-- dump date 20140619_151437 -- class Genbank::repeat_region -- table repeat_region_note -- id note 717522000001 REP-1, Equivalent from Mycobacterium tuberculosis strain H37Rv 717522000002 REP-2, Equivalent from Mycobacterium tuberculosis strain H37Rv. REP251, member of REP13E12 family 717522000003 15 bp perfect inverted repeat, IRR, flanking IS element IS1554 717522000004 15 bp perfect inverted repeat, IRL, flanking IS element IS1554 717522000005 49 bp imperfect inverted repeat, IRL, flanking IS element IS1535 717522000006 49 bp imperfect inverted repeat, IRR, flanking IS element IS1535 717522000007 17 bp perfect inverted repeat, IRL, flanking IS element IS1535 717522000008 17 bp perfect inverted repeat, IRR, flanking IS element IS1535 717522000009 IS like-1, Equivalent from Mycobacterium tuberculosis strain H37Rv. Insertion sequence, IS like-2, region similar to cosmid y348 717522000010 IS like-2, Equivalent from Mycobacterium tuberculosis strain H37Rv. IS element IS like-2 717522000011 4 bp direct repeat, generated by IS element on insertion. Proposed by Mariani et al. 1993. J. Gen.Microbiol. 139:1767-1772. Note that as the motif is palindromic it could be part of the inverted repeat itself 717522000012 17 bp imperfect inverted repeat,IRR, flanking putative IS element. Proposed by Mariani et al. 1993. J. Gen. Microbiol. 139: 1767-1772 717522000013 17 bp imperfect inverted repeat, IRL, flanking putative IS element. Proposed by Mariani et al. 1993. J. Gen. Microbiol. 139: 1767-1772 717522000014 4 bp direct repeat, generated by IS elementon insertion. Proposed by Mariani et al. 1993. J. Gen.Microbiol. 139:1767-1772. Note that as motif palindromic could be part of inverted repeat itself 717522000015 8 bp direct repeat, flanking IS element IS1081 717522000016 15 bp perfect inverted repeat, IRR, flanking IS element IS1081 717522000017 15 bp perfect inverted repeat, IRL, flanking IS element IS1081 717522000018 8 bp direct repeat, flanking IS element IS1081 717522000019 20 bp imperfect inverted repeat, IRR, flanking IS element IS1557 717522000020 20 bp imperfect inverted repeat, IRL, flanking IS element IS1557 717522000021 REP-5, Equivalent from Mycobacterium tuberculosis strain H37Rv. REP336, member of REP13E12 family. 717522000022 REP-6, Equivalent from Mycobacterium tuberculosis strain H37RV. REPI125, member of REP13E12 family. 717522000023 14 bp imperfect inverted repeat, IRR, flanking IS element ISB9'. 717522000024 14 bp imperfect inverted repeat, IRL, flanking IS element ISB9'. 717522000025 REP-7, nt 1449. Equivalent from Mycobacterium tuberculosis strain H37Rv. Member of REP13E12 family, copy REP-7 717522000026 Variable number tandem repeat region (VNTR), Contains 5 copies of 57 bp repeat, there are also 5 copies in Mycobacterium bovis but only 3 copies in Mycobacterium tuberculosis H37Rv 717522000027 13 bp imperfect inverted repeat, IRR, flanking IS element IS1558 717522000028 13 bp imperfect inverted repeat, IRL, flanking IS element IS1558 717522000029 15 bp perfect inverted repeat, IRR, flanking IS element IS1081 717522000030 15 bp perfect inverted repeat, IRL, flanking IS element IS1081 717522000031 4921 bp DR, direct repeat region composed of 49 repeat_units of 36 bases pairs, one of them has been interrupted by the insertion of an IS6110 elements 717522000051 3' part direct repeat, CCCCGAGAGGGGACGGAAAC, of sequence GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC 717522000052 3 bp direct repeat, GGG, flanking IS element IS6110 717522000053 28 bp perfect inverted repeat, IRR, TGAACCGCCCCGGCAATGTCCGGAGACTC, flanking IS element IS6110 717522000054 28 bp perfect inverted repeat, IRL, TGAACCGCCCCGGCAATGTCCGGAGACTC, flanking IS element IS6110 717522000055 3 bp direct repeat, GGG, flanking IS element IS6110 717522000056 5' part direct repeat, GTCGTCAGACCCAAAA, of sequence GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC 717522000086 5 bp direct repeat, CCGTT, flanking IS element IS1533 717522000087 54 bp imperfect inverted repeat, IRL, flanking IS element IS1533 717522000088 54 bp imperfect inverted repeat, IRR, flanking IS element IS1533 717522000089 5 bp direct repeat, CCGTT, flanking IS element IS1533 717522000090 6 bp perfect inverted repeat, IRR, TGAGTG, flanking IS element IS1538 717522000091 6 bp perfect inverted repeat, IRR, TGAGTG, flanking IS element IS1538 717522000092 8 bp direct repeat, CCAGTCGC, flanking IS element IS1081 717522000093 15 bp perfect inverted repeat, IRR, TCGCGTGATCCTTCG, flanking IS element IS1081 717522000094 15 bp perfect inverted repeat, IRR, TCGCGTGATCCTTCG, flanking IS element IS1081 717522000095 8 bp direct repeat, CCAGTCGC, flanking IS element IS1081 717522000096 8 bp direct repeat, AGGAGGAG, flanking IS element IS1081 717522000097 15 bp perfect inverted repeat, IRL, TCGCGTGATCCTTCG, flanking IS element IS1081 717522000098 15 bp perfect inverted repeat, IRL, TCGCGTGATCCTTCG, flanking IS element IS1081 717522000099 8 bp direct repeat, AGGAGGAG, flanking IS element IS1081 717522000100 DU2, len: 36163 bases. Duplicated Region DU2. In Mycobacterium bovis BCG Pasteur and BCG Mexico, a 99152 bp region corresponding to Mycobacterium tuberculosis H37Rv has been duplicated as tandem repeat 717522000101 2 bp direct repeat, GT, flanking IS element IS1560 717522000102 25 bp inverted repeat, IRL, TAATTACTAGGACCTGAAAAAGTCG, flanking IS element IS1560 717522000103 25 bp inverted repeat, IRR, TAATTACTAAGACCTGAAAAAGTCG, flanking IS element IS1560 717522000104 2 bp direct repeat, GT, flanking IS element IS1560 717522000105 REP-8, Equivalent from Mycobacterium tuberculosis strain H37Rv 717522000106 49 bp imperfect inverted repeat, IRL, CGGCAACTGAATACTGACCAGAGCGCGGCAACTGAAAATTGACCAGCTT, flanking IS element IS1534 717522000107 49 bp imperfect inverted repeat, IRR, CGGCAACCGAAAACTGATCAGGTGTCGGCAATCGAAAATTGACCAGCTT, flanking IS element IS1534 717522000108 13 bp imperfect inverted repeat, IRR, GAGTTCGTCGGTG, flanking IS element IS1553 717522000109 13 bp imperfect inverted repeat, IRL, GAGATCGTCGGTG, flanking IS element IS1553 717522000110 direct repeat, 57bp sequence: tcgcgagcccggcgcagccgggcgaagcgggtcggcacgcatcggaccccgtgacga 717522000111 direct repeat, 57bp sequence: tcgcgagcccggcgcagccgggcgaagcgggtcggcacgcatcggaccccgtgacga 717522000112 direct repeat, 57bp sequence: tcgcgagcccggcgcagccgggcgaagcgggtcggcacgcatcggaccccgtgacga 717522000113 direct repeat, 57bp sequence: tcgcgagcccggcgcagccgggcgaagcgggtcggcacgcatcggaccccgtgacga 717522000114 direct repeat, 57bp sequence: tcgcgagcccggcgcagccgggcgaagcgggtcggcacgcatcggaccccgtgacga 717522000115 direct repeat, 57bp sequence: tcgcgagcccggcgcagccgggcgaagcgggtcggcacgcatcggaccccgtgacga 717522000116 direct repeat, 57bp sequence: tcgcgagcccggcgcagccgggcgaagcgggtcggcacgcatcggaccccgtgacga 717522000117 direct repeat, 57bp sequence: tcgcgagcccggcgcagccgggcgaagcgggtcggcacgcatcggaccccgtgacga 717522000118 direct repeat, 57bp sequence: tcgcgagcccggcgcagccgggcgaagcgggtcggcacgcatcggaccccgtgacga 717522000119 direct repeat, 57bp sequence: tcgcgagcccggcgcagccgggcgaagcgggtcggcacgcatcggaccccgtgacga 717522000120 direct repeat, 57bp sequence: tcgcgagcccggcgcagccgggcgaagcgggtcggcacgcatcggaccccgtgacga 717522000121 direct repeat, 57bp sequence: tcgcgagcccggcgcagccgggcgaagcgggtcggcacgcatcggaccccgtgacga 717522000122 Equivalent from Mycobacterium tuberculosis strain H37Rv; insertion sequence:IS1537