-- dump date   	20240506_001055
-- class       	Genbank::Contig
-- table       	contig_comment
-- id	comment
NC_013156.1	REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP001696.1.REFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029REFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. WhitmanREFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu)REFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)REFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps withREFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. EachREFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total errorREFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.REFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START##REFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86REFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213REFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047REFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16REFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sampleREFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at aREFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600mREFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600mREFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: AnaerobeREFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shapedREFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: MotileREFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: NonsporulatingREFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: ThermophileREFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89CREFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5REFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram-REFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, MarineREFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, PiezophileREFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, LithotrophREFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END##REFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10REFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5REFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,662REFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,662 CDSs (total)                      :: 1,617REFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,662 CDSs (total)                      :: 1,617 Genes (coding)                    :: 1,595REFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,662 CDSs (total)                      :: 1,617 Genes (coding)                    :: 1,595 CDSs (with protein)               :: 1,595REFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,662 CDSs (total)                      :: 1,617 Genes (coding)                    :: 1,595 CDSs (with protein)               :: 1,595 Genes (RNA)                       :: 45REFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,662 CDSs (total)                      :: 1,617 Genes (coding)                    :: 1,595 CDSs (with protein)               :: 1,595 Genes (RNA)                       :: 45 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,662 CDSs (total)                      :: 1,617 Genes (coding)                    :: 1,595 CDSs (with protein)               :: 1,595 Genes (RNA)                       :: 45 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,662 CDSs (total)                      :: 1,617 Genes (coding)                    :: 1,595 CDSs (with protein)               :: 1,595 Genes (RNA)                       :: 45 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 37REFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,662 CDSs (total)                      :: 1,617 Genes (coding)                    :: 1,595 CDSs (with protein)               :: 1,595 Genes (RNA)                       :: 45 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 37 ncRNAs                            :: 2REFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,662 CDSs (total)                      :: 1,617 Genes (coding)                    :: 1,595 CDSs (with protein)               :: 1,595 Genes (RNA)                       :: 45 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 37 ncRNAs                            :: 2 Pseudo Genes (total)              :: 22REFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,662 CDSs (total)                      :: 1,617 Genes (coding)                    :: 1,595 CDSs (with protein)               :: 1,595 Genes (RNA)                       :: 45 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 37 ncRNAs                            :: 2 Pseudo Genes (total)              :: 22 CDSs (without protein)            :: 22REFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,662 CDSs (total)                      :: 1,617 Genes (coding)                    :: 1,595 CDSs (with protein)               :: 1,595 Genes (RNA)                       :: 45 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 37 ncRNAs                            :: 2 Pseudo Genes (total)              :: 22 CDSs (without protein)            :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22REFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,662 CDSs (total)                      :: 1,617 Genes (coding)                    :: 1,595 CDSs (with protein)               :: 1,595 Genes (RNA)                       :: 45 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 37 ncRNAs                            :: 2 Pseudo Genes (total)              :: 22 CDSs (without protein)            :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22 Pseudo Genes (frameshifted)       :: 15 of 22REFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,662 CDSs (total)                      :: 1,617 Genes (coding)                    :: 1,595 CDSs (with protein)               :: 1,595 Genes (RNA)                       :: 45 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 37 ncRNAs                            :: 2 Pseudo Genes (total)              :: 22 CDSs (without protein)            :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22 Pseudo Genes (frameshifted)       :: 15 of 22 Pseudo Genes (incomplete)         :: 6 of 22REFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,662 CDSs (total)                      :: 1,617 Genes (coding)                    :: 1,595 CDSs (with protein)               :: 1,595 Genes (RNA)                       :: 45 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 37 ncRNAs                            :: 2 Pseudo Genes (total)              :: 22 CDSs (without protein)            :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22 Pseudo Genes (frameshifted)       :: 15 of 22 Pseudo Genes (incomplete)         :: 6 of 22 Pseudo Genes (internal stop)      :: 6 of 22REFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,662 CDSs (total)                      :: 1,617 Genes (coding)                    :: 1,595 CDSs (with protein)               :: 1,595 Genes (RNA)                       :: 45 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 37 ncRNAs                            :: 2 Pseudo Genes (total)              :: 22 CDSs (without protein)            :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22 Pseudo Genes (frameshifted)       :: 15 of 22 Pseudo Genes (incomplete)         :: 6 of 22 Pseudo Genes (internal stop)      :: 6 of 22 Pseudo Genes (multiple problems)  :: 4 of 22REFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,662 CDSs (total)                      :: 1,617 Genes (coding)                    :: 1,595 CDSs (with protein)               :: 1,595 Genes (RNA)                       :: 45 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 37 ncRNAs                            :: 2 Pseudo Genes (total)              :: 22 CDSs (without protein)            :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22 Pseudo Genes (frameshifted)       :: 15 of 22 Pseudo Genes (incomplete)         :: 6 of 22 Pseudo Genes (internal stop)      :: 6 of 22 Pseudo Genes (multiple problems)  :: 4 of 22 CRISPR Arrays                     :: 7REFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,662 CDSs (total)                      :: 1,617 Genes (coding)                    :: 1,595 CDSs (with protein)               :: 1,595 Genes (RNA)                       :: 45 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 37 ncRNAs                            :: 2 Pseudo Genes (total)              :: 22 CDSs (without protein)            :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22 Pseudo Genes (frameshifted)       :: 15 of 22 Pseudo Genes (incomplete)         :: 6 of 22 Pseudo Genes (internal stop)      :: 6 of 22 Pseudo Genes (multiple problems)  :: 4 of 22 CRISPR Arrays                     :: 7 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP001696.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,662 CDSs (total)                      :: 1,617 Genes (coding)                    :: 1,595 CDSs (with protein)               :: 1,595 Genes (RNA)                       :: 45 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 37 ncRNAs                            :: 2 Pseudo Genes (total)              :: 22 CDSs (without protein)            :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22 Pseudo Genes (frameshifted)       :: 15 of 22 Pseudo Genes (incomplete)         :: 6 of 22 Pseudo Genes (internal stop)      :: 6 of 22 Pseudo Genes (multiple problems)  :: 4 of 22 CRISPR Arrays                     :: 7 ##Genome-Annotation-Data-END## COMPLETENESS: full length.
NC_013157.1	REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP001697.1.REFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029REFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. WhitmanREFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu)REFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)REFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps withREFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. EachREFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total errorREFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.REFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START##REFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86REFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213REFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047REFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16REFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sampleREFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at aREFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600mREFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600mREFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: AnaerobeREFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shapedREFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: MotileREFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: NonsporulatingREFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: ThermophileREFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89CREFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5REFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram-REFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, MarineREFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, PiezophileREFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, LithotrophREFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END##REFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10REFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5REFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,662REFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,662 CDSs (total)                      :: 1,617REFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,662 CDSs (total)                      :: 1,617 Genes (coding)                    :: 1,595REFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,662 CDSs (total)                      :: 1,617 Genes (coding)                    :: 1,595 CDSs (with protein)               :: 1,595REFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,662 CDSs (total)                      :: 1,617 Genes (coding)                    :: 1,595 CDSs (with protein)               :: 1,595 Genes (RNA)                       :: 45REFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,662 CDSs (total)                      :: 1,617 Genes (coding)                    :: 1,595 CDSs (with protein)               :: 1,595 Genes (RNA)                       :: 45 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,662 CDSs (total)                      :: 1,617 Genes (coding)                    :: 1,595 CDSs (with protein)               :: 1,595 Genes (RNA)                       :: 45 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,662 CDSs (total)                      :: 1,617 Genes (coding)                    :: 1,595 CDSs (with protein)               :: 1,595 Genes (RNA)                       :: 45 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 37REFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,662 CDSs (total)                      :: 1,617 Genes (coding)                    :: 1,595 CDSs (with protein)               :: 1,595 Genes (RNA)                       :: 45 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 37 ncRNAs                            :: 2REFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,662 CDSs (total)                      :: 1,617 Genes (coding)                    :: 1,595 CDSs (with protein)               :: 1,595 Genes (RNA)                       :: 45 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 37 ncRNAs                            :: 2 Pseudo Genes (total)              :: 22REFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,662 CDSs (total)                      :: 1,617 Genes (coding)                    :: 1,595 CDSs (with protein)               :: 1,595 Genes (RNA)                       :: 45 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 37 ncRNAs                            :: 2 Pseudo Genes (total)              :: 22 CDSs (without protein)            :: 22REFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,662 CDSs (total)                      :: 1,617 Genes (coding)                    :: 1,595 CDSs (with protein)               :: 1,595 Genes (RNA)                       :: 45 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 37 ncRNAs                            :: 2 Pseudo Genes (total)              :: 22 CDSs (without protein)            :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22REFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,662 CDSs (total)                      :: 1,617 Genes (coding)                    :: 1,595 CDSs (with protein)               :: 1,595 Genes (RNA)                       :: 45 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 37 ncRNAs                            :: 2 Pseudo Genes (total)              :: 22 CDSs (without protein)            :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22 Pseudo Genes (frameshifted)       :: 15 of 22REFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,662 CDSs (total)                      :: 1,617 Genes (coding)                    :: 1,595 CDSs (with protein)               :: 1,595 Genes (RNA)                       :: 45 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 37 ncRNAs                            :: 2 Pseudo Genes (total)              :: 22 CDSs (without protein)            :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22 Pseudo Genes (frameshifted)       :: 15 of 22 Pseudo Genes (incomplete)         :: 6 of 22REFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,662 CDSs (total)                      :: 1,617 Genes (coding)                    :: 1,595 CDSs (with protein)               :: 1,595 Genes (RNA)                       :: 45 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 37 ncRNAs                            :: 2 Pseudo Genes (total)              :: 22 CDSs (without protein)            :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22 Pseudo Genes (frameshifted)       :: 15 of 22 Pseudo Genes (incomplete)         :: 6 of 22 Pseudo Genes (internal stop)      :: 6 of 22REFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,662 CDSs (total)                      :: 1,617 Genes (coding)                    :: 1,595 CDSs (with protein)               :: 1,595 Genes (RNA)                       :: 45 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 37 ncRNAs                            :: 2 Pseudo Genes (total)              :: 22 CDSs (without protein)            :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22 Pseudo Genes (frameshifted)       :: 15 of 22 Pseudo Genes (incomplete)         :: 6 of 22 Pseudo Genes (internal stop)      :: 6 of 22 Pseudo Genes (multiple problems)  :: 4 of 22REFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,662 CDSs (total)                      :: 1,617 Genes (coding)                    :: 1,595 CDSs (with protein)               :: 1,595 Genes (RNA)                       :: 45 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 37 ncRNAs                            :: 2 Pseudo Genes (total)              :: 22 CDSs (without protein)            :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22 Pseudo Genes (frameshifted)       :: 15 of 22 Pseudo Genes (incomplete)         :: 6 of 22 Pseudo Genes (internal stop)      :: 6 of 22 Pseudo Genes (multiple problems)  :: 4 of 22 CRISPR Arrays                     :: 7REFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,662 CDSs (total)                      :: 1,617 Genes (coding)                    :: 1,595 CDSs (with protein)               :: 1,595 Genes (RNA)                       :: 45 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 37 ncRNAs                            :: 2 Pseudo Genes (total)              :: 22 CDSs (without protein)            :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22 Pseudo Genes (frameshifted)       :: 15 of 22 Pseudo Genes (incomplete)         :: 6 of 22 Pseudo Genes (internal stop)      :: 6 of 22 Pseudo Genes (multiple problems)  :: 4 of 22 CRISPR Arrays                     :: 7 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP001697.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085029 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus fervens AG86 Culture Collection ID :: DSM 4213 GOLD Stamp ID         :: Gi02047 Greengenes ID         :: 16 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the East Pacific Rise at a                          depth of 2600m Depth                 :: 2600m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 49 - 89C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Phenotypes            :: Methanogen, Piezophile Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:19:10 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,662 CDSs (total)                      :: 1,617 Genes (coding)                    :: 1,595 CDSs (with protein)               :: 1,595 Genes (RNA)                       :: 45 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 37 ncRNAs                            :: 2 Pseudo Genes (total)              :: 22 CDSs (without protein)            :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22 Pseudo Genes (frameshifted)       :: 15 of 22 Pseudo Genes (incomplete)         :: 6 of 22 Pseudo Genes (internal stop)      :: 6 of 22 Pseudo Genes (multiple problems)  :: 4 of 22 CRISPR Arrays                     :: 7 ##Genome-Annotation-Data-END## COMPLETENESS: full length.