-- dump date 20140619_163642 -- class Genbank::CDS -- table cds_note -- id note NP_273067.1 identified by similarity to EGAD:160712; match to protein family HMM PF00583 NP_273069.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation NP_273070.1 identified by similarity to EGAD:132655; match to protein family HMM PF02698 NP_273071.1 identified by similarity to EGAD:124632; match to protein family HMM PF03960; match to protein family HMM TIGR00014 NP_273072.1 identified by similarity to EGAD:143277 NP_273073.1 identified by similarity to EGAD:140012; match to protein family HMM PF00005; match to protein family HMM TIGR00960 NP_273074.1 identified by similarity to EGAD:140175; match to protein family HMM PF02687; match to protein family HMM TIGR00439 NP_273075.1 identified by similarity to EGAD:50503; match to protein family HMM PF01722 NP_273076.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway NP_273077.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active NP_273078.1 identified by similarity to EGAD:30886; match to protein family HMM PF03741 NP_273079.1 identified by similarity to EGAD:90450; match to protein family HMM PF04323 NP_273080.1 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A NP_273081.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate NP_273083.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis NP_273084.1 identified by similarity to GP:349016; match to protein family HMM PF00114; match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_338284.1 identified by similarity to GP:349528; match to protein family HMM PF00114 YP_338285.1 identified by similarity to EGAD:138647; match to protein family HMM PF00114 YP_338286.1 identified by similarity to EGAD:11801 YP_338287.1 identified by similarity to EGAD:40711 YP_338288.1 identified by similarity to EGAD:11802; match to protein family HMM PF00114 YP_338289.1 identified by similarity to EGAD:32664 YP_338290.1 identified by similarity to EGAD:138648 NP_273092.1 identified by similarity to EGAD:13664 NP_273093.1 Suggested gene symbol is fbp (PMID:1371354).; identified by similarity to EGAD:15191; match to protein family HMM PF00254 NP_273095.1 identified by similarity to EGAD:28541; match to protein family HMM PF00389; match to protein family HMM PF02826 NP_273096.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content NP_273097.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source NP_273099.1 identified by similarity to GP:974447; match to protein family HMM PF03562; match to protein family HMM PF06725 NP_273100.1 identified by similarity to EGAD:90733; match to protein family HMM PF03239 NP_273101.1 identified by similarity to EGAD:90734; match to protein family HMM PF04302 NP_273102.1 identified by similarity to EGAD:11971; match to protein family HMM PF04261; match to protein family HMM TIGR01412; match to protein family HMM TIGR01413 NP_273103.1 identified by similarity to EGAD:35919; match to protein family HMM PF03831; match to protein family HMM TIGR00686 NP_273104.1 identified by similarity to EGAD:40827; match to protein family HMM PF00132; match to protein family HMM PF00483; match to protein family HMM TIGR01173 NP_273107.1 identified by similarity to EGAD:159451; match to protein family HMM PF01547; match to protein family HMM TIGR01254 NP_273108.1 identified by similarity to GP:2708660; match to protein family HMM PF00924 NP_273109.1 identified by similarity to EGAD:32599; match to protein family HMM PF02464; match to protein family HMM TIGR00199 NP_273110.1 this is a fusion of 3 domains, an N-termianl thioredoxin domain, and 2 domains at the C-terminus that are methionine sulfoxide reductases, MsrA and MsrB; methionine is modified to form methionine sulfoxide during normal cellular processes and due to oxidat NP_273111.1 identified by similarity to EGAD:6624; match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064 NP_273113.1 identified by similarity to GP:2570056; match to protein family HMM PF01541 NP_273115.1 identified by similarity to EGAD:28668; match to protein family HMM PF05976; match to protein family HMM TIGR01666; match to protein family HMM TIGR01667 NP_273116.1 identified by similarity to EGAD:32627; match to protein family HMM PF00437; match to protein family HMM TIGR01420 NP_273117.1 identified by similarity to GP:3328331; match to protein family HMM PF00437; match to protein family HMM TIGR01420 NP_273118.1 identified by similarity to EGAD:10097; match to protein family HMM PF01168; match to protein family HMM TIGR00044 NP_273120.1 identified by similarity to EGAD:34246; match to protein family HMM PF01089; match to protein family HMM TIGR00112 NP_273121.1 identified by similarity to GP:3064140; match to protein family HMM PF01258; match to protein family HMM TIGR02420 NP_273124.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion NP_273125.1 identified by similarity to EGAD:133403; match to protein family HMM PF03169; match to protein family HMM TIGR00728; match to protein family HMM TIGR00733 NP_273126.1 identified by similarity to EGAD:23719; match to protein family HMM PF00483; match to protein family HMM TIGR01207 NP_273127.1 identified by similarity to EGAD:40672; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01181 NP_273128.1 identified by similarity to EGAD:16384; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01179 NP_273130.1 identified by similarity to EGAD:8424; match to protein family HMM PF00398 NP_273131.1 identified by similarity to GP:530041 NP_273132.1 identified by similarity to EGAD:19609; match to protein family HMM PF01354; match to protein family HMM PF03102 NP_273133.1 identified by similarity to EGAD:14454; match to protein family HMM PF02348 NP_273134.1 identified by similarity to GP:460145; match to protein family HMM PF02350 NP_273135.1 identified by similarity to EGAD:23947; match to protein family HMM PF02563 NP_273136.1 identified by similarity to EGAD:20633; match to protein family HMM PF02706; match to protein family HMM TIGR01010 NP_273137.1 identified by similarity to EGAD:15907; match to protein family HMM PF01061 NP_273138.1 identified by similarity to EGAD:15804; match to protein family HMM PF00005 NP_273139.1 identified by similarity to EGAD:97859; match to protein family HMM PF00575 NP_273140.1 identified by similarity to EGAD:150447 NP_273141.1 identified by similarity to EGAD:19406; match to protein family HMM TIGR01179 NP_273142.1 identified by similarity to EGAD:40672; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01181 NP_273143.1 identified by similarity to EGAD:23719; match to protein family HMM PF00483; match to protein family HMM TIGR01207 NP_273144.1 identified by similarity to GP:3132257; match to protein family HMM PF00908; match to protein family HMM TIGR01221 NP_273145.1 identified by similarity to EGAD:15481; match to protein family HMM PF05159 NP_273146.1 identified by similarity to EGAD:7740; match to protein family HMM PF05159 NP_273147.1 identified by similarity to EGAD:28525; match to protein family HMM PF03616; match to protein family HMM TIGR00210 NP_273150.1 identified by similarity to EGAD:16317; match to protein family HMM PF03349 NP_273151.1 identified by similarity to EGAD:21471; match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064 NP_273161.1 identified by similarity to GP:2909665; match to protein family HMM PF03412 NP_273163.1 identified by similarity to EGAD:108538; match to protein family HMM PF00583 NP_273164.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis NP_273165.1 involved in the allosteric regulation of aspartate carbamoyltransferase NP_273167.1 identified by similarity to EGAD:109565; match to protein family HMM PF01476 NP_273168.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) NP_273169.1 identified by similarity to EGAD:24704; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460 NP_273170.1 identified by similarity to EGAD:36279; match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563 NP_273172.1 identified by similarity to EGAD:163355; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 NP_273173.1 identified by similarity to EGAD:5624; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 NP_273174.1 identified by similarity to EGAD:27998; match to protein family HMM PF02481; match to protein family HMM TIGR00732 NP_273175.1 identified by similarity to EGAD:6532; match to protein family HMM PF04361 NP_273176.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining; maintains net negative superhelicity NP_273179.1 identified by similarity to EGAD:28447; match to protein family HMM PF01381 NP_273180.1 identified by similarity to EGAD:7463; match to protein family HMM PF03602; match to protein family HMM TIGR00095 NP_273181.1 identified by similarity to EGAD:13273; match to protein family HMM PF00037 NP_273182.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu NP_273183.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force NP_273184.1 Modulates Rho-dependent transcription termination NP_273185.1 binds directly to 23S ribosomal RNA NP_273186.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA NP_273188.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit NP_273189.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors NP_273190.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme NP_273191.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter NP_273193.1 identified by similarity to GP:3414689; match to protein family HMM PF04575 NP_273194.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance NP_273195.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit NP_273196.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene NP_273197.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu NP_273198.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex NP_273199.1 identified by similarity to GP:3901097 NP_273200.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin NP_273201.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA NP_273202.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel NP_273203.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation NP_273204.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA NP_273205.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center NP_273206.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation NP_273207.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e NP_273208.1 one of the stabilizing components for the large ribosomal subunit NP_273209.1 primary binding protein; helps mediate assembly; involved in translation fidelity NP_273210.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase NP_273211.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel NP_273212.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 NP_273213.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif NP_273214.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit NP_273215.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance NP_273216.1 binds 5S rRNA along with protein L5 and L25 NP_273217.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance NP_273218.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 NP_273219.1 late assembly protein NP_273220.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase NP_273221.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 NP_273222.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif NP_273223.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA NP_273224.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 NP_273225.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination NP_273226.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme NP_273227.1 is a component of the macrolide binding site in the peptidyl transferase center NP_273228.1 blocks the formation of polar Z-ring septums NP_273229.1 identified by similarity to EGAD:13527; match to protein family HMM PF01656; match to protein family HMM TIGR01968 NP_273230.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell NP_273231.1 identified by similarity to EGAD:137604; match to protein family HMM PF00126; match to protein family HMM PF03466 NP_273232.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain NP_273233.1 identified by similarity to EGAD:21714; match to protein family HMM PF02535 NP_273234.1 catalyzes the oxidative deamination of D-amino acids NP_273235.1 identified by similarity to EGAD:90049; match to protein family HMM PF01235; match to protein family HMM TIGR00835 NP_273236.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis NP_273237.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP NP_273238.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis NP_273239.1 identified by similarity to EGAD:24192; match to protein family HMM PF03938 NP_273240.1 identified by similarity to GP:2460281; match to protein family HMM PF01103; match to protein family HMM PF07244 NP_273241.1 identified by similarity to EGAD:8229; match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054 NP_273242.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate NP_273243.1 identified by similarity to EGAD:46780; match to protein family HMM PF01148 NP_273244.1 identified by similarity to EGAD:35926; match to protein family HMM PF01255; match to protein family HMM TIGR00055 NP_273245.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs NP_273246.1 identified by similarity to EGAD:9221 NP_273248.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA NP_273249.1 identified by similarity to EGAD:5746; match to protein family HMM PF01656 NP_273250.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids NP_273251.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs NP_273252.1 identified by similarity to EGAD:28821; match to protein family HMM PF01235; match to protein family HMM TIGR00835 NP_273253.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate) NP_273254.1 identified by similarity to GP:49116; match to protein family HMM PF00575; match to protein family HMM TIGR00757 NP_273256.1 identified by similarity to EGAD:7861; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 NP_273257.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM NP_273261.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis NP_273262.1 identified by similarity to SP:P23089; match to protein family HMM PF04355 NP_273263.1 identified by similarity to EGAD:14408; match to protein family HMM PF01475 NP_273264.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys NP_273265.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate NP_273266.1 identified by similarity to EGAD:90639; match to protein family HMM PF00037; match to protein family HMM PF04060; match to protein family HMM TIGR01944 NP_273267.1 identified by similarity to EGAD:29394; match to protein family HMM PF02080; match to protein family HMM PF02254 NP_273268.1 identified by similarity to GP:3402236; match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720 NP_273269.1 negatively supercoils closed circular double-stranded DNA NP_273271.1 identified by similarity to EGAD:28851; match to protein family HMM PF01432 NP_273272.1 identified by similarity to EGAD:32789; match to protein family HMM PF02659 NP_273273.1 identified by similarity to EGAD:21555; match to protein family HMM PF00199 NP_273274.1 identified by similarity to EGAD:7711; match to protein family HMM PF00309; match to protein family HMM PF04552; match to protein family HMM PF04963 NP_273275.1 identified by similarity to GP:3599932; match to protein family HMM PF00534 NP_273276.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP NP_273277.1 carries the fatty acid chain in fatty acid biosynthesis NP_273278.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors NP_273281.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme NP_273282.1 identified by similarity to EGAD:9780; match to protein family HMM PF00665; match to protein family HMM TIGR01199 NP_273283.1 identified by similarity to EGAD:106326; match to protein family HMM PF01863 NP_273284.1 identified by similarity to EGAD:28718 NP_273285.1 identified by similarity to EGAD:28719; match to protein family HMM PF03746 NP_273287.1 identified by similarity to EGAD:28721; match to protein family HMM PF02682; match to protein family HMM TIGR00370 NP_273289.1 identified by similarity to EGAD:14237; match to protein family HMM PF00580; match to protein family HMM TIGR01075 NP_273297.1 identified by similarity to GP:3025801; match to protein family HMM PF00507 NP_273298.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen NP_273299.1 Catalyzes the transfer of electrons from NADH to quinone NP_273300.1 Catalyzes the transfer of electrons from NADH to quinone NP_273301.1 Catalyzes the transfer of electrons from NADH to quinone NP_273302.1 identified by similarity to EGAD:102346; match to protein family HMM PF01512; match to protein family HMM TIGR01959 NP_273304.1 identified by similarity to GP:2570056; match to protein family HMM PF01541 NP_273305.1 Catalyzes the transfer of electrons from NADH to ubiquinone NP_273306.1 identified by similarity to EGAD:96512; match to protein family HMM PF00146 NP_273307.1 Catalyzes the transfer of electrons from NADH to quinone NP_273309.1 identified by similarity to EGAD:42978; match to protein family HMM PF00499 NP_273310.1 Catalyzes the transfer of electrons from NADH to quinone NP_273311.1 identified by similarity to EGAD:27990; match to protein family HMM PF02661 NP_273313.1 Catalyzes the transfer of electrons from NADH to ubiquinone NP_273314.1 Catalyzes the transfer of electrons from NADH to quinone NP_273315.1 Catalyzes the transfer of electrons from NADH to quinone NP_273317.1 identified by similarity to EGAD:28427; match to protein family HMM PF00348 NP_273318.1 catalyzes the bidirectional exonucleolytic cleavage of DNA NP_273319.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity NP_273320.1 identified by similarity to EGAD:28073; match to protein family HMM PF00005; match to protein family HMM PF00664 NP_273321.1 plays an essential role in ATP-dependent branch migration of the Holliday junction NP_273322.1 identified by similarity to EGAD:107494; match to protein family HMM PF03413 NP_273323.1 identified by similarity to EGAD:27846; match to protein family HMM PF03330; match to protein family HMM TIGR00413 NP_273324.1 identified by similarity to EGAD:8165; match to protein family HMM PF00588; match to protein family HMM TIGR00185 NP_273325.1 identified by similarity to EGAD:18112 NP_273326.1 identified by similarity to EGAD:8656; match to protein family HMM PF00561; match to protein family HMM TIGR01738 NP_273330.1 identified by similarity to GP:148221; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389 NP_273331.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water NP_273332.1 identified by similarity to EGAD:101623 NP_273333.1 identified by similarity to EGAD:90808; match to protein family HMM PF03023; match to protein family HMM TIGR01695 NP_273334.1 identified by similarity to EGAD:98963; match to protein family HMM PF01323 NP_273335.1 identified by similarity to EGAD:137413 NP_273336.1 identified by similarity to EGAD:7471; match to protein family HMM PF04453 NP_273337.1 identified by similarity to EGAD:7686; match to protein family HMM PF00639 NP_273338.1 identified by similarity to EGAD:28723; match to protein family HMM PF00773 NP_273339.1 identified by similarity to EGAD:155656; match to protein family HMM PF03641; match to protein family HMM TIGR00730 NP_273340.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide NP_273341.1 identified by similarity to EGAD:5824; match to protein family HMM PF04391 NP_273342.1 helicase involved in DNA repair and perhaps also replication NP_273344.1 identified by similarity to GP:1139588; match to protein family HMM PF00126; match to protein family HMM PF03466 NP_273345.1 identified by similarity to EGAD:160719; match to protein family HMM PF07681 NP_273346.1 identified by similarity to EGAD:51135 NP_273347.1 identified by similarity to EGAD:48295; match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783 NP_273348.1 identified by similarity to GP:2707768; match to protein family HMM PF01323 NP_273349.1 identified by similarity to EGAD:6526; match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959 NP_273350.1 identified by similarity to GP:706856; match to protein family HMM PF01578 NP_273353.1 identified by similarity to EGAD:36757; match to protein family HMM PF00633; match to protein family HMM TIGR00426; match to protein family HMM TIGR01259 NP_273357.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive NP_273358.1 identified by similarity to EGAD:8105; match to protein family HMM PF00186 NP_273359.1 identified by similarity to EGAD:49208; match to protein family HMM PF01928 NP_273360.1 identified by similarity to EGAD:89978; match to protein family HMM PF03653 NP_273362.1 identified by similarity to GP:3523136; match to protein family HMM PF04575; match to protein family HMM PF07719 NP_273364.1 identified by similarity to GP:146890; match to protein family HMM PF01551 NP_273365.1 identified by similarity to EGAD:8792; match to protein family HMM PF02592; match to protein family HMM TIGR00697 NP_273366.1 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis NP_273367.1 identified by similarity to EGAD:20365; match to protein family HMM PF00529 NP_273368.1 identified by similarity to EGAD:19655; match to protein family HMM PF07690; match to protein family HMM TIGR00711 NP_273370.1 required for 70S ribosome assembly NP_273371.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif NP_273372.1 identified by similarity to EGAD:19694; match to protein family HMM PF01360; match to protein family HMM TIGR01988 NP_273373.1 involved in the peptidyltransferase reaction during translation NP_273374.1 identified by similarity to EGAD:23167; match to protein family HMM PF00829; match to protein family HMM TIGR00061 NP_273375.1 identified by similarity to EGAD:8604; match to protein family HMM PF00348 NP_273378.1 identified by similarity to EGAD:21691; match to protein family HMM PF00437; match to protein family HMM PF05157; match to protein family HMM TIGR02538 NP_273379.1 identified by similarity to EGAD:36778; match to protein family HMM PF03884 NP_273380.1 identified by similarity to EGAD:40831; match to protein family HMM PF01121; match to protein family HMM TIGR00152 NP_273381.1 identified by similarity to EGAD:40757; match to protein family HMM PF01478; match to protein family HMM PF06750 NP_273382.1 identified by similarity to EGAD:40687; match to protein family HMM PF00482 NP_273383.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family NP_273384.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway NP_273385.1 Catalyzes a key regulatory step in fatty acid biosynthesis NP_273386.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids NP_273388.1 identified by similarity to EGAD:28234 NP_273389.1 identified by similarity to EGAD:134180; match to protein family HMM PF00903; match to protein family HMM TIGR00068 NP_273390.1 identified by similarity to GP:3413497; match to protein family HMM PF01476 NP_273391.1 Involved in cell division; probably involved in intracellular septation NP_273392.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity NP_273393.1 identified by similarity to EGAD:21163; match to protein family HMM PF01722 NP_273394.1 identified by similarity to EGAD:12394 NP_273396.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine NP_273397.1 identified by similarity to EGAD:6786; match to protein family HMM PF01207; match to protein family HMM TIGR00742 NP_273398.1 this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu NP_273400.1 catalyzes the reversible formation of D-erythrose 4-phosphate and D-fructose 6-phosphate from sedoheptulose 7-phosphate and D-glyceraldehyde 3-phosphate NP_273401.1 identified by similarity to EGAD:29719; match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393 NP_273402.1 identified by similarity to EGAD:155354; match to protein family HMM TIGR01662; match to protein family HMM TIGR01670 NP_273404.1 identified by similarity to EGAD:28154; match to protein family HMM PF03968 NP_273405.1 identified by similarity to EGAD:139998; match to protein family HMM PF00005 NP_273406.1 glycosyltransferase; polymerizes glycan strands in the peptidoglycan NP_273407.1 identified by similarity to EGAD:142367; match to protein family HMM PF01488; match to protein family HMM TIGR00507 NP_273408.1 identified by similarity to EGAD:130497; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653 NP_273409.1 identified by similarity to EGAD:147104; match to protein family HMM PF07690; match to protein family HMM TIGR00901 NP_273410.1 identified by similarity to EGAD:147105; match to protein family HMM PF01541 NP_273413.1 identified by similarity to EGAD:20116; match to protein family HMM PF06901 NP_273414.1 identified by similarity to EGAD:18289 NP_273423.1 identified by similarity to GP:4838555; match to protein family HMM PF06255 NP_273424.1 identified by similarity to GP:4838554 NP_273426.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling NP_273427.1 identified by similarity to EGAD:160513; match to protein family HMM PF01384 NP_273428.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III NP_273429.1 identified by similarity to EGAD:41030; match to protein family HMM PF00027; match to protein family HMM PF00325 NP_273430.1 identified by similarity to EGAD:32791; match to protein family HMM PF00126; match to protein family HMM PF03466 NP_273431.1 identified by similarity to EGAD:10394; match to protein family HMM PF00691 NP_273434.1 catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP NP_273435.1 identified by similarity to EGAD:28303; match to protein family HMM PF04608 NP_273436.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence NP_273437.1 identified by similarity to EGAD:62114; match to protein family HMM PF07690 NP_273438.1 identified by similarity to EGAD:7305; match to protein family HMM PF01263 NP_273439.1 identified by similarity to GP:3724125; match to protein family HMM PF03632; match to protein family HMM PF03633; match to protein family HMM PF03636 NP_273440.1 identified by similarity to EGAD:125152; match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01990; match to protein family HMM TIGR02009 NP_273441.1 identified by similarity to EGAD:18907; match to protein family HMM PF00890; match to protein family HMM TIGR00551 NP_273442.1 identified by similarity to GP:3647360; match to protein family HMM PF00893 NP_273443.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate NP_273444.1 identified by similarity to EGAD:161074 NP_273445.1 identified by similarity to EGAD:42463; match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078 NP_273447.1 identified by similarity to EGAD:91779; match to protein family HMM PF01022; match to protein family HMM TIGR01199 NP_273448.1 identified by similarity to EGAD:104607; match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633 NP_273449.1 identified by similarity to GP:3005554 NP_273450.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the protein from Pseudomonas does not have this domain NP_273451.1 identified by similarity to EGAD:13061; match to protein family HMM PF00474; match to protein family HMM TIGR00813; match to protein family HMM TIGR02121 NP_273453.1 identified by similarity to EGAD:36570; match to protein family HMM PF04380 NP_273454.1 identified by similarity to EGAD:28125; match to protein family HMM PF01078; match to protein family HMM TIGR00368 NP_273455.1 identified by similarity to EGAD:40704; match to protein family HMM PF05036; match to protein family HMM TIGR02223 NP_273456.1 identified by similarity to EGAD:98963; match to protein family HMM PF01323 NP_273457.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell NP_273458.1 identified by similarity to EGAD:48967; match to protein family HMM PF02636 NP_273459.1 MraZ; UPF0040; crystal structure shows similarity to AbrB NP_273460.1 identified by similarity to EGAD:17026; match to protein family HMM PF01795; match to protein family HMM TIGR00006 NP_273461.1 identified by similarity to EGAD:7061; match to protein family HMM TIGR02209 NP_273462.1 identified by similarity to EGAD:40734; match to protein family HMM PF00905; match to protein family HMM PF03717 NP_273463.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate NP_273464.1 identified by similarity to EGAD:28149; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143 NP_273466.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan NP_273467.1 identified by similarity to EGAD:91374; match to protein family HMM PF03937 NP_273468.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation NP_273469.1 identified by similarity to EGAD:28142; match to protein family HMM PF01098 NP_273470.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis NP_273471.2 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis NP_273472.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli NP_273473.1 identified by similarity to EGAD:21305; match to protein family HMM PF03799 NP_273474.1 identified by similarity to GP:2707899; match to protein family HMM PF02491; match to protein family HMM TIGR01174 NP_273475.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function NP_273476.1 identified by similarity to EGAD:44500; match to protein family HMM PF00860 NP_273478.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate NP_273479.1 catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity NP_273480.1 identified by similarity to EGAD:24560; match to protein family HMM PF01925 NP_273481.1 Catalyzes the conversion of citrate to isocitrate NP_273482.1 identified by similarity to EGAD:91576; match to protein family HMM PF04303; match to protein family HMM TIGR02334 NP_273483.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA NP_273484.1 identified by similarity to EGAD:28201; match to protein family HMM PF01300; match to protein family HMM TIGR00057 NP_273485.1 identified by similarity to EGAD:9130; match to protein family HMM PF02082; match to protein family HMM TIGR00738 NP_273487.1 identified by similarity to EGAD:148199; match to protein family HMM PF05940 NP_273488.1 identified by similarity to EGAD:156224; match to protein family HMM PF02153 NP_273489.1 identified by similarity to EGAD:47743; match to protein family HMM PF00795 NP_273490.1 identified by similarity to EGAD:9780; match to protein family HMM PF00665; match to protein family HMM TIGR01199 NP_273491.1 identified by similarity to EGAD:107888; match to protein family HMM PF00892 NP_273492.1 identified by similarity to EGAD:28252; match to protein family HMM PF07690; match to protein family HMM TIGR00710 NP_273493.1 identified by similarity to GP:4105530; match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842; match to protein family HMM TIGR01807 NP_273494.1 identified by similarity to EGAD:14344; match to protein family HMM PF02565; match to protein family HMM TIGR00613 NP_273495.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) NP_273499.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids NP_273500.1 identified by similarity to EGAD:29393; match to protein family HMM PF00293 NP_273502.1 identified by similarity to EGAD:48783; match to protein family HMM PF01170; match to protein family HMM PF02926 NP_273503.1 identified by similarity to EGAD:36618; match to protein family HMM PF01520 NP_273504.1 identified by similarity to EGAD:8343; match to protein family HMM PF02367; match to protein family HMM TIGR00150 NP_273505.1 converts L-glutamate to D-glutamate, a component of peptidoglycan NP_273506.1 identified by similarity to EGAD:156656; match to protein family HMM PF02661 NP_273507.1 identified by similarity to EGAD:40649; match to protein family HMM PF01298 NP_273508.1 identified by similarity to EGAD:145507; match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01776; match to protein family HMM TIGR01786 NP_273509.1 identified by similarity to EGAD:21832; match to protein family HMM PF01547 NP_273510.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase NP_273511.1 identified by similarity to EGAD:20225; match to protein family HMM PF02253 NP_273512.1 identified by similarity to EGAD:163702; match to protein family HMM PF04367 NP_273513.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes NP_273515.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis NP_273516.1 catalyzes the formation of putrescine from agmatine NP_273517.1 identified by similarity to EGAD:107946; match to protein family HMM PF00939; match to protein family HMM TIGR00785 NP_273518.1 identified by similarity to EGAD:91634; match to protein family HMM PF03734 NP_273519.1 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine NP_273520.1 identified by similarity to EGAD:28546; match to protein family HMM PF04301 NP_273521.1 identified by similarity to EGAD:28545; match to protein family HMM TIGR02072 NP_273524.1 identified by similarity to EGAD:156531; match to protein family HMM PF03029; match to protein family HMM TIGR00231 NP_273526.1 identified by similarity to EGAD:156541; match to protein family HMM PF03259 NP_273527.1 identified by similarity to GP:3758871 NP_273539.1 identified by similarity to GP:2623258; match to protein family HMM PF05594; match to protein family HMM PF05860; match to protein family HMM TIGR01731; match to protein family HMM TIGR01901 NP_273540.1 identified by similarity to SP:P03005 NP_273541.1 identified by similarity to EGAD:24391; match to protein family HMM PF01051 NP_273542.1 identified by similarity to EGAD:10212; match to protein family HMM PF03865 NP_273543.2 identified by similarity to EGAD:131268; match to protein family HMM PF04829; match to protein family HMM PF04830; match to protein family HMM PF05594; match to protein family HMM PF05860; match to protein family HMM TIGR01901 NP_273568.1 identified by similarity to EGAD:162585 NP_273569.1 RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; this protein contains a C-terminal extension of unknown function NP_273570.1 identified by similarity to EGAD:28204; match to protein family HMM PF06508; match to protein family HMM TIGR00364 NP_273572.1 identified by similarity to EGAD:28193; match to protein family HMM PF01242 NP_273573.1 identified by similarity to EGAD:12599; match to protein family HMM PF06993 NP_273574.1 identified by similarity to EGAD:28192; match to protein family HMM PF04055 NP_273575.1 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides NP_273576.1 identified by similarity to EGAD:28568; match to protein family HMM PF03553 NP_273577.1 identified by similarity to EGAD:16686; match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037 NP_273578.1 identified by similarity to EGAD:18451; match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083 NP_273579.1 identified by similarity to EGAD:29125 NP_273580.1 identified by similarity to EGAD:41134; match to protein family HMM PF07690; match to protein family HMM TIGR01272 NP_273581.1 identified by similarity to EGAD:15401; match to protein family HMM PF03553; match to protein family HMM TIGR00931 NP_273582.1 identified by similarity to EGAD:91441; match to protein family HMM PF00571; match to protein family HMM PF03471 NP_273583.1 identified by similarity to EGAD:91444; match to protein family HMM PF02130; match to protein family HMM TIGR00043 NP_273584.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis NP_273585.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate NP_273588.1 identified by similarity to EGAD:28220; match to protein family HMM PF02652; match to protein family HMM TIGR00795 NP_273589.1 catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine NP_273590.1 identified by similarity to EGAD:37839; match to protein family HMM PF02463; match to protein family HMM PF02483; match to protein family HMM TIGR02168 NP_273591.2 similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs NP_273592.1 identified by similarity to EGAD:20241; match to protein family HMM PF07963; match to protein family HMM TIGR02532 NP_273593.1 identified by similarity to EGAD:91761; match to protein family HMM PF00529; match to protein family HMM TIGR01730 NP_273594.1 identified by similarity to EGAD:91762; match to protein family HMM PF00005; match to protein family HMM PF02687 NP_273595.1 identified by similarity to GP:3135321 NP_273596.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity NP_273598.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria NP_273600.1 identified by similarity to EGAD:140303; match to protein family HMM PF00717 NP_273601.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors NP_273603.1 an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions NP_273604.1 identified by similarity to EGAD:29240; match to protein family HMM PF00132; match to protein family HMM PF06426; match to protein family HMM TIGR01172 NP_273605.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor NP_273606.1 identified by similarity to EGAD:28820; match to protein family HMM PF04400 NP_273607.1 identified by similarity to EGAD:28819; match to protein family HMM PF02424 NP_273608.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm NP_273609.1 Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol. NP_273610.1 Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm NP_273611.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm NP_273612.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm NP_273613.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm NP_273615.1 identified by similarity to EGAD:29947; match to protein family HMM PF04304 NP_273617.1 identified by similarity to GP:1272513; match to protein family HMM PF01037 NP_273618.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein NP_273619.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor NP_273620.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins NP_273621.1 identified by similarity to GP:2935358 NP_273622.1 identified by similarity to EGAD:35473; match to protein family HMM PF05048 NP_273623.1 identified by similarity to EGAD:35474; match to protein family HMM PF00005 NP_273624.1 identified by similarity to GP:2177177; match to protein family HMM PF05573 NP_273625.1 identified by similarity to EGAD:128939; match to protein family HMM PF05187 NP_273626.1 identified by similarity to GP:2909665; match to protein family HMM PF03412 NP_273627.1 identified by similarity to GP:4102010 NP_273628.1 identified by similarity to EGAD:20116; match to protein family HMM PF06901 NP_273629.1 identified by similarity to EGAD:18289; match to protein family HMM PF00353 NP_273630.1 identified by similarity to EGAD:16475; match to protein family HMM PF01297 NP_273631.1 identified by similarity to EGAD:15708; match to protein family HMM PF00950 NP_273632.1 identified by similarity to EGAD:153448; match to protein family HMM PF00005 NP_273633.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site NP_273634.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA NP_273635.1 Essential for efficient processing of 16S rRNA NP_273636.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity NP_273637.1 identified by similarity to EGAD:37591; match to protein family HMM PF00583; match to protein family HMM PF02629 NP_273638.1 identified by similarity to GP:208252; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 NP_273639.1 identified by similarity to EGAD:40657; match to protein family HMM PF00072; match to protein family HMM PF00486 NP_273642.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell NP_273643.1 identified by similarity to EGAD:35952; match to protein family HMM PF00902; match to protein family HMM TIGR00945 NP_273645.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes NP_273646.1 identified by similarity to EGAD:149280; match to protein family HMM PF01230 NP_273647.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis NP_273648.1 identified by similarity to EGAD:107561; match to protein family HMM PF00107 NP_273649.1 identified by similarity to EGAD:48895; match to protein family HMM PF00850 NP_273650.1 identified by similarity to EGAD:166065; match to protein family HMM PF02699; match to protein family HMM TIGR00739 NP_273651.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane NP_273652.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF NP_273653.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence NP_273654.1 identified by similarity to EGAD:19034; match to protein family HMM PF00005; match to protein family HMM TIGR01187 NP_273655.1 identified by similarity to EGAD:21628; match to protein family HMM PF00528 NP_273656.1 identified by similarity to EGAD:18692; match to protein family HMM PF00528 NP_273658.1 identified by similarity to EGAD:29135 NP_273659.1 identified by similarity to GP:3136068; match to protein family HMM PF00909; match to protein family HMM TIGR00836 NP_273661.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes NP_273662.1 catalyzes the formation of phosphoenolpyruvate from pyruvate NP_273663.1 identified by similarity to EGAD:7555; match to protein family HMM PF03618 NP_273664.1 identified by similarity to EGAD:155362; match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 NP_273665.1 identified by similarity to EGAD:28731; match to protein family HMM PF04305 NP_273666.1 identified by similarity to GP:4063381; match to protein family HMM PF03548; match to protein family HMM TIGR00547 NP_273667.1 identified by similarity to EGAD:21832; match to protein family HMM PF01547 NP_273668.1 identified by similarity to EGAD:29917; match to protein family HMM PF00132 NP_273669.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein NP_273670.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers NP_273671.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase NP_273672.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide NP_273673.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide NP_273674.1 identified by similarity to EGAD:28215; match to protein family HMM PF01515; match to protein family HMM TIGR00651 NP_273675.1 identified by similarity to EGAD:40676; match to protein family HMM PF00005 NP_273676.1 identified by similarity to EGAD:40675; match to protein family HMM PF00528 NP_273677.1 identified by similarity to EGAD:7909; match to protein family HMM PF01547 NP_273678.1 identified by similarity to EGAD:9780; match to protein family HMM PF00665; match to protein family HMM TIGR01199 NP_273680.1 catalyzes the formation of arginine from (N-L-arginino)succinate NP_273681.1 identified by similarity to EGAD:153516; match to protein family HMM PF00483; match to protein family HMM TIGR01099 NP_273682.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine NP_273684.1 catalyzes the hydrolysis of pyrophosphate to phosphate NP_273685.1 converts dATP to dAMP and pyrophosphate NP_273686.1 identified by similarity to GP:4838555; match to protein family HMM PF06255 NP_273688.1 identified by similarity to EGAD:16283; match to protein family HMM PF01337 NP_273694.1 identified by similarity to GP:4838554 NP_273695.1 identified by similarity to GP:4838555; match to protein family HMM PF06255 NP_273703.2 identified by similarity to EGAD:13777; match to protein family HMM TIGR00668 NP_273704.1 identified by similarity to EGAD:30582; match to protein family HMM PF01042; match to protein family HMM TIGR00004 NP_273705.1 identified by similarity to EGAD:137514; match to protein family HMM PF02462 NP_273707.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III NP_273708.1 identified by similarity to EGAD:14652; match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575 NP_273710.1 identified by similarity to EGAD:17713; match to protein family HMM PF01510 NP_273711.1 identified by similarity to EGAD:46980; match to protein family HMM PF02618; match to protein family HMM TIGR00247 NP_273712.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP) NP_273713.1 identified by similarity to GP:1799887; match to protein family HMM PF00390; match to protein family HMM PF03949 NP_273714.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate NP_273716.1 identified by similarity to EGAD:90683; match to protein family HMM PF03966 NP_273717.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS NP_273720.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis NP_273721.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits NP_273722.1 identified by similarity to EGAD:20133 NP_273723.1 identified by similarity to EGAD:45778; match to protein family HMM PF01206 NP_273724.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis NP_273725.1 Regulates rRNA biosynthesis by transcriptional antitermination NP_273726.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not NP_273728.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity NP_273729.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome NP_273730.1 catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis NP_273731.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus NP_273732.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway NP_273733.1 identified by similarity to EGAD:28218; match to protein family HMM PF02674 NP_273734.1 identified by similarity to EGAD:40704; match to protein family HMM PF05036; match to protein family HMM TIGR02223 NP_273735.1 identified by similarity to EGAD:40703; match to protein family HMM TIGR01499 NP_273736.1 identified by similarity to EGAD:40702 NP_273738.1 identified by similarity to EGAD:12339; match to protein family HMM PF00005 NP_273739.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin NP_273741.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate NP_273742.1 identified by similarity to GP:732874; match to protein family HMM PF02395; match to protein family HMM PF03212; match to protein family HMM PF03797; match to protein family HMM TIGR01414 NP_273744.1 identified by similarity to EGAD:32733; match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361 NP_273745.1 identified by similarity to EGAD:40678; match to protein family HMM PF03696 NP_273746.1 identified by similarity to EGAD:5430; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 NP_273747.1 identified by similarity to EGAD:109243; match to protein family HMM PF01758 NP_273748.1 identified by similarity to EGAD:9801; match to protein family HMM PF02578; match to protein family HMM TIGR00726 NP_273749.1 identified by similarity to EGAD:24661; match to protein family HMM PF04390 NP_273750.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA NP_273753.1 identified by similarity to EGAD:15764; match to protein family HMM PF03755; match to protein family HMM TIGR00255 NP_273754.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters NP_273755.1 Transfers the fatty acyl group on membrane lipoproteins NP_273759.1 identified by similarity to EGAD:40915; match to protein family HMM PF00034 NP_273760.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic NP_273761.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr) NP_273762.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) NP_273763.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits NP_273764.1 identified by similarity to GP:3095163; match to protein family HMM PF01632; match to protein family HMM TIGR00001 NP_273765.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit NP_273766.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily NP_273767.1 identified by similarity to EGAD:15667; match to protein family HMM PF00145; match to protein family HMM TIGR00675 NP_273768.1 identified by similarity to EGAD:14414 NP_273769.1 identified by similarity to EGAD:89170; match to protein family HMM PF01555 NP_273770.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily NP_273771.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control NP_273772.1 F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein NP_273774.1 identified by similarity to EGAD:28548; match to protein family HMM PF00202; match to protein family HMM TIGR00508 NP_273775.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium NP_273777.1 catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway NP_273778.1 identified by similarity to EGAD:15747; match to protein family HMM PF00359; match to protein family HMM TIGR01419 NP_273779.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system NP_273780.1 identified by similarity to EGAD:28161; match to protein family HMM PF03668 NP_273781.1 identified by similarity to EGAD:108433; match to protein family HMM PF01926; match to protein family HMM PF04079; match to protein family HMM TIGR00650 NP_273782.1 identified by similarity to GP:1788969; match to protein family HMM TIGR00634 NP_273783.1 identified by similarity to EGAD:90903 NP_273784.1 identified by similarity to EGAD:19920; match to protein family HMM PF06155 NP_273785.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone NP_273787.1 identified by similarity to EGAD:27899; match to protein family HMM PF01288; match to protein family HMM TIGR01498 NP_273788.1 identified by similarity to EGAD:36863; match to protein family HMM PF04247 NP_273789.1 identified by similarity to EGAD:108409; match to protein family HMM PF06962 NP_273790.1 identified by similarity to GP:146861; match to protein family HMM PF01423; match to protein family HMM TIGR02383 NP_273791.1 identified by similarity to EGAD:8088; match to protein family HMM PF00768 NP_273792.1 identified by similarity to EGAD:48892; match to protein family HMM PF00578 NP_273793.1 identified by similarity to EGAD:24225; match to protein family HMM PF00589; match to protein family HMM PF02899; match to protein family HMM TIGR02225 NP_273794.1 identified by similarity to GP:4378826; match to protein family HMM PF04324 NP_273795.1 identified by similarity to EGAD:46419 NP_273798.1 identified by similarity to GP:2662408; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01214 NP_273799.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase NP_273800.1 identified by similarity to EGAD:12417; match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726 NP_273801.1 identified by similarity to EGAD:89407 NP_273802.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate NP_273805.1 identified by similarity to EGAD:160962; match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139 NP_273806.1 identified by similarity to GP:3413203; match to protein family HMM PF00892 NP_273807.1 identified by similarity to EGAD:13376; match to protein family HMM PF00717; match to protein family HMM TIGR02227 NP_273808.1 binds to the ribosome on the universally-conserved alpha-sarcin loop NP_273809.1 identified by similarity to EGAD:109995; match to protein family HMM PF01048; match to protein family HMM TIGR01704 NP_273810.1 identified by similarity to EGAD:14316; match to protein family HMM PF00437; match to protein family HMM TIGR01420 NP_273811.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA NP_273812.1 identified by similarity to EGAD:38751; match to protein family HMM PF07238 NP_273813.1 identified by similarity to EGAD:6599; match to protein family HMM PF01026; match to protein family HMM TIGR00010 NP_273814.1 identified by similarity to EGAD:91807; match to protein family HMM PF03891 NP_273815.1 identified by similarity to EGAD:50035; match to protein family HMM PF00462; match to protein family HMM TIGR00365 NP_273816.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate NP_273818.1 identified by similarity to GP:2580593 NP_273819.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis NP_273820.1 identified by similarity to EGAD:22018; match to protein family HMM PF04375 NP_273823.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III NP_273824.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents NP_273825.1 identified by similarity to EGAD:157492; match to protein family HMM PF03625 NP_273826.1 identified by similarity to EGAD:6573; match to protein family HMM PF00581 NP_273827.1 identified by similarity to EGAD:28326; match to protein family HMM PF00580; match to protein family HMM TIGR00609 NP_273828.1 identified by similarity to EGAD:91404; match to protein family HMM PF04261; match to protein family HMM TIGR01413 NP_273829.1 identified by similarity to EGAD:30720; match to protein family HMM PF00497 NP_273830.1 identified by similarity to EGAD:90043; match to protein family HMM PF00528; match to protein family HMM TIGR01726 NP_273831.1 identified by similarity to GP:666983; match to protein family HMM PF00005 NP_273832.1 identified by similarity to EGAD:13620; match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880 NP_273833.1 identified by similarity to EGAD:28733; match to protein family HMM PF00160 NP_273834.1 identified by similarity to EGAD:29242; match to protein family HMM PF00939; match to protein family HMM TIGR00785 NP_273837.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation NP_273838.1 identified by similarity to EGAD:35606; match to protein family HMM PF03658 NP_273839.1 identified by similarity to EGAD:34195; match to protein family HMM PF03364 NP_273840.1 identified by similarity to EGAD:13183; match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241 NP_273841.1 identified by similarity to EGAD:22071; match to protein family HMM PF01728 NP_273842.1 identified by similarity to EGAD:133408; match to protein family HMM PF01985; match to protein family HMM TIGR00253 NP_273843.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate NP_273844.1 identified by similarity to EGAD:109991; match to protein family HMM PF01053 NP_273845.1 similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis NP_273846.1 identified by similarity to EGAD:28277; match to protein family HMM PF00881 NP_273847.1 identified by similarity to EGAD:9780; match to protein family HMM PF00665; match to protein family HMM TIGR01199 NP_273848.1 identified by similarity to EGAD:156128; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 NP_273849.1 catalyzes the phosphorylation of NAD to NADP NP_273851.1 identified by similarity to EGAD:91119 NP_273852.1 identified by similarity to EGAD:17310; match to protein family HMM PF00440 NP_273853.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis NP_273854.1 NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones NP_273856.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine NP_273857.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis NP_273864.1 metalloprotease NP_273865.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP NP_273866.1 OMP decarboxylase; OMPDCase; OMPdecase; type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase NP_273867.1 identified by similarity to GP:1017464; match to protein family HMM PF00294; match to protein family HMM TIGR02198 NP_273868.1 identified by similarity to EGAD:38043; match to protein family HMM PF00145; match to protein family HMM TIGR00675 NP_273870.1 identified by similarity to EGAD:22136; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR02197 NP_273871.1 identified by similarity to GP:450688; match to protein family HMM PF02384; match to protein family HMM PF02506; match to protein family HMM TIGR00497 NP_273872.1 identified by similarity to GP:4324608 NP_273873.1 identified by similarity to EGAD:6689 NP_273874.1 identified by similarity to EGAD:28865 NP_273875.1 identified by similarity to EGAD:9780; match to protein family HMM PF00665; match to protein family HMM TIGR01199 NP_273876.1 identified by similarity to EGAD:89363; match to protein family HMM PF00270; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348 NP_273877.1 identified by similarity to EGAD:17776; match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724 NP_273878.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA NP_273879.1 identified by similarity to EGAD:97967; match to protein family HMM PF00313 NP_273880.1 identified by similarity to EGAD:28167; match to protein family HMM PF01523 NP_273881.1 identified by similarity to EGAD:28166; match to protein family HMM PF04751 NP_273883.1 identified by similarity to GP:147550; match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644 NP_273884.1 identified by similarity to GP:3650360; match to protein family HMM PF01743; match to protein family HMM TIGR01942 NP_273886.1 identified by similarity to EGAD:91454; match to protein family HMM PF02562 NP_273890.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis NP_273892.1 Required for efficient pilin antigenic variation NP_273893.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains NP_273894.1 identified by similarity to EGAD:90623; match to protein family HMM PF07719 NP_273895.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG NP_273896.1 identified by similarity to GP:2909665; match to protein family HMM PF03412 NP_273908.1 identified by similarity to EGAD:161394; match to protein family HMM PF00849 NP_273909.1 identified by similarity to EGAD:162676 NP_273910.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine NP_273911.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate NP_273912.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine NP_273913.1 identified by similarity to EGAD:30939; match to protein family HMM PF07719 NP_273914.1 Incorporates lipoproteins in the outer membrane after they are released by the LolA protein NP_273915.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis NP_273916.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP NP_273917.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response NP_273918.1 identified by similarity to EGAD:10529; match to protein family HMM PF00768; match to protein family HMM PF07943 NP_273919.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway NP_273920.1 identified by similarity to EGAD:20843; match to protein family HMM PF00005; match to protein family HMM TIGR00968 NP_273921.1 identified by similarity to EGAD:49750; match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02140 NP_273922.1 identified by similarity to EGAD:14734; match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02139 NP_273924.1 identified by similarity to EGAD:28959; match to protein family HMM PF04140 NP_273925.1 identified by similarity to EGAD:12983; match to protein family HMM PF00081; match to protein family HMM PF02777 NP_273926.1 unwinds double stranded DNA NP_273927.1 identified by similarity to SP:P13253; match to protein family HMM PF07963; match to protein family HMM TIGR02532 NP_273928.1 identified by similarity to EGAD:38517; match to protein family HMM TIGR02523; match to protein family HMM TIGR02532 NP_273931.1 identified by similarity to SP:P35645; match to protein family HMM PF07963; match to protein family HMM TIGR02532 NP_273933.1 identified by similarity to EGAD:91802; match to protein family HMM PF03591 NP_273934.1 catalyzes the formation of dUMP from dUTP NP_273935.1 catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate NP_273936.1 identified by similarity to EGAD:17611; match to protein family HMM PF03883 NP_273950.1 identified by similarity to EGAD:140942; match to protein family HMM PF00717 NP_273951.1 identified by similarity to EGAD:9780; match to protein family HMM PF00665; match to protein family HMM TIGR01199 NP_273953.1 identified by similarity to GP:2688953 NP_273954.1 identified by similarity to EGAD:24580; match to protein family HMM PF04014 NP_273957.1 identified by similarity to EGAD:69439; match to protein family HMM PF05012; match to protein family HMM TIGR01550 NP_273959.1 identified by similarity to EGAD:5595; match to protein family HMM PF01609 NP_273960.1 identified by similarity to EGAD:40125; match to protein family HMM PF03971; match to protein family HMM TIGR00178 NP_273962.1 identified by similarity to EGAD:154767; match to protein family HMM PF07922 NP_273963.1 identified by similarity to EGAD:138762; match to protein family HMM PF01322 NP_273964.1 identified by similarity to EGAD:28429; match to protein family HMM PF00106 NP_273965.1 identified by similarity to EGAD:21663; match to protein family HMM PF03061 NP_273966.1 identified by similarity to EGAD:23177; match to protein family HMM PF00561; match to protein family HMM TIGR01249 NP_273968.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis NP_273969.1 identified by similarity to EGAD:36665; match to protein family HMM PF00860; match to protein family HMM TIGR00801 NP_273970.1 identified by similarity to EGAD:20604; match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186 NP_273971.1 identified by similarity to EGAD:45828; match to protein family HMM PF04306 NP_273972.1 identified by similarity to EGAD:22440; match to protein family HMM PF00383; match to protein family HMM PF04994 NP_273973.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity NP_273975.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA NP_273977.1 identified by similarity to EGAD:148309; match to protein family HMM PF07021; match to protein family HMM TIGR02081 NP_273978.1 Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine NP_273979.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif NP_273980.1 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome NP_273981.1 MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor NP_273982.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine NP_273984.1 identified by similarity to EGAD:48455; match to protein family HMM PF00462; match to protein family HMM PF00578; match to protein family HMM TIGR02190 NP_273985.1 Catalyzes the oxidation of dihydrolipoamide to lipoamide NP_273986.1 identified by similarity to GP:3273343; match to protein family HMM PF01127 NP_273987.1 identified by similarity to GP:3273344 NP_273988.1 identified by similarity to GP:3273345; match to protein family HMM PF00890; match to protein family HMM PF02910; match to protein family HMM PF07992; match to protein family HMM TIGR01812; match to protein family HMM TIGR01816 NP_273989.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase NP_273990.1 identified by similarity to EGAD:36673; match to protein family HMM PF03937 NP_273992.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH NP_273993.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide NP_273994.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA NP_273995.1 E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide NP_273997.1 catalyzes the interconversion of succinyl-CoA and succinate NP_273998.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle NP_273999.1 identified by similarity to GP:3139107 NP_274000.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate NP_274001.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine NP_274002.1 identified by similarity to GP:2114321; match to protein family HMM PF00593; match to protein family HMM PF07715 NP_274004.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity NP_274005.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate NP_274013.1 identified by similarity to GP:3758871 NP_274014.1 identified by similarity to EGAD:90558; match to protein family HMM PF02525 NP_274015.1 catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme NP_274017.1 forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm NP_274018.1 identified by similarity to EGAD:8936; match to protein family HMM PF00702; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488 NP_274019.1 identified by similarity to EGAD:47927; match to protein family HMM PF00654 NP_274020.1 involved in de novo purine biosynthesis NP_274021.1 identified by similarity to EGAD:143986; match to protein family HMM PF06252 NP_274023.1 identified by similarity to EGAD:21606 NP_274027.1 identified by similarity to EGAD:5595; match to protein family HMM PF01609 NP_274028.1 identified by similarity to EGAD:131908; match to protein family HMM PF03895; match to protein family HMM PF05662 NP_274029.1 identified by similarity to EGAD:30834; match to protein family HMM PF00301 NP_274030.1 identified by similarity to EGAD:38335; match to protein family HMM PF02771 NP_274031.2 identified by similarity to EGAD:40926; match to protein family HMM TIGR00778 NP_274033.1 component of the membrane-bound D-lactate oxidase, FAD-binding, NADH independent NP_274034.1 identified by similarity to EGAD:156263; match to protein family HMM PF00037; match to protein family HMM PF01565; match to protein family HMM PF02754; match to protein family HMM PF02913 NP_274035.1 identified by similarity to GP:3046395; match to protein family HMM PF01207 NP_274042.1 identified by similarity to EGAD:6473; match to protein family HMM PF01381 NP_274044.1 identified by similarity to EGAD:28463 NP_274050.1 identified by similarity to EGAD:28214; match to protein family HMM PF01713 NP_274051.1 identified by similarity to EGAD:18583; match to protein family HMM PF01547; match to protein family HMM TIGR00971 NP_274052.1 identified by similarity to EGAD:48492; match to protein family HMM PF00583 NP_274053.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway NP_274055.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine NP_274056.1 identified by similarity to EGAD:9780; match to protein family HMM PF00665; match to protein family HMM TIGR01199 NP_274057.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs NP_274058.1 identified by similarity to EGAD:36674; match to protein family HMM PF01571 NP_274059.1 identified by similarity to EGAD:132011; match to protein family HMM PF01042 NP_274060.1 identified by similarity to EGAD:91370; match to protein family HMM PF04073; match to protein family HMM TIGR00011 NP_274061.1 identified by similarity to EGAD:48808 NP_274062.1 identified by similarity to EGAD:28370 NP_274063.1 catalyzes the formation of fumarate from aspartate NP_274064.1 identified by similarity to EGAD:89838; match to protein family HMM PF04264 NP_274065.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis NP_274066.1 identified by similarity to EGAD:15581 NP_274067.1 identified by similarity to EGAD:19644; match to protein family HMM PF00145; match to protein family HMM TIGR00675 NP_274068.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D NP_274070.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate NP_274071.1 identified by similarity to EGAD:41093; match to protein family HMM TIGR02049 NP_274072.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase NP_274073.1 identified by similarity to EGAD:29365; match to protein family HMM PF02677 NP_274075.1 identified by similarity to EGAD:6528 NP_274076.1 identified by similarity to EGAD:135627; match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 NP_274078.1 identified by similarity to EGAD:21243; match to protein family HMM PF00175 NP_274080.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine NP_274083.1 identified by similarity to EGAD:14640; match to protein family HMM PF00126; match to protein family HMM PF03466 NP_274084.1 identified by similarity to EGAD:18338; match to protein family HMM PF00665; match to protein family HMM TIGR01199 NP_274085.1 identified by similarity to EGAD:28306; match to protein family HMM PF00005 NP_274086.1 identified by similarity to EGAD:14096; match to protein family HMM PF00597 NP_274087.1 identified by similarity to GP:1177565; match to protein family HMM PF07239 NP_274089.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate NP_274091.1 identified by similarity to EGAD:161107; match to protein family HMM PF01019; match to protein family HMM TIGR00066 NP_274092.1 identified by similarity to EGAD:89718; match to protein family HMM PF04325 NP_274093.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate NP_274094.1 identified by similarity to EGAD:17919; match to protein family HMM PF04378 NP_274095.1 identified by similarity to EGAD:155868; match to protein family HMM PF02660; match to protein family HMM TIGR00023 NP_274096.1 identified by similarity to EGAD:36572; match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526 NP_274097.1 identified by similarity to EGAD:45912; match to protein family HMM PF00293 NP_274098.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling NP_274100.1 identified by similarity to EGAD:30442; match to protein family HMM PF01580 NP_274101.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway NP_274102.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis NP_274103.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis NP_274104.1 identified by similarity to EGAD:7870; match to protein family HMM PF02810; match to protein family HMM TIGR02292 NP_274105.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein NP_274106.1 identified by similarity to EGAD:22297; match to protein family HMM PF00246 NP_274107.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate NP_274108.1 identified by similarity to GP:2243021; match to protein family HMM TIGR01488; match to protein family HMM TIGR01490 NP_274109.1 identified by similarity to EGAD:91757 NP_274110.1 identified by similarity to EGAD:28455 NP_274113.1 identified by similarity to EGAD:143678 NP_274115.1 identified by similarity to EGAD:28477 NP_274117.1 identified by similarity to EGAD:21606 NP_274120.1 identified by similarity to GP:3127075; match to protein family HMM PF07411 NP_274127.1 identified by similarity to EGAD:28497; match to protein family HMM PF06074 NP_274128.1 identified by similarity to EGAD:28498; match to protein family HMM PF04233; match to protein family HMM TIGR01641 NP_274129.1 identified by similarity to EGAD:28500 NP_274130.1 identified by similarity to EGAD:9780; match to protein family HMM PF00665; match to protein family HMM TIGR01199 NP_274132.1 identified by similarity to EGAD:28494; match to protein family HMM PF07030 NP_274135.1 identified by similarity to EGAD:28506; match to protein family HMM PF06274 NP_274140.1 identified by similarity to EGAD:28510; match to protein family HMM PF07157 NP_274141.1 identified by similarity to EGAD:94050; match to protein family HMM PF06893 NP_274142.1 identified by similarity to EGAD:28503; match to protein family HMM PF06890; match to protein family HMM TIGR01644 NP_274143.1 identified by similarity to EGAD:28504; match to protein family HMM PF07409 NP_274144.1 identified by similarity to EGAD:91160 NP_274145.1 identified by similarity to EGAD:68685; match to protein family HMM PF07484 NP_274148.1 identified by similarity to EGAD:48708; match to protein family HMM PF04365 NP_274149.1 identified by similarity to EGAD:28402 NP_274156.1 identified by similarity to EGAD:6851; match to protein family HMM PF00106 NP_274157.1 identified by similarity to EGAD:97074; match to protein family HMM PF01593 NP_274159.1 identified by similarity to EGAD:49612; match to protein family HMM PF00494 NP_274160.1 involved in the maturation of iron-sulfur cluster-containing proteins NP_274162.1 identified by similarity to EGAD:1534; similarity to EGAD:91259; match to protein family HMM PF00023 NP_274163.1 identified by similarity to EGAD:19142; match to protein family HMM PF00111; match to protein family HMM TIGR02007 NP_274166.1 identified by similarity to GP:3046317; match to protein family HMM PF04384 NP_274167.1 identified by similarity to EGAD:29941; match to protein family HMM PF01479 NP_274168.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein YP_338291.1 identified by similarity to EGAD:90825; match to protein family HMM PF01171; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433 NP_274169.2 identified by similarity to EGAD:107730; match to protein family HMM PF00588 NP_274173.1 identified by similarity to EGAD:19891; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01081 NP_274174.1 identified by similarity to EGAD:28044; match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433 NP_274178.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis NP_274179.1 hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide NP_274180.1 identified by similarity to EGAD:22695; match to protein family HMM PF00175; match to protein family HMM PF00258; match to protein family HMM PF00667; match to protein family HMM TIGR01931 NP_274181.1 identified by similarity to EGAD:18882; match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR02034 NP_274182.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP NP_274183.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite NP_274184.1 identified by similarity to EGAD:142433; match to protein family HMM PF00590; match to protein family HMM TIGR01469; match to protein family HMM TIGR01470 NP_274186.1 identified by similarity to EGAD:43078; match to protein family HMM PF01292 NP_274187.1 identified by similarity to GP:3449254; match to protein family HMM PF01256; match to protein family HMM TIGR00196 NP_274192.1 identified by similarity to EGAD:6851; match to protein family HMM PF00106 NP_274193.1 identified by similarity to EGAD:97074; match to protein family HMM PF01593 NP_274195.1 identified by similarity to EGAD:49612; match to protein family HMM PF00494 NP_274196.1 involved in the maturation of iron-sulfur cluster-containing proteins NP_274198.1 identified by similarity to EGAD:1534; similarity to EGAD:91259; match to protein family HMM PF00023 NP_274199.1 identified by similarity to EGAD:19142; match to protein family HMM PF00111; match to protein family HMM TIGR02007 NP_274202.1 identified by similarity to GP:3046317; match to protein family HMM PF04384 NP_274203.1 identified by similarity to EGAD:29941; match to protein family HMM PF01479 NP_274204.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein YP_338292.1 identified by similarity to EGAD:90825; match to protein family HMM PF01171; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433 NP_274205.2 identified by similarity to EGAD:107730; match to protein family HMM PF00588 NP_274209.1 identified by similarity to EGAD:19891; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01081 NP_274210.1 identified by similarity to EGAD:28044; match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433 NP_274214.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis NP_274215.1 hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide NP_274216.1 identified by similarity to EGAD:22695; match to protein family HMM PF00175; match to protein family HMM PF00258; match to protein family HMM PF00667; match to protein family HMM TIGR01931 NP_274217.1 identified by similarity to EGAD:18882; match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR02034 NP_274218.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP NP_274219.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite NP_274220.1 identified by similarity to EGAD:142433; match to protein family HMM PF00590; match to protein family HMM TIGR01469; match to protein family HMM TIGR01470 NP_274222.1 identified by similarity to EGAD:43078; match to protein family HMM PF01292 NP_274223.1 identified by similarity to GP:3449254; match to protein family HMM PF01256; match to protein family HMM TIGR00196 NP_274224.1 identified by similarity to EGAD:24044; match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394 NP_274225.1 identified by similarity to EGAD:24912; match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063 NP_274226.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate NP_274228.1 identified by similarity to EGAD:8965; match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM TIGR01693 NP_274229.1 identified by similarity to EGAD:10979; match to protein family HMM PF01381 NP_274231.1 identified by similarity to EGAD:98244; match to protein family HMM PF00210; match to protein family HMM TIGR00754 NP_274232.1 identified by similarity to EGAD:97939; match to protein family HMM PF00210; match to protein family HMM TIGR00754 NP_274235.1 identified by similarity to GP:551169; match to protein family HMM PF02794 NP_274239.1 identified by similarity to GP:2623258; match to protein family HMM PF05594; match to protein family HMM PF05860; match to protein family HMM TIGR01731; match to protein family HMM TIGR01901 NP_274241.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group NP_274242.2 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein NP_274243.1 identified by similarity to EGAD:17261; match to protein family HMM PF04359 NP_274244.1 identified by similarity to EGAD:107342; match to protein family HMM PF01594 NP_274245.1 identified by similarity to GP:2984585; match to protein family HMM PF01145 NP_274247.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine NP_274250.1 identified by similarity to EGAD:91449; match to protein family HMM PF00005 NP_274251.1 identified by similarity to EGAD:132841; match to protein family HMM PF04635 NP_274252.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine NP_274254.1 identified by similarity to EGAD:8583; match to protein family HMM PF00216 NP_274255.1 identified by similarity to EGAD:18728; match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM TIGR00763 NP_274257.1 identified by similarity to GP:3063663; match to protein family HMM TIGR01447 NP_274258.1 identified by similarity to EGAD:28534; match to protein family HMM PF00005; match to protein family HMM TIGR02211 NP_274259.1 identified by similarity to EGAD:91112; match to protein family HMM PF02687; match to protein family HMM TIGR02212 NP_274261.1 involved in a recombinational process of DNA repair, independent of the recBC complex NP_274262.1 identified by similarity to EGAD:91215 NP_274263.1 identified by similarity to EGAD:10818; match to protein family HMM PF03960; match to protein family HMM TIGR01617 NP_274264.1 identified by similarity to EGAD:91449; match to protein family HMM PF00005 NP_274265.1 catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases NP_274267.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration NP_274268.1 identified by similarity to EGAD:7745; match to protein family HMM PF00834; match to protein family HMM TIGR01163 NP_274270.1 identified by similarity to EGAD:49377; match to protein family HMM PF05673 NP_274271.2 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine NP_274272.1 identified by similarity to EGAD:8121; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF07730 NP_274273.1 identified by similarity to EGAD:9926; match to protein family HMM PF00072; match to protein family HMM PF00196 NP_274274.1 identified by similarity to EGAD:9780; match to protein family HMM PF00665; match to protein family HMM TIGR01199 NP_274275.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis NP_274277.1 catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate NP_274278.1 bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis NP_274280.1 identified by similarity to EGAD:28582; match to protein family HMM PF00004 NP_274281.1 identified by similarity to EGAD:9780; match to protein family HMM PF00665; match to protein family HMM TIGR01199 NP_274282.1 identified by similarity to EGAD:94080; match to protein family HMM PF04851 NP_274283.1 identified by similarity to EGAD:14824; match to protein family HMM PF00160 NP_274284.1 identified by similarity to EGAD:156097; match to protein family HMM PF02492; match to protein family HMM PF07683 NP_274285.1 identified by similarity to EGAD:43984 NP_274286.1 identified by similarity to EGAD:44606; match to protein family HMM PF01909 NP_274287.2 identified by similarity to EGAD:6546 NP_274288.1 identified by similarity to EGAD:107998; match to protein family HMM PF01451 NP_274289.1 identified by similarity to EGAD:30688; match to protein family HMM PF02595; match to protein family HMM TIGR00045 NP_274291.1 identified by similarity to EGAD:132853 NP_274292.1 identified by similarity to EGAD:28925; match to protein family HMM PF00403 NP_274294.1 identified by similarity to EGAD:38563; match to protein family HMM PF03062 NP_274296.1 activates fatty acids by binding to coenzyme A NP_274297.1 identified by similarity to EGAD:28684; match to protein family HMM PF02028; match to protein family HMM TIGR00842 NP_274298.1 identified by similarity to EGAD:142439 NP_274299.1 identified by similarity to EGAD:31033; match to protein family HMM TIGR02282 NP_274300.1 identified by similarity to EGAD:60787; match to protein family HMM PF00441 NP_274301.1 identified by similarity to EGAD:28258; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580 NP_274302.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5) NP_274303.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis NP_274305.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis NP_274306.1 identified by similarity to EGAD:36588; match to protein family HMM PF04977 NP_274307.1 identified by similarity to EGAD:28315; match to protein family HMM PF00111 NP_274308.2 B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA NP_274309.1 identified by similarity to GP:2961291 NP_274310.1 identified by similarity to EGAD:7155; match to protein family HMM PF00145; match to protein family HMM TIGR00675 NP_274311.1 Catalyzes the rate-limiting step in dNTP synthesis NP_274314.1 identified by similarity to EGAD:40820; match to protein family HMM PF01553; match to protein family HMM TIGR00530 NP_274315.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases NP_274317.1 identified by similarity to EGAD:8903; match to protein family HMM PF01464; match to protein family HMM PF01476; match to protein family HMM PF06474 NP_274318.1 identified by similarity to EGAD:165416; match to protein family HMM PF00849; match to protein family HMM TIGR00093 NP_274319.1 identified by similarity to EGAD:10189; match to protein family HMM PF02224; match to protein family HMM TIGR00017 NP_274320.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins NP_274321.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control NP_274322.1 identified by similarity to EGAD:28824; match to protein family HMM PF00376 NP_274323.1 identified by similarity to EGAD:28823; match to protein family HMM PF00107 NP_274324.1 identified by similarity to EGAD:28822; match to protein family HMM PF00756 NP_274325.1 identified by similarity to EGAD:30243; match to protein family HMM PF03969 NP_274326.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate NP_274327.1 identified by similarity to EGAD:39884; match to protein family HMM PF04055; match to protein family HMM TIGR00048 NP_274328.1 identified by similarity to EGAD:39885; match to protein family HMM PF00515; match to protein family HMM TIGR02521 NP_274329.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis NP_274331.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates NP_274332.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer NP_274333.1 identified by similarity to EGAD:30442; match to protein family HMM PF01580 NP_274334.1 identified by similarity to EGAD:28228; match to protein family HMM PF00860; match to protein family HMM TIGR00801 NP_274337.1 identified by similarity to EGAD:166539; match to protein family HMM PF01066; match to protein family HMM TIGR00473 NP_274339.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk NP_274340.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit NP_274341.1 identified by similarity to EGAD:22393 NP_274342.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 NP_274343.1 identified by similarity to EGAD:28163; match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292 NP_274344.1 identified by similarity to EGAD:98230; match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 NP_274345.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision NP_274346.1 identified by similarity to EGAD:91374 NP_274347.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine NP_274350.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion NP_274351.1 identified by similarity to GP:555748; match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225 NP_274352.1 identified by similarity to EGAD:27923; match to protein family HMM PF01551 NP_274354.1 identified by similarity to EGAD:7971; match to protein family HMM PF05981 NP_274355.1 identified by similarity to EGAD:36515; match to protein family HMM PF02622 NP_274356.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function NP_274357.1 identified by similarity to EGAD:91262; match to protein family HMM PF01557 NP_274358.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) NP_274360.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC NP_274361.1 Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA NP_274363.1 identified by similarity to GP:1006678; match to protein family HMM PF00070; match to protein family HMM PF00364; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350 NP_274365.1 identified by similarity to EGAD:15335; match to protein family HMM PF00459 NP_274366.1 identified by similarity to GP:3046324; match to protein family HMM PF00588; match to protein family HMM TIGR00050 NP_274369.1 identified by similarity to GP:606223; match to protein family HMM PF01189 NP_274371.1 identified by similarity to EGAD:91347; match to protein family HMM PF00171 NP_274372.1 identified by similarity to EGAD:44279; match to protein family HMM PF01914; match to protein family HMM TIGR00427 NP_274373.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain NP_274374.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA NP_274375.1 identified by similarity to EGAD:28126; match to protein family HMM PF04393 NP_274376.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA NP_274377.1 identified by similarity to EGAD:21136; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF08030 NP_274378.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate NP_274379.1 identified by similarity to GP:602963; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 NP_274380.1 identified by similarity to EGAD:105396; match to protein family HMM PF07690 NP_274381.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides NP_274382.1 identified by similarity to EGAD:105162; match to protein family HMM PF02540; match to protein family HMM TIGR00552 NP_274383.1 identified by similarity to EGAD:13856; match to protein family HMM PF03794 NP_274384.1 identified by similarity to EGAD:28738; match to protein family HMM PF00085; match to protein family HMM TIGR01068 NP_274385.1 identified by similarity to EGAD:91631 NP_274386.1 identified by similarity to EGAD:20681; match to protein family HMM PF00270; match to protein family HMM PF00271 NP_274389.1 DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate NP_274390.1 binds and unfolds substrates as part of the ClpXP protease NP_274391.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock NP_274392.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs NP_274393.1 identified by similarity to GP:4761135; match to protein family HMM PF01070 NP_274394.1 identified by similarity to EGAD:29015; match to protein family HMM PF02082; match to protein family HMM TIGR00738; match to protein family HMM TIGR02010 NP_274395.1 catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis NP_274396.1 identified by similarity to EGAD:90661; match to protein family HMM PF01592; match to protein family HMM TIGR01999 NP_274397.1 identified by similarity to EGAD:91885; match to protein family HMM PF01521; match to protein family HMM TIGR00049; match to protein family HMM TIGR02011 NP_274398.1 identified by similarity to EGAD:21493; match to protein family HMM PF03889 NP_274399.1 identified by similarity to EGAD:6265; match to protein family HMM PF00226; match to protein family HMM PF07743; match to protein family HMM TIGR00714 NP_274400.1 identified by similarity to EGAD:21888; match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01063 YP_338293.1 identified by similarity to GP:4200438 NP_274402.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family NP_274403.1 identified by similarity to EGAD:30099; match to protein family HMM PF01380; match to protein family HMM PF01418 NP_274404.1 catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate NP_274405.1 identified by similarity to EGAD:90181; match to protein family HMM TIGR01198 NP_274406.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate NP_274407.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate NP_274408.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate NP_274409.1 identified by similarity to EGAD:21839; match to protein family HMM PF00107 NP_274410.1 identified by similarity to GP:3860539; match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084 NP_274412.1 identified by similarity to GP:2661420; match to protein family HMM PF00080 NP_274413.1 identified by similarity to EGAD:5595; match to protein family HMM PF01609 NP_274414.1 identified by similarity to GP:505571; match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412; match to protein family HMM TIGR01846 NP_274417.1 identified by similarity to EGAD:22554 NP_274419.1 identified by similarity to EGAD:22554 NP_274424.1 identified by similarity to EGAD:16254 NP_274425.1 identified by similarity to EGAD:20116; match to protein family HMM PF06901 NP_274426.1 identified by similarity to EGAD:20116; match to protein family HMM PF06901 NP_274427.1 identified by similarity to EGAD:18289; match to protein family HMM PF00353 NP_274428.1 identified by similarity to EGAD:22470; match to protein family HMM PF01433; match to protein family HMM TIGR02414 NP_274429.1 identified by similarity to EGAD:89374 NP_274430.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA NP_274431.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity NP_274432.1 identified by similarity to GP:2773326; match to protein family HMM PF02954; match to protein family HMM TIGR01199 NP_274433.1 identified by similarity to EGAD:19890; match to protein family HMM PF01207; match to protein family HMM TIGR00737 NP_274434.1 identified by similarity to GP:4104820; match to protein family HMM PF00270; match to protein family HMM PF00271 NP_274435.1 identified by similarity to EGAD:156656; match to protein family HMM PF02661 NP_274437.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 NP_274440.1 identified by similarity to GP:2760920; match to protein family HMM PF00557 NP_274441.1 identified by similarity to GP:45187; match to protein family HMM PF00267 NP_274442.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus NP_274444.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis NP_274445.1 identified by similarity to EGAD:37581; match to protein family HMM PF00877 NP_274446.1 identified by similarity to EGAD:90768; match to protein family HMM PF00614 NP_274447.1 identified by similarity to EGAD:20464; match to protein family HMM PF07690 NP_274448.1 identified by similarity to EGAD:89510; match to protein family HMM PF02754 NP_274449.1 identified by similarity to EGAD:89507; match to protein family HMM PF02589 NP_274450.1 identified by similarity to EGAD:89509; match to protein family HMM PF00037; match to protein family HMM TIGR00273 NP_274451.1 identified by similarity to EGAD:19627; match to protein family HMM PF00731; match to protein family HMM TIGR01162 NP_274453.1 identified by similarity to EGAD:48809; match to protein family HMM PF01596 NP_274454.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex NP_274455.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA NP_274456.1 identified by similarity to EGAD:14782; match to protein family HMM PF02575; match to protein family HMM TIGR00103 NP_274457.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs NP_274458.1 catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis NP_274459.1 identified by similarity to EGAD:29271; match to protein family HMM PF00580; match to protein family HMM TIGR01074 NP_274460.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function NP_274461.1 identified by similarity to EGAD:21243; match to protein family HMM PF00175 NP_274462.1 identified by similarity to EGAD:157346; match to protein family HMM PF00929; match to protein family HMM TIGR00573 NP_274463.1 identified by similarity to EGAD:90034 NP_274465.1 identified by similarity to EGAD:40049; match to protein family HMM PF00037 NP_274468.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase NP_274469.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle NP_274470.1 identified by similarity to EGAD:133404; match to protein family HMM PF00892 NP_274471.1 identified by similarity to GP:1490785; match to protein family HMM PF00436; match to protein family HMM TIGR00621 NP_274472.1 identified by similarity to EGAD:91169; match to protein family HMM PF07690 NP_274473.1 identified by similarity to EGAD:107330; match to protein family HMM PF01464 NP_274474.1 identified by similarity to EGAD:37582; match to protein family HMM PF07605 NP_274475.1 identified by similarity to EGAD:28010; match to protein family HMM PF04575 NP_274476.1 identified by similarity to GP:3452466; match to protein family HMM PF02541 NP_274480.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA NP_274481.1 identified by similarity to EGAD:20010; match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724 NP_274482.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor NP_274483.1 identified by similarity to EGAD:19065; match to protein family HMM PF01361; match to protein family HMM TIGR00013 NP_274484.1 identified by similarity to EGAD:28416 NP_274485.1 identified by similarity to EGAD:20751; match to protein family HMM PF00208; match to protein family HMM PF02812 NP_274487.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities NP_274490.1 identified by similarity to EGAD:167992; match to protein family HMM PF03061 NP_274491.1 identified by similarity to EGAD:20336; match to protein family HMM PF01476; match to protein family HMM PF01551 NP_274492.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate NP_274493.1 identified by similarity to EGAD:91225; match to protein family HMM PF00571; match to protein family HMM PF03471; match to protein family HMM PF03741 NP_274495.1 identified by similarity to EGAD:8572 NP_274496.1 identified by similarity to EGAD:16804; match to protein family HMM PF00171; match to protein family HMM TIGR01780 NP_274501.1 identified by similarity to EGAD:8578; match to protein family HMM PF02554 NP_274502.1 identified by similarity to EGAD:6530; match to protein family HMM PF04328 NP_274504.1 identified by similarity to EGAD:91124; match to protein family HMM PF00849; match to protein family HMM TIGR00093 NP_274505.1 identified by similarity to EGAD:28219; match to protein family HMM PF00593; match to protein family HMM PF07715 NP_274506.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation. NP_274507.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs NP_274508.1 identified by similarity to EGAD:105670; match to protein family HMM PF00582 NP_274509.1 identified by similarity to EGAD:21693; match to protein family HMM PF00899 NP_274512.1 identified by similarity to EGAD:14314; match to protein family HMM PF02616 NP_274513.1 catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate NP_274514.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase NP_274517.1 identified by similarity to EGAD:103138; match to protein family HMM PF00528; match to protein family HMM TIGR01726 NP_274518.1 identified by similarity to EGAD:28294; match to protein family HMM PF00565 NP_274519.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway NP_274520.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate NP_274521.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers NP_274522.1 identified by similarity to EGAD:21587; match to protein family HMM PF00929; match to protein family HMM TIGR00573; match to protein family HMM TIGR01406 NP_274523.1 identified by similarity to EGAD:36624; match to protein family HMM PF07690 NP_274524.1 identified by similarity to GP:2398785; match to protein family HMM PF03597; match to protein family HMM TIGR00847 NP_274526.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA NP_274527.1 two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm NP_274529.1 identified by similarity to GP:2113820; match to protein family HMM PF00494 NP_274530.1 identified by similarity to EGAD:17346; match to protein family HMM PF00254 NP_274532.1 identified by similarity to EGAD:51447; match to protein family HMM PF01565; match to protein family HMM PF02913 NP_274533.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation NP_274534.1 identified by similarity to EGAD:40767; match to protein family HMM PF01075; match to protein family HMM TIGR02195 NP_274535.1 identified by similarity to EGAD:15497; match to protein family HMM PF01035; match to protein family HMM PF02870; match to protein family HMM TIGR00589 NP_274537.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica. NP_274538.1 identified by similarity to EGAD:29187 NP_274539.1 identified by similarity to EGAD:28880; match to protein family HMM PF03794 NP_274540.1 identified by similarity to EGAD:7135; match to protein family HMM PF00127 NP_274543.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins NP_274544.1 synthesizes RNA primers at the replication forks NP_274545.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria NP_274546.1 identified by similarity to EGAD:5595; match to protein family HMM PF01609 NP_274547.1 identified by similarity to EGAD:40813; match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01776; match to protein family HMM TIGR01786 NP_274548.1 identified by similarity to GP:3582728; match to protein family HMM PF01298 NP_274550.1 identified by similarity to GP:3402495; match to protein family HMM PF02486 NP_274555.1 identified by similarity to GP:3758871; match to protein family HMM PF05616 NP_274557.1 identified by similarity to EGAD:69712 NP_274558.1 identified by similarity to GP:3402502; match to protein family HMM PF05707 NP_274559.1 identified by similarity to EGAD:138632; match to protein family HMM PF01548; match to protein family HMM PF02371 NP_274560.1 identified by similarity to EGAD:137210 NP_274561.1 CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer NP_274562.1 identified by similarity to EGAD:141787; match to protein family HMM PF00501 NP_274563.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs NP_274564.1 identified by similarity to EGAD:156049; match to protein family HMM PF04314 NP_274565.1 identified by similarity to EGAD:13380; match to protein family HMM PF01219 NP_274566.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione NP_274567.2 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA NP_274568.1 identified by similarity to EGAD:102141; match to protein family HMM PF00455 NP_274569.1 identified by similarity to EGAD:91752; match to protein family HMM PF03956 NP_274570.1 identified by similarity to GP:2661693; match to protein family HMM PF00392; match to protein family HMM PF07729 NP_274571.1 identified by similarity to EGAD:91663; match to protein family HMM PF02566 NP_274573.1 identified by similarity to GP:1562542; match to protein family HMM PF00551; match to protein family HMM TIGR00639 NP_274574.1 identified by similarity to GP:2231726; match to protein family HMM PF00254; match to protein family HMM PF01346 NP_274575.1 identified by similarity to GP:2984772; match to protein family HMM PF04364 NP_274576.1 identified by similarity to EGAD:24062; match to protein family HMM PF03739 NP_274577.1 identified by similarity to EGAD:28691; match to protein family HMM PF03739 NP_274578.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate NP_274579.1 catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway NP_274580.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis NP_274581.1 identified by similarity to EGAD:108978; match to protein family HMM PF03992 NP_274582.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit NP_274583.1 identified by similarity to EGAD:28577; match to protein family HMM PF00205; match to protein family HMM PF02776; match to protein family HMM TIGR00118 NP_274584.1 identified by similarity to EGAD:156017; match to protein family HMM PF02630 NP_274585.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ NP_274587.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer NP_274588.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis NP_274589.2 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis NP_274590.1 identified by similarity to EGAD:155484; match to protein family HMM PF03446 NP_274591.1 identified by similarity to GP:2791909; match to protein family HMM PF01047 NP_274593.1 SohB; periplasmic protein; member of the peptidase S49 family NP_274594.1 identified by similarity to EGAD:19485; match to protein family HMM PF01066; match to protein family HMM TIGR00560 NP_274596.1 identified by similarity to EGAD:28075; match to protein family HMM PF02627; match to protein family HMM TIGR00778 NP_274597.1 identified by similarity to EGAD:28074; match to protein family HMM PF00165 NP_274599.1 identified by similarity to EGAD:157019; match to protein family HMM PF00892 NP_274600.1 identified by similarity to EGAD:16715; match to protein family HMM PF01547 NP_274601.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA NP_274607.1 identified by similarity to EGAD:5595; match to protein family HMM PF01609 NP_274608.1 identified by similarity to GP:3005554; match to protein family HMM PF01548; match to protein family HMM PF02371 NP_274609.1 identified by similarity to EGAD:19683; match to protein family HMM PF03595 NP_274610.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate NP_274611.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling NP_274612.1 identified by similarity to EGAD:152602; match to protein family HMM PF00512 NP_274613.1 identified by similarity to EGAD:21464; match to protein family HMM PF00072; match to protein family HMM PF02954; match to protein family HMM TIGR01199 NP_274614.1 identified by similarity to EGAD:5782; match to protein family HMM PF04445 NP_274615.1 identified by similarity to EGAD:150275; match to protein family HMM PF01053; match to protein family HMM TIGR01325 NP_274618.1 identified by similarity to EGAD:8642; match to protein family HMM PF00497 NP_274619.1 identified by similarity to SP:P14407; match to protein family HMM PF05681; match to protein family HMM PF05683; match to protein family HMM TIGR00722; match to protein family HMM TIGR00723 NP_274620.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain NP_274622.1 catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine NP_274623.1 with TehA confers resistance to tellurite NP_274624.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids NP_274625.1 identified by similarity to EGAD:159687; match to protein family HMM PF01230 NP_274626.1 identified by similarity to GP:3661475; match to protein family HMM PF02016; match to protein family HMM TIGR01409 NP_274627.1 identified by similarity to EGAD:40773; match to protein family HMM PF00255 NP_274628.1 identified by similarity to GP:2584871 NP_274629.1 identified by similarity to EGAD:17111; match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM PF07732; match to protein family HMM TIGR02376 NP_274631.1 identified by similarity to EGAD:138632; match to protein family HMM PF01548; match to protein family HMM PF02371 NP_274632.1 identified by similarity to GP:3402502; match to protein family HMM PF05707 NP_274633.1 identified by similarity to EGAD:69712 NP_274634.1 identified by similarity to GP:3758871; match to protein family HMM PF05616 NP_274640.1 identified by similarity to GP:3402495; match to protein family HMM PF02486 NP_274642.1 identified by similarity to EGAD:28537; match to protein family HMM PF00881 NP_274643.1 identified by similarity to EGAD:20220; match to protein family HMM PF00884; match to protein family HMM PF08019 NP_274645.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine NP_274646.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins NP_274647.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination NP_274648.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex NP_274651.1 identified by similarity to EGAD:45741; match to protein family HMM PF03006; match to protein family HMM TIGR01065 NP_274652.1 identified by similarity to EGAD:107412; match to protein family HMM PF01235; match to protein family HMM TIGR00835 NP_274653.1 identified by similarity to EGAD:35798; match to protein family HMM PF01709; match to protein family HMM TIGR01033 NP_274654.1 identified by similarity to EGAD:8910; match to protein family HMM PF02600 NP_274655.1 identified by similarity to EGAD:134822; match to protein family HMM PF01037 NP_274656.1 identified by similarity to EGAD:154434; match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492 NP_274657.1 identified by similarity to EGAD:44268; match to protein family HMM PF05167 NP_274658.1 ACT domain-containing protein NP_274659.1 identified by similarity to EGAD:107986; match to protein family HMM PF07661 NP_274660.1 involved in methylation of ribosomal protein L3 NP_274662.1 identified by similarity to EGAD:36757; match to protein family HMM PF00633; match to protein family HMM TIGR00426; match to protein family HMM TIGR01259 NP_274663.1 identified by similarity to EGAD:27976; match to protein family HMM PF02441; match to protein family HMM PF04127; match to protein family HMM TIGR00521 NP_274664.1 identified by similarity to EGAD:12642; match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691 NP_274665.1 identified by similarity to EGAD:28791; match to protein family HMM PF01192; match to protein family HMM TIGR00690 NP_274666.1 Essential for recycling GMP and indirectly, cGMP NP_274667.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis NP_274668.1 identified by similarity to EGAD:107896; match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 NP_274669.1 identified by similarity to EGAD:91300; match to protein family HMM PF01136 NP_274670.1 identified by similarity to EGAD:47695; match to protein family HMM PF01850 NP_274673.1 identified by similarity to EGAD:131251; match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01786 NP_274674.1 identified by similarity to GP:3091146; match to protein family HMM PF01126 NP_274675.1 identified by similarity to EGAD:91640; match to protein family HMM PF04403; match to protein family HMM TIGR00155 NP_274676.1 identified by similarity to EGAD:91619; match to protein family HMM PF02470 NP_274677.1 identified by similarity to EGAD:91019; match to protein family HMM PF03886 NP_274678.1 identified by similarity to EGAD:128731; match to protein family HMM PF03352 NP_274679.1 identified by similarity to EGAD:18113; match to protein family HMM PF00657 NP_274681.1 identified by similarity to GP:2231996; match to protein family HMM PF00034 NP_274682.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate NP_274683.1 catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs NP_274684.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis NP_274686.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling NP_274687.1 hydrolyzes diadenosine polyphosphate NP_274688.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA NP_274689.1 Catalyzes the reduction of sulfopyruvate to (R)-sulfolactate much more efficiently than the reverse reaction. Also catalyzes the reduction of oxaloacetate, alpha-ketoglutarate, and to a much lower extent, KHTCA, but not pyruvate. Involved in the biosynthes NP_274690.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 NP_274691.1 identified by similarity to EGAD:17549; match to protein family HMM PF01026 NP_274692.1 identified by similarity to EGAD:9104; match to protein family HMM PF00710 NP_274693.1 identified by similarity to EGAD:28619; match to protein family HMM PF00597 NP_274694.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate NP_274695.1 identified by similarity to EGAD:13523; match to protein family HMM PF00809; match to protein family HMM TIGR01496 NP_274696.1 identified by similarity to EGAD:164552 NP_274698.1 identified by similarity to EGAD:91077; match to protein family HMM PF01977; match to protein family HMM TIGR00148 NP_274700.1 carries the fatty acid chain in fatty acid biosynthesis NP_274701.1 identified by similarity to EGAD:131410 NP_274702.1 identified by similarity to EGAD:90492; match to protein family HMM PF01553 NP_274706.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis NP_274707.1 FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP NP_274708.1 identified by similarity to EGAD:124882; match to protein family HMM PF00535 NP_274709.1 identified by similarity to EGAD:40699; match to protein family HMM PF00534 NP_274711.1 identified by similarity to EGAD:109240; match to protein family HMM PF00209 NP_274712.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived NP_274713.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer NP_274714.1 identified by similarity to EGAD:37331; match to protein family HMM PF00392; match to protein family HMM PF07729 NP_274715.1 identified by similarity to EGAD:36535 NP_274716.1 identified by similarity to EGAD:9780; match to protein family HMM PF00665; match to protein family HMM TIGR01199 NP_274717.1 identified by similarity to EGAD:17129; match to protein family HMM PF02321; match to protein family HMM TIGR01845 NP_274718.1 identified by similarity to EGAD:152391; match to protein family HMM PF00873; match to protein family HMM TIGR00915 NP_274719.1 identified by similarity to EGAD:12931; match to protein family HMM PF00529; match to protein family HMM TIGR01730 NP_274720.1 identified by similarity to EGAD:19994; match to protein family HMM PF00440 NP_274722.1 identified by similarity to GP:5764655; match to protein family HMM PF03806; match to protein family HMM TIGR00819 NP_274723.1 identified by similarity to EGAD:8221; match to protein family HMM PF04257; match to protein family HMM TIGR01450 NP_274724.1 identified by similarity to EGAD:140494; match to protein family HMM PF03929 NP_274726.1 identified by similarity to EGAD:24821; match to protein family HMM PF00034; match to protein family HMM TIGR00782 NP_274727.1 CcoO; FixO NP_274728.1 CcoN; FixN NP_274729.1 identified by similarity to EGAD:36443; match to protein family HMM PF05299 NP_274730.1 identified by similarity to GP:2564977; match to protein family HMM PF04273; match to protein family HMM TIGR01244 NP_274731.1 identified by similarity to EGAD:145337; match to protein family HMM PF02472 NP_274732.1 identified by similarity to EGAD:145333; match to protein family HMM PF01618 NP_274733.1 identified by similarity to EGAD:153359; match to protein family HMM PF03544; match to protein family HMM TIGR01352 NP_274734.1 identified by similarity to EGAD:156566; match to protein family HMM PF02163 NP_274735.1 identified by similarity to EGAD:135324 NP_274737.1 cofactor involved in the reduction of disulfides NP_274738.1 identified by similarity to GP:2739435; match to protein family HMM PF01842; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691 NP_274739.1 identified by similarity to EGAD:40992; match to protein family HMM PF02321 NP_274740.1 identified by similarity to GP:558154; match to protein family HMM PF00529; match to protein family HMM TIGR01843 NP_274748.1 identified by similarity to GP:3758871; match to protein family HMM PF05616 NP_274749.1 identified by similarity to EGAD:69712 NP_274750.1 identified by similarity to GP:3402502; match to protein family HMM PF05707 NP_274751.1 identified by similarity to EGAD:138632; match to protein family HMM PF01548; match to protein family HMM PF02371 NP_274753.1 identified by similarity to EGAD:153654; match to protein family HMM PF04605 NP_274754.1 identified by similarity to EGAD:7068 NP_274759.1 identified by similarity to GP:3329425; match to protein family HMM PF02661 NP_274760.1 identified by similarity to EGAD:166833 NP_274761.1 identified by similarity to EGAD:97133; match to protein family HMM PF07804; match to protein family HMM PF07805 NP_274762.1 identified by similarity to EGAD:149243; match to protein family HMM PF03865 NP_274763.1 identified by similarity to EGAD:41441; match to protein family HMM PF02794 NP_274768.1 identified by similarity to EGAD:18919; match to protein family HMM PF05594; match to protein family HMM PF05860; match to protein family HMM TIGR01731; match to protein family HMM TIGR01901 NP_274770.1 identified by similarity to EGAD:18338; match to protein family HMM PF00665; match to protein family HMM TIGR01199 NP_274779.1 identified by similarity to GP:2623258; match to protein family HMM PF04829; match to protein family HMM PF04830; match to protein family HMM PF05594; match to protein family HMM PF05860; match to protein family HMM TIGR01901 NP_274780.1 identified by similarity to EGAD:131262; match to protein family HMM PF03865 NP_274786.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate NP_274787.1 catalyzes branch migration in Holliday junction intermediates NP_274788.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA NP_274789.1 identified by similarity to EGAD:5821; match to protein family HMM PF00462; match to protein family HMM TIGR02181 NP_274790.1 identified by similarity to EGAD:10184; match to protein family HMM TIGR00757 NP_274791.2 identified by similarity to EGAD:28685; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 NP_274792.1 identified by similarity to EGAD:45968; match to protein family HMM PF03600; match to protein family HMM TIGR00784 NP_274794.1 identified by similarity to EGAD:20585; match to protein family HMM PF03358 NP_274795.1 identified by similarity to GP:3249049; match to protein family HMM PF02113; match to protein family HMM TIGR00666 NP_274796.1 methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase NP_274798.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA NP_274799.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity NP_274800.1 identified by similarity to GP:3790606; match to protein family HMM PF01578 NP_274801.1 identified by similarity to GP:3790604; match to protein family HMM PF05140 NP_274802.1 identified by similarity to EGAD:18580; match to protein family HMM PF00034 NP_274803.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential NP_274804.1 identified by similarity to EGAD:138031; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 NP_274805.1 identified by similarity to EGAD:151887; match to protein family HMM TIGR01175 NP_274806.1 identified by similarity to EGAD:151888; match to protein family HMM PF05137 NP_274807.1 identified by similarity to GP:1914829; match to protein family HMM PF04350 NP_274808.1 identified by similarity to EGAD:40689; match to protein family HMM PF04351 NP_274809.1 This PilQ differs from other reported Neisseria PilQ sequences primarily in the length of a repeat region and in the reading frame at the extreme C-terminus, where this sequence follows the consensus of homologs from non-Neisserial species.; identified by similarity to EGAD:40690; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660; match to protein family HMM TIGR02515 NP_274810.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis NP_274811.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis NP_274812.1 identified by similarity to GP:2661442; match to protein family HMM PF00310 NP_274813.1 identified by similarity to GP:2661443; match to protein family HMM PF03477 NP_274814.1 identified by similarity to EGAD:27967; match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326 NP_274815.1 identified by similarity to EGAD:165571; match to protein family HMM PF01943 NP_274817.1 identified by similarity to GB:3299889; match to protein family HMM PF00132; match to protein family HMM PF02397 NP_274818.1 identified by similarity to GP:3299890; match to protein family HMM PF01041 NP_274819.1 identified by similarity to GP:3299891; match to protein family HMM PF02719; match to protein family HMM PF07993 NP_274820.1 transaminase C; catalyzes transamination of alanine, valine, and 2-aminobutyrate with their respective 2-keto acids; also catalyzes terminal step in valine biosynthesis NP_274821.1 identified by similarity to EGAD:28400; match to protein family HMM PF02231 NP_274823.2 identified by similarity to EGAD:13382; match to protein family HMM PF01479 NP_274824.1 identified by similarity to EGAD:20624; match to protein family HMM PF01336; match to protein family HMM PF02231; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594 NP_274825.1 identified by similarity to GP:2738251; match to protein family HMM PF00756 NP_274826.1 identified by similarity to EGAD:8251; match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783 NP_274827.1 identified by similarity to EGAD:13772; match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 NP_274828.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway NP_274829.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis NP_274830.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 1 subfamily; some organisms carry two different copies of this enzyme NP_274831.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities NP_274832.1 identified by similarity to EGAD:13660; match to protein family HMM PF00579; match to protein family HMM TIGR00234 NP_274833.1 identified by similarity to EGAD:153711; match to protein family HMM PF01757 NP_274835.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 NP_274836.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate NP_274837.1 identified by similarity to EGAD:21387; match to protein family HMM PF00892 NP_274838.1 identified by similarity to EGAD:48360; match to protein family HMM PF00483 NP_274839.1 identified by similarity to GP:3002549; match to protein family HMM PF01613; match to protein family HMM TIGR02296 NP_274840.1 identified by similarity to EGAD:43166; match to protein family HMM PF01047; match to protein family HMM TIGR02337 NP_274842.1 identified by similarity to GP:2327006 NP_274843.1 identified by similarity to EGAD:97951 NP_274845.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers NP_274848.1 identified by similarity to EGAD:28177; match to protein family HMM PF04480 NP_274851.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity NP_274852.1 identified by similarity to EGAD:15923; match to protein family HMM PF00126; match to protein family HMM PF03466 NP_274853.1 identified by similarity to EGAD:90558; match to protein family HMM PF02525 NP_274855.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step NP_274856.1 composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism NP_274857.1 identified by similarity to EGAD:27995; match to protein family HMM PF00289; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM TIGR00514 NP_274858.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype NP_274859.1 3'-5' exoribonuclease specific for small oligoribonuclotides NP_274860.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway NP_274862.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) NP_274863.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate NP_274864.1 identified by similarity to GP:2625019; match to protein family HMM PF00589; match to protein family HMM PF02899; match to protein family HMM TIGR02224 NP_274865.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis NP_274867.1 identified by similarity to EGAD:90678; match to protein family HMM PF00814 NP_274868.1 identified by similarity to EGAD:8763; match to protein family HMM PF00583; match to protein family HMM TIGR01575 NP_274869.1 identified by similarity to EGAD:157119 NP_274870.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate NP_274872.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis NP_274873.1 identified by similarity to EGAD:132306; match to protein family HMM PF00326; match to protein family HMM PF02897 NP_274876.1 identified by similarity to EGAD:108974; match to protein family HMM PF01497 NP_274877.1 identified by similarity to EGAD:108081; match to protein family HMM PF07883 NP_274878.1 identified by similarity to EGAD:8251; match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783 NP_274880.1 identified by similarity to EGAD:156337; match to protein family HMM PF00581 NP_274881.1 identified by similarity to EGAD:23058; match to protein family HMM PF01135 NP_274882.1 identified by similarity to EGAD:91612; match to protein family HMM PF01590 NP_274883.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate NP_274884.1 identified by similarity to EGAD:23175; match to protein family HMM PF03840; match to protein family HMM TIGR00810 NP_274886.1 identified by similarity to EGAD:19883; match to protein family HMM PF06296 NP_274887.1 identified by similarity to EGAD:24379; match to protein family HMM PF01381 NP_274889.1 identified by similarity to EGAD:108383 NP_274890.1 identified by similarity to EGAD:28856 NP_274891.1 identified by similarity to EGAD:6380; match to protein family HMM PF06044 NP_274892.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase NP_274893.1 identified by similarity to EGAD:40759; match to protein family HMM PF04355 NP_274895.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate NP_274896.1 binds the polymerase to DNA and acts as a sliding clamp NP_274897.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. NP_274898.1 in Escherichia coli transcription of this gene is enhanced by polyamines NP_274899.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates NP_274900.1 identified by similarity to EGAD:108432; match to protein family HMM PF01809; match to protein family HMM TIGR00278 NP_274901.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria NP_274902.1 identified by similarity to EGAD:47901; match to protein family HMM PF00590 NP_274903.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell NP_274904.1 identified by similarity to EGAD:19555; match to protein family HMM PF02620 NP_274905.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not NP_274906.1 identified by similarity to EGAD:133045; match to protein family HMM PF00156 NP_274907.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY NP_274910.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs NP_274911.1 identified by similarity to EGAD:107750; match to protein family HMM PF06961 NP_274912.1 identified by similarity to EGAD:22444; match to protein family HMM PF00698; match to protein family HMM TIGR00128 NP_274913.1 identified by similarity to EGAD:6816; match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR02203 NP_274914.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway NP_274915.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis NP_274918.1 identified by similarity to GP:1658411; match to protein family HMM PF00459 NP_274919.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase NP_274920.1 identified by similarity to EGAD:40826; match to protein family HMM PF01755 NP_274921.1 identified by similarity to EGAD:40776 NP_274922.1 identified by similarity to EGAD:40825; match to protein family HMM PF01755 NP_274923.1 identified by similarity to EGAD:40824; match to protein family HMM PF00535 NP_274924.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA NP_274926.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA NP_274927.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane NP_274928.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit NP_274929.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit NP_274930.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit NP_274931.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex NP_274932.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel. NP_274933.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0 NP_274934.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 NP_274938.1 identified by similarity to EGAD:137275; match to protein family HMM PF02195; match to protein family HMM TIGR00180 NP_274939.1 catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate NP_274940.1 identified by similarity to EGAD:30554; match to protein family HMM PF03180 NP_274941.1 identified by similarity to GP:303561; match to protein family HMM PF00528 NP_274942.1 identified by similarity to GP:1208966; match to protein family HMM PF00005 NP_274943.1 identified by similarity to EGAD:23218; match to protein family HMM PF01464 NP_274944.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA NP_274945.1 identified by similarity to EGAD:149888; match to protein family HMM PF02637 NP_274946.1 identified by similarity to EGAD:140928; match to protein family HMM PF04386 NP_274947.1 identified by similarity to EGAD:140927; match to protein family HMM PF00043; match to protein family HMM PF02798 NP_274949.1 identified by similarity to GP:1916729; match to protein family HMM PF03596; match to protein family HMM TIGR00779 NP_274950.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome NP_274952.1 identified by similarity to EGAD:109028 NP_274953.1 identified by similarity to EGAD:91226; match to protein family HMM PF03061; match to protein family HMM TIGR00051 NP_274955.1 identified by similarity to EGAD:90986; match to protein family HMM PF04333 NP_274957.1 identified by similarity to EGAD:163193; match to protein family HMM PF05494 NP_274958.1 identified by similarity to EGAD:28106; match to protein family HMM PF02470 NP_274959.1 identified by similarity to EGAD:28097; match to protein family HMM PF02405; match to protein family HMM TIGR00056 NP_274960.1 identified by similarity to EGAD:28098; match to protein family HMM PF00005 NP_274961.1 identified by similarity to EGAD:49771; match to protein family HMM PF00165 NP_274962.1 NAD-linked NP_274963.1 identified by similarity to EGAD:23198; match to protein family HMM PF00082; match to protein family HMM PF03797; match to protein family HMM TIGR01414 NP_274964.1 identified by similarity to EGAD:90483; match to protein family HMM PF00425 NP_274965.1 identified by similarity to GP:3523136; match to protein family HMM PF04575 NP_274966.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth NP_274967.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring NP_274968.1 identified by similarity to EGAD:29502; match to protein family HMM PF00209 NP_274969.1 identified by similarity to EGAD:6236; match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048 NP_274971.1 defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly NP_274972.1 identified by similarity to EGAD:28633; match to protein family HMM PF03601; match to protein family HMM TIGR00698 NP_274973.1 identified by similarity to EGAD:29414 NP_274974.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2 NP_274975.1 identified by similarity to EGAD:23009; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF01612; match to protein family HMM PF02739; match to protein family HMM TIGR00593 NP_274977.1 identified by similarity to GP:1408569; match to protein family HMM PF02395; match to protein family HMM PF03212; match to protein family HMM PF03797; match to protein family HMM TIGR01414 NP_274979.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE NP_274980.1 identified by similarity to EGAD:133971; match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783 NP_274981.1 identified by similarity to EGAD:108974; match to protein family HMM PF01497 NP_274982.1 identified by similarity to EGAD:108968; match to protein family HMM PF01032 NP_274983.1 identified by similarity to EGAD:108970; match to protein family HMM PF01032 NP_274985.1 identified by similarity to EGAD:108972; match to protein family HMM PF00005 NP_274986.1 identified by similarity to GP:2735093; match to protein family HMM PF03895 NP_274987.1 identified by similarity to EGAD:7369; match to protein family HMM PF00543 NP_274988.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis NP_274989.1 identified by similarity to EGAD:35929; match to protein family HMM PF00753 NP_274990.1 identified by similarity to GP:1408569; match to protein family HMM PF02395; match to protein family HMM PF03212; match to protein family HMM PF03797; match to protein family HMM TIGR01414 NP_274991.1 identified by similarity to EGAD:107500; match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400 NP_274992.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers NP_274993.1 identified by similarity to EGAD:91561; match to protein family HMM PF00877 NP_274995.1 identified by similarity to EGAD:9831; match to protein family HMM PF03788 NP_274996.1 identified by similarity to EGAD:8297; match to protein family HMM PF04172 NP_274997.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate NP_274998.1 identified by similarity to EGAD:47927; match to protein family HMM PF00654 NP_274999.1 identified by similarity to GP:1742299 NP_275000.1 identified by similarity to EGAD:42946 NP_275002.1 identified by similarity to EGAD:8243; match to protein family HMM PF00884 NP_275003.1 identified by similarity to GP:1742310 NP_275004.1 identified by similarity to EGAD:161488; match to protein family HMM PF06114; match to protein family HMM TIGR01199 NP_275008.1 identified by similarity to GP:2073462; match to protein family HMM PF07963; match to protein family HMM TIGR02532 NP_275009.1 identified by similarity to EGAD:18958; match to protein family HMM PF00633; match to protein family HMM TIGR00426; match to protein family HMM TIGR01259 NP_275010.1 identified by similarity to EGAD:27877; match to protein family HMM PF00849; match to protein family HMM TIGR01621 NP_275011.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA NP_275012.1 identified by similarity to EGAD:6204; match to protein family HMM PF01027 NP_275013.1 identified by similarity to EGAD:27927; match to protein family HMM PF04362 NP_275014.1 SPOUT methyltransferase; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA NP_275015.1 identified by similarity to EGAD:27850; match to protein family HMM PF02410; match to protein family HMM TIGR00090 NP_275016.1 identified by similarity to EGAD:45797; match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR00482 NP_275017.1 identified by similarity to EGAD:108434; match to protein family HMM PF00484 NP_275018.1 identified by similarity to GP:3319739; match to protein family HMM PF00528 NP_275019.1 identified by similarity to EGAD:36585; match to protein family HMM PF02447; match to protein family HMM TIGR00791 NP_275020.1 identified by similarity to EGAD:30331; match to protein family HMM TIGR01313 NP_275021.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine NP_275022.1 Involved in ubiquinone biosynthesis NP_275023.1 identified by similarity to EGAD:28929; match to protein family HMM PF03222; match to protein family HMM TIGR00837 NP_275024.1 Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate NP_275025.1 identified by similarity to EGAD:162666; match to protein family HMM PF01553 NP_275026.1 identified by similarity to EGAD:105006; match to protein family HMM PF01863 NP_275027.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability NP_275029.1 identified by similarity to EGAD:108126; match to protein family HMM PF02452 NP_275030.1 identified by similarity to EGAD:7492; match to protein family HMM PF00267 NP_275031.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine NP_275032.1 identified by similarity to EGAD:53884; match to protein family HMM PF00293 NP_275033.1 identified by similarity to EGAD:28341; match to protein family HMM PF00005 NP_275034.1 identified by similarity to EGAD:19051; match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417 NP_275035.1 identified by similarity to EGAD:17827; match to protein family HMM PF00381; match to protein family HMM TIGR01003 NP_275036.1 identified by similarity to EGAD:24904; match to protein family HMM PF03610 NP_275037.1 Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively NP_275038.1 catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA NP_275039.1 identified by similarity to EGAD:91564; match to protein family HMM PF00753 NP_275040.1 identified by similarity to EGAD:23818; match to protein family HMM PF02646 NP_275041.1 identified by similarity to EGAD:10603; match to protein family HMM PF02167 NP_275042.1 identified by similarity to EGAD:10936; match to protein family HMM PF00032; match to protein family HMM PF00033 NP_275043.1 identified by similarity to EGAD:24965; match to protein family HMM PF00355; match to protein family HMM TIGR01409; match to protein family HMM TIGR01416 NP_275044.1 identified by similarity to EGAD:109841; match to protein family HMM PF01784; match to protein family HMM TIGR00486 NP_275045.1 identified by similarity to EGAD:28725; match to protein family HMM PF00126; match to protein family HMM PF03466 NP_275046.1 forms a direct contact with the tRNA during translation NP_275047.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit NP_275048.1 identified by similarity to EGAD:29842; match to protein family HMM PF05164 NP_275050.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate NP_275051.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate NP_275052.1 identified by similarity to EGAD:12848; match to protein family HMM PF00899; match to protein family HMM PF05237 NP_275053.1 identified by similarity to EGAD:19441; match to protein family HMM PF04102 NP_275054.1 identified by similarity to EGAD:28966; match to protein family HMM PF03553 NP_275055.1 identified by similarity to EGAD:37566; match to protein family HMM TIGR00536 NP_275056.1 identified by similarity to EGAD:30245; match to protein family HMM PF01523 NP_275057.1 identified by similarity to EGAD:158421; match to protein family HMM PF02133; match to protein family HMM TIGR02358 NP_275058.1 identified by similarity to GP:2627327; match to protein family HMM PF01266 NP_275059.1 identified by similarity to EGAD:10927; match to protein family HMM PF02581; match to protein family HMM TIGR00693 NP_275060.1 identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683 NP_275061.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate NP_275065.1 activates biotin to form biotinyl-5'-adenylate and transfers the biotin moiety to biotin-accepting proteins and catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP NP_275066.1 identified by similarity to EGAD:41926; match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR02199 NP_275067.1 identified by similarity to EGAD:28554; match to protein family HMM PF06271 NP_275068.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde NP_275071.1 identified by similarity to EGAD:19899; match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633 NP_275072.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA NP_275074.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication NP_275076.1 identified by similarity to EGAD:28643; match to protein family HMM PF00590; match to protein family HMM TIGR00096 NP_275077.1 identified by similarity to EGAD:89286; match to protein family HMM PF02021; match to protein family HMM TIGR00252 NP_275078.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate NP_275079.1 identified by similarity to EGAD:28637; match to protein family HMM PF04972 NP_275081.1 identified by similarity to EGAD:13057; match to protein family HMM PF00557; match to protein family HMM TIGR00500 NP_275083.1 identified by similarity to EGAD:126793 NP_275084.1 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate NP_275086.1 identified by similarity to GP:2897873 NP_275087.1 identified by similarity to EGAD:33024; match to protein family HMM PF01812 NP_275089.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit NP_275090.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu NP_275091.1 Catalyzes the phosphorylation of UMP to UDP NP_275092.1 identified by similarity to GP:4838555; match to protein family HMM PF06255 NP_275108.1 identified by similarity to GP:4838555 NP_275112.1 identified by similarity to EGAD:106898; match to protein family HMM PF01343 NP_275113.1 identified by similarity to EGAD:103771 NP_275114.1 catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis NP_275117.1 identified by similarity to EGAD:39989; match to protein family HMM PF01298 NP_275118.1 involved in the import of serine and threonine coupled with the import of sodium NP_275119.1 identified by similarity to EGAD:24660; match to protein family HMM PF01103 NP_275120.1 identified by similarity to EGAD:29466; match to protein family HMM PF04357 NP_275121.1 identified by similarity to EGAD:108941; match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924 NP_275123.1 recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1 NP_275124.1 identified by similarity to EGAD:108195; match to protein family HMM PF01734 NP_275125.1 identified by similarity to EGAD:28593; match to protein family HMM PF07681 NP_275127.1 identified by similarity to EGAD:28591; match to protein family HMM PF05114 NP_275128.1 identified by similarity to EGAD:28581 NP_275129.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription NP_275133.1 identified by similarity to EGAD:9780; match to protein family HMM PF00665; match to protein family HMM TIGR01199 NP_275135.1 identified by similarity to GP:606216; match to protein family HMM PF01300 NP_275136.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis NP_275138.1 identified by similarity to EGAD:91869; match to protein family HMM PF01205 NP_275139.1 identified by similarity to EGAD:45711; match to protein family HMM PF00766 NP_275140.1 identified by similarity to EGAD:40692; match to protein family HMM PF01012 NP_275141.1 identified by similarity to EGAD:40648; match to protein family HMM PF01075; match to protein family HMM TIGR02193 NP_275142.1 identified by similarity to EGAD:140533; match to protein family HMM PF00857 NP_275143.1 identified by similarity to EGAD:21511; match to protein family HMM PF01980; match to protein family HMM TIGR00104 NP_275144.1 identified by similarity to EGAD:22254; match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 NP_275145.1 This protein performs the mismatch recognition step during the DNA repair process