-- dump date 20240506_001217 -- class Genbank::Contig -- table contig_comment -- id comment NC_014002.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP001994.1.REFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042REFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at theREFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ)REFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)REFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)REFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START##REFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219REFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68REFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918REFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007REFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMPREFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Anaerobic sediment from Great Salt Lake,REFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Anaerobic sediment from Great Salt Lake, USA"REFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Anaerobic sediment from Great Salt Lake, USA" Isolation Country :: USAREFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Anaerobic sediment from Great Salt Lake, USA" Isolation Country :: USA Latitude :: 41.177REFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Anaerobic sediment from Great Salt Lake, USA" Isolation Country :: USA Latitude :: 41.177 Longitude :: -112.502REFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Anaerobic sediment from Great Salt Lake, USA" Isolation Country :: USA Latitude :: 41.177 Longitude :: -112.502 Oxygen Requirement :: AnaerobeREFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Anaerobic sediment from Great Salt Lake, USA" Isolation Country :: USA Latitude :: 41.177 Longitude :: -112.502 Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shapedREFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Anaerobic sediment from Great Salt Lake, USA" Isolation Country :: USA Latitude :: 41.177 Longitude :: -112.502 Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: NonmotileREFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Anaerobic sediment from Great Salt Lake, USA" Isolation Country :: USA Latitude :: 41.177 Longitude :: -112.502 Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Anaerobic sediment from Great Salt Lake, USA" Isolation Country :: USA Latitude :: 41.177 Longitude :: -112.502 Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37CREFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Anaerobic sediment from Great Salt Lake, USA" Isolation Country :: USA Latitude :: 41.177 Longitude :: -112.502 Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: HalophileREFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Anaerobic sediment from Great Salt Lake, USA" Isolation Country :: USA Latitude :: 41.177 Longitude :: -112.502 Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 6.5 - 7.5REFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Anaerobic sediment from Great Salt Lake, USA" Isolation Country :: USA Latitude :: 41.177 Longitude :: -112.502 Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 6.5 - 7.5 Gram Staining :: gram-REFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Anaerobic sediment from Great Salt Lake, USA" Isolation Country :: USA Latitude :: 41.177 Longitude :: -112.502 Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 6.5 - 7.5 Gram Staining :: gram- Biotic Relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Anaerobic sediment from Great Salt Lake, USA" Isolation Country :: USA Latitude :: 41.177 Longitude :: -112.502 Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 6.5 - 7.5 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Anaerobic sediment from Great Salt Lake, USA" Isolation Country :: USA Latitude :: 41.177 Longitude :: -112.502 Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 6.5 - 7.5 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water, SedimentREFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Anaerobic sediment from Great Salt Lake, USA" Isolation Country :: USA Latitude :: 41.177 Longitude :: -112.502 Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 6.5 - 7.5 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water, Sediment Energy Source :: MethylotrophREFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Anaerobic sediment from Great Salt Lake, USA" Isolation Country :: USA Latitude :: 41.177 Longitude :: -112.502 Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 6.5 - 7.5 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water, Sediment Energy Source :: Methylotroph ##Metadata-END##REFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Anaerobic sediment from Great Salt Lake, USA" Isolation Country :: USA Latitude :: 41.177 Longitude :: -112.502 Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 6.5 - 7.5 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water, Sediment Energy Source :: Methylotroph ##Metadata-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Anaerobic sediment from Great Salt Lake, USA" Isolation Country :: USA Latitude :: 41.177 Longitude :: -112.502 Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 6.5 - 7.5 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water, Sediment Energy Source :: Methylotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Anaerobic sediment from Great Salt Lake, USA" Isolation Country :: USA Latitude :: 41.177 Longitude :: -112.502 Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 6.5 - 7.5 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water, Sediment Energy Source :: Methylotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:19:57REFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Anaerobic sediment from Great Salt Lake, USA" Isolation Country :: USA Latitude :: 41.177 Longitude :: -112.502 Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 6.5 - 7.5 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water, Sediment Energy Source :: Methylotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:19:57 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Anaerobic sediment from Great Salt Lake, USA" Isolation Country :: USA Latitude :: 41.177 Longitude :: -112.502 Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 6.5 - 7.5 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water, Sediment Energy Source :: Methylotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:19:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Anaerobic sediment from Great Salt Lake, USA" Isolation Country :: USA Latitude :: 41.177 Longitude :: -112.502 Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 6.5 - 7.5 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water, Sediment Energy Source :: Methylotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:19:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Anaerobic sediment from Great Salt Lake, USA" Isolation Country :: USA Latitude :: 41.177 Longitude :: -112.502 Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 6.5 - 7.5 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water, Sediment Energy Source :: Methylotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:19:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Anaerobic sediment from Great Salt Lake, USA" Isolation Country :: USA Latitude :: 41.177 Longitude :: -112.502 Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 6.5 - 7.5 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water, Sediment Energy Source :: Methylotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:19:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5REFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Anaerobic sediment from Great Salt Lake, USA" Isolation Country :: USA Latitude :: 41.177 Longitude :: -112.502 Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 6.5 - 7.5 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water, Sediment Energy Source :: Methylotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:19:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Anaerobic sediment from Great Salt Lake, USA" Isolation Country :: USA Latitude :: 41.177 Longitude :: -112.502 Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 6.5 - 7.5 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water, Sediment Energy Source :: Methylotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:19:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,077REFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Anaerobic sediment from Great Salt Lake, USA" Isolation Country :: USA Latitude :: 41.177 Longitude :: -112.502 Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 6.5 - 7.5 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water, Sediment Energy Source :: Methylotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:19:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,077 CDSs (total) :: 2,013REFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Anaerobic sediment from Great Salt Lake, USA" Isolation Country :: USA Latitude :: 41.177 Longitude :: -112.502 Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 6.5 - 7.5 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water, Sediment Energy Source :: Methylotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:19:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,077 CDSs (total) :: 2,013 Genes (coding) :: 1,992REFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Anaerobic sediment from Great Salt Lake, USA" Isolation Country :: USA Latitude :: 41.177 Longitude :: -112.502 Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 6.5 - 7.5 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water, Sediment Energy Source :: Methylotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:19:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,077 CDSs (total) :: 2,013 Genes (coding) :: 1,992 CDSs (with protein) :: 1,992REFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Anaerobic sediment from Great Salt Lake, USA" Isolation Country :: USA Latitude :: 41.177 Longitude :: -112.502 Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 6.5 - 7.5 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water, Sediment Energy Source :: Methylotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:19:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,077 CDSs (total) :: 2,013 Genes (coding) :: 1,992 CDSs (with protein) :: 1,992 Genes (RNA) :: 64REFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Anaerobic sediment from Great Salt Lake, USA" Isolation Country :: USA Latitude :: 41.177 Longitude :: -112.502 Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 6.5 - 7.5 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water, Sediment Energy Source :: Methylotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:19:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,077 CDSs (total) :: 2,013 Genes (coding) :: 1,992 CDSs (with protein) :: 1,992 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Anaerobic sediment from Great Salt Lake, USA" Isolation Country :: USA Latitude :: 41.177 Longitude :: -112.502 Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 6.5 - 7.5 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water, Sediment Energy Source :: Methylotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:19:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,077 CDSs (total) :: 2,013 Genes (coding) :: 1,992 CDSs (with protein) :: 1,992 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Anaerobic sediment from Great Salt Lake, USA" Isolation Country :: USA Latitude :: 41.177 Longitude :: -112.502 Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 6.5 - 7.5 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water, Sediment Energy Source :: Methylotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:19:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,077 CDSs (total) :: 2,013 Genes (coding) :: 1,992 CDSs (with protein) :: 1,992 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 53REFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Anaerobic sediment from Great Salt Lake, USA" Isolation Country :: USA Latitude :: 41.177 Longitude :: -112.502 Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 6.5 - 7.5 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water, Sediment Energy Source :: Methylotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:19:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,077 CDSs (total) :: 2,013 Genes (coding) :: 1,992 CDSs (with protein) :: 1,992 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 53 ncRNAs :: 2REFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Anaerobic sediment from Great Salt Lake, USA" Isolation Country :: USA Latitude :: 41.177 Longitude :: -112.502 Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 6.5 - 7.5 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water, Sediment Energy Source :: Methylotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:19:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,077 CDSs (total) :: 2,013 Genes (coding) :: 1,992 CDSs (with protein) :: 1,992 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 53 ncRNAs :: 2 Pseudo Genes (total) :: 21REFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Anaerobic sediment from Great Salt Lake, USA" Isolation Country :: USA Latitude :: 41.177 Longitude :: -112.502 Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 6.5 - 7.5 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water, Sediment Energy Source :: Methylotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:19:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,077 CDSs (total) :: 2,013 Genes (coding) :: 1,992 CDSs (with protein) :: 1,992 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 53 ncRNAs :: 2 Pseudo Genes (total) :: 21 CDSs (without protein) :: 21REFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Anaerobic sediment from Great Salt Lake, USA" Isolation Country :: USA Latitude :: 41.177 Longitude :: -112.502 Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 6.5 - 7.5 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water, Sediment Energy Source :: Methylotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:19:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,077 CDSs (total) :: 2,013 Genes (coding) :: 1,992 CDSs (with protein) :: 1,992 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 53 ncRNAs :: 2 Pseudo Genes (total) :: 21 CDSs (without protein) :: 21 Pseudo Genes (ambiguous residues) :: 0 of 21REFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Anaerobic sediment from Great Salt Lake, USA" Isolation Country :: USA Latitude :: 41.177 Longitude :: -112.502 Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 6.5 - 7.5 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water, Sediment Energy Source :: Methylotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:19:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,077 CDSs (total) :: 2,013 Genes (coding) :: 1,992 CDSs (with protein) :: 1,992 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 53 ncRNAs :: 2 Pseudo Genes (total) :: 21 CDSs (without protein) :: 21 Pseudo Genes (ambiguous residues) :: 0 of 21 Pseudo Genes (frameshifted) :: 6 of 21REFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Anaerobic sediment from Great Salt Lake, USA" Isolation Country :: USA Latitude :: 41.177 Longitude :: -112.502 Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 6.5 - 7.5 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water, Sediment Energy Source :: Methylotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:19:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,077 CDSs (total) :: 2,013 Genes (coding) :: 1,992 CDSs (with protein) :: 1,992 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 53 ncRNAs :: 2 Pseudo Genes (total) :: 21 CDSs (without protein) :: 21 Pseudo Genes (ambiguous residues) :: 0 of 21 Pseudo Genes (frameshifted) :: 6 of 21 Pseudo Genes (incomplete) :: 2 of 21REFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Anaerobic sediment from Great Salt Lake, USA" Isolation Country :: USA Latitude :: 41.177 Longitude :: -112.502 Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 6.5 - 7.5 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water, Sediment Energy Source :: Methylotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:19:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,077 CDSs (total) :: 2,013 Genes (coding) :: 1,992 CDSs (with protein) :: 1,992 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 53 ncRNAs :: 2 Pseudo Genes (total) :: 21 CDSs (without protein) :: 21 Pseudo Genes (ambiguous residues) :: 0 of 21 Pseudo Genes (frameshifted) :: 6 of 21 Pseudo Genes (incomplete) :: 2 of 21 Pseudo Genes (internal stop) :: 14 of 21REFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Anaerobic sediment from Great Salt Lake, USA" Isolation Country :: USA Latitude :: 41.177 Longitude :: -112.502 Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 6.5 - 7.5 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water, Sediment Energy Source :: Methylotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:19:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,077 CDSs (total) :: 2,013 Genes (coding) :: 1,992 CDSs (with protein) :: 1,992 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 53 ncRNAs :: 2 Pseudo Genes (total) :: 21 CDSs (without protein) :: 21 Pseudo Genes (ambiguous residues) :: 0 of 21 Pseudo Genes (frameshifted) :: 6 of 21 Pseudo Genes (incomplete) :: 2 of 21 Pseudo Genes (internal stop) :: 14 of 21 Pseudo Genes (multiple problems) :: 1 of 21REFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Anaerobic sediment from Great Salt Lake, USA" Isolation Country :: USA Latitude :: 41.177 Longitude :: -112.502 Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 6.5 - 7.5 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water, Sediment Energy Source :: Methylotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:19:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,077 CDSs (total) :: 2,013 Genes (coding) :: 1,992 CDSs (with protein) :: 1,992 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 53 ncRNAs :: 2 Pseudo Genes (total) :: 21 CDSs (without protein) :: 21 Pseudo Genes (ambiguous residues) :: 0 of 21 Pseudo Genes (frameshifted) :: 6 of 21 Pseudo Genes (incomplete) :: 2 of 21 Pseudo Genes (internal stop) :: 14 of 21 Pseudo Genes (multiple problems) :: 1 of 21 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP001994.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085042 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanohalophilus mahii DSM 5219 Culture Collection ID :: DSM 5219, ATCC 35705, OCM 68 GOLD Stamp ID :: Gi02918 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Anaerobic sediment from Great Salt Lake, USA" Isolation Country :: USA Latitude :: 41.177 Longitude :: -112.502 Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 6.5 - 7.5 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water, Sediment Energy Source :: Methylotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:19:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,077 CDSs (total) :: 2,013 Genes (coding) :: 1,992 CDSs (with protein) :: 1,992 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 53 ncRNAs :: 2 Pseudo Genes (total) :: 21 CDSs (without protein) :: 21 Pseudo Genes (ambiguous residues) :: 0 of 21 Pseudo Genes (frameshifted) :: 6 of 21 Pseudo Genes (incomplete) :: 2 of 21 Pseudo Genes (internal stop) :: 14 of 21 Pseudo Genes (multiple problems) :: 1 of 21 ##Genome-Annotation-Data-END## COMPLETENESS: full length.