-- dump date 20240506_001552 -- class Genbank::Contig -- table contig_comment -- id comment NC_019962.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP003372.1.REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov)REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov)REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaeaREFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: ItalyREFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: ChemoorganotrophREFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobeREFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGSREFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release)REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: YesREFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMPREFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish)REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples,REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, ItalyREFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fishREFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shapedREFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: HalophileREFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30xREFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/IlluminaREFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166 CDSs (with protein) :: 4,166REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166 CDSs (with protein) :: 4,166 Genes (RNA) :: 61REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166 CDSs (with protein) :: 4,166 Genes (RNA) :: 61 rRNAs :: 4, 3, 3 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166 CDSs (with protein) :: 4,166 Genes (RNA) :: 61 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166 CDSs (with protein) :: 4,166 Genes (RNA) :: 61 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 49REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166 CDSs (with protein) :: 4,166 Genes (RNA) :: 61 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 2REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166 CDSs (with protein) :: 4,166 Genes (RNA) :: 61 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 2 Pseudo Genes (total) :: 142REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166 CDSs (with protein) :: 4,166 Genes (RNA) :: 61 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 2 Pseudo Genes (total) :: 142 CDSs (without protein) :: 142REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166 CDSs (with protein) :: 4,166 Genes (RNA) :: 61 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 2 Pseudo Genes (total) :: 142 CDSs (without protein) :: 142 Pseudo Genes (ambiguous residues) :: 0 of 142REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166 CDSs (with protein) :: 4,166 Genes (RNA) :: 61 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 2 Pseudo Genes (total) :: 142 CDSs (without protein) :: 142 Pseudo Genes (ambiguous residues) :: 0 of 142 Pseudo Genes (frameshifted) :: 50 of 142REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166 CDSs (with protein) :: 4,166 Genes (RNA) :: 61 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 2 Pseudo Genes (total) :: 142 CDSs (without protein) :: 142 Pseudo Genes (ambiguous residues) :: 0 of 142 Pseudo Genes (frameshifted) :: 50 of 142 Pseudo Genes (incomplete) :: 102 of 142REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166 CDSs (with protein) :: 4,166 Genes (RNA) :: 61 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 2 Pseudo Genes (total) :: 142 CDSs (without protein) :: 142 Pseudo Genes (ambiguous residues) :: 0 of 142 Pseudo Genes (frameshifted) :: 50 of 142 Pseudo Genes (incomplete) :: 102 of 142 Pseudo Genes (internal stop) :: 21 of 142REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166 CDSs (with protein) :: 4,166 Genes (RNA) :: 61 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 2 Pseudo Genes (total) :: 142 CDSs (without protein) :: 142 Pseudo Genes (ambiguous residues) :: 0 of 142 Pseudo Genes (frameshifted) :: 50 of 142 Pseudo Genes (incomplete) :: 102 of 142 Pseudo Genes (internal stop) :: 21 of 142 Pseudo Genes (multiple problems) :: 25 of 142REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166 CDSs (with protein) :: 4,166 Genes (RNA) :: 61 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 2 Pseudo Genes (total) :: 142 CDSs (without protein) :: 142 Pseudo Genes (ambiguous residues) :: 0 of 142 Pseudo Genes (frameshifted) :: 50 of 142 Pseudo Genes (incomplete) :: 102 of 142 Pseudo Genes (internal stop) :: 21 of 142 Pseudo Genes (multiple problems) :: 25 of 142 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP003372.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166 CDSs (with protein) :: 4,166 Genes (RNA) :: 61 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 2 Pseudo Genes (total) :: 142 CDSs (without protein) :: 142 Pseudo Genes (ambiguous residues) :: 0 of 142 Pseudo Genes (frameshifted) :: 50 of 142 Pseudo Genes (incomplete) :: 102 of 142 Pseudo Genes (internal stop) :: 21 of 142 Pseudo Genes (multiple problems) :: 25 of 142 ##Genome-Annotation-Data-END## COMPLETENESS: full length. NC_019967.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP003373.1.REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov)REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov)REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaeaREFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: ItalyREFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: ChemoorganotrophREFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobeREFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGSREFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release)REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: YesREFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMPREFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish)REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples,REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, ItalyREFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fishREFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shapedREFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: HalophileREFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30xREFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/IlluminaREFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166 CDSs (with protein) :: 4,166REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166 CDSs (with protein) :: 4,166 Genes (RNA) :: 61REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166 CDSs (with protein) :: 4,166 Genes (RNA) :: 61 rRNAs :: 4, 3, 3 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166 CDSs (with protein) :: 4,166 Genes (RNA) :: 61 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166 CDSs (with protein) :: 4,166 Genes (RNA) :: 61 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 49REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166 CDSs (with protein) :: 4,166 Genes (RNA) :: 61 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 2REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166 CDSs (with protein) :: 4,166 Genes (RNA) :: 61 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 2 Pseudo Genes (total) :: 142REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166 CDSs (with protein) :: 4,166 Genes (RNA) :: 61 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 2 Pseudo Genes (total) :: 142 CDSs (without protein) :: 142REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166 CDSs (with protein) :: 4,166 Genes (RNA) :: 61 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 2 Pseudo Genes (total) :: 142 CDSs (without protein) :: 142 Pseudo Genes (ambiguous residues) :: 0 of 142REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166 CDSs (with protein) :: 4,166 Genes (RNA) :: 61 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 2 Pseudo Genes (total) :: 142 CDSs (without protein) :: 142 Pseudo Genes (ambiguous residues) :: 0 of 142 Pseudo Genes (frameshifted) :: 50 of 142REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166 CDSs (with protein) :: 4,166 Genes (RNA) :: 61 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 2 Pseudo Genes (total) :: 142 CDSs (without protein) :: 142 Pseudo Genes (ambiguous residues) :: 0 of 142 Pseudo Genes (frameshifted) :: 50 of 142 Pseudo Genes (incomplete) :: 102 of 142REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166 CDSs (with protein) :: 4,166 Genes (RNA) :: 61 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 2 Pseudo Genes (total) :: 142 CDSs (without protein) :: 142 Pseudo Genes (ambiguous residues) :: 0 of 142 Pseudo Genes (frameshifted) :: 50 of 142 Pseudo Genes (incomplete) :: 102 of 142 Pseudo Genes (internal stop) :: 21 of 142REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166 CDSs (with protein) :: 4,166 Genes (RNA) :: 61 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 2 Pseudo Genes (total) :: 142 CDSs (without protein) :: 142 Pseudo Genes (ambiguous residues) :: 0 of 142 Pseudo Genes (frameshifted) :: 50 of 142 Pseudo Genes (incomplete) :: 102 of 142 Pseudo Genes (internal stop) :: 21 of 142 Pseudo Genes (multiple problems) :: 25 of 142REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166 CDSs (with protein) :: 4,166 Genes (RNA) :: 61 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 2 Pseudo Genes (total) :: 142 CDSs (without protein) :: 142 Pseudo Genes (ambiguous residues) :: 0 of 142 Pseudo Genes (frameshifted) :: 50 of 142 Pseudo Genes (incomplete) :: 102 of 142 Pseudo Genes (internal stop) :: 21 of 142 Pseudo Genes (multiple problems) :: 25 of 142 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP003373.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166 CDSs (with protein) :: 4,166 Genes (RNA) :: 61 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 2 Pseudo Genes (total) :: 142 CDSs (without protein) :: 142 Pseudo Genes (ambiguous residues) :: 0 of 142 Pseudo Genes (frameshifted) :: 50 of 142 Pseudo Genes (incomplete) :: 102 of 142 Pseudo Genes (internal stop) :: 21 of 142 Pseudo Genes (multiple problems) :: 25 of 142 ##Genome-Annotation-Data-END## COMPLETENESS: full length. NC_019963.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP003374.1.REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov)REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov)REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaeaREFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: ItalyREFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: ChemoorganotrophREFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobeREFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGSREFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release)REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: YesREFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMPREFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish)REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples,REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, ItalyREFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fishREFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shapedREFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: HalophileREFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30xREFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/IlluminaREFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166 CDSs (with protein) :: 4,166REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166 CDSs (with protein) :: 4,166 Genes (RNA) :: 61REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166 CDSs (with protein) :: 4,166 Genes (RNA) :: 61 rRNAs :: 4, 3, 3 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166 CDSs (with protein) :: 4,166 Genes (RNA) :: 61 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166 CDSs (with protein) :: 4,166 Genes (RNA) :: 61 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 49REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166 CDSs (with protein) :: 4,166 Genes (RNA) :: 61 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 2REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166 CDSs (with protein) :: 4,166 Genes (RNA) :: 61 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 2 Pseudo Genes (total) :: 142REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166 CDSs (with protein) :: 4,166 Genes (RNA) :: 61 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 2 Pseudo Genes (total) :: 142 CDSs (without protein) :: 142REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166 CDSs (with protein) :: 4,166 Genes (RNA) :: 61 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 2 Pseudo Genes (total) :: 142 CDSs (without protein) :: 142 Pseudo Genes (ambiguous residues) :: 0 of 142REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166 CDSs (with protein) :: 4,166 Genes (RNA) :: 61 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 2 Pseudo Genes (total) :: 142 CDSs (without protein) :: 142 Pseudo Genes (ambiguous residues) :: 0 of 142 Pseudo Genes (frameshifted) :: 50 of 142REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166 CDSs (with protein) :: 4,166 Genes (RNA) :: 61 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 2 Pseudo Genes (total) :: 142 CDSs (without protein) :: 142 Pseudo Genes (ambiguous residues) :: 0 of 142 Pseudo Genes (frameshifted) :: 50 of 142 Pseudo Genes (incomplete) :: 102 of 142REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166 CDSs (with protein) :: 4,166 Genes (RNA) :: 61 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 2 Pseudo Genes (total) :: 142 CDSs (without protein) :: 142 Pseudo Genes (ambiguous residues) :: 0 of 142 Pseudo Genes (frameshifted) :: 50 of 142 Pseudo Genes (incomplete) :: 102 of 142 Pseudo Genes (internal stop) :: 21 of 142REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166 CDSs (with protein) :: 4,166 Genes (RNA) :: 61 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 2 Pseudo Genes (total) :: 142 CDSs (without protein) :: 142 Pseudo Genes (ambiguous residues) :: 0 of 142 Pseudo Genes (frameshifted) :: 50 of 142 Pseudo Genes (incomplete) :: 102 of 142 Pseudo Genes (internal stop) :: 21 of 142 Pseudo Genes (multiple problems) :: 25 of 142REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166 CDSs (with protein) :: 4,166 Genes (RNA) :: 61 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 2 Pseudo Genes (total) :: 142 CDSs (without protein) :: 142 Pseudo Genes (ambiguous residues) :: 0 of 142 Pseudo Genes (frameshifted) :: 50 of 142 Pseudo Genes (incomplete) :: 102 of 142 Pseudo Genes (internal stop) :: 21 of 142 Pseudo Genes (multiple problems) :: 25 of 142 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP003374.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091192 Source DNA available from Iain Anderson (IJAnderson@lbl.gov) Organism available from DSMZ: DSM 15624 Contacts: Iain Anderson (IJAnderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Natrinema pellirubrum DSM 15624 collection_date :: 1962 lat_lon :: 40.853 14.153 depth :: Missing alt_elev :: Missing country :: Italy environment :: Missing num_replicons :: 3 ref_biomaterial :: DSM 15624, JCM 10476, NCIMB 786 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Obligate aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05999 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Red heat in salted hides (spoiled fish) Isolation Comments :: isolated by M. Formisano for Univ. Naples, Italy Host Name :: fish Cell Shape :: Rod-shaped Temperature Range :: Mesophile Salinity :: Halophile pH :: 7.2 - 7.8 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000230735.2-RS_2024_04_26 Annotation Date :: 04/26/2024 01:22:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,308 Genes (coding) :: 4,166 CDSs (with protein) :: 4,166 Genes (RNA) :: 61 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 2 Pseudo Genes (total) :: 142 CDSs (without protein) :: 142 Pseudo Genes (ambiguous residues) :: 0 of 142 Pseudo Genes (frameshifted) :: 50 of 142 Pseudo Genes (incomplete) :: 102 of 142 Pseudo Genes (internal stop) :: 21 of 142 Pseudo Genes (multiple problems) :: 25 of 142 ##Genome-Annotation-Data-END## COMPLETENESS: full length.