglycosylase complement(2785414..2786634) Nitrosomonas sp. AL212 10299363 YP_004295772.1 CDS NAL212_2823 NC_015222.1 2786691 2787131 R PFAM: Ferric-uptake regulator; KEGG: neu:NE0616 leucine-rich repeat-containing ferric uptake regulator; ferric uptake regulator, Fur family complement(2786691..2787131) Nitrosomonas sp. AL212 10299364 YP_004295773.1 CDS NAL212_2824 NC_015222.1 2787207 2787608 D PFAM: Lipoprotein SmpA/OmlA; KEGG: nmu:Nmul_A0476 SmpA/OmlA; SmpA/OmlA domain-containing protein 2787207..2787608 Nitrosomonas sp. AL212 10299365 YP_004295774.1 CDS NAL212_2825 NC_015222.1 2787664 2788470 D TIGRFAM: Dihydrodipicolinate reductase, bacterial/plant; KEGG: net:Neut_1940 dihydrodipicolinate reductase; PFAM: Dihydrodipicolinate reductase, C-terminal; Dihydrodipicolinate reductase, N-terminal; dihydrodipicolinate reductase 2787664..2788470 Nitrosomonas sp. AL212 10299366 YP_004295775.1 CDS NAL212_2826 NC_015222.1 2788482 2789285 D PFAM: Metallo-dependent phosphatase; TIGRFAM: Bis(5'-nucleosyl)-tetraphosphatase (symmetrical); KEGG: nmu:Nmul_A0206 diadenosine tetraphosphatase; HAMAP: Bis(5'-nucleosyl)-tetraphosphatase (symmetrical); bis(5'-nucleosyl)-tetraphosphatase, symmetrical 2788482..2789285 Nitrosomonas sp. AL212 10299367 YP_004295776.1 CDS NAL212_2827 NC_015222.1 2789236 2790030 R KEGG: neu:NE0612 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase complement(2789236..2790030) Nitrosomonas sp. AL212 10299368 YP_004295777.1 CDS NAL212_2828 NC_015222.1 2790190 2790507 R PFAM: Domain of unknown function DUF190; KEGG: tal:Thal_0656 nitrogen regulatory protein P-II; hypothetical protein complement(2790190..2790507) Nitrosomonas sp. AL212 10299369 YP_004295778.1 CDS NAL212_2829 NC_015222.1 2790557 2791513 R PFAM: Protein of unknown function DUF897; KEGG: tkm:TK90_0845 protein of unknown function DUF897; hypothetical protein complement(2790557..2791513) Nitrosomonas sp. AL212 10299370 YP_004295779.1 CDS NAL212_2830 NC_015222.1 2791814 2793088 R KEGG: nmu:Nmul_A0707 periplasmic sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; integral membrane sensor signal transduction histidine kinase complement(2791814..2793088) Nitrosomonas sp. AL212 10299371 YP_004295780.1 CDS NAL212_2831 NC_015222.1 2793069 2793758 R KEGG: nmu:Nmul_A0706 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; two component transcriptional regulator, winged helix family complement(2793069..2793758) Nitrosomonas sp. AL212 10299372 YP_004295781.1 CDS NAL212_2832 NC_015222.1 2793788 2794861 R TIGRFAM: Uroporphyrinogen decarboxylase HemE; KEGG: nmu:Nmul_A0705 uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); uroporphyrinogen decarboxylase complement(2793788..2794861) Nitrosomonas sp. AL212 10299373 YP_004295782.1 CDS NAL212_2833 NC_015222.1 2794932 2795144 D KEGG: psa:PST_1428 lipoprotein; hypothetical protein 2794932..2795144 Nitrosomonas sp. AL212 10299374 YP_004295783.1 CDS NAL212_2834 NC_015222.1 2795172 2796293 R TIGRFAM: Deoxyguanosinetriphosphate triphosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; KEGG: nmu:Nmul_A0704 deoxyguanosinetriphosphate triphosphohydrolase-like protein; SMART: Metal-dependent phosphohydrolase, HD domain; deoxyguanosinetriphosphate triphosphohydrolase complement(2795172..2796293) Nitrosomonas sp. AL212 10299375 YP_004295784.1 CDS NAL212_2835 NC_015222.1 2796286 2797965 R PFAM: 3-dehydroquinate synthase AroB; Shikimate kinase; TIGRFAM: 3-dehydroquinate synthase AroB, subgroup; HAMAP: Shikimate kinase; 3-dehydroquinate synthase AroB, subgroup; KEGG: slt:Slit_0113 3-dehydroquinate synthase; shikimate kinase complement(2796286..2797965) Nitrosomonas sp. AL212 10299376 YP_004295785.1 CDS NAL212_2836 NC_015222.1 2798260 2799318 R TIGRFAM: Conserved hypothetical protein CHP03032; KEGG: npu:Npun_F1456 hypothetical protein; hypothetical protein complement(2798260..2799318) Nitrosomonas sp. AL212 10299377 YP_004295786.1 CDS NAL212_2837 NC_015222.1 2799477 2805221 R PFAM: FG-GAP; Haemolysin-type calcium-binding repeat; KEGG: syf:Synpcc7942_1337 integrins alpha chain; FG-GAP repeat-containing protein complement(2799477..2805221) Nitrosomonas sp. AL212 10299378 YP_004295787.1 CDS NAL212_2838 NC_015222.1 2805804 2806184 D KEGG: nmu:Nmul_A1625 hypothetical protein; hypothetical protein 2805804..2806184 Nitrosomonas sp. AL212 10299379 YP_004295788.1 CDS NAL212_2839 NC_015222.1 2806340 2810197 R KEGG: syc:syc0216_c hypothetical protein; PFAM: FG-GAP; Haemolysin-type calcium-binding repeat; SMART: Integrin alpha beta-propellor; FG-GAP repeat-containing protein complement(2806340..2810197) Nitrosomonas sp. AL212 10299380 YP_004295789.1 CDS NAL212_2840 NC_015222.1 2810293 2811330 R PFAM: FG-GAP; KEGG: npu:Npun_F4869 putative outer membrane adhesin like proteiin; FG-GAP repeat-containing protein complement(2810293..2811330) Nitrosomonas sp. AL212 10299381 YP_004295790.1 CDS NAL212_2841 NC_015222.1 2811407 2812300 D KEGG: ppr:PBPRB1378 hypothetical protein; hypothetical protein 2811407..2812300 Nitrosomonas sp. AL212 10299382 YP_004295791.1 CDS NAL212_2842 NC_015222.1 2812276 2815221 R KEGG: syf:Synpcc7942_1337 integrins alpha chain; PFAM: FG-GAP; Haemolysin-type calcium-binding repeat; SMART: Integrin alpha beta-propellor; FG-GAP repeat-containing protein complement(2812276..2815221) Nitrosomonas sp. AL212 10299383 YP_004295792.1 CDS NAL212_2843 NC_015222.1 2815805 2816185 D KEGG: nmu:Nmul_A1625 hypothetical protein; hypothetical protein 2815805..2816185 Nitrosomonas sp. AL212 10299384 YP_004295793.1 CDS NAL212_2844 NC_015222.1 2816292 2818247 R KEGG: npu:Npun_R5402 FG-GAP repeat-containing protein; PFAM: FG-GAP; SMART: Integrin alpha beta-propellor; FG-GAP repeat-containing protein complement(2816292..2818247) Nitrosomonas sp. AL212 10299385 YP_004295794.1 CDS NAL212_2845 NC_015222.1 2818395 2819993 R KEGG: syf:Synpcc7942_1337 integrins alpha chain; PFAM: FG-GAP; Haemolysin-type calcium-binding repeat; SMART: Integrin alpha beta-propellor; FG-GAP repeat-containing protein complement(2818395..2819993) Nitrosomonas sp. AL212 10299386 YP_004295795.1 CDS NAL212_2846 NC_015222.1 2819990 2820388 R KEGG: syf:Synpcc7942_1337 integrins alpha chain; PFAM: FG-GAP; SMART: Integrin alpha beta-propellor; FG-GAP repeat-containing protein complement(2819990..2820388) Nitrosomonas sp. AL212 10299387 YP_004295796.1 CDS NAL212_2847 NC_015222.1 2820535 2822487 R KEGG: syf:Synpcc7942_1337 integrins alpha chain; PFAM: Haemolysin-type calcium-binding repeat; FG-GAP; SMART: Integrin alpha beta-propellor; hemolysin-type calcium-binding protein complement(2820535..2822487) Nitrosomonas sp. AL212 10299388 YP_004295797.1 CDS NAL212_2848 NC_015222.1 2822636 2824612 R KEGG: syf:Synpcc7942_1337 integrins alpha chain; PFAM: FG-GAP; Haemolysin-type calcium-binding repeat; SMART: Integrin alpha beta-propellor; FG-GAP repeat-containing protein complement(2822636..2824612) Nitrosomonas sp. AL212 10299389 YP_004295798.1 CDS NAL212_2849 NC_015222.1 2824911 2828069 R KEGG: nmu:Nmul_A0691 hydrophobe/amphiphile efflux-1 HAE1; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein; hydrophobe/amphiphile efflux-1 (HAE1) family transporter complement(2824911..2828069) Nitrosomonas sp. AL212 10299390 YP_004295799.1 CDS NAL212_2850 NC_015222.1 2828085 2829272 R KEGG: nmu:Nmul_A0692 secretion protein HlyD; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit complement(2828085..2829272) Nitrosomonas sp. AL212 10299391 YP_004295800.1 CDS NAL212_2851 NC_015222.1 2829277 2829489 R KEGG: lac:LBA0839 competence protein; hypothetical protein complement(2829277..2829489) Nitrosomonas sp. AL212 10299392 YP_004295801.1 CDS NAL212_2852 NC_015222.1 2829572 2831281 D PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 1; KEGG: net:Neut_1872 multicopper oxidase, type 3; multicopper oxidase type 3 2829572..2831281 Nitrosomonas sp. AL212 10299393 YP_004295802.1 CDS NAL212_2853 NC_015222.1 2831281 2832294 D PFAM: Multicopper oxidase, type 2; KEGG: net:Neut_1873 hypothetical protein; multicopper oxidase type 2 2831281..2832294 Nitrosomonas sp. AL212 10299394 YP_004295803.1 CDS NAL212_2854 NC_015222.1 2832375 2832851 R KEGG: nde:NIDE3458 hypothetical protein; hypothetical protein complement(2832375..2832851) Nitrosomonas sp. AL212 10299395 YP_004295804.1 CDS NAL212_2855 NC_015222.1 2832929 2833258 R PFAM: Protein of unknown function DUF3467; KEGG: nde:NIDE3458 hypothetical protein; hypothetical protein complement(2832929..2833258) Nitrosomonas sp. AL212 10299396 YP_004295805.1 CDS NAL212_2856 NC_015222.1 2833713 2835020 D KEGG: cyj:Cyan7822_0595 Na-Ca exchanger/integrin-beta4; Na-Ca exchanger/integrin-beta4 2833713..2835020 Nitrosomonas sp. AL212 10299397 YP_004295806.1 CDS NAL212_2857 NC_015222.1 2835170 2836330 R KEGG: pna:Pnap_3396 DnaJ domain-containing protein; PFAM: Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal; heat shock protein DnaJ domain-containing protein complement(2835170..2836330) Nitrosomonas sp. AL212 10299398 YP_004295807.1 CDS NAL212_2858 NC_015222.1 2836512 2837690 D KEGG: gpb:HDN1F_35800 hypothetical protein; PFAM: YkuD domain; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; ErfK/YbiS/YcfS/YnhG family protein 2836512..2837690 Nitrosomonas sp. AL212 10299399 YP_004295808.1 CDS NAL212_2859 NC_015222.1 2837749 2838849 D KEGG: nmu:Nmul_A2166 peptidase T2, asparaginase 2; PFAM: Peptidase T2, asparaginase 2; beta-aspartyl-peptidase 2837749..2838849 Nitrosomonas sp. AL212 10299400 YP_004295809.1 CDS NAL212_2860 NC_015222.1 2838892 2839710 D KEGG: nde:NIDE0147 putative polyphosphate kinase 2; TIGRFAM: Polyphosphate:nucleotide phosphotransferase, PPK2; PFAM: Polyphosphate kinase-2-related; polyphosphate:nucleotide phosphotransferase 2838892..2839710 Nitrosomonas sp. AL212 10299401 YP_004295810.1 CDS NAL212_2861 NC_015222.1 2839765 2841258 D KEGG: mms:mma_1926 hypothetical protein; PFAM: CHAD; Adenylate cyclase; SMART: CHAD; CHAD domain-containing protein 2839765..2841258 Nitrosomonas sp. AL212 10299402 YP_004295811.1 CDS NAL212_2862 NC_015222.1 2841350 2842279 R PFAM: E3 Ubiquitin ligase; KEGG: neu:NE0281 hypothetical protein; E3 Ubiquitin ligase complement(2841350..2842279) Nitrosomonas sp. AL212 10299403 YP_004295812.1 CDS NAL212_2863 NC_015222.1 2842295 2842891 R PFAM: LemA; KEGG: neu:NE0282 hypothetical protein; LemA family protein complement(2842295..2842891) Nitrosomonas sp. AL212 10299404 YP_004295813.1 CDS NAL212_2864 NC_015222.1 2843221 2843592 D KEGG: scl:sce1971 putative lipoprotein; hypothetical protein 2843221..2843592 Nitrosomonas sp. AL212 10299405 YP_004295814.1 CDS NAL212_2865 NC_015222.1 2843874 2844185 D KEGG: hba:Hbal_2037 hypothetical protein; hypothetical protein 2843874..2844185 Nitrosomonas sp. AL212 10299406 YP_004295815.1 CDS NAL212_2866 NC_015222.1 2844312 2844668 R KEGG: net:Neut_2609 hypothetical protein; hypothetical protein complement(2844312..2844668) Nitrosomonas sp. AL212 10299407 YP_004295816.1 CDS NAL212_2867 NC_015222.1 2844797 2845486 R KEGG: net:Neut_2610 Crp/FNR family transcriptional regulator; PFAM: Cyclic nucleotide-binding domain; SMART: HTH transcriptional regulator, Crp; Cyclic nucleotide-binding domain; CarD family transcriptional regulator complement(2844797..2845486) Nitrosomonas sp. AL212 10299408 YP_004295817.1 CDS NAL212_2868 NC_015222.1 2845936 2848197 D TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; PAS fold; Diguanylate cyclase, predicted; KEGG: meh:M301_2309 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS; PAC motif; GAF; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 2845936..2848197 Nitrosomonas sp. AL212 10299409 YP_004295818.1 CDS NAL212_2870 NC_015222.1 2849804 2850034 D PFAM: SirA-like; KEGG: nmu:Nmul_A1011 SirA-like; SirA-like domain-containing protein 2849804..2850034 Nitrosomonas sp. AL212 10299411 YP_004295819.1 CDS NAL212_2871 NC_015222.1 2850256 2852001 D KEGG: psa:PST_0436 L-lactate permease, putative; TIGRFAM: L-lactate permease; PFAM: L-lactate permease; L-lactate transport 2850256..2852001 Nitrosomonas sp. AL212 10299412 YP_004295820.1 CDS NAL212_2872 NC_015222.1 2852268 2852372 D KEGG: kla:KLLA0F10912g hypothetical protein; hypothetical protein 2852268..2852372 Nitrosomonas sp. AL212 10299413 YP_004295821.1 CDS NAL212_2873 NC_015222.1 2852363 2853373 D PFAM: Protein of unknown function DUF457, transmembrane; KEGG: nhl:Nhal_0110 membrane-bound metal-dependent hydrolase; hypothetical protein 2852363..2853373 Nitrosomonas sp. AL212 10299414 YP_004295822.1 CDS NAL212_2874 NC_015222.1 2853403 2855676 D KEGG: neu:NE1299 guanylate cyclase; PFAM: CHASE2; Adenylyl cyclase class-3/4/guanylyl cyclase; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase; adenylate/guanylate cyclase with Chase sensor 2853403..2855676 Nitrosomonas sp. AL212 10299415 YP_004295823.1 CDS NAL212_2875 NC_015222.1 2855769 2859203 D PFAM: FecR protein; TonB-dependent receptor, beta-barrel; KEGG: neu:NE1298 TPR repeat-containing protein; FecR protein 2855769..2859203 Nitrosomonas sp. AL212 10299416 YP_004295824.1 CDS NAL212_2876 NC_015222.1 2859275 2859568 D KEGG: mdo:100025864 similar to gag protein; hypothetical protein 2859275..2859568 Nitrosomonas sp. AL212 10299417 YP_004295825.1 CDS NAL212_2877 NC_015222.1 2859850 2863146 D PFAM: TonB-dependent receptor, beta-barrel; FecR protein; Tetratricopeptide TPR2; KEGG: neu:NE1298 TPR repeat-containing protein; TonB-dependent receptor 2859850..2863146 Nitrosomonas sp. AL212 10299418 YP_004295826.1 CDS NAL212_2878 NC_015222.1 2863161 2863937 D KEGG: ptm:GSPATT00005658001 hypothetical protein; hypothetical protein 2863161..2863937 Nitrosomonas sp. AL212 10299419 YP_004295827.1 CDS NAL212_2879 NC_015222.1 2864011 2864754 R KEGG: cur:cur_1585 putative secretory lipase; hypothetical protein complement(2864011..2864754) Nitrosomonas sp. AL212 10299420 YP_004295828.1 CDS NAL212_2880 NC_015222.1 2864938 2866095 D KEGG: nmu:Nmul_A0675 aminotransferase, class V; PFAM: Aminotransferase, class V/Cysteine desulfurase; cysteine desulfurase 2864938..2866095 Nitrosomonas sp. AL212 10299421 YP_004295829.1 CDS NAL212_2881 NC_015222.1 2866187 2866936 D PFAM: Nucleotidyl transferase; KEGG: nmu:Nmul_A0425 nucleotidyl transferase; nucleotidyl transferase 2866187..2866936 Nitrosomonas sp. AL212 10299422 YP_004295830.1 CDS NAL212_2882 NC_015222.1 2866943 2867398 D KEGG: neu:NE0176 hypothetical protein; hypothetical protein 2866943..2867398 Nitrosomonas sp. AL212 10299423 YP_004295831.1 CDS NAL212_2883 NC_015222.1 2867423 2868508 D PFAM: Fatty acid desaturase, type 1; KEGG: nmu:Nmul_A0268 fatty acid desaturase; fatty acid desaturase 2867423..2868508 Nitrosomonas sp. AL212 10299424 YP_004295832.1 CDS NAL212_2884 NC_015222.1 2868508 2869248 D SMART: Histidine phosphatase superfamily, clade-1; TIGRFAM: Phosphoglycerate mutase 1; KEGG: nmu:Nmul_A0422 phosphoglycerate mutase 1 family protein; PFAM: Histidine phosphatase superfamily, clade-1; phosphoglycerate mutase family protein 2868508..2869248 Nitrosomonas sp. AL212 10299425 YP_004295833.1 CDS NAL212_2885 NC_015222.1 2869262 2869792 D manually curated; KEGG: tau:Tola_2812 T/U mismatch-specific DNA glycosylase; T/U mismatch-specific DNA glycosylase 2869262..2869792 Nitrosomonas sp. AL212 10299426 YP_004295834.1 CDS NAL212_2886 NC_015222.1 2870143 2871171 D PFAM: VanZ-like; KEGG: dat:HRM2_25480 hypothetical protein; VanZ family protein 2870143..2871171 Nitrosomonas sp. AL212 10299427 YP_004295835.1 CDS NAL212_2887 NC_015222.1 2871260 2872138 D PFAM: DNA methylase N-4/N-6; KEGG: sat:SYN_02042 DNA modification methylase; DNA methylase N-4/N-6 domain-containing protein 2871260..2872138 Nitrosomonas sp. AL212 10299428 YP_004295836.1 CDS NAL212_2889 NC_015222.1 2872363 2873262 R PFAM: Integrase, catalytic core; KEGG: pde:Pden_3846 integrase catalytic subunit; integrase catalytic region complement(2872363..2873262) Nitrosomonas sp. AL212 10299430 YP_004295837.1 CDS NAL212_2890 NC_015222.1 2873262 2873582 R PFAM: Transposase IS3/IS911family; KEGG: alv:Alvin_1732 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein complement(2873262..2873582) Nitrosomonas sp. AL212 10299431 YP_004295838.1 CDS NAL212_2891 NC_015222.1 2874159 2875616 R KEGG: mmb:Mmol_1152 hypothetical protein; hypothetical protein complement(2874159..2875616) Nitrosomonas sp. AL212 10299432 YP_004295839.1 CDS NAL212_2892 NC_015222.1 2875677 2876138 R PFAM: Protein of unknown function DUF454; KEGG: nmu:Nmul_A0750 hypothetical protein; hypothetical protein complement(2875677..2876138) Nitrosomonas sp. AL212 10299433 YP_004295840.1 CDS NAL212_2893 NC_015222.1 2876324 2876788 D KEGG: neu:NE0079 FKBP-type peptidyl-prolyl cis-trans isomerase (PPIase); PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; peptidyl-prolyl isomerase 2876324..2876788 Nitrosomonas sp. AL212 10299434 YP_004295841.1 CDS NAL212_2894 NC_015222.1 2877044 2880310 D PFAM: Protein of unknown function DUF748; KEGG: nmu:Nmul_A2679 hypothetical protein; hypothetical protein 2877044..2880310 Nitrosomonas sp. AL212 10299435 YP_004295842.1 CDS NAL212_2895 NC_015222.1 2880451 2880909 R KEGG: neu:NE1746 fimbrial protein pilin; fimbrial protein pilin complement(2880451..2880909) Nitrosomonas sp. AL212 10299436 YP_004295843.1 CDS NAL212_2896 NC_015222.1 2881078 2884608 R PFAM: PilC domain; KEGG: net:Neut_1833 putative type 4 fimbrial biogenesis protein PilY1; PilC domain-containing protein complement(2881078..2884608) Nitrosomonas sp. AL212 10299437 YP_004295844.1 CDS NAL212_2897 NC_015222.1 2884639 2885208 R KEGG: neu:NE1748 hypothetical protein; hypothetical protein complement(2884639..2885208) Nitrosomonas sp. AL212 10299438 YP_004295845.1 CDS NAL212_2898 NC_015222.1 2885205 2886002 R KEGG: reu:Reut_A0785 putative Tfp pilus assembly protein PilW; putative Tfp pilus assembly protein PilW complement(2885205..2886002) Nitrosomonas sp. AL212 10299439 YP_004295846.1 CDS NAL212_2899 NC_015222.1 2886002 2886517 R TIGRFAM: Pilus modification type IV, PilV; Prepilin-type cleavage/methylation, N-terminal; KEGG: noc:Noc_2271 type IV fimbrial biogenesis protein PilV; type IV pilus modification protein PilV complement(2886002..2886517) Nitrosomonas sp. AL212 10299440 YP_004295847.1 CDS NAL212_2900 NC_015222.1 2886508 2887086 R PFAM: General secretion pathway, GspH; Prepilin-type cleavage/methylation, N-terminal; KEGG: neu:NE1751 putative type-4 fimbrial pilin related signal peptide protein; General secretion pathway, GspH complement(2886508..2887086) Nitrosomonas sp. AL212 10299441 YP_004295848.1 CDS NAL212_2901 NC_015222.1 2887278 2888384 D TIGRFAM: Glycine oxidase ThiO; KEGG: neu:NE0650 NAD binding site:D-amino acid oxidase; PFAM: FAD dependent oxidoreductase; glycine oxidase ThiO 2887278..2888384 Nitrosomonas sp. AL212 10299442 YP_004295849.1 CDS NAL212_2902 NC_015222.1 2888394 2889338 R TIGRFAM: LytB protein; KEGG: net:Neut_1903 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; PFAM: LytB protein; hydroxymethylbutenyl pyrophosphate reductase complement(2888394..2889338) Nitrosomonas sp. AL212 10299443 YP_004295850.1 CDS NAL212_2903 NC_015222.1 2889441 2890559 R KEGG: nmu:Nmul_A0091 3-deoxy-7-phosphoheptulonate synthase; PFAM: DAHP synthetase I/KDSA; 3-deoxy-7-phosphoheptulonate synthase complement(2889441..2890559) Nitrosomonas sp. AL212 10299444 YP_004295851.1 CDS NAL212_2904 NC_015222.1 2890819 2892087 D KEGG: nmu:Nmul_A0008 periplasmic sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; integral membrane sensor signal transduction histidine kinase 2890819..2892087 Nitrosomonas sp. AL212 10299445 YP_004295852.1 CDS NAL212_2905 NC_015222.1 2892084 2892647 D KEGG: net:Neut_1251 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; Fis family two component transcriptional regulator 2892084..2892647 Nitrosomonas sp. AL212 10299446 YP_004295853.1 CDS NAL212_2906 NC_015222.1 2892661 2893761 R TIGRFAM: Riboflavin biosynthesis protein RibD; Riboflavin-specific deaminase, C-terminal; KEGG: nmu:Nmul_A0006 riboflavin biosynthesis protein RibD; PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; CMP/dCMP deaminase, zinc-binding; riboflavin biosynthesis protein RibD complement(2892661..2893761) Nitrosomonas sp. AL212 10299447 YP_004295854.1 CDS NAL212_2907 NC_015222.1 2893872 2894318 R KEGG: nmu:Nmul_A0005 transcriptional regulator NrdR; TIGRFAM: Ribonucleotide reductase regulator NrdR-like; PFAM: ATP-cone; ribonucleotide reductase regulator NrdR-like protein complement(2893872..2894318) Nitrosomonas sp. AL212 10299448 YP_004295855.1 CDS NAL212_2908 NC_015222.1 2894385 2895632 R KEGG: nmu:Nmul_A0004 serine hydroxymethyltransferase; PFAM: Serine hydroxymethyltransferase; glycine hydroxymethyltransferase complement(2894385..2895632) Nitrosomonas sp. AL212 10299449 YP_004295856.1 CDS NAL212_2909 NC_015222.1 2895836 2896537 R PFAM: Glutamine amidotransferase class-I, C-terminal; KEGG: nmu:Nmul_A1045 glutamine amidotransferase class-I; glutamine amidotransferase complement(2895836..2896537) Nitrosomonas sp. AL212 10299450 YP_004295857.1 CDS NAL212_2910 NC_015222.1 2896704 2898086 D PFAM: Protein of unknown function DUF2868; KEGG: net:Neut_1033 hypothetical protein; hypothetical protein 2896704..2898086 Nitrosomonas sp. AL212 10299451 YP_004295858.1 CDS NAL212_2911 NC_015222.1 2898090 2899496 D PFAM: Protein of unknown function DUF3482; GTP-binding protein, HSR1-related; KEGG: net:Neut_1034 GTP-binding protein, HSR1-related; hypothetical protein 2898090..2899496 Nitrosomonas sp. AL212 10299452 YP_004295859.1 CDS NAL212_2912 NC_015222.1 2899792 2899926 R hypothetical protein complement(2899792..2899926) Nitrosomonas sp. AL212 10299453 YP_004295860.1 CDS NAL212_2913 NC_015222.1 2900160 2900552 D KEGG: lcr:LCRIS_00177 S-layer protein; hypothetical protein 2900160..2900552 Nitrosomonas sp. AL212 10299454 YP_004295861.1 CDS NAL212_2914 NC_015222.1 2901240 2901923 D PFAM: Peptidase, membrane zinc metallopeptidase, putative; KEGG: aeh:Mlg_1818 peptidase, membrane zinc metallopeptidase, putative; peptidase membrane zinc metallopeptidase 2901240..2901923 Nitrosomonas sp. AL212 10299455 YP_004295862.1 CDS NAL212_2915 NC_015222.1 2902063 2902497 D KEGG: neu:NE1611 general secretion pathway protein G; TIGRFAM: General secretion pathway protein G; Prepilin-type cleavage/methylation, N-terminal; PFAM: Type II secretion system protein G; Prepilin-type cleavage/methylation, N-terminal; general secretion pathway protein G 2902063..2902497 Nitrosomonas sp. AL212 10299456 YP_004295863.1 CDS NAL212_2916 NC_015222.1 2902506 2903690 D PFAM: Type II secretion system F domain; KEGG: nmu:Nmul_A2589 type II secretion system protein; Type II secretion system F domain 2902506..2903690 Nitrosomonas sp. AL212 10299457 YP_004295864.1 CDS NAL212_2917 NC_015222.1 2903690 2905378 D PFAM: Type II secretion system protein E; General secretory system II, protein E, N-terminal; KEGG: net:Neut_0508 type II secretion system protein E; type II secretion system protein E 2903690..2905378 Nitrosomonas sp. AL212 10299458 YP_004295865.1 CDS NAL212_2918 NC_015222.1 2905359 2906192 D KEGG: nmu:Nmul_A2587 hypothetical protein; hypothetical protein 2905359..2906192 Nitrosomonas sp. AL212 10299459 YP_004295866.1 CDS NAL212_2919 NC_015222.1 2906180 2906728 D KEGG: net:Neut_0510 fimbrial assembly family protein; fimbrial assembly family protein 2906180..2906728 Nitrosomonas sp. AL212 10299460 YP_004295867.1 CDS NAL212_2920 NC_015222.1 2906764 2907315 D KEGG: nmu:Nmul_A2585 transmembrane protein; transmembrane protein 2906764..2907315 Nitrosomonas sp. AL212 10299461 YP_004295868.1 CDS NAL212_2921 NC_015222.1 2907320 2907886 D KEGG: net:Neut_0512 putative prolin-rich transmembrane protein; putative prolin-rich transmembrane protein 2907320..2907886 Nitrosomonas sp. AL212 10299462 YP_004295869.1 CDS NAL212_2922 NC_015222.1 2907886 2910156 D KEGG: net:Neut_0513 type II and III secretion system protein; PFAM: Type II/III secretion system; Secretin/TonB, short N-terminal; SMART: Secretin/TonB, short N-terminal; type II and III secretion system protein 2907886..2910156 Nitrosomonas sp. AL212 10299463 YP_004295870.1 CDS NAL212_2923 NC_015222.1 2910162 2910674 D KEGG: neu:NE1603 putative general secretion pathway GspG related transmembrane protein; putative general secretion pathway GspG related transmembrane protein 2910162..2910674 Nitrosomonas sp. AL212 10299464 YP_004295871.1 CDS NAL212_2924 NC_015222.1 2910668 2911066 D PFAM: Type II secretion system protein G; Prepilin-type cleavage/methylation, N-terminal; KEGG: nmu:Nmul_A2581 N-terminal methylation site; type II secretion system protein G 2910668..2911066 Nitrosomonas sp. AL212 10299465 YP_004295872.1 CDS NAL212_2925 NC_015222.1 2911103 2912011 D KEGG: net:Neut_0516 putative transmembrane protein; hypothetical protein 2911103..2912011 Nitrosomonas sp. AL212 10299466 YP_004295873.1 CDS NAL212_2926 NC_015222.1 2912105 2912497 R PFAM: Endoribonuclease L-PSP; KEGG: net:Neut_1514 endoribonuclease L-PSP; endoribonuclease L-PSP complement(2912105..2912497) Nitrosomonas sp. AL212 10299467 YP_004295874.1 CDS NAL212_2927 NC_015222.1 2912612 2914048 D KEGG: net:Neut_1887 exonuclease I; PFAM: Exonuclease C-terminal; Exonuclease, RNase T/DNA polymerase III; exodeoxyribonuclease I 2912612..2914048 Nitrosomonas sp. AL212 10299468 YP_004295875.1 CDS NAL212_2928 NC_015222.1 2914379 2915422 D TIGRFAM: Pilus retraction protein PilT; PFAM: Type II secretion system protein E; KEGG: neu:NE0965 twitching mobility protein; SMART: ATPase, AAA+ type, core; twitching motility protein 2914379..2915422 Nitrosomonas sp. AL212 10299469 YP_004295876.1 CDS NAL212_2929 NC_015222.1 2915463 2916599 D TIGRFAM: Pilus retraction protein PilT; PFAM: Type II secretion system protein E; KEGG: net:Neut_2337 twitching motility protein; SMART: ATPase, AAA+ type, core; twitching motility protein 2915463..2916599 Nitrosomonas sp. AL212 10299470 YP_004295877.1 CDS NAL212_2930 NC_015222.1 2916870 2917427 R KEGG: ddi:DDB_G0292664 hypothetical protein; hypothetical protein complement(2916870..2917427) Nitrosomonas sp. AL212 10299471 YP_004295878.1 CDS NAL212_2931 NC_015222.1 2917471 2917599 R hypothetical protein complement(2917471..2917599) Nitrosomonas sp. AL212 10299472 YP_004295879.1 CDS NAL212_2932 NC_015222.1 2917596 2920193 R TIGRFAM: Alanyl-tRNA synthetase, class IIc; PFAM: Alanyl-tRNA synthetase, class IIc, N-terminal; Phosphoesterase, DHHA1; Threonyl/alanyl tRNA synthetase, SAD; KEGG: nmu:Nmul_A0022 alanyl-tRNA synthetase; SMART: Threonyl/alanyl tRNA synthetase, SAD; alanyl-tRNA synthetase complement(2917596..2920193) Nitrosomonas sp. AL212 10299473 YP_004295880.1 CDS NAL212_2933 NC_015222.1 2920190 2920555 R KEGG: nmu:Nmul_A0021 hypothetical protein; hypothetical protein complement(2920190..2920555) Nitrosomonas sp. AL212 10299474 YP_004295881.1 CDS NAL212_2934 NC_015222.1 2920552 2921010 R KEGG: neu:NE1931 RecX regulatory protein; HAMAP: Regulatory protein RecX; PFAM: Regulatory protein RecX; Regulatory protein recX complement(2920552..2921010) Nitrosomonas sp. AL212 10299475 YP_004295882.1 CDS NAL212_2935 NC_015222.1 2921016 2922050 R TIGRFAM: DNA recombination and repair protein RecA; PFAM: DNA recombination and repair protein RecA; KEGG: neu:NE1932 recombinase A; SMART: ATPase, AAA+ type, core; recA protein complement(2921016..2922050) Nitrosomonas sp. AL212 10299476 YP_004295883.1 CDS NAL212_2936 NC_015222.1 2922284 2922925 D TIGRFAM: Adenylate kinase, subfamily; HAMAP: Adenylate kinase; KEGG: nmu:Nmul_A0741 adenylate kinase; PFAM: Adenylate kinase; Adenylate kinase, active site lid domain; adenylate kinase 2922284..2922925 Nitrosomonas sp. AL212 10299477 YP_004295884.1 CDS NAL212_2937 NC_015222.1 2923059 2924318 D PFAM: Phosphofructokinase domain; KEGG: neu:NE1934 6-phosphofructokinase; phosphofructokinase 2923059..2924318 Nitrosomonas sp. AL212 10299478 YP_004295885.1 CDS NAL212_2938 NC_015222.1 2924706 2926763 D TIGRFAM: Pyrophosphate-energised proton pump; KEGG: neu:NE1935 membrane-bound proton-translocating pyrophosphatase; PFAM: Pyrophosphate-energised proton pump; V-type H(+)-translocating pyrophosphatase 2924706..2926763 Nitrosomonas sp. AL212 10299479 YP_004295886.1 CDS NAL212_2939 NC_015222.1 2926942 2927769 R PFAM: Protein of unknown function DUF299, phosphotransferase, predicted; KEGG: neu:NE2365 hypothetical protein; hypothetical protein complement(2926942..2927769) Nitrosomonas sp. AL212 10299480 YP_004295887.1 CDS NAL212_2940 NC_015222.1 2927766 2930147 R TIGRFAM: Phosphoenolpyruvate synthase; KEGG: neu:NE2366 phosphoenolpyruvate synthase; PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme; PEP-utilising enzyme, mobile domain; phosphoenolpyruvate synthase complement(2927766..2930147) Nitrosomonas sp. AL212 10299481 YP_004295888.1 CDS NAL212_2941 NC_015222.1 2930197 2931183 R PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: slt:Slit_0984 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2930197..2931183) Nitrosomonas sp. AL212 10299482 YP_004295889.1 CDS NAL212_2942 NC_015222.1 2931352 2932827 D KEGG: nwa:Nwat_2772 ribulose-bisphosphate carboxylase; PFAM: Ribulose bisphosphate carboxylase, large subunit, C-terminal; Ribulose bisphosphate carboxylase, large subunit, N-terminal; ribulose-bisphosphate carboxylase 2931352..2932827 Nitrosomonas sp. AL212 10299483 YP_004295890.1 CDS NAL212_2943 NC_015222.1 2932848 2933282 D PFAM: Ribulose bisphosphate carboxylase, small chain; KEGG: nmu:Nmul_A0685 ribulose-bisphosphate carboxylase; SMART: Ribulose bisphosphate carboxylase, small chain; ribulose-bisphosphate carboxylase 2932848..2933282 Nitrosomonas sp. AL212 10299484 YP_004295891.1 CDS NAL212_2944 NC_015222.1 2933430 2934371 D TIGRFAM: CbxX/CfqX, monofunctional; PFAM: ATPase, AAA-type, core; KEGG: nmu:Nmul_A0684 AAA ATPase, central region; SMART: ATPase, AAA+ type, core; CbbX protein 2933430..2934371 Nitrosomonas sp. AL212 10299485 YP_004295892.1 CDS NAL212_2945 NC_015222.1 2934406 2934759 D KEGG: nhl:Nhal_3445 hypothetical protein; hypothetical protein 2934406..2934759 Nitrosomonas sp. AL212 10299486 YP_004295893.1 CDS NAL212_2946 NC_015222.1 2934793 2936025 D TIGRFAM: Ketose-bisphosphate aldolase, class-II; KEGG: slt:Slit_0992 ketose-bisphosphate aldolase; PFAM: Ketose-bisphosphate aldolase, class-II; ketose-bisphosphate aldolase 2934793..2936025 Nitrosomonas sp. AL212 10299487 YP_004295894.1 CDS NAL212_2947 NC_015222.1 2936249 2936932 D PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: net:Neut_2403 OmpA/MotB domain-containing protein; OmpA/MotB domain-containing protein 2936249..2936932 Nitrosomonas sp. AL212 10299488 YP_004295895.1 CDS NAL212_2948 NC_015222.1 2937022 2937249 R KEGG: nmg:Nmag_1146 alcohol dehydrogenase GroES domain protein; hypothetical protein complement(2937022..2937249) Nitrosomonas sp. AL212 10299489 YP_004295896.1 CDS NAL212_2949 NC_015222.1 2939010 2939315 R KEGG: vei:Veis_1232 CRISPR-associated Cas2 family protein; TIGRFAM: CRISPR associated protein Cas2; PFAM: Virulence-associated protein D / CRISPR associated protein Cas2; CRISPR-associated protein Cas2 complement(2939010..2939315) Nitrosomonas sp. AL212 10299490 YP_004295897.1 CDS NAL212_2951 NC_015222.1 2940133 2941440 D PFAM: Transposase, IS4-like; KEGG: dde:Dde_2849 ISPg7, transposase; transposase IS4 family protein 2940133..2941440 Nitrosomonas sp. AL212 10299492 YP_004295898.1 CDS NAL212_2952 NC_015222.1 2941806 2944940 R TIGRFAM: CRISPR-associated protein, SAG0894; KEGG: vei:Veis_1230 CRISPR-associated endonuclease Csn1 family protein; CRISPR-associated protein, Csn1 family complement(2941806..2944940) Nitrosomonas sp. AL212 10299493 YP_004295899.1 CDS NAL212_2953 NC_015222.1 2945202 2946608 R KEGG: bge:BC1002_4059 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain; succinate-semialdehyde dehydrogenase complement(2945202..2946608) Nitrosomonas sp. AL212 10299494 YP_004295900.1 CDS NAL212_2955 NC_015222.1 2946891 2947790 R PFAM: Integrase, catalytic core; KEGG: pde:Pden_3846 integrase catalytic subunit; integrase catalytic region complement(2946891..2947790) Nitrosomonas sp. AL212 10299496 YP_004295901.1 CDS NAL212_2956 NC_015222.1 2947850 2949004 R PFAM: Integrase, catalytic core; KEGG: bac:BamMC406_6587 integrase catalytic region; integrase catalytic region complement(2947850..2949004) Nitrosomonas sp. AL212 10299497 YP_004295902.1 CDS NAL212_2957 NC_015222.1 2949036 2949344 R PFAM: Transposase IS3/IS911family; KEGG: alv:Alvin_1732 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein complement(2949036..2949344) Nitrosomonas sp. AL212 10299498 YP_004295903.1 CDS NAL212_2958 NC_015222.1 2949983 2950285 D KEGG: ptm:GSPATT00021173001 hypothetical protein; hypothetical protein 2949983..2950285 Nitrosomonas sp. AL212 10299499 YP_004295904.1 CDS NAL212_2959 NC_015222.1 2950442 2951353 R KEGG: neu:NE2218 hypothetical protein; hypothetical protein complement(2950442..2951353) Nitrosomonas sp. AL212 10299500 YP_004295905.1 CDS NAL212_2960 NC_015222.1 2951716 2952618 R KEGG: syx:SynWH7803_0111 atypical alkaline phosphatase with phytase-like insertion; hypothetical protein complement(2951716..2952618) Nitrosomonas sp. AL212 10299501 YP_004295906.1 CDS NAL212_2961 NC_015222.1 2952747 2954567 R KEGG: nmu:Nmul_A1899 multicopper oxidase type 1; multicopper oxidase type 1 complement(2952747..2954567) Nitrosomonas sp. AL212 10299502 YP_004295907.1 CDS NAL212_2962 NC_015222.1 2954668 2954976 R KEGG: cai:Caci_8228 hypothetical protein; hypothetical protein complement(2954668..2954976) Nitrosomonas sp. AL212 10299503 YP_004295908.1 CDS NAL212_2963 NC_015222.1 2955172 2956023 D KEGG: rfr:Rfer_1747 hypothetical protein; hypothetical protein 2955172..2956023 Nitrosomonas sp. AL212 10299504 YP_004295909.1 CDS NAL212_2964 NC_015222.1 2956075 2957823 D KEGG: ppf:Pput_1226 hypothetical protein; hypothetical protein 2956075..2957823 Nitrosomonas sp. AL212 10299505 YP_004295910.1 CDS NAL212_2965 NC_015222.1 2957973 2959199 D KEGG: eba:ebA177 hypothetical protein; hypothetical protein 2957973..2959199 Nitrosomonas sp. AL212 10299506 YP_004295911.1 CDS NAL212_2966 NC_015222.1 2959254 2960219 R TIGRFAM: Putative agmatinase; KEGG: net:Neut_1437 agmatinase; PFAM: Ureohydrolase; agmatinase complement(2959254..2960219) Nitrosomonas sp. AL212 10299507 YP_004295912.1 CDS NAL212_2967 NC_015222.1 2960445 2960948 D KEGG: mca:MCA2972 lipoprotein A domain-containing protein; TIGRFAM: Rare lipoprotein A, bacterial; PFAM: Barwin-related endoglucanase; rare lipoprotein A 2960445..2960948 Nitrosomonas sp. AL212 10299508 YP_004295913.1 CDS NAL212_2968 NC_015222.1 2961112 2961831 D KEGG: neu:NE1296 cAMP-dependent protein kinase; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain; CarD family transcriptional regulator 2961112..2961831 Nitrosomonas sp. AL212 10299509 YP_004295914.1 CDS NAL212_2969 NC_015222.1 2961941 2963188 D KEGG: nmu:Nmul_A2509 LolC/E family lipoprotein releasing system, transmembrane protein; TIGRFAM: Lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: Domain of unknown function DUF214, ABC transporter permease; lipoprotein releasing system transmembrane protein LolC/E family 2961941..2963188 Nitrosomonas sp. AL212 10299510 YP_004295915.1 CDS NAL212_2970 NC_015222.1 2963181 2963870 D SMART: ATPase, AAA+ type, core; TIGRFAM: Lipoprotein releasing system, ATP-binding protein; KEGG: nmu:Nmul_A2508 lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter-like; lipoprotein releasing system, ATP-binding protein 2963181..2963870 Nitrosomonas sp. AL212 10299511 YP_004295916.1 CDS NAL212_2971 NC_015222.1 2963921 2965630 D PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: neu:NE1613 ABC transporter permease/ATP-binding protein; SMART: ATPase, AAA+ type, core; xenobiotic-transporting ATPase 2963921..2965630 Nitrosomonas sp. AL212 10299512 YP_004295917.1 CDS NAL212_2972 NC_015222.1 2965659 2966009 R PFAM: Uncharacterised conserved protein UCP025560; KEGG: cte:CT1722 hypothetical protein; hypothetical protein complement(2965659..2966009) Nitrosomonas sp. AL212 10299513 YP_004295918.1 CDS NAL212_2973 NC_015222.1 2966034 2966249 R KEGG: cte:CT1723 hypothetical protein; hypothetical protein complement(2966034..2966249) Nitrosomonas sp. AL212 10299514 YP_004295919.1 CDS NAL212_2974 NC_015222.1 2966317 2968782 R PFAM: Dicarboxylate transport; KEGG: azl:AZL_014360 hypothetical protein; dienelactone hydrolase domain-containing protein complement(2966317..2968782) Nitrosomonas sp. AL212 10299515 YP_004295920.1 CDS NAL212_2975 NC_015222.1 2969053 2969706 D PFAM: Guanylate kinase; KEGG: wsu:WS0188 guanylate kinase; guanylate kinase 2969053..2969706 Nitrosomonas sp. AL212 10299516 YP_004295921.1 CDS NAL212_2976 NC_015222.1 2970022 2970180 D KEGG: nmu:Nmul_A0026 major facilitator transporter; hypothetical protein 2970022..2970180 Nitrosomonas sp. AL212 10299517 YP_004295922.1 CDS NAL212_2977 NC_015222.1 2970400 2970939 D PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; KEGG: gca:Galf_2042 peroxiredoxin; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen 2970400..2970939 Nitrosomonas sp. AL212 10299518 YP_004295923.1 CDS NAL212_2978 NC_015222.1 2971041 2971412 D KEGG: nmu:Nmul_A0025 TraR/DksA family transcriptional regulator; TraR/DksA family transcriptional regulator 2971041..2971412 Nitrosomonas sp. AL212 10299519 YP_004295924.1 CDS NAL212_2979 NC_015222.1 2971433 2971960 R KEGG: nmu:Nmul_A0024 Smr protein/MutS2-like; PFAM: Smr protein/MutS2 C-terminal; SMART: Smr protein/MutS2 C-terminal; Smr protein/MutS2 complement(2971433..2971960) Nitrosomonas sp. AL212 10299520 YP_004295925.1 CDS NAL212_2980 NC_015222.1 2972027 2973010 R TIGRFAM: Thioredoxin reductase; KEGG: nmu:Nmul_A0023 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; thioredoxin reductase complement(2972027..2973010) Nitrosomonas sp. AL212 10299521 YP_004295926.1 CDS NAL212_2981 NC_015222.1 2972982 2973641 R KEGG: cyc:PCC7424_2988 intradiol ring-cleavage dioxygenase; PFAM: Intradiol ring-cleavage dioxygenase, C-terminal; protocatechuate 3,4-dioxygenase complement(2972982..2973641) Nitrosomonas sp. AL212 10299522 YP_004295927.1 CDS NAL212_2982 NC_015222.1 2973974 2974615 R KEGG: app:CAP2UW1_2168 protein of unknown function DUF1555; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial; PEP motif putative anchor domain-containing protein complement(2973974..2974615) Nitrosomonas sp. AL212 10299523 YP_004295928.1 CDS NAL212_2983 NC_015222.1 2974891 2974995 D hypothetical protein 2974891..2974995 Nitrosomonas sp. AL212 10299524 YP_004295929.1 CDS NAL212_2984 NC_015222.1 2975410 2975577 R KEGG: tye:THEYE_A0608 tetratricopeptide repeat domain protein; hypothetical protein complement(2975410..2975577) Nitrosomonas sp. AL212 10299525 YP_004295930.1 CDS NAL212_2985 NC_015222.1 2975833 2977095 R KEGG: nmu:Nmul_A0389 two component, sigma54 specific, fis family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; two component, sigma54 specific, transcriptional regulator, Fis family complement(2975833..2977095) Nitrosomonas sp. AL212 10299526 YP_004295931.1 CDS NAL212_2986 NC_015222.1 2977248 2979425 R KEGG: net:Neut_0388 periplasmic sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS; multi-sensor signal transduction histidine kinase complement(2977248..2979425) Nitrosomonas sp. AL212 10299527 YP_004295932.1 CDS NAL212_2987 NC_015222.1 2979425 2980075 R KEGG: nmu:Nmul_A0391 proline rich signal peptide protein; hypothetical protein complement(2979425..2980075) Nitrosomonas sp. AL212 10299528 YP_004295933.1 CDS NAL212_2988 NC_015222.1 2980038 2981315 R KEGG: nmu:Nmul_A0392 sun protein; TIGRFAM: Fmu, rRNA SAM-dependent methyltransferase; PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; NusB/RsmB/TIM44; sun protein complement(2980038..2981315) Nitrosomonas sp. AL212 10299529 YP_004295934.1 CDS NAL212_2989 NC_015222.1 2981320 2982261 R TIGRFAM: Methionyl-tRNA formyltransferase; KEGG: nmu:Nmul_A0393 methionyl-tRNA formyltransferase; PFAM: Formyl transferase, N-terminal; Formyl transferase, C-terminal; methionyl-tRNA formyltransferase complement(2981320..2982261) Nitrosomonas sp. AL212 10299530 YP_004295935.1 CDS NAL212_2990 NC_015222.1 2982375 2982878 R KEGG: nmu:Nmul_A0394 peptide deformylase; TIGRFAM: Formylmethionine deformylase; PFAM: Formylmethionine deformylase; peptide deformylase complement(2982375..2982878) Nitrosomonas sp. AL212 10299531 YP_004295936.1 CDS NAL212_2991 NC_015222.1 2982975 2984009 D KEGG: neu:NE1969 LysM motif-containing protein; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; peptidoglycan-binding lysin domain 2982975..2984009 Nitrosomonas sp. AL212 10299532 YP_004295937.1 CDS NAL212_2992 NC_015222.1 2984029 2985126 D KEGG: nmu:Nmul_A0395 DNA processing protein DprA, putative; TIGRFAM: DNA recombination-mediator protein A; PFAM: DNA recombination-mediator protein A; DNA protecting protein DprA 2984029..2985126 Nitrosomonas sp. AL212 10299533 YP_004295938.1 CDS NAL212_2993 NC_015222.1 2985194 2985652 D PFAM: Protein of unknown function DUF494; KEGG: net:Neut_0395 hypothetical protein; hypothetical protein 2985194..2985652 Nitrosomonas sp. AL212 10299534 YP_004295939.1 CDS NAL212_2994 NC_015222.1 2985797 2988313 D SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain; TIGRFAM: DNA topoisomerase III, bacterial-type; KEGG: nmu:Nmul_A0396 DNA topoisomerase III; PFAM: DNA topoisomerase, type IA, central; Toprim domain; DNA topoisomerase III 2985797..2988313 Nitrosomonas sp. AL212 10299535 YP_004295940.1 CDS NAL212_2995 NC_015222.1 2988573 2988818 R KEGG: nmu:Nmul_A0399 hypothetical protein; hypothetical protein complement(2988573..2988818) Nitrosomonas sp. AL212 10299536 YP_004295941.1 CDS NAL212_2996 NC_015222.1 2989125 2990447 D TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; KEGG: net:Neut_0398 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: Enolpyruvate transferase domain; 3-phosphoshikimate 1-carboxyvinyltransferase 2989125..2990447 Nitrosomonas sp. AL212 10299537 YP_004295942.1 CDS NAL212_2997 NC_015222.1 2990486 2991166 D KEGG: nmu:Nmul_A2070 cytidylate kinase; TIGRFAM: Cytidylate kinase; PFAM: Cytidylate kinase domain; cytidylate kinase 2990486..2991166 Nitrosomonas sp. AL212 10299538 YP_004295943.1 CDS NAL212_2998 NC_015222.1 2991298 2993010 D TIGRFAM: Ribosomal S1 synthesis/modification protein; PFAM: Ribosomal protein S1, RNA-binding domain; KEGG: nmu:Nmul_A2069 30S ribosomal protein S1; SMART: RNA-binding domain, S1; 30S ribosomal protein S1 2991298..2993010 Nitrosomonas sp. AL212 10299539 YP_004295944.1 CDS NAL212_2999 NC_015222.1 2993020 2993310 D TIGRFAM: Integration host factor, beta subunit; PFAM: Histone-like bacterial DNA-binding protein; KEGG: nmu:Nmul_A2068 integration host factor, beta subunit; SMART: Histone-like bacterial DNA-binding protein; integration host factor subunit beta 2993020..2993310 Nitrosomonas sp. AL212 10299540 YP_004295945.1 CDS NAL212_3000 NC_015222.1 2993494 2993703 D PFAM: Protein of unknown function DUF1049; KEGG: rme:Rmet_0724 hypothetical protein; hypothetical protein 2993494..2993703 Nitrosomonas sp. AL212 10299541 YP_004295946.1 CDS NAL212_3001 NC_015222.1 2993719 2994411 D SMART: Orotidine 5'-phosphate decarboxylase domain; TIGRFAM: Orotidine 5'-phosphate decarboxylase; KEGG: nmu:Nmul_A2066 orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase domain; orotidine 5'-phosphate decarboxylase 2993719..2994411 Nitrosomonas sp. AL212 10299542 YP_004295947.1 CDS NAL212_3002 NC_015222.1 2994678 2997197 R KEGG: rru:Rru_B0037 hemolysin-type calcium-binding region; hypothetical protein complement(2994678..2997197) Nitrosomonas sp. AL212 10299543 YP_004295948.1 CDS NAL212_3003 NC_015222.1 2997716 2997937 D manually curated; KEGG: avn:Avin_15960 ABC-2 transporter, permease component; hypothetical protein 2997716..2997937 Nitrosomonas sp. AL212 10299544 YP_004295949.1 CDS NAL212_3004 NC_015222.1 2997927 2999201 D PFAM: ABC transporter-like; KEGG: mca:MCA2549 efflux ABC transporter, ATP-binding protein, putative; SMART: ATPase, AAA+ type, core; teichoic-acid-transporting AtPase 2997927..2999201 Nitrosomonas sp. AL212 10299545 YP_004295950.1 CDS NAL212_3005 NC_015222.1 2999194 3000960 D KEGG: mca:MCA2548 hypothetical protein; hypothetical protein 2999194..3000960 Nitrosomonas sp. AL212 10299546 YP_004295951.1 CDS NAL212_3006 NC_015222.1 3001072 3002253 D PFAM: Glycosyl transferase, group 1; KEGG: tit:Thit_0644 glycosyl transferase group 1; group 1 glycosyl transferase 3001072..3002253 Nitrosomonas sp. AL212 10299547 YP_004295952.1 CDS NAL212_3007 NC_015222.1 3002219 3002998 D PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; KEGG: swo:Swol_2445 hypothetical protein; LmbE family protein 3002219..3002998 Nitrosomonas sp. AL212 10299548 YP_004295953.1 CDS NAL212_3008 NC_015222.1 3003172 3005166 D PFAM: Haloacid dehalogenase-like hydrolase; KEGG: gpb:HDN1F_01080 hypothetical protein; haloacid dehalogenase domain-containing protein hydrolase 3003172..3005166 Nitrosomonas sp. AL212 10299549 YP_004295954.1 CDS NAL212_3010 NC_015222.1 3005649 3007265 R KEGG: amr:AM1_6172 IS5 family transposase; IS5 family transposase complement(3005649..3007265) Nitrosomonas sp. AL212 10299551 YP_004295955.1 CDS NAL212_3011 NC_015222.1 3010433 3011326 R PFAM: Ribosome biogenesis GTPase RsgA, putative; manually curated; TIGRFAM: Ribosome biogenesis GTPase RsgA, putative; KEGG: nmu:Nmul_A0711 GTPase EngC; HAMAP: Ribosome biogenesis GTPase RsgA, putative; ribosome biogenesis GTPase RsgA complement(3010433..3011326) Nitrosomonas sp. AL212 10299552 YP_004295956.1 CDS NAL212_3012 NC_015222.1 3011323 3011664 R PFAM: Transcriptional coactivator/pterin dehydratase; KEGG: nmu:Nmul_A0712 pterin-4-alpha-carbinolamine dehydratase; transcriptional coactivator/pterin dehydratase complement(3011323..3011664) Nitrosomonas sp. AL212 10299553 YP_004295957.1 CDS NAL212_3013 NC_015222.1 3011661 3012917 R KEGG: neu:NE0076 M48 family peptidase; PFAM: Peptidase M48; Ste24 endopeptidase complement(3011661..3012917) Nitrosomonas sp. AL212 10299554 YP_004295958.1 CDS NAL212_3014 NC_015222.1 3013010 3013555 D KEGG: neu:NE0075 oligoribonuclease; PFAM: Exonuclease, RNase T/DNA polymerase III; SMART: Exonuclease; exonuclease RNase T and DNA polymerase III 3013010..3013555 Nitrosomonas sp. AL212 10299555 YP_004295959.1 CDS NAL212_3015 NC_015222.1 3013672 3014085 D KEGG: nmu:Nmul_A1009 calcium-binding EF-hand; calcium-binding EF-hand 3013672..3014085 Nitrosomonas sp. AL212 10299556 YP_004295960.1 CDS NAL212_3016 NC_015222.1 3014274 3015677 R KEGG: nmu:Nmul_A2737 peptidase M16-like; PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; processing peptidase complement(3014274..3015677) Nitrosomonas sp. AL212 10299557 YP_004295961.1 CDS NAL212_3017 NC_015222.1 3015754 3016779 D TIGRFAM: Cell division transporter substrate-binding protein FtsY; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; KEGG: net:Neut_1529 signal recognition particle-docking protein FtsY; SMART: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; ATPase, AAA+ type, core; signal recognition particle-docking protein FtsY 3015754..3016779 Nitrosomonas sp. AL212 10299558 YP_004295962.1 CDS NAL212_3018 NC_015222.1 3016807 3017460 D SMART: ATPase, AAA+ type, core; TIGRFAM: Cell division ATP-binding protein FtsE; KEGG: neu:NE1414 ABC transporter ATPase; PFAM: ABC transporter-like; cell division ATP-binding protein FtsE 3016807..3017460 Nitrosomonas sp. AL212 10299559 YP_004295963.1 CDS NAL212_3019 NC_015222.1 3017457 3018368 D PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: net:Neut_1527 hypothetical protein; hypothetical protein 3017457..3018368 Nitrosomonas sp. AL212 10299560 YP_004295964.1 CDS NAL212_3020 NC_015222.1 3018485 3019330 D KEGG: nmu:Nmul_A2741 RNA polymerase factor sigma-32; TIGRFAM: RNA polymerase sigma factor RpoH, proteobacteria; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-32 subunit RpoH 3018485..3019330 Nitrosomonas sp. AL212 10299561 YP_004295965.1 CDS NAL212_3023 NC_015222.1 3021400 3022554 R PFAM: Integrase, catalytic core; KEGG: bac:BamMC406_6587 integrase catalytic region; integrase catalytic region complement(3021400..3022554) Nitrosomonas sp. AL212 10299565 YP_004295966.1 CDS NAL212_3024 NC_015222.1 3022586 3022885 R PFAM: Transposase IS3/IS911family; KEGG: rms:RMA_0745 transposase; transposase IS3/IS911 family protein complement(3022586..3022885) Nitrosomonas sp. AL212 10299566 YP_004295967.1 CDS NAL212_3025 NC_015222.1 3022993 3023208 D KEGG: tet:TTHERM_00266730 Viral A-type inclusion protein repeat containing protein; Viral A-type inclusion protein repeat containing protein 3022993..3023208 Nitrosomonas sp. AL212 10299567 YP_004295968.1 CDS NAL212_3026 NC_015222.1 3023225 3023455 D KEGG: tko:TK2070 cytosolic NiFe-hydrogenase, delta subunit; hypothetical protein 3023225..3023455 Nitrosomonas sp. AL212 10299568 YP_004295969.1 CDS NAL212_3027 NC_015222.1 3023452 3023850 D PFAM: Mor transcription activator; KEGG: dac:Daci_1325 hypothetical protein; Mor transcription activator domain-containing protein 3023452..3023850 Nitrosomonas sp. AL212 10299569 YP_004295970.1 CDS NAL212_3028 NC_015222.1 3023896 3024084 R hypothetical protein complement(3023896..3024084) Nitrosomonas sp. AL212 10299570 YP_004295971.1 CDS NAL212_3029 NC_015222.1 3024772 3025032 D KEGG: gvi:gsr0356 hypothetical protein; TIGRFAM: Putative addiction module antidote protein, CC2985; PFAM: Uncharacterised protein family UPF0156/MetJ /Arc repressor; addiction module antidote protein 3024772..3025032 Nitrosomonas sp. AL212 10299571 YP_004295972.1 CDS NAL212_3030 NC_015222.1 3025032 3025352 D PFAM: Plasmid stabilisation system; KEGG: gvi:glr0357 hypothetical protein; plasmid stabilization system 3025032..3025352 Nitrosomonas sp. AL212 10299572 YP_004295973.1 CDS NAL212_3032 NC_015222.1 3026449 3026601 R hypothetical protein complement(3026449..3026601) Nitrosomonas sp. AL212 10299574 YP_004295974.1 CDS NAL212_3034 NC_015222.1 3027190 3029070 R PFAM: IstB-like ATP-binding protein; Integrase, catalytic core; KEGG: mms:mma_2809 transposase IstA; IstB domain-containing protein ATP-binding protein complement(3027190..3029070) Nitrosomonas sp. AL212 10299576 YP_004295975.1 CDS NAL212_3035 NC_015222.1 3029189 3029503 R PFAM: Plasmid stabilisation system; KEGG: rec:RHECIAT_PC0000823 probable plasmid stabilization protein; plasmid stabilization system complement(3029189..3029503) Nitrosomonas sp. AL212 10299577 YP_004295976.1 CDS NAL212_3036 NC_015222.1 3029503 3029754 R PFAM: Antitoxin ParD; KEGG: rec:RHECIAT_PC0000824 probable plasmid stabilization protein; antitoxin ParD protein complement(3029503..3029754) Nitrosomonas sp. AL212 10299578 YP_004295977.1 CDS NAL212_3037 NC_015222.1 3030318 3031202 D KEGG: pyo:PY05266 hypothetical protein; hypothetical protein 3030318..3031202 Nitrosomonas sp. AL212 10299579 YP_004295978.1 CDS NAL212_3039 NC_015222.1 3033114 3034268 D PFAM: Integrase, catalytic core; KEGG: bac:BamMC406_6587 integrase catalytic region; integrase catalytic region 3033114..3034268 Nitrosomonas sp. AL212 10299581 YP_004295979.1 CDS NAL212_3041 NC_015222.1 3034575 3034883 R KEGG: dde:Dde_3407 ISGsu6, transposase OrfA; ISGsu6, transposase OrfA complement(3034575..3034883) Nitrosomonas sp. AL212 10299583 YP_004295980.1 CDS NAL212_3046 NC_015222.1 3037578 3037826 D PFAM: CopG-like DNA-binding; KEGG: nhl:Nhal_0318 CopG domain protein DNA-binding domain protein; CopG-like DNA-binding domain-containing protein 3037578..3037826 Nitrosomonas sp. AL212 10299588 YP_004295981.1 CDS NAL212_3047 NC_015222.1 3037823 3038119 D KEGG: nhl:Nhal_0317 addiction module toxin, RelE/StbE family; TIGRFAM: Addiction module toxin, RelE/StbE; PFAM: Plasmid stabilisation system; RelE/StbE family addiction module toxin 3037823..3038119 Nitrosomonas sp. AL212 10299589 YP_004295982.1 CDS NAL212_3049 NC_015222.1 3038704 3040080 R KEGG: tmz:Tmz1t_3172 IstB domain protein ATP-binding protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; IstB domain-containing protein ATP-binding protein complement(3038704..3040080) Nitrosomonas sp. AL212 10299591 YP_004295983.1 CDS NAL212_3050 NC_015222.1 3040136 3040771 D PFAM: Transposase (putative), IS66 Orf2-like; KEGG: eba:ebB55 transposase, fragment; IS66 Orf2 family protein 3040136..3040771 Nitrosomonas sp. AL212 10299592 YP_004295984.1 CDS NAL212_3051 NC_015222.1 3040825 3042408 D PFAM: Transposase, IS66; KEGG: gca:Galf_2413 transposase; transposase IS66 3040825..3042408 Nitrosomonas sp. AL212 10299593 YP_004295985.1 CDS NAL212_3052 NC_015222.1 3042421 3043788 D KEGG: tmz:Tmz1t_3172 IstB domain protein ATP-binding protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; IstB domain-containing protein ATP-binding protein 3042421..3043788 Nitrosomonas sp. AL212 10299594 YP_004295986.1 CDS NAL212_3054 NC_015222.1 3044373 3044669 R KEGG: nhl:Nhal_0317 addiction module toxin, RelE/StbE family; TIGRFAM: Addiction module toxin, RelE/StbE; PFAM: Plasmid stabilisation system; RelE/StbE family addiction module toxin complement(3044373..3044669) Nitrosomonas sp. AL212 10299596 YP_004295987.1 CDS NAL212_3055 NC_015222.1 3044666 3044914 R PFAM: CopG-like DNA-binding; KEGG: nhl:Nhal_0318 CopG domain protein DNA-binding domain protein; CopG-like DNA-binding domain-containing protein complement(3044666..3044914) Nitrosomonas sp. AL212 10299597 YP_004295988.1 CDS NAL212_3058 NC_015222.1 3046557 3046985 D KEGG: lpc:LPC_2791 conjugal transfer protein TraM; hypothetical protein 3046557..3046985 Nitrosomonas sp. AL212 10299600 YP_004295989.1 CDS NAL212_3060 NC_015222.1 3047223 3048260 D PFAM: Integrase, catalytic core, phage; KEGG: afr:AFE_0995 site-specific recombinase, phage integrase family; integrase family protein 3047223..3048260 Nitrosomonas sp. AL212 10299602 YP_004295990.1 CDS NAL212_3061 NC_015222.1 3048483 3049787 D PFAM: Integrase, catalytic core, phage; KEGG: tin:Tint_1145 integrase family protein; integrase family protein 3048483..3049787 Nitrosomonas sp. AL212 10299603 YP_004295991.1 CDS NAL212_3062 NC_015222.1 3049873 3050184 D KEGG: afm:AFUA_8G02350 PKS-like enzyme; hypothetical protein 3049873..3050184 Nitrosomonas sp. AL212 10299604 YP_004295992.1 CDS NAL212_3063 NC_015222.1 3050280 3051047 D KEGG: eba:ebA798 hypothetical protein; hypothetical protein 3050280..3051047 Nitrosomonas sp. AL212 10299605 YP_004295993.1 CDS NAL212_3064 NC_015222.1 3051144 3051383 D KEGG: vap:Vapar_3801 hypothetical protein; hypothetical protein 3051144..3051383 Nitrosomonas sp. AL212 10299606 YP_004295994.1 CDS NAL212_3065 NC_015222.1 3051386 3051958 D KEGG: ahe:Arch_1299 LPXTG-motif cell wall anchor domain protein; hypothetical protein 3051386..3051958 Nitrosomonas sp. AL212 10299607 YP_004295995.1 CDS NAL212_3066 NC_015222.1 3052010 3052390 D KEGG: ols:Olsu_0575 potassium transporter; hypothetical protein 3052010..3052390 Nitrosomonas sp. AL212 10299608 YP_004295996.1 CDS NAL212_3067 NC_015222.1 3052380 3053864 D PFAM: Protein of unknown function DUF3631; KEGG: rso:RSc2483 hypothetical protein; hypothetical protein 3052380..3053864 Nitrosomonas sp. AL212 10299609 YP_004295997.1 CDS NAL212_3068 NC_015222.1 3053866 3054144 D KEGG: cbr:CBG11014 C. briggsae CBR-SUR-5 protein; hypothetical protein 3053866..3054144 Nitrosomonas sp. AL212 10299610 YP_004295998.1 CDS NAL212_3069 NC_015222.1 3054161 3054526 D KEGG: rxy:Rxyl_1916 hypothetical protein; hypothetical protein 3054161..3054526 Nitrosomonas sp. AL212 10299611 YP_004295999.1 CDS NAL212_3070 NC_015222.1 3054653 3054877 D KEGG: bpb:bpr_I1143 hypothetical protein; hypothetical protein 3054653..3054877 Nitrosomonas sp. AL212 10299612 YP_004296000.1 CDS NAL212_3071 NC_015222.1 3055042 3055572 D KEGG: tnp:Tnap_0277 PhoH family protein; hypothetical protein 3055042..3055572 Nitrosomonas sp. AL212 10299613 YP_004296001.1 CDS NAL212_3072 NC_015222.1 3055686 3055874 D hypothetical protein 3055686..3055874 Nitrosomonas sp. AL212 10299614 YP_004296002.1 CDS NAL212_3073 NC_015222.1 3056242 3056499 D KEGG: vdi:Vdis_0664 hypothetical protein; hypothetical protein 3056242..3056499 Nitrosomonas sp. AL212 10299615 YP_004296003.1 CDS NAL212_3074 NC_015222.1 3056504 3057001 D PFAM: Peptidase A2A, retrovirus RVP subgroup; KEGG: tan:TA11510 DNA-damage inducible protein ddi1-like; peptidase A2A 3056504..3057001 Nitrosomonas sp. AL212 10299616 YP_004296004.1 CDS NAL212_3075 NC_015222.1 3057229 3059451 R KEGG: nmu:Nmul_A2057 RNA polymerase sigma factor RpoD; TIGRFAM: RNA polymerase sigma factor RpoD, C-terminal; RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, non-essential domain; RNA polymerase sigma factor 70, region 1.1; RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-70 subunit RpoD complement(3057229..3059451) Nitrosomonas sp. AL212 10299618 YP_004296005.1 CDS NAL212_3076 NC_015222.1 3059540 3061339 R KEGG: nmu:Nmul_A2058 DNA primase; TIGRFAM: DNA primase, DnaG; PFAM: DNA primase, catalytic core, N-terminal; Zinc finger, CHC2-type; Toprim domain; DNA primase, DnaB-helicase binding domain; DNA primase DnaG, DnaB-binding; DNA primase complement(3059540..3061339) Nitrosomonas sp. AL212 10299619 YP_004296006.1 CDS NAL212_3077 NC_015222.1 3061427 3061879 R KEGG: neu:NE0227 hypothetical protein; hypothetical protein complement(3061427..3061879) Nitrosomonas sp. AL212 10299620 YP_004296007.1 CDS NAL212_3078 NC_015222.1 3061982 3062194 R KEGG: nmu:Nmul_A2060 30S ribosomal protein S21; TIGRFAM: Ribosomal protein S21; PFAM: Ribosomal protein S21; 30S ribosomal protein S21 complement(3061982..3062194) Nitrosomonas sp. AL212 10299621 YP_004296008.1 CDS NAL212_3079 NC_015222.1 3062587 3063099 R KEGG: nmu:Nmul_A2414 hypothetical protein; HAMAP: Ribosome-associated, YjgA; PFAM: Ribosome-associated, YjgA; hypothetical protein complement(3062587..3063099) Nitrosomonas sp. AL212 10299622 YP_004296009.1 CDS NAL212_3080 NC_015222.1 3063191 3064549 D PFAM: Peptidase U62, modulator of DNA gyrase; KEGG: nmu:Nmul_A2415 peptidase U62, modulator of DNA gyrase; peptidase U62 modulator of DNA gyrase 3063191..3064549 Nitrosomonas sp. AL212 10299623 YP_004296010.1 CDS NAL212_3081 NC_015222.1 3064848 3065057 R hypothetical protein complement(3064848..3065057) Nitrosomonas sp. AL212 10299624 YP_004296011.1 CDS NAL212_3082 NC_015222.1 3065425 3066027 R KEGG: mei:Msip34_2442 protein of unknown function DUF1555; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial; PEP motif putative anchor domain-containing protein complement(3065425..3066027) Nitrosomonas sp. AL212 10299625 YP_004296012.1 CDS NAL212_3088 NC_015222.1 3069204 3069512 R KEGG: neu:NE0570 lipase; lipase complement(3069204..3069512) Nitrosomonas sp. AL212 10299631 YP_004296013.1 CDS NAL212_3089 NC_015222.1 3069645 3069953 R PFAM: Protein of unknown function DUF1840; KEGG: net:Neut_0486 hypothetical protein; hypothetical protein complement(3069645..3069953) Nitrosomonas sp. AL212 10299632 YP_004296014.1 CDS NAL212_3090 NC_015222.1 3070011 3070241 R KEGG: bth:BT_3853 hypothetical protein; hypothetical protein complement(3070011..3070241) Nitrosomonas sp. AL212 10299633 YP_004296015.1 CDS NAL212_3091 NC_015222.1 3071100 3071636 D PFAM: PEP-CTERM bacterial; KEGG: meh:M301_2481 protein of unknown function DUF1555; hypothetical protein 3071100..3071636 Nitrosomonas sp. AL212 10299634 YP_004296016.1 CDS NAL212_3092 NC_015222.1 3071920 3072849 R PFAM: Histone deacetylase superfamily; KEGG: slt:Slit_1540 histone deacetylase; histone deacetylase superfamily protein complement(3071920..3072849) Nitrosomonas sp. AL212 10299635 YP_004296017.1 CDS NAL212_3093 NC_015222.1 3073023 3074069 D KEGG: brm:Bmur_0150 apolipoprotein A1/A4/E; hypothetical protein 3073023..3074069 Nitrosomonas sp. AL212 10299636 YP_004296018.1 CDS NAL212_3094 NC_015222.1 3074066 3074293 R hypothetical protein complement(3074066..3074293) Nitrosomonas sp. AL212 10299637 YP_004296019.1 CDS NAL212_3095 NC_015222.1 3074310 3074777 R KEGG: swd:Swoo_3607 bacterioferritin; TIGRFAM: Bacterioferritin; PFAM: Ferritin/Dps protein; bacterioferritin complement(3074310..3074777) Nitrosomonas sp. AL212 10299638 YP_004296020.1 CDS NAL212_3096 NC_015222.1 3075030 3076172 R PFAM: Filamentation induced by cAMP/death on curing-related; KEGG: cts:Ctha_0805 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic complement(3075030..3076172) Nitrosomonas sp. AL212 10299639 YP_004296021.1 CDS NAL212_3097 NC_015222.1 3076307 3077515 R KEGG: pag:PLES_44951 hypothetical protein; hypothetical protein complement(3076307..3077515) Nitrosomonas sp. AL212 10299640 YP_004296022.1 CDS NAL212_3098 NC_015222.1 3077606 3078094 R KEGG: drt:Dret_2530 hypothetical protein; hypothetical protein complement(3077606..3078094) Nitrosomonas sp. AL212 10299641 YP_004296023.1 CDS NAL212_3099 NC_015222.1 3078194 3078895 R PFAM: Protein of unknown function DUF45; KEGG: nmu:Nmul_A0547 hypothetical protein; hypothetical protein complement(3078194..3078895) Nitrosomonas sp. AL212 10299642 YP_004296024.1 CDS NAL212_3100 NC_015222.1 3078898 3079629 R KEGG: net:Neut_1866 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase complement(3078898..3079629) Nitrosomonas sp. AL212 10299643 YP_004296025.1 CDS NAL212_3101 NC_015222.1 3079626 3080165 R KEGG: neu:NE1185 D,D-heptose 1,7-bisphosphate phosphatase; TIGRFAM: Histidinol-phosphate phosphatase; HAD-superfamily hydrolase, subfamily IIIA; PFAM: Haloacid dehalogenase-like hydrolase; histidinol-phosphate phosphatase family protein complement(3079626..3080165) Nitrosomonas sp. AL212 10299644 YP_004296026.1 CDS NAL212_3102 NC_015222.1 3080167 3082362 R TIGRFAM: Glycyl-tRNA synthetase, class IIc, beta subunit; KEGG: mei:Msip34_2127 glycyl-tRNA synthetase, beta subunit; glycyl-tRNA synthetase subunit beta complement(3080167..3082362) Nitrosomonas sp. AL212 10299645 YP_004296027.1 CDS NAL212_3103 NC_015222.1 3082359 3083282 R TIGRFAM: Glycyl-tRNA synthetase, class IIc, alpha subunit; KEGG: neu:NE1187 glycyl-tRNA synthetase subunit alpha; PFAM: Glycyl-tRNA synthetase, class IIc, alpha subunit; glycyl-tRNA synthetase subunit alpha complement(3082359..3083282) Nitrosomonas sp. AL212 10299646 YP_004296028.1 CDS NAL212_3104 NC_015222.1 3083327 3084838 R TIGRFAM: Apolipoprotein N-acyltransferase; HAMAP: Apolipoprotein N-acyltransferase; KEGG: nmu:Nmul_A0552 apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; apolipoprotein N-acyltransferase complement(3083327..3084838) Nitrosomonas sp. AL212 10299647 YP_004296029.1 CDS NAL212_3105 NC_015222.1 3085224 3086960 D KEGG: nmu:Nmul_A0586 hypothetical protein; hypothetical protein 3085224..3086960 Nitrosomonas sp. AL212 10299648 YP_004296030.1 CDS NAL212_3106 NC_015222.1 3087069 3087836 D KEGG: neu:NE1831 putative cell division inhibitor MinC; TIGRFAM: Septum formation inhibitor MinC; PFAM: Septum formation inhibitor MinC, C-terminal; Septum formation inhibitor MinC, N-terminal; septum site-determining protein MinC 3087069..3087836 Nitrosomonas sp. AL212 10299649 YP_004296031.1 CDS NAL212_3107 NC_015222.1 3087861 3088673 D KEGG: net:Neut_1136 septum site-determining protein MinD; TIGRFAM: Septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; septum site-determining protein MinD 3087861..3088673 Nitrosomonas sp. AL212 10299650 YP_004296032.1 CDS NAL212_3108 NC_015222.1 3088670 3088948 D KEGG: neu:NE1829 cell division topological specificity factor MinE; TIGRFAM: Septum formation topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE; cell division topological specificity factor MinE 3088670..3088948 Nitrosomonas sp. AL212 10299651 YP_004296033.1 CDS NAL212_3109 NC_015222.1 3088973 3089680 D TIGRFAM: Outer membrane lipoprotein LolB; HAMAP: Outer membrane lipoprotein LolB; KEGG: nmu:Nmul_A0587 outer membrane lipoprotein LolB; PFAM: Outer membrane lipoprotein LolB; outer-membrane lipoprotein lolB 3088973..3089680 Nitrosomonas sp. AL212 10299652 YP_004296034.1 CDS NAL212_3110 NC_015222.1 3089717 3090556 D TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; KEGG: nmu:Nmul_A0588 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase, C-terminal; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 3089717..3090556 Nitrosomonas sp. AL212 10299653 YP_004296035.1 CDS NAL212_3111 NC_015222.1 3090777 3091727 D TIGRFAM: Phosphoribosyl pyrophosphokinase; KEGG: neu:NE1826 ribose-phosphate pyrophosphokinase; PFAM: Phosphoribosyltransferase; ribose-phosphate pyrophosphokinase 3090777..3091727 Nitrosomonas sp. AL212 10299655 YP_004296036.1 CDS NAL212_3112 NC_015222.1 3091787 3092407 D KEGG: nmu:Nmul_A0590 50S ribosomal protein L25/general stress protein Ctc; TIGRFAM: Ribosomal protein L25, long-form; PFAM: Ribosomal protein L25, short-form; ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 3091787..3092407 Nitrosomonas sp. AL212 10299656 YP_004296037.1 CDS NAL212_3113 NC_015222.1 3092549 3093118 D TIGRFAM: Peptidyl-tRNA hydrolase; KEGG: nmu:Nmul_A0591 peptidyl-tRNA hydrolase; PFAM: Peptidyl-tRNA hydrolase; peptidyl-tRNA hydrolase 3092549..3093118 Nitrosomonas sp. AL212 10299657 YP_004296038.1 CDS NAL212_3114 NC_015222.1 3093175 3094266 D KEGG: nmu:Nmul_A0592 GTP-dependent nucleic acid-binding protein EngD; TIGRFAM: Conserved hypothetical protein CHP00092; PFAM: Domain of unknown function DUF933; GTP-binding protein, HSR1-related; GTP-binding protein YchF 3093175..3094266 Nitrosomonas sp. AL212 10299658 YP_004296039.1 CDS NAL212_3115 NC_015222.1 3094399 3095505 D PFAM: Filamentation induced by cAMP/death on curing-related; KEGG: shn:Shewana3_2962 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic 3094399..3095505 Nitrosomonas sp. AL212 10299659 YP_004296040.1 CDS NAL212_3116 NC_015222.1 3095701 3097800 R PFAM: Domain of unknown function DUF262; KEGG: afe:Lferr_0290 hypothetical protein; hypothetical protein complement(3095701..3097800) Nitrosomonas sp. AL212 10299660 YP_004296041.1 CDS NAL212_3117 NC_015222.1 3097886 3100786 R KEGG: slo:Shew_0457 ATP-dependent helicase HepA; PFAM: RNA polymerase recycling, bacterial, C-terminal; Helicase, C-terminal; SNF2-related; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; RNA polymerase recycling-like protein complement(3097886..3100786) Nitrosomonas sp. AL212 10299661 YP_004296042.1 CDS NAL212_3118 NC_015222.1 3101021 3101776 R PFAM: Protein of unknown function DUF2490; KEGG: neu:NE0571 hypothetical protein; hypothetical protein complement(3101021..3101776) Nitrosomonas sp. AL212 10299662 YP_004296043.1 CDS NAL212_3119 NC_015222.1 3101806 3102699 R KEGG: ppr:PBPRB1378 hypothetical protein; hypothetical protein complement(3101806..3102699) Nitrosomonas sp. AL212 10299663 YP_004296044.1 CDS NAL212_3120 NC_015222.1 3103107 3103244 D hypothetical protein 3103107..3103244 Nitrosomonas sp. AL212 10299664 YP_004296045.1 CDS NAL212_3121 NC_015222.1 3103379 3103690 D KEGG: nmu:Nmul_A0962 cytochrome c, class I; cytochrome c, class I 3103379..3103690 Nitrosomonas sp. AL212 10299665 YP_004296046.1 CDS NAL212_3122 NC_015222.1 3103771 3105216 R PFAM: HemN, C-terminal; KEGG: slt:Slit_0423 oxygen-independent coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB; coproporphyrinogen dehydrogenase complement(3103771..3105216) Nitrosomonas sp. AL212 10299666 YP_004296047.1 CDS NAL212_3123 NC_015222.1 3105390 3106142 D KEGG: net:Neut_2036 transcriptional regulator, Crp/Fnr family protein; PFAM: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp; SMART: HTH transcriptional regulator, Crp; Cyclic nucleotide-binding domain; CarD family transcriptional regulator 3105390..3106142 Nitrosomonas sp. AL212 10299667 YP_004296048.1 CDS NAL212_3124 NC_015222.1 3106407 3107126 D KEGG: nmu:Nmul_A0657 30S ribosomal protein S2; TIGRFAM: Ribosomal protein S2, bacteria/mitochondria/plastid; PFAM: Ribosomal protein S2; 30S ribosomal protein S2 3106407..3107126 Nitrosomonas sp. AL212 10299668 YP_004296049.1 CDS NAL212_3125 NC_015222.1 3107169 3108053 D KEGG: neu:NE1717 elongation factor Ts; TIGRFAM: Translation elongation factor EFTs/EF1B; PFAM: Translation elongation factor EFTs/EF1B, dimerisation; Ubiquitin-associated/translation elongation factor EF1B, N-terminal; translation elongation factor Ts 3107169..3108053 Nitrosomonas sp. AL212 10299669 YP_004296050.1 CDS NAL212_3126 NC_015222.1 3108087 3108803 D KEGG: nmu:Nmul_A0659 uridylate kinase; TIGRFAM: Uridylate kinase, bacteria; PFAM: Aspartate/glutamate/uridylate kinase; uridylate kinase 3108087..3108803 Nitrosomonas sp. AL212 10299670 YP_004296051.1 CDS NAL212_3127 NC_015222.1 3108855 3109412 D KEGG: neu:NE1715 ribosome recycling factor; TIGRFAM: Ribosome recycling factor; PFAM: Ribosome recycling factor; ribosome recycling factor 3108855..3109412 Nitrosomonas sp. AL212 10299671 YP_004296052.1 CDS NAL212_3128 NC_015222.1 3109414 3110172 D TIGRFAM: Di-trans-poly-cis-decaprenylcistransferase-like; KEGG: nmu:Nmul_A0661 undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase-like; UDP diphosphate synthase 3109414..3110172 Nitrosomonas sp. AL212 10299672 YP_004296053.1 CDS NAL212_3129 NC_015222.1 3110184 3111008 D PFAM: Phosphatidate cytidylyltransferase; KEGG: nmu:Nmul_A0662 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 3110184..3111008 Nitrosomonas sp. AL212 10299673 YP_004296054.1 CDS NAL212_3130 NC_015222.1 3111005 3112192 D TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; KEGG: net:Neut_2029 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal; 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 3111005..3112192 Nitrosomonas sp. AL212 10299674 YP_004296055.1 CDS NAL212_3131 NC_015222.1 3112348 3113715 D KEGG: nmu:Nmul_A0664 peptidase M50, putative membrane-associated zinc metallopeptidase; TIGRFAM: Peptidase M50, putative membrane-associated zinc metallopeptidase; PFAM: Peptidase M50; PDZ/DHR/GLGF; membrane-associated zinc metalloprotease 3112348..3113715 Nitrosomonas sp. AL212 10299675 YP_004296056.1 CDS NAL212_3132 NC_015222.1 3113719 3116031 D KEGG: net:Neut_2027 surface antigen (D15); TIGRFAM: Outer membrane assembly protein, YaeT; PFAM: Bacterial surface antigen (D15); Surface antigen variable number; outer membrane protein assembly complex, YaeT protein 3113719..3116031 Nitrosomonas sp. AL212 10299676 YP_004296057.1 CDS NAL212_3133 NC_015222.1 3116061 3116588 D KEGG: net:Neut_2026 outer membrane chaperone Skp (OmpH); PFAM: Outer membrane chaperone Skp (OmpH); SMART: Outer membrane chaperone Skp (OmpH); outer membrane chaperone Skp 3116061..3116588 Nitrosomonas sp. AL212 10299677 YP_004296058.1 CDS NAL212_3134 NC_015222.1 3116662 3117108 D KEGG: net:Neut_2025 (3R)-hydroxymyristoyl-ACP dehydratase; TIGRFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; 3-hydroxyacyl-ACP dehydratase 3116662..3117108 Nitrosomonas sp. AL212 10299678 YP_004296059.1 CDS NAL212_3135 NC_015222.1 3117173 3117745 D KEGG: nmu:Nmul_A0668 ribonuclease H; PFAM: Ribonuclease HII/HIII; ribonuclease H 3117173..3117745 Nitrosomonas sp. AL212 10299679 YP_004296060.1 CDS NAL212_3136 NC_015222.1 3117892 3118371 D PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; KEGG: net:Neut_2023 FKBP-type peptidyl-prolyl cis-trans isomerase (PPIase); FKBP-type peptidylprolyl isomerase 3117892..3118371 Nitrosomonas sp. AL212 10299680 YP_004296061.1 CDS NAL212_3137 NC_015222.1 3118396 3120993 R TIGRFAM: DNA mismatch repair protein MutS, type 1; PFAM: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS-like, N-terminal; DNA mismatch repair protein MutS, connector; DNA mismatch repair protein MutS, core; DNA mismatch repair protein MutS, clamp; KEGG: nmu:Nmul_A0670 DNA mismatch repair protein MutS; SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; DNA mismatch repair protein MutS complement(3118396..3120993) Nitrosomonas sp. AL212 10299681 YP_004296062.1 CDS NAL212_3139 NC_015222.1 3121478 3122041 R PFAM: Cell wall hydrolase, SleB; KEGG: dba:Dbac_1158 cell wall hydrolase SleB; cell wall hydrolase SleB complement(3121478..3122041) Nitrosomonas sp. AL212 10299683 YP_004296063.1 CDS NAL212_3140 NC_015222.1 3122147 3122371 D KEGG: ang:An11g07930 hypothetical protein; hypothetical protein 3122147..3122371 Nitrosomonas sp. AL212 10299684 YP_004296064.1 CDS NAL212_3141 NC_015222.1 3122471 3122734 D KEGG: neu:NE1119 hypothetical protein; hypothetical protein 3122471..3122734 Nitrosomonas sp. AL212 10299685 YP_004296065.1 CDS NAL212_3142 NC_015222.1 3122841 3123098 R KEGG: mno:Mnod_1082 hypothetical protein; hypothetical protein complement(3122841..3123098) Nitrosomonas sp. AL212 10299686 YP_004296066.1 CDS NAL212_3143 NC_015222.1 3124035 3124373 R KEGG: nmu:Nmul_A1518 hypothetical protein; hypothetical protein complement(3124035..3124373) Nitrosomonas sp. AL212 10299687 YP_004296067.1 CDS NAL212_3144 NC_015222.1 3124628 3125059 D KEGG: afw:Anae109_2950 signal transduction protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core; putative signal transduction protein with CBS domains 3124628..3125059 Nitrosomonas sp. AL212 10299688 YP_004296068.1 CDS NAL212_3145 NC_015222.1 3125133 3126749 R KEGG: amr:AM1_6172 IS5 family transposase; IS5 family transposase complement(3125133..3126749) Nitrosomonas sp. AL212 10299689 YP_004296069.1 CDS NAL212_3146 NC_015222.1 3126954 3127289 D KEGG: ddi:DDB_G0295771 hypothetical protein; hypothetical protein 3126954..3127289 Nitrosomonas sp. AL212 10299690 YP_004296070.1 CDS NAL212_3147 NC_015222.1 3127730 3128152 D PFAM: Ferric-uptake regulator; KEGG: nmu:Nmul_A2512 ferric uptake regulator family protein; ferric uptake regulator, Fur family 3127730..3128152 Nitrosomonas sp. AL212 10299692 YP_004296071.1 CDS NAL212_3148 NC_015222.1 3128152 3128484 D KEGG: nmu:Nmul_A2511 hypothetical protein; hypothetical protein 3128152..3128484 Nitrosomonas sp. AL212 10299693 YP_004296072.1 CDS NAL212_3149 NC_015222.1 3128536 3128682 D hypothetical protein 3128536..3128682 Nitrosomonas sp. AL212 10299694 YP_004296073.1 CDS NAL212_3150 NC_015222.1 3128672 3130684 D PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: nmu:Nmul_A2510 TonB-dependent receptor; TonB-dependent receptor 3128672..3130684 Nitrosomonas sp. AL212 10299695 YP_004296074.1 CDS NAL212_3151 NC_015222.1 3130830 3131351 R KEGG: nhl:Nhal_2121 hypothetical protein; hypothetical protein complement(3130830..3131351) Nitrosomonas sp. AL212 10299696 YP_004296075.1 CDS NAL212_3152 NC_015222.1 3131450 3131815 R KEGG: net:Neut_1871 hypothetical protein; hypothetical protein complement(3131450..3131815) Nitrosomonas sp. AL212 10299697 YP_004296076.1 CDS NAL212_3153 NC_015222.1 3131939 3132775 D PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: neu:NE1215 short-chain dehydrogenase/reductase; short-chain dehydrogenase/reductase SDR 3131939..3132775 Nitrosomonas sp. AL212 10299698 YP_004296077.1 CDS NAL212_3154 NC_015222.1 3132799 3133290 R KEGG: nmu:Nmul_A0103 hypothetical protein; hypothetical protein complement(3132799..3133290) Nitrosomonas sp. AL212 10299699 YP_004296078.1 CDS NAL212_3155 NC_015222.1 3133360 3133548 R PFAM: Protein of unknown function DUF3460; KEGG: net:Neut_1676 hypothetical protein; hypothetical protein complement(3133360..3133548) Nitrosomonas sp. AL212 10299700 YP_004296079.1 CDS NAL212_3156 NC_015222.1 3133607 3134581 R PFAM: ADP-ribosylation/Crystallin J1; KEGG: nmu:Nmul_A1026 hypothetical protein; ADP-ribosylation/Crystallin J1 complement(3133607..3134581) Nitrosomonas sp. AL212 10299701 YP_004296080.1 CDS NAL212_3157 NC_015222.1 3134596 3134778 R PFAM: Uncharacterised protein family UPF0434/Trm112; KEGG: net:Neut_2110 tetraacyldisaccharide 4'-kinase; hypothetical protein complement(3134596..3134778) Nitrosomonas sp. AL212 10299702 YP_004296081.1 CDS NAL212_3158 NC_015222.1 3134800 3135639 R TIGRFAM: ParB-like partition protein; PFAM: ParB-like nuclease; KEGG: nmu:Nmul_A2767 ParB-like partition proteins; SMART: ParB-like nuclease; parB-like partition protein complement(3134800..3135639) Nitrosomonas sp. AL212 10299703 YP_004296082.1 CDS NAL212_3159 NC_015222.1 3135735 3136499 R PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: net:Neut_2435 cobyrinic acid a,c-diamide synthase; Cobyrinic acid ac-diamide synthase complement(3135735..3136499) Nitrosomonas sp. AL212 10299704 YP_004296083.1 CDS NAL212_3160 NC_015222.1 3136496 3137170 R KEGG: neu:NE2475 16S rRNA methyltransferase GidB; TIGRFAM: rRNA small subunit methyltransferase G; PFAM: rRNA small subunit methyltransferase G; methyltransferase GidB complement(3136496..3137170) Nitrosomonas sp. AL212 10299705 YP_004296084.1 CDS NAL212_3161 NC_015222.1 3137167 3139050 R KEGG: nmu:Nmul_A2770 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; TIGRFAM: Glucose-inhibited division protein A; PFAM: Glucose-inhibited division protein A-related; glucose inhibited division protein A complement(3137167..3139050) Nitrosomonas sp. AL212 10299706 YP_004296085.1 CDS NAL212_3163 NC_015222.1 3140430 3141452 D PFAM: Integrase, catalytic core; Resolvase, helix-turn-helix domain; KEGG: pst:PSPTO_B0040 ISPsy4, transposase; integrase catalytic region 3140430..3141452 Nitrosomonas sp. AL212 10299708 YP_004296086.1 CDS NAL212_3164 NC_015222.1 3141449 3142231 D KEGG: pst:PSPTO_B0039 transposase/IS protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; IstB domain-containing protein ATP-binding protein 3141449..3142231 Nitrosomonas sp. AL212 10299709 YP_004296087.1 CDS NAL212_3166 NC_015222.1 3143349 3143498 R KEGG: gca:Galf_2611 DNA-damage-inducible protein D; hypothetical protein complement(3143349..3143498) Nitrosomonas sp. AL212 10299711 YP_004296088.1 CDS NAL212_3167 NC_015222.1 3143498 3144493 R PFAM: Protein of unknown function DUF1016; KEGG: gpb:HDN1F_15170 protein of unknown function DUF1016; hypothetical protein complement(3143498..3144493) Nitrosomonas sp. AL212 10299712 YP_004296089.1 CDS NAL212_3168 NC_015222.1 3144490 3145752 R PFAM: Restriction endonuclease, type I, S subunit, EcoBI; KEGG: paa:Paes_2397 restriction modification system DNA specificity domain; restriction modification system DNA specificity domain complement(3144490..3145752) Nitrosomonas sp. AL212 10299713 YP_004296090.1 CDS NAL212_3169 NC_015222.1 3145755 3146360 R PFAM: Filamentation induced by cAMP/death on curing-related; KEGG: fph:Fphi_0614 mobilization/cell filamentation protein-like protein; filamentation induced by cAMP protein fic complement(3145755..3146360) Nitrosomonas sp. AL212 10299714 YP_004296091.1 CDS NAL212_3170 NC_015222.1 3146394 3150014 R TIGRFAM: Restriction endonuclease, type I, EcoRI, R subunit; PFAM: Type I restriction and modification enzyme, subunit R, C-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; Transposase IS200-like; Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; KEGG: pph:Ppha_0743 type I site-specific deoxyribonuclease, HsdR family; SMART: DEAD-like helicase, N-terminal; HsdR family type I site-specific deoxyribonuclease complement(3146394..3150014) Nitrosomonas sp. AL212 10299715 YP_004296092.1 CDS NAL212_3171 NC_015222.1 3150281 3151693 D KEGG: nmu:Nmul_A0690 RND efflux system, outer membrane lipoprotein, NodT; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein 3150281..3151693 Nitrosomonas sp. AL212 10299716 YP_004296093.1 CDS NAL212_3172 NC_015222.1 3151736 3152293 D PFAM: NADPH-dependent FMN reductase; KEGG: rfr:Rfer_2368 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 3151736..3152293 Nitrosomonas sp. AL212 10299717 YP_004296094.1 CDS NAL212_3173 NC_015222.1 3152336 3153577 D KEGG: nmu:Nmul_A0689 secretion protein HlyD; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit 3152336..3153577 Nitrosomonas sp. AL212 10299718 YP_004296095.1 CDS NAL212_3174 NC_015222.1 3153574 3156774 D KEGG: nmu:Nmul_A0688 hydrophobe/amphiphile efflux-1 HAE1; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 3153574..3156774 Nitrosomonas sp. AL212 10299719 YP_004296096.1 CDS NAL212_3175 NC_015222.1 3156771 3157241 D PFAM: Protein of unknown function DUF192; KEGG: rfr:Rfer_2763 hypothetical protein; hypothetical protein 3156771..3157241 Nitrosomonas sp. AL212 10299720 YP_004296097.1 CDS NAL212_3176 NC_015222.1 3157282 3158619 R KEGG: slt:Slit_2350 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; DEAD/DEAH box helicase domain-containing protein complement(3157282..3158619) Nitrosomonas sp. AL212 10299721 YP_004296098.1 CDS NAL212_3177 NC_015222.1 3158831 3159976 D PFAM: Methyltransferase small; KEGG: gca:Galf_2548 methyltransferase small; methyltransferase small 3158831..3159976 Nitrosomonas sp. AL212 10299722 YP_004296099.1 CDS NAL212_3178 NC_015222.1 3159989 3160318 R KEGG: phe:Phep_0928 MazG nucleotide pyrophosphohydrolase; MazG nucleotide pyrophosphohydrolase complement(3159989..3160318) Nitrosomonas sp. AL212 10299723 YP_004296100.1 CDS NAL212_3179 NC_015222.1 3160370 3161941 R KEGG: bid:Bind_2756 galactose oxidase; PFAM: Domain of unknown function DUF1929; Glyoxal oxidase, N-terminal; galactose oxidase complement(3160370..3161941) Nitrosomonas sp. AL212 10299724 YP_004296101.1 CDS NAL212_3181 NC_015222.1 3162627 3162821 R KEGG: ptm:GSPATT00027329001 hypothetical protein; hypothetical protein complement(3162627..3162821) Nitrosomonas sp. AL212 10299726 YP_004296102.1 CDS NAL212_3182 NC_015222.1 3162775 3164373 R PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: bpd:BURPS668_0139 cytidine/deoxycytidylate deaminase family protein; CMP/dCMP deaminase zinc-binding protein complement(3162775..3164373) Nitrosomonas sp. AL212 10299727 YP_004296103.1 CDS NAL212_3183 NC_015222.1 3164382 3166046 R TIGRFAM: ABC transporter ATP-binding protein, ChvD; PFAM: ABC transporter-like; KEGG: gca:Galf_2613 ABC transporter related; SMART: ATPase, AAA+ type, core; ChvD family ATP-binding protein complement(3164382..3166046) Nitrosomonas sp. AL212 10299728 YP_004296104.1 CDS NAL212_3184 NC_015222.1 3166156 3166383 R PFAM: Protein of unknown function DUF2835; KEGG: ote:Oter_1131 hypothetical protein; hypothetical protein complement(3166156..3166383) Nitrosomonas sp. AL212 10299729 YP_004296105.1 CDS NAL212_3185 NC_015222.1 3166415 3167155 R TIGRFAM: Pseudouridine synthase, RsuA/RluB/E/F; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: bav:BAV1651 ribosomal large subunit pseudouridine synthase F (pseudouridylate synthase); SMART: RNA-binding S4; pseudouridine synthase Rsu complement(3166415..3167155) Nitrosomonas sp. AL212 10299730 YP_004296106.1 CDS NAL212_3186 NC_015222.1 3167263 3167715 D KEGG: nmu:Nmul_A2287 rhodanese-like protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; rhodanese-like protein 3167263..3167715 Nitrosomonas sp. AL212 10299731 YP_004296107.1 CDS NAL212_3187 NC_015222.1 3167770 3168594 R KEGG: nmu:Nmul_A2286 undecaprenyl pyrophosphate phosphatase; TIGRFAM: Bacitracin resistance protein BacA; PFAM: Bacitracin resistance protein BacA; undecaprenol kinase complement(3167770..3168594) Nitrosomonas sp. AL212 10299732 YP_004296108.1 CDS NAL212_3188 NC_015222.1 3168640 3170535 R KEGG: nmu:Nmul_A2285 thiamine biosynthesis protein ThiC; TIGRFAM: Thiamine biosynthesis protein ThiC; PFAM: Thiamine biosynthesis protein ThiC; thiamine biosynthesis protein ThiC complement(3168640..3170535) Nitrosomonas sp. AL212 10299733 YP_004296109.1 CDS NAL212_3189 NC_015222.1 3170743 3171396 D KEGG: net:Neut_0197 protein-L-isoaspartate(D-aspartate) O-methyltransferase; PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate(D-aspartate) O-methyltransferase 3170743..3171396 Nitrosomonas sp. AL212 10299734 YP_004296110.1 CDS NAL212_3190 NC_015222.1 3171485 3172840 D KEGG: neu:NE0036 outer membrane efflux protein; TIGRFAM: Type I secretion outer membrane protein, TolC; PFAM: Outer membrane efflux protein; TolC family type I secretion outer membrane protein 3171485..3172840 Nitrosomonas sp. AL212 10299735 YP_004296111.1 CDS NAL212_3191 NC_015222.1 3172889 3176296 R PFAM: Mechanosensitive ion channel MscS; KEGG: dac:Daci_2326 MscS mechanosensitive ion channel; mechanosensitive ion channel MscS complement(3172889..3176296) Nitrosomonas sp. AL212 10299736 YP_004296112.1 CDS NAL212_3192 NC_015222.1 3176936 3178324 D TIGRFAM: Poly(A) polymerase, PcnB; KEGG: nmu:Nmul_A0882 poly(A) polymerase; PFAM: Poly A polymerase, head domain; poly(A) polymerase 3176936..3178324 Nitrosomonas sp. AL212 10299738 YP_004296113.1 CDS NAL212_3193 NC_015222.1 3178343 3178831 D TIGRFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG: nmu:Nmul_A0881 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 3178343..3178831 Nitrosomonas sp. AL212 10299739 YP_004296114.1 CDS NAL212_3194 NC_015222.1 3178886 3179677 D TIGRFAM: Ketopantoate hydroxymethyltransferase; KEGG: net:Neut_2293 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; 3-methyl-2-oxobutanoate hydroxymethyltransferase 3178886..3179677 Nitrosomonas sp. AL212 10299740 YP_004296115.1 CDS NAL212_3195 NC_015222.1 3179692 3180516 D PFAM: Pantoate-beta-alanine ligase; manually curated; TIGRFAM: Pantoate-beta-alanine ligase; Cytidyltransferase-related; KEGG: nmu:Nmul_A0878 pantoate--beta-alanine ligase; HAMAP: Pantoate-beta-alanine ligase; pantothenate synthetase 3179692..3180516 Nitrosomonas sp. AL212 10299741 YP_004296116.1 CDS NAL212_0001 NC_015223.1 82 1317 R TIGRFAM: Secretion protein HlyD; KEGG: gfo:GFO_1187 HlyD family secretion protein; RND family efflux transporter MFP subunit complement(82..1317) Nitrosomonas sp. AL212 10299836 YP_004296117.1 CDS NAL212_0002 NC_015223.1 1343 5770 R KEGG: gfo:GFO_1186 AcrB/AcrD/AcrF family heavy metal cation efflux protein; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein; Outer membrane efflux protein; CzcA family heavy metal efflux pump complement(1343..5770) Nitrosomonas sp. AL212 10299744 YP_004296118.1 CDS NAL212_0003 NC_015223.1 5953 6318 R KEGG: nmu:Nmul_A2105 hypothetical protein; hypothetical protein complement(5953..6318) Nitrosomonas sp. AL212 10299745 YP_004296119.1 CDS NAL212_0004 NC_015223.1 6673 7683 R PFAM: Bile acid:sodium symporter; KEGG: bbe:BBR47_37520 hypothetical protein; bile acid:sodium symporter complement(6673..7683) Nitrosomonas sp. AL212 10299746 YP_004296120.1 CDS NAL212_0005 NC_015223.1 7881 8801 D KEGG: tcx:Tcr_1014 cation diffusion facilitator family transporter; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein; cation diffusion facilitator family transporter 7881..8801 Nitrosomonas sp. AL212 10299747 YP_004296121.1 CDS NAL212_0006 NC_015223.1 8902 9129 D manually curated; KEGG: svo:SVI_3236 hypothetical protein; hypothetical protein 8902..9129 Nitrosomonas sp. AL212 10299748 YP_004296122.1 CDS NAL212_0007 NC_015223.1 9682 10482 D KEGG: pol:Bpro_2506 hypothetical protein; hypothetical protein 9682..10482 Nitrosomonas sp. AL212 10299749 YP_004296123.1 CDS NAL212_0008 NC_015223.1 10509 10859 D KEGG: pol:Bpro_2507 hypothetical protein; hypothetical protein 10509..10859 Nitrosomonas sp. AL212 10299750 YP_004296124.1 CDS NAL212_0009 NC_015223.1 10927 11277 R KEGG: slt:Slit_2112 hypothetical protein; hypothetical protein complement(10927..11277) Nitrosomonas sp. AL212 10299751 YP_004296125.1 CDS NAL212_0011 NC_015223.1 11675 12451 D KEGG: bja:bll4865 putative carbonic anhydrase; PFAM: Carbonic anhydrase; SMART: Carbonic anhydrase; carbonic anhydrase 11675..12451 Nitrosomonas sp. AL212 10299829 YP_004296126.1 CDS NAL212_0013 NC_015223.1 12831 13508 D KEGG: rmr:Rmar_2140 transposase-like protein; transposase-like protein 12831..13508 Nitrosomonas sp. AL212 10299830 YP_004296127.1 CDS NAL212_0014 NC_015223.1 14755 17979 R KEGG: nmu:Nmul_A2108 heavy metal efflux pump CzcA; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein; CzcA family heavy metal efflux pump complement(14755..17979) Nitrosomonas sp. AL212 10299754 YP_004296128.1 CDS NAL212_0015 NC_015223.1 18009 19544 R TIGRFAM: Secretion protein HlyD; KEGG: nmu:Nmul_A2107 secretion protein HlyD; RND family efflux transporter MFP subunit complement(18009..19544) Nitrosomonas sp. AL212 10299755 YP_004296129.1 CDS NAL212_0016 NC_015223.1 19569 20996 R PFAM: Outer membrane efflux protein; KEGG: nmu:Nmul_A2106 outer membrane efflux protein; outer membrane efflux protein complement(19569..20996) Nitrosomonas sp. AL212 10299756 YP_004296130.1 CDS NAL212_0017 NC_015223.1 21119 21487 R KEGG: nmu:Nmul_A2105 hypothetical protein; hypothetical protein complement(21119..21487) Nitrosomonas sp. AL212 10299757 YP_004296131.1 CDS NAL212_0018 NC_015223.1 21977 22726 D KEGG: neu:NE2376 hypothetical protein; hypothetical protein 21977..22726 Nitrosomonas sp. AL212 10299758 YP_004296132.1 CDS NAL212_0019 NC_015223.1 22931 23392 D KEGG: noc:Noc_1222 hypothetical protein; hypothetical protein 22931..23392 Nitrosomonas sp. AL212 10299759 YP_004296133.1 CDS NAL212_0020 NC_015223.1 23484 24023 D PFAM: Redoxin; KEGG: nwa:Nwat_1110 redoxin domain-containing protein; redoxin domain-containing protein 23484..24023 Nitrosomonas sp. AL212 10299760 YP_004296134.1 CDS NAL212_0021 NC_015223.1 24054 24287 D KEGG: nhl:Nhal_2590 arginine decarboxylase; arginine decarboxylase 24054..24287 Nitrosomonas sp. AL212 10299761 YP_004296135.1 CDS NAL212_0022 NC_015223.1 24340 27045 D PFAM: Protein of unknown function DUF3570; KEGG: nhl:Nhal_2591 hypothetical protein; hypothetical protein 24340..27045 Nitrosomonas sp. AL212 10299762 YP_004296136.1 CDS NAL212_0024 NC_015223.1 28776 29195 R KEGG: slt:Slit_0565 flagellar basal-body rod protein FlgB; TIGRFAM: Flagellar basal-body rod protein FlgB; PFAM: Flagellar basal body rod protein, N-terminal; flagellar basal-body rod protein FlgB complement(28776..29195) Nitrosomonas sp. AL212 10299831 YP_004296137.1 CDS NAL212_0025 NC_015223.1 29483 29923 R PFAM: Lytic transglycosylase-like, catalytic; KEGG: axy:AXYL_06548 transglycosylase SLT domain-containing protein 6; Lytic transglycosylase catalytic complement(29483..29923) Nitrosomonas sp. AL212 10299764 YP_004296138.1 CDS NAL212_0026 NC_015223.1 29955 31043 R TIGRFAM: Conjugal transfer, TrbL; KEGG: pau:PA14_15540 putative mating pair formation protein TrbL; P-type conjugative transfer protein TrbL complement(29955..31043) Nitrosomonas sp. AL212 10299765 YP_004296139.1 CDS NAL212_0027 NC_015223.1 31076 31267 R KEGG: bpf:BpOF4_14260 ABC transporter (substrate-binding protein); hypothetical protein complement(31076..31267) Nitrosomonas sp. AL212 10299766 YP_004296140.1 CDS NAL212_0028 NC_015223.1 31291 32091 R TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: axy:AXYL_06544 P-type conjugative transfer protein TrbJ; P-type conjugative transfer protein TrbJ complement(31291..32091) Nitrosomonas sp. AL212 10299767 YP_004296141.1 CDS NAL212_0029 NC_015223.1 32109 33521 R PFAM: Type IV secretion system, VirB10 / TraB / TrbI; KEGG: bam:Bamb_6628 conjugal transfer protein TrbI; conjugation TrbI family protein complement(32109..33521) Nitrosomonas sp. AL212 10299768 YP_004296142.1 CDS NAL212_0030 NC_015223.1 33534 34031 R PFAM: Conjugal transfer, TrbH; KEGG: app:CAP2UW1_4726 conjugal transfer protein TrbH; Conjugal transfer TrbH family protein complement(33534..34031) Nitrosomonas sp. AL212 10299769 YP_004296143.1 CDS NAL212_0031 NC_015223.1 34034 34942 R KEGG: axy:AXYL_06541 P-type conjugative transfer protein TrbG; TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer, TrbG/VirB9/CagX; P-type conjugative transfer protein TrbG complement(34034..34942) Nitrosomonas sp. AL212 10299770 YP_004296144.1 CDS NAL212_0032 NC_015223.1 34957 35733 R PFAM: VirB8; KEGG: app:CAP2UW1_4728 conjugal transfer protein TrbF; VirB8 family protein complement(34957..35733) Nitrosomonas sp. AL212 10299771 YP_004296145.1 CDS NAL212_0033 NC_015223.1 35733 38267 R TIGRFAM: CagE, TrbE, VirB component of type IV transporter system; PFAM: CagE, TrbE, VirB component of type IV transporter system, central domain; KEGG: eba:p2B4 conjugal transfer protein TrbE; SMART: ATPase, AAA+ type, core; type IV secretion/conjugal transfer ATPase complement(35733..38267) Nitrosomonas sp. AL212 10299772 YP_004296146.1 CDS NAL212_0034 NC_015223.1 38264 38575 R PFAM: Type IV secretion system, VirB3 / TrbD / AvhB; KEGG: ajs:Ajs_4272 conjugal transfer protein TrbD; type IV secretory pathway VirB3 family protein complement(38264..38575) Nitrosomonas sp. AL212 10299773 YP_004296147.1 CDS NAL212_0035 NC_015223.1 38595 38990 R PFAM: Conjugal transfer,TrbC; KEGG: bam:Bamb_6634 conjugal transfer protein TrbC; conjugal transfer protein Trbc complement(38595..38990) Nitrosomonas sp. AL212 10299774 YP_004296148.1 CDS NAL212_0036 NC_015223.1 39012 39971 R TIGRFAM: ATPase, P-type conjugative transfer, TrbB; PFAM: Type II secretion system protein E; KEGG: llo:LLO_2875 LvhB11; SMART: ATPase, AAA+ type, core; P-type conjugative transfer ATPase TrbB complement(39012..39971) Nitrosomonas sp. AL212 10299775 YP_004296149.1 CDS NAL212_0037 NC_015223.1 40058 40420 R KEGG: app:CAP2UW1_4733 conjugal transfer protein TrbA; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; helix-turn-helix domain-containing protein complement(40058..40420) Nitrosomonas sp. AL212 10299776 YP_004296150.1 CDS NAL212_0038 NC_015223.1 40849 41913 D TIGRFAM: ParB-like partition protein; PFAM: Transcriptional repressor protein, KorB; ParB-like nuclease; KEGG: axy:AXYL_06612 transcriptional repressor protein KorB; SMART: ParB-like nuclease; parB-like partition protein 40849..41913 Nitrosomonas sp. AL212 10299777 YP_004296151.1 CDS NAL212_0039 NC_015223.1 41910 42275 D KEGG: eba:p2A235 putative conjugation protein TraO; putative conjugation protein TraO 41910..42275 Nitrosomonas sp. AL212 10299778 YP_004296152.1 CDS NAL212_0040 NC_015223.1 42481 42606 D hypothetical protein 42481..42606 Nitrosomonas sp. AL212 10299779 YP_004296153.1 CDS NAL212_0041 NC_015223.1 42787 44199 R KEGG: cpy:Cphy_1686 hypothetical protein; hypothetical protein complement(42787..44199) Nitrosomonas sp. AL212 10299780 YP_004296154.1 CDS NAL212_0042 NC_015223.1 44343 44927 R KEGG: swd:Swoo_1074 cytochrome c, class I; cytochrome c, class I complement(44343..44927) Nitrosomonas sp. AL212 10299781 YP_004296155.1 CDS NAL212_0043 NC_015223.1 44927 45517 R KEGG: swd:Swoo_1073 cytochrome P460; cytochrome P460 complement(44927..45517) Nitrosomonas sp. AL212 10299782 YP_004296156.1 CDS NAL212_0044 NC_015223.1 45752 46648 D PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: plm:Plim_1664 LysR substrate-binding protein; LysR family transcriptional regulator 45752..46648 Nitrosomonas sp. AL212 10299783 YP_004296157.1 CDS NAL212_0045 NC_015223.1 46671 47024 R KEGG: nmu:Nmul_B2811 hypothetical protein; hypothetical protein complement(46671..47024) Nitrosomonas sp. AL212 10299784 YP_004296158.1 CDS NAL212_0046 NC_015223.1 47017 47709 R KEGG: nmu:Nmul_B2810 ParA protein, putative; ParA protein complement(47017..47709) Nitrosomonas sp. AL212 10299785 YP_004296159.1 CDS NAL212_0049 NC_015223.1 51650 52765 R KEGG: nmu:Nmul_B2812 hypothetical protein; hypothetical protein complement(51650..52765) Nitrosomonas sp. AL212 10299833 YP_004296160.1 CDS NAL212_0050 NC_015223.1 52808 53251 R KEGG: llo:LLO_2896 TraM protein; TraM protein complement(52808..53251) Nitrosomonas sp. AL212 10299787 YP_004296161.1 CDS NAL212_0051 NC_015223.1 53248 53979 R PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: reu:Reut_D6529 conjugal transfer protein TraL; Cobyrinic acid ac-diamide synthase complement(53248..53979) Nitrosomonas sp. AL212 10299788 YP_004296162.1 CDS NAL212_0052 NC_015223.1 53979 54320 R KEGG: xfn:XfasM23_2251 hypothetical protein; hypothetical protein complement(53979..54320) Nitrosomonas sp. AL212 10299789 YP_004296163.1 CDS NAL212_0053 NC_015223.1 54690 55043 D KEGG: bcj:BCAL0172 conjugal transfer relaxosome component TraJ; conjugal transfer relaxosome component TraJ 54690..55043 Nitrosomonas sp. AL212 10299790 YP_004296164.1 CDS NAL212_0054 NC_015223.1 55059 56684 D PFAM: Endonuclease relaxase, MobA/VirD2; KEGG: app:CAP2UW1_4640 conjugal transfer relaxase TraI; Relaxase/mobilization nuclease family protein 55059..56684 Nitrosomonas sp. AL212 10299791 YP_004296165.1 CDS NAL212_0055 NC_015223.1 56684 58552 D PFAM: Ti-type conjugative transfer system, TraG-like; KEGG: app:CAP2UW1_4641 conjugal transfer coupling protein TraG; TRAG family protein 56684..58552 Nitrosomonas sp. AL212 10299792 YP_004296166.1 CDS NAL212_0056 NC_015223.1 58549 59088 D KEGG: bam:Bamb_6613 conjugal transfer peptidase TraF; TIGRFAM: Peptidase S26C, conjugative transfer signal peptidase TraF; PFAM: Peptidase S26, conserved region; conjugative transfer signal peptidase TraF 58549..59088 Nitrosomonas sp. AL212 10299793 YP_004296167.1 CDS NAL212_0057 NC_015223.1 59114 59332 D KEGG: xfn:XfasM23_2245 conjugal transfer protein; conjugal transfer protein 59114..59332 Nitrosomonas sp. AL212 10299794 YP_004296168.1 CDS NAL212_0058 NC_015223.1 59319 62231 D KEGG: app:CAP2UW1_4644 hypothetical protein; PFAM: Domain of unknown function DUF1738; Toprim domain; SMART: Toprim domain; hypothetical protein 59319..62231 Nitrosomonas sp. AL212 10299795 YP_004296169.1 CDS NAL212_0059 NC_015223.1 62365 62745 D KEGG: vei:Veis_4707 hypothetical protein; hypothetical protein 62365..62745 Nitrosomonas sp. AL212 10299796 YP_004296170.1 CDS NAL212_0060 NC_015223.1 62732 63046 D KEGG: ana:all1719 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; XRE family transcriptional regulator 62732..63046 Nitrosomonas sp. AL212 10299797 YP_004296171.1 CDS NAL212_0061 NC_015223.1 63103 63408 D KEGG: mfa:Mfla_0534 hypothetical protein; hypothetical protein 63103..63408 Nitrosomonas sp. AL212 10299798 YP_004296172.1 CDS NAL212_0062 NC_015223.1 63429 65012 R PFAM: Transposase, IS66; KEGG: gca:Galf_2413 transposase; transposase IS66 complement(63429..65012) Nitrosomonas sp. AL212 10299799 YP_004296173.1 CDS NAL212_0063 NC_015223.1 65066 65416 R KEGG: eba:ebB55 transposase, fragment; manually curated; PFAM: Transposase (putative), IS66 Orf2-like; IS66 Orf2 family protein complement(65066..65416) Nitrosomonas sp. AL212 10299800 YP_004296174.1 CDS NAL212_0064 NC_015223.1 65404 65700 R KEGG: dat:HRM2_44620 hypothetical protein; hypothetical protein complement(65404..65700) Nitrosomonas sp. AL212 10299801 YP_004296175.1 CDS NAL212_0065 NC_015223.1 65985 69602 R KEGG: ret:RHE_PF00102 putative DNA helicase protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; DEAD/DEAH box helicase domain-containing protein complement(65985..69602) Nitrosomonas sp. AL212 10299802 YP_004296176.1 CDS NAL212_0066 NC_015223.1 69605 70549 R KEGG: ret:RHE_PF00101 putative aminotransferase protein; putative aminotransferase protein complement(69605..70549) Nitrosomonas sp. AL212 10299803 YP_004296177.1 CDS NAL212_0067 NC_015223.1 70864 71145 R KEGG: cpc:Cpar_1878 histone family protein DNA-binding protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; histone family protein DNA-binding protein complement(70864..71145) Nitrosomonas sp. AL212 10299804 YP_004296178.1 CDS NAL212_0068 NC_015223.1 71356 71820 D KEGG: net:Neut_2558 hypothetical protein; hypothetical protein 71356..71820 Nitrosomonas sp. AL212 10299805 YP_004296179.1 CDS NAL212_0069 NC_015223.1 72507 73718 D PFAM: Domain of unknown function DUF262; KEGG: swd:Swoo_0706 hypothetical protein; hypothetical protein 72507..73718 Nitrosomonas sp. AL212 10299806 YP_004296180.1 CDS NAL212_0070 NC_015223.1 73711 74775 D PFAM: Domain of unknown function DUF3696, C-terminal; KEGG: vex:VEA_001831 hypothetical protein; hypothetical protein 73711..74775 Nitrosomonas sp. AL212 10299807 YP_004296181.1 CDS NAL212_0071 NC_015223.1 74777 75613 D KEGG: bfr:BF1768 hypothetical protein; hypothetical protein 74777..75613 Nitrosomonas sp. AL212 10299808 YP_004296182.1 CDS NAL212_0072 NC_015223.1 75665 76855 R KEGG: gbe:GbCGDNIH1_1519 putative cytoplasmic protein; PFAM: Bacteriophage T5, ORF172 DNA-binding; SMART: Bacteriophage T5, ORF172 DNA-binding; helicase A859L complement(75665..76855) Nitrosomonas sp. AL212 10299809 YP_004296183.1 CDS NAL212_0073 NC_015223.1 76848 78899 R PFAM: Helicase, C-terminal; KEGG: ajs:Ajs_2529 hypothetical protein; helicase domain-containing protein complement(76848..78899) Nitrosomonas sp. AL212 10299810 YP_004296184.1 CDS NAL212_0074 NC_015223.1 78896 81673 R KEGG: tin:Tint_1545 putative DNA methylase; putative DNA methylase complement(78896..81673) Nitrosomonas sp. AL212 10299811 YP_004296185.1 CDS NAL212_0075 NC_015223.1 81714 82172 R PFAM: Protein of unknown function DUF1917; KEGG: mem:Memar_2250 hypothetical protein; hypothetical protein complement(81714..82172) Nitrosomonas sp. AL212 10299812 YP_004296186.1 CDS NAL212_0076 NC_015223.1 82373 82714 R PFAM: PemK-like protein; KEGG: neu:NE1181 PemK-like protein; transcriptional modulator of MazE/toxin MazF complement(82373..82714) Nitrosomonas sp. AL212 10299813 YP_004296187.1 CDS NAL212_0077 NC_015223.1 82707 82937 R KEGG: neu:NE1182 CopG family protein; CopG family protein complement(82707..82937) Nitrosomonas sp. AL212 10299814 YP_004296188.1 CDS NAL212_0078 NC_015223.1 83180 83476 D KEGG: dat:HRM2_09780 hypothetical protein; TIGRFAM: Putative addiction module antidote protein, CC2985; PFAM: Uncharacterised protein family UPF0156/MetJ /Arc repressor; addiction module antidote protein 83180..83476 Nitrosomonas sp. AL212 10299815 YP_004296189.1 CDS NAL212_0079 NC_015223.1 83463 83810 D PFAM: Plasmid stabilisation system; KEGG: dat:HRM2_09770 hypothetical protein; plasmid stabilization system 83463..83810 Nitrosomonas sp. AL212 10299816 YP_004296190.1 CDS NAL212_0080 NC_015223.1 83812 84762 D PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; KEGG: app:CAP2UW1_4555 integrase family protein; integrase family protein 83812..84762 Nitrosomonas sp. AL212 10299817 YP_004296191.1 CDS NAL212_0081 NC_015223.1 85148 86434 R KEGG: dia:Dtpsy_2137 arsenical pump membrane protein; TIGRFAM: Arsenical pump membrane protein; PFAM: Arsenical pump membrane protein; arsenical pump membrane protein complement(85148..86434) Nitrosomonas sp. AL212 10299818 YP_004296192.1 CDS NAL212_0082 NC_015223.1 86493 86975 R KEGG: psa:PST_0240 arsenate reductase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; protein tyrosine phosphatase complement(86493..86975) Nitrosomonas sp. AL212 10299819 YP_004296193.1 CDS NAL212_0083 NC_015223.1 86978 87397 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bte:BTH_II0960 glyoxalase family protein family; glyoxalase/bleomycin resistance protein/dioxygenase complement(86978..87397) Nitrosomonas sp. AL212 10299820 YP_004296194.1 CDS NAL212_0084 NC_015223.1 87442 87771 R KEGG: bcj:BCAM0233 ArsR family regulatory protein; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; ArsR family transcriptional regulator complement(87442..87771) Nitrosomonas sp. AL212 10299821 YP_004296195.1 CDS NAL212_0085 NC_015223.1 88033 88356 D KEGG: har:HEAR1579 hypothetical protein; hypothetical protein 88033..88356 Nitrosomonas sp. AL212 10299822 YP_004296196.1 CDS NAL212_0086 NC_015223.1 88586 88942 D KEGG: nmu:Nmul_A1630 hypothetical protein; hypothetical protein 88586..88942 Nitrosomonas sp. AL212 10299823 YP_004296197.1 CDS NAL212_0087 NC_015223.1 89037 89357 D PFAM: Copper binding periplasmic protein CusF; KEGG: rfr:Rfer_0412 secretion protein HlyD; copper binding periplasmic protein cusF 89037..89357 Nitrosomonas sp. AL212 10299824 YP_004296198.1 CDS NAL212_0089 NC_015223.1 89772 90626 D PFAM: Fatty acid hydroxylase; KEGG: gca:Galf_1902 fatty acid hydroxylase; fatty acid hydroxylase 89772..90626 Nitrosomonas sp. AL212 10299834 YP_004296199.1 CDS NAL212_0091 NC_015223.1 91101 91715 D PFAM: Methyltransferase type 11; KEGG: gca:Galf_2172 methyltransferase type 12; type 11 methyltransferase 91101..91715 Nitrosomonas sp. AL212 10299835 YP_004296200.1 CDS NAL212_0092 NC_015223.1 91748 92155 R KEGG: nmu:Nmul_A0152 proline-rich region; proline-rich region complement(91748..92155) Nitrosomonas sp. AL212 10299827 YP_004296201.1 CDS NAL212_0093 NC_015223.1 92155 92271 R hypothetical protein complement(92155..92271) Nitrosomonas sp. AL212 10299828 NAL212_R0001 tRNA NAL212_R0001 NC_015222.1 245146 245221 R tRNA-Thr complement(245146..245221) Nitrosomonas sp. AL212 10296882 NAL212_R0002 tRNA NAL212_R0002 NC_015222.1 341394 341470 D tRNA-Arg 341394..341470 Nitrosomonas sp. AL212 10296961 NAL212_R0003 tRNA NAL212_R0003 NC_015222.1 510701 510776 D tRNA-Met 510701..510776 Nitrosomonas sp. AL212 10297135 NAL212_R0005 tRNA NAL212_R0005 NC_015222.1 661605 661681 D tRNA-Ile 661605..661681 Nitrosomonas sp. AL212 10297280 NAL212_R0006 tRNA NAL212_R0006 NC_015222.1 661692 661767 D tRNA-Ala 661692..661767 Nitrosomonas sp. AL212 10297281 NAL212_R0009 tRNA NAL212_R0009 NC_015222.1 724013 724088 D tRNA-Asn 724013..724088 Nitrosomonas sp. AL212 10297346 NAL212_R0010 tRNA NAL212_R0010 NC_015222.1 834510 834585 R tRNA-Glu complement(834510..834585) Nitrosomonas sp. AL212 10297444 NAL212_R0011 tRNA NAL212_R0011 NC_015222.1 834627 834702 R tRNA-Ala complement(834627..834702) Nitrosomonas sp. AL212 10297445 NAL212_R0012 tRNA NAL212_R0012 NC_015222.1 926573 926659 R tRNA-Leu complement(926573..926659) Nitrosomonas sp. AL212 10297522 NAL212_R0013 tRNA NAL212_R0013 NC_015222.1 929421 929512 R tRNA-Ser complement(929421..929512) Nitrosomonas sp. AL212 10297526 NAL212_R0014 tRNA NAL212_R0014 NC_015222.1 945577 945653 D tRNA-Val 945577..945653 Nitrosomonas sp. AL212 10297544 NAL212_R0016 tRNA NAL212_R0016 NC_015222.1 1274524 1274608 D tRNA-Leu 1274524..1274608 Nitrosomonas sp. AL212 10297874 NAL212_R0018 tRNA NAL212_R0018 NC_015222.1 1396801 1396890 R tRNA-Leu complement(1396801..1396890) Nitrosomonas sp. AL212 10297985 NAL212_R0019 tRNA NAL212_R0019 NC_015222.1 1396917 1396990 R tRNA-Cys complement(1396917..1396990) Nitrosomonas sp. AL212 10297986 NAL212_R0020 tRNA NAL212_R0020 NC_015222.1 1397102 1397176 R tRNA-Gly complement(1397102..1397176) Nitrosomonas sp. AL212 10297987 NAL212_R0021 tRNA NAL212_R0021 NC_015222.1 1453024 1453116 R tRNA-Ser complement(1453024..1453116) Nitrosomonas sp. AL212 10298034 NAL212_R0023 tRNA NAL212_R0023 NC_015222.1 1716433 1716508 D tRNA-Lys 1716433..1716508 Nitrosomonas sp. AL212 10298286 NAL212_R0024 tRNA NAL212_R0024 NC_015222.1 1910602 1910678 D tRNA-Arg 1910602..1910678 Nitrosomonas sp. AL212 10298483 NAL212_R0025 tRNA NAL212_R0025 NC_015222.1 1910745 1910820 D tRNA-Phe 1910745..1910820 Nitrosomonas sp. AL212 10298484 NAL212_R0026 tRNA NAL212_R0026 NC_015222.1 2096079 2096155 R tRNA-Pro complement(2096079..2096155) Nitrosomonas sp. AL212 10298652 NAL212_R0027 tRNA NAL212_R0027 NC_015222.1 2121281 2121356 R tRNA-Trp complement(2121281..2121356) Nitrosomonas sp. AL212 10298674 NAL212_R0028 tRNA NAL212_R0028 NC_015222.1 2122667 2122741 R tRNA-Thr complement(2122667..2122741) Nitrosomonas sp. AL212 10298676 NAL212_R0029 tRNA NAL212_R0029 NC_015222.1 2122794 2122867 R tRNA-Gly complement(2122794..2122867) Nitrosomonas sp. AL212 10298677 NAL212_R0030 tRNA NAL212_R0030 NC_015222.1 2122952 2123036 R tRNA-Tyr complement(2122952..2123036) Nitrosomonas sp. AL212 10298678 NAL212_R0031 tRNA NAL212_R0031 NC_015222.1 2129255 2129331 R tRNA-Asp complement(2129255..2129331) Nitrosomonas sp. AL212 10298683 NAL212_R0032 tRNA NAL212_R0032 NC_015222.1 2129348 2129423 R tRNA-Val complement(2129348..2129423) Nitrosomonas sp. AL212 10298684 NAL212_R0033 tRNA NAL212_R0033 NC_015222.1 2430889 2430965 D tRNA-Met 2430889..2430965 Nitrosomonas sp. AL212 10298995 NAL212_R0034 tRNA NAL212_R0034 NC_015222.1 2441743 2441818 R tRNA-Thr complement(2441743..2441818) Nitrosomonas sp. AL212 10299011 NAL212_R0035 tRNA NAL212_R0035 NC_015222.1 2478645 2478721 D tRNA-Pro 2478645..2478721 Nitrosomonas sp. AL212 10299047 NAL212_R0036 tRNA NAL212_R0036 NC_015222.1 2478755 2478831 D tRNA-Arg 2478755..2478831 Nitrosomonas sp. AL212 10299048 NAL212_R0037 tRNA NAL212_R0037 NC_015222.1 2478906 2478981 D tRNA-His 2478906..2478981 Nitrosomonas sp. AL212 10299049 NAL212_R0038 tRNA NAL212_R0038 NC_015222.1 2487206 2487290 R tRNA-Leu complement(2487206..2487290) Nitrosomonas sp. AL212 10299057 NAL212_R0039 tRNA NAL212_R0039 NC_015222.1 2510772 2510861 R tRNA-Ser complement(2510772..2510861) Nitrosomonas sp. AL212 10299085 NAL212_R0040 tRNA NAL212_R0040 NC_015222.1 2703802 2703886 R tRNA-Leu complement(2703802..2703886) Nitrosomonas sp. AL212 10299282 NAL212_R0041 tRNA NAL212_R0041 NC_015222.1 3019415 3019507 D tRNA-Ser 3019415..3019507 Nitrosomonas sp. AL212 10299562 NAL212_R0042 tRNA NAL212_R0042 NC_015222.1 3057145 3057221 R tRNA-Met complement(3057145..3057221) Nitrosomonas sp. AL212 10299617 NAL212_R0043 tRNA NAL212_R0043 NC_015222.1 3090563 3090637 D tRNA-Gln 3090563..3090637 Nitrosomonas sp. AL212 10299654 NAL212_R0044 tRNA NAL212_R0044 NC_015222.1 3127419 3127494 R tRNA-Arg complement(3127419..3127494) Nitrosomonas sp. AL212 10299691 NAL212_R0004 rRNA NAL212_R0004 NC_015222.1 659953 661478 D 16S ribosomal RNA 659953..661478 Nitrosomonas sp. AL212 10297279 NAL212_R0007 rRNA NAL212_R0007 NC_015222.1 662008 664935 D 23S ribosomal RNA 662008..664935 Nitrosomonas sp. AL212 10297282 NAL212_R0008 rRNA NAL212_R0008 NC_015222.1 665043 665155 D 5S ribosomal RNA 665043..665155 Nitrosomonas sp. AL212 10297283