-- dump date 20240506_001243 -- class Genbank::Contig -- table contig_comment -- id comment NC_019977.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP003362.1.REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at theREFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ)REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaeaREFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, SedimentREFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: MethylotrophREFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobeREFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGSREFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release)REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: YesREFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMPREFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sedimentREFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwaterREFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen,REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The NetherlandsREFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shapedREFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: NonmotileREFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37CREFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram-REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30xREFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/IlluminaREFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,694REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,694 CDSs (total) :: 2,634REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,694 CDSs (total) :: 2,634 Genes (coding) :: 2,587REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,694 CDSs (total) :: 2,634 Genes (coding) :: 2,587 CDSs (with protein) :: 2,587REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,694 CDSs (total) :: 2,634 Genes (coding) :: 2,587 CDSs (with protein) :: 2,587 Genes (RNA) :: 60REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,694 CDSs (total) :: 2,634 Genes (coding) :: 2,587 CDSs (with protein) :: 2,587 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,694 CDSs (total) :: 2,634 Genes (coding) :: 2,587 CDSs (with protein) :: 2,587 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,694 CDSs (total) :: 2,634 Genes (coding) :: 2,587 CDSs (with protein) :: 2,587 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,694 CDSs (total) :: 2,634 Genes (coding) :: 2,587 CDSs (with protein) :: 2,587 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,694 CDSs (total) :: 2,634 Genes (coding) :: 2,587 CDSs (with protein) :: 2,587 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 47REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,694 CDSs (total) :: 2,634 Genes (coding) :: 2,587 CDSs (with protein) :: 2,587 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 47 CDSs (without protein) :: 47REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,694 CDSs (total) :: 2,634 Genes (coding) :: 2,587 CDSs (with protein) :: 2,587 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 47 CDSs (without protein) :: 47 Pseudo Genes (ambiguous residues) :: 0 of 47REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,694 CDSs (total) :: 2,634 Genes (coding) :: 2,587 CDSs (with protein) :: 2,587 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 47 CDSs (without protein) :: 47 Pseudo Genes (ambiguous residues) :: 0 of 47 Pseudo Genes (frameshifted) :: 19 of 47REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,694 CDSs (total) :: 2,634 Genes (coding) :: 2,587 CDSs (with protein) :: 2,587 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 47 CDSs (without protein) :: 47 Pseudo Genes (ambiguous residues) :: 0 of 47 Pseudo Genes (frameshifted) :: 19 of 47 Pseudo Genes (incomplete) :: 28 of 47REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,694 CDSs (total) :: 2,634 Genes (coding) :: 2,587 CDSs (with protein) :: 2,587 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 47 CDSs (without protein) :: 47 Pseudo Genes (ambiguous residues) :: 0 of 47 Pseudo Genes (frameshifted) :: 19 of 47 Pseudo Genes (incomplete) :: 28 of 47 Pseudo Genes (internal stop) :: 12 of 47REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,694 CDSs (total) :: 2,634 Genes (coding) :: 2,587 CDSs (with protein) :: 2,587 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 47 CDSs (without protein) :: 47 Pseudo Genes (ambiguous residues) :: 0 of 47 Pseudo Genes (frameshifted) :: 19 of 47 Pseudo Genes (incomplete) :: 28 of 47 Pseudo Genes (internal stop) :: 12 of 47 Pseudo Genes (multiple problems) :: 10 of 47REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,694 CDSs (total) :: 2,634 Genes (coding) :: 2,587 CDSs (with protein) :: 2,587 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 47 CDSs (without protein) :: 47 Pseudo Genes (ambiguous residues) :: 0 of 47 Pseudo Genes (frameshifted) :: 19 of 47 Pseudo Genes (incomplete) :: 28 of 47 Pseudo Genes (internal stop) :: 12 of 47 Pseudo Genes (multiple problems) :: 10 of 47 CRISPR Arrays :: 2REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,694 CDSs (total) :: 2,634 Genes (coding) :: 2,587 CDSs (with protein) :: 2,587 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 47 CDSs (without protein) :: 47 Pseudo Genes (ambiguous residues) :: 0 of 47 Pseudo Genes (frameshifted) :: 19 of 47 Pseudo Genes (incomplete) :: 28 of 47 Pseudo Genes (internal stop) :: 12 of 47 Pseudo Genes (multiple problems) :: 10 of 47 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP003362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,694 CDSs (total) :: 2,634 Genes (coding) :: 2,587 CDSs (with protein) :: 2,587 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 47 CDSs (without protein) :: 47 Pseudo Genes (ambiguous residues) :: 0 of 47 Pseudo Genes (frameshifted) :: 19 of 47 Pseudo Genes (incomplete) :: 28 of 47 Pseudo Genes (internal stop) :: 12 of 47 Pseudo Genes (multiple problems) :: 10 of 47 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## COMPLETENESS: full length. NC_019972.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP003363.1.REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at theREFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ)REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaeaREFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, SedimentREFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: MethylotrophREFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobeREFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGSREFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release)REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: YesREFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMPREFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sedimentREFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwaterREFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen,REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The NetherlandsREFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shapedREFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: NonmotileREFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37CREFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram-REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30xREFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/IlluminaREFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,694REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,694 CDSs (total) :: 2,634REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,694 CDSs (total) :: 2,634 Genes (coding) :: 2,587REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,694 CDSs (total) :: 2,634 Genes (coding) :: 2,587 CDSs (with protein) :: 2,587REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,694 CDSs (total) :: 2,634 Genes (coding) :: 2,587 CDSs (with protein) :: 2,587 Genes (RNA) :: 60REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,694 CDSs (total) :: 2,634 Genes (coding) :: 2,587 CDSs (with protein) :: 2,587 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,694 CDSs (total) :: 2,634 Genes (coding) :: 2,587 CDSs (with protein) :: 2,587 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,694 CDSs (total) :: 2,634 Genes (coding) :: 2,587 CDSs (with protein) :: 2,587 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,694 CDSs (total) :: 2,634 Genes (coding) :: 2,587 CDSs (with protein) :: 2,587 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,694 CDSs (total) :: 2,634 Genes (coding) :: 2,587 CDSs (with protein) :: 2,587 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 47REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,694 CDSs (total) :: 2,634 Genes (coding) :: 2,587 CDSs (with protein) :: 2,587 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 47 CDSs (without protein) :: 47REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,694 CDSs (total) :: 2,634 Genes (coding) :: 2,587 CDSs (with protein) :: 2,587 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 47 CDSs (without protein) :: 47 Pseudo Genes (ambiguous residues) :: 0 of 47REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,694 CDSs (total) :: 2,634 Genes (coding) :: 2,587 CDSs (with protein) :: 2,587 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 47 CDSs (without protein) :: 47 Pseudo Genes (ambiguous residues) :: 0 of 47 Pseudo Genes (frameshifted) :: 19 of 47REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,694 CDSs (total) :: 2,634 Genes (coding) :: 2,587 CDSs (with protein) :: 2,587 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 47 CDSs (without protein) :: 47 Pseudo Genes (ambiguous residues) :: 0 of 47 Pseudo Genes (frameshifted) :: 19 of 47 Pseudo Genes (incomplete) :: 28 of 47REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,694 CDSs (total) :: 2,634 Genes (coding) :: 2,587 CDSs (with protein) :: 2,587 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 47 CDSs (without protein) :: 47 Pseudo Genes (ambiguous residues) :: 0 of 47 Pseudo Genes (frameshifted) :: 19 of 47 Pseudo Genes (incomplete) :: 28 of 47 Pseudo Genes (internal stop) :: 12 of 47REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,694 CDSs (total) :: 2,634 Genes (coding) :: 2,587 CDSs (with protein) :: 2,587 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 47 CDSs (without protein) :: 47 Pseudo Genes (ambiguous residues) :: 0 of 47 Pseudo Genes (frameshifted) :: 19 of 47 Pseudo Genes (incomplete) :: 28 of 47 Pseudo Genes (internal stop) :: 12 of 47 Pseudo Genes (multiple problems) :: 10 of 47REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,694 CDSs (total) :: 2,634 Genes (coding) :: 2,587 CDSs (with protein) :: 2,587 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 47 CDSs (without protein) :: 47 Pseudo Genes (ambiguous residues) :: 0 of 47 Pseudo Genes (frameshifted) :: 19 of 47 Pseudo Genes (incomplete) :: 28 of 47 Pseudo Genes (internal stop) :: 12 of 47 Pseudo Genes (multiple problems) :: 10 of 47 CRISPR Arrays :: 2REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,694 CDSs (total) :: 2,634 Genes (coding) :: 2,587 CDSs (with protein) :: 2,587 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 47 CDSs (without protein) :: 47 Pseudo Genes (ambiguous residues) :: 0 of 47 Pseudo Genes (frameshifted) :: 19 of 47 Pseudo Genes (incomplete) :: 28 of 47 Pseudo Genes (internal stop) :: 12 of 47 Pseudo Genes (multiple problems) :: 10 of 47 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP003363.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Methanomethylovorans hollandica DSM 15978 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Fresh water, Sediment num_replicons :: 2 ref_biomaterial :: DSM 15978 biotic_relationship :: Free living trophic_level :: Methylotroph rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10427061 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02921 Type Strain :: Yes Greengenes ID :: 431 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The Netherlands Cell Shape :: Disc-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 6.5 - 7.0 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 00:59:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,694 CDSs (total) :: 2,634 Genes (coding) :: 2,587 CDSs (with protein) :: 2,587 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 52 ncRNAs :: 2 Pseudo Genes (total) :: 47 CDSs (without protein) :: 47 Pseudo Genes (ambiguous residues) :: 0 of 47 Pseudo Genes (frameshifted) :: 19 of 47 Pseudo Genes (incomplete) :: 28 of 47 Pseudo Genes (internal stop) :: 12 of 47 Pseudo Genes (multiple problems) :: 10 of 47 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## COMPLETENESS: full length.