-- dump date 20140619_154717 -- class Genbank::repeat_region -- table repeat_region_note -- id note 83332000001 101 bp Mycobacterial Interspersed Repetitive Unit,Class I. See Supply et al. (1997) Molecular Microbiology 26, 991-1003 83332000002 5 x 9 bp GTGGACCCG repeats 83332000003 (MTV030.15), len: 315 nt. Probable REP'-1 pseudogene fragment, similar to many Mycobacterium tuberculosis proteins inside REP13E12 elements e.g. Q50655|Z95390|MTCY13E12.20 (317 aa), FASTA scores; opt: 324 E(): 6.8e-17, 43.4% identity in 99 aa overlap, but no possible startsite. 83332000004 REP-2, len: 1503 nt. REP251, member of REP13E12 family. 83332000005 53 bp Mycobacterial Interspersed Repetitive Unit,Class III (see Supply et al., 1997) 83332000006 53 bp Mycobacterial Interspersed Repetitive Unit,Class II 83332000007 53 bp Mycobacterial Interspersed Repetitive Unit,Class II 83332000008 39 bp direct repeat 1,AGGTGAAGGCGGCGGATTCGGCGGAATCTGACGCCGGAG 83332000009 39 bp direct repeat 2,AGGTGAAGGCGGCGGATTCGGCGGAATCTGACGCCGGAG 83332000010 101 bp Mycobacterial Interspersed Repetitive Unit,class III 83332000011 3 copies of a 10 bp near-perfect direct repeat,ATTACTACCTATTACTACGTATTACTATCT 83332000012 77 bp Mycobacterial Interspersed Repetitive Unit,Class I (see Supply et al., 1997) 83332000013 77 bp Mycobacterial Interspersed Repetitive Unit,Class I (see Supply et al., 1997) 83332000014 77 bp Mycobacterial Interspersed Repetitive Unit,Class I (see Supply et al., 1997) 83332000015 51 bp Mycobacterial Interspersed Repetitive Unit,Class II 83332000016 58 bp Mycobacterial Interspersed Repetitive Unit,Class III 83332000017 123 bp imperfect direct repeat 2, 92/103 bp identical to first copy at 709425..709548, AGCCCCGGCTCGACGCGGCATAGGGTGGCCACCGTGGCCGAAGCGTTCCATGCGACCG TGCCGTGGCGAGGATCCCGGCCGAACATGGCCCATTGAACGAGGACGTCATCGCACGA CGCCTGC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000018 74 bp imperfect direct repeat 2, 64/73 bp identical to first copy at 706790..706863, CACAGCGGACACCACAAAGCCCGCCGCTGCCACCGGATCGTCGGAACGAAAATAGTCG TACCCGTGAGCCTCGC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000019 74 bp imperfect direct repeat 1, 64/73 bp identical to second copy at 703912..703985, CACATCGGACACGACGAAACCCGCCGCTGCCACCGGATCGTCGGAGCGGAAGTAGTCG TACCCGTCGGCCTCGC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000020 123 bp imperfect direct repeat 1, 92/103 bp identical to second copy at 701247..701369, AGCCTCGGCTGGCCGCGGCATAAGGTGGCCACCGTGGCCGAAGCGTTCGATGCGACCC AAGCCGTGGCGAGAATCCTGGCCGAACATGGCCCATTGAGCGAGGACGACATCGCACG ACGCCTGC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000021 79 bp imperfect direct repeat 1, 73/78 bp identical to second copy at 711624..711702, TAGGGTTCGGCGTTGTGACGGCGCCGACGCGGTGGACCCTGGCCGACGGACGTGAGCT GCTGTTCTTTTCGCTGCCCGG. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000022 79 bp imperfect direct repeat 2, 73/78 bp identical to first copy at 709585..709663, TAGGGTTCTGCGTTGTGACGGCGCCGACGCGGTGGACCCTGGCCGATGGCCGTGACCT GCTGTTCTTTTCGCTGCCCGG 83332000023 52 bp Mycobacterial Interspersed Repetitive Unit,Class II 83332000024 49 bp Mycobacterial Interspersed Repetitive Unit,Class II 83332000025 87 bp Mycobacterial Interspersed Repetitive Unit,Class III 83332000026 54 bp Mycobacterial Interspersed Repetitive Unit,Class II 83332000027 101 bp Mycobacterial Interspersed Repetitive Unit,Class I 83332000028 4 bp direct repeat: GAGG, at the right end of IS6110 83332000029 28 bp inverted repeat at the left end of IS6110,TGAACCGCCCCGGCATGTCCGGAGACTC 83332000030 28 bp inverted repeat at the right end of IS6110,TGAACCGCCCCGGTGAGTCCGGAGACTC 83332000031 4 bp direct repeat: GAGG, at the left end of IS6110 83332000032 53 bp Mycobacterial Interspersed Repetitive Unit,Class II 83332000033 53 bp Mycobacterial Interspersed Repetitive Unit,Class II 83332000034 55 bp Mycobacterial Interspersed Repetitive Unit,Class II 83332000035 15 bp inverted repeat, ATTCGGTGTAAGTGG, at the left end of IS1554 element 83332000036 15 bp inverted repeat, ATTCGGTGTAAGTGG, at the right end of IS1554 element 83332000037 16 bp inverted repeat, TTGAGTGTGTTTTAGT, at the left end of IS element IS1535 83332000038 16 bp inverted repeat, TTGAGTGTGTTTTAGT, at the right end of IS element IS1535 83332000039 18 bp inverted repeat at the left end of IS-LIKE element, CTAGGGCGTGTCTCCCAA. This region is a possible MT-complex-specific genomic island (See Becq et al.,2007). 83332000040 18 bp inverted repeat at the right end of a IS-LIKE element, CTAGGGCGTGTCTCCCAA. This region is a possible MT-complex-specific genomic island (See Becq et al.,2007). 83332000041 51 bp Mycobacterial Interspersed Repetitive Unit,Class II 83332000042 REP-3, len: 1325 nt. REP22G8, member of REP13E12 family. 83332000043 REP-4, len: 1348 nt. REP165, member of REP13E12 family. 83332000044 4 bp direct repeat, CTAG, generated by IS element on insertion. Proposed by Mariani et al. 1993. J. Gen. Microbiol., 139: 1767-1772. Note that as motif palindromic could be part of inverted repeat itself. 83332000045 17 bp Inverted repeat at the left end of putative IS-LIKE-2 element : GGCGTGTCTCCCAAATT. Proposed by Mariani et al. 1993. J. Gen. Microbiol. 139: 1767-1772. 83332000046 17 bp Inverted repeat at the right end of putative IS-LIKE-2 element :GGCGTGTCTCCCAATTT. Proposed by Mariani et al. 1993. J. Gen. Microbiol. 139: 1767-1772 83332000047 4 bp direct repeat, CTAG generated by IS element on insertion. Proposed by Mariani et al. 1993. J. Gen. Microbiol. 139: 1767-1772. Note that as motif palindromic could be part of inverted repeat itself. 83332000048 62 bp direct repeat copy 1, GGCCTAGCCCCGGCGACGATGCCGGGTCGCGGGATGCGGCCCGTTGAGGAGCGGGGCA ATCT 83332000049 62 bp direct repeat copy 2, GGCCTAGCCCCGGCGACGATGCCGGGTCGCGGGATGCGGCCCGTTGAGGAGCGGGGCA ATCT 83332000050 62 bp direct repeat partial copy 3 (43/62 bp),GGCCTAGCCCCGGCGACGATGCCGGGTCGCGGGATGGGGCCCG 83332000051 43 bp Mycobacterial Interspersed Repetitive Unit,Class III 83332000052 52 bp Mycobacterial Interspersed Repetitive Unit,Class III 83332000053 53 bp Mycobacterial Interspersed Repetitive Unit,Class II 83332000054 19 bp inverted repeat, GCAGACGCAAAAGCCCCCA, at the left end of IS1557 83332000055 19 bp inverted repeat, GCAGACGCGAAAGCCCCCA, at the right end of IS1557. Single base difference at 3-end. 83332000056 51 bp Mycobacterial Interspersed Repetitive Unit,Class II 83332000057 3 bp direct repeat, CGG, at 3' end of IS6110 target sequence 83332000058 3 bp direct repeat, CGG, at 5' end of IS6110 target sequence 83332000059 21 bp imperfect direct repeat 5,GGCGCACCGGTACCGGTACCC 83332000060 21 bp imperfect direct repeat 4,GGCGGACCGGTACCGATACCG 83332000061 21 bp imperfect direct repeat 3,GGCGCACCGGTACCAATCCCC 83332000062 21 bp imperfect direct repeat 2,GGCGCACCGGTACCGATACCG 83332000063 21 bp imperfect direct repeat 1,GGCGCACCGGTACCAATCCCT 83332000064 53 bp Mycobacterial Interspersed Repetitive Unit,Class II 83332000065 1260 bp imperfect direct repeat 2, first copy at 1637133..1638392 83332000066 1260 bp imperfect direct repeat 1, second copy at 1633531..1634790 83332000067 53 bp Mycobacterial Interspersed Repetitive Unit,Class II 83332000068 51 bp Mycobacterial Interspersed Repetitive Unit,Class II 83332000069 12 bp direct repeat 1, ccacggccaacc, flanking phage-like element, second site at 1788514..1788525. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000070 89 bp direct repeat 2, first copy at 1780485..1780573, GGGTTGCGTTGTCGATTCGTTTGAGCCGCCGGTAGGTGCCGGCGGAGATGCCGAGGGC TG CGCCGATAGCAGTGTCTGTTTTCGTCGAA. This region is a possible MT-complex-specific genomic island (See Becq et al.,2007). 83332000071 89 bp direct repeat 1, second copy at 1779959..1780047, GGGTTGCGTTGTCGATTCGTTTGAGCCGCCGGTAGGTGCCGGCGGAGATGCCGAGGGC TG CGCCGATAGCAGTGTCTGTTTTCGTCGAA. Many repeats, both direct and inverted, in this region. This region is a possible MT-complex-specific genomic island (See Becq et al.,2007). 83332000072 REP-5, len: 1298 nt. REP336, member of REP13E12 family. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000073 12 bp direct repeat 2, ccacggccaacc, flanking phage-like element, first site at 1779266..1779277. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000074 52 bp Mycobacterial Interspersed Repetitive Unit,Class II 83332000075 56 bp direct repeat 1, AGTCGGGTGACGATGCGGGCCGGTGTGGTCCGAGGAGGAGCCCGACAATTTAAGCT 83332000076 56 bp direct repeat 2, AGTCGGGTGACGATGCGGGCCGGTGTGGTCCGAGGAGGAGCCCGACAATTTAAGCT 83332000077 REP-6, len: 1372 nt. REPI125, member of REP13E12 family. 83332000078 53 bp Mycobacterial Interspersed Repetitive Unit,Class II 83332000079 53 bp Mycobacterial Interspersed Repetitive Unit,Class II 83332000080 78 bp imperfect direct repeat 6, CGGCGCCTTCAGCCTGCCCGGGTTGACGTTGCCGTCGTTGAACATCCCGGCCGCCACC ACACCCGCCAACATCACCGT 83332000081 78 bp imperfect direct repeat 5, CGGCGCCTTCAGCCTGCCCGGGTTGACGTTGCCGTCGTTGAACATCCCGGCCGCCACC ACACCAGCCAACATCACCGT 83332000082 78 bp imperfect direct repeat 4, CGGCGCCTTCAGCCTGCCCGGGTTGACGTTGCCGTCGTTGAACATCCCGGCCGCCACC ACACCAGCCAACATCACCGT 83332000083 78 bp imperfect direct repeat 3, GGGTGCCTTCAGCCTGCCCGGGTTGACGTTGCCGTCGTTGAACATCCCGGCCGCCACC ACACCAGCCAACATCACCGT 83332000084 78 bp imperfect direct repeat 2, CGGCGCCTTCAGCCTGCCCGGGTTGACGTTGCCGTCGTTGAACATCCCGGCCGCCACC ACACCAGCCAACATCACCGT 83332000085 78 bp imperfect direct repeat 1, TCCCGCCTTCAGTCTGCCGGCAATAACGCTGCCGTCGCTGAACATCCCGGCCGCCACC ACACCGGCCAACATCACCGT 83332000086 28 bp inverted repeat at the left end of IS6110,TGAACCGCCCCGGTGAGTCCGGAGACTC. 83332000087 28 bp inverted repeat at the right end of IS6110,TGAACCGCCCCGGCATGTCCGGAGACTC 83332000088 28 bp inverted repeat at the left end of IS6110,TGAACCGCCCCGGCATGTCCGGAGACTC 83332000089 28 bp inverted repeat at the right end of IS6110,TGAACCGCCCCGGTGAGTCCGGAGACTC 83332000090 14 bp Inverted repeat at the left end of ISB9',ATCACCCCGCAAAG 83332000091 14 bp Inverted repeat at the right end of ISB9,ATCACCCCGGCAAG 83332000092 58 bp Mycobacterial Interspersed Repetitive Unit,Class III 83332000093 58 bp Mycobacterial Interspersed Repetitive Unit,Class III 83332000094 69 bp imperfect direct repeat 3, TTAATCCGTTTGGGTTGAATGTTCCGTTGAGCGGGGGCACGAGCCCGGTTACGATCCC CGGCTTCACCAT 83332000095 69 bp imperfect direct repeat 2, TTAATCCGTTTGGGTTGAATGTTCCGTTGAGCGGGGGCACGAGCCCGGTTACGATCCC TGGTTTCGCGA 83332000096 69 bp imperfect direct repeat 1, TTAATCCGTTCGGTTTGAATATTCCGCTGAGCGGTGCTACCAACGCTGTCACGATCCC TGGTTTCGCGA 83332000097 69 bp imperfect direct repeat 5, TCGGTCCGATTGTGGTGCCTGATATTACTATTCCTGGTATTCCGTTGAGCCTGAACGC GCTGGGTGGTG 83332000098 69 bp imperfect direct repeat 4, TCGGTCCGATTGTGGTGCCGGATATTACTATTCCTGGTATTCCGTTGAGCCTGAACGC GCTGGGTGGTG 83332000099 69 bp imperfect direct repeat 3, TCGGTCCGATTGTGGTGCCGGATATTACTATTCCTGGTATTCCGTTGAGCCTGAACGC GCTGGGTGGTG 83332000100 69 bp imperfect direct repeat 2, TCGGTCCGATTGTGGTGCCGGATATTACTATTCCTGGTATTCCGTTGAGCCTGAACGC GCTGGGTGGTG 83332000101 69 bp imperfect direct repeat 1, TCGGTCCGATTGTGGTGCCGGATATTACTATTCCTGGTATTCCGTTGAGCCTGAACGC GCTGGGTGGTG 83332000102 REP-7, len: 1362 nt. REP09F9, member of the REP13E12 family. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000103 79 bp Mycobacterial Interspersed Repetitive Unit,Class I 83332000104 28bp inverted repeat at the left end of IS6110,TGAACCGCCCCGGCATGTCCGGAGACTC 83332000105 28bp inverted repeat at the right end of IS6110,TGAACCGCCCCGGTGAGTCCGGAGACTC 83332000106 56 bp direct repeat 1, GCCCGCCGACGATGCGGGCCGCGCAGCGGGCCGCTGAGGAGGCGGGCATCAAGCAA 83332000107 56 bp direct repeat 2, GCCCGCCGACGATGCGGGCCGCGCAGCGGGCCGCTGAGGAGGCGGGCATCAAGCAA 83332000108 28 bp Inverted repeat at the left end of IS6110; GAGTCTCCGGACTCACCGGGGCGGTTCA 83332000109 28 bp Inverted repeat at the right end of IS6110,TGAACCGCCCCGGCATGTCCGGAGACTC 83332000110 58 bp Mycobacterial Interspersed Repetitive Unit,Class II I. Overlaps Rv2195 suggesting alternative GTG start at 2458 468 may be used 83332000111 18 bp inverted repeat between 3' end of MTCY427.04c and 5' end of MTCY427.03c 83332000112 58 bp inverted repeat near 3'end of MTCY427.28 83332000113 53 bp inverted repeat between 3' ends of MTCY427.29 and MT CY427.31c 83332000114 53 bp Mycobacterial Interspersed Repetitive Unit,Class II 83332000115 53 bp Mycobacterial Interspersed Repetitive Unit,Class II 83332000116 53 bp Mycobacterial Interspersed Repetitive Unit,Class II 83332000117 53 bp Mycobacterial Interspersed Repetitive Unit,Class II 83332000118 53 bp Mycobacterial Interspersed Repetitive Unit,Class II 83332000119 50 bp Mycobacterial Interspersed Repetitive Unit,Class II 83332000120 3 bp direct repeat, ccg, flanking IS6110 83332000121 28 bp inverted repeat at the left end of IS6110,TGAACCGCCCCGGCATGTCCGGAGACTC 83332000122 28 bp inverted repeat at the right end of IS6110,GAGTCTCCGGACTCACCGGGGCGGTTCA 83332000123 3 bp direct repeat, ccg, flanking IS6110 83332000124 28 bp Inverted repeat, TGAACCGCCCCGGCATGTCCGGAGACTC,at the left end of IS6110 83332000125 28 bp Inverted repeat, TGAACCGCCCCGGTGAGTCCGGAGACTC,at the right end of IS6110 83332000126 52 bp Mycobacterial Interspersed Repetitive Unit,Class II 83332000127 78 bp Mycobacterial Interspersed Repetitive Unit,Class I 83332000128 77 bp Mycobacterial Interspersed Repetitive Unit,Class I 83332000129 13 bp inverted repeat, GCAGTCG(C)AAAAG, at the left end of IS1558 83332000130 13 bp inverted repeat, GCAGTCG(T)AAAAG, at the right end of IS1558 83332000131 300 bp direct repeat copy 1 83332000132 300 bp direct repeat copy 2 83332000133 29 bp Inverted repeat at the left end of IS6110,GTGAACCGCCCCGGTGAGTCCGGAGACTC 83332000134 29 bp Inverted repeat at the right end of IS6110,GTGAACCGCCCCGGCATGTCCGGAGACTC 83332000135 248 bp direct repeat 2 83332000136 258 bp direct repeat 2. This region is a possible MT-complex-specific genomic island (See Becq et al.,2007). 83332000137 3 bp direct repeat: TCG at 5'-end of IS6110 83332000138 28 bp inverted repeat: TGAACCGCCCCGGCATGTCCGGAGACTC at the left end of IS6110 83332000139 28 bp inverted repeat, TGAACCGCCCCGGTGAGTCCGGAGACTC,at the right end of IS6110. 83332000140 3 bp direct repeat: TCG at 3'-end of IS6110 83332000141 15 bp Inverted repeat at the left end of IS1081:TCGCGTGATCCTTCG, right end copy is missing 83332000142 51 bp Mycobacterial Interspersed Repetitive Unit,Class II 83332000143 51 bp Mycobacterial Interspersed Repetitive Unit,Class II 83332000144 51 bp Mycobacterial Interspersed Repetitive Unit,Class II 83332000145 51 bp Mycobacterial Interspersed Repetitive Unit,Class II 83332000146 51 bp Mycobacterial Interspersed Repetitive Unit,Class II 83332000147 51 bp Mycobacterial Interspersed Repetitive Unit,Class II 83332000148 51 bp Mycobacterial Interspersed Repetitive Unit,Class I 83332000149 51 bp Mycobacterial Interspersed Repetitive Unit,Class III 83332000150 4392 bp direct repeat region. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000151 36 bp direct repeat, 36 out of 36 bp identical to sequence GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000152 36 bp direct repeat, 35 out of 36 bp identical to sequence GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000153 36 bp direct repeat, 35 out of 36 bp identical to sequence GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000154 36 bp direct repeat, 36 out of 36 bp identical to sequence GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000155 36 bp direct repeat, 35 out of 36 bp identical to sequence GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000156 36 bp direct repeat, 36 out of 36 bp identical to sequence GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000157 36 bp direct repeat, 36 out of 36 bp identical to sequence GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000158 36 bp direct repeat, 36 out of 36 bp identical to sequence GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000159 36 bp direct repeat, 36 out of 36 bp identical to sequence GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000160 36 bp direct repeat, 36 out of 36 bp identical to sequence GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000161 36 bp direct repeat, 36 out of 36 bp identical to sequence GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000162 36 bp direct repeat, 36 out of 36 bp identical to sequence GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000163 36 bp direct repeat, 36 out of 36 bp identical to sequence GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000164 36 bp direct repeat, 36 out of 36 bp identical to sequence GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000165 36 bp direct repeat, 36 out of 36 bp identical to sequence GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000166 36 bp direct repeat, 36 out of 36 bp identical to sequence GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000167 36 bp direct repeat, 36 out of 36 bp identical to sequence GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000168 36 bp direct repeat, 36 out of 36 bp identical to sequence GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000169 20 bp partial direct repeat, CCCCGAGAGGGGACGGAAAC,of sequence GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000170 16 bp partial direct repeat, GTCGTCAGACCCAAAA, of sequence GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000171 36 bp direct repeat, 36 out of 36 bp identical to sequence GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000172 36 bp direct repeat, 36 out of 36 bp identical to sequence GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000173 36 bp direct repeat, 36 out of 36 bp identical to sequence GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000174 36 bp direct repeat, 36 out of 36 bp identical to sequence GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000175 36 bp direct repeat, 36 out of 36 bp identical to sequence GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000176 36 bp direct repeat, 36 out of 36 bp identical to sequence GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000177 36 bp direct repeat, 32 out of 36 bp identical to sequence GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000178 36 bp direct repeat, 36 out of 36 bp identical to sequence GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000179 36 bp direct repeat, 36 out of 36 bp identical to sequence GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000180 36 bp direct repeat, 36 out of 36 bp identical to sequence GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000181 36 bp direct repeat, 36 out of 36 bp identical to sequence GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000182 36 bp direct repeat, 36 out of 36 bp identical to sequence GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000183 36 bp direct repeat, 36 out of 36 bp identical to sequence GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000184 36 bp direct repeat, 36 out of 36 bp identical to sequence GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000185 36 bp direct repeat, 36 out of 36 bp identical to sequence GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000186 36 bp direct repeat, 36 out of 36 bp identical to sequence GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000187 36 bp direct repeat, 36 out of 36 bp identical to sequence GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000188 36 bp direct repeat, 36 out of 36 bp identical to sequence GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000189 36 bp direct repeat, 36 out of 36 bp identical to sequence GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000190 36 bp direct repeat, 36 out of 36 bp identical to sequence GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000191 36 bp direct repeat, 36 out of 36 bp identical to sequence GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000192 36 bp direct repeat, 36 out of 36 bp identical to sequence GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000193 36 bp direct repeat, 36 out of 36 bp identical to sequence GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000194 54 bp direct repeat 4,GGTGGCGACCCGCGGCGCCCGGTCCCCGCGCTTGCGATCGCCACTAGGCTTGGC 83332000195 54 bp direct repeat 3,GGTGGCGACCCGCGGCGCCCGGTCCCCGCGCTTGCGATCGCCACTGGCCCTGAT 83332000196 54 bp direct repeat 2,GGTGGCGACCCGCGGCGCCCGGTCCCCGCGCTTGCGATCGCCACTGGCCCTGAT 83332000197 54 bp direct repeat 1,GGTGGCGACCCGCGGCGCCCGGTCCCCGCGCTTGCGATCGCCACTGGCCCTGAT 83332000198 62 bp Mycobacterial Interspersed Repetitive Unit,Class III 83332000199 51 bp direct repeat 1,GTCCGATGGTGGCGACCCGCTGCGCCCGGCTTCGCCGCGCTTGCGATCGCC 83332000200 51 bp direct repeat 2,GTCCGATGGTGGCGACCCGCTGCGCCCGGCTTCGCCGCGCTTGCGATCGCC 83332000201 (41 bp) part of 51 bp direct repeat 3,GGCGACCCGCTGCGCCCGGCTTCGCCGCGCTTGCGATCGCC 83332000202 (43 bp) part of 51 bp direct repeat,GTGTCGACCCGCTGCGCCCGGCTTCGCCGTGCTTGCGATCGCC. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000203 53 bp Mycobacterial Interspersed Repetitive Unit,Class II 83332000204 53 bp Mycobacterial Interspersed Repetitive Unit,Class II 83332000205 53 bp Mycobacterial Interspersed Repetitive Unit,Class II 83332000206 55 bp Mycobacterial Interspersed Repetitive Unit,Class III 83332000207 101 bp Mycobacterial Interspersed Repetitive Unit,Class III 83332000208 98 bp Mycobacterial Interspersed Repetitive Unit,Class III 83332000209 6 bp inverted repeat at the left end of IS1538,TGAGTG 83332000210 6 bp inverted repeat at the right end of IS1538,TGAGTG. 83332000211 15 bp Inverted repeat at left end of IS1081:TCGCGTGATCCTTCG 83332000212 15 bp Inverted repeat at the right end of IS1081:TCGCGTGATCCTTCG 83332000213 15 bp inverted repeat at left end of IS1081: TCGCGTGATCCTTCG. This region is a possible MT-complex-specific genomic island (See Becq et al.,2007). 83332000214 15 bp inverted repeat at right end of IS1081: TCGCGTGATCCTTCG. This region is a possible MT-complex-specific genomic island (See Becq et al.,2007). 83332000215 3 bp direct repeat, cga, at 5'-end of IS6110. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000216 28 bp inverted repeat at left end of IS6110,TGAACCGCCCCGGCATGTCCGGAGACTC. This region is a possible MT-complex-specific genomic island (See Becq et al.,2007). 83332000217 28 bp inverted repeat at right end of IS6110,TGAACCGCCCCGGTGAGTCCGGAGACTC. This region is a possible MT-complex-specific genomic island (See Becq et al.,2007). 83332000218 3 bp direct repeat, cga, at 3'-end of IS6110. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000219 3 bp direct repeat, att, at 5'-end of IS6110. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000220 28 bp inverted repeat at left end of IS6110,TGAACCGCCCCGGCATGTCCGGAGACTC. This region is a possible MT-complex-specific genomic island (See Becq et al.,2007). 83332000221 28 bp inverted repeat at right end of IS6110,TGAACCGCCCCGGTGAGTCCGGAGACTC. This region is a possible MT-complex-specific genomic island (See Becq et al.,2007). 83332000222 3 bp direct repeat, att, at 5'-end of IS6110. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000223 77 bp Mycobacterial Interspersed Repetitive Unit,Class I 83332000224 53 bp Mycobacterial Interspersed Repetitive Unit,Class II 83332000225 58 bp Mycobacterial Interspersed Repetitive Unit,Class III 83332000226 110 bp Mycobacterial Interspersed Repetitive Unit,Class III 83332000227 28 bp inverted repeat at left end of IS6110,TGAACCGCCCCGGCATGTCCGGAGACTC 83332000228 28 bp inverted repeat at right end of IS6110,TGAACCGCCCCGGTGAGTCCGGAGACTC 83332000229 207 bp imperfect direct repeat 1, 199/207 bp identical to second copy at 3769514..3769720 83332000230 109 bp imperfect direct repeat 1, 95/109 bp identical to second copy at 3769754..3769862 83332000231 98 bp imperfect direct repeat 1, 82/98 bp identical to the second copy at 3770994..3771091 83332000232 207 bp imperfect direct repeat 2, 199/207 bp identical to first copy at 3743198..3743404 83332000233 109 bp imperfect direct repeat 2, 95/109 bp identical to first copy at 3743402..3743510 83332000234 98 bp imperfect direct repeat 2, 82/98 bp identical to the first copy at 3743508..3743605 83332000235 28 bp inverted repeat at the left end of IS6110,TGAACCGCCCCGGTGAGTCCGGAGACTC 83332000236 28 bp inverted repeat at the right end of IS6110,TGAACCGCCCCGGCATGTCCGGAGACTC 83332000237 25 bp inverted repeat at the right end of putative IS1560, TAATTACTAGGACCTGAAAAAGTCG 83332000238 25 bp inverted repeat at the right end of putative IS1560, TAATTACTAAGACCTGAAAAAGTCG 83332000239 REP-8, len: 1372 nt. REP13E12, copies in Mycobacterium tuberculosis cosmids: cY336 from 14471 to 15821 (approx. 100% identity); cY251 from 11693 to 13109 (approx. 100% identity); cI65 from 14515 to 15905 (approx 75% identity); cI125 from 27240 to 28597 (approx. 65% Identity); cY22G8 from 13352 to 14689 (approx. 65% identity); and cY9F9 from 9019 to 10451 (approx. 65% identity); also nearly identical to EM_BA :MB35021 U35021 Mycobacterium bovis BCG DNA flanking deletion region 3 from 56 to 1466. This region is a possible MT-complex-specific genomic island (See Becq et al., 2007). 83332000240 28 bp inverted repeat at left end of IS6110 :TGAACCGCCCCGGCATGTCCGGAGACTC 83332000241 28 bp inverted repeat at right end of IS6110 :TGAACCGCCCCGGTGAGTCCGGAGACTC 83332000242 500 bp perfect direct repeat 2; second copy at 3950830..3951329. 83332000243 500 bp perfect direct repeat 1; second copy at 3945098..3945597. 83332000244 58 bp Mycobacterial Interspersed Repetitive Unit,Class III. 83332000245 18 bp direct repeat 2, GGGTTTGCGATCGCCACG 83332000246 (24 bp) part of 111 bp direct repeat unit 6,GTGGCGACCCGCTGCACCCGGCTC 83332000247 111 bp direct repeat unit 5, GTGGCGACCCGCTGCACCCGGCTCTGGGGTGATTGCCTGGCTCCTCCTCGGCCCGTTT TGCGGGCCGCATTGTCGCCAGGCGCGGGGTTTGCGATCGCCACGGGGCTGATG 83332000248 18 bp direct repeat 1, GGGTTTGCGATCGCCACG 83332000249 111 bp direct repeat unit 4, GTGGCGACCCGCTGCACCCGGCTCTGGGGTGATTGCCTGGCTCCTCCTCGGCCCGTTT TGCGGGCCGCATTGTCGCCAGGCGCGGGGTTTGCGATCGCCACGGGGCTGATG 83332000250 111 bp direct repeat unit 3, GTGGCGACCCGCTGCACCCGGCTCTGGGGTGATTGCCTGGCTCCTCCTCGGCCCGTTT TGCGGGCCGCATTGTCGCCAGGCGCGGGGTTTGCGATCGCCACGGGGCTGATG 83332000251 111 bp direct repeat unit 2, GTGGCGACCCGCTGCACCCGGCTCTGGGGTGATTGCCTGGCTCCTCCTCGGCCCGTTT TGCGGGCCGCATTGTCGCCAGGCGCGGGGTTTGCGATCGCCACGGGGCTGATG 83332000252 111 bp direct repeat unit 1, GTGGCGACCCGCTGCACCCGGCTCTGGGGTGATTGCCTGGCTCCTCCTCGGCCCGTTT TGCGGGCCGCATTGTCGCCAGGCGCGGGGTTTGCGATCGCCACGGGGCTGATG 83332000253 16 bp inverted repeat at the left end of putative IS element IS1534; GAAAATTGACCAGCTT. 83332000254 16 bp inverted repeat at the right end of putative IS element IS1534; GAAAATTGACCAGCTT. 83332000255 13 bp inverted repeat at the right end of putative IS element IS1553; GAGTTCGTCGGTG. 83332000256 13 bp inverted repeat at the left end of putative IS element IS1553; GAGATCGTCGGTG. 83332000257 125 bp Mycobacterial Interspersed Repetitive Unit,Class III. 83332000258 53 bp Mycobacterial Interspersed Repetitive Unit,Class II 83332000259 53 bp Mycobacterial Interspersed Repetitive Unit,Class II 83332000260 51 bp imperfect direct repeat 1,GAACCGGCCGCATCTAAACCACCCACACCCCCCATGCCCATCGCCGGACCC 83332000261 51 bp imperfect direct repeat 2,GAACCGGCCCCACCCAAACCACCCACACCCCCCATGCCCATCGCCGGACCC 83332000262 51 bp imperfect direct repeat 3,GAACCGGCCCCACCCAAACCACCCACACCTCCGATGCCCATCGCCGGACCT