-- dump date   	20140619_140423
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_003505803.1	InterPro IPR001957:IPR013159:IPR013317:IPR003593; COGs: COG0593 ATPase involved in DNA replication initiation; KEGG: bcr:BCAH187_A0001 chromosomal replication initiator protein DnaA; SPTR: Q72H87 Chromosomal replication initiator protein dnaA; SMART: Chromosomal replication initiator DnaA domain; AAA ATPase; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Bacterial dnaA protein; Bacterial dnaA protein helix-turn-helix domain; TIGRFAM: chromosomal replication initiator protein DnaA
YP_003505804.1	COGs: COG0592 DNA polymerase sliding clamp subunit (PCNA homolog); KEGG: rpt:Rpal_0002 DNA polymerase III, beta subunit; SPTR: A3WSP5 DNA polymerase III subunit beta; SMART: DNA polymerase III beta chain; PFAM: DNA polymerase III beta chain; PRIAM: DNA-directed DNA polymerase; TIGRFAM: DNA polymerase III, beta subunit; InterPro IPR001001; PFAM: DNA polymerase III beta subunit, C-terminal domain; DNA polymerase III beta subunit, N-terminal domain; DNA polymerase III beta subunit, central domain; TIGRFAM: DNA polymerase III, beta subunit
YP_003505805.1	TIGRFAM: enolase; PRIAM: Phosphopyruvate hydratase; PFAM: enolase; SPTR: Q5SME1 Enolase; KEGG: aba:Acid345_1070 enolase; COGs: COG0148 Enolase; InterPro IPR000941; PFAM: Enolase, N-terminal domain; Enolase, C-terminal TIM barrel domain; TIGRFAM: phosphopyruvate hydratase
YP_003505806.1	TIGRFAM: pyruvate kinase; PRIAM: Pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; SPTR: A7CAK5 Pyruvate kinase; KEGG: acr:Acry_0178 pyruvate kinase; COGs: COG0469 Pyruvate kinase; InterPro IPR015793:IPR015794:IPR001697; PFAM: Pyruvate kinase, alpha/beta domain; Pyruvate kinase, barrel domain; TIGRFAM: pyruvate kinase
YP_003505807.1	SPTR: A3SC39 Putative uncharacterized protein; KEGG: rde:RD1_2059 hypothetical protein; COGs: COG4188 dienelactone hydrolase
YP_003505808.1	KEGG: threonine dehydratase protein ; K01754 threonine dehydratase
YP_003505809.1	PFAM: AzlC family protein; KEGG: pmy:Pmen_3295 AzlC family protein; COGs: COG1296 branched-chain amino acid permease (azaleucine resistance); SPTR: A7D5P3 AzlC family protein; InterPro IPR011606; PFAM: AzlC protein; TIGRFAM: 4-azaleucine resistance probable transporter AzlC
YP_003505810.1	PFAM: branched-chain amino acid transport; SPTR: A7D5P4 Branched-chain amino acid transport; KEGG: pmy:Pmen_3294 branched-chain amino acid transport; COGs: COG4392 membrane protein; InterPro IPR008407; PFAM: Branched-chain amino acid transport protein (AzlD)
YP_003505811.1	KEGG: maq:Maqu_2902 hypothetical protein; SPTR: A4TWV7 Putative uncharacterized protein; PFAM: protein of unknown function DUF6 transmembrane; InterPro IPR000620; PFAM: Integral membrane protein DUF6
YP_003505812.1	SPTR: A3HSK9 Putative oxidoreductase; PFAM: Luciferase-like monooxygenase; KEGG: mlo:mlr4867 oxidoreductase, (N5,N10-methylenetetrahydromethanopterin reductase); COGs: COG2141 Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase; InterPro IPR016048; PFAM: Luciferase-like monooxygenase
YP_003505813.1	SPTR: A0Z484 IdsA; PFAM: Polyprenyl synthetase; KEGG: dvm:DvMF_2490 polyprenyl synthetase; InterPro IPR000092; COGs: COG0142 Geranylgeranyl pyrophosphate synthase; PFAM: Polyprenyl synthetase
YP_003505815.1	PFAM: PspA/IM30 family protein; SPTR: Q9RUB7 Phage shock protein A homolog; COGs: COG1842 Phage shock protein A (IM30) suppresses sigma54-dependent transcription; KEGG: scl:sce5472 chloroplast membrane-associated 30 kD protein; InterPro IPR007157; PFAM: PspA/IM30 family
YP_003505819.1	SPTR: Q72H81 1-deoxy-D-xylulose-5-phosphate synthase; KEGG: mpt:Mpe_A2631 1-deoxy-D-xylulose-5-phosphate synthase; COGs: COG1154 Deoxyxylulose-5-phosphate synthase; InterPro IPR005476:IPR005475:IPR005477; TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase central region; Transketolase domain protein; PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; TIGRFAM: 1-deoxy-D-xylulose-5-phosphate synthase
YP_003505821.1	COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR001279; KEGG: met:M446_1047 beta-lactamase domain-containing protein; SPTR: A2UAT4 Beta-lactamase-like; PFAM: beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily
YP_003505822.1	SMART: Rhodanese domain protein; PFAM: Rhodanese domain protein; SPTR: A4AFL8 Putative uncharacterized protein; InterPro IPR001763; COGs: COG0607 Rhodanese-related sulfurtransferase; KEGG: tgr:Tgr7_2218 rhodanese domain protein; PFAM: Rhodanese-like domain
YP_003505823.1	TIGRFAM: glutaredoxin-like domain protein; COGs: COG3634 Alkyl hydroperoxide reductase large subunit; KEGG: ank:AnaeK_2804 glutaredoxin-like domain protein; SPTR: B5IAV2 Glutaredoxin-like domain protein; InterPro IPR011903; TIGRFAM: Glutaredoxin-like domain protein
YP_003505824.1	COGs: COG0607 Rhodanese-related sulfurtransferase; KEGG: gme:Gmet_3122 rhodanese-like protein; SPTR: A6CTX9 YrkF; SMART: Rhodanese domain protein; PFAM: Rhodanese domain protein; InterPro IPR001763; PFAM: Rhodanese-like domain
YP_003505825.1	COGs: COG1937 conserved hypothetical protein; KEGG: pzu:PHZ_c1054 hypothetical protein; SPTR: A1BZQ7 Putative uncharacterized protein; PFAM: protein of unknown function DUF156; InterPro IPR003735; PFAM: Uncharacterised BCR, COG1937
YP_003505827.1	COGs: COG0219 rRNA methylase (SpoU class); KEGG: bba:Bd0271 rRNA methyltransferase; SPTR: A3Z2B0 Probable tRNA/rRNA methyltransferase; PFAM: tRNA/rRNA methyltransferase (SpoU); InterPro IPR001537; PFAM: SpoU rRNA Methylase family; TIGRFAM: rRNA methylase, putative, group 2
YP_003505828.1	TIGRFAM: N-acetyl-ornithine/N-acetyl-lysine deacetylase; PFAM: peptidase M20; SPTR: Q5SHH3 Acetyl-lysine deacetylase; KEGG: dps:DP1385 peptidase; COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR002933:IPR010175; PFAM: Peptidase family M20/M25/M40; TIGRFAM: N-acetyl-ornithine/N-acetyl-lysine deacetylase
YP_003505829.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: P03942 Ferredoxin; KEGG: ank:AnaeK_2333 4Fe-4S ferredoxin iron-sulfur binding domain protein; InterPro IPR000813:IPR001450:IPR017900; PFAM: 4Fe-4S binding domain
YP_003505830.1	PFAM: major facilitator superfamily MFS_1; SPTR: A6CFW4 Major facilitator family transporter; KEGG: afw:Anae109_0793 major facilitator transporter; InterPro IPR011701:IPR007114; PFAM: Major Facilitator Superfamily
YP_003505832.1	PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; InterPro IPR001789:IPR001867; KEGG: dac:Daci_0123 two component transcriptional regulator; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; SPTR: A3RYN8 Transcriptional regulator, two component response regulator; PFAM: Transcriptional regulatory protein, C terminal; Response regulator receiver domain
YP_003505833.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; InterProIPR004358:IPR003594:IPR003661:IPR003660:IPR 005467; KEGG: psb:Psyr_2867 sensor histidine kinase; COGs: COG5002 Signal transduction histidine kinase; SPTR: A7CBG9 Sensor protein; PFAM: His Kinase A (phosphoacceptor) domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; HAMP domain
YP_003505834.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; InterProIPR004358:IPR003594:IPR003661:IPR003660:IPR 005467; KEGG: sfu:Sfum_2006 integral membrane sensor signal transduction histidine kinase; COGs: COG0642 Signal transduction histidine kinase; SPTR: A6F2K0 Sensor protein; PFAM: His Kinase A (phosphoacceptor) domain; HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_003505835.1	PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; InterPro IPR001789:IPR001867; KEGG: psa:PST_2709 probable two-component response regulator; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; SPTR: A5XX47 DNA-binding response regulator; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_003505836.1	KEGG: ccs:CCNA_02263 protein GlcG
YP_003505837.1	KEGG: tbd:Tbd_2741 hypothetical protein; SPTR: Q46BC1 Putative uncharacterized protein; PFAM: Predicted membrane protein (DUF2078)
YP_003505838.1	PFAM: intradiol ring-cleavage dioxygenase; SPTR: A3VF44 Putative protocatechuate dioxygenase; InterPro IPR000627:IPR002052:IPR006311; COGs: COG3485 Protocatechuate 3 4-dioxygenase beta subunit; KEGG: noc:Noc_2416 intradiol ring-cleavage dioxygenase; PFAM: Dioxygenase; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence
YP_003505839.1	PFAM: ApbE family lipoprotein; SPTR: A6C767 NosX protein, putative; InterPro IPR003374; COGs: COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis; KEGG: sus:Acid_5642 ApbE family lipoprotein; PFAM: ApbE family
YP_003505840.1	SPTR: A6C767 NosX protein, putative; InterPro IPR006311; COGs: COG3656 periplasmic protein; KEGG: sus:Acid_5642 ApbE family lipoprotein; PFAM: Predicted periplasmic protein (DUF2271)
YP_003505841.1	PFAM: PepSY-associated TM helix domain protein; SPTR: A6C766 Putative uncharacterized protein; InterPro IPR005625; COGs: COG3295 conserved hypothetical protein; KEGG: sus:Acid_7488 PepSY-associated TM helix domain-containing protein; PFAM: PepSY-associated TM helix
YP_003505842.1	PFAM: conserved hypothetical protein; SPTR: A0BUP6 Chromosome undetermined scaffold_13, whole genome shotgun sequence; InterPro IPR008313; COGs: COG3538 conserved hypothetical protein; KEGG: hypothetical protein; PFAM: Protein of unknown function (DUF1237)
YP_003505844.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A0ZJR0 Permease protein of sugar ABC transporter; InterPro IPR000515; COGs: COG0395 ABC-type sugar transport system permease component; KEGG: oan:Oant_2483 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003505845.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A4BGH5 Putative binding-protein-dependent transport protein; InterPro IPR000515; COGs: COG1175 ABC-type sugar transport systems permease components; KEGG: atc:AGR_L_458 sugar ABC transporter, permease protein; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003505846.1	COGs: COG1653 ABC-type sugar transport system periplasmic component; InterPro IPR006059; KEGG: oan:Oant_2485 extracellular solute-binding protein family 1; SPTR: B5IRL8 Bacterial extracellular solute-binding protein, putative; PFAM: extracellular solute-binding protein family 1; PFAM: Bacterial extracellular solute-binding protein
YP_003505847.1	PFAM: protein of unknown function UPF0079; SPTR: A7JPS5 Possible ATPase; InterPro IPR003442; COGs: COG0802 ATPase or kinase; KEGG: eba:ebA4453 hypothetical protein; PFAM: Uncharacterised P-loop hydrolase UPF0079; TIGRFAM: conserved hypothetical nucleotide-binding protein
YP_003505848.1	PFAM: major facilitator superfamily MFS_1; SPTR: A6E7B4 Tetracycline resistance protein; InterPro IPR001958:IPR011701:IPR007114:IPR005829; COGs: COG2814 Arabinose efflux permease; KEGG: rce:RC1_1688 tetracycline resistance protein, class C; PFAM: Major Facilitator Superfamily; TIGRFAM: Multidrug resistance protein
YP_003505849.1	PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein; InterPro IPR002589; KEGG: sfu:Sfum_0998 Appr-1-p processing domain protein; COGs: COG2110 phosphatase homologous to the C-terminal domain of histone macroH2A1; SPTR: A8A9L9 Appr-1-p processing domain protein; PFAM: Macro domain
YP_003505850.1	KEGG: Tchh; trichohyalin
YP_003505851.1	PFAM: PilT protein domain protein; SPTR: A7BSJ7 Putative uncharacterized protein; InterPro IPR002716; COGs: COG5573 nucleic-acid-binding protein contains PIN domain; KEGG: tgr:Tgr7_3220 PilT domain-containing protein; PFAM: PIN domain
YP_003505852.1	PFAM: peptidase C45 acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase; InterPro IPR005079; KEGG: pol:Bpro_1442 peptidase C45, acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase; SPTR: A5DPG6 Putative uncharacterized protein; PFAM: Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase
YP_003505853.1	PFAM: metallophosphoesterase; InterPro IPR006186:IPR004843; KEGG: mxa:MXAN_5467 metallophosphoesterase; SPTR: A4C405 Putative uncharacterized protein; PFAM: Calcineurin-like phosphoesterase
YP_003505854.1	PFAM: Chromate transporter; SPTR: A7CMB6 Chromate transporter; InterPro IPR003370; COGs: COG2059 Chromate transport protein ChrA; KEGG: rpi:Rpic_0832 chromate transporter; PFAM: Chromate transporter
YP_003505855.1	PFAM: Chromate transporter; SPTR: A2W6U6 Putative uncharacterized protein; InterPro IPR003370; COGs: COG2059 Chromate transport protein ChrA; KEGG: spe:Spro_2328 chromate transporter; PFAM: Chromate transporter
YP_003505856.1	PFAM: GCN5-related N-acetyltransferase; InterPro IPR000182; KEGG: hch:HCH_02205 acetyltransferase (GNAT) family protein; SPTR: A4BBE4 Acetyltransferase (GNAT) family protein; PFAM: Acetyltransferase (GNAT) family
YP_003505857.1	PFAM: GCN5-related N-acetyltransferase; InterPro IPR000182; KEGG: mxa:MXAN_1686 acetyltransferase, GNAT family; SPTR: A0YP58 Acetyltransferase, putative; PFAM: Acetyltransferase (GNAT) family
YP_003505858.1	PFAM: GCN5-related N-acetyltransferase; InterPro IPR000182; KEGG: acp:A2cp1_1057 GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_003505859.1	PFAM: GCN5-related N-acetyltransferase; InterPro IPR000182; COGs: COG3153 acetyltransferase; KEGG: ank:AnaeK_1054 GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_003505860.1	PFAM: GCN5-related N-acetyltransferase; InterPro IPR000182; KEGG: ank:AnaeK_1054 GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_003505861.1	KEGG: rru:Rru_A3071 hypothetical protein
YP_003505862.1	SPTR: A0ZHS2 Two-component response regulator; KEGG: mag:amb1211 response regulator; COGs: COG2206 HD-GYP domain; SMART: metal-dependent phosphohydrolase HD region; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; InterPro IPR006674:IPR003607:IPR006675; PFAM: HD domain; GAF domain; TIGRFAM: uncharacterized domain HDIG
YP_003505863.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; SPTR: A6C2N0 Putative short-chain dehydrogenase; InterPro IPR002347:IPR013968:IPR002198; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); KEGG: oan:Oant_3756 short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase
YP_003505864.1	PFAM: ATP-cone domain protein; SPTR: Q5SM09 Transcriptional repressor nrdR; InterPro IPR005144:IPR003796; COGs: COG1327 transcriptional regulator protein consists of a Zn-ribbon and ATP-cone domains; KEGG: smd:Smed_0817 hypothetical protein; PFAM: ATP cone domain; TIGRFAM: transcriptional regulator NrdR
YP_003505865.1	PFAM: protein of unknown function DUF164; SPTR: A6DEI7 Putative uncharacterized protein; InterPro IPR003743; COGs: COG1579 Zn-ribbon protein possibly nucleic acid-binding; KEGG: protein of unknown function DUF164 ; K07164; PFAM: Putative zinc ribbon domain
YP_003505866.1	PFAM: NUDIX hydrolase; InterPro IPR000086; KEGG: smt:Smal_2419 NUDIX hydrolase; SPTR: A6DL70 8-oxodGTP nucleoside triphosphatase; PFAM: NUDIX domain
YP_003505867.1	KEGG: ilo:IL2508 hypothetical protein
YP_003505868.1	PFAM: short-chain dehydrogenase/reductase SDR; SPTR: A3SKK6 Short-chain dehydrogenase/reductase SDR; KEGG: mno:Mnod_3437 short-chain dehydrogenase/reductase SDR; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002347:IPR002424:IPR002198; PFAM: short chain dehydrogenase
YP_003505869.1	TIGRFAM: transcriptional regulator, AbrB family; InterPro IPR007159:IPR006339; KEGG: tgr:Tgr7_2437 transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; PFAM: SpoVT / AbrB like domain; TIGRFAM: looped-hinge helix DNA binding domain, AbrB family
YP_003505871.1	TIGRFAM: N-carbamoylputrescine amidase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; InterPro IPR003010:IPR017755; KEGG: rce:RC1_0659 hydrolase, carbon-nitrogen family; COGs: COG0388 amidohydrolase; SPTR: A3LHA0 N-carbamoylputrescine amidohydrolase; PFAM: Carbon-nitrogen hydrolase; TIGRFAM: N-carbamoylputrescine amidase
YP_003505872.1	PRIAM: Agmatine deiminase; PFAM: Porphyromonas-type peptidyl-arginine deiminase; InterPro IPR007466; KEGG: sat:SYN_02393 peptidylarginine deiminase related enzyme; COGs: COG2957 Peptidylarginine deiminase; SPTR: A3HZY5 Peptidylarginine deiminase related enzyme; PFAM: Porphyromonas-type peptidyl-arginine deiminase
YP_003505873.1	PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; SPTR: A3TR96 Putative L,L-Cystathionine gamma-Lyase; InterPro IPR000277; COGs: COG0626 Cystathionine beta-lyase/cystathionine gamma-synthase; KEGG: pol:Bpro_2831 cystathionine gamma-lyase; PFAM: Cys/Met metabolism PLP-dependent enzyme
YP_003505875.1	PFAM: Phosphoglycerate mutase; SPTR: A2VSV8 Phosphoglycerate/bisphosphoglycerate mutase; InterPro IPR013078:IPR001345; COGs: COG0406 Fructose-2 6-bisphosphatase; KEGG: afr:AFE_0621 phosphoglycerate mutase family protein; PFAM: Phosphoglycerate mutase family
YP_003505876.1	TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; PRIAM: Phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; InterPro IPR010918:IPR000728:IPR004733; KEGG: ftn:FTN_0419 phosphoribosylaminoimidazole synthetase; COGs: COG0150 Phosphoribosylaminoimidazole (AIR) synthetase; SPTR: Q24QH4 Phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein, C-terminal domain; AIR synthase related protein, N-terminal domain; TIGRFAM: phosphoribosylaminoimidazole synthetase
YP_003505877.1	SPTR: Q72H75 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; KEGG: afw:Anae109_4336 aspartyl/glutamyl-tRNA amidotransferase subunit B; PFAM: GatB region; GatB/Yqey domain protein; GatB central domain protein; InterPro IPR006075:IPR003789:IPR006107:IPR004413; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; COGs: COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog); PFAM: PET112 family, C terminal region; PET112 family, N terminal region; GatB domain; TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit
YP_003505878.1	PFAM: Lytic transglycosylase catalytic; InterPro IPR008258; KEGG: zmo:ZMO1186 lytic murein transglycosylase; SPTR: Q859R5 ORF27; PFAM: Transglycosylase SLT domain
YP_003505879.1	SPTR: Q859S0 Putative uncharacterized protein
YP_003505884.1	KEGG: GH10367 gene product from transcript GH10367-RA
YP_003505886.1	SPTR: Q859S6 Putative uncharacterized protein
YP_003505887.1	SPTR: Q859S7 Putative uncharacterized protein
YP_003505888.1	SPTR: Q859S8 Putative uncharacterized protein
YP_003505889.1	SPTR: Q859S9 Major structure protein
YP_003505890.1	SPTR: Q859T0 Putative uncharacterized protein
YP_003505891.1	SPTR: B3XVS9 Putative uncharacterized protein
YP_003505892.1	PFAM: cell wall hydrolase/autolysin; SPTR: A3UD36 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; KEGG: ngk:NGK_1784 putative amidase; PFAM: N-acetylmuramoyl-L-alanine amidase
YP_003505893.1	SPTR: Q859T3 Putative uncharacterized protein
YP_003505894.1	KEGG: bbk:BARBAKC583_0145 TolA domain-containing protein
YP_003505895.1	SPTR: Q859T5 Putative uncharacterized protein
YP_003505896.1	SPTR: Q859T6 Putative uncharacterized protein
YP_003505897.1	KEGG: bpd:BURPS668_2992 Smr domain-containing protein
YP_003505898.1	KEGG: abu:Abu_1491 hypothetical protein; SPTR: A7KH28 NapU3
YP_003505899.1	TIGRFAM: ATP-dependent helicase HrpB; PFAM: Helicase ATP-dependent domain protein; helicase-associated domain protein; helicase domain protein; SMART: helicase domain protein; DEAD-like helicase; InterProIPR007502:IPR001650:IPR013689:IPR014001:IPR 014021:IPR010225; KEGG: pae:PA3961 ATP-dependent helicase; COGs: COG1643 HrpA-like helicase; SPTR: A3KYL5 Putative uncharacterized protein; PFAM: Helicase conserved C-terminal domain; ATP-dependent helicase C-terminal; Helicase associated domain (HA2); TIGRFAM: ATP-dependent helicase HrpB
YP_003505902.1	PFAM: Citrate transporter; Arsenical pump membrane protein; SPTR: A7CSU5 Citrate transporter; InterPro IPR000802:IPR004680; COGs: COG1055 Na+/H+ antiporter NhaD and related arsenite permease; KEGG: sus:Acid_4340 citrate transporter; PFAM: Citrate transporter
YP_003505903.1	PFAM: protein of unknown function DUF633; SPTR: A1HPB2 Putative uncharacterized protein; InterPro IPR006901; COGs: COG2384 SAM-dependent methyltransferase; KEGG: pfl:PFL_2370 hypothetical protein; PFAM: Family of unknown function (DUF633)
YP_003505904.1	PFAM: protein of unknown function DUF395 YeeE/YedE; InterPro IPR007272; KEGG: tcx:Tcr_0170 hypothetical protein; SPTR: A3UA77 Putative uncharacterized protein; PFAM: YeeE/YedE family (DUF395)
YP_003505905.1	PFAM: protein of unknown function DUF395 YeeE/YedE; InterPro IPR007272; KEGG: rfr:Rfer_1811 protein of unknown function DUF395, YeeE/YedE; SPTR: A3I1E7 Putative uncharacterized protein; PFAM: YeeE/YedE family (DUF395)
YP_003505906.1	PFAM: PEGA domain protein; InterPro IPR013229; KEGG: aba:Acid345_2682 serine/threonine protein kinase; SPTR: B7R0L3 Serine/threonine-protein kinase; PFAM: PEGA domain
YP_003505909.1	PFAM: E3 binding domain protein; InterPro IPR004167; KEGG: actin binding; SPTR: Q58NA5 Plus agglutinin (Fragment); PFAM: e3 binding domain
YP_003505910.1	COGs: COG2309 Leucyl aminopeptidase (aminopeptidase T); InterPro IPR000787; KEGG: gur:Gura_1909 peptidase M29, aminopeptidase II; SPTR: A2BKG8 Leucyl aminopeptidase, AmpS; PFAM: peptidase M29 aminopeptidase II; PFAM: Thermophilic metalloprotease (M29)
YP_003505911.1	PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; InterPro IPR000110:IPR003029; KEGG: mxa:MXAN_3793 30S ribosomal protein S1; COGs: COG0539 Ribosomal protein S1; SPTR: A7CXU2 Ribosomal protein S1; PFAM: S1 RNA binding domain; TIGRFAM: ribosomal protein S1
YP_003505912.1	TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: molybdopterin biosynthesis MoaE protein; thiamineS protein; InterPro IPR003749:IPR003448:IPR010034; KEGG: mxa:MXAN_2564 molybdopterin converting factor, subunits 1/2; COGs: COG0314 Molybdopterin converting factor large subunit; SPTR: A4KLL7 MoaD-moaE fusion protein moaX; PFAM: MoaE protein; ThiS family; TIGRFAM: molybdopterin converting factor, subunit 1, non-archaeal
YP_003505913.1	PFAM: regulatory protein DeoR; SPTR: A2UB58 Heat-inducible transcription repressor HrcA; InterPro IPR001034; COGs: COG1420 Transcriptional regulator of heat shock gene; KEGG: cvi:CV_1608 heat-inducible transcription repressor; PFAM: DeoR-like helix-turn-helix domain; TIGRFAM: heat shock gene repressor HrcA
YP_003505915.1	TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; InterPro IPR010256:IPR001905; KEGG: scl:sce2376 ammonium transporter; COGs: COG0004 Ammonia permease; SPTR: Q8PYW6 Ammonium transporter; PFAM: Ammonium Transporter Family; TIGRFAM: ammonium transporter
YP_003505916.1	PFAM: nitrogen regulatory protein P-II; SPTR: A6PUC8 Nitrogen regulatory protein P-II; InterPro IPR002187:IPR017918; COGs: COG0347 Nitrogen regulatory protein PII; KEGG: cak:Caul_0380 nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein P-II
YP_003505917.1	TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; InterPro IPR001537:IPR013123:IPR004441; KEGG: bha:BH0113 tRNA/rRNA methyltransferase; COGs: COG0566 rRNA methylase; SPTR: Q06753 Putative trmH family tRNA/rRNA methyltransferase yacO; PFAM: RNA 2'-O ribose methyltransferase substrate binding; SpoU rRNA Methylase family; TIGRFAM: rRNA methylase, putative, group 3
YP_003505918.1	TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; InterPro IPR001482:IPR003593:IPR006321; KEGG: ppd:Ppro_3178 twitching motility protein; COGs: COG2805 Tfp pilus assembly protein pilus retraction ATPase PilT; SPTR: A1HQ23 Twitching motility protein; PFAM: Type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT
YP_003505919.1	PFAM: UspA domain protein; SPTR: Q8PYN7 Universal stress protein; InterPro IPR006015:IPR006016; COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; KEGG: pol:Bpro_1197 UspA; PFAM: Universal stress protein family
YP_003505920.1	PFAM: protein of unknown function DUF990; SPTR: A3IZC8 Putative ABC-2 type transport system permease protein; InterPro IPR010390; COGs: COG4587 ABC-type uncharacterized transport system permease component; KEGG: ade:Adeh_0399 ABC transporter, inner membrane subunit; PFAM: Protein of unknown function (DUF990)
YP_003505924.1	KEGG: hch:HCH_00157 QXW lectin repeat-containing protein
YP_003505925.1	TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; InterPro IPR005834:IPR006385:IPR006383; KEGG: pae:PA1143 hypothetical protein; COGs: COG0560 Phosphoserine phosphatase; SPTR: P66802 Uncharacterized protein Mb0517c; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like; HAD-superfamily subfamily IB hydrolase, TIGR01490
YP_003505926.1	KEGG: AGAP009786-PA; COGs: COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN; SPTR: Q7Q1H5 AGAP009786-PA; TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; InterPro IPR002376:IPR001555:IPR004607; PFAM: Formyl transferase; TIGRFAM: phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent
YP_003505927.1	TIGRFAM: phosphoribosylamine/glycine ligase; PRIAM: Phosphoribosylamine--glycine ligase; PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201; InterPro IPR003806:IPR000115:IPR011761; KEGG: pca:Pcar_2231 phosphoribosylamine--glycine ligase; COGs: COG0151 Phosphoribosylamine-glycine ligase; SPTR: A1HSW5 Phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N domain; Phosphoribosylglycinamide synthetase, C domain; TIGRFAM: phosphoribosylamine--glycine ligase
YP_003505928.1	PFAM: inositol monophosphatase; SPTR: A3EQI5 Archaeal fructose-1,6-bisphosphatase; KEGG: ppd:Ppro_0018 inositol monophosphatase; COGs: COG0483 fructose-1 6-bisphosphatase of inositol monophosphatase family; InterPro IPR000760:IPR001220; PFAM: Inositol monophosphatase family
YP_003505929.1	TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; Methyltransferase type 12; InterPro IPR007848:IPR013217:IPR002052:IPR004556; KEGG: mxa:MXAN_4908 putative protein methyltransferase HemK; COGs: COG2890 Methylase of polypeptide chain release factors; SPTR: A0Z9B6 Protoporphyrinogen oxidase; PFAM: Methyltransferase small domain; TIGRFAM: protein-(glutamine-N5) methyltransferase, release factor-specific; HemK family putative methylases
YP_003505930.1	PFAM: single-stranded nucleic acid binding R3H domain protein; SMART: single-stranded nucleic acid binding R3H domain protein; InterPro IPR001374; KEGG: scl:sce2518 RNA-binding protein; COGs: COG1847 RNA-binding protein; SPTR: A7B003 Putative uncharacterized protein; PFAM: R3H domain
YP_003505931.1	PFAM: 60 kDa inner membrane insertion protein; SPTR: Q9RSH5 Membrane protein oxaA; InterPro IPR001708; COGs: COG0706 Preprotein translocase subunit YidC; KEGG: sat:SYN_01014 60 kDa inner membrane protein; PFAM: 60Kd inner membrane protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family, C-terminal domain
YP_003505932.1	PFAM: protein of unknown function DUF37; SPTR: Q5SL49 UPF0161 protein TTHA0444; InterPro IPR002696; COGs: COG0759 conserved hypothetical protein; KEGG: bcb:BCB4264_A4918 conserved hypothetical protein TIGR00278; PFAM: Domain of unknown function DUF37; TIGRFAM: conserved hypothetical protein TIGR00278
YP_003505933.1	TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; InterPro IPR000100; KEGG: azo:azo3991 ribonuclease P; COGs: COG0594 RNase P protein component; SPTR: Q7X5K8 Ribonuclease P protein component; PFAM: Ribonuclease P; TIGRFAM: ribonuclease P protein component, eubacterial
YP_003505934.1	TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; InterPro IPR000271; KEGG: sus:Acid_1093 50S ribosomal protein L34P; SPTR: Q9RSH2 50S ribosomal protein L34; PFAM: Ribosomal protein L34; TIGRFAM: ribosomal protein L34, bacterial type
YP_003505935.1	PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593; KEGG: met:M446_2309 ABC transporter related; COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; SPTR: A0NNM9 ABC branched amino acid transporter family, ATPase subunit; PFAM: ABC transporter
YP_003505936.1	PFAM: AMP-dependent synthetase and ligase; SPTR: A4TXS6 AMP-dependent synthetase and ligase; InterPro IPR000873; COGs: COG1022 Long-chain acyl-CoA synthetase (AMP-forming); KEGG: dal:Dalk_3803 AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme
YP_003505937.1	PFAM: inner-membrane translocator; SPTR: A6AZ51 Branched-chain amino acid ABC-type transport system, permease component; InterPro IPR001851; COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; KEGG: vpa:VPA1151 putative ABC transporter, membrane spanning protein; PFAM: Branched-chain amino acid transport system / permease component
YP_003505938.1	PFAM: inner-membrane translocator; SPTR: A6EZ42 Inner-membrane translocator; InterPro IPR001851; COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; KEGG: bpt:Bpet1128 high-affinity branched-chain amino acid transport system permease protein; PFAM: Branched-chain amino acid transport system / permease component
YP_003505939.1	SPTR: A6EZ41 Extracellular ligand-binding receptor; COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; KEGG: rfr:Rfer_4065 extracellular ligand-binding receptor
YP_003505940.1	PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593:IPR017871; KEGG: mag:amb3593 ABC-type branched-chain amino acid transport systems, ATPase component; COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; SPTR: A4TXT0 Branched chain amino acid ABC transporter, ATP-binding protein; PFAM: ABC transporter
YP_003505941.1	SPTR: Q8TN95 Putative uncharacterized protein; KEGG: gdi:GDI3054 putative phenylacetic acid degradation protein PaaD; PFAM: protein of unknown function DUF59; InterPro IPR002744; COGs: COG2151 metal-sulfur cluster biosynthetic protein; PFAM: Domain of unknown function DUF59; TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit
YP_003505943.1	PFAM: regulatory protein MarR; transcriptional regulator PadR family protein; SMART: regulatory protein MarR; InterPro IPR000835:IPR005149; KEGG: scl:sce8982 MarR family transcriptional regulator; SPTR: A4KJ81 Putative uncharacterized protein; PFAM: MarR family
YP_003505944.1	TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; InterProIPR001411:IPR001958:IPR011701:IPR007114:IPR 004638; KEGG: mxa:MXAN_0105 drug resistance transporter, EmrB/QacA family; COGs: COG2814 Arabinose efflux permease; SPTR: A3VM32 Putative multidrug-efflux transporter; PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily
YP_003505945.1	PRIAM: Succinate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; InterPro IPR015590:IPR016160; KEGG: afr:AFE_1546 succinate-semialdehyde dehydrogenase, putative; COGs: COG1012 NAD-dependent aldehyde dehydrogenase; SPTR: A4U2G2 Succinate-semialdehyde dehydrogenase [NADP+; PFAM: Aldehyde dehydrogenase family; TIGRFAM: succinate-semialdehyde dehydrogenase
YP_003505946.1	PFAM: Peptidase M23; SPTR: A5PDJ9 Putative uncharacterized protein; InterPro IPR016047; COGs: COG0739 Membrane protein related to metalloendopeptidase; KEGG: sml:Smlt3998 putative endopeptidase; PFAM: Peptidase family M23
YP_003505947.1	PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: A3YCI8 Transcriptional regulator; InterPro IPR000847:IPR005119; COGs: COG0583 Transcriptional regulator; KEGG: transcriptional regulator protein; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family
YP_003505948.1	PFAM: extracellular solute-binding protein family 1; SPTR: P76108 Putative ABC transporter periplasmic-binding protein ydcS; InterPro IPR001188:IPR006059; COGs: COG0687 Spermidine/putrescine-binding periplasmic protein; KEGG: ppf:Pput_4236 extracellular solute-binding protein; PFAM: Bacterial extracellular solute-binding protein
YP_003505949.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; InterPro IPR003439:IPR013611:IPR003593:IPR017871; KEGG: pen:PSEEN1241 ABC transporter, ATP-binding protein; COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; SPTR: P77795 Uncharacterized ABC transporter ATP-binding protein ydcT; PFAM: ABC transporter; TOBE domain; TIGRFAM: spermidine/putrescine ABC transporter ATP-binding subunit
YP_003505950.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: P77156 Inner membrane ABC transporter permease protein ydcU; InterPro IPR000515; COGs: COG1176 ABC-type spermidine/putrescine transport system permease component I; KEGG: rlt:Rleg2_3425 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003505951.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: P0AFS0 Inner membrane ABC transporter permease protein ydcV; InterPro IPR000515; COGs: COG1177 ABC-type spermidine/putrescine transport system permease component II; KEGG: pen:PSEEN1239 ABC transporter, permease protein; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003505952.1	PRIAM: Aminobutyraldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; InterPro IPR015590:IPR016160; KEGG: aha:AHA_3818 gamma-aminobutyraldehyde dehydrogenase; COGs: COG1012 NAD-dependent aldehyde dehydrogenase; SPTR: A8GHZ8 Gamma-aminobutyraldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase family; TIGRFAM: 1-pyrroline dehydrogenase
YP_003505953.1	PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; InterPro IPR006674:IPR003607; KEGG: bra:BRADO3875 putative guanosine polyphosphate pyrophosphohydrolases/synthetases; COGs: COG0317 Guanosine polyphosphate pyrophosphohydrolase/synthetase; SPTR: A0YYY4 Putative uncharacterized protein; PFAM: HD domain
YP_003505954.1	PFAM: FAD dependent oxidoreductase; SPTR: A8DJI4 FAD dependent oxidoreductase; InterPro IPR006076; COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); KEGG: FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase
YP_003505957.1	PFAM: aminotransferase class-III; SPTR: A2WH22 Glutamate-1-semialdehyde aminotransferase; InterPro IPR005814; COGs: COG0001 Glutamate-1-semialdehyde aminotransferase; KEGG: bcj:BCAM2784 putative aminotransferase; PFAM: Aminotransferase class-III
YP_003505958.1	PFAM: GCN5-related N-acetyltransferase; InterPro IPR000182; KEGG: ccs:CCNA_03676 GNAT acetyltranferase protein; SPTR: P50858 Aminoglycoside N(6')-acetyltransferase type 1; PFAM: Acetyltransferase (GNAT) family
YP_003505959.1	PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; InterPro IPR013105:IPR013026; KEGG: pca:Pcar_1474 hypothetical protein; SPTR: A3ZQA2 Putative uncharacterized protein; PFAM: Tetratricopeptide repeat
YP_003505960.1	PFAM: Amidohydrolase 3; amidohydrolase; SPTR: A1HLV8 Amidohydrolase 3; InterPro IPR006680:IPR013108; COGs: COG1574 metal-dependent hydrolase with the TIM-barrel fold; KEGG: oan:Oant_3788 amidohydrolase 3; PFAM: Amidohydrolase family
YP_003505961.1	PFAM: extracellular solute-binding protein family 5; SPTR: A5WXX3 AgaA; InterPro IPR000914; COGs: COG0747 ABC-type dipeptide transport system periplasmic component; KEGG: bxe:Bxe_B1961 ABC peptide transporter, periplasmic ligand binding protein; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle
YP_003505962.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: P94312 Dipeptide transport system permease protein dppC; InterPro IPR000515; COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; KEGG: bpt:Bpet2850 ABC transporter inner membrane protein; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003505963.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A0P1D1 ABC transporter, membrane spanning protein (Dipeptide); InterPro IPR000515; COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; KEGG: mes:Meso_1505 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003505964.1	PFAM: thioesterase superfamily protein; SPTR: A2WGW6 Putative uncharacterized protein; InterPro IPR006683:IPR003736; COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; KEGG: aav:Aave_2878 uncharacterized domain 1; PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1
YP_003505965.1	PFAM: ADP-ribosylation/Crystallin J1; SPTR: A4AD48 ADP-ribosylglycohydrolase; InterPro IPR005502; COGs: COG1397 ADP-ribosylglycohydrolase; KEGG: pfo:Pfl01_3893 ADP-ribosylation/crystallin J1; PFAM: ADP-ribosylglycohydrolase
YP_003505966.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A4AKA0 Binding-protein-dependent transport permease; InterPro IPR000515; COGs: COG0395 ABC-type sugar transport system permease component; KEGG: bha:BH3847 ABC transporter (permease); PFAM: Binding-protein-dependent transport system inner membrane component
YP_003505967.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: B5IRR6 ABC transporter, permease protein, putative; InterPro IPR000515; COGs: COG1175 ABC-type sugar transport systems permease components; KEGG: dde:Dde_3658 glucose transport system permease protein; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003505968.1	PFAM: extracellular solute-binding protein family 1; SPTR: A4AJ89 Bacterial extracellular solute-binding protein; InterPro IPR006059; COGs: COG1653 ABC-type sugar transport system periplasmic component; KEGG: dde:Dde_3657 sugar ABC transporter, substrate-binding protein; PFAM: Bacterial extracellular solute-binding protein
YP_003505969.1	PFAM: ROK family protein; SPTR: P16557 Xylose repressor; InterPro IPR000600; COGs: COG1940 Transcriptional regulator/sugar kinase; KEGG: bha:BH2758 transcriptional repressor of the xylose operon; PFAM: MarR family; ROK family
YP_003505970.1	TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; InterPro IPR003732; KEGG: ade:Adeh_0179 D-tyrosyl-tRNA deacylase; COGs: COG1490 D-Tyr-tRNAtyr deacylase; SPTR: Q5SJQ9 D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-Tyr-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase
YP_003505971.1	TIGRFAM: degV family protein; PFAM: DegV family protein; InterPro IPR003797; KEGG: bcy:Bcer98_1648 DegV family protein; COGs: COG1307 conserved hypothetical protein; SPTR: A8CTV0 DegV family protein; PFAM: Uncharacterised protein, DegV family COG1307; TIGRFAM: EDD domain protein, DegV family
YP_003505972.1	TIGRFAM: degV family protein; PFAM: DegV family protein; InterPro IPR003797:IPR001555; KEGG: bcy:Bcer98_1648 DegV family protein; COGs: COG1307 conserved hypothetical protein; SPTR: Q9RSY3 UPF0230 protein DR_1986; PFAM: Uncharacterised protein, DegV family COG1307; TIGRFAM: EDD domain protein, DegV family
YP_003505973.1	TIGRFAM: D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; amino acid-binding ACT domain protein; InterPro IPR006139:IPR002912:IPR006140:IPR006236; KEGG: glo:Glov_2087 D-3-phosphoglycerate dehydrogenase; COGs: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenase; SPTR: O29445 D-3-phosphoglycerate dehydrogenase; PFAM: ACT domain; D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; TIGRFAM: D-3-phosphoglycerate dehydrogenase
YP_003505974.1	PFAM: aminotransferase class V; SPTR: A3EWA6 Serine-pyruvate aminotransferase; InterPro IPR000192; COGs: COG0075 Serine-pyruvate aminotransferase/ aspartate aminotransferase; KEGG: sus:Acid_1660 phosphoserine aminotransferase / L-aspartate aminotransferase; PFAM: Aminotransferase class-V
YP_003505975.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; SPTR: A3VBL8 Oxidoreductase, short-chain dehydrogenase/reductase family protein; InterPro IPR002347:IPR002424:IPR002198:IPR013968; COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; KEGG: pla:Plav_0391 short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase
YP_003505976.1	TIGRFAM: 4-hydroxybenzoate polyprenyltransferase; PFAM: UbiA prenyltransferase; SPTR: A1HNK5 4-hydroxybenzoate polyprenyltransferase, putative; KEGG: bha:BH1650 4-hydroxybenzoate octaprenyltransferase; COGs: COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferase; InterPro IPR000537:IPR006371; PFAM: UbiA prenyltransferase family; TIGRFAM: putative 4-hydroxybenzoate polyprenyltransferase
YP_003505977.1	PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; InterPro IPR001763:IPR001307; KEGG: hch:HCH_04507 rhodanese-related sulfurtransferase; COGs: COG2897 Rhodanese-related sulfurtransferase; SPTR: A0ZHS4 Rhodanese-like protein; PFAM: Rhodanese-like domain
YP_003505978.1	TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; InterPro IPR013154:IPR013149:IPR014188; KEGG: azo:azo3317 zinc-binding alcohol dehydrogenase; COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; SPTR: A4U4H3 Alcohol dehydrogenase, zinc-containing; PFAM: Zinc-binding dehydrogenase; Alcohol dehydrogenase GroES-like domain; TIGRFAM: putative quinone oxidoreductase, YhdH/YhfP family
YP_003505979.1	TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; InterPro IPR002123:IPR004552; KEGG: bha:BH1635 hypothetical protein; COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; SPTR: A1HTW7 1-acyl-sn-glycerol-3-phosphate acyltransferases; PFAM: Acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases
YP_003505980.1	PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; InterPro IPR000119; KEGG: bcb:BCB4264_A1566 DNA-binding protein HU; COGs: COG0776 Bacterial nucleoid DNA-binding protein; SPTR: P19436 DNA-binding protein HU; PFAM: Bacterial DNA-binding protein
YP_003505981.1	KEGG: scl:sce0333 hypothetical protein; SPTR: A1ZGI2 Putative uncharacterized protein
YP_003505982.1	PRIAM: NADH dehydrogenase; PFAM: nitroreductase; InterPro IPR000415; KEGG: pnu:Pnuc_1646 nitroreductase; COGs: COG0778 Nitroreductase; SPTR: Q60049 NADH dehydrogenase; PFAM: Nitroreductase family
YP_003505983.1	PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; InterPro IPR002942:IPR006145:IPR000748; KEGG: bcy:Bcer98_3369 pseudouridine synthase; COGs: COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase; SPTR: A1HLV7 Pseudouridine synthase; PFAM: S4 domain; RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase family
YP_003505986.1	SPTR: A6MNA4 Putative replication protein
YP_003505992.1	KEGG: bcb:BCB4264_A3245 transcriptional regulator, ArsR family
YP_003505993.1	PFAM: major facilitator superfamily MFS_1; InterPro IPR011701; KEGG: mxa:MXAN_4533 major facilitator family transporter; SPTR: A0Z9Q5 Putative uncharacterized protein; PFAM: Major Facilitator Superfamily
YP_003505994.1	TIGRFAM: ATP phosphoribosyltransferase; PRIAM: ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase catalytic region; InterPro IPR013820; KEGG: pca:Pcar_2689 ATP phosphoribosyltransferase catalytic subunit; COGs: COG0040 ATP phosphoribosyltransferase; SPTR: Q5SM15 ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase
YP_003505995.1	PFAM: aldo/keto reductase; SPTR: A6EJN1 Putative oxidoreductase; InterPro IPR001395; COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); KEGG: sfu:Sfum_0298 aldo/keto reductase; PFAM: Aldo/keto reductase family
YP_003505996.1	PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; SPTR: A6CQ11 Quinone oxidoreductase; InterPro IPR013154:IPR013149:IPR002364; COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; KEGG: bcz:BCZK1920 quinone oxidoreductase; PFAM: Zinc-binding dehydrogenase; Alcohol dehydrogenase GroES-like domain
YP_003505997.1	PRIAM: tRNA guanosine-2'-O-methyltransferase; PFAM: tRNA/rRNA methyltransferase (SpoU); InterPro IPR001537; KEGG: aeh:Mlg_0536 tRNA guanosine-2'-O-methyltransferase; COGs: COG0566 rRNA methylase; SPTR: A3IM41 RRNA methylase SpoU; PFAM: SpoU rRNA Methylase family
YP_003505998.1	PFAM: VanW family protein; SPTR: A1HTH4 VanW family protein; InterPro IPR007391; COGs: COG2720 Uncharacterized vancomycin resistance protein; KEGG: bce:BC0606 vancomycin B-type resistance protein VanW; PFAM: VanW like protein
YP_003505999.1	PFAM: transglutaminase domain protein; transglutaminase domain protein; SMART: transglutaminase domain protein; InterPro IPR013589:IPR002931; KEGG: cak:Caul_2196 transglutaminase domain-containing protein; COGs: COG1305 Transglutaminase-like protein; SPTR: A7CSA8 Transglutaminase domain protein; PFAM: Bacterial transglutaminase-like N-terminal region; Transglutaminase-like superfamily
YP_003506000.1	COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR002139:IPR011611:IPR011877; KEGG: bur:Bcep18194_C7623 ribokinase; PFAM: PfkB domain protein; SPTR: A7CMJ7 Ribokinase; TIGRFAM: ribokinase; PFAM: pfkB family carbohydrate kinase; TIGRFAM: ribokinase
YP_003506001.1	PRIAM: Ribosylpyrimidine nucleosidase; PFAM: Inosine/uridine-preferring nucleoside hydrolase; InterPro IPR001910:IPR015910; KEGG: rsq:Rsph17025_1107 inosine/uridine-preferring nucleoside hydrolase; COGs: COG1957 Inosine-uridine nucleoside N-ribohydrolase; SPTR: A3V6K9 Inosine-uridine preferring nucleoside hydrolase; PFAM: Inosine-uridine preferring nucleoside hydrolase
YP_003506002.1	KEGG: met:M446_0661 hypothetical protein
YP_003506003.1	TIGRFAM: alanine racemase; PRIAM: Alanine racemase; PFAM: alanine racemase domain protein; InterPro IPR000821:IPR011079:IPR001608; KEGG: bcy:Bcer98_1563 alanine racemase; COGs: COG0787 Alanine racemase; SPTR: Q8ELK1 Alanine racemase 2; PFAM: Alanine racemase, N-terminal domain; Alanine racemase, C-terminal domain; TIGRFAM: alanine racemase
YP_003506005.1	SPTR: A0YAV8 Acetyltransferase, GNAT family protein; COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; KEGG: mxa:MXAN_1062 acetyltransferase, GNAT family
YP_003506006.1	TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; InterPro IPR001453; KEGG: molybdenum cofactor synthesis domain protein; COGs: COG0521 Molybdopterin biosynthesis protein; SPTR: B2YI79 Molybdopterin biosynthesis enzyme; PFAM: Probable molybdopterin binding domain; TIGRFAM: molybdenum cofactor synthesis domain
YP_003506008.1	PFAM: MMPL domain protein; SPTR: A3I6K8 Transporter; InterPro IPR004869:IPR000731; COGs: COG2409 drug exporter of the RND superfamily; KEGG: bcy:Bcer98_1012 transporter; PFAM: MMPL family
YP_003506009.1	PFAM: Threonyl/alanyl tRNA synthetase SAD; SPTR: A6BHW2 Putative uncharacterized protein; InterPro IPR012947:IPR002318; COGs: COG2872 metal-dependent hydrolase related to alanyl-tRNA synthetase HxxxH domain; KEGG: sus:Acid_1476 alanyl-tRNA synthetase; PFAM: Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetases class II (A)
YP_003506010.1	TIGRFAM: ATP-dependent metalloprotease FtsH; PRIAM: Microtubule-severing ATPase; PFAM: peptidase M41; peptidase M41 FtsH extracellular; AAA ATPase central domain protein; InterProIPR011546:IPR000642:IPR003959:IPR003593:IPR 003960:IPR005936; SPTR: A1HRR8 ATP-dependent metalloprotease FtsH; KEGG: eba:ebA4823 cell division protein; COGs: COG0465 ATP-dependent Zn protease; SMART: AAA ATPase; PFAM: Peptidase family M41; FtsH Extracellular; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent metalloprotease FtsH
YP_003506011.1	TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70; InterPro IPR001023:IPR013126:IPR012725; KEGG: Hsp70-type chaperone; COGs: COG0443 Molecular chaperone; SPTR: Q72IK5 Chaperone protein dnaK; PFAM: Hsp70 protein; TIGRFAM: chaperone protein DnaK
YP_003506012.1	PFAM: GrpE protein; SPTR: Q8L2F3 Protein grpE; InterPro IPR000740; COGs: COG0576 Molecular chaperone GrpE (heat shock protein); KEGG: Os02g0612000; hypothetical protein ; K03687 molecular chaperone GrpE; PFAM: GrpE
YP_003506013.1	PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; InterPro IPR003095:IPR002939:IPR001623; KEGG: afr:AFE_3102 curved DNA-binding protein; COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; SPTR: Q56237 Chaperone protein dnaJ 2; PFAM: DnaJ C terminal region; DnaJ domain
YP_003506014.1	KEGG: acb:A1S_3013 hypothetical protein; SPTR: A6EIW0 Putative uncharacterized protein
YP_003506015.1	KEGG: sfu:Sfum_1349 CRISPR-associated protein, Csm1 family; COGs: COG1353 hydrolase of the HD superfamily (permuted catalytic motifs); SPTR: A4KK95 Putative uncharacterized protein; TIGRFAM: CRISPR-associated protein, Csm1 family; InterPro IPR000160:IPR013408; PFAM: HD domain; TIGRFAM: CRISPR-associated protein, Csm1 family
YP_003506016.1	TIGRFAM: CRISPR-associated protein, Csm2 family; InterPro IPR005504:IPR010149; PFAM: protein of unknown function DUF310; PFAM: Protein of unknown function (DUF310); TIGRFAM: CRISPR-associated protein, Csm2 family
YP_003506017.1	TIGRFAM: CRISPR-associated RAMP protein, Csm3 family; PFAM: protein of unknown function DUF324; InterPro IPR005537:IPR013412; KEGG: dol:Dole_0742 CRISPR-associated RAMP Csm3 family protein; COGs: COG1337 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); SPTR: Q8TPH9 Putative uncharacterized protein; PFAM: RAMP superfamily; TIGRFAM: CRISPR-associated RAMP protein, Csm3 family
YP_003506018.1	TIGRFAM: CRISPR-associated RAMP protein, Csm4 family; SPTR: A6DE73 Putative uncharacterized protein; InterPro IPR005510; COGs: COG1567 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); KEGG: neu:NE0120 hypothetical protein; PFAM: RAMP superfamily; TIGRFAM: CRISPR-associated RAMP protein, Csm4 family
YP_003506019.1	TIGRFAM: CRISPR-associated RAMP protein, Csm5 family; SPTR: A1HM60 CRISPR-associated RAMP protein, Csm5 family; InterPro IPR010173; COGs: COG1332 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); KEGG: net:Neut_2220 CRISPR-associated RAMP Csm5 family protein; TIGRFAM: CRISPR-associated RAMP protein, Csm5 family
YP_003506020.1	PFAM: Rv0623 family protein transcription factor; InterPro IPR011660; KEGG: rpc:RPC_1343 Rv0623-like transcription factor; SPTR: A2VJ91 Putative uncharacterized protein; PFAM: Rv0623-like transcription factor
YP_003506021.1	PFAM: PilT protein domain protein; SPTR: A3Z442 Putative uncharacterized protein; InterPro IPR002716; COGs: COG3742 conserved hypothetical protein; KEGG: nha:Nham_4577 PilT protein-like; PFAM: PIN domain
YP_003506022.1	TIGRFAM: CRISPR-associated protein Cas6; InterPro IPR010156; COGs: COG5551 conserved hypothetical protein; SPTR: A0YIK9 Putative uncharacterized protein; PFAM: Uncharacterized conserved protein (DUF2276); TIGRFAM: CRISPR-associated protein Cas6
YP_003506023.1	TIGRFAM: CRISPR-associated protein, TIGR02710 family; InterPro IPR014082; KEGG: bpt:Bpet4246 hypothetical protein; PFAM: CRISPR-associated protein (Cas_Cas02710); TIGRFAM: CRISPR-associated protein, TIGR02710 family
YP_003506024.1	TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; InterPro IPR002729; KEGG: msu:MS0981 hypothetical protein; COGs: COG1518 Uncharacterized protein predicted to be involved in DNA repair; SPTR: A1HM55 CRISPR-associated protein Cas1; PFAM: Protein of unknown function DUF48; TIGRFAM: CRISPR-associated protein Cas1
YP_003506025.1	TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; InterPro IPR003799; KEGG: sfu:Sfum_1356 CRISPR-associated protein Cas2; SPTR: A0YRL5 Putative uncharacterized protein; PFAM: Uncharacterized ACR, COG1343; TIGRFAM: CRISPR-associated protein Cas2
YP_003506027.1	TIGRFAM: CRISPR-associated protein, TIGR02710 family; InterPro IPR014082; KEGG: sat:SYN_02245 putative cytoplasmic protein; SPTR: A1HM57 Putative uncharacterized protein; PFAM: CRISPR-associated protein (Cas_Cas02710); TIGRFAM: CRISPR-associated protein, TIGR02710 family
YP_003506028.1	PFAM: periplasmic binding protein; SPTR: A6C0M4 Periplasmic binding protein; InterPro IPR002491; COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; KEGG: rfr:Rfer_2621 periplasmic binding protein; PFAM: Periplasmic binding protein
YP_003506029.1	PFAM: transport system permease protein; ABC-3 protein; SPTR: A8CQL2 Transport system permease protein; InterPro IPR000522:IPR001626; COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; KEGG: dac:Daci_2793 transport system permease protein; PFAM: FecCD transport family
YP_003506030.1	PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593:IPR017871; KEGG: eca:ECA1073 iron-dicitrate transporter ATP-binding subunit; COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; SPTR: A3SLD9 Iron ABC transporter, ATP-binding protein; PFAM: ABC transporter
YP_003506032.1	SPTR: A4U8S8 Putative ABC transporter substrate binding protein; COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; KEGG: scl:sce7441 putative periplasmic substrate-binding protein
YP_003506033.1	PFAM: Phosphoglycerate mutase; SPTR: A7CF70 Phosphoglycerate mutase; InterPro IPR013078:IPR001345; COGs: COG0406 Fructose-2 6-bisphosphatase; KEGG: rpi:Rpic_0374 phosphoglycerate mutase; PFAM: Phosphoglycerate mutase family
YP_003506034.1	PRIAM: Adenosylcobinamide-phosphate guanylyltransferase; PFAM: cobalbumin biosynthesis protein; InterPro IPR003203; KEGG: nar:Saro_0322 adenosylcobinamide kinase; COGs: COG2087 Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase; SPTR: A1HPW6 Adenosylcobinamide-phosphate guanylyltransferase; PFAM: Cobinamide kinase / cobinamide phosphate guanyltransferase
YP_003506035.1	TIGRFAM:nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; PRIAM: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; InterPro IPR003200:IPR017846; KEGG: gbm:Gbem_3813 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; COGs: COG2038 NaMN:DMB phosphoribosyltransferase; SPTR: Q7SIC7 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; PFAM: Phosphoribosyltransferase; TIGRFAM: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
YP_003506036.1	KEGG: similar to mitochondrial protein of bilaterial origin like (2H598C); SPTR: A1ZF07 Putative orphan protein
YP_003506037.1	PFAM: cobalamin-5-phosphate synthase CobS; SPTR: Q9RYR9 Cobalamin synthase; InterPro IPR003805; COGs: COG0368 Cobalamin-5-phosphate synthase; KEGG: hha:Hhal_1856 cobalamin synthase; PFAM: Cobalamin-5-phosphate synthase; TIGRFAM: cobalamin 5'-phosphate synthase/cobalamin synthase
YP_003506041.1	PFAM: Cytochrome b/b6 domain; SPTR: Q703H8 Cytochrome b; InterPro IPR005797:IPR005798; COGs: COG1290 Cytochrome b subunit of the bc complex; KEGG: gme:Gmet_1923 cytochrome b/b6-like; PFAM: Cytochrome b(N-terminal)/b6/petB
YP_003506042.1	PFAM: Rieske [2Fe-2S] domain protein; SPTR: A4AKN6 Rieske iron-sulphur component of ubiQ-cytB reductase; InterPro IPR005805:IPR005806; COGs: COG0723 Rieske Fe-S protein; KEGG: bra:BRADO3898 hypothetical protein; PFAM: Rieske [2Fe-2S] domain
YP_003506044.1	PFAM: cytochrome c class I; SPTR: A6GLS3 Cytochrome c oxidase subunit 2; InterPro IPR003088:IPR009056; COGs: COG2010 Cytochrome c mono- and diheme variants; KEGG: cti:RALTA_A0287 cytochrome c oxidase polypeptide II precursor (cytochrome AA3 subunit 2) transmembrane protein; PFAM: Cytochrome c
YP_003506045.1	PFAM: Xylose isomerase domain protein TIM barrel; SPTR: B6YWM5 Putative uncharacterized protein; InterPro IPR012307; COGs: COG1082 Sugar phosphate isomerase/epimerase; KEGG: gbm:Gbem_3793 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase-like TIM barrel
YP_003506046.1	KEGG: hypothetical protein
YP_003506048.1	PFAM: major facilitator superfamily MFS_1; InterPro IPR011701; KEGG: scl:sce6677 major facilitator superfamily sugar transporter; SPTR: A6ZIK5 Putative transporter; PFAM: Major Facilitator Superfamily
YP_003506049.1	COGs: COG0637 phosphatase/phosphohexomutase; InterPro IPR005833:IPR005834:IPR006402:IPR006439; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pen:PSEEN3015 hydrolase, haloacid dehalogenase-like family; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; SPTR: A0ZA01 HAD-superfamily hydrolase subfamily IA, variant 3; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
YP_003506050.1	SPTR: A8J328 S-isoprenylcysteine O-methyltransferase; COGs: COG2020 Putative protein-S-isoprenylcysteine methyltransferase; KEGG: eba:ebD26 hypothetical protein
YP_003506053.1	PFAM: ABC-2 type transporter; SPTR: A7M0U3 Putative uncharacterized protein; InterPro IPR013526:IPR013525:IPR000412; COGs: COG0842 ABC-type multidrug transport system permease component; KEGG: smt:Smal_1356 ABC-2 type transporter; PFAM: ABC-2 type transporter
YP_003506054.1	TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593:IPR017871:IPR005895; KEGG: gur:Gura_1149 ABC transporter related; COGs: COG1131 ABC-type multidrug transport system ATPase component; SPTR: A6CED0 ABC transporter, ATP-binding protein; PFAM: ABC transporter; TIGRFAM: heme ABC exporter, ATP-binding protein CcmA
YP_003506055.1	PFAM: regulatory protein TetR; InterPro IPR001647; KEGG: bcy:Bcer98_0194 TetR family transcriptional regulator; SPTR: A0NV45 Transcription regulator (TetR/AcrR family) BH1965 (Imported); PFAM: Bacterial regulatory proteins, tetR family
YP_003506056.1	PRIAM: Inorganic diphosphatase; PFAM: Inorganic pyrophosphatase; InterPro IPR008162; KEGG: hap:HAPS_1322 inorganic pyrophosphatase; COGs: COG0221 Inorganic pyrophosphatase; SPTR: P38576 Inorganic pyrophosphatase; PFAM: Inorganic pyrophosphatase
YP_003506057.1	SPTR: A0ZMK0 Putative uncharacterized protein (Fragment)
YP_003506058.1	TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB; InterPro IPR010505:IPR007197:IPR006638:IPR013483; KEGG: dal:Dalk_2755 molybdenum cofactor biosynthesis protein A; COGs: COG2896 Molybdenum cofactor biosynthesis protein; SPTR: A5CYZ0 Molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM superfamily; Molybdenum Cofactor Synthesis C; TIGRFAM: molybdenum cofactor biosynthesis protein A, bacterial
YP_003506059.1	PFAM: putative thiol-disulphide oxidoreductase DCC; SPTR: A1ZR04 Conserved protein YuxK; InterPro IPR007263; COGs: COG3011 conserved hypothetical protein; KEGG: pfl:PFL_2261 hypothetical protein; PFAM: Protein of unknown function, DUF393
YP_003506060.1	PFAM: Patatin; SPTR: A3WVN1 Patatin; InterPro IPR002641; COGs: COG1752 esterase of the alpha-beta hydrolase superfamily; KEGG: nmu:Nmul_A0164 patatin; PFAM: Patatin-like phospholipase
YP_003506061.1	TIGRFAM: dihydroorotate dehydrogenase; PRIAM: Dihydroorotate oxidase; PFAM: dihydroorotate dehydrogenase; InterPro IPR001295:IPR005719; KEGG: acp:A2cp1_2662 dihydroorotate oxidase; COGs: COG0167 Dihydroorotate dehydrogenase; SPTR: Q8DLB7 Dihydroorotate dehydrogenase; PFAM: Dihydroorotate dehydrogenase; TIGRFAM: dihydroorotate dehydrogenase, subfamily 2
YP_003506062.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; SPTR: A3HXQ9 Butyryl-CoA dehydrogenase; InterProIPR006090:IPR006092:IPR006091:IPR013107:IPR 006089; COGs: COG1960 Acyl-CoA dehydrogenase; KEGG: acp:A2cp1_2299 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA dehydrogenase, N-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, C-terminal domain
YP_003506063.1	PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; InterPro IPR003029; KEGG: bsu:BSU00630 hypothetical protein; COGs: COG1098 RNA binding protein (contains ribosomal protein S1 domain); SPTR: A6NQP1 Putative uncharacterized protein; PFAM: S1 RNA binding domain
YP_003506064.1	SPTR: A3JSD8 Enoyl-(Acyl carrier protein) reductase; KEGG: rpe:RPE_4591 enoyl-(acyl carrier protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; InterPro IPR002347:IPR002198; COGs: COG0623 Enoyl-(acyl-carrier-protein); PFAM: short chain dehydrogenase
YP_003506066.1	KEGG: sus:Acid_4718 hypothetical protein; SPTR: A3IAA1 Putative uncharacterized protein
YP_003506067.1	KEGG: pde:Pden_4705 putative transmembrane protein; SPTR: A3JYR6 Putative uncharacterized protein
YP_003506068.1	PFAM: Endonuclease/exonuclease/phosphatase; SPTR: A0YKZ5 Endonuclease/exonuclease/phosphatase; InterPro IPR005135; COGs: COG2374 extracellular nuclease; KEGG: azo:azo1484 putative extracellular nuclease; PFAM: Endonuclease/Exonuclease/phosphatase family
YP_003506069.1	KEGG: bcy:Bcer98_3344 hypothetical protein; SPTR: A6CL78 YtxJ
YP_003506070.1	PFAM: LmbE family protein; SPTR: A6CR03 Putative uncharacterized protein; InterPro IPR003737; COGs: COG2120 conserved hypothetical protein LmbE homologs; KEGG: aba:Acid345_2880 LmbE-like protein; PFAM: GlcNAc-PI de-N-acetylase
YP_003506071.1	KEGG: kpn:KPN_03266 translocation protein TolB precursor; SPTR: A4BHR6 Oligogalacturonate lyase; PFAM: WD40-like Beta Propeller Repeat
YP_003506072.1	PFAM: Cupin 2 conserved barrel domain protein; SPTR: A7JXZ4 Possible pectin degradation protein; KEGG: kpn:KPN_03255 hypothetical protein; COGs: COG1917 conserved hypothetical protein contains double-stranded beta-helix domain; InterPro IPR013096; PFAM: Cupin domain
YP_003506073.1	PFAM: PfkB domain protein; SPTR: A8KP27 Kinase, PfkB family; InterPro IPR011611:IPR002173; COGs: COG0524 Sugar kinase ribokinase family; KEGG: sit:TM1040_2753 PfkB; PFAM: pfkB family carbohydrate kinase
YP_003506074.1	TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; InterPro IPR000887; KEGG: scl:sce1239 hypothetical protein; COGs: COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase; SPTR: A6CCL1 Putative uncharacterized protein; PFAM: KDPG and KHG aldolase; TIGRFAM: Entner-Doudoroff aldolase
YP_003506075.1	TIGRFAM: 2-deoxy-D-gluconate 3-dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; InterProIPR002347:IPR002424:IPR002198:IPR013968:IPR 001509:IPR011286; KEGG: mmr:Mmar10_0232 2-deoxy-D-gluconate 3-dehydrogenase; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); SPTR: P50842 2-deoxy-D-gluconate 3-dehydrogenase; PFAM: short chain dehydrogenase; TIGRFAM: 2-deoxy-D-gluconate 3-dehydrogenase
YP_003506076.1	PFAM: Myo-inositol catabolism IolB domain protein; SPTR: A1HM17 Myo-inositol catabolism IolB domain protein; InterPro IPR010669; COGs: COG3718 Uncharacterized protein involved in inositol metabolism; KEGG: sus:Acid_1480 myo-inositol catabolism IolB domain-containing protein; PFAM: Myo-inositol catabolism protein IolB
YP_003506077.1	PFAM: extracellular solute-binding protein family 1; SPTR: A6BY34 Putative sugar binding protein; InterPro IPR006059; COGs: COG1653 ABC-type sugar transport system periplasmic component; KEGG: ypb:YPTS_0531 extracellular solute-binding protein; PFAM: Bacterial extracellular solute-binding protein
YP_003506078.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A3I510 Polysaccharide ABC transporter permease; InterPro IPR000515; COGs: COG0395 ABC-type sugar transport system permease component; KEGG: bsu:BSU07120 transmembrane lipoprotein; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003506079.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: P39128 Protein lplB; InterPro IPR000515; COGs: COG4209 ABC-type polysaccharide transport system permease component; KEGG: bha:BH1065 hypothetical protein; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003506080.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; InterPro IPR000843:IPR001761; KEGG: vei:Veis_0948 periplasmic binding protein/LacI transcriptional regulator; COGs: COG1609 Transcriptional regulators; SPTR: A7CQD4 Periplasmic binding protein/LacI transcriptional regulator; PFAM: Bacterial regulatory proteins, lacI family; Periplasmic binding proteins and sugar binding domain of the LacI family
YP_003506081.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; InterPro IPR000843:IPR001761; KEGG: hch:HCH_06913 transcriptional regulator; COGs: COG1609 Transcriptional regulators; SPTR: A3UQH9 Transcriptional regulator; PFAM: Periplasmic binding proteins and sugar binding domain of the LacI family; Bacterial regulatory proteins, lacI family
YP_003506082.1	PFAM: extracellular solute-binding protein family 1; SPTR: A6AMP9 ABC-type sugar transport system, periplasmic component; InterPro IPR006059; COGs: COG1653 ABC-type sugar transport system periplasmic component; KEGG: rfr:Rfer_1099 extracellular solute-binding protein; PFAM: Bacterial extracellular solute-binding protein
YP_003506083.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A6CVW5 ABC-type sugar transport system, permease component; InterPro IPR000515; COGs: COG1175 ABC-type sugar transport systems permease components; KEGG: hch:HCH_06909 ABC-type sugar transport system, permease components; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003506084.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A6CVW4 ABC-type sugar transport system, permease component; InterPro IPR000515; COGs: COG0395 ABC-type sugar transport system permease component; KEGG: rfr:Rfer_1101 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003506085.1	PRIAM: Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; SMART: glycoside hydrolase family 10; InterPro IPR001000; KEGG: hypothetical protein; COGs: COG3693 Beta-1 4-xylanase; SPTR: Q60041 Endo-1,4-beta-xylanase B; PFAM: Glycosyl hydrolase family 10
YP_003506086.1	TIGRFAM: beta-galactosidase; PRIAM: Beta-glucosidase; PFAM: glycoside hydrolase family 1; InterPro IPR001360:IPR017736; KEGG: mxa:MXAN_6555 beta-glucosidase; COGs: COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase; SPTR: A0AC59 Putative beta-glucosidase; PFAM: Glycosyl hydrolase family 1; TIGRFAM: beta-galactosidase
YP_003506087.1	PRIAM: Xylan 1,4-beta-xylosidase; PFAM: glycoside hydrolase family 43; InterPro IPR006710; KEGG: bha:BH3683 xylan beta-1,4-xylosidase; COGs: COG3507 Beta-xylosidase; SPTR: P07129 Beta-xylosidase; PFAM: Glycosyl hydrolases family 43
YP_003506088.1	PFAM: cytochrome P450; SPTR: Q5V5P9 Cytochrome P450; InterPro IPR001128:IPR002401:IPR002403; COGs: COG2124 Cytochrome P450; KEGG: bha:BH0579 cytochrome P450 hydroxylase; PFAM: Cytochrome P450
YP_003506089.1	InterPro IPR002126; KEGG: hypothetical protein LOC752473
YP_003506090.1	KEGG: scl:sce2901 hypothetical protein; SPTR: Q5UZL3 Putative uncharacterized protein
YP_003506091.1	SPTR: A5P745 Prolyl oligopeptidase family protein; InterPro IPR002471; COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; KEGG: mxa:MXAN_5299 peptidase, S9C (acylaminoacyl-peptidase) subfamily; PFAM: Dienelactone hydrolase family
YP_003506092.1	PFAM: Heavy metal transport/detoxification protein; InterPro IPR006121; KEGG: xcv:XCV2336 copper-translocating P-type ATPase; SPTR: A3EPE8 Putative cation transport ATPase; PFAM: Heavy-metal-associated domain
YP_003506093.1	PFAM: protein of unknown function DUF156; SPTR: A4KFR7 Putative uncharacterized protein; InterPro IPR003735; COGs: COG1937 conserved hypothetical protein; KEGG: aeh:Mlg_0324 hypothetical protein; PFAM: Uncharacterised BCR, COG1937
YP_003506094.1	TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; InterProIPR000579:IPR001757:IPR006121:IPR008250:IPR 005834:IPR006403:IPR006416; KEGG: pca:Pcar_1596 copper-translocating P-type ATPase; COGs: COG2217 Cation transport ATPase; SPTR: P58341 Copper-transporting ATPase 1; PFAM: Heavy-metal-associated domain; E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; copper-(or silver)-translocating P-type ATPase
YP_003506095.1	KEGG: afe:Lferr_0211 hypothetical protein; SPTR: A2UAL1 Putative uncharacterized protein; PFAM: Predicted membrane protein (DUF2078)
YP_003506096.1	KEGG: ccv:CCV52592_0396 carboxynorspermidine decarboxylase; SPTR: Q46BC2 Putative uncharacterized protein
YP_003506099.1	TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; InterProIPR000579:IPR001757:IPR001756:IPR008250:IPR 005834:IPR001412:IPR006121:IPR006403:IPR006416; KEGG: xau:Xaut_4847 copper-translocating P-type ATPase; COGs: COG2217 Cation transport ATPase; SPTR: A3TK31 Putative cation-transporting ATPase; PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: heavy metal translocating P-type ATPase; heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-(or silver)-translocating P-type ATPase
YP_003506100.1	PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; InterPro IPR001789:IPR001867; KEGG: bha:BH3157 two-component response regulator involved in phosphate regulation; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; SPTR: A2U9W5 Two component transcriptional regulator, winged helix family; PFAM: Transcriptional regulatory protein, C terminal; Response regulator receiver domain
YP_003506101.1	PRIAM: Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; InterProIPR004358:IPR003594:IPR003660:IPR003661:IPR 005467; KEGG: gme:Gmet_2694 PAS/PAC sensor signal transduction histidine kinase; COGs: COG5002 Signal transduction histidine kinase; SPTR: A0YKL7 Sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; HAMP domain; His Kinase A (phosphoacceptor) domain
YP_003506102.1	PFAM: multicopper oxidase type 3; multicopper oxidase type 1; multicopper oxidase type 2; SPTR: A0YQP5 Laccase; InterProIPR001117:IPR011707:IPR011706:IPR002355:IPR 006311; COGs: COG2132 Putative multicopper oxidase; KEGG: multicopper oxidase type 2; PFAM: Multicopper oxidase; Multicopper oxidase; Multicopper oxidase; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence
YP_003506103.1	PFAM: protein of unknown function DUF305; SPTR: A0ZFH3 Putative uncharacterized protein; InterPro IPR005183; COGs: COG3544 conserved hypothetical protein; KEGG: scl:sce8098 hypothetical protein; PFAM: Domain of unknown function (DUF305)
YP_003506104.1	SMART: Protein-tyrosine phosphatase, low molecular weight; SPTR: A3YUQ9 Protein tyrosine phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; COGs: COG0394 Protein-tyrosine-phosphatase; InterPro IPR000106:IPR017867; KEGG: mes:Meso_3348 protein tyrosine phosphatase; PFAM: Low molecular weight phosphotyrosine protein phosphatase
YP_003506105.1	PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; InterPro IPR006047:IPR006589; KEGG: mrd:Mrad2831_1595 alpha amylase catalytic region; COGs: COG0366 Glycosidase; SPTR: A3K7L1 Alpha amylase; PFAM: Alpha amylase, C-terminal all-beta domain; Alpha amylase, catalytic domain
YP_003506106.1	PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; InterPro IPR006047:IPR006589; KEGG: noc:Noc_0218 alpha amylase, catalytic region; COGs: COG0366 Glycosidase; SPTR: A6CFW1 Alpha-amylase, amylosucrase; PFAM: Alpha amylase, catalytic domain
YP_003506108.1	KEGG: aba:Acid345_0591 outer membrane protein, OmpA/MotB family
YP_003506110.1	PFAM: regulatory protein TetR; InterPro IPR001647; KEGG: smt:Smal_0425 transcriptional regulator, TetR family; SPTR: A3X7M9 Transcriptional regulator, TetR family protein; PFAM: Bacterial regulatory proteins, tetR family
YP_003506111.1	PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; InterPro IPR001789:IPR001867; KEGG: tmz:Tmz1t_2388 heavy metal response regulator; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; SPTR: Q1B3X8 Response regulator mprA; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_003506112.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; InterProIPR004358:IPR003594:IPR003660:IPR003661:IPR 005467; KEGG: mpt:Mpe_A3149 sensor histidine kinase; COGs: COG0642 Signal transduction histidine kinase; SPTR: B8AD13 Putative uncharacterized protein; PFAM: HAMP domain; His Kinase A (phosphoacceptor) domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_003506113.1	PFAM: PilT protein domain protein; InterPro IPR002716; KEGG: gur:Gura_3493 PilT domain-containing protein; SPTR: A7CWY2 PilT protein domain protein; PFAM: PIN domain
YP_003506114.1	TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; InterPro IPR007159:IPR006339; KEGG: regulators of stationary/sporulation gene expression protein; SPTR: O28268 Putative uncharacterized protein; PFAM: SpoVT / AbrB like domain; TIGRFAM: looped-hinge helix DNA binding domain, AbrB family
YP_003506115.1	PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; SPTR: A1ZS14 Choline dehydrogenase; InterPro IPR000172:IPR007867; COGs: COG2303 Choline dehydrogenase and related flavoprotein; KEGG: pla:Plav_2644 choline dehydrogenase; PFAM: GMC oxidoreductase; GMC oxidoreductase
YP_003506116.1	TIGRFAM: GTP-binding protein TypA; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; GTP-binding protein HSR1-related; elongation factor Tu domain 2 protein; InterProIPR000795:IPR000640:IPR002917:IPR004161:IPR 006298:IPR005225; KEGG: psa:PST_0355 GTP-binding protein TypA; COGs: COG1217 membrane GTPase involved in stress response; SPTR: A1HPG5 GTP-binding protein TypA; PFAM: Elongation factor Tu GTP binding domain; Elongation factor G C-terminus; Elongation factor Tu domain 2; TIGRFAM: GTP-binding protein TypA/BipA; small GTP-binding protein domain
YP_003506117.1	PFAM: Xylose isomerase domain protein TIM barrel; SPTR: A0NN65 Putative uncharacterized protein; InterPro IPR012307; COGs: COG1082 Sugar phosphate isomerase/epimerase; KEGG: hypothetical protein; PFAM: Xylose isomerase-like TIM barrel
YP_003506118.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A8RW83 Putative uncharacterized protein; InterPro IPR000515; COGs: COG1175 ABC-type sugar transport systems permease components; KEGG: bha:BH1077 glycerol-3-phosphate ABC transporter (permease); PFAM: Binding-protein-dependent transport system inner membrane component
YP_003506119.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A8RW82 Putative uncharacterized protein; InterPro IPR000515:IPR001647; COGs: COG0395 ABC-type sugar transport system permease component; KEGG: mca:MCA1924 sugar ABC transporter, permease protein; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003506120.1	PFAM: extracellular solute-binding protein family 1; SPTR: A8RW81 Putative uncharacterized protein; InterPro IPR006059; COGs: COG1653 ABC-type sugar transport system periplasmic component; KEGG: bha:BH1079 glycerol-3-phosphate ABC transporter (glycerol-3-phosphate binding protein); PFAM: Bacterial extracellular solute-binding protein
YP_003506121.1	TIGRFAM: formyltetrahydrofolate deformylase; PFAM: formyl transferase domain protein; amino acid-binding ACT domain protein; InterPro IPR004810:IPR002912:IPR002376; KEGG: abo:ABO_1563 formyltetrahydrofolate deformylase; COGs: COG0788 Formyltetrahydrofolate hydrolase; SPTR: O34990 Formyltetrahydrofolate deformylase; PFAM: ACT domain; Formyl transferase; TIGRFAM: formyltetrahydrofolate deformylase
YP_003506122.1	PRIAM: HtrA2 peptidase; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; SPTR: A4BPL1 Periplasmic serine protease; KEGG: hha:Hhal_0718 peptidase S1 and S6, chymotrypsin/Hap; COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001940:IPR001254:IPR001478; PFAM: PDZ domain (Also known as DHR or GLGF); Trypsin
YP_003506123.1	PFAM: WD40 domain protein beta Propeller; SPTR: A6G459 WD40-like Beta Propeller protein; InterPro IPR011659; COGs: COG0823 Periplasmic component of the Tol biopolymer transport system; KEGG: gbm:Gbem_2492 peptidase S9B dipeptidylpeptidase IV domain protein; PFAM: Dipeptidyl peptidase IV (DPP IV) N-terminal region; WD40-like Beta Propeller Repeat
YP_003506124.1	TIGRFAM: adenylosuccinate synthetase; PRIAM: Adenylosuccinate synthase; PFAM: adenylosuccinate synthetase; InterPro IPR001114; SPTR: Q5SLS1 Adenylosuccinate synthetase; KEGG: Os03g0174500; hypothetical protein ; K01939 adenylosuccinate synthase; COGs: COG0104 Adenylosuccinate synthase; SMART: adenylosuccinate synthetase; PFAM: Adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthase
YP_003506125.1	PFAM: YbaK/prolyl-tRNA synthetase associated region; SPTR: A2W0X5 Putative uncharacterized protein; InterPro IPR007214; COGs: COG2606 conserved hypothetical protein; KEGG: gbm:Gbem_1948 YbaK/prolyl-tRNA synthetase associated region; PFAM: YbaK / prolyl-tRNA synthetases associated domain
YP_003506126.1	PFAM: peptidase M20; peptidase dimerisation domain protein; SPTR: A4AV67 Carboxypeptidase G2; InterPro IPR011650:IPR002933; COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; KEGG: aba:Acid345_0237 peptidase M20; PFAM: Peptidase family M20/M25/M40
YP_003506127.1	TIGRFAM: arginyl-tRNA synthetase; PRIAM: Arginine--tRNA ligase; PFAM: DALR anticodon binding domain protein; arginyl tRNA synthetase domain protein; Arginyl-tRNA synthetase, class Ic, core; InterProIPR015945:IPR005148:IPR008909:IPR001412:IPR 001278; KEGG: sus:Acid_5890 arginyl-tRNA synthetase; COGs: COG0018 Arginyl-tRNA synthetase; SPTR: Q72GE2 Arginyl-tRNA synthetase; PFAM: tRNA synthetases class I (R); DALR anticodon binding domain; Arginyl tRNA synthetase N terminal domain; TIGRFAM: arginyl-tRNA synthetase
YP_003506128.1	KEGG: ank:AnaeK_0326 transcriptional regulator, SARP family
YP_003506129.1	KEGG: pol:Bpro_1406 transcriptional activator domain
YP_003506130.1	PFAM: glutaredoxin; glutaredoxin 2; SPTR: A4KL94 Hypothetical glutaredoxin protein; InterPro IPR006662:IPR002109:IPR008554; COGs: COG0695 Glutaredoxin and related protein; KEGG: aba:Acid345_2784 glutaredoxin; PFAM: Glutaredoxin; TIGRFAM: Glutaredoxin-like protein, YruB-family
YP_003506131.1	TIGRFAM: formamidopyrimidine-DNA glycosylase; PRIAM: DNA-formamidopyrimidine glycosylase; PFAM: DNA glycosylase/AP lyase, H2TH DNA-binding; Formamidopyrimidine-DNA glycosylase catalytic domain protein; zinc finger Fpg domain protein; InterProIPR012319:IPR010663:IPR015886:IPR000214:IPR 000191; KEGG: tcx:Tcr_1921 formamidopyrimidine-DNA glycosylase; COGs: COG0266 Formamidopyrimidine-DNA glycosylase; SPTR: O50606 Formamidopyrimidine-DNA glycosylase; PFAM: Zinc finger found in FPG and IleRS; Formamidopyrimidine-DNA glycosylase N-terminal domain; Formamidopyrimidine-DNA glycosylase H2TH domain; TIGRFAM: formamidopyrimidine-DNA glycosylase (fpg)
YP_003506133.1	PFAM: Helix-turn-helix type 11 domain protein; regulatory protein DeoR; SPTR: A0ACG9 Putative transcriptional regulator; InterPro IPR001034:IPR013196; COGs: COG2378 transcriptional regulator protein; KEGG: aba:Acid345_4546 transcriptional regulator, DeoR family; PFAM: HTH domain
YP_003506134.1	PFAM: short-chain dehydrogenase/reductase SDR; SPTR: A6CNM5 Oxidoreductase, short chain dehydrogenase/reductase family protein; InterPro IPR002347:IPR002198; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); KEGG: scl:sce3666 short chain dehydrogenase; PFAM: short chain dehydrogenase
YP_003506135.1	TIGRFAM: D-alanine/D-alanine ligase; PRIAM: D-alanine--D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; protein of unknown function DUF201; InterProIPR003135:IPR011095:IPR003806:IPR011127:IPR 011761:IPR000291:IPR005905; KEGG: pst:PSPTO_4182 D-alanyl-alanine synthetase A; COGs: COG1181 D-alanine-D-alanine ligase and related ATP-grasp protein; SPTR: Q72IA9 D-alanine--D-alanine ligase; PFAM: ATP-grasp domain; D-ala D-ala ligase N-terminus; TIGRFAM: D-alanine--D-alanine ligase
YP_003506137.1	KEGG: bca:BCE_0167 ABC-type bacteriocin transporter family protein; COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; SPTR: A0YQG9 Heterocyst differentiation protein; PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: AAA ATPase; InterProIPR003439:IPR005074:IPR001140:IPR003593:IPR 017871:IPR017940; PFAM: ABC transporter transmembrane region; Peptidase C39 family; ABC transporter
YP_003506138.1	PFAM: secretion protein HlyD family protein; SPTR: A3RNT4 Type I secretion adaptor protein (HlyD family); InterPro IPR006143; COGs: COG1566 Multidrug resistance efflux pump; KEGG: afr:AFE_2692 type I secretion membrane fusion protein, HlyD family; PFAM: HlyD family secretion protein
YP_003506139.1	PFAM: regulatory protein LuxR; InterPro IPR000792; KEGG: afw:Anae109_0915 two component LuxR family transcriptional regulator; SMART: regulatory protein LuxR; PFAM: Bacterial regulatory proteins, luxR family
YP_003506142.1	PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; InterPro IPR001440:IPR013026; KEGG: glo:Glov_2533 TPR repeat-containing protein; COGs: COG3629 DNA-binding transcriptional activator of the SARP family; SPTR: B5IGG0 Archaeal ATPase family; PFAM: Tetratricopeptide repeat
YP_003506143.1	TIGRFAM: glycogen/starch synthase, ADP-glucose type; PRIAM: Starch synthase; PFAM: Starch synthase catalytic domain protein; glycosyl transferase group 1; InterPro IPR001296:IPR013534:IPR011835; KEGG: bcb:BCB4264_A4996 glycogen synthase; COGs: COG0297 Glycogen synthase; SPTR: Q5SMC5 Glycogen synthase; PFAM: Starch synthase catalytic domain; Glycosyl transferases group 1; TIGRFAM: glycogen/starch synthases, ADP-glucose type
YP_003506144.1	PFAM: AIG2 family protein; SPTR: A0YQB3 Putative uncharacterized protein; InterPro IPR009288; COGs: COG2105 conserved hypothetical protein; KEGG: stm:STM4411 putative cytoplasmic protein; PFAM: AIG2-like family
YP_003506145.1	PFAM: nitroreductase; InterPro IPR000415; KEGG: sfu:Sfum_0229 nitroreductase; SPTR: A3CX61 Nitroreductase; PFAM: Nitroreductase family; TIGRFAM: SagB-type dehydrogenase domain
YP_003506146.1	TIGRFAM: glucose-1-phosphate adenylyltransferase; PFAM: Nucleotidyl transferase; InterPro IPR005835:IPR005836:IPR011831; KEGG: sus:Acid_1105 glucose-1-phosphate adenylyltransferase; COGs: COG0448 ADP-glucose pyrophosphorylase; SPTR: Q5SMC1 Glucose-1-phosphate adenylyltransferase; PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate adenylyltransferase
YP_003506147.1	PFAM: peptidase S16 lon domain protein; SPTR: A4U2M7 ATP-dependent protease LA; InterPro IPR008269; COGs: COG1067 ATP-dependent protease; KEGG: aeh:Mlg_1517 peptidase S16, lon domain-containing protein; PFAM: Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: lon-related putative ATP-dependent protease
YP_003506148.1	PFAM: peptidase S41; SMART: peptidase S41; InterPro IPR005151; KEGG: rce:RC1_1530 carboxyl-terminal protease; COGs: COG0793 Periplasmic protease; SPTR: A3IPI9 Carboxyl-terminal protease; PFAM: Peptidase family S41
YP_003506149.1	KEGG: mxa:MXAN_5081 acyltransferase family protein; SPTR: A1ZK66 Inner membrane protein
YP_003506150.1	TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PRIAM: Asparagine synthase (glutamine-hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II; InterPro IPR001962:IPR000583:IPR006426; KEGG: wsu:WS2192 putative asparagine synthetase (glutamine-hydrolyzing); COGs: COG0367 Asparagine synthase (glutamine-hydrolyzing); SPTR: A3CX83 Asparagine synthase (Glutamine-hydrolyzing); PFAM: Glutamine amidotransferases class-II; Asparagine synthase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing)
YP_003506151.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: aba:Acid345_3307 glycosyl transferase, group 1; SPTR: A3SJ03 Probable glycosyltransferase; PFAM: glycosyl transferase group 1; PFAM: Glycosyl transferases group 1
YP_003506152.1	TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PRIAM: Asparagine synthase (glutamine-hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II; InterPro IPR001962:IPR000583:IPR006426; KEGG: aav:Aave_0961 asparagine synthase (glutamine-hydrolyzing); COGs: COG0367 Asparagine synthase (glutamine-hydrolyzing); SPTR: A7IB45 Asparagine synthase (Glutamine-hydrolyzing); PFAM: Glutamine amidotransferases class-II; Asparagine synthase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing)
YP_003506153.1	PRIAM: Glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; Cys/Met metabolism pyridoxal-phosphate-dependent protein; InterPro IPR000653:IPR001597:IPR000277; KEGG: aeh:Mlg_0663 DegT/DnrJ/EryC1/StrS aminotransferase; COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; SPTR: P15263 Pleiotropic regulatory protein; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family
YP_003506154.1	PFAM: transferase hexapeptide repeat containing protein; SPTR: A3L6J8 Bacterial transferase hexapeptide-like protein; InterPro IPR001451; COGs: COG0110 Acetyltransferase (isoleucine patch superfamily); KEGG: lch:Lcho_0290 acetyltransferase; PFAM: Bacterial transferase hexapeptide (three repeats)
YP_003506155.1	PFAM: oxidoreductase domain protein; Oxidoreductase domain; SPTR: A3SJ11 MviM protein; InterPro IPR000683:IPR004104; COGs: COG0673 dehydrogenase and related protein; KEGG: glo:Glov_1510 oxidoreductase domain protein; PFAM: Oxidoreductase family, C-terminal alpha/beta domain; Oxidoreductase family, NAD-binding Rossmann fold
YP_003506156.1	TIGRFAM: nucleotide sugar dehydrogenase; PRIAM: UDP-glucose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase ; 6-phosphogluconate dehydrogenase NAD-binding; InterProIPR014027:IPR014026:IPR001732:IPR006115:IPR 017476; KEGG: ank:AnaeK_1384 nucleotide sugar dehydrogenase; COGs: COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; SPTR: A6CP32 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase
YP_003506157.1	PFAM: glycosyl transferase group 1; SPTR: A6CP41 Putative uncharacterized protein; InterPro IPR001296; COGs: COG0438 Glycosyltransferase; KEGG: aba:Acid345_3305 glycosyl transferase, group 1; PFAM: Glycosyl transferases group 1
YP_003506158.1	SPTR: P94576 Uncharacterized protein ywoF; InterPro IPR010916; KEGG: pna:Pnap_3111 hypothetical protein
YP_003506159.1	PFAM: lipopolysaccharide biosynthesis protein; InterPro IPR003856; KEGG: pde:Pden_0846 lipopolysaccharide biosynthesis; PFAM: Chain length determinant protein
YP_003506160.1	PFAM: polysaccharide biosynthesis protein; SPTR: A3CTD1 Polysaccharide biosynthesis protein; InterPro IPR002797; COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; KEGG: reh:H16_B0030 O-antigen translocase; PFAM: Polysaccharide biosynthesis protein
YP_003506161.1	PFAM: O-antigen polymerase; InterPro IPR007016; KEGG: sus:Acid_6617 O-antigen polymerase; SPTR: A3WF85 Putative uncharacterized protein; PFAM: O-Antigen Polymerase
YP_003506162.1	PFAM: glycosyl transferase group 1; SPTR: O32272 Putative teichuronic acid biosynthesis glycosyltransferase tuaC; InterPro IPR001296; COGs: COG0438 Glycosyltransferase; KEGG: bsu:BSU35590 biosynthesis of teichuronic acid; PFAM: Glycosyl transferases group 1
YP_003506163.1	KEGG: bav:BAV0088 lipopolysaccharide biosynthesis protein
YP_003506164.1	PFAM: Ig domain protein group 2 domain protein; SMART: Ig domain protein group 2 domain protein; InterPro IPR003343:IPR010916; KEGG: mxa:MXAN_5490 hypothetical protein; SPTR: A1ZK61 Cell surface protein, putative; PFAM: Bacterial Ig-like domain (group 2)
YP_003506165.1	PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; SPTR: A7K3E6 Pilin glycosylation protein; PRIAM: Glutamine--scyllo-inositol transaminase; COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653:IPR001597; KEGG: sat:SYN_02688 UDP-bacillosamine synthetase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family
YP_003506166.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; SPTR: A0YZB2 Putative sugar nucleotide epimerase dehydratase protein; InterProIPR013120:IPR002225:IPR003869:IPR005913:IPR 001509; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; KEGG: mgm:Mmc1_2166 NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase family
YP_003506167.1	PRIAM: Galactose oxidase; PFAM: Domain of unknown function DUF1929; Kelch repeat protein; Fibronectin type III domain protein; PA14 domain protein; Kelch repeat-containing protein; InterProIPR011498:IPR015202:IPR003961:IPR011658:IPR 006652; SPTR: A8EDL8 Putative galactose oxidase; KEGG: mxa:MXAN_5265 kelch domain protein; SMART: PA14 domain protein; Kelch repeat-containing protein; Fibronectin type III domain protein; PFAM: Kelch motif; Fibronectin type III domain; Domain of unknown function (DUF1929); PA14 domain
YP_003506168.1	KEGG: pna:Pnap_3111 hypothetical protein; SPTR: A6C2D0 Parallel beta-helix repeat protein
YP_003506169.1	PFAM: glycosyl transferase family 4; SPTR: A1HRC3 Glycosyl transferase, family 4; InterPro IPR000715; COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; KEGG: bsu:BSU35530 teichoic acid linkage unit synthesis (synthesis of undecaprenylpyrophosphate-N-aetylglucosamine); PFAM: Glycosyl transferase family 4
YP_003506171.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; dTDP-4-dehydrorhamnose reductase; NmrA family protein; SPTR: Q5UXM4 NADH dehydrogenase/oxidoreductase-like protein; InterProIPR013120:IPR002225:IPR005913:IPR008030:IPR 001509; COGs: COG0702 nucleoside-diphosphate-sugar epimerase; KEGG: ppd:Ppro_0490 NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase family
YP_003506172.1	PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp; SPTR: A4AEI3 Transcriptional regulator, Crp/Fnr family protein; KEGG: scl:sce3757 CRP family global nitrogen regulatory protein; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR001808:IPR000595:IPR012318; PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain
YP_003506173.1	PFAM: regulatory protein MerR; cobalamin B12-binding domain protein; SMART: regulatory protein MerR; InterPro IPR000551:IPR006158; KEGG: bba:Bd0931 MerR family transcriptional regulator; COGs: COG0789 transcriptional regulator protein; SPTR: A6GDQ0 B12 binding domain/transcriptional regulator, MerR family protein; PFAM: B12 binding domain; MerR family regulatory protein
YP_003506174.1	PFAM: Methyltransferase type 11; UbiE/COQ5 methyltransferase; Methyltransferase type 12; putative RNA methylase; SPTR: Q9HKG9 Putative uncharacterized protein Ta0630; InterPro IPR013216:IPR004033:IPR013217:IPR000241; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; KEGG: mno:Mnod_8065 methyltransferase type 11; PFAM: Methyltransferase domain
YP_003506175.1	PRIAM: Phytoene synthase; PFAM: Squalene/phytoene synthase; InterPro IPR002060; KEGG: afw:Anae109_4080 squalene/phytoene synthase; COGs: COG1562 Phytoene/squalene synthetase; SPTR: P37270 Phytoene synthase; PFAM: Squalene/phytoene synthase
YP_003506176.1	PFAM: CopG domain protein DNA-binding domain protein; InterPro IPR002145; KEGG: gme:Gmet_A3570 CopG-like DNA-binding protein; SPTR: A4BU88 Putative uncharacterized protein; PFAM: Ribbon-helix-helix protein, copG family
YP_003506177.1	TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; InterPro IPR007712:IPR012753; KEGG: rru:Rru_A3196 plasmid stabilization system protein; COGs: COG2026 Cytotoxic translational repressor of toxin-antitoxin stability system; SPTR: A7BAH6 Putative uncharacterized protein; PFAM: Plasmid stabilisation system protein; TIGRFAM: addiction module toxin, RelE/StbE family
YP_003506178.1	COGs: COG1233 Phytoene dehydrogenase and related protein; InterPro IPR003042:IPR000759:IPR006076:IPR002937; KEGG: acp:A2cp1_3444 amine oxidase; SPTR: A0YY35 FAD dependent oxidoreductase; PFAM: amine oxidase; FAD dependent oxidoreductase; PFAM: Flavin containing amine oxidoreductase
YP_003506179.1	PFAM: Lycopene beta and epsilon cyclase; FAD dependent oxidoreductase; SPTR: A4BXN5 Putative lycopene cyclase; InterPro IPR006076:IPR008671; COGs: COG0644 Dehydrogenase (flavoprotein); KEGG: pub:SAR11_0122 lycopene cyclase; PFAM: FAD dependent oxidoreductase; TIGRFAM: lycopene cyclase family protein
YP_003506180.1	PFAM: protein of unknown function DUF422; SPTR: A0ZKY3 Putative uncharacterized protein; InterPro IPR007354; COGs: COG2324 membrane protein; KEGG: afw:Anae109_4078 membrane protein-like protein; PFAM: Protein of unknown function (DUF422)
YP_003506181.1	PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; InterPro IPR002123; KEGG: mxa:MXAN_0902 acyltransferase domain protein; SPTR: A1HTW7 1-acyl-sn-glycerol-3-phosphate acyltransferases; PFAM: Acyltransferase
YP_003506182.1	PFAM: glycosyl transferase family 2; SPTR: A4CTP8 Putative glycosyltransferase family 2; InterPro IPR001173; COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; KEGG: met:M446_3158 glycosyl transferase family protein; PFAM: Glycosyl transferase family 2
YP_003506183.1	PFAM: FAD dependent oxidoreductase; amine oxidase; SPTR: A6DYH8 Amine oxidase; InterPro IPR000759:IPR002937:IPR006076; COGs: COG1233 Phytoene dehydrogenase and related protein; KEGG: bra:BRADO1614 hydroxyneurosporene and rhodopin dehydrogenase; PFAM: FAD dependent oxidoreductase; TIGRFAM: phytoene desaturase
YP_003506184.1	PFAM: cytochrome P450; SPTR: A2TU89 Cytochrome P450 hydroxylase; InterPro IPR001128:IPR002401; COGs: COG2124 Cytochrome P450; KEGG: mxa:MXAN_2304 cytochrome P450 family protein; PFAM: Cytochrome P450
YP_003506185.1	PFAM: GCN5-related N-acetyltransferase; SPTR: A8CRT4 GCN5-related N-acetyltransferase; InterPro IPR000182; COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; KEGG: bca:BCE_2976 acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_003506186.1	PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; SPTR: A3RRM9 GdhA; InterPro IPR006095:IPR006097:IPR006096; COGs: COG0334 Glutamate dehydrogenase/leucine dehydrogenase; KEGG: rso:RSc0480 glutamate dehydrogenase (NAD(P)+) oxidoreductase protein; PFAM: Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
YP_003506187.1	PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; SPTR: P96110 Glutamate dehydrogenase; InterPro IPR006095:IPR006097:IPR006096; COGs: COG0334 Glutamate dehydrogenase/leucine dehydrogenase; KEGG: ppd:Ppro_1713 Glu/Leu/Phe/Val dehydrogenase, C terminal; PFAM: Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
YP_003506188.1	PFAM: thioesterase superfamily protein; SPTR: A6ZII7 Acyl-CoA thioesterase; InterPro IPR006683; COGs: COG1607 Acyl-CoA hydrolase; KEGG: rpt:Rpal_2645 thioesterase superfamily protein; PFAM: Thioesterase superfamily
YP_003506189.1	PRIAM: Dimethylallyltranstransferase; PFAM: Polyprenyl synthetase; InterPro IPR000092; KEGG: mpt:Mpe_A0510 dimethylallyltransferase; COGs: COG0142 Geranylgeranyl pyrophosphate synthase; SPTR: A2WCW1 Trans-hexaprenyltranstransferase; PFAM: Polyprenyl synthetase
YP_003506190.1	KEGG: pen:PSEEN2394 transcriptional regulator, GntR family
YP_003506191.1	PFAM: CoA-binding domain protein; Rex DNA-binding domain protein; SPTR: Q5SHS3 Redox-sensing transcriptional repressor rex; InterPro IPR009718:IPR003781; COGs: COG2344 AT-rich DNA-binding protein; KEGG: dvl:Dvul_2068 redox-sensing transcriptional repressor REX; PFAM: CoA binding domain; Putative DNA-binding protein N-terminus
YP_003506192.1	PFAM: Sporulation domain protein; InterPro IPR007730; KEGG: azo:azo1051 hypothetical protein; PFAM: Sporulation related domain
YP_003506193.1	PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_3; SMART: Tetratricopeptide domain protein; InterProIPR011717:IPR001440:IPR011716:IPR013105:IPR 013026; KEGG: rpc:RPC_3120 TPR repeat-containing protein; SPTR: A3CV42 Tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide repeat; Tetratricopeptide repeat
YP_003506194.1	TIGRFAM: isopentenyl-diphosphate delta-isomerase, type 2; PRIAM: Isopentenyl-diphosphate Delta-isomerase; PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; ferredoxin-dependent glutamate synthase; InterPro IPR000262:IPR002932:IPR011179; KEGG: psa:PST_3876 isopentenyl pyrophosphate isomerase; COGs: COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenase; SPTR: Q9RVE2 Isopentenyl-diphosphate delta-isomerase; PFAM: Conserved region in glutamate synthase; TIGRFAM: isopentenyl-diphosphate delta-isomerase, type 2
YP_003506195.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; SPTR: A9U6K0 Predicted protein; InterPro IPR006140; COGs: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenase; KEGG: hypothetical protein; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
YP_003506197.1	PFAM: Disulphide bond formation protein DsbB; SPTR: O32217 Disulfide bond formation protein C; InterPro IPR003752; COGs: COG1495 Disulfide bond formation protein DsbB; KEGG: bsu:BSU33470 thiol-disulfide oxidoreductase; PFAM: Disulfide bond formation protein DsbB
YP_003506199.1	TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; InterPro IPR013822:IPR000897:IPR003593:IPR004390; KEGG: noc:Noc_1934 cell division transporter substrate-binding protein FtsY; COGs: COG0552 Signal recognition particle GTPase; SPTR: P83749 Cell division protein ftsY; PFAM: SRP54-type protein, helical bundle domain; SRP54-type protein, GTPase domain; TIGRFAM: signal recognition particle-docking protein FtsY
YP_003506200.1	TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; SUA5 domain protein; InterPro IPR006070:IPR005145:IPR004388; KEGG: rsq:Rsph17025_2463 SUA5/YciO/YrdC/YwlC family protein; COGs: COG0009 Putative translation factor (SUA5); SPTR: A6C3T1 Sua5 related protein; PFAM: yrdC domain; SUA5 domain; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein
YP_003506201.1	KEGG: mpt:Mpe_A3601 hypothetical protein
YP_003506202.1	PFAM: protein of unknown function Met10; SMART: PUA domain containing protein; InterPro IPR003402:IPR002478; KEGG: gsu:GSU2626 hypothetical protein; COGs: COG1092 SAM-dependent methyltransferase; SPTR: A5TUK5 Possible methyltransferase; PFAM: Met-10+ like-protein
YP_003506203.1	PFAM: ApaG domain protein; SPTR: Q98BB4 Protein apaG; InterPro IPR007474; COGs: COG2967 Uncharacterized protein affecting Mg2+/Co2+ transport; KEGG: mlo:mll5649 ApaG; PFAM: Protein of unknown function (DUF525)
YP_003506204.1	PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593:IPR017871; KEGG: dal:Dalk_2887 ABC transporter related; COGs: COG1131 ABC-type multidrug transport system ATPase component; SPTR: Q5JDA7 ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter
YP_003506205.1	SMART: peptidase S41; PDZ/DHR/GLGF domain protein; SPTR: A3ZAV8 Carboxyl-terminal processing protease; KEGG: carboxy-terminal protease ; K03797 carboxyl-terminal processing protease; InterPro IPR001478:IPR005151:IPR004447; PRIAM: C-terminal processing peptidase; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; COGs: COG0793 Periplasmic protease; TIGRFAM: carboxyl-terminal protease; PFAM: Peptidase family S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc)
YP_003506206.1	TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593:IPR017871:IPR005286; KEGG: mxa:MXAN_5748 putative cell division ABC transporter, ATP-binding protein FtsE; COGs: COG2884 ATPase involved in cell division; SPTR: A7VHN5 Putative uncharacterized protein; PFAM: ABC transporter; TIGRFAM: cell division ATP-binding protein FtsE
YP_003506207.1	TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; InterPro IPR003489; KEGG: bcz:BCZK4884 ribosomal subunit interface protein; COGs: COG1544 Ribosome-associated protein Y (PSrp-1); SPTR: Q9RVE7 Protein DR_1082; PFAM: Sigma 54 modulation protein / S30EA ribosomal protein; TIGRFAM: ribosomal subunit interface protein
YP_003506208.1	SPTR: A3IXJ8 Cobyrinic acid a,c-diamide synthase; COGs: COG1192 ATPase involved in chromosome partitioning; KEGG: pna:Pnap_4776 cobyrinic acid a,c-diamide synthase
YP_003506209.1	PFAM: aminotransferase class I and II; SPTR: A7CZ85 Aminotransferase class I and II; InterPro IPR004839; COGs: COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities; KEGG: csa:Csal_3036 aminotransferase, class I and II; PFAM: Aminotransferase class I and II
YP_003506210.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; InterPro IPR000160; KEGG: dvm:DvMF_2637 diguanylate cyclase with extracellular sensor; COGs: COG2199 FOG: GGDEF domain; SPTR: A6CMH3 Diguanylate cyclase (GGDEF domain); PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_003506211.1	PRIAM: Ribonuclease H; PFAM: ribonuclease HII/HIII; InterPro IPR001352; KEGG: noc:Noc_2022 ribonuclease H; COGs: COG0164 Ribonuclease HII; SPTR: Q5SLU5 Ribonuclease HII; PFAM: Ribonuclease HII
YP_003506213.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; SPTR: A3IP83 Extracellular solute-binding protein; InterPro IPR004682:IPR006311; COGs: COG4663 TRAP-type mannitol/chloroaromatic compound transport system periplasmic component; KEGG: xau:Xaut_3328 TRAP dicarboxylate transporter-DctP subunit; PFAM: Bacterial extracellular solute-binding protein, family 7; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence
YP_003506214.1	PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; SPTR: A0YPZ6 Tripartite ATP-independent periplasmic transporter, DctQ component; InterPro IPR007387; COGs: COG4665 TRAP-type mannitol/chloroaromatic compound transport system small permease component; KEGG: tbd:Tbd_2150 TRAP transporter, small subunit; PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component
YP_003506215.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; InterPro IPR010656:IPR004681; KEGG: bav:BAV1578 C4 dicarboxylate tripartite ATP-independent periplasmic (TRAP) transporter, permease component; COGs: COG4664 TRAP-type mannitol/chloroaromatic compound transport system large permease component; SPTR: A0ZHL6 Putative uncharacterized protein; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit
YP_003506216.1	PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; SPTR: A3RR72 Quinone oxidoreductase; InterPro IPR013154:IPR013149:IPR002364; COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; KEGG: sus:Acid_7430 alcohol dehydrogenase; PFAM: Zinc-binding dehydrogenase; Alcohol dehydrogenase GroES-like domain
YP_003506217.1	PFAM: glycoside hydrolase family 3 domain protein; SPTR: P40406 Uncharacterized lipoprotein ybbD; InterPro IPR001764:IPR006162; COGs: COG1472 Beta-glucosidase-related glycosidase; KEGG: cvi:CV_0259 glycosy hydrolase family protein; PFAM: Glycosyl hydrolase family 3 N terminal domain
YP_003506218.1	TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PRIAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; InterPro IPR006680:IPR003764; KEGG: cvi:CV_0556 N-acetylglucosamine-6-phosphate deacetylase; COGs: COG1820 N-acetylglucosamine-6-phosphate deacetylase; SPTR: A8CV72 N-acetylglucosamine-6-phosphate deacetylase; PFAM: Amidohydrolase family; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase
YP_003506219.1	PRIAM: Glutamine--fructose-6-phosphate transaminase (isomerizing); PFAM: sugar isomerase (SIS); SPTR: A3LEL0 Putative uncharacterized protein; KEGG: sml:Smlt4021 putative phosphosugar-binding protein; COGs: COG2222 phosphosugar isomerase; InterPro IPR001347; PFAM: SIS domain
YP_003506220.1	PRIAM: 3-hydroxybutyryl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; InterPro IPR006176:IPR006108:IPR006180; KEGG: bcy:Bcer98_3864 3-hydroxybutyryl-CoA dehydrogenase; COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; SPTR: Q9RVG1 Probable 3-hydroxybutyryl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
YP_003506221.1	KEGG: bpt:Bpet3506 hypothetical protein; SPTR: A6FQE3 Polyphosphate kinase
YP_003506223.1	PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp; InterPro IPR001808:IPR000595:IPR012318; KEGG: mag:amb2324 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; SPTR: A3ZXR8 Transcriptional regulator; PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain
YP_003506224.1	PFAM: Mg2 transporter protein CorA family protein; SPTR: A3U9J6 Magnesium and cobalt transport protein; InterPro IPR002523; COGs: COG0598 Mg2+ and Co2+ transporter; KEGG: pca:Pcar_2713 magnesium and cobalt transport protein CorA; PFAM: CorA-like Mg2+ transporter protein; TIGRFAM: magnesium Mg(2+) and cobalt Co(2+) transport protein (corA)
YP_003506225.1	PFAM: CutA1 divalent ion tolerance protein; SPTR: Q7SIA8 Divalent-cation tolerance protein cutA; InterPro IPR004323; COGs: COG1324 conserved hypothetical protein involved in tolerance to divalent cations; KEGG: noc:Noc_1056 CutA1 divalent ion tolerance protein; PFAM: CutA1 divalent ion tolerance protein
YP_003506226.1	PFAM: ornithine cyclodeaminase/mu-crystallin; SPTR: A7CCY5 Ornithine cyclodeaminase/mu-crystallin; InterPro IPR003462; COGs: COG2423 ornithine cyclodeaminase mu-crystallin homolog; KEGG: rpi:Rpic_3546 ornithine cyclodeaminase/mu-crystallin; PFAM: Ornithine cyclodeaminase/mu-crystallin family
YP_003506227.1	PFAM: MOSC domain containing protein; SPTR: A6BK61 Putative uncharacterized protein; InterPro IPR005302; COGs: COG2258 conserved hypothetical protein; KEGG: sun:SUN_0055 hypothetical protein; PFAM: MOSC domain
YP_003506228.1	PFAM: cytochrome c class I; InterPro IPR003088:IPR009056; KEGG: bmj:BMULJ_04933 class I cytochrome c; SPTR: P04164 Cytochrome c-552 (Fragment); PFAM: Cytochrome c
YP_003506229.1	PRIAM: Sulfite oxidase; PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; InterPro IPR008335:IPR000572:IPR005066:IPR006311; KEGG: oca:OCAR_6288 twin-arginine translocation pathway signal; COGs: COG2041 Sulfite oxidase; SPTR: A6AZ59 Twin-arginine translocation pathway signal; PFAM: TAT (twin-arginine translocation) pathway signal sequence; Oxidoreductase molybdopterin binding domain; Mo-co oxidoreductase dimerisation domain; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence
YP_003506230.1	TIGRFAM: DNA mismatch repair protein MutL; PFAM: MutL dimerisation; DNA mismatch repair protein domain protein; ATP-binding region ATPase domain protein; InterProIPR013507:IPR003594:IPR014790:IPR014762:IPR 014763; KEGG: acr:Acry_0628 DNA mismatch repair protein MutL; COGs: COG0323 DNA mismatch repair enzyme (predicted ATPase); SPTR: Q9RA54 DNA mismatch repair protein mutL; PFAM: DNA mismatch repair protein, C-terminal domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; MutL C terminal dimerisation domain; TIGRFAM: DNA mismatch repair protein MutL
YP_003506231.1	TIGRFAM: DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS domain protein; MutS II domain protein; MutS IV domain protein; MutS III domain protein; SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein; InterProIPR007860:IPR000432:IPR007861:IPR007696:IPR 007695:IPR005748; KEGG: sus:Acid_4760 DNA mismatch repair protein MutS; COGs: COG0249 Mismatch repair ATPase (MutS family); SPTR: P61671 DNA mismatch repair protein mutS; PFAM: MutS domain III; MutS domain V; MutS domain II; MutS domain I; TIGRFAM: DNA mismatch repair protein MutS
YP_003506232.1	TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; InterPro IPR001453:IPR008284; KEGG: afw:Anae109_1304 molybdenum cofactor synthesis domain-containing protein; COGs: COG0521 Molybdopterin biosynthesis protein; SPTR: A3IN20 Molybdopterin biosynthesis protein; PFAM: Probable molybdopterin binding domain; TIGRFAM: molybdenum cofactor synthesis domain
YP_003506233.1	InterPro IPR002205:IPR006691:IPR005743; TIGRFAM: DNA gyrase, A subunit; PRIAM: DNA topoisomerase (ATP-hydrolyzing); COGs: COG0188 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit; SMART: DNA gyrase/topoisomerase IV subunit A; SPTR: P94605 DNA gyrase subunit A; KEGG: bha:BH0007 DNA gyrase subunit A; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal domain, beta-propeller; TIGRFAM: DNA gyrase, A subunit
YP_003506234.1	TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; InterPro IPR000577:IPR005999; KEGG: gme:Gmet_1676 glycerol kinase; COGs: COG0554 Glycerol kinase; SPTR: Q9RT38 Glycerol kinase; PFAM: FGGY family of carbohydrate kinases, C-terminal domain; FGGY family of carbohydrate kinases, N-terminal domain; TIGRFAM: glycerol kinase
YP_003506235.1	KEGG: similar to protein O-D-mannosyltransferase; K00728 dolichyl-phosphate-mannose-protein mannosyltransferase
YP_003506236.1	KEGG: scl:sce8153 hypothetical protein
YP_003506237.1	KEGG: hypothetical protein
YP_003506238.1	PFAM: protein of unknown function DUF450; InterPro IPR002296:IPR007409:IPR002052; KEGG: vei:Veis_1308 putative type II DNA modification enzyme; SPTR: O52000 Putative uncharacterized protein; PFAM: Type I restriction enzyme R protein N terminus (HSDR_N)
YP_003506240.1	KEGG: scl:sce8203 putative 5-methylcytosine-specific restriction enzyme B
YP_003506241.1	PFAM: filamentation induced by cAMP protein Fic; SPTR: A6DG29 Filamentation induced by cAMP protein Fic; InterPro IPR003812; COGs: COG3177 conserved hypothetical protein; KEGG: bur:Bcep18194_B2094 filamentation induced by cAMP protein Fic; PFAM: Fic/DOC family
YP_003506242.1	PFAM: helicase domain protein; SMART: helicase domain protein; DEAD-like helicase; InterPro IPR001650:IPR014001; KEGG: sfu:Sfum_0411 helicase domain protein; SPTR: A5YS53 Helicase, C-terminal; PFAM: Helicase conserved C-terminal domain
YP_003506243.1	PFAM: transposase IS4 family protein; InterPro IPR002559; KEGG: lpp:lpp2895 hypothetical protein; SPTR: A4VBY8 Putative uncharacterized protein; PFAM: Transposase DDE domain
YP_003506244.1	PFAM: Peptidase M23; SPTR: A4NPF1 Predicted membrane-bound metallopeptidase; InterPro IPR016047; COGs: COG4942 Membrane-bound metallopeptidase; KEGG: bcr:BCAH187_A1592 peptidase, M23/M37 family; PFAM: Peptidase family M23
YP_003506245.1	PFAM: protein of unknown function DUF214; SPTR: A1HT00 Putative uncharacterized protein; InterPro IPR003838; COGs: COG2177 Cell division protein; KEGG: pag:PLES_03721 cell division protein FtsX; PFAM: Predicted permease
YP_003506246.1	KEGG: mxa:MXAN_5052 response regulator
YP_003506247.1	TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; InterPro IPR001463:IPR001734; KEGG: cps:CPS_3842 amino acid/cation symporter; COGs: COG1115 Na+/alanine symporter; SPTR: A3JAY1 Putative sodium/alanine symporter; PFAM: Sodium:alanine symporter family; TIGRFAM: amino acid carrier protein
YP_003506248.1	TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; InterPro IPR003382:IPR004507; KEGG: dde:Dde_0150 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; COGs: COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase; SPTR: Q9RR91 Probable aromatic acid decarboxylase; PFAM: Flavoprotein; TIGRFAM: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases
YP_003506249.1	TIGRFAM: undecaprenol kinase; PRIAM: Undecaprenyl-diphosphatase; PFAM: Bacitracin resistance protein BacA; InterPro IPR003824; KEGG: wsu:WS1290 putative undecaprenol kinase bacitracin resistance protein; COGs: COG1968 Uncharacterized bacitracin resistance protein; SPTR: O67939 Undecaprenyl-diphosphatase; PFAM: Bacitracin resistance protein BacA; TIGRFAM: undecaprenyl-diphosphatase UppP
YP_003506250.1	InterPro IPR001228; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; COGs: COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase; SPTR: Q5SLX2 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; KEGG: bha:BH0107 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; PFAM: Uncharacterized protein family UPF0007; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
YP_003506251.1	TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PRIAM: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase domain protein; InterPro IPR013750:IPR006204:IPR004424; KEGG: glo:Glov_2596 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; COGs: COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase; SPTR: P83700 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; PFAM: GHMP kinases N terminal domain; GHMP kinases C terminal; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase
YP_003506252.1	TIGRFAM: ABC transporter, periplasmic binding protein, thiB subfamily; PFAM: extracellular solute-binding protein family 1; InterPro IPR006059:IPR005948; KEGG: nmn:NMCC_0042 thiamin-binding periplasmic protein; COGs: COG4143 ABC-type thiamine transport system periplasmic component; SPTR: A6ZIJ2 ABC transporter; PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: ABC transporter periplasmic binding protein, thiB subfamily
YP_003506253.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A6ZIJ1 ABC transporter permease protein; InterPro IPR000515; COGs: COG1178 ABC-type Fe3+ transport system permease component; KEGG: cvi:CV_3162 thiamine transport system permease protein; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003506254.1	PFAM: ABC-2 type transporter; SPTR: A7LSG1 Putative uncharacterized protein; InterPro IPR013525; COGs: COG1277 ABC-type transport system involved in multi-copper enzyme maturation permease component; KEGG: bpt:Bpet0290 putative ABC-2 type transport system permease protein; PFAM: ABC-2 type transporter
YP_003506255.1	PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: A8S3F5 Putative uncharacterized protein; KEGG: mes:Meso_3123 ABC transporter related; COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439:IPR003593; PFAM: ABC transporter
YP_003506256.1	SPTR: A8S3F6 Putative uncharacterized protein; COGs: COG1470 membrane protein; KEGG: mes:Meso_3122 hypothetical protein; PFAM: NPCBM-associated, NEW3 domain of alpha-galactosidase
YP_003506257.1	PFAM: heat shock protein Hsp20; CS; SPTR: P46729 18 kDa antigen 1; InterPro IPR017447:IPR002068; COGs: COG0071 Molecular chaperone (small heat shock protein); KEGG: wpi:WPa_0614 heat shock protein, HSP20 family; PFAM: CS domain
YP_003506258.1	PFAM: major facilitator superfamily MFS_1; InterPro IPR011701:IPR007114; KEGG: scl:sce4003 major facilitator superfamily permease; SPTR: A3K6C0 Putative integral membrane transport protein; PFAM: Major Facilitator Superfamily
YP_003506259.1	PFAM: protein of unknown function DUF985; SPTR: A1ZGG0 Putative uncharacterized protein; InterPro IPR009327; COGs: COG3542 conserved hypothetical protein; KEGG: sfu:Sfum_2769 protein of unknown function DUF985; PFAM: Cupin superfamily (DUF985)
YP_003506260.1	SPTR: Q12Y60 Putative uncharacterized protein; COGs: COG2389 Uncharacterized metal-binding protein; KEGG: bcy:Bcer98_3764 hypothetical protein; PFAM: Uncharacterized metal-binding protein (DUF2227)
YP_003506261.1	PFAM: regulatory protein TetR; SPTR: A3ICN9 YsiA; InterPro IPR001647; COGs: COG1309 Transcriptional regulator; KEGG: ppr:PBPRA0090 TetR family transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family
YP_003506262.1	PFAM: transcription factor CarD; SPTR: A6NUQ9 Putative uncharacterized protein; InterPro IPR003711; COGs: COG1329 Transcriptional regulators similar to M. xanthus CarD; KEGG: dps:DP2731 transcription factor; PFAM: CarD-like/TRCF domain
YP_003506263.1	KEGG: sat:SYN_02641 cofactor-independent phosphoglycerate mutase; COGs: COG3635 phosphoglycerate mutase AP superfamily; InterPro IPR006124:IPR004456; SPTR: Q5SM27 Probable 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; PRIAM: Phosphoglycerate mutase; PFAM: metalloenzyme domain protein; TIGRFAM: phosphonopyruvate decarboxylase-related protein; PFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Metalloenzyme superfamily; TIGRFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal form
YP_003506264.1	PFAM: GCN5-related N-acetyltransferase; SPTR: A2XMU9 Putative uncharacterized protein; InterPro IPR000182; COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; KEGG: bca:BCE_1891 acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_003506265.1	PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; protease-associated PA domain protein; SPTR: Q6H8Q3 Subtilisin-like protease (Fragment); InterPro IPR000209:IPR003137; COGs: COG1404 Subtilisin-like serine protease; KEGG: scl:sce3689 subtilisin like protease; PFAM: Subtilase family; Domain of Unknown Function (DUF1034)
YP_003506266.1	TIGRFAM: prolyl-tRNA synthetase; PFAM: Anticodon-binding domain protein; Prolyl-tRNA synthetase, class II-like; tRNA synthetase class II (G H P and S); InterProIPR002316:IPR002314:IPR016061:IPR004154:IPR 006195:IPR004499; KEGG: mxa:MXAN_6655 prolyl-tRNA synthetase; COGs: COG0442 Prolyl-tRNA synthetase; SPTR: Q72GF9 Prolyl-tRNA synthetase; PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); Prolyl-tRNA synthetase, C-terminal; TIGRFAM: prolyl-tRNA synthetase, family I
YP_003506267.1	TIGRFAM: endonuclease III; PRIAM: DNA-(apurinic or apyrimidinic site) lyase; PFAM: HhH-GPD family protein; InterPro IPR003265:IPR004036:IPR005759; SPTR: A2UA93 Endonuclease III; KEGG: sfu:Sfum_1062 endonuclease III; COGs: COG0177 EndoIII-related endonuclease; SMART: HhH-GPD family protein; PFAM: Iron-sulfur binding domain of endonuclease III; HhH-GPD superfamily base excision DNA repair protein; TIGRFAM: endonuclease III
YP_003506269.1	PRIAM: Phosphoprotein phosphatase; PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; InterPro IPR014045:IPR001932:IPR000585; KEGG: ank:AnaeK_0770 protein serine/threonine phosphatase; COGs: COG0631 Serine/threonine protein phosphatase; SPTR: A5ZMI4 Putative uncharacterized protein; PFAM: Protein phosphatase 2C
YP_003506270.1	TIGRFAM: hemerythrin-like metal-binding protein; SPTR: A4BBW7 Putative uncharacterized protein; InterPro IPR012312:IPR012827; COGs: COG2703 Hemerythrin; KEGG: ank:AnaeK_3116 hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain; TIGRFAM: hemerythrin-like metal-binding domain
YP_003506271.1	PRIAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: putative methyltransferase; Methyltransferase type 12; InterPro IPR013217:IPR003358; KEGG: lch:Lcho_1911 tRNA (guanine-N(7)-)-methyltransferase; COGs: COG0220 S-adenosylmethionine-dependent methyltransferase; SPTR: Q5SHW1 tRNA (guanine-N(7)-)-methyltransferase; PFAM: Putative methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase
YP_003506273.1	homodimeric type; TIGRFAM: 2-oxo-acid dehydrogenase E1 subunit, homodimeric type; SPTR: A3LJB1 Pyruvate dehydrogenase; InterPro IPR004660; COGs: COG2609 Pyruvate dehydrogenase complex dehydrogenase (E1) component; KEGG: aba:Acid345_2792 pyruvate dehydrogenase subunit E1; TIGRFAM: pyruvate dehydrogenase E1 component, homodimeric type
YP_003506274.1	PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; SPTR: A4LDI0 Pyruvate dehydrogenase complex E2 component, dihydrolipoamide acetyltransferase; InterPro IPR004167:IPR000089:IPR001078; COGs: COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) protein; KEGG: noc:Noc_1255 branched-chain alpha-keto acid dehydrogenase subunit E2; PFAM: e3 binding domain; 2-oxoacid dehydrogenases acyltransferase (catalytic domain); Biotin-requiring enzyme; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form
YP_003506275.1	TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; InterPro IPR011994:IPR003136; KEGG: dds:Ddes_0760 cytidylate kinase; COGs: COG0283 Cytidylate kinase; SPTR: Q5SL35 Cytidylate kinase; PFAM: Cytidylate kinase; TIGRFAM: cytidylate kinase
YP_003506276.1	SPTR: Q72LH1 3-phosphoshikimate 1-carboxyvinyltransferase; KEGG: ppd:Ppro_1347 3-phosphoshikimate 1-carboxyvinyltransferase; COGs: COG0128 5-enolpyruvylshikimate-3-phosphate synthase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PRIAM: 3-phosphoshikimate 1-carboxyvinyltransferase; InterPro IPR001986:IPR006264; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase
YP_003506277.1	PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; SPTR: A6DBB0 Exopolyphosphatase-related protein; InterPro IPR003156:IPR001667; COGs: COG0618 Exopolyphosphatase-related protein; KEGG: phosphoesterase RecJ domain protein ; K06881; PFAM: DHHA1 domain; DHH family
YP_003506278.1	PRIAM: O-acetylhomoserine aminocarboxypropyltransferase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aminotransferase class-III; InterPro IPR005814:IPR000653:IPR000277:IPR002155; KEGG: hypothetical protein ; K01740 O-acetylhomoserine (thiol)-lyase; COGs: COG2873 O-acetylhomoserine sulfhydrylase; SPTR: A4CV58 O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism PLP-dependent enzyme
YP_003506279.1	TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PRIAM: Methylenetetrahydrofolate reductase (NAD(P)H); PFAM: methylenetetrahydrofolate reductase; InterPro IPR003171:IPR004620; KEGG: mxa:MXAN_3039 5,10-methylenetetrahydrofolate reductase; COGs: COG0685 5 10-methylenetetrahydrofolate reductase; SPTR: O67422 5,10-methylenetetrahydrofolate reductase; PFAM: Methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase, prokaryotic form
YP_003506280.1	PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; SPTR: O28179 Alcohol dehydrogenase, zinc-dependent; InterPro IPR013154:IPR013149; COGs: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenase; KEGG: sfu:Sfum_2251 alcohol dehydrogenase GroES domain protein; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase
YP_003506282.1	PFAM: GCN5-related N-acetyltransferase; SPTR: B2YI78 Putative acetyltransferase; InterPro IPR000182; COGs: COG0456 Acetyltransferase; KEGG: csa:Csal_2683 GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_003506283.1	TIGRFAM: calcium/proton antiporter, CaCA family; calcium/proton exchanger; PFAM: sodium/calcium exchanger membrane region; InterPro IPR004837:IPR004713:IPR004798; KEGG: mca:MCA0142 calcium/proton exchanger; COGs: COG0387 Ca2+/H+ antiporter; SPTR: A3INU4 Calcium/proton exchanger; PFAM: Sodium/calcium exchanger protein; TIGRFAM: calcium/proton exchanger (cax); calcium/proton exchanger
YP_003506285.1	PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; InterPro IPR006674:IPR003607; KEGG: gme:Gmet_2559 metal dependent phosphohydrolase; COGs: COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain; SPTR: A1HRL7 Metal dependent phosphohydrolase; PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG
YP_003506287.1	PFAM: sigma-70 region 4 domain protein; InterPro IPR007630; KEGG: nar:Saro_3770 regulatory protein, LuxR; PFAM: Sigma-70, region 4
YP_003506288.1	PFAM: ATP-cone domain protein; SPTR: Q8TGY9 2-phosphoglycerate kinase; InterPro IPR005144; COGs: COG2074 2-phosphoglycerate kinase; KEGG: hypothetical protein; PFAM: ATP cone domain
YP_003506289.1	PFAM: aldo/keto reductase; SPTR: A0ZD71 Putative uncharacterized protein; InterPro IPR001395; COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); KEGG: hypothetical protein; PFAM: Aldo/keto reductase family
YP_003506290.1	PFAM: ROK family protein; SPTR: A6N7U0 Probable glucokinase; InterPro IPR000600; COGs: COG1940 Transcriptional regulator/sugar kinase; KEGG: mlo:mlr7234 glucose kinase; PFAM: ROK family; TIGRFAM: ROK family protein (putative glucokinase)
YP_003506292.1	PFAM: helix-turn-helix domain protein; InterPro IPR001387; KEGG: oca:OCAR_4515 transcriptional regulator of XRE family; SMART: helix-turn-helix domain protein; PFAM: Helix-turn-helix
YP_003506293.1	PFAM: helix-turn-helix domain protein; InterPro IPR001387; KEGG: plu:plu3715 hypothetical protein; SMART: helix-turn-helix domain protein; PFAM: Helix-turn-helix
YP_003506295.1	KEGG: vvu:VV1_0072 hypothetical protein
YP_003506296.1	KEGG: asa:ASA_3672 superfamily II helicase; SPTR: A3V916 DNA primase domain protein
YP_003506300.1	KEGG: rpt:Rpal_0183 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase
YP_003506310.1	KEGG: bja:blr0521 hypothetical protein; SPTR: Q4FX85 Putative uncharacterized protein
YP_003506311.1	InterPro IPR007039; PFAM: Conjugal transfer protein TrbC; PFAM: TrbC/VIRB2 family
YP_003506313.1	SPTR: A3EW83 Putative uncharacterized protein; KEGG: ppd:Ppro_0253 sex pilus assembly protein; COGs: COG3451 Type IV secretory pathway VirB4 protein; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
YP_003506314.1	InterPro IPR010916; KEGG: aba:Acid345_1066 hypothetical protein
YP_003506317.1	SPTR: A4F5I0 Putative uncharacterized protein; COGs: COG3505 Type IV secretory pathway VirD4 protein; KEGG: sit:TM1040_3794 TraG protein
YP_003506321.1	PFAM: metal-dependent phosphohydrolase HD sub domain; SPTR: A7VF24 Putative uncharacterized protein; InterPro IPR006674; COGs: COG2206 HD-GYP domain; KEGG: met:M446_0838 response regulator receiver modulated metal dependent phosphohydrolase; PFAM: HD domain
YP_003506322.1	PFAM: Lytic transglycosylase catalytic; SPTR: A3K1S2 Transglycosylase SLT domain protein; InterPro IPR008258; COGs: COG0741 Soluble lytic murein transglycosylase and related regulatory protein (some contain LysM/invasin domains); KEGG: aav:Aave_2727 lytic transglycosylase, catalytic; PFAM: Transglycosylase SLT domain
YP_003506323.1	SMART: AAA ATPase; SPTR: Q5VMB3 Os06g0155600 protein; InterPro IPR003593; COGs: COG3854 conserved hypothetical protein; KEGG: Os06g0155600; hypothetical protein; TIGRFAM: stage III sporulation protein AA
YP_003506329.1	PFAM: S-layer domain protein; InterPro IPR001119; KEGG: rce:RC1_0507 SMC family protein; SPTR: P35830 S-layer protein; PFAM: S-layer homology domain
YP_003506331.1	KEGG: kpn:KPN_00940 recombination protein
YP_003506332.1	KEGG: CROCC; ciliary rootlet coiled-coil, rootletin; SPTR: Q2QY30 Retrotransposon protein, putative, unclassified
YP_003506333.1	KEGG: hypothetical protein
YP_003506335.1	KEGG: azo:azo1484 putative extracellular nuclease; SPTR: Q8TU27 Putative uncharacterized protein
YP_003506336.1	KEGG: sigma subunit for chloroplast RNA polymerase
YP_003506339.1	PFAM: RES domain protein; SPTR: A3JA09 Putative uncharacterized protein; InterPro IPR014914; COGs: COG5654 conserved hypothetical protein; KEGG: ajs:Ajs_0567 hypothetical protein; PFAM: RES domain
YP_003506340.1	SPTR: A3YY85 Putative uncharacterized protein; InterPro IPR011979; COGs: COG5642 conserved hypothetical protein; KEGG: nmu:Nmul_A0917 hypothetical protein; PFAM: Protein of unknown function (DUF2384); TIGRFAM: conserved hypothetical protein TIGR02293
YP_003506342.1	PFAM: FAD dependent oxidoreductase; InterPro IPR013027:IPR006076; KEGG: hypothetical protein; SPTR: A6FXV9 Putative uncharacterized protein; PFAM: FAD dependent oxidoreductase
YP_003506345.1	PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593; KEGG: scl:sce6750 ABC transporter, ATP-binding protein; COGs: COG4586 ABC-type uncharacterized transport system ATPase component; SPTR: A8S3S6 Putative uncharacterized protein; PFAM: ABC transporter
YP_003506346.1	PFAM: protein of unknown function DUF990; SPTR: A5MVQ4 Putative uncharacterized protein; InterPro IPR010390; COGs: COG4587 ABC-type uncharacterized transport system permease component; KEGG: mxa:MXAN_6002 putative ABC transporter, permease protein; PFAM: Protein of unknown function (DUF990)
YP_003506347.1	PFAM: protein of unknown function DUF990; SPTR: A5MVQ5 Putative uncharacterized protein; InterPro IPR010390; COGs: COG3694 ABC-type uncharacterized transport system permease component; KEGG: scl:sce6748 hypothetical protein; PFAM: Protein of unknown function (DUF990)
YP_003506348.1	COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR001395:IPR005399; KEGG: bba:Bd3502 potassium voltage-gated channel beta subunit; SPTR: A4BF68 Voltage-gated potassium channel beta subunit; PFAM: aldo/keto reductase; PFAM: Aldo/keto reductase family; TIGRFAM: voltage-dependent potassium channel beta subunit, animal
YP_003506349.1	SPTR: P05057 Kanamycin nucleotidyltransferase
YP_003506350.1	KEGG: swi:Swit_4764 2-octaprenylphenol hydroxylase
YP_003506351.1	SPTR: P53554 Biotin biosynthesis cytochrome P450-like enzyme; InterPro IPR002397:IPR001128; COGs: COG2124 Cytochrome P450; KEGG: bsu:BSU30190 cytochrome P450 enzyme
YP_003506353.1	KEGG: mpt:Mpe_B0302 hypothetical protein; SPTR: Q6U9Q3 Putative uncharacterized protein
YP_003506356.1	InterPro IPR002716; PFAM: PilT protein domain protein; PFAM: PIN domain
YP_003506357.1	TIGRFAM: transposase ; transposase, IS605 OrfB family; SPTR: A6ZIJ8 Putative uncharacterized protein; KEGG: bcb:BCB4264_A5164 transposase, IS605 family, OrfA; InterPro IPR010094:IPR010095; TIGRFAM: transposase, putative, N-terminal domain; transposase, IS605 OrfB family, central region
YP_003506360.1	PFAM: protein of unknown function DUF955; InterPro IPR010359; KEGG: baa:BXB0111 hypothetical protein; SPTR: A8CQU1 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF955)
YP_003506366.1	SMART: AAA ATPase; SPTR: B5LPM0 DNA replication protein DnaC; InterPro IPR003593; COGs: COG1484 DNA replication protein; KEGG: bcr:BCAH187_A4023 putative prophage LambdaBa02, DNA replication protein DnaC
YP_003506368.1	InterPro IPR007527:IPR013032; PFAM: zinc finger SWIM domain protein; PFAM: SWIM zinc finger
YP_003506369.1	SPTR: A7VY45 Putative uncharacterized protein; COGs: COG4712 conserved hypothetical protein; KEGG: sec:SC0333 hypothetical protein
YP_003506371.1	PRIAM: Type III site-specific deoxyribonuclease; PFAM: type III restriction protein res subunit; InterPro IPR006935; KEGG: asu:Asuc_0674 type III restriction protein res subunit; COGs: COG3587 Restriction endonuclease; SPTR: A5KSS2 Type III restriction enzyme, res subunit; PFAM: Type III restriction enzyme, res subunit
YP_003506372.1	PRIAM: Site-specific DNA-methyltransferase (adenine-specific); PFAM: DNA methylase N-4/N-6 domain protein; InterPro IPR001091:IPR002295:IPR002941:IPR002052; KEGG: msl:Msil_1946 site-specific DNA-methyltransferase (adenine-specific); COGs: COG2189 Adenine specific DNA methylase Mod; SPTR: A0ZFK1 Site-specific DNA-methyltransferase (Adenine-specific); PFAM: DNA methylase
YP_003506373.1	KEGG: mxa:MXAN_0652 hypothetical protein; SPTR: A1HR69 Putative uncharacterized protein
YP_003506374.1	KEGG: ade:Adeh_2155 hypothetical protein
YP_003506375.1	PFAM: Gp37Gp68 family protein; SPTR: A0ZIG7 Phage protein; InterPro IPR011101; COGs: COG4422 Bacteriophage protein gp37; KEGG: sus:Acid_6594 phage Gp37Gp68 family protein; PFAM: Phage protein Gp37/Gp68
YP_003506376.1	PFAM: integrase family protein; SPTR: B5IEN2 Site-specific recombinase, phage integrase family protein; InterPro IPR002104; COGs: COG4974 Site-specific recombinase XerD; KEGG: cak:Caul_5294 integrase family protein; PFAM: Phage integrase family
YP_003506377.1	KEGG: aba:Acid345_1066 hypothetical protein; SPTR: O76602 Putative uncharacterized protein
YP_003506378.1	InterPro IPR001367; PFAM: iron dependent repressor; PFAM: Iron dependent repressor, N-terminal DNA binding domain
YP_003506379.1	PFAM: UvrD/REP helicase; plasmid stabilization system; SPTR: A0Z9T6 Putative DNA helicase; InterPro IPR007712:IPR000212:IPR014016; COGs: COG0210 Superfamily I DNA and RNA helicase; KEGG: vei:Veis_4174 UvrD/REP helicase; PFAM: UvrD/REP helicase; Plasmid stabilisation system protein
YP_003506380.1	KEGG: LL5 beta protein, putative; SPTR: Q16FM5 LL5 beta protein, putative
YP_003506381.1	COGs: COG0514 Superfamily II DNA helicase; InterProIPR001650:IPR011545:IPR014001:IPR014021:IPR 004589; TIGRFAM: ATP-dependent DNA helicase, RecQ family; KEGG: slo:Shew_3474 ATP-dependent DNA helicase RecQ; SMART: DEAD-like helicase ; helicase domain protein; SPTR: A0Z0Y2 Putative uncharacterized protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; PFAM: DEAD/DEAH box helicase; Helicase conserved C-terminal domain; TIGRFAM: ATP-dependent DNA helicase, RecQ family
YP_003506382.1	PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; InterPro IPR001650:IPR011545:IPR014001:IPR014021; KEGG: bsu:BSU22220 hypothetical protein; COGs: COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster; SPTR: A2SR89 DEAD/DEAH box helicase domain protein; PFAM: Domain of unknown function (DUF1998); DEAD/DEAH box helicase; Helicase conserved C-terminal domain; haloacid dehalogenase-like hydrolase
YP_003506384.1	PFAM: Excalibur domain protein; nuclease (SNase domain protein); SMART: nuclease (SNase domain protein); InterPro IPR006021:IPR008613; KEGG: sal:Sala_0134 excalibur; COGs: COG1525 Micrococcal nuclease (thermonuclease) homologs; SPTR: A6FRL0 Succinoglycan biosynthesis protein; PFAM: Staphylococcal nuclease homologue; Excalibur calcium-binding domain
YP_003506386.1	KEGG: cak:Caul_0837 hypothetical protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2191)
YP_003506387.1	PFAM: PilT protein domain protein; SPTR: A7C4P8 PilT-like protein; InterPro IPR002716; COGs: COG1487 nucleic acid-binding protein contains PIN domain; KEGG: PilT protein domain protein ; K07062; PFAM: PIN domain
YP_003506388.1	PFAM: protein of unknown function DUF82; SPTR: A7BRJ7 Protein conserved in bacteria; InterPro IPR002782; COGs: COG4634 conserved hypothetical protein; KEGG: afr:AFE_1368 hypothetical protein; PFAM: Protein of unknown function DUF82
YP_003506389.1	PFAM: protein of unknown function DUF433; SPTR: A0YJ05 Putative uncharacterized protein; InterPro IPR007367; COGs: COG2442 conserved hypothetical protein; KEGG: afr:AFE_1367 hypothetical protein; PFAM: Protein of unknown function (DUF433)
YP_003506390.1	KEGG: abb:ABBFA_001366 transcriptional regulatory protein, C terminal family protein; SPTR: A3KKB5 Putative transcriptional regulator
YP_003506391.1	PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593:IPR017871:IPR017940; KEGG: rsq:Rsph17025_2353 ABC transporter related; COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; SPTR: A1ZE49 ABC transporter permease and ATP-binding protein; PFAM: ABC transporter
YP_003506392.1	PFAM: major facilitator superfamily MFS_1; InterPro IPR011701; KEGG: mag:amb4349 major facilitator superfamily permease; SPTR: A6CNJ3 Macrolide-efflux protein; PFAM: Major Facilitator Superfamily
YP_003506393.1	PRIAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Xylose isomerase domain protein TIM barrel; Glyoxalase/bleomycin resistance protein/dioxygenase; InterPro IPR004360:IPR012307; KEGG: csa:Csal_0292 4-hydroxyphenylpyruvate dioxygenase; COGs: COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins; SPTR: A3VA67 Putative uncharacterized protein; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Xylose isomerase-like TIM barrel; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase
YP_003506394.1	PFAM: Alcohol dehydrogenase GroES domain protein; Ketopantoate reductase ApbA/PanE domain protein; Alcohol dehydrogenase zinc-binding domain protein; SPTR: A8MA90 Alcohol dehydrogenase GroES domain protein; InterPro IPR013332:IPR013154:IPR013149; COGs: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenase; KEGG: sil:SPO0596 sorbitol dehydrogenase, putative; PFAM: Zinc-binding dehydrogenase; Alcohol dehydrogenase GroES-like domain
YP_003506395.1	PFAM: protein of unknown function DUF112 transmembrane; SPTR: A3K879 Putative uncharacterized protein; InterPro IPR002823; COGs: COG3333 conserved hypothetical protein; KEGG: csa:Csal_0071 protein of unknown function DUF112, transmembrane; PFAM: Integral membrane protein DUF112
YP_003506396.1	InterPro IPR001196; KEGG: vei:Veis_4540 hypothetical protein
YP_003506397.1	KEGG: met:M446_4284 hypothetical protein; COGs: COG3181 conserved hypothetical protein; PFAM: conserved hypothetical protein; SPTR: A3JUR5 Putative uncharacterized protein; InterPro IPR005064; PFAM: Bordetella uptake gene (bug) product
YP_003506398.1	PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; InterPro IPR000524:IPR011711; KEGG: bbr:BB3957 putative transcriptional regulator; COGs: COG1802 Transcriptional regulators; SPTR: A6BG57 Putative uncharacterized protein; PFAM: FCD domain; Bacterial regulatory proteins, gntR family
YP_003506399.1	PFAM: NUDIX hydrolase; InterPro IPR000086; KEGG: mxa:MXAN_4891 hydrolase, NUDIX family; SPTR: A2VMT1 Putative uncharacterized protein; PFAM: NUDIX domain
YP_003506400.1	PFAM: peptidase M50; CBS domain containing protein; SMART: CBS domain containing protein; InterPro IPR000644:IPR008915; KEGG: afw:Anae109_3134 peptidase M50; COGs: COG1994 Zn-dependent protease; SPTR: Q3IUS4 Probable metalloprotease/ CBS domain protein; PFAM: CBS domain pair; Peptidase family M50
YP_003506401.1	PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; SPTR: A0Z9P4 Putative uncharacterized protein; InterPro IPR000878:IPR008189; COGs: COG0313 methyltransferase; KEGG: mxa:MXAN_3552 tetrapyrrole methylase family protein; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: conserved hypothetical protein TIGR00096
YP_003506402.1	TIGRFAM: 6-phosphofructokinase; PRIAM: 6-phosphofructokinase; PFAM: phosphofructokinase; InterPro IPR000023:IPR015912:IPR012828; KEGG: bba:Bd3384 hypothetical protein; COGs: COG0205 6-phosphofructokinase; SPTR: Q72H98 6-phosphofructokinase; PFAM: Phosphofructokinase; TIGRFAM: 6-phosphofructokinase
YP_003506403.1	TIGRFAM: peptide methionine sulfoxide reductase; PRIAM: Peptide-methionine-(S)-S-oxide reductase; PFAM: Methionine sulfoxide reductase A; InterPro IPR002569; KEGG: har:HEAR2602 peptide methionine sulfoxide reductase (protein-methionine-S-oxide reductase) (peptide Met(O) reductase); COGs: COG0225 Peptide methionine sulfoxide reductase; SPTR: Q97Y45 Peptide methionine sulfoxide reductase msrA; PFAM: Peptide methionine sulfoxide reductase; TIGRFAM: methionine-S-sulfoxide reductase
YP_003506404.1	SPTR: A7AHD9 Putative uncharacterized protein; KEGG: bha:BH0863 ribonuclease H-related protein; COGs: COG3341 double-stranded RNA/RNA-DNA hybrid binding protein; InterPro IPR002156
YP_003506405.1	KEGG: mlo:mll9669 hypothetical protein
YP_003506406.1	TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; PRIAM: Amino-acid N-acetyltransferase; PFAM: arginine biosynthesis protein ArgJ; InterPro IPR002813; KEGG: afw:Anae109_0632 arginine biosynthesis bifunctional protein ArgJ; COGs: COG1364 N-acetylglutamate synthase (N-acetylornithine aminotransferase); SPTR: P96137 Glutamate N-acetyltransferase; PFAM: ArgJ family; TIGRFAM: glutamate N-acetyltransferase/amino-acid acetyltransferase
YP_003506407.1	KEGG: azc:AZC_2879 major facilitator superfamily permease
YP_003506408.1	KEGG: gur:Gura_0756 polymorphic outer membrane protein
YP_003506409.1	PFAM: ABC-3 protein; SPTR: A3V742 Zinc ABC transporter, permease protein; InterPro IPR001626; COGs: COG1108 ABC-type Mn2+/Zn2+ transport systems permease components; KEGG: bsu:BSU30740 manganese ABC transporter; PFAM: ABC 3 transport family
YP_003506410.1	PFAM: ABC-3 protein; SPTR: A6ELK8 Putative uncharacterized protein; InterPro IPR001626; COGs: COG1108 ABC-type Mn2+/Zn2+ transport systems permease components; KEGG: bsu:BSU30750 manganese ABC transporter membrane protein; PFAM: ABC 3 transport family
YP_003506411.1	PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593:IPR017871; KEGG: sil:SPO3365 zinc/manganese/iron ABC transporter, ATP-binding protein; COGs: COG1121 ABC-type Mn/Zn transport systems ATPase component; SPTR: A4BY27 Zinc ABC transporter, ATP-binding protein; PFAM: ABC transporter
YP_003506412.1	PFAM: periplasmic solute binding protein; SPTR: A2TQ92 Zinc ABC transporter, periplasmic zinc-binding protein; InterPro IPR006129:IPR006128:IPR006127; COGs: COG0803 ABC-type metal ion transport system periplasmic component/surface adhesin; KEGG: tcx:Tcr_2149 periplasmic solute binding protein; PFAM: Periplasmic solute binding protein family
YP_003506413.1	PFAM: iron dependent repressor; FeoA family protein; regulatory protein MarR; SMART: iron dependent repressor; InterPro IPR000835:IPR007167:IPR001367; KEGG: tcx:Tcr_0904 iron dependent repressor; COGs: COG1321 Mn-dependent transcriptional regulator protein; SPTR: Q9HRU8 Transcription repressor; PFAM: FeoA domain; Iron dependent repressor, N-terminal DNA binding domain; Iron dependent repressor, metal binding and dimerisation domain
YP_003506414.1	KEGG: scl:sce1693 hypothetical protein; SPTR: A6NX74 Putative uncharacterized protein
YP_003506415.1	TIGRFAM: glucose-1-phosphate thymidyltransferase; PFAM: Nucleotidyl transferase; InterPro IPR005835:IPR005908; KEGG: bcr:BCAH187_A1373 putative glucose-1-phosphate thymidylyltransferase; COGs: COG1209 dTDP-glucose pyrophosphorylase; SPTR: B7R2B2 Glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate thymidylylransferase, long form
YP_003506416.1	PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; InterPro IPR000843:IPR001761; KEGG: mmw:Mmwyl1_0026 regulatory protein LacI; COGs: COG1609 Transcriptional regulators; SPTR: A3KKC2 Putative lacI-family transcriptional regulator; PFAM: Periplasmic binding proteins and sugar binding domain of the LacI family; Bacterial regulatory proteins, lacI family
YP_003506417.1	PFAM: extracellular solute-binding protein family 1; SPTR: A1RZC0 Extracellular solute-binding protein, family 1; InterPro IPR006059; COGs: COG1653 ABC-type sugar transport system periplasmic component; KEGG: sme:SMa1364 ABC transporter, periplasmic solute-binding protein; PFAM: Bacterial extracellular solute-binding protein
YP_003506418.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A3TKH1 ABC-type sugar transport systems, permease component; InterPro IPR000515; COGs: COG1175 ABC-type sugar transport systems permease components; KEGG: sme:SMa1363 ABC transporter, permease; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003506419.1	COGs: COG0395 ABC-type sugar transport system permease component; InterPro IPR000515; KEGG: sme:SMa1362 putative inner-membrane permease; SPTR: A3TKH0 Sugar permease of ABC transporter system; PFAM: binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003506420.1	PFAM: Amylo-alpha-16-glucosidase; SPTR: A3WRY8 Amylo-alpha-1,6-glucosidase; InterPro IPR010401; COGs: COG3408 Glycogen debranching protein; KEGG: gdj:Gdia_2125 amylo-alpha-16-glucosidase; PFAM: Amylo-alpha-1,6-glucosidase
YP_003506421.1	PFAM: LmbE family protein; SPTR: A4KG97 N-acetyl-1-D-myo-inosityl-2-amino-2-deoxy-alpha-D- glucopyranoside deacetylase mshB; InterPro IPR003737; COGs: COG2120 conserved hypothetical protein LmbE homologs; KEGG: bha:BH3320 hypothetical protein; PFAM: GlcNAc-PI de-N-acetylase
YP_003506422.1	PFAM: Polynucleotide adenylyltransferase region; SPTR: A6DP87 Putative poly(A) polymerase; InterPro IPR002646; COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; KEGG: scl:sce1090 hypothetical protein; PFAM: Poly A polymerase head domain; TIGRFAM: uncharacterized domain HDIG
YP_003506423.1	PFAM: alpha/beta hydrolase fold; SPTR: A4A1W1 Alpha/beta hydrolase fold protein; InterPro IPR000073; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); KEGG: ank:AnaeK_3910 alpha/beta hydrolase fold; PFAM: alpha/beta hydrolase fold
YP_003506424.1	SMART: Tetratricopeptide domain protein; InterPro IPR013026; KEGG: hypothetical protein; SPTR: A7T5N6 Predicted protein
YP_003506425.1	KEGG: hypothetical protein; SPTR: B8XNP4 Platelet glycoprotein Ib alpha polypeptide; PFAM: PEGA domain
YP_003506426.1	PRIAM: 5-carboxymethyl-2-hydroxymuconate Delta-isomerase; PFAM: fumarylacetoacetate (FAA) hydrolase; InterPro IPR002529; KEGG: scl:sce2870 fumarylacetoacetase; COGs: COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase (catechol pathway); SPTR: A4KKP9 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF2437); Fumarylacetoacetate (FAA) hydrolase family
YP_003506427.1	PFAM: sodium/hydrogen exchanger; SPTR: A3CTZ1 Sodium/hydrogen exchanger; InterPro IPR006153; COGs: COG3263 NhaP-type Na+/H+ and K+/H+ antiporter with a unique C-terminal domain; KEGG: gsu:GSU1203 potassium/proton antiporter; PFAM: Sodium/hydrogen exchanger family
YP_003506428.1	PFAM: Fibronectin-binding A domain protein; protein of unknown function DUF814; SPTR: A6P056 Putative uncharacterized protein; InterPro IPR008616:IPR008532; COGs: COG1293 RNA-binding protein homologous to eukaryotic snRNP; KEGG: bsu:BSU15640 hypothetical protein; PFAM: Domain of unknown function (DUF814); Fibronectin-binding protein A N-terminus (FbpA)
YP_003506429.1	KEGG: hypothetical protein; SPTR: A0NU04 Putative uncharacterized protein
YP_003506430.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; InterProIPR004358:IPR003594:IPR003661:IPR003660:IPR 005467; KEGG: ppf:Pput_1406 integral membrane sensor signal transduction histidine kinase; COGs: COG0642 Signal transduction histidine kinase; SPTR: A6P0U2 Sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; HAMP domain
YP_003506431.1	PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; InterPro IPR001789:IPR001867:IPR005829; KEGG: bpy:Bphyt_2190 two component transcriptional regulator, winged helix family; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; SPTR: A3IMT2 Two-component hybrid sensor and regulator; PFAM: Transcriptional regulatory protein, C terminal; Response regulator receiver domain
YP_003506432.1	PRIAM: tRNA (adenine-N(1)-)-methyltransferase; PFAM: tRNA methyltransferase complex GCD14 subunit; protein-L-isoaspartate(D-aspartate) O-methyltransferase; InterPro IPR014816:IPR000682; KEGG: hypothetical protein; COGs: COG2519 tRNA(1-methyladenosine) methyltransferase and related methyltransferase; SPTR: Q8GBB2 tRNA (adenine-N(1)-)-methyltransferase; PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
YP_003506433.1	InterPro IPR012902; KEGG: sat:SYN_01761 pilin assembly protein; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain
YP_003506434.1	InterPro IPR012902:IPR001120; KEGG: vfm:VFMJ11_0359 MshD; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain
YP_003506435.1	InterPro IPR012902; KEGG: vei:Veis_2823 putative transmembrane protein; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain
YP_003506436.1	KEGG: bcm:Bcenmc03_6355 outer membrane autotransporter
YP_003506437.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; InterProIPR004358:IPR003594:IPR003661:IPR003660:IPR 005467; KEGG: acp:A2cp1_3107 histidine kinase; COGs: COG2205 Osmosensitive K+ channel histidine kinase; SPTR: P0A4I8 Sensor protein cutS; PFAM: His Kinase A (phosphoacceptor) domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_003506438.1	InterPro IPR002416:IPR012902:IPR001120; KEGG: maq:Maqu_0866 putative type-4 fimbrial pilin related signal peptide protein; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain
YP_003506439.1	InterPro IPR001120:IPR012902; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain
YP_003506440.1	InterPro IPR012902; KEGG: lch:Lcho_2930 type IV pilus assembly protein; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain
YP_003506442.1	PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; InterPro IPR000792:IPR013249:IPR001789; KEGG: pag:PLES_10991 two-component response regulator NarL; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; SPTR: A3TPE2 Two-component system, regulatory protein; PFAM: Bacterial regulatory proteins, luxR family; Response regulator receiver domain
YP_003506443.1	InterPro IPR002048; KEGG: oan:Oant_4858 outer membrane autotransporter barrel domain protein
YP_003506444.1	InterPro IPR012902:IPR001120; KEGG: mms:mma_3359 type IV pilus assembly related protein; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain
YP_003506445.1	InterPro IPR012902; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain
YP_003506446.1	InterPro IPR001120:IPR012902; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain
YP_003506447.1	TIGRFAM: GTP-binding protein LepA; small GTP-binding protein; PFAM: GTP-binding protein LepA domain protein; elongation factor G domain protein; elongation factor Tu domain 2 protein; protein synthesis factor GTP-binding; InterProIPR000795:IPR000640:IPR013842:IPR004161:IPR 006297:IPR005225; KEGG: bha:BH1342 GTP-binding protein LepA; COGs: COG0481 Membrane GTPase LepA; SPTR: Q5SKA7 GTP-binding protein lepA; PFAM: Elongation factor G C-terminus; GTP-binding protein LepA C-terminus; Elongation factor Tu domain 2; Elongation factor Tu GTP binding domain; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein domain
YP_003506448.1	PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; InterPro IPR001638:IPR001320; KEGG: mes:Meso_3149 extracellular solute-binding protein, family 3; COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain; SPTR: A6BRF3 Putative cystine-binding periplasmic protein; PFAM: Bacterial extracellular solute-binding proteins, family 3
YP_003506449.1	PFAM: Cold-shock protein DNA-binding; Ribonuclease B OB region domain; SMART: Cold shock protein; InterPro IPR002059:IPR013223:IPR011129; KEGG: bcy:Bcer98_2221 cold-shock DNA-binding domain-containing protein; COGs: COG1278 Cold shock protein; SPTR: A6CJW0 Cold-shock domain family protein; PFAM: 'Cold-shock' DNA-binding domain
YP_003506450.1	TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; InterPro IPR006163:IPR006162:IPR003231; KEGG: hiq:CGSHiGG_03365 acyl carrier protein; COGs: COG0236 Acyl carrier protein; SPTR: Q1J195 Acyl carrier protein; PFAM: Phosphopantetheine attachment site; TIGRFAM: acyl carrier protein
YP_003506451.1	TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; Male sterility domain; InterProIPR002347:IPR002424:IPR002198:IPR013120:IPR 013968:IPR011284; KEGG: bha:BH2491 3-oxoacyl-(acyl-carrier protein) reductase; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); SPTR: A6CS72 3-ketoacyl-(Acyl-carrier-protein) reductase; PFAM: short chain dehydrogenase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase
YP_003506452.1	COGs: COG0331 (acyl-carrier-protein) S-malonyltransferase; InterPro IPR014043:IPR004410; KEGG: mxa:MXAN_4771 malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; SPTR: A3XC60 Acyl-carrier-protein S-malonyltransferase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase domain; TIGRFAM: malonyl CoA-acyl carrier protein transacylase
YP_003506453.1	TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; InterPro IPR013751:IPR013747:IPR004655; KEGG: bcz:BCZK1071 3-oxoacyl-(acyl carrier protein) synthase III; COGs: COG0332 3-oxoacyl-(acyl-carrier-protein); SPTR: Q9RT23 3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 1; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III
YP_003506454.1	TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; InterPro IPR002677; KEGG: swi:Swit_3554 50S ribosomal protein L32; COGs: COG0333 Ribosomal protein L32; SPTR: P80339 50S ribosomal protein L32; PFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32
YP_003506455.1	PFAM: protein of unknown function DUF62; SPTR: A3IPF2 Putative uncharacterized protein; InterPro IPR002747:IPR013838; COGs: COG1912 conserved hypothetical protein; KEGG: sfu:Sfum_1405 protein of unknown function DUF62; PFAM: Protein of unknown function DUF62
YP_003506456.1	SPTR: A4BSK8 TPR repeat protein; InterPro IPR013026; KEGG: noc:Noc_1987 TPR repeat-containing protein
YP_003506457.1	SPTR: A4BH61 Putative uncharacterized protein; InterPro IPR013026; KEGG: pol:Bpro_4026 hypothetical protein
YP_003506458.1	PFAM: protein of unknown function DUF88; SPTR: Q3IP23 Putative uncharacterized protein; InterPro IPR002790; COGs: COG1432 conserved hypothetical protein; KEGG: vsp:VS_II0673 hypothetical protein; PFAM: Protein of unknown function DUF88
YP_003506459.1	TIGRFAM:S-adenosylmethionine/tRNA-ribosyltransferas e-isomerase; PFAM: Queuosine biosynthesis protein; InterPro IPR003699; KEGG: pca:Pcar_1895 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; COGs: COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase); SPTR: Q5SMH0 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; TIGRFAM: S-adenosylmethionine:tRNA ribosyltransferase-isomerase
YP_003506460.1	TIGRFAM: serine O-acetyltransferase; PFAM: transferase hexapeptide repeat containing protein; InterPro IPR001451:IPR005881; KEGG: pae:PA3816 O-acetylserine synthase; COGs: COG1045 Serine acetyltransferase; SPTR: A3LER7 O-acetylserine synthase; PFAM: Bacterial transferase hexapeptide (three repeats); TIGRFAM: serine O-acetyltransferase
YP_003506461.1	PFAM: protein of unknown function DUF28; SPTR: Q5SK31 UPF0082 protein TTHA0821; InterPro IPR002876; COGs: COG0217 conserved hypothetical protein; KEGG: glo:Glov_1245 protein of unknown function DUF28; PFAM: Domain of unknown function DUF28; TIGRFAM: conserved hypothetical protein TIGR01033
YP_003506462.1	TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; SPTR: A1HN83 Beta-ketoacyl synthase; KEGG: gbm:Gbem_3104 3-oxoacyl-(acyl-carrier-protein) synthase 2; COGs: COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; InterPro IPR014031:IPR014030:IPR017568; PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2
YP_003506463.1	PFAM: peptidase S41; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; InterPro IPR005151:IPR001478; KEGG: sus:Acid_6221 carboxyl-terminal protease; COGs: COG0793 Periplasmic protease; SPTR: A7CAG4 Carboxyl-terminal protease; PFAM: Peptidase family S41
YP_003506464.1	COGs: COG0793 Periplasmic protease; InterPro IPR001478:IPR005151; KEGG: mca:MCA2533 carboxyl-terminal protease; SMART: PDZ/DHR/GLGF domain protein; peptidase S41; SPTR: A4CSB8 Putative uncharacterized protein; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; PFAM: PDZ domain (Also known as DHR or GLGF); Peptidase family S41; TIGRFAM: C-terminal peptidase (prc)
YP_003506465.1	PFAM: GCN5-related N-acetyltransferase; InterPro IPR000182; KEGG: afw:Anae109_0715 GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_003506466.1	SPTR: O59564 282aa long hypothetical dehydrogenase; InterPro IPR002347; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); KEGG: met:M446_5987 short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase
YP_003506467.1	TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593:IPR005895; KEGG: sme:SMa1184 NosF ATPase; COGs: COG1131 ABC-type multidrug transport system ATPase component; SPTR: A6GFN6 Putative uncharacterized protein; PFAM: ABC transporter; TIGRFAM: heme ABC exporter, ATP-binding protein CcmA
YP_003506468.1	PFAM: cytochrome c biogenesis protein transmembrane region; SPTR: A3SRT8 CcdA, cytochrome c-type biogenesis protein CdcA; InterPro IPR003834; COGs: COG0785 Cytochrome c biogenesis protein; KEGG: maq:Maqu_3250 cytochrome c biogenesis protein, transmembrane region; PFAM: Cytochrome C biogenesis protein transmembrane region
YP_003506469.1	PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593:IPR017871; KEGG: pmy:Pmen_1328 ABC transporter related; COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; SPTR: Q8U0R5 Sugar-binding transport ATP-binding protein; PFAM: ABC transporter
YP_003506470.1	TIGRFAM: thiamine pyrophosphokinase; PFAM: Thiamin pyrophosphokinase catalytic region; InterPro IPR007371:IPR006282; KEGG: ret:RHE_CH04030 hypothetical protein; COGs: COG1564 Thiamine pyrophosphokinase; SPTR: A8RWT7 Putative uncharacterized protein; PFAM: Thiamin pyrophosphokinase, catalytic domain; TIGRFAM: thiamine pyrophosphokinase
YP_003506473.1	PFAM: peptidase M28; protease-associated PA domain protein; peptidase M20; SPTR: A2V759 Aminopeptidase; InterPro IPR003137:IPR007484:IPR002933; COGs: COG2234 aminopeptidase; KEGG: bha:BH3861 aminopeptidase; PFAM: Peptidase family M20/M25/M40; PA domain
YP_003506474.1	PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; SPTR: B3LQP1 Putative uncharacterized protein; InterPro IPR001926:IPR000634; COGs: COG1171 Threonine dehydratase; KEGG: aav:Aave_3217 pyridoxal-5'-phosphate-dependent enzyme, beta subunit; PFAM: Pyridoxal-phosphate dependent enzyme
YP_003506476.1	TIGRFAM: RNA modification enzyme, MiaB family; PFAM: Protein of unknown function UPF0004 ; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; InterProIPR007197:IPR013848:IPR006638:IPR002792:IPR 005839; KEGG: gsu:GSU2568 MiaB-like tRNA modifying enzyme; COGs: COG0621 2-methylthioadenine synthetase; SPTR: A1HR14 RNA modification enzyme, MiaB family; PFAM: Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme
YP_003506477.1	KEGG: scl:sce7657 hypothetical protein
YP_003506478.1	PFAM: histidine triad (HIT) protein; SPTR: A7C7G6 Histidine triad (HIT) protein; InterPro IPR001310; COGs: COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; KEGG: xca:xccb100_3356 histidine triad-like protein; PFAM: HIT domain
YP_003506479.1	PFAM: metallophosphoesterase; InterPro IPR004843; KEGG: sus:Acid_0081 metallophosphoesterase; SPTR: A3YZQ5 Putative purple acid phosphatase; PFAM: Calcineurin-like phosphoesterase
YP_003506480.1	InterPro IPR003729; PFAM: protein of unknown function DUF151; COGs: COG1259 conserved hypothetical protein; KEGG: dvu:DVU0983 hypothetical protein; SPTR: A0YTA3 Putative uncharacterized protein; PFAM: Uncharacterised ACR, COG1259
YP_003506481.1	PFAM: phosphoribosyltransferase; SPTR: A5TS89 Adenine phosphoribosyltransferase; InterPro IPR000836; COGs: COG0503 Adenine/guanine phosphoribosyltransferase and related PRPP-binding protein; KEGG: afr:AFE_0540 adenine phosphoribosyltransferase, putative; PFAM: Phosphoribosyl transferase domain
YP_003506482.1	PFAM: phosphoribosyltransferase; SPTR: A5TS89 Adenine phosphoribosyltransferase; InterPro IPR000836; COGs: COG0503 Adenine/guanine phosphoribosyltransferase and related PRPP-binding protein; KEGG: dps:DP1516 adenine phosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain
YP_003506483.1	PFAM: phospholipase/Carboxylesterase; SPTR: A6C3M0 Putative uncharacterized protein; InterPro IPR003140; COGs: COG4099 peptidase; KEGG: sml:Smlt1102 hypothetical protein; PFAM: Phospholipase/Carboxylesterase
YP_003506484.1	PFAM: thioesterase superfamily protein; SPTR: A3LF67 Putative uncharacterized protein; InterPro IPR006683:IPR003736; COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; KEGG: pap:PSPA7_1137 hypothetical protein; PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1
YP_003506485.1	TIGRFAM: methylmalonyl-CoA mutase, large subunit; PRIAM: Methylmalonyl-CoA mutase; PFAM: methylmalonyl-CoA mutase; InterPro IPR006099:IPR006098; KEGG: aba:Acid345_1454 methylmalonyl-CoA mutase; COGs: COG1884 Methylmalonyl-CoA mutase N-terminal domain/subunit; SPTR: B5ISK6 Methylmalonyl-CoA mutase N-terminal domain subfamily; PFAM: Methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain
YP_003506486.1	PFAM: TQO small subunit DoxD; DoxX family protein; InterPro IPR007301:IPR011637; KEGG: bat:BAS0169 hypothetical protein; SPTR: A3ICE0 Putative uncharacterized protein; PFAM: DoxX
YP_003506487.1	TIGRFAM: SpoIID/LytB domain protein; PFAM: Stage II sporulation D domain protein; InterPro IPR013693:IPR013486; KEGG: mxa:MXAN_3045 putative lipoprotein; COGs: COG2385 Sporulation protein and related protein; SPTR: A8RMT8 Putative uncharacterized protein; PFAM: Stage II sporulation protein; TIGRFAM: SpoIID/LytB domain
YP_003506488.1	COGs: COG1381 Recombinational DNA repair protein (RecF pathway)
YP_003506490.1	TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; InterPro IPR000577:IPR006000; KEGG: aba:Acid345_0904 xylulokinase; COGs: COG1070 Sugar (pentulose and hexulose) kinase; SPTR: A4A0L8 Xylulose kinase; PFAM: FGGY family of carbohydrate kinases, C-terminal domain; FGGY family of carbohydrate kinases, N-terminal domain; TIGRFAM: D-xylulose kinase
YP_003506491.1	TIGRFAM: xylose isomerase; PRIAM: Xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; InterPro IPR001998:IPR012307:IPR013453; KEGG: aba:Acid345_0903 xylose isomerase; COGs: COG2115 Xylose isomerase; SPTR: P26997 Xylose isomerase; PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: xylose isomerase, Arthrobacter type
YP_003506492.1	PFAM: ROK family protein; SPTR: A3KKB3 Putative xylose repressor; InterPro IPR000600; COGs: COG1940 Transcriptional regulator/sugar kinase; KEGG: scl:sce7667 ROK family transcriptional regulator; PFAM: ROK family
YP_003506493.1	PFAM: protein of unknown function DUF305; SPTR: A3TIC0 Putative secreted protein; InterPro IPR005183; COGs: COG3544 conserved hypothetical protein; KEGG: eli:ELI_14360 putative secreted protein; PFAM: Domain of unknown function (DUF305)
YP_003506494.1	KEGG: mxa:MXAN_0602 cytochrome oxidase assembly protein; COGs: COG1612 Uncharacterized protein required for cytochrome oxidase assembly; SPTR: Q72H22 Protoheme IX farnesyltransferase; PFAM: cytochrome oxidase assembly; InterPro IPR003780; PFAM: Cytochrome oxidase assembly protein
YP_003506495.1	TIGRFAM: protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; InterPro IPR000537:IPR006369; KEGG: maq:Maqu_0070 protoheme IX farnesyltransferase; COGs: COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor); SPTR: Q5SLI3 Protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase family; TIGRFAM: protoheme IX farnesyltransferase
YP_003506496.1	TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome C oxidase subunit II transmembrane region; cytochrome c class I; InterProIPR002429:IPR011759:IPR003088:IPR001505:IPR 009056:IPR014222; KEGG: bha:BH2615 cytochrome caa3 oxidase (subunit II); COGs: COG1622 Heme/copper-type cytochrome/quinol oxidase subunit 2; SPTR: A2U7I4 Cytochrome c oxidase subunit 2; PFAM: Cytochrome C oxidase subunit II, transmembrane domain; Cytochrome c; Cytochrome C oxidase subunit II, periplasmic domain; TIGRFAM: cytochrome c oxidase, subunit II
YP_003506497.1	TIGRFAM: cytochrome c oxidase, subunit I; PRIAM: Cytochrome-c oxidase; PFAM: cytochrome c oxidase subunit I; cytochrome c oxidase subunit III; InterPro IPR000883:IPR000298:IPR014241; KEGG: bac:BamMC406_6287 cytochrome c oxidase, subunit I; COGs: COG0843 Heme/copper-type cytochrome/quinol oxidase subunit 1; SPTR: P98005 Cytochrome c oxidase polypeptide I+III; PFAM: Cytochrome c oxidase subunit III; Cytochrome C and Quinol oxidase polypeptide I; TIGRFAM: cytochrome c oxidase, subunit I
YP_003506498.1	PFAM: transposase IS4 family protein; InterPro IPR002559; KEGG: tdn:Suden_1713 transposase IS4; SPTR: A1ZSG8 Transposase, IS4; PFAM: Transposase DDE domain
YP_003506506.1	KEGG: ret:RHE_PE00129 hypothetical protein; SPTR: Q64CM9 Putative uncharacterized protein
YP_003506507.1	PRIAM: Choline monooxygenase; PFAM: Rieske [2Fe-2S] domain protein; InterPro IPR005806; KEGG: lpc:LPC_1683 choline monooxygenase; COGs: COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenase large terminal subunit; SPTR: A4AN44 Putative uncharacterized protein; PFAM: Rieske [2Fe-2S] domain
YP_003506508.1	SPTR: A6ZIK8 Bioflim formation-related protein 1
YP_003506509.1	PRIAM: Carboxylesterase; PFAM: Carboxylesterase type B; InterPro IPR002018; KEGG: bsu:BSU34390 para-nitrobenzyl esterase (intracellular esterase B); COGs: COG2272 Carboxylesterase type B; SPTR: P37967 Para-nitrobenzyl esterase; PFAM: Carboxylesterase
YP_003506510.1	SPTR: A6E183 Glycolate oxidase, GlcE subunit; COGs: COG0277 FAD/FMN-containing dehydrogenase; KEGG: bha:BH2136 glycolate oxidase subunit
YP_003506511.1	PFAM: alpha/beta hydrolase fold; SPTR: B5ITW3 Hydrolase, alpha/beta fold family, putative; InterPro IPR003089:IPR000639:IPR000073:IPR002227; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); KEGG: bha:BH2279 hypothetical protein; PFAM: alpha/beta hydrolase fold
YP_003506512.1	PFAM: ferric-uptake regulator; SPTR: A4E7T8 Putative uncharacterized protein; InterPro IPR002481; COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; KEGG: dvm:DvMF_2366 ferric uptake regulator, Fur family; PFAM: Ferric uptake regulator family
YP_003506513.1	TIGRFAM: porphobilinogen deaminase; PRIAM: Hydroxymethylbilane synthase; PFAM: Porphobilinogen deaminase; InterPro IPR000860; KEGG: kpn:KPN_04304 porphobilinogen deaminase; COGs: COG0181 Porphobilinogen deaminase; SPTR: Q5SLE8 Porphobilinogen deaminase; PFAM: Porphobilinogen deaminase, C-terminal domain; Porphobilinogen deaminase, dipyromethane cofactor binding domain; TIGRFAM: porphobilinogen deaminase
YP_003506516.1	TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; InterPro IPR002830; KEGG: sfu:Sfum_0287 UbiD family decarboxylases; COGs: COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylase; SPTR: O67542 Uncharacterized protein aq_1612; PFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: UbiD family decarboxylases
YP_003506518.1	PFAM: protein of unknown function UPF0102; SPTR: Q5SLC1 UPF0102 protein TTHA0372; InterPro IPR003509; COGs: COG0792 endonuclease distantly related to Holliday junction resolvase; KEGG: noc:Noc_0355 hypothetical protein; PFAM: Uncharacterised protein family UPF0102
YP_003506519.1	PFAM: PASTA domain containing protein; SMART: PASTA domain containing protein; InterPro IPR005543; KEGG: dal:Dalk_0555 PASTA domain containing protein; COGs: COG2815 conserved hypothetical protein; SPTR: A3TN16 Tyrosine protein kinase:Serine/threonine protein kinase:PASTA; PFAM: PASTA domain
YP_003506520.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; SPTR: A5WSR1 Hypothetical methyltransferase; InterPro IPR013216:IPR013217; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; KEGG: bph:Bphy_3007 methyltransferase type 11; PFAM: Methyltransferase domain
YP_003506521.1	PFAM: PfkB domain protein; SPTR: A3MS64 PfkB domain protein; InterPro IPR011611; COGs: COG0524 Sugar kinase ribokinase family; KEGG: mrd:Mrad2831_3532 ribokinase-like domain-containing protein; PFAM: pfkB family carbohydrate kinase
YP_003506522.1	SPTR: A7CJ35 AAA ATPase, central domain protein; KEGG: tbd:Tbd_1496 recombination factor protein RarA; SMART: AAA ATPase; InterPro IPR003959:IPR000523:IPR011704:IPR003593; PFAM: AAA ATPase central domain protein; magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; COGs: COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase; PFAM: ATPase family associated with various cellular activities (AAA)
YP_003506523.1	KEGG: dac:Daci_0543 diguanylate cyclase
YP_003506524.1	PFAM: aminotransferase class V; SPTR: A6CB04 Aminotransferase, class V; InterPro IPR000192; COGs: COG0075 Serine-pyruvate aminotransferase/ aspartate aminotransferase; KEGG: ank:AnaeK_3093 aminotransferase class V; PFAM: Aminotransferase class-V
YP_003506525.1	TIGRFAM: chaperone protein DnaJ; PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; DnaJ central domain protein; SMART: heat shock protein DnaJ domain protein; InterProIPR003095:IPR002939:IPR001305:IPR001623:IPR 012724; KEGG: bha:BH1348 heat-shock protein (activation of DnaK); COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; SPTR: Q72GN6 Chaperone protein dnaJ; PFAM: DnaJ central domain (4 repeats); DnaJ C terminal region; DnaJ domain; TIGRFAM: chaperone protein DnaJ
YP_003506527.1	TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; InterPro IPR015590:IPR016160:IPR010061; KEGG: sus:Acid_0680 methylmalonate-semialdehyde dehydrogenase [acylating]; COGs: COG1012 NAD-dependent aldehyde dehydrogenase; SPTR: A3TND9 Methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase family; TIGRFAM: methylmalonic acid semialdehyde dehydrogenase
YP_003506528.1	PFAM: YcfA family protein; InterPro IPR012933; KEGG: rpt:Rpal_4826 YcfA family protein; SPTR: A3IQF4 Putative uncharacterized protein; PFAM: YcfA-like protein
YP_003506529.1	PFAM: Domain of unknown function DUF1902; InterPro IPR015066; KEGG: tgr:Tgr7_1809 domain of unknown function DUF1902; SPTR: A0ZK26 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF1902)
YP_003506530.1	TIGRFAM: YmdA/YtgF protein; metal dependent phophohydrolase; PRIAM: 2',3'-cyclic-nucleotide 2'-phosphodiesterase; PFAM: metal-dependent phosphohydrolase HD sub domain; KH type 1 domain protein; Metal-dependent hydrolase HDOD; InterProIPR004088:IPR006674:IPR013976:IPR004087:IPR 003607:IPR006675:IPR017705; SPTR: A6ZIK0 Putative hydrolase HD domain; KEGG: bcy:Bcer98_2430 phosphodiesterase; COGs: COG1418 HD superfamily hydrolase; SMART: metal-dependent phosphohydrolase HD region; KH domain protein; PFAM: KH domain; HD domain; TIGRFAM: uncharacterized domain HDIG; conserved hypothetical protein YmdA/YtgF
YP_003506531.1	TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase; InterPro IPR001553:IPR013765:IPR003593; KEGG: bha:BH2383 recombinase A; COGs: COG0468 RecA/RadA recombinase; SPTR: P61500 Protein recA; PFAM: recA bacterial DNA recombination protein; TIGRFAM: protein RecA
YP_003506532.1	TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase HXTX; InterPro IPR014051:IPR004175; KEGG: mca:MCA0386 2'-5' RNA ligase, putative; COGs: COG1514 2'-5' RNA ligase; SPTR: A6ZIK2 2'-5' RNA ligase; PFAM: 2',5' RNA ligase family; TIGRFAM: 2'-5' RNA ligase
YP_003506533.1	TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; InterPro IPR008136:IPR001453:IPR008135; KEGG: sus:Acid_1567 competence/damage-inducible protein CinA; COGs: COG1058 nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; SPTR: A6ZIK3 Competence/damage-inducible protein; PFAM: Probable molybdopterin binding domain; Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA N-terminal domain; molybdenum cofactor synthesis domain; competence/damage-inducible protein CinA C-terminal domain
YP_003506534.1	TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; InterPro IPR013977:IPR006222:IPR017703; KEGG: aba:Acid345_2628 glycine cleavage T protein, aminomethyl transferase; COGs: COG0354 aminomethyltransferase related to GcvT; SPTR: A6C2S5 Glycine cleavage T protein, aminomethyl transferase; PFAM: Aminomethyltransferase folate-binding domain; Glycine cleavage T-protein C-terminal barrel domain; TIGRFAM: folate-binding protein YgfZ
YP_003506535.1	TIGRFAM: conserved repeat domain protein; PFAM: protein of unknown function DUF11; InterPro IPR001434:IPR001917; KEGG: scl:sce0119 putative cell surface protein; SPTR: A4CI44 Putative uncharacterized protein; PFAM: Domain of unknown function DUF11; TIGRFAM: conserved repeat domain
YP_003506536.1	KEGG: dal:Dalk_4232 conserved repeat domain protein; SPTR: A3WD51 Putative uncharacterized protein
YP_003506537.1	TIGRFAM: conserved repeat domain protein; PFAM: protein of unknown function DUF11; InterPro IPR001434; KEGG: gbm:Gbem_2718 conserved repeat domain protein; SPTR: A3STQ6 Putative uncharacterized protein; PFAM: Domain of unknown function DUF11; TIGRFAM: conserved repeat domain
YP_003506538.1	TIGRFAM: conserved repeat domain protein; PFAM: protein of unknown function DUF11; InterPro IPR001434; KEGG: dal:Dalk_4231 conserved repeat domain protein; SPTR: A7CV93 Conserved repeat domain; PFAM: Domain of unknown function DUF11; TIGRFAM: conserved repeat domain
YP_003506539.1	COGs: COG4719 conserved hypothetical protein; KEGG: dal:Dalk_4230 conserved repeat domain protein
YP_003506541.1	TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; Amidohydrolase 3; InterPro IPR006680:IPR013108:IPR002195:IPR004722; KEGG: bha:BH2538 dihydroorotase; COGs: COG0044 Dihydroorotase and related cyclic amidohydrolase; SPTR: P96081 Dihydroorotase; PFAM: Amidohydrolase family; TIGRFAM: dihydroorotase, multifunctional complex type
YP_003506542.1	TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; InterPro IPR006130:IPR002082:IPR006132:IPR006131; KEGG: afw:Anae109_2193 aspartate carbamoyltransferase catalytic subunit; COGs: COG0540 Aspartate carbamoyltransferase catalytic chain; SPTR: P96079 Aspartate carbamoyltransferase; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: aspartate carbamoyltransferase
YP_003506543.1	PRIAM: Uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; InterPro IPR000836; KEGG: bsu:BSU15470 pyrimidine regulatory protein PyrR; COGs: COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase; SPTR: Q5SK65 Bifunctional protein pyrR; PFAM: Phosphoribosyl transferase domain
YP_003506544.1	PRIAM: Tagatose-bisphosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; InterPro IPR002915; KEGG: sus:Acid_1436 tagatose-bisphosphate aldolase; COGs: COG3684 Tagatose-1 6-bisphosphate aldolase; SPTR: Q92EB7 Tagatose 1,6-diphosphate aldolase; PFAM: DeoC/LacD family aldolase; TIGRFAM: tagatose 1,6-diphosphate aldolase
YP_003506545.1	PFAM: PfkB domain protein; SPTR: A3V3G0 Putative Fructokinase; InterPro IPR002139:IPR011611:IPR002173; COGs: COG0524 Sugar kinase ribokinase family; KEGG: oan:Oant_0129 PfkB domain protein; PFAM: pfkB family carbohydrate kinase
YP_003506546.1	PFAM: Cupin 2 conserved barrel domain protein; SPTR: A4F0F5 Putative uncharacterized protein; InterPro IPR013096; COGs: COG1917 conserved hypothetical protein contains double-stranded beta-helix domain; KEGG: rpb:RPB_2830 cupin region; PFAM: Cupin domain
YP_003506547.1	PFAM: NADH:flavin oxidoreductase/NADH oxidase; SPTR: A3KXZ4 Putative uncharacterized protein; InterPro IPR001155; COGs: COG1902 NADH:flavin oxidoreductase Old Yellow Enzyme family; KEGG: gme:Gmet_2577 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase / NADH oxidase family
YP_003506548.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; SPTR: A9V8C1 Predicted protein; InterProIPR006090:IPR006092:IPR006091:IPR013107:IPR 006089; COGs: COG1960 Acyl-CoA dehydrogenase; KEGG: mxa:MXAN_5921 acyl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase, N-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, C-terminal domain
YP_003506549.1	SPTR: P94550 Electron transfer flavoprotein subunit beta; KEGG: sat:SYN_02636 electron transfer flavoprotein beta-subunit; PFAM: Electron transfer flavoprotein alpha/beta-subunit; InterPro IPR014730; COGs: COG2086 Electron transfer flavoprotein beta subunit; PFAM: Electron transfer flavoprotein domain
YP_003506550.1	PFAM: Electron transfer flavoprotein alpha subunit ; Electron transfer flavoprotein alpha/beta-subunit; SPTR: P94551 Electron transfer flavoprotein subunit alpha; InterPro IPR014730:IPR014731; COGs: COG2025 Electron transfer flavoprotein alpha subunit; KEGG: bsu:BSU28520 electron transfer flavoprotein (alpha subunit); PFAM: Electron transfer flavoprotein FAD-binding domain; Electron transfer flavoprotein domain
YP_003506551.1	SPTR: A0YJK7 Protein containing ChW-repeats
YP_003506552.1	TIGRFAM: histidinol dehydrogenase; PRIAM: Histidinol dehydrogenase; PFAM: histidinol dehydrogenase; SPTR: P62460 Histidinol dehydrogenase; KEGG: tgr:Tgr7_0745 histidinol dehydrogenase; COGs: COG0141 Histidinol dehydrogenase; InterPro IPR001692; PFAM: Histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase
YP_003506553.1	KEGG: similar to enthoprotin
YP_003506554.1	TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; InterPro IPR000918:IPR006254; KEGG: rce:RC1_2686 isocitrate lyase; COGs: COG2224 Isocitrate lyase; SPTR: A6GHP5 Malate synthase A / isocitrate lyase (Fragment); PFAM: Isocitrate lyase family; TIGRFAM: isocitrate lyase
YP_003506555.1	PFAM: protein of unknown function DUF294 nucleotidyltransferase putative; CBS domain containing protein; cyclic nucleotide-binding; SMART: CBS domain containing protein; InterPro IPR000595:IPR000644:IPR005105; KEGG: ank:AnaeK_3274 putative CBS domain and cyclic nucleotide-regulated nucleotidyltransferase; COGs: COG2905 signal-transduction protein containing cAMP-binding and CBS domains; SPTR: A4EQN7 Nucleotidyltransferase/CBS/cyclic nucleotide-binding domain protein; PFAM: CBS domain pair; Cyclic nucleotide-binding domain; Putative nucleotidyltransferase DUF294; Putative nucleotidyltransferase substrate binding domain
YP_003506556.1	SPTR: A4A8V9 Glutamine amidotransferase, class I; COGs: COG0518 GMP synthase - Glutamine amidotransferase domain; KEGG: lpn:lpg2249 glutamine amidotransferase, class I
YP_003506557.1	PFAM: Aldehyde Dehydrogenase; SPTR: A4BN70 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590:IPR016160; COGs: COG1012 NAD-dependent aldehyde dehydrogenase; KEGG: pmy:Pmen_0677 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase family
YP_003506558.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; SPTR: Q54PL1 Putative uncharacterized protein; InterPro IPR002347:IPR002198:IPR013968; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); KEGG: hypothetical protein; PFAM: short chain dehydrogenase
YP_003506559.1	PRIAM: Glutamate--ammonia ligase; PFAM: glutamine synthetase catalytic region; InterPro IPR008146; KEGG: hypothetical protein; COGs: COG0174 Glutamine synthetase; SPTR: A9T1V3 Predicted protein; PFAM: Glutamine synthetase, catalytic domain
YP_003506560.1	TIGRFAM: ethanolamine transproter; PFAM: amino acid permease-associated region; InterPro IPR004841:IPR004757; KEGG: sus:Acid_3825 amino acid permease-associated region; COGs: COG1113 Gamma-aminobutyrate permease and related permease; SPTR: A4AEZ3 ABC transporter, membrane spanning protein (Amino acid); PFAM: Amino acid permease; TIGRFAM: ethanolamine permease
YP_003506561.1	PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; InterPro IPR000524:IPR004839; KEGG: spe:Spro_3347 transcriptional regulator; COGs: COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; SPTR: A3IE74 Transcriptional regulator, GntR family protein; PFAM: Aminotransferase class I and II; Bacterial regulatory proteins, gntR family
YP_003506562.1	KEGG: bha:BH0550 ABC transporter ATP-binding protein; COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; SPTR: A7VVL3 Putative uncharacterized protein; PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593:IPR017871; PFAM: ABC transporter
YP_003506563.1	PFAM: protein of unknown function DUF205; SPTR: Q9RS57 UPF0078 membrane protein DR_2270; InterPro IPR003811; COGs: COG0344 membrane protein; KEGG: bha:BH1639 hypothetical protein; PFAM: Domain of unknown function DUF; TIGRFAM: conserved hypothetical integral membrane protein TIGR00023
YP_003506564.1	PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; InterPro IPR001761:IPR000843; KEGG: bsu:BSU10840 LacI family transcription regulator; COGs: COG1609 Transcriptional regulators; SPTR: A4BA65 Galactose operon repressor; PFAM: Bacterial regulatory proteins, lacI family; Periplasmic binding proteins and sugar binding domain of the LacI family
YP_003506566.1	PFAM: Rieske [2Fe-2S] domain protein; SPTR: A4A0W4 Putative ferredoxin subunit of phenylpropionate dioxygenase; InterPro IPR005806; COGs: COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenase; KEGG: bte:BTH_II0490 Rieske family iron-sulfur cluster-binding protein; PFAM: Rieske [2Fe-2S] domain
YP_003506567.1	TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; InterPro IPR000825:IPR011542; KEGG: bcy:Bcer98_3578 FeS assembly protein SufD; COGs: COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component; SPTR: A4A0W3 Putative uncharacterized protein; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufD, group 1
YP_003506568.1	PFAM: plasmid stabilization system; InterPro IPR007712; KEGG: tgr:Tgr7_3300 addiction module antitoxin; SPTR: A0ZHX8 Plasmid stabilization system protein; PFAM: Plasmid stabilisation system protein
YP_003506570.1	TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; InterPro IPR000825:IPR010231; KEGG: bsu:BSU32670 hypothetical protein; COGs: COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component; SPTR: A6C5D2 Putative uncharacterized protein; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufB
YP_003506571.1	TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; InterPro IPR003439:IPR010230; KEGG: bcy:Bcer98_3579 FeS assembly ATPase SufC; COGs: COG0396 ABC-type transport system involved in Fe-S cluster assembly ATPase component; SPTR: A7IY62 ABC-type transport system ATPase component; PFAM: ABC transporter; TIGRFAM: FeS assembly ATPase SufC
YP_003506572.1	PFAM: protein of unknown function DUF178; SPTR: A4A1E0 Putative uncharacterized protein; InterPro IPR003773; COGs: COG1427 periplasmic solute-binding protein; KEGG: pca:Pcar_2125 hypothetical protein; PFAM: Uncharacterized ACR, COG1427
YP_003506573.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; InterPro IPR007197:IPR006638:IPR005244; KEGG: afw:Anae109_4206 radical SAM domain-containing protein; COGs: COG1060 Thiamine biosynthesis protein ThiH; SPTR: A6C965 Putative uncharacterized protein; PFAM: Radical SAM superfamily; TIGRFAM: radical SAM domain protein, CofH subfamily
YP_003506575.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; InterPro IPR001440:IPR011717:IPR013105:IPR013026; KEGG: sus:Acid_3133 TPR repeat-containing protein; COGs: COG4995 conserved hypothetical protein; SPTR: A0YJA5 Putative uncharacterized protein; PFAM: Tetratricopeptide repeat
YP_003506576.1	PFAM: extracellular solute-binding protein family 1; SPTR: A6AQJ2 Glycerol-3-phosphate-binding periplasmic protein; InterPro IPR006059; COGs: COG1653 ABC-type sugar transport system periplasmic component; KEGG: scl:sce9264 putative extracellular solute-binding protein; PFAM: Bacterial extracellular solute-binding protein
YP_003506577.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: A7CSY7 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; InterPro IPR013027:IPR001327; COGs: COG1252 NADH dehydrogenase FAD-containing subunit; KEGG: gsu:GSU0493 pyridine nucleotide-disulphide oxidoreductase family protein; PFAM: Pyridine nucleotide-disulphide oxidoreductase
YP_003506578.1	KEGG: bac:BamMC406_4814 putative transmembrane protein
YP_003506580.1	PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; SPTR: A2TJV0 Nattokinase (Fragment); InterPro IPR000209; COGs: COG1404 Subtilisin-like serine protease; KEGG: bsu:BSU10300 serine alkaline protease (subtilisin E); PFAM: IPT/TIG domain; Subtilase family
YP_003506581.1	KEGG: pfl:PFL_3520 outer membrane autotransporter; SPTR: Q8IFX6 Putative uncharacterized protein
YP_003506582.1	PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; InterPro IPR001440:IPR011717:IPR013105:IPR013026; KEGG: scl:sce1432 protein kinase; SPTR: Q0U710 Putative uncharacterized protein; PFAM: Tetratricopeptide repeat; Tetratricopeptide repeat
YP_003506583.1	TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; InterPro IPR000183:IPR002986; KEGG: gbm:Gbem_4055 diaminopimelate decarboxylase; COGs: COG0019 Diaminopimelate decarboxylase; SPTR: Q9RTK2 Diaminopimelate decarboxylase; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; TIGRFAM: diaminopimelate decarboxylase
YP_003506584.1	PFAM: peptidase C26; glutamine amidotransferase class-I; SPTR: A2U8Z5 Peptidase C26; InterPro IPR011702:IPR011697:IPR000991:IPR000169; COGs: COG2071 glutamine amidotransferase; KEGG: afr:AFE_2528 glutamine amidotransferase, class I; PFAM: Glutamine amidotransferase class-I
YP_003506585.1	KEGG: viscerotropic leishmaniasis antigen; SPTR: Q4QJH9 Viscerotropic leishmaniasis antigen, putative
YP_003506586.1	PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; InterPro IPR003439:IPR001140:IPR003593:IPR017940; KEGG: aba:Acid345_2371 ABC transporter, ATPase subunit; COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; SPTR: A4CM74 ABC transporter, ATP-binding protein, MsbA family protein; PFAM: ABC transporter; ABC transporter transmembrane region
YP_003506587.1	PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; InterProIPR003439:IPR001140:IPR003593:IPR017871:IPR 017940; KEGG: sus:Acid_3848 ABC transporter related; COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; SPTR: A3HY09 ABC transporter, ATP-binding protein, MDR family; PFAM: ABC transporter; ABC transporter transmembrane region
YP_003506590.1	PFAM: peptidase M20; peptidase dimerisation domain protein; SPTR: A4A7U8 Peptidase M20; InterPro IPR011650:IPR002933; COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; KEGG: aba:Acid345_1442 peptidase M20; PFAM: Peptidase family M20/M25/M40
YP_003506591.1	PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; InterPro IPR000792:IPR013249:IPR001789; KEGG: gur:Gura_0759 two component LuxR family transcriptional regulator; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; SPTR: A1HM78 Two component transcriptional regulator, LuxR family; PFAM: Bacterial regulatory proteins, luxR family; Response regulator receiver domain
YP_003506592.1	PFAM: small multidrug resistance protein; SPTR: A4BK11 Multidrug resistance protein; InterPro IPR000390; COGs: COG2076 Membrane transporter of cations and cationic drugs; KEGG: maq:Maqu_1061 small multidrug resistance protein; PFAM: Small Multidrug Resistance protein
YP_003506593.1	SPTR: A6B3F9 Membrane protein; COGs: COG3174 membrane protein; KEGG: ilo:IL1760 hypothetical protein
YP_003506594.1	PFAM: Di-trans-poly-cis-decaprenylcistransferase; SPTR: Q5SH15 Undecaprenyl pyrophosphate synthetase; KEGG: acr:Acry_2740 undecaprenyl diphosphate synthase; PRIAM: Di-trans,poly-cis-decaprenylcistransferase; InterPro IPR001441; TIGRFAM: undecaprenyl diphosphate synthase; COGs: COG0020 Undecaprenyl pyrophosphate synthase; PFAM: Putative undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase
YP_003506600.1	PRIAM: Phosphoribosylanthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); InterPro IPR001240; KEGG: acp:A2cp1_4199 phosphoribosylanthranilate isomerase; COGs: COG0135 Phosphoribosylanthranilate isomerase; SPTR: Q74AH7 N-(5'-phosphoribosyl)anthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate (PRA) isomerase
YP_003506601.1	PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; SPTR: A0YG93 Peptidase S8 and S53, subtilisin, kexin, sedolisin; InterPro IPR000209:IPR002048; COGs: COG1404 Subtilisin-like serine protease; KEGG: mxa:MXAN_0998 peptidase, S8A (subtilisin) subfamily; PFAM: Subtilase family
YP_003506602.1	TIGRFAM: iron-sulfur cluster binding protein; PFAM: protein of unknown function DUF162; InterPro IPR003741:IPR017900:IPR004452; KEGG: bat:BAS3036 iron-sulfur cluster-binding protein; COGs: COG1139 conserved hypothetical protein containing a ferredoxin-like domain; SPTR: A6F5P6 Iron-sulfur cluster binding protein; PFAM: Uncharacterised ACR, YkgG family COG1556; TIGRFAM: 2[4Fe-4S] protein, putative
YP_003506603.1	PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; SPTR: A3I782 YvfV; InterPro IPR004017; COGs: COG0247 Fe-S oxidoreductase; KEGG: bsu:BSU34050 hypothetical protein; PFAM: Cysteine-rich domain
YP_003506604.1	PFAM: protein of unknown function DUF74; SPTR: Q72J87 UPF0145 protein TT_C0892; InterPro IPR002765; COGs: COG0393 conserved hypothetical protein; KEGG: eca:ECA2666 hypothetical protein; PFAM: Domain of unknown function DUF74
YP_003506605.1	PFAM: protein of unknown function DUF418; protein of unknown function DUF405; SPTR: A2U633 Putative uncharacterized protein; InterPro IPR007349:IPR007299; COGs: COG2311 membrane protein; KEGG: xcv:XCV2905 hypothetical protein; PFAM: Protein of unknown function (DUF418); Protein of unknown function (DUF405)
YP_003506606.1	KEGG: sus:Acid_3670 hypothetical protein
YP_003506607.1	PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; InterPro IPR001845; KEGG: aba:Acid345_2532 transcriptional regulator, ArsR family; COGs: COG0640 transcriptional regulator protein; SPTR: A3TRP7 Putative transcriptional regulator; PFAM: Bacterial regulatory protein, arsR family
YP_003506608.1	KEGG: hypothetical protein; SPTR: A4CH31 Putative uncharacterized protein
YP_003506609.1	COGs: COG1246 N-acetylglutamate synthase and related acetyltransferase; InterPro IPR000182; KEGG: bam:Bamb_5597 GCN5-related N-acetyltransferase; SPTR: A7D5L3 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_003506610.1	PFAM: major facilitator superfamily MFS_1; InterPro IPR011701:IPR007114; KEGG: bpy:Bphyt_0211 major facilitator superfamily MFS_1; SPTR: A3RQX6 Permease; PFAM: Major Facilitator Superfamily
YP_003506611.1	PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; InterPro IPR017867; KEGG: sus:Acid_4408 protein tyrosine phosphatase; COGs: COG0394 Protein-tyrosine-phosphatase; SPTR: Q2FQC1 Protein tyrosine phosphatase; PFAM: Low molecular weight phosphotyrosine protein phosphatase
YP_003506612.1	PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; InterPro IPR017867; KEGG: sat:SYN_00054 phosphotyrosine protein phosphatase; COGs: COG0394 Protein-tyrosine-phosphatase; SPTR: A6C066 Phosphotyrosine protein phosphatase; PFAM: Low molecular weight phosphotyrosine protein phosphatase
YP_003506613.1	PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; InterPro IPR001440:IPR013105:IPR013026; KEGG: mfa:Mfla_1260 TPR repeat-containing protein; SPTR: Q469C8 TPR repeat; PFAM: Tetratricopeptide repeat; Tetratricopeptide repeat
YP_003506614.1	TIGRFAM: inosine-5'-monophosphate dehydrogenase; PRIAM: IMP dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein; InterPro IPR001093:IPR000644:IPR015875:IPR005990; SPTR: A1HTR8 Inosine-5'-monophosphate dehydrogenase; KEGG: bha:BH0020 inositol-5-monophosphate dehydrogenase; COGs: COG0516 IMP dehydrogenase/GMP reductase; SMART: CBS domain containing protein; PFAM: IMP dehydrogenase / GMP reductase domain; TIGRFAM: inosine-5'-monophosphate dehydrogenase
YP_003506615.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; SPTR: O29271 Glutaryl-CoA dehydrogenase (GcdH); InterProIPR006090:IPR006092:IPR006091:IPR013107:IPR 006089; COGs: COG1960 Acyl-CoA dehydrogenase; KEGG: gme:Gmet_2075 acyl-CoA dehydrogenase-like; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, N-terminal domain; Acyl-CoA dehydrogenase, middle domain
YP_003506616.1	PRIAM: Site-specific DNA-methyltransferase (adenine-specific); PFAM: D12 class N6 adenine-specific DNA methyltransferase; InterPro IPR002294:IPR012327; KEGG: abb:ABBFA_003309 modification methylase NlaIII; COGs: COG3392 Adenine-specific DNA methylase; SPTR: A0MQ38 DNA-methyltransferase (Fragment); PFAM: D12 class N6 adenine-specific DNA methyltransferase
YP_003506617.1	KEGG: dol:Dole_0153 hypothetical protein; SPTR: A6NRQ1 Putative uncharacterized protein
YP_003506618.1	PFAM: CBS domain containing protein; amino acid-binding ACT domain protein; SMART: CBS domain containing protein; InterPro IPR002912:IPR000644; KEGG: bha:BH3236 acetoin dehydrogenase; COGs: COG0517 FOG: CBS domain; SPTR: A2U6V3 CBS domain containing membrane protein; PFAM: CBS domain pair; ACT domain
YP_003506619.1	PFAM: histone deacetylase superfamily; SPTR: A6CL91 Acetoin utilization protein; InterPro IPR003085:IPR000286; COGs: COG0123 Deacetylase including yeast histone deacetylase and acetoin utilization protein; KEGG: bcy:Bcer98_3338 histone deacetylase superfamily protein; PFAM: Histone deacetylase domain
YP_003506620.1	PFAM: protein of unknown function DUF1653; SPTR: A3ZR30 Putative uncharacterized protein; InterPro IPR012868; COGs: COG4728 conserved hypothetical protein; KEGG: pen:PSEEN3726 hypothetical protein; PFAM: Protein of unknown function (DUF1653)
YP_003506621.1	InterPro IPR003544:IPR013525; PFAM: cytochrome c-type biogenesis protein CcmB; ABC-2 type transporter; COGs: COG2386 ABC-type transport system involved in cytochrome c biogenesis permease component; KEGG: mgm:Mmc1_3499 cytochrome c-type biogenesis protein CcmB; SPTR: Q12XA4 ABC heme exporter, inner membrane subunit B; PFAM: ABC-2 type transporter; TIGRFAM: heme exporter protein CcmB
YP_003506622.1	PFAM: cytochrome c assembly protein; SPTR: A3VRG7 Heme exporter protein C (ABC transporter permease component); InterPro IPR003557:IPR002541; COGs: COG0755 ABC-type transport system involved in cytochrome c biogenesis permease component; KEGG: mxa:MXAN_3256 heme exporter protein CcmC; PFAM: Cytochrome C assembly protein
YP_003506624.1	PFAM: CcmE/CycJ protein; SPTR: Q72IU3 Cytochrome c-type biogenesis protein ccmE; InterPro IPR004329; COGs: COG2332 Cytochrome c-type biogenesis protein CcmE; KEGG: mxa:MXAN_3254 cytochrome c-type biogenesis protein CcmE; PFAM: CcmE
YP_003506625.1	PFAM: cytochrome c assembly protein; SPTR: Q9I3N2 Cytochrome c-type biogenesis protein ccmF; InterPro IPR003567:IPR002541; COGs: COG1138 Cytochrome c biogenesis factor; KEGG: mxa:MXAN_3253 cytochrome c-type biogenesis protein CcmF; PFAM: Cytochrome C assembly protein; TIGRFAM: c-type cytochrome biogenesis protein CcmF
YP_003506626.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; SPTR: P30960 Thiol:disulfide interchange protein cycY; InterPro IPR006662:IPR000866:IPR013740; COGs: COG0526 Thiol-disulfide isomerase and thioredoxins; KEGG: lch:Lcho_1550 periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: AhpC/TSA family; TIGRFAM: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
YP_003506627.1	PFAM: cytochrome C biogenesis protein; SPTR: A4U433 Cytochrome C biogenesis protein; InterPro IPR005616; COGs: COG3088 Uncharacterized protein involved in biosynthesis of c-type cytochromes; KEGG: eba:ebA3525 cytochrome c biogenesis protein; PFAM: Cytochrome C biogenesis protein
YP_003506628.1	PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; InterPro IPR001440:IPR013026:IPR009056; KEGG: hypothetical protein; SPTR: A9U7R8 Predicted protein (Fragment); PFAM: Cytochrome c; Tetratricopeptide repeat
YP_003506629.1	PFAM: Rieske [2Fe-2S] domain protein; SPTR: Q703H9 Rieske iron-sulphur protein; InterPro IPR005805:IPR005806; COGs: COG0723 Rieske Fe-S protein; KEGG: rfr:Rfer_3085 twin-arginine translocation pathway signal; PFAM: Rieske [2Fe-2S] domain
YP_003506630.1	TIGRFAM: tyrosyl-tRNA synthetase; PRIAM: Tyrosine--tRNA ligase; PFAM: aminoacyl-tRNA synthetase class Ib; InterPro IPR002307:IPR002305:IPR002942; KEGG: bha:BH3228 tyrosyl-tRNA synthetase; COGs: COG0162 Tyrosyl-tRNA synthetase; SPTR: Q5SIH0 Tyrosyl-tRNA synthetase; PFAM: tRNA synthetases class I (W and Y); TIGRFAM: tyrosyl-tRNA synthetase
YP_003506632.1	TIGRFAM: ribosomal protein S20; PFAM: ribosomal protein S20; InterPro IPR002583; KEGG: dol:Dole_2436 ribosomal protein S20; SPTR: P62661 30S ribosomal protein S20; PFAM: Ribosomal protein S20; TIGRFAM: ribosomal protein S20
YP_003506633.1	PFAM: CHAD domain containing protein; InterPro IPR007899; KEGG: mfa:Mfla_2069 adenylate cyclase; SPTR: A0ACU6 Conserved hypothetical secreted protein; PFAM: CHAD domain
YP_003506634.1	PFAM: protein of unknown function DUF177; SPTR: A7VPH8 Putative uncharacterized protein; InterPro IPR003772; COGs: COG1399 metal-binding possibly nucleic acid-binding protein; KEGG: gbm:Gbem_3111 protein of unknown function DUF177; PFAM: Uncharacterized ACR, COG1399
YP_003506635.1	TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; InterPro IPR005924:IPR006035:IPR014033; KEGG: arginase; COGs: COG0010 Arginase/agmatinase/formimionoglutamate hydrolase arginase family; SPTR: P53608 Arginase; PFAM: Arginase family; TIGRFAM: arginase
YP_003506636.1	TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PRIAM:1-(5-phosphoribosyl)-5-((5-phosphoribosylamin o)methylideneamino)imidazole-4-carboxamideisomerase; PFAM: histidine biosynthesis protein; InterPro IPR006062:IPR006063; KEGG: glo:Glov_1019 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; COGs: COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase; SPTR: Q5SJ49 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; PFAM: Histidine biosynthesis protein; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; hisA/hisF family protein
YP_003506637.1	PRIAM: Sulfite reductase (NADPH); PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; InterPro IPR006066:IPR006067:IPR005117; KEGG: gbe:GbCGDNIH1_0909 sulfite reductase (ferredoxin); COGs: COG0155 Sulfite reductase beta subunit (hemoprotein); SPTR: A4A278 Sulfite reductase; PFAM: Nitrite/Sulfite reductase ferredoxin-like half domain; Nitrite and sulphite reductase 4Fe-4S domain; TIGRFAM: ferredoxin-sulfite reductase
YP_003506638.1	TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; InterPro IPR000878:IPR003043:IPR006366; KEGG: sus:Acid_0181 uroporphyrinogen-III C-methyltransferase; COGs: COG0007 Uroporphyrinogen-III methylase; SPTR: A5AFZ4 Putative uncharacterized protein; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: uroporphyrin-III C-methyltransferase
YP_003506639.1	TIGRFAM: siroheme synthase; PRIAM: Precorrin-2 dehydrogenase; InterPro IPR000684:IPR006367; KEGG: gbm:Gbem_0405 siroheme synthase; COGs: COG1648 Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain); SPTR: A7UFC8 Siroheme synthase; PFAM: Sirohaem synthase dimerisation region; TIGRFAM: siroheme synthase, N-terminal domain
YP_003506640.1	PFAM: protein of unknown function DUF81; InterPro IPR002781; KEGG: mpt:Mpe_A1504 hypothetical protein; SPTR: A2WC97 Putative uncharacterized protein; PFAM: Domain of unknown function DUF81
YP_003506641.1	COGs: COG2046 ATP sulfurylase (sulfate adenylyltransferase); InterPro IPR002650; TIGRFAM: sulfate adenylyltransferase; PRIAM: Sulfate adenylyltransferase; PFAM: ATP-sulfurylase; SPTR: A9WFJ2 Sulfate adenylyltransferase; KEGG: bsu:BSU15590 sulfate adenylyltransferase; PFAM: ATP-sulfurylase; TIGRFAM: ATP sulphurylase
YP_003506642.1	PFAM: phosphoadenosine phosphosulfate reductase; SPTR: P56860 Phosphoadenosine phosphosulfate reductase; InterPro IPR002500; COGs: COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase; KEGG: mlo:mll3228 phosphoadenosine phosphosulfate reductase; PFAM: Phosphoadenosine phosphosulfate reductase family; TIGRFAM: phosophoadenylyl-sulfate reductase (thioredoxin)
YP_003506643.1	TIGRFAM: adenylylsulfate kinase; PRIAM: Adenylyl-sulfate kinase; PFAM: adenylylsulfate kinase; InterPro IPR002891; KEGG: sus:Acid_7933 adenylylsulfate kinase / phosphoadenylylsulfate reductase (thioredoxin); COGs: COG0529 Adenylylsulfate kinase and related kinase; SPTR: Q1IYI1 Adenylyl-sulfate kinase; PFAM: Adenylylsulphate kinase; TIGRFAM: adenylylsulfate kinase (apsK)
YP_003506645.1	TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; InterPro IPR003156:IPR001667:IPR004610; KEGG: afw:Anae109_1327 single-stranded-DNA-specific exonuclease RecJ; COGs: COG0608 Single-stranded DNA-specific exonuclease; SPTR: A1HMM2 Single-stranded-DNA-specific exonuclease RecJ; PFAM: DHHA1 domain; DHH family; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ
YP_003506646.1	SPTR: A6G7U6 Putative uncharacterized protein; COGs: COG4339 conserved hypothetical protein; KEGG: ank:AnaeK_1089 hypothetical protein
YP_003506648.1	PFAM: transposase IS4 family protein; InterPro IPR002559; KEGG: tdn:Suden_1713 transposase IS4; SPTR: A1ZSG8 Transposase, IS4; PFAM: Transposase DDE domain
YP_003506649.1	TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; InterPro IPR005133; KEGG: rce:RC1_3670 Na(+)/H(+) antiporter subunit G; COGs: COG1320 Multisubunit Na+/H+ antiporter MnhG subunit; SPTR: A6EIE1 Monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit
YP_003506650.1	PFAM: multiple resistance and pH regulation protein F; InterPro IPR007208; KEGG: tgr:Tgr7_2523 multiple resistance and pH regulation protein F; SPTR: A4EMF7 Multiple resistance and pH regulation protein F; PFAM: Multiple resistance and pH regulation protein F (MrpF / PhaF)
YP_003506651.1	PFAM: cation antiporter; SPTR: A4EMF6 Cation antiporter; InterPro IPR002758; COGs: COG1863 Multisubunit Na+/H+ antiporter MnhE subunit; KEGG: rce:RC1_3668 Na(+)/H(+) antiporter subunit E; PFAM: Na+/H+ ion antiporter subunit
YP_003506652.1	PFAM: NADH/Ubiquinone/plastoquinone (complex I); SPTR: A4EMF5 NADH dehydrogenase (Quinone); InterPro IPR003918:IPR003916:IPR001750; COGs: COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter MnhD subunit; KEGG: jan:Jann_3692 NADH dehydrogenase (quinone); PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains
YP_003506653.1	PFAM: NADH-ubiquinone oxidoreductase chain 4L; SPTR: A4EMF4 NADH-ubiquinone oxidoreductase, chain 4L; InterPro IPR001133; COGs: COG1006 Multisubunit Na+/H+ antiporter MnhC subunit; KEGG: rce:RC1_3666 Na(+)/H(+) antiporter subunit C; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
YP_003506654.1	PFAM: Na+/H+ antiporter MnhB subunit-related protein; InterPro IPR007182; KEGG: aeh:Mlg_2091 putative monovalent cation/H+ antiporter subunit B; SPTR: A3JFH8 Na+/H+ antiporter MnhB subunit-related protein; PFAM: Domain related to MnhB subunit of Na+/H+ antiporter
YP_003506655.1	PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; SPTR: A3JFH9 NADH-ubiquinone/plastoquinone family protein; InterPro IPR003918:IPR003916:IPR001750:IPR001516; COGs: COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter MnhA subunit; KEGG: rce:RC1_3664 Na(+)/H(+) antiporter subunit A; PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; NADH-Ubiquinone/plastoquinone (complex I), various chains
YP_003506656.1	COGs: COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; InterPro IPR004839; KEGG: bpl:BURPS1106A_1163 aminotransferase, class I/II; SPTR: A8KU78 Aminotransferase, class I/II; PFAM: aminotransferase class I and II; PFAM: Aminotransferase class I and II
YP_003506657.1	TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; InterPro IPR006674:IPR003607:IPR006261; KEGG: gsu:GSU1246 deoxyguanosinetriphosphate triphosphohydrolase-like protein; COGs: COG0232 dGTP triphosphohydrolase; SPTR: Q74DR9 Deoxyguanosinetriphosphate triphosphohydrolase-like protein; PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG; deoxyguanosinetriphosphate triphosphohydrolase, putative
YP_003506658.1	SPTR: A5UJN9 Putative uncharacterized protein
YP_003506659.1	KEGG: aba:Acid345_1066 hypothetical protein; SPTR: A4LF01 Secreted protein
YP_003506660.1	PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; peptidase domain protein; SPTR: Q9RYM8 Probable subtilase-type serine protease DR_A0283; InterPro IPR000209:IPR007280; COGs: COG1404 Subtilisin-like serine protease; KEGG: tbd:Tbd_0507 serine protease; PFAM: Bacterial pre-peptidase C-terminal domain; Subtilase family
YP_003506661.1	PFAM: putative esterase; SPTR: A7JU47 Putative uncharacterized protein; InterPro IPR000801; COGs: COG4947 conserved hypothetical protein; KEGG: apl:APL_1882 hypothetical protein; PFAM: Putative esterase
YP_003506662.1	PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; SPTR: A7JU48 Putative uncharacterized protein; InterPro IPR003135:IPR011761; COGs: COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ); KEGG: sfu:Sfum_2328 hypothetical protein; PFAM: ATP-grasp domain
YP_003506663.1	TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; InterProIPR002942:IPR006145:IPR006224:IPR010916:IPR 006225; KEGG: sus:Acid_7265 ribosomal large subunit pseudouridine synthase D; COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; SPTR: Q45826 Uncharacterized RNA pseudouridine synthase Caur_0901; PFAM: S4 domain; RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase, RluA family
YP_003506665.1	TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; Metal-dependent hydrolase HDOD; histidine kinase HAMP region domain protein; SMART: metal-dependent phosphohydrolase HD region; histidine kinase HAMP region domain protein; InterProIPR006674:IPR013976:IPR003660:IPR003607:IPR 006675; KEGG: afw:Anae109_1158 metal dependent phosphohydrolase; COGs: COG2206 HD-GYP domain; SPTR: A1HRL7 Metal dependent phosphohydrolase; PFAM: HD domain; HAMP domain; TIGRFAM: uncharacterized domain HDIG
YP_003506666.1	TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: AAA ATPase central domain protein; Holliday junction DNA helicase RuvB domain; Chromosomal replication initiator DnaA; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; InterProIPR008824:IPR008823:IPR013317:IPR003959:IPR 011704:IPR003593:IPR004605; KEGG: Holliday junction DNA helicase RuvB ; K03551 holliday junction DNA helicase RuvB; COGs: COG2255 Holliday junction resolvasome helicase subunit; SPTR: Q5SL87 Holliday junction ATP-dependent DNA helicase ruvB; PFAM: Holliday junction DNA helicase ruvB C-terminus; ATPase family associated with various cellular activities (AAA); Holliday junction DNA helicase ruvB N-terminus; TIGRFAM: Holliday junction DNA helicase, RuvB subunit
YP_003506667.1	PFAM: response regulator receiver; InterPro IPR001789; KEGG: dal:Dalk_0743 hypothetical protein; PFAM: Response regulator receiver domain
YP_003506668.1	SPTR: A8DJX8 Putative uncharacterized protein; COGs: COG4365 conserved hypothetical protein; KEGG: bce:BC3919 hypothetical protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2317)
YP_003506669.1	PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; InterPro IPR001808:IPR000595:IPR012318; KEGG: bbt:BBta_5745 transcriptional regulator; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; SPTR: A3ZXR8 Transcriptional regulator; PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain
YP_003506670.1	InterPro IPR003794; PFAM: protein of unknown function DUF191; COGs: COG2107 periplasmic solute-binding protein; KEGG: glo:Glov_0657 protein of unknown function DUF191; SPTR: A6GG31 Putative uncharacterized protein; PFAM: Uncharacterized ACR, COG2107
YP_003506671.1	PFAM: protein of unknown function DUF990; SPTR: A0YU65 Putative uncharacterized protein; InterPro IPR010390; COGs: COG3694 ABC-type uncharacterized transport system permease component; KEGG: ade:Adeh_0400 hypothetical protein; PFAM: Protein of unknown function (DUF990)
YP_003506672.1	TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Torsin; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: AAA ATPase; InterProIPR001270:IPR010448:IPR003959:IPR013093:IPR 011704:IPR004176:IPR003593:IPR017730; KEGG: sus:Acid_0505 ATPase; COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; SPTR: Q7X2S8 Chaperone protein clpB; PFAM: ATPase family associated with various cellular activities (AAA); C-terminal, D2-small domain, of ClpB protein; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent chaperone ClpB
YP_003506673.1	TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; InterPro IPR006662:IPR013766:IPR017937:IPR005746; KEGG: dal:Dalk_0228 thioredoxin; COGs: COG3118 Thioredoxin domain-containing protein; SPTR: P0A4L1 Thioredoxin-1; PFAM: Thioredoxin; TIGRFAM: thioredoxin
YP_003506675.1	KEGG: azo:azo0287 hypothetical protein; SPTR: B1YAV5 PilT protein domain protein; PFAM: PIN domain
YP_003506676.1	PFAM: heat shock protein Hsp20; SPTR: A7CFV9 Heat shock protein Hsp20; InterPro IPR002068; COGs: COG0071 Molecular chaperone (small heat shock protein); KEGG: aba:Acid345_4766 heat shock protein HSP20; PFAM: Hsp20/alpha crystallin family
YP_003506677.1	PFAM: Rhomboid family protein; SPTR: A3XBM0 Rhomboid family protein; InterPro IPR002610; COGs: COG0705 membrane protein; KEGG: rru:Rru_A3565 rhomboid-like protein; PFAM: Rhomboid family
YP_003506678.1	PFAM: DNA polymerase beta domain protein region; InterPro IPR002934; KEGG: bcz:pE33L466_0269 nucleotidyltransferase; SPTR: A4BMB6 Putative uncharacterized protein; PFAM: Nucleotidyltransferase domain
YP_003506679.1	PFAM: protein of unknown function DUF86; SPTR: A3I7R9 Putative uncharacterized protein; InterPro IPR008201; COGs: COG2445 conserved hypothetical protein; KEGG: ppd:Ppro_2947 hypothetical protein; PFAM: Protein of unknown function DUF86
YP_003506680.1	PFAM: O-antigen polymerase; InterPro IPR007016; KEGG: asu:Asuc_0537 O-antigen polymerase; SPTR: A2W7Q5 Lipid A core-O-antigen ligase; PFAM: O-Antigen Polymerase
YP_003506681.1	KEGG: vco:VC0395_A2811 hypothetical protein
YP_003506682.1	SPTR: A0ZDI4 General secretion pathway protein H; InterPro IPR002416:IPR012902:IPR001120; KEGG: sat:SYN_00814 tfp pilus assembly protein, major pilin; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain
YP_003506683.1	SPTR: A6DQV4 Putative uncharacterized protein; InterPro IPR012902:IPR001120; KEGG: sat:SYN_00814 tfp pilus assembly protein, major pilin; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain
YP_003506684.1	PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; InterPro IPR001440:IPR013105:IPR013026; KEGG: dol:Dole_2414 TPR repeat-containing protein; SPTR: B6KYA6 Putative uncharacterized protein; PFAM: Tetratricopeptide repeat; Tetratricopeptide repeat
YP_003506686.1	PFAM: Cupin 2 conserved barrel domain protein; InterPro IPR013096; KEGG: rpd:RPD_2234 cupin 2, barrel; SPTR: A4BMZ5 Putative uncharacterized protein; PFAM: Cupin domain
YP_003506687.1	COGs: COG1850 Ribulose 1 5-bisphosphate carboxylase large subunit; InterPro IPR000685; KEGG: rpe:RPE_3678 rubisco-like protein Rlp1; PFAM: ribulose bisphosphate carboxylase large chain; SPTR: Q6N7T7 Ribulose bisphosphate carboxylase-like protein 1; PRIAM: Ribulose-bisphosphate carboxylase; PFAM: Ribulose bisphosphate carboxylase large chain, catalytic domain
YP_003506689.1	PFAM: regulatory protein TetR; InterPro IPR001647; KEGG: ppw:PputW619_0458 TetR family transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family
YP_003506690.1	PFAM: response regulator receiver; SMART: response regulator receiver; InterPro IPR001789; KEGG: mxa:MXAN_4461 response regulator; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; SPTR: A0YY42 Sensor histidine kinase; PFAM: Response regulator receiver domain
YP_003506691.1	SPTR: A6GDM2 Response regulator receiver domain protein (CheY-like); InterPro IPR001789; KEGG: afw:Anae109_0615 response regulator receiver protein
YP_003506692.1	PFAM: response regulator receiver; CheW domain protein; Hpt domain protein; Signal transducing histidine kinase homodimeric; ATP-binding region ATPase domain protein; SMART: response regulator receiver; Hpt domain protein; CheW domain protein; ATP-binding region ATPase domain protein; InterProIPR004358:IPR008207:IPR004105:IPR002545:IPR 001789:IPR003594:IPR005467; KEGG: xcb:XC_1187 PilL protein; COGs: COG0643 Chemotaxis protein histidine kinase and related kinase; SPTR: A6F1T3 Chemotaxis protein histidine kinase and related kinase; PFAM: Hpt domain; CheW-like domain; Response regulator receiver domain; Signal transducing histidine kinase, homodimeric domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_003506693.1	PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SPTR: A0YZI7 Chemotaxis sensory transducer; KEGG: tgr:Tgr7_0580 putative methyl-accepting chemotaxis sensory transducer; COGs: COG0840 Methyl-accepting chemotaxis protein; InterPro IPR004089:IPR003660; PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signaling domain
YP_003506694.1	PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; InterPro IPR004089:IPR003660; KEGG: rso:RSc0671 putative twitching motility transmembrane protein; COGs: COG0840 Methyl-accepting chemotaxis protein; SPTR: A0ZA33 Methyl-accepting chemotaxis protein; PFAM: Methyl-accepting chemotaxis protein (MCP) signaling domain; HAMP domain
YP_003506695.1	PFAM: MHYT domain protein; SPTR: A3ES31 Putative signal transduction protein; InterPro IPR005330; COGs: COG3300 MHYT domain (predicted integral membrane sensor domain); KEGG: sdn:Sden_3722 ATP-binding region, ATPase-like protein; PFAM: Bacterial signalling protein N terminal repeat
YP_003506696.1	PFAM: CheW domain protein; SMART: CheW domain protein; InterPro IPR002545; KEGG: gme:Gmet_2708 CheW protein; COGs: COG0835 Chemotaxis signal transduction protein; SPTR: A3UFA5 Probable purine-binding chemotaxis protein; PFAM: CheW-like domain
YP_003506697.1	PFAM: response regulator receiver; SMART: response regulator receiver; InterPro IPR001789; KEGG: pmy:Pmen_0404 response regulator receiver protein; COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; SPTR: A8CV07 Response regulator receiver protein; PFAM: Response regulator receiver domain
YP_003506698.1	PFAM: UspA domain protein; SPTR: P74897 Uncharacterized protein in QAH/OAS sulfhydrylase 3'region; InterPro IPR006015:IPR006016; COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; KEGG: dvu:DVU0893 universal stress protein; PFAM: Universal stress protein family
YP_003506699.1	PFAM: Dynamin family protein; Miro domain protein; GTP-binding protein HSR1-related; SPTR: Q00ZF0 Mitofusin 1 GTPase, involved in mitochondrila biogenesis (ISS); InterPro IPR001401:IPR013684:IPR002917; COGs: COG1159 GTPase; KEGG: hypothetical protein; PFAM: GTPase of unknown function; TIGRFAM: small GTP-binding protein domain
YP_003506700.1	KEGG: pag:PLES_54501 polyhydroxyalkanoate synthesis protein PhaF; SPTR: A3L2J4 Polyhydroxyalkanoate synthesis protein PhaF
YP_003506701.1	TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; RimK domain protein ATP-grasp; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; InterProIPR005483:IPR005479:IPR013651:IPR005480:IPR 005481:IPR011761:IPR006275; KEGG: carbamoyl-phosphate synthase, large subunit ; K01955 carbamoyl-phosphate synthase large subunit; COGs: COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ); SPTR: Q5SKN1 Carbamoyl-phosphate synthase large chain; PFAM: ATP-grasp domain; Carbamoyl-phosphate synthetase large chain, oligomerisation domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; Carbamoyl-phosphate synthase L chain, ATP binding domain; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type; carbamoyl-phosphate synthase, large subunit
YP_003506702.1	PFAM: Ferritin Dps family protein; SPTR: A3TGI3 Putative ferritin family protein; InterPro IPR008331:IPR009040; COGs: COG1528 Ferritin-like protein; KEGG: bha:BH1124 ferritin; PFAM: Ferritin-like domain
YP_003506703.1	PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; InterPro IPR001763; KEGG: aha:AHA_0294 rhodanese domain-containing protein; COGs: COG0607 Rhodanese-related sulfurtransferase; SPTR: A6BDB1 Putative uncharacterized protein; PFAM: Rhodanese-like domain
YP_003506704.1	KEGG: sfu:Sfum_3892 hypothetical protein; SPTR: Q8TNJ8 Predicted protein
YP_003506705.1	PRIAM: Thiosulfate sulfurtransferase; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; InterPro IPR001763:IPR001307; KEGG: oca:OCAR_4549 hypothetical protein; COGs: COG2897 Rhodanese-related sulfurtransferase; SPTR: Q9RXT9 Thiosulfate sulfurtransferase; PFAM: Rhodanese-like domain
YP_003506706.1	KEGG: bha:BH3125 hypothetical protein; COGs: COG1959 transcriptional regulator protein; SPTR: A3HVR2 Transcriptional regulator, BadM/Rrf2 family protein; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; InterPro IPR000944; PFAM: Transcriptional regulator; TIGRFAM: rrf2 family protein (putative transcriptional regulator)
YP_003506707.1	SPTR: A3I198 Putative uncharacterized protein; InterPro IPR003010; KEGG: mxa:MXAN_1465 hypothetical protein
YP_003506709.1	TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; InterPro IPR003370:IPR014047; KEGG: mxa:MXAN_6347 putative chromate transporter; COGs: COG2059 Chromate transport protein ChrA; SPTR: A4APT3 Chromate transporter; PFAM: Chromate transporter; TIGRFAM: chromate transporter, chromate ion transporter (CHR) family
YP_003506710.1	PFAM: extracellular solute-binding protein family 5; SPTR: B1L5E6 ABC-type dipeptide transport system, periplasmic component; InterPro IPR000914; COGs: COG0747 ABC-type dipeptide transport system periplasmic component; KEGG: smd:Smed_2326 extracellular solute-binding protein family 5; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle
YP_003506711.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: B1L5E7 ABC-type dipeptide/oligopeptide/nickel transport system, permease component; InterPro IPR000515; COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; KEGG: pfl:PFL_4025 binding-protein-dependent transporter inner membrane protein; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003506712.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A5TTM7 Dipeptide/oligopeptide/nickel (Ni2+) ABC superfamily ATP binding cassette transporter membrane protein DppC; InterPro IPR000515; COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; KEGG: sit:TM1040_2716 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003506713.1	PFAM: GCN5-related N-acetyltransferase; InterPro IPR000182; KEGG: hypothetical protein; SPTR: A4IV42 Putative uncharacterized protein; PFAM: Acetyltransferase (GNAT) family
YP_003506715.1	TIGRFAM: methylmalonyl-CoA mutase, large subunit; PRIAM: Methylmalonyl-CoA mutase; PFAM: methylmalonyl-CoA mutase; InterPro IPR006099:IPR006098; KEGG: afw:Anae109_0281 methylmalonyl-CoA mutase, large subunit; COGs: COG1884 Methylmalonyl-CoA mutase N-terminal domain/subunit; SPTR: O74009 563aa long hypothetical methylmalonyl-CoA mutase; PFAM: Methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain
YP_003506717.1	TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid ac-diamide synthase; InterPro IPR002586:IPR010223; KEGG: bha:BH3027 septum site-determining protein; COGs: COG2894 Septum formation inhibitor-activating ATPase; SPTR: A1HNZ9 Septum site-determining protein MinD; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: septum site-determining protein MinD
YP_003506718.1	TIGRFAM: cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE; InterPro IPR005527; KEGG: afr:AFE_0011 cell division topological specificity factor MinE; COGs: COG0851 Septum formation topological specificity factor; SPTR: Q9RWB8 Cell division topological specificity factor; PFAM: Septum formation topological specificity factor MinE; TIGRFAM: cell division topological specificity factor MinE
YP_003506719.1	SPTR: A3L6H5 Putative uncharacterized protein; COGs: COG1354 conserved hypothetical protein; KEGG: pag:PLES_18691 hypothetical protein; PFAM: ScpA/B protein
YP_003506720.1	TIGRFAM: tryptophanyl-tRNA synthetase; PRIAM: Tryptophan--tRNA ligase; PFAM: aminoacyl-tRNA synthetase class Ib; InterPro IPR002306:IPR002305:IPR001412; KEGG: aba:Acid345_3860 tryptophanyl-tRNA synthetase; COGs: COG0180 Tryptophanyl-tRNA synthetase; SPTR: Q9RWV7 Tryptophanyl-tRNA synthetase; PFAM: tRNA synthetases class I (W and Y); TIGRFAM: tryptophanyl-tRNA synthetase
YP_003506721.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR013249:IPR007627:IPR007630:IPR014284; KEGG: bur:Bcep18194_C6588 sigma-24 (FecI-like); PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; SPTR: A3TPI8 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_003506722.1	KEGG: acr:Acry_1332 hypothetical protein; SPTR: A1TEV1 Anti-sigma-K factor rskA
YP_003506723.1	SPTR: B2VTL2 Putative uncharacterized protein; InterPro IPR006311; KEGG: rfr:Rfer_4137 hypothetical protein
YP_003506724.1	PFAM: CHRD domain containing protein; InterPro IPR010895; KEGG: mrd:Mrad2831_0444 CHRD domain-containing protein; SMART: CHRD domain containing protein; PFAM: CHRD domain
YP_003506725.1	SPTR: A8HQR8 Predicted protein; InterPro IPR006311; KEGG: dac:Daci_5785 hypothetical protein
YP_003506726.1	TIGRFAM: 1-aminocyclopropane-1-carboxylate deaminase; PRIAM: 1-aminocyclopropane-1-carboxylate deaminase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; InterPro IPR001926:IPR005965; KEGG: bcm:Bcenmc03_4142 1-aminocyclopropane-1-carboxylate deaminase; COGs: COG2515 1-aminocyclopropane-1-carboxylate deaminase; SPTR: A0AXI7 1-aminocyclopropane-1-carboxylate deaminase; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: 1-aminocyclopropane-1-carboxylate deaminase; pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family
YP_003506727.1	PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; InterPro IPR000524:IPR011711:IPR000276; KEGG: bcm:Bcenmc03_4029 GntR family transcriptional regulator; COGs: COG1802 Transcriptional regulators; SPTR: A0NZV8 Transcriptional regulator; PFAM: Bacterial regulatory proteins, gntR family; FCD domain
YP_003506728.1	PFAM: GCN5-related N-acetyltransferase; InterPro IPR000182; KEGG: acetyltransferase ; K03829 putative acetyltransferase; SPTR: Q0W0R3 Putative acetyltransferase (GNAT family); PFAM: Acetyltransferase (GNAT) family
YP_003506729.1	PRIAM: Phosphoglycerate kinase; PFAM: phosphoglycerate kinase; InterPro IPR001576:IPR015911; KEGG: pzu:PHZ_p0042 phosphoglycerate kinase; COGs: COG0126 3-phosphoglycerate kinase; SPTR: P62420 Phosphoglycerate kinase; PFAM: Phosphoglycerate kinase
YP_003506730.1	TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PRIAM: Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); PFAM: glyceraldehyde 3-phosphate dehydrogenase; InterPro IPR000173:IPR006424; KEGG: bha:BH3560 glyceraldehyde-3-phosphate dehydrogenase; COGs: COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; SPTR: P00361 Glyceraldehyde-3-phosphate dehydrogenase; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I
YP_003506731.1	PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV; SPTR: A0YIA8 Type 4 prepilin peptidase; InterPro IPR010627:IPR000045; COGs: COG1989 Type II secretory pathway prepilin signal peptidase PulO and related peptidase; KEGG: mfa:Mfla_2225 Type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A; PFAM: Bacterial Peptidase A24 N-terminal domain; Type IV leader peptidase family
YP_003506732.1	PFAM: protein of unknown function DUF152; SPTR: Q9RT03 UPF0124 protein DR_1966; InterPro IPR003730; COGs: COG1496 conserved hypothetical protein; KEGG: mmr:Mmar10_2304 hypothetical protein; PFAM: Multi-copper polyphenol oxidoreductase laccase; TIGRFAM: conserved hypothetical protein TIGR00726
YP_003506733.1	TIGRFAM: HAD superfamily (subfamily IIIA) phosphatase, TIGR01668; hydrolase, HAD-superfamily, subfamily IIIA; SPTR: A3IF97 Putative uncharacterized protein; InterPro IPR010021:IPR006549; COGs: COG2179 hydrolase of the HAD superfamily; KEGG: bcr:BCAH187_A4469 hydrolase, HAD subfamily IIIA; PFAM: Protein of unknown function; TIGRFAM: HAD superfamily (subfamily IIIA) phosphatase, TIGR01668; HAD-superfamily hydrolase, subfamily IIIA
YP_003506734.1	PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SPTR: A1HQ24 General secretory pathway protein E; InterPro IPR001482:IPR007831; COGs: COG2804 Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; KEGG: aav:Aave_4160 general secretory pathway protein E; PFAM: GSPII_E N-terminal domain; Type II/IV secretion system protein
YP_003506735.1	PFAM: peptidase M20; peptidase dimerisation domain protein; SPTR: A3I827 Putative uncharacterized protein; InterPro IPR011650:IPR002933; COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; KEGG: bha:BH3875 hypothetical protein; PFAM: Peptidase family M20/M25/M40
YP_003506736.1	PFAM: PEGA domain protein; InterPro IPR013229; KEGG: scl:sce9157 tonb-dependent receptor signal peptide protein; SPTR: B7R0L3 Serine/threonine-protein kinase; PFAM: PEGA domain
YP_003506737.1	PRIAM: Catalase; PFAM: manganese containing catalase; InterPro IPR007760; KEGG: bha:BH1069 Mn catalase; COGs: COG3546 Mn-containing catalase; SPTR: A8CFD3 Manganese catalase; PFAM: Manganese containing catalase
YP_003506738.1	PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: A3HUM1 Redox-sensitive transcriptional activator; InterPro IPR000847:IPR005119; COGs: COG0583 Transcriptional regulator; KEGG: tbd:Tbd_2323 oxidative stress transcriptional regulator; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family
YP_003506739.1	SPTR: A1HTJ8 Putative uncharacterized protein; COGs: COG1092 SAM-dependent methyltransferase; KEGG: sus:Acid_2335 SAM-dependent methyltransferase; PFAM: Methyltransferase domain
YP_003506740.1	KEGG: hypothetical protein; SPTR: Q01CI1 Chromosome 03 contig 1, DNA sequence
YP_003506741.1	PFAM: V-type ATPase 116 kDa subunit; SPTR: Q9RWH3 V-type ATP synthase subunit I; KEGG: afw:Anae109_2569 V-type ATPase 116 kDa subunit; COGs: COG1269 H+-ATPase subunit I; InterPro IPR002490; PFAM: V-type ATPase 116kDa subunit family
YP_003506742.1	PFAM: H+transporting two-sector ATPase C subunit; InterPro IPR000245:IPR002379; KEGG: gur:Gura_0419 H+-transporting two-sector ATPase, C subunit; SPTR: A2SST1 H+-transporting two-sector ATPase, C subunit; PFAM: ATP synthase subunit C
YP_003506743.1	PFAM: H+transporting two-sector ATPase E subunit; InterPro IPR002842; KEGG: afw:Anae109_2567 H+transporting two-sector ATPase E subunit; SPTR: P74901 V-type ATP synthase subunit E; PFAM: ATP synthase (E/31 kDa) subunit
YP_003506744.1	PFAM: H+transporting two-sector ATPase C (AC39) subunit; SPTR: P74902 V-type ATP synthase subunit C; InterPro IPR002843; COGs: COG1527 H+-ATPase subunit C; KEGG: noc:Noc_2088 H+-transporting two-sector ATPase, C (AC39) subunit; PFAM: ATP synthase (C/AC39) subunit
YP_003506745.1	PFAM: Vacuolar H+transporting two-sector ATPase F subunit; SPTR: Q72J71 V-type ATP synthase subunit F; InterPro IPR008218; COGs: COG1436 H+-ATPase subunit F; KEGG: ank:AnaeK_2669 vacuolar H+transporting two-sector ATPase F subunit; PFAM: ATP synthase (F/14-kDa) subunit
YP_003506746.1	PRIAM: H(+)-transporting two-sector ATPase; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; InterPro IPR000194:IPR004100:IPR000793; KEGG: acp:A2cp1_2763 H+transporting two-sector ATPase alpha/beta subunit central region; COGs: COG1155 H+-ATPase subunit A; SPTR: Q1IWP3 V-type ATP synthase alpha chain; PFAM: ATP synthase alpha/beta family, nucleotide-binding domain; ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain
YP_003506747.1	PRIAM: H(+)-transporting two-sector ATPase; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; InterPro IPR000194:IPR004100:IPR000793; KEGG: hypothetical protein; COGs: COG1156 H+-ATPase subunit B; SPTR: Q56404 V-type ATP synthase beta chain; PFAM: ATP synthase alpha/beta family, nucleotide-binding domain; ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain
YP_003506748.1	COGs: COG1394 H+-ATPase subunit D; InterPro IPR002699; KEGG: acp:A2cp1_2761 V-type ATPase, D subunit; PFAM: H+transporting two-sector ATPase D subunit; SPTR: O87880 V-type ATP synthase subunit D; TIGRFAM: V-type ATPase, D subunit; PFAM: ATP synthase subunit D; TIGRFAM: H(+)-transporting ATP synthase, vacuolar type, subunit D
YP_003506749.1	PFAM: aminotransferase class I and II; SPTR: A0RZ31 Threonine-phosphate decarboxylase; InterPro IPR004839; COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; KEGG: rfr:Rfer_2615 aminotransferase, class I and II; PFAM: Aminotransferase class I and II
YP_003506750.1	TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; InterPro IPR004485; KEGG: rce:RC1_0322 cobalamin biosynthesis protein CobD; COGs: COG1270 Cobalamin biosynthesis protein CobD/CbiB; SPTR: B8AGH6 Putative uncharacterized protein; PFAM: CobD/Cbib protein; TIGRFAM: cobalamin biosynthesis protein CobD
YP_003506751.1	PFAM: thioesterase superfamily protein; SPTR: A8CWC4 Thioesterase superfamily protein; InterPro IPR006683; COGs: COG1607 Acyl-CoA hydrolase; KEGG: xca:xccb100_4174 putative acyl-CoA thioester hydrolase; PFAM: Thioesterase superfamily
YP_003506752.1	TIGRFAM:5-methyltetrahydropteroyltriglutamate/homoc ysteineS-methyltransferase; PRIAM:5-methyltetrahydropteroyltriglutamate--homocy steineS-methyltransferase; PFAM: Methionine synthase vitamin-B12 independent; Cobalamin-independent synthase MetE domain protein; InterPro IPR013215:IPR002629:IPR006276; KEGG: xfn:XfasM23_1392 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; COGs: COG0620 Methionine synthase II (cobalamin-independent); SPTR: Q87BY8 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; PFAM: Cobalamin-independent synthase, Catalytic domain; Cobalamin-independent synthase, N-terminal domain; TIGRFAM: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase
YP_003506753.1	PRIAM: Ribonucleoside-diphosphate reductase; PFAM: ribonucleotide reductase; ATP-cone domain protein; InterPro IPR000358:IPR005144; KEGG: bat:BAS1270 ribonucleotide-diphosphate reductase subunit beta; COGs: COG0208 Ribonucleotide reductase beta subunit; SPTR: A1XG36 Ribonucleotide reductase beta subunit; PFAM: ATP cone domain; Ribonucleotide reductase, small chain
YP_003506754.1	TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit; PRIAM: Ribonucleoside-diphosphate reductase; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase large subunit domain protein; InterPro IPR000788:IPR013509:IPR013346; KEGG: bar:GBAA1371 ribonucleotide-diphosphate reductase subunit alpha; COGs: COG0209 Ribonucleotide reductase alpha subunit; SPTR: A1XG50 Ribonucleoside-diphosphate reductase; PFAM: Ribonucleotide reductase, barrel domain; Ribonucleotide reductase N-terminal; Ribonucleotide reductase, all-alpha domain; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit
YP_003506755.1	TIGRFAM: NrdI protein; PFAM: NrdI family protein; InterPro IPR004465; KEGG: bsu:BSU17370 ribonucleotide reductase stimulatory protein; COGs: COG1780 Protein involved in ribonucleotide reduction; SPTR: A1XG34 NrdI; PFAM: NrdI Flavodoxin like; TIGRFAM: ribonucleoside-diphosphate reductase 2, operon protein nrdI
YP_003506756.1	KEGG: afw:Anae109_4303 hypothetical protein; SPTR: Q973M3 Putative uncharacterized protein ST0878
YP_003506757.1	KEGG: mgm:Mmc1_1960 hypothetical protein
YP_003506758.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: A7I641 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; InterPro IPR003010; COGs: COG0388 amidohydrolase; KEGG: gbm:Gbem_3509 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Carbon-nitrogen hydrolase
YP_003506759.1	KEGG: lpp:lpp1025 hypothetical protein
YP_003506761.1	TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PRIAM: Aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; InterPro IPR002912:IPR001048:IPR001341:IPR005260; KEGG: pca:Pcar_1006 aspartate kinase; COGs: COG0527 Aspartokinase; SPTR: P61489 Aspartokinase; PFAM: ACT domain; Amino acid kinase family; TIGRFAM: aspartate kinase, monofunctional class; aspartate kinase
YP_003506762.1	InterPro IPR000836; PFAM: phosphoribosyltransferase; COGs: COG2236 phosphoribosyltransferase; KEGG: probable purine phosphoribosyltransferase; SPTR: B6YVI1 Xanthine/guanine phosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain
YP_003506763.1	TIGRFAM: malate dehydrogenase; PRIAM: Malate dehydrogenase; PFAM: Lactate/malate dehydrogenase; InterPro IPR001236:IPR001252:IPR010945; KEGG: abo:ABO_1248 malate dehydrogenase; COGs: COG0039 Malate/lactate dehydrogenase; SPTR: Q1IWC9 Malate dehydrogenase; PFAM: lactate/malate dehydrogenase, NAD binding domain; lactate/malate dehydrogenase, alpha/beta C-terminal domain; TIGRFAM: malate dehydrogenase
YP_003506764.1	PRIAM: Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)); PFAM: malic protein NAD-binding; malic protein domain protein; InterPro IPR001891:IPR012302:IPR012301:IPR015884; KEGG: scl:sce5603 malate dehydrogenase; COGs: COG0281 Malic enzyme; SPTR: A4C9K6 NAD-linked malate dehydrogenase; PFAM: Malic enzyme, NAD binding domain; Malic enzyme, N-terminal domain
YP_003506765.1	PFAM: regulatory protein MerR; SMART: regulatory protein MerR; InterPro IPR000551; KEGG: wsu:WS1254 putative transcriptional regulator; COGs: COG0789 transcriptional regulator protein; SPTR: A5KG51 Putative heat shock transcriptional regulator; PFAM: MerR family regulatory protein
YP_003506766.1	TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; InterPro IPR004268; KEGG: xom:XOO_1510 virulence factor; COGs: COG0728 membrane protein putative virulence factor; SPTR: A0Z9I6 Integral membrane protein MviN; PFAM: MviN-like protein; TIGRFAM: integral membrane protein MviN
YP_003506767.1	PFAM: SMC domain protein; SPTR: Q9RT44 Nuclease sbcCD subunit C; InterPro IPR003395; COGs: COG0419 ATPase involved in DNA repair; KEGG: afw:Anae109_2144 DNA repair exonuclease, SbcC; PFAM: RecF/RecN/SMC N terminal domain; TIGRFAM: exonuclease SbcC
YP_003506768.1	TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; InterPro IPR004843:IPR004593; KEGG: bsu:BSU10640 exonuclease SbcD-like protein; COGs: COG0420 DNA repair exonuclease; SPTR: A7BMU6 Exonuclease SbcD; PFAM: Calcineurin-like phosphoesterase; TIGRFAM: exonuclease SbcD
YP_003506769.1	PFAM: protein of unknown function DUF1385; SPTR: A1HR87 Putative uncharacterized protein; InterPro IPR010787; COGs: COG3872 metal-dependent protein; KEGG: gme:Gmet_0379 hypothetical protein; PFAM: Protein of unknown function (DUF1385)
YP_003506770.1	PFAM: cyclase family protein; SPTR: Q1IY56 Kynurenine formamidase; InterPro IPR007325; COGs: COG1878 metal-dependent hydrolase; KEGG: bcb:BCB4264_A2765 arylformamidase; PFAM: Putative cyclase; TIGRFAM: arylformamidase
YP_003506771.1	PFAM: purine or other phosphorylase family 1; SPTR: A8DJW1 MTA/SAH nucleosidase; InterPro IPR000845; COGs: COG0775 Nucleoside phosphorylase; KEGG: gsu:GSU0453 MTA/SAH nucleosidase; PFAM: Phosphorylase superfamily; TIGRFAM: futalosine nucleosidase
YP_003506772.1	PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593:IPR002052; KEGG: abo:ABO_0878 ABC transporter ATP-binding component; COGs: COG1131 ABC-type multidrug transport system ATPase component; SPTR: B1L616 ABC transporter related; PFAM: ABC transporter
YP_003506773.1	PFAM: ABC-2 type transporter; InterPro IPR013525; KEGG: net:Neut_1007 ABC-2 type transporter; SPTR: Q5UZG6 Putative uncharacterized protein; PFAM: ABC-2 type transporter
YP_003506774.1	KEGG: maq:Maqu_1059 dehydrogenase-like; COGs: COG5322 dehydrogenase; SPTR: A1HRQ5 Shikimate/quinate 5-dehydrogenase; PFAM: protein of unknown function DUF205; Shikimate/quinate 5-dehydrogenase; InterPro IPR006151:IPR003811; PFAM: Domain of unknown function DUF; Shikimate / quinate 5-dehydrogenase; TIGRFAM: conserved hypothetical integral membrane protein TIGR00023
YP_003506775.1	PFAM: Integral membrane protein TerC; SPTR: A6EHA8 Putative uncharacterized protein; InterPro IPR005496; COGs: COG0861 Membrane protein TerC possibly involved in tellurium resistance; KEGG: bsu:BSU02920 hypothetical protein; PFAM: Integral membrane protein TerC family
YP_003506776.1	KEGG: afw:Anae109_3616 methyltransferase type 11; SPTR: A2W937 SAM-dependent methyltransferase
YP_003506777.1	PFAM: Integral membrane protein TerC; SPTR: A6EHA8 Putative uncharacterized protein; InterPro IPR005496; COGs: COG0861 Membrane protein TerC possibly involved in tellurium resistance; KEGG: pca:Pcar_2785 membrane protein TerC; PFAM: Integral membrane protein TerC family
YP_003506778.1	PFAM: putative esterase; SPTR: A3ZPC2 Enterochelin esterase; InterPro IPR000801; COGs: COG2382 Enterochelin esterase; KEGG: mxa:MXAN_0891 putative esterase; PFAM: Putative esterase
YP_003506779.1	PRIAM: Phosphoenolpyruvate carboxylase; PFAM: phosphoenolpyruvate carboxylase; InterPro IPR001449; KEGG: noc:Noc_0770 phosphoenolpyruvate carboxylase; COGs: COG2352 Phosphoenolpyruvate carboxylase; SPTR: Q5SKL7 Phosphoenolpyruvate carboxylase; PFAM: Phosphoenolpyruvate carboxylase
YP_003506780.1	PFAM: NUDIX hydrolase; InterPro IPR000086; KEGG: bcb:BCB4264_A4204 MutT/NUDIX family protein; SPTR: A2BJ80 ADP-ribose pyrophosphatase; PFAM: NUDIX domain
YP_003506781.1	TIGRFAM: riboflavin biosynthesis protein RibF; cytidyltransferase-related domain protein; PFAM: Riboflavin kinase; FAD synthetase; cytidylyltransferase; InterProIPR004820:IPR015864:IPR015865:IPR004821:IPR 002606; KEGG: shn:Shewana3_3137 riboflavin kinase / FMN adenylyltransferase; COGs: COG0196 FAD synthase; SPTR: A2UZZ7 Riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase; FAD synthetase; TIGRFAM: cytidyltransferase-related domain; riboflavin kinase/FMN adenylyltransferase
YP_003506783.1	SPTR: A6PLT2 Competence protein F, putative; COGs: COG1040 amidophosphoribosyltransferase; KEGG: scl:sce7288 hypothetical protein; PFAM: Phosphoribosyl transferase domain; TIGRFAM: comF family protein
YP_003506784.1	TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; PRIAM: S-methyl-5-thioribose-1-phosphate isomerase; PFAM: initiation factor 2B related; InterPro IPR000649:IPR011559:IPR005251; KEGG: afw:Anae109_4334 eIF-2B alpha/beta/delta-related uncharacterized protein; COGs: COG0182 translation initiation factor 2B subunit eIF-2B alpha/beta/delta family; SPTR: Q5SJE2 Methylthioribose-1-phosphate isomerase; PFAM: Initiation factor 2 subunit family; TIGRFAM: S-methyl-5-thioribose-1-phosphate isomerase; eIF-2B alpha/beta/delta-related uncharacterized proteins
YP_003506785.1	SPTR: A4KM76 Lipoprotein lpqF; COGs: COG2367 Beta-lactamase class A; KEGG: abm:ABSDF2266 putative beta-lactamase
YP_003506786.1	TIGRFAM: alpha-glucan phosphorylase; PRIAM: Phosphorylase; PFAM: glycosyl transferase family 35; InterPro IPR000811:IPR011834; KEGG: gsu:GSU0371 carbohydrate phosphorylase family protein; COGs: COG0058 Glucan phosphorylase; SPTR: B7R283 Alpha-glucan phosphorylases subfamily; PFAM: Carbohydrate phosphorylase; TIGRFAM: alpha-glucan phosphorylases
YP_003506787.1	PFAM: protein of unknown function UPF0153; InterPro IPR005358; KEGG: glo:Glov_2626 protein of unknown function UPF0153; SPTR: A3ER11 Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0153)
YP_003506788.1	KEGG: tgr:Tgr7_1687 hypothetical protein
YP_003506789.1	KEGG: gbm:Gbem_2640 tRNA(Ile)-lysidine synthetase; COGs: COG0037 ATPase of the PP-loop superfamily protein implicated in cell cycle control; SPTR: Q5SI38 tRNA(Ile)-lysidine synthase; TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; CMP/dCMP deaminase zinc-binding; InterPro IPR011063:IPR002125:IPR016192:IPR012795; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region; PP-loop family; TIGRFAM: tRNA(Ile)-lysidine synthetase, N-terminal domain
YP_003506790.1	PFAM: tRNA pseudouridine synthase D TruD; SPTR: Q5SI49 tRNA pseudouridine synthase D; InterPro IPR001656:IPR011760; COGs: COG0585 conserved hypothetical protein; KEGG: afw:Anae109_3769 tRNA pseudouridine synthase D TruD; PFAM: tRNA pseudouridine synthase D (TruD); TIGRFAM: conserved hypothetical protein TIGR00094
YP_003506791.1	TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; SPTR: O07347 Signal recognition particle protein; KEGG: bcy:Bcer98_2497 signal recognition particle protein; COGs: COG0541 Signal recognition particle GTPase; InterProIPR004125:IPR013822:IPR000897:IPR003593:IPR 004780; PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; Signal peptide binding domain; TIGRFAM: signal recognition particle protein
YP_003506792.1	TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; InterPro IPR000307; KEGG: ribosomal protein S16; COGs: COG0228 Ribosomal protein S16; SPTR: Q5SJH3 30S ribosomal protein S16; PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16
YP_003506793.1	SPTR: A6NV54 Putative uncharacterized protein; COGs: COG1837 RNA-binding protein (contains KH domain); KEGG: bha:BH2482 hypothetical protein
YP_003506794.1	TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; InterPro IPR007903:IPR002676:IPR011961; KEGG: kpe:KPK_1189 16S rRNA processing protein RimM; COGs: COG0806 RimM protein required for 16S rRNA processing; SPTR: Q72JU7 Ribosome maturation factor rimM; PFAM: RimM N-terminal domain; PRC-barrel domain; TIGRFAM: 16S rRNA processing protein RimM
YP_003506795.1	TIGRFAM: tRNA (guanine-N1)-methyltransferase; PRIAM: tRNA (guanine-N(1)-)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; InterPro IPR016009:IPR002649; KEGG: glo:Glov_2453 tRNA (guanine-N1)-methyltransferase; COGs: COG0336 tRNA-(guanine-N1)-methyltransferase; SPTR: Q72JU8 tRNA (guanine-N(1)-)-methyltransferase; PFAM: tRNA (Guanine-1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase
YP_003506796.1	TIGRFAM: ribosomal protein L19; PFAM: ribosomal protein L19; InterPro IPR001857; KEGG: sme:SMc03863 50S ribosomal protein L19; COGs: COG0335 Ribosomal protein L19; SPTR: P60490 50S ribosomal protein L19; PFAM: Ribosomal protein L19; TIGRFAM: ribosomal protein L19, bacterial type
YP_003506797.1	KEGG: ppw:PputW619_2168 peptidase S8 and S53 subtilisin kexin sedolisin
YP_003506798.1	PFAM: PKD domain containing protein; peptidase S8 and S53 subtilisin kexin sedolisin; SMART: PKD domain containing protein; InterPro IPR000209:IPR000601:IPR001638; KEGG: gme:Gmet_0749 peptidase S8 and S53, subtilisin, kexin, sedolisin; SPTR: A4BTM1 Peptidase S8 and S53, subtilisin, kexin, sedolisin; PFAM: PKD domain; Subtilase family
YP_003506799.1	PFAM: NHL repeat containing protein; InterPro IPR001258; KEGG: mxa:MXAN_6584 NHL repeat protein; SPTR: A1ZYU2 Putative uncharacterized protein; PFAM: NHL repeat
YP_003506800.1	KEGG: hch:HCH_00157 QXW lectin repeat-containing protein
YP_003506802.1	KEGG: rpc:RPC_4058 transposase and inactivated derivative; SPTR: A0YIL6 Putative uncharacterized protein
YP_003506803.1	KEGG: rce:RC1_2731 transposase and inactivated derivative; SPTR: A4BSA3 Transposase and inactivated derivative
YP_003506804.1	PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593:IPR017871; KEGG: gme:Gmet_0523 ABC transporter-related protein; COGs: COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component; SPTR: A8KTD9 ABC transporter, ATP-binding protein; PFAM: ABC nitrate/sulfonate/bicarbonate family transporter, ATPase subunit; ABC transporter
YP_003506805.1	KEGG: met:M446_4340 binding-protein-dependent transport systems inner membrane component; COGs: COG4986 ABC-type anion transport system duplicated permease component; SPTR: A3RZK2 ABC transporter permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; InterPro IPR000515; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003506806.1	SPTR: Q8U4K7 2-phosphoglycerate kinase; COGs: COG2074 2-phosphoglycerate kinase; KEGG: hypothetical protein
YP_003506807.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: GGDEF domain containing protein; Tetratricopeptide domain protein; InterPro IPR001440:IPR000160:IPR013105:IPR013026; KEGG: scl:sce5225 protein kinase; COGs: COG2199 FOG: GGDEF domain; SPTR: A5WQ98 Hypothetical transcriptional regulatory protein, luxR-family; PFAM: Tetratricopeptide repeat; GGDEF domain; Tetratricopeptide repeat; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_003506808.1	TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; InterPro IPR003369:IPR006312; KEGG: dol:Dole_0188 twin arginine-targeting protein translocase; SPTR: B1L5Z3 Sec-independent protein secretion pathway component; PFAM: mttA/Hcf106 family; TIGRFAM: twin arginine-targeting protein translocase, TatA/E family
YP_003506809.1	PFAM: helix-hairpin-helix motif; InterPro IPR000445; KEGG: glo:Glov_3089 hypothetical protein; SPTR: A0YJG5 Putative uncharacterized protein; PFAM: Helix-hairpin-helix motif
YP_003506810.1	PFAM: protein of unknown function DUF421; SPTR: A6E724 Conserved hypothetical membrane-anchored protein; InterPro IPR007353; COGs: COG2323 membrane protein; KEGG: sml:Smlt4588 putative transmembrane protein; PFAM: Protein of unknown function (DUF421)
YP_003506811.1	PFAM: GCN5-related N-acetyltransferase; InterPro IPR000182; KEGG: atc:AGR_C_2411 hypothetical protein; SPTR: A4BG57 Putative acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_003506812.1	PFAM: LmbE family protein; SPTR: A8CQZ7 LmbE family protein; InterPro IPR003737; COGs: COG2120 conserved hypothetical protein LmbE homologs; KEGG: sfu:Sfum_3554 LmbE family protein; PFAM: GlcNAc-PI de-N-acetylase
YP_003506814.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; InterPro IPR003594:IPR003660:IPR003661:IPR005467; KEGG: dac:Daci_1323 histidine kinase; COGs: COG0642 Signal transduction histidine kinase; SPTR: A3ZWY6 Sensor protein; PFAM: HAMP domain; His Kinase A (phosphoacceptor) domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_003506815.1	PFAM: polysaccharide deacetylase; SPTR: A1HR82 Polysaccharide deacetylase; InterPro IPR002509; COGs: COG0726 xylanase/chitin deacetylase; KEGG: jan:Jann_2517 polysaccharide deacetylase; PFAM: Polysaccharide deacetylase
YP_003506816.1	SPTR: A6EKM0 Putative uncharacterized protein; COGs: COG4299 conserved hypothetical protein; KEGG: sfu:Sfum_1534 hypothetical protein; PFAM: Uncharacterized conserved protein (DUF2261)
YP_003506817.1	KEGG: mca:MCA0357 hypothetical protein; SPTR: Q46G63 Conserved membrane protein, predicted permease; PFAM: Domain of unknown function DUF81
YP_003506818.1	PFAM: transcriptional regulator domain protein; response regulator receiver; SMART: response regulator receiver; InterPro IPR001789:IPR001867; KEGG: pag:PLES_22631 two-component response regulator, CopR; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; SPTR: A3KVK3 Putative uncharacterized protein; PFAM: Transcriptional regulatory protein, C terminal; Response regulator receiver domain
YP_003506819.1	KEGG: sus:Acid_1791 putative amino acid transporter; SPTR: A0ABV8 Putative amino acid transporter
YP_003506820.1	SPTR: A1HQ21 Tfp pilus assembly protein PilE-like; InterPro IPR012902; KEGG: har:HEAR2619 fimbrial protein precursor (pilin) (strain P1); PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain
YP_003506821.1	KEGG: lch:Lcho_3103 hypothetical protein
YP_003506825.1	PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; InterPro IPR001482:IPR007831:IPR003593; KEGG: har:HEAR1953 general secretion pathway protein E (type II traffic warden ATPase); COGs: COG2804 Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; SPTR: A2UAC6 Type II secretion system protein E; PFAM: GSPII_E N-terminal domain; Type II/IV secretion system protein
YP_003506826.1	PFAM: type II secretion system protein; SPTR: A4BQH0 Type II secretion system protein F; InterPro IPR003004:IPR001992; COGs: COG1459 Type II secretory pathway component PulF; KEGG: tgr:Tgr7_0227 general secretion pathway protein F; PFAM: Bacterial type II secretion system protein F domain
YP_003506827.1	KEGG: LovB-like polyketide synthase
YP_003506828.1	PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; InterPro IPR001638:IPR001320; KEGG: cco:CCC13826_0413 homoserine kinase (HSK; HK); COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain; SPTR: A5TWI9 Amino acid ABC superfamily ATP binding cassette transporter binding protein; PFAM: Bacterial extracellular solute-binding proteins, family 3
YP_003506829.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; InterPro IPR000515:IPR010065; KEGG: asa:ASA_1529 ABC-type amino acid transporter, permease protein; COGs: COG0765 ABC-type amino acid transport system permease component; SPTR: A1HT15 Polar amino acid ABC transporter, inner membrane subunit; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family
YP_003506830.1	PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix domain protein; InterPro IPR013096:IPR001387; KEGG: sil:SPO0423 DNA-binding protein, putative; SPTR: A4AJ53 Transcription regulator; PFAM: Helix-turn-helix; Cupin domain
YP_003506831.1	TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; InterPro IPR005924:IPR006035:IPR005925; KEGG: dps:DP1391 agmatinase; COGs: COG0010 Arginase/agmatinase/formimionoglutamate hydrolase arginase family; SPTR: A8S4I5 Putative uncharacterized protein; PFAM: Arginase family; TIGRFAM: agmatinase
YP_003506832.1	PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593:IPR017871; KEGG: rce:RC1_3126 general L-amino acid transport ATP-binding protein AapP; COGs: COG1126 ABC-type polar amino acid transport system ATPase component; SPTR: A6F1A8 ABC transporter; PFAM: ABC transporter
YP_003506833.1	PFAM: aminotransferase class I and II; aromatic amino acid beta-eliminating lyase/threonine aldolase; SPTR: A6G0U2 Aminotransferase, putative; InterPro IPR004839:IPR001597; COGs: COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; KEGG: valine-pyruvate transaminase ; K00835 valine--pyruvate aminotransferase; PFAM: Aminotransferase class I and II
YP_003506834.1	TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; GAF domain protein; SMART: metal-dependent phosphohydrolase HD region; GAF domain protein; InterPro IPR006674:IPR003018:IPR003607:IPR006675; KEGG: met:M446_0838 response regulator receiver modulated metal dependent phosphohydrolase; COGs: COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain; SPTR: A3UKV2 Response regulator/phosphatase; PFAM: HD domain; GAF domain; TIGRFAM: uncharacterized domain HDIG
YP_003506835.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; InterPro IPR011717:IPR001440:IPR013026; KEGG: hypothetical protein; SPTR: A7T5N6 Predicted protein; PFAM: Tetratricopeptide repeat
YP_003506836.1	PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; SPTR: A7YF22 Subtilisin (Fragment); InterPro IPR000209:IPR001969; COGs: COG1404 Subtilisin-like serine protease; KEGG: bsu:BSU10300 serine alkaline protease (subtilisin E); PFAM: Subtilase family
YP_003506837.1	PRIAM: Ribose-phosphate diphosphokinase; PFAM: phosphoribosyltransferase; SPTR: A3IE95 Ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; COGs: COG0462 Phosphoribosylpyrophosphate synthetase; InterPro IPR000836:IPR000842:IPR005946; KEGG: bha:BH0066 ribose-phosphate pyrophosphokinase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: ribose-phosphate pyrophosphokinase
YP_003506838.1	PRIAM: Adenosylhomocysteine nucleosidase; PFAM: purine or other phosphorylase family 1; InterPro IPR000845; KEGG: wsu:WS0528 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; COGs: COG0775 Nucleoside phosphorylase; SPTR: A7B2S3 Putative uncharacterized protein; PFAM: Phosphorylase superfamily; TIGRFAM: 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
YP_003506839.1	SPTR: B7QMH8 H/ACA ribonucleoprotein complex protein, putative (Fragment); InterPro IPR001525; KEGG: hypothetical protein
YP_003506840.1	InterPro IPR012902:IPR001120; KEGG: tbd:Tbd_1864 pilus assembly protein; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; general secretion pathway protein H
YP_003506841.1	InterPro IPR001120:IPR012902; KEGG: cvi:CV_4081 hypothetical protein; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain
YP_003506842.1	InterPro IPR012902; KEGG: xac:XAC2667 hypothetical protein; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain
YP_003506843.1	PRIAM: S-ribosylhomocysteine lyase; PFAM: LuxS protein; InterPro IPR003815; KEGG: hso:HS_0550 S-ribosylhomocysteinase; COGs: COG1854 LuxS protein involved in autoinducer AI2 synthesis; SPTR: Q9RRU8 S-ribosylhomocysteine lyase; PFAM: S-Ribosylhomocysteinase (LuxS)
YP_003506844.1	PFAM: cation transporter; SPTR: Q8TQQ7 Sodium transport protein; InterPro IPR003445; COGs: COG0168 Trk-type K+ transport systems membrane components; KEGG: dde:Dde_2029 K+ transporter trk; PFAM: Cation transport protein; TIGRFAM: potassium uptake protein, TrkH family
YP_003506845.1	PFAM: cation transporter; SPTR: Q8PU48 Trk system potassium uptake protein; InterPro IPR003445; COGs: COG0168 Trk-type K+ transport systems membrane components; KEGG: dde:Dde_2029 K+ transporter trk; PFAM: Cation transport protein; TIGRFAM: potassium uptake protein, TrkH family
YP_003506846.1	PFAM: TrkA-N domain protein; SPTR: Q8TQQ8 Potassium uptake protein; InterPro IPR006036:IPR003148:IPR006037; COGs: COG0569 K+ transport systems NAD-binding component; KEGG: dde:Dde_2030 potassium transporter peripheral membrane component; PFAM: TrkA-N domain; TrkA-C domain
YP_003506847.1	TIGRFAM: MiaB-like tRNA modifying enzyme YliG; RNA modification enzyme, MiaB family; PFAM: Protein of unknown function UPF0004 ; Radical SAM domain protein; deoxyribonuclease/rho motif-related TRAM; SMART: Elongator protein 3/MiaB/NifB; InterProIPR007197:IPR002792:IPR013848:IPR006638:IPR 005839:IPR005840; KEGG: sbc:SbBS512_E2510 MiaB-like tRNA modifying enzyme YliG; COGs: COG0621 2-methylthioadenine synthetase; SPTR: P0AEI4 Ribosomal protein S12 methylthiotransferase rimO; PFAM: Radical SAM superfamily; Uncharacterized protein family UPF0004; TRAM domain; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme YliG, TIGR01125
YP_003506848.1	PFAM: PEGA domain protein; SPTR: A3LEQ5 Putative uncharacterized protein; InterPro IPR013229; COGs: COG1426 conserved hypothetical protein; KEGG: tgr:Tgr7_2049 transcriptional regulator; PFAM: PEGA domain
YP_003506849.1	PFAM: Indigoidine synthase A family protein; SPTR: A6FRS5 Indigoidine synthase A like protein; KEGG: dsh:Dshi_2110 indigoidine synthase A family protein; COGs: COG2313 Uncharacterized protein involved in pigment biosynthesis; InterPro IPR007342; PFAM: Indigoidine synthase A like protein
YP_003506850.1	COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterProIPR001440:IPR011716:IPR000160:IPR013105:IPR 013026:IPR000005; TIGRFAM: diguanylate cyclase; KEGG: rlt:Rleg2_6549 diguanylate cyclase; SMART: GGDEF domain containing protein; Tetratricopeptide domain protein; SPTR: A0YZ58 Tetratricopeptide; PFAM: GGDEF domain containing protein; TPR repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide repeat; GGDEF domain; Tetratricopeptide repeat; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_003506852.1	PFAM: protein of unknown function DUF395 YeeE/YedE; InterPro IPR007272; KEGG: par:Psyc_1255 TolB periplamsic protein; SPTR: A6CJ81 Possible TolB periplamsic protein; PFAM: YeeE/YedE family (DUF395)
YP_003506854.1	PRIAM: Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; SMART: ATP-binding region ATPase domain protein; InterPro IPR004358:IPR011712:IPR003594:IPR005467; KEGG: sus:Acid_2189 histidine kinase; COGs: COG4585 Signal transduction histidine kinase; SPTR: A0ACH5 Putative two-component system sensor kinase; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_003506855.1	PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; InterPro IPR000792:IPR013249:IPR001789; KEGG: smt:Smal_2340 two component transcriptional regulator, LuxR family; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; SPTR: A3TPE2 Two-component system, regulatory protein; PFAM: Bacterial regulatory proteins, luxR family; Response regulator receiver domain
YP_003506858.1	TIGRFAM: leucyl-tRNA synthetase; PFAM: tRNA synthetase valyl/leucyl anticodon-binding; aminoacyl-tRNA synthetase class Ia; tRNA synthetase class I (M); InterProIPR002302:IPR015413:IPR002300:IPR013155:IPR 001412; KEGG: gsu:GSU2209 leucyl-tRNA synthetase; COGs: COG0495 Leucyl-tRNA synthetase; SPTR: A5V1W3 Leucyl-tRNA synthetase; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; tRNA synthetases class I (M); TIGRFAM: leucyl-tRNA synthetase, eubacterial and mitochondrial family
YP_003506859.1	PFAM: NMT1/THI5 like domain protein; SPTR: A7BCC4 Putative uncharacterized protein; InterPro IPR015168; COGs: COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components; KEGG: atc:AGR_L_129GM putative sulfonate/nitrate transport system substrate-binding protein; PFAM: NMT1/THI5 like
YP_003506860.1	PFAM: ABC transporter related; binding-protein-dependent transport systems inner membrane component; SMART: AAA ATPase; InterPro IPR000515:IPR003439:IPR003593:IPR017871; KEGG: met:M446_0398 ABC transporter related; COGs: COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component; SPTR: A7I692 ABC transporter related; PFAM: Binding-protein-dependent transport system inner membrane component; ABC transporter
YP_003506861.1	PFAM: zinc finger SWIM domain protein; SPTR: Q5V1X9 Putative uncharacterized protein; InterPro IPR007527; COGs: COG4715 conserved hypothetical protein; KEGG: afr:AFE_0942 DNA helicase, SNF2/RAD54 family; PFAM: SWIM zinc finger
YP_003506862.1	PFAM: ribonuclease BN; InterPro IPR004664; KEGG: gdi:GDI3792 putative ribonuclease; SPTR: A0YM22 Probable ribonuclease; PFAM: Ribonuclease BN-like family; TIGRFAM: YihY family protein (not ribonuclease BN)
YP_003506863.1	TIGRFAM: gamma-glutamyl phosphate reductase; PRIAM: Glutamate-5-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; InterPro IPR015590:IPR000965; KEGG: sfu:Sfum_3644 gamma-glutamyl phosphate reductase; COGs: COG0014 Gamma-glutamyl phosphate reductase; SPTR: O86053 Gamma-glutamyl phosphate reductase; PFAM: Aldehyde dehydrogenase family; TIGRFAM: gamma-glutamyl phosphate reductase
YP_003506864.1	TIGRFAM: glutamate 5-kinase; PRIAM: Glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein; InterPro IPR001057:IPR002478:IPR001048:IPR005715; SPTR: Q9ZG98 Glutamate 5-kinase; KEGG: sfu:Sfum_3643 glutamate 5-kinase; COGs: COG0263 Glutamate 5-kinase; SMART: PUA domain containing protein; PFAM: Amino acid kinase family; PUA domain; TIGRFAM: uncharacterized domain 2; glutamate 5-kinase
YP_003506865.1	COGs: COG1164 Oligoendopeptidase F; InterPro IPR013647:IPR001567:IPR004438; KEGG: bcb:BCB4264_A1247 oligoendopeptidase F; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F; SPTR: O31605 Oligoendopeptidase F homolog; TIGRFAM: oligoendopeptidase F; PFAM: Oligopeptidase F; Peptidase family M3; TIGRFAM: oligoendopeptidase F
YP_003506866.1	TIGRFAM: beta-galactosidase; PRIAM: Beta-glucosidase; PFAM: glycoside hydrolase family 1; InterPro IPR001360:IPR017736; KEGG: scl:sce4297 Beta-glucosidase; COGs: COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase; SPTR: A6EHL7 B-glycosidase, glycoside hydrolase family 1 protein; PFAM: Glycosyl hydrolase family 1; TIGRFAM: beta-galactosidase
YP_003506867.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: P54721 Uncharacterized protein yfiE; InterPro IPR004360; COGs: COG2514 ring-cleavage extradiol dioxygenase; KEGG: bsu:BSU08240 hypothetical protein; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
YP_003506868.1	PFAM: dTDP-4-dehydrorhamnose reductase; Male sterility domain; polysaccharide biosynthesis protein CapD; NAD-dependent epimerase/dehydratase; SPTR: A0A018 MoeS5; InterPro IPR013120:IPR003869:IPR005913:IPR001509; COGs: COG1091 dTDP-4-dehydrorhamnose reductase; KEGG: sfu:Sfum_1538 dTDP-4-dehydrorhamnose reductase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: dTDP-4-dehydrorhamnose reductase
YP_003506869.1	KEGG: bcy:Bcer98_1989 pantothenate kinase; SPTR: B1L7B5 ATPase BadF/BadG/BcrA/BcrD type; TIGRFAM: pantothenate kinase, eukaryotic/staphyloccocal type
YP_003506871.1	PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; SPTR: A6PQ75 tRNA/rRNA methyltransferase (SpoU) (Fragment); InterPro IPR001537:IPR013123; COGs: COG0566 rRNA methylase; KEGG: atc:AGR_C_593 rRNA methylase; PFAM: SpoU rRNA Methylase family; RNA 2'-O ribose methyltransferase substrate binding
YP_003506872.1	PFAM: chaperonin Cpn10; SPTR: P61493 10 kDa chaperonin; InterPro IPR001476; COGs: COG0234 Co-chaperonin GroES (HSP10); KEGG: bha:BH0561 co-chaperonin GroES; PFAM: Chaperonin 10 Kd subunit
YP_003506873.1	TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; InterPro IPR002423:IPR001844:IPR012723; KEGG: mfa:Mfla_0364 chaperonin GroEL; COGs: COG0459 Chaperonin GroEL (HSP60 family); SPTR: Q5SLM2 60 kDa chaperonin; PFAM: TCP-1/cpn60 chaperonin family; TIGRFAM: chaperonin GroL
YP_003506874.1	PFAM: helix-turn-helix HxlR type; SPTR: A7VYK5 Putative uncharacterized protein; InterPro IPR002577; COGs: COG1733 transcriptional regulator protein; KEGG: rle:RL1463 hypothetical protein; PFAM: HxlR-like helix-turn-helix
YP_003506875.1	PFAM: helix-turn-helix HxlR type; SPTR: A7VYK5 Putative uncharacterized protein; InterPro IPR002577; COGs: COG1733 transcriptional regulator protein; KEGG: dal:Dalk_2971 transcriptional regulator, HxlR family; PFAM: HxlR-like helix-turn-helix
YP_003506876.1	PFAM: YceI family protein; SPTR: A3THP1 Putative uncharacterized protein; InterPro IPR007372; COGs: COG2353 conserved hypothetical protein; KEGG: mxa:MXAN_4355 YceI-like family protein; PFAM: YceI-like domain
YP_003506878.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; SPTR: A6CTS2 Acetyl-CoA dehydrogenase; InterProIPR006090:IPR006092:IPR006091:IPR013107:IPR 006089; COGs: COG1960 Acyl-CoA dehydrogenase; KEGG: bcy:Bcer98_3595 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain
YP_003506880.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; SPTR: A6G2X1 Acyl-CoA dehydrogenase domain protein; InterPro IPR006090:IPR006092:IPR006091:IPR013107; COGs: COG1960 Acyl-CoA dehydrogenase; KEGG: dal:Dalk_2466 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, N-terminal domain
YP_003506881.1	PFAM: aminoglycoside phosphotransferase; SPTR: A6G2X0 Aminoglycoside phosphotransferase; InterPro IPR002575:IPR008271; COGs: COG3173 aminoglycoside phosphotransferase; KEGG: pfo:Pfl01_3418 aminoglycoside phosphotransferase; PFAM: Phosphotransferase enzyme family
YP_003506882.1	PFAM: Arginase/agmatinase/formiminoglutamase; SPTR: A6FSQ7 Agmatinase, putative; InterPro IPR006035; COGs: COG0010 Arginase/agmatinase/formimionoglutamate hydrolase arginase family; KEGG: speB; agmatinase ; K01480 agmatinase; PFAM: Arginase family; TIGRFAM: agmatinase
YP_003506884.1	TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; InterPro IPR001437:IPR006359; KEGG: bha:BH1276 transcriptional elongation factor; COGs: COG0782 Transcription elongation factor; SPTR: Q8R7N0 Transcription elongation factor greA; PFAM: Prokaryotic transcription elongation factor, GreA/GreB, C-terminal domain; Prokaryotic transcription elongation factor, GreA/GreB, N-terminal domain; TIGRFAM: transcription elongation factor GreA
YP_003506885.1	TIGRFAM: stationary-phase survival protein SurE; PRIAM: 5'-nucleotidase; PFAM: Survival protein SurE; InterPro IPR002828; KEGG: gme:Gmet_1419 exopolyphosphatase / 5'-nucleotidase / 3'-nucleotidase; COGs: COG0496 acid phosphatase; SPTR: Q72H70 5'-nucleotidase surE 1; PFAM: Survival protein SurE; TIGRFAM: 5'/3'-nucleotidase SurE
YP_003506886.1	PRIAM: Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; InterProIPR004358:IPR003594:IPR003660:IPR003661:IPR 005467; KEGG: gsu:GSU0452 sensor histidine kinase; COGs: COG0642 Signal transduction histidine kinase; SPTR: A0YYH5 Sensor protein; PFAM: His Kinase A (phosphoacceptor) domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_003506887.1	PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; InterPro IPR001789:IPR001867:IPR005829; KEGG: bsu:BSU13250 hypothetical protein; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; SPTR: A3IQV4 Two component Transcriptional regulator, Winged helix family protein; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_003506888.1	PFAM: Smr protein/MutS2; DNA mismatch repair protein MutS domain protein; SMART: DNA mismatch repair protein MutS domain protein; Smr protein/MutS2; MutS III domain protein; SPTR: Q5KWF8 MutS2 protein; TIGRFAM: MutS2 family protein; COGs: COG1193 Mismatch repair ATPase (MutS family); InterPro IPR000432:IPR002625:IPR007696:IPR005747; KEGG: bsu:BSU28580 recombination and DNA strand exchange inhibitor protein; PFAM: MutS domain V; Smr domain; TIGRFAM: MutS2 family protein
YP_003506889.1	TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; InterPro IPR002637; KEGG: gsu:GSU1794 HAM1 protein; COGs: COG0127 Xanthosine triphosphate pyrophosphatase; SPTR: Q5SHS6 Nucleoside-triphosphatase; PFAM: Ham1 family; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family
YP_003506890.1	TIGRFAM: ribonuclease PH; PRIAM: tRNA nucleotidyltransferase; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; SPTR: Q65GG2 Ribonuclease PH; KEGG: abb:ABBFA_003469 ribonuclease PH; COGs: COG0689 RNase PH; InterPro IPR015847:IPR001247:IPR002381; PFAM: 3' exoribonuclease family, domain 1; 3' exoribonuclease family, domain 2; TIGRFAM: ribonuclease PH
YP_003506891.1	PFAM: metalloenzyme domain protein; InterPro IPR006124:IPR010916; KEGG: acp:A2cp1_1477 metalloenzyme domain protein; SPTR: A1HPF5 Metalloenzyme domain protein; PFAM: Metalloenzyme superfamily
YP_003506892.1	PFAM: OsmC family protein; SPTR: A4CL71 Osmotically inducible protein OsmC; InterPro IPR003718; COGs: COG1764 redox protein regulator of disulfide bond formation; KEGG: mlo:mll8194 osmotically inducible protein OsmC; PFAM: OsmC-like protein; TIGRFAM: peroxiredoxin, OsmC subfamily
YP_003506893.1	TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; InterPro IPR013249:IPR007627:IPR007630:IPR014284; KEGG: mxa:MXAN_3686 RNA polymerase sigma-70 factor, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; SPTR: A0ZCP6 Putative uncharacterized protein; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_003506894.1	SPTR: A3YWC7 Putative uncharacterized protein; InterPro IPR006311; KEGG: acr:Acry_1332 hypothetical protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2337)
YP_003506895.1	PFAM: Aldehyde Dehydrogenase; SPTR: A3TQ55 Succinic semialdehyde dehydrogenase; InterPro IPR015590:IPR016160; COGs: COG1012 NAD-dependent aldehyde dehydrogenase; KEGG: sus:Acid_1786 succinic semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase family
YP_003506896.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Q87GB7 Maltose transport system permease protein malF; InterPro IPR000515; COGs: COG1175 ABC-type sugar transport systems permease components; KEGG: vpa:VPA1400 maltose transporter membrane protein; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003506897.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: P26468 Maltose transport system permease protein malG; InterPro IPR000515; COGs: COG3833 ABC-type maltose transport systems permease component; KEGG: stm:STM4227 maltose transporter permease; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003506898.1	PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; InterPro IPR006047:IPR006589; KEGG: asa:ASA_0164 maltodextrin glucosidase; COGs: COG0366 Glycosidase; SPTR: A4BC90 Glycosidase; PFAM: Alpha amylase, catalytic domain
YP_003506900.1	KEGG: afw:Anae109_3641 hypothetical protein
YP_003506901.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; SPTR: A4CIG6 Short chain dehydrogenase; InterPro IPR002347:IPR002198:IPR013968; COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; KEGG: sus:Acid_2708 short chain dehydrogenase; PFAM: short chain dehydrogenase
YP_003506902.1	PFAM: extracellular solute-binding protein family 1; SPTR: B5IRL8 Bacterial extracellular solute-binding protein, putative; InterPro IPR006060:IPR006059; COGs: COG2182 Maltose-binding periplasmic protein/domains; KEGG: pmy:Pmen_3132 maltose ABC transporter periplasmic protein; PFAM: Bacterial extracellular solute-binding protein
YP_003506903.1	PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: PDZ/DHR/GLGF domain protein; InterPro IPR001940:IPR001254:IPR001478; KEGG: sfu:Sfum_2411 peptidase S1 and S6, chymotrypsin/Hap; COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; SPTR: A0Z777 Peptidase S1 and S6, chymotrypsin/Hap; PFAM: Trypsin
YP_003506904.1	PFAM: aminotransferase class-III; SPTR: A2U752 Aminotransferase class-III; InterPro IPR005814; COGs: COG0160 4-aminobutyrate aminotransferase and related aminotransferase; KEGG: kpn:KPN_00577 hypothetical protein; PFAM: Aminotransferase class-III
YP_003506905.1	SPTR: O87172 4-alpha-glucanotransferase; KEGG: 4-alpha-glucanotransferase (EC:2.4.1.25); K00705 4-alpha-glucanotransferase; COGs: COG1640 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77; TIGRFAM: 4-alpha-glucanotransferase; PRIAM: 4-alpha-glucanotransferase; InterPro IPR003385; PFAM: 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase
YP_003506906.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; InterPro IPR004360; KEGG: mlo:mlr4624 lactoylglutathione lyase; SPTR: A3U2S2 Putative uncharacterized protein; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
YP_003506907.1	PFAM: 5-formyltetrahydrofolate cyclo-ligase; SPTR: Q976L8 Putative uncharacterized protein ST0172; InterPro IPR002698; COGs: COG0212 5-formyltetrahydrofolate cyclo-ligase; KEGG: bha:BH0836 hypothetical protein; PFAM: 5-formyltetrahydrofolate cyclo-ligase family
YP_003506908.1	PFAM: beta-lactamase; SPTR: A3LLF3 Putative uncharacterized protein; InterPro IPR001466; COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; KEGG: sal:Sala_2508 beta-lactamase; PFAM: Beta-lactamase
YP_003506909.1	PRIAM: Ribosyldihydronicotinamide dehydrogenase (quinone); PFAM: NAD(P)H dehydrogenase (quinone); InterPro IPR003680; KEGG: abm:ABSDF0690 putative NAD(P)H quinone oxidoreductase; COGs: COG2249 Putative NADPH-quinone reductase (modulator of drug activity B); SPTR: A2WI02 Putative uncharacterized protein; PFAM: Flavodoxin-like fold
YP_003506910.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; SPTR: A6CQ39 Short-chain acyl-CoA dehydrogenase; butyryl-CoA dehydrogenase; InterProIPR006090:IPR006092:IPR006091:IPR013107:IPR 006089; COGs: COG1960 Acyl-CoA dehydrogenase; KEGG: bcy:Bcer98_3863 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA dehydrogenase, N-terminal domain; Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain
YP_003506911.1	PFAM: protein of unknown function DUF218; SPTR: A3YWV5 Putative uncharacterized protein; InterPro IPR003848; COGs: COG1434 conserved hypothetical protein; KEGG: bbr:BB3392 hypothetical protein; PFAM: DUF218 domain
YP_003506912.1	PRIAM: 2-oxoglutarate synthase; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; InterPro IPR011766; KEGG: glo:Glov_1075 thiamine pyrophosphate protein domain protein TPP-binding; COGs: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase beta subunit; SPTR: A0YC51 Ferrodoxin oxidoreductase beta subunit; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YP_003506913.1	PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; SPTR: A0YC52 2-ketoglutarate: NADP oxidoreductase, alpha subunit; InterPro IPR002869:IPR002880; COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; KEGG: glo:Glov_1076 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; PFAM: Pyruvate ferredoxin/flavodoxin oxidoreductase; Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-binding domain
YP_003506914.1	PFAM: amidohydrolase; Amidohydrolase 3; SPTR: A2W0B3 Amidohydrolase; InterPro IPR006680:IPR013108; COGs: COG1228 Imidazolonepropionase and related amidohydrolase; KEGG: rru:Rru_A3412 amidohydrolase; PFAM: Amidohydrolase family
YP_003506915.1	KEGG: psa:PST_0189 hypothetical protein; SPTR: A8DJP8 Putative uncharacterized protein
YP_003506916.1	PFAM: protein of unknown function DUF897; SPTR: A8DJP7 Sodium bicarbonate cotransporter; InterPro IPR010293; COGs: COG3329 permease; KEGG: azo:azo1481 hypothetical protein; PFAM: Domain of unknown function (DUF897)
YP_003506917.1	PFAM: thioesterase superfamily protein; SPTR: A3ZTS9 Putative uncharacterized protein; InterPro IPR006683; COGs: COG0824 thioesterase; KEGG: sun:SUN_0150 hypothetical protein; PFAM: Thioesterase superfamily; TIGRFAM: conserved hypothetical protein TIGR00051
YP_003506918.1	PFAM: isocitrate/isopropylmalate dehydrogenase; SPTR: A3I2T7 Isocitrate dehydrogenase; KEGG: sus:Acid_2824 isocitrate dehydrogenase; PRIAM: Isocitrate dehydrogenase (NADP(+)); InterPro IPR001804:IPR014273; TIGRFAM: isocitrate dehydrogenase; COGs: COG0473 Isocitrate/isopropylmalate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: isocitrate dehydrogenase; isocitrate dehydrogenase, NADP-dependent, prokaryotic type
YP_003506919.1	TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PRIAM: Phosphoribosylaminoimidazole carboxylase; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; InterPro IPR000031; KEGG: sde:Sde_2803 phosphoribosylaminoimidazole carboxylase; COGs: COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase; SPTR: P72157 Phosphoribosylaminoimidazole carboxylase catalytic subunit; PFAM: AIR carboxylase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, PurE protein
YP_003506920.1	TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase subunit; PRIAM: Phosphoribosylaminoimidazole carboxylase; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; phosphoribosylglycinamide synthetase; InterProIPR003135:IPR000115:IPR011761:IPR006140:IPR 005875; KEGG: xcb:XC_1614 phosphoribosylaminoimidazole carboxylase ATPase subunit; COGs: COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase); SPTR: A8CWF3 Phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: ATP-grasp domain; TIGRFAM: phosphoribosylaminoimidazole carboxylase, PurK protein
YP_003506921.1	TIGRFAM: methionine synthase; PFAM: homocysteine S-methyltransferase; Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; dihydropteroate synthase DHPS; Vitamin B12 dependent methionine synthase activation region; InterProIPR006158:IPR003759:IPR003726:IPR000489:IPR 004223:IPR011822; KEGG: acr:Acry_1700 methionine synthase; COGs: COG1410 Methionine synthase I cobalamin-binding domain; SPTR: A2AXF3 Putative methionine synthase; PFAM: B12 binding domain; B12 binding domain; Vitamin B12 dependent methionine synthase, activation domain; Pterin binding enzyme; Homocysteine S-methyltransferase; TIGRFAM: 5-methyltetrahydrofolate--homocysteine methyltransferase; methylmalonyl-CoA mutase C-terminal domain
YP_003506922.1	PFAM: domain of unknown function DUF1730; 4Fe-4S ferredoxin iron-sulfur binding domain protein; HEAT domain containing protein; SPTR: A3ZV21 Putative uncharacterized protein; InterPro IPR001450:IPR013542:IPR000357:IPR017900; COGs: COG1600 Uncharacterized Fe-S protein; KEGG: swi:Swit_2899 putative iron-sulfur cluster binding protein; PFAM: HEAT repeat; 4Fe-4S binding domain; Domain of unknown function (DUF1730); TIGRFAM: iron-sulfur cluster binding protein, putative
YP_003506923.1	PFAM: metallophosphoesterase; InterPro IPR004843; KEGG: afw:Anae109_3653 phosphodiesterase; SPTR: B5IGL0 Phosphodiesterase, MJ0936 family; PFAM: Calcineurin-like phosphoesterase
YP_003506924.1	TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; InterPro IPR003010:IPR005829:IPR004563; KEGG: ppw:PputW619_0630 apolipoprotein N-acyltransferase; COGs: COG0815 Apolipoprotein N-acyltransferase; SPTR: Q88DN4 Apolipoprotein N-acyltransferase; PFAM: Carbon-nitrogen hydrolase; TIGRFAM: apolipoprotein N-acyltransferase
YP_003506925.1	TIGRFAM: preprotein translocase, SecG subunit; InterPro IPR004692; KEGG: dds:Ddes_1177 preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; PFAM: Preprotein translocase SecG subunit; TIGRFAM: protein translocase, SecG subunit
YP_003506926.1	PFAM: extracellular solute-binding protein family 5; SPTR: Q9RU24 Probable ABC transporter-binding protein DR_1571; InterPro IPR000914; COGs: COG0747 ABC-type dipeptide transport system periplasmic component; KEGG: sus:Acid_3456 extracellular solute-binding protein; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle
YP_003506927.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A6CLT0 Putative uncharacterized protein; InterPro IPR000515; COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; KEGG: plu:plu0301 dipeptide transporter permease DppB; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003506928.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A0YIN6 Binding-protein-dependent transport systems inner membrane component; InterPro IPR000515; COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; KEGG: rec:RHECIAT_PA0000041 probable oligopeptide ABC transporter, permease protein; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003506929.1	KEGG: bpt:Bpet1581 putative peptide ABC transporter, ATP-binding protein; COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component; InterProIPR013563:IPR003439:IPR003593:IPR017871:IPR 010066; SPTR: Q8YBN6 Putative peptide import ATP-binding protein BMEII0863; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain
YP_003506930.1	TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; InterProIPR013563:IPR003439:IPR003593:IPR017871:IPR 010066; KEGG: bja:blr1357 peptide ABC transporter ATP-binding protein; COGs: COG4608 ABC-type oligopeptide transport system ATPase component; SPTR: Q8YBN5 Putative peptide import ATP-binding protein BMEII0864; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain
YP_003506931.1	SPTR: A4TXU9 Putative uncharacterized protein; COGs: COG5316 conserved hypothetical protein; KEGG: pca:Pcar_2788 hypothetical protein
YP_003506932.1	PRIAM: Acylaminoacyl-peptidase; PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; InterPro IPR001375; KEGG: bsu:BSU32230 hypothetical protein; COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; SPTR: Q5JHC8 Acylamino acid-releasing enzyme; PFAM: Prolyl oligopeptidase family
YP_003506933.1	KEGG: mxa:MXAN_6763 hypothetical protein; SPTR: A4CQ88 Putative uncharacterized protein
YP_003506934.1	PFAM: Roadblock/LC7 family protein; InterPro IPR004942; KEGG: bbt:BBta_6136 hypothetical protein; SPTR: A3CU89 Roadblock/LC7 family protein; PFAM: Roadblock/LC7 domain
YP_003506935.1	InterPro IPR004942; PFAM: Roadblock/LC7 family protein; PFAM: Roadblock/LC7 domain
YP_003506936.1	TIGRFAM: recombination protein RecR; PFAM: TOPRIM domain protein; Zinc finger C4-type, RecR; SMART: Toprim sub domain protein; InterPro IPR006171:IPR015967:IPR006154:IPR000093; KEGG: mfa:Mfla_1574 recombination protein RecR; COGs: COG0353 Recombinational DNA repair protein (RecF pathway); SPTR: Q5SHY0 Recombination protein recR; PFAM: Toprim domain; RecR protein; TIGRFAM: recombination protein RecR
YP_003506937.1	PFAM: conserved hypothetical protein; SPTR: Q5SHY1 UPF0133 protein TTHA1599; KEGG: bcu:BCAH820_0024 conserved hypothetical protein TIGR00103; COGs: COG0718 conserved hypothetical protein; InterPro IPR004401; PFAM: Uncharacterised BCR, YbaB family COG0718; TIGRFAM: conserved hypothetical protein TIGR00103
YP_003506938.1	PFAM: major facilitator superfamily MFS_1; InterPro IPR011701:IPR007114; KEGG: bca:BCE_2582 permease, putative; SPTR: A3K2B1 Antibiotic efflux protein; PFAM: Major Facilitator Superfamily
YP_003506940.1	PRIAM: Phosphoprotein phosphatase; PFAM: Protein phosphatase 2C-like; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; InterPro IPR014045:IPR010822:IPR001932; KEGG: glo:Glov_1588 protein serine/threonine phosphatase; COGs: COG0631 Serine/threonine protein phosphatase; SPTR: B5ISB5 Protein phosphatase 2C, putative; PFAM: Stage II sporulation protein E (SpoIIE)
YP_003506941.1	PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; InterProIPR001245:IPR017442:IPR002290:IPR017441:IPR 008271:IPR000719; KEGG: aba:Acid345_4392 serine/threonine protein kinase; COGs: COG0515 Serine/threonine protein kinase; SPTR: A7VUU7 Putative uncharacterized protein; PFAM: Protein kinase domain
YP_003506942.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; SPTR: A8MAP0 Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; InterPro IPR000866:IPR013740; COGs: COG1225 Peroxiredoxin; KEGG: rpb:RPB_3002 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: AhpC/TSA family
YP_003506943.1	COGs: COG1225 Peroxiredoxin; InterPro IPR000866:IPR013740; KEGG: nwi:Nwi_1670 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; SPTR: A8MAP0 Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; PFAM: AhpC/TSA family
YP_003506944.1	PFAM: FAD dependent oxidoreductase; SPTR: A6GB20 Lycopene cyclase, putative; InterPro IPR000759:IPR006076; COGs: COG1233 Phytoene dehydrogenase and related protein; KEGG: hypothetical protein; K09835 carotenoid isomerase; PFAM: FAD dependent oxidoreductase; TIGRFAM: C-3',4' desaturase CrtD
YP_003506945.1	PRIAM: Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; InterPro IPR001460:IPR005311; KEGG: mgm:Mmc1_1415 peptidoglycan glycosyltransferase; COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; SPTR: A6GMM1 Penicillin-binding protein, transpeptidase; PFAM: Penicillin-binding Protein dimerisation domain; Penicillin binding protein transpeptidase domain; TIGRFAM: penicillin-binding protein 2
YP_003506946.1	TIGRFAM: rod shape-determining protein MreD; InterPro IPR007227; KEGG: glo:Glov_2493 rod shape-determining protein MreD; TIGRFAM: rod shape-determining protein MreD
YP_003506947.1	PFAM: Rod shape-determining protein MreC; SPTR: A1HP03 Rod shape-determining protein MreC; InterPro IPR007221; COGs: COG1792 Cell shape-determining protein; KEGG: smt:Smal_3453 rod shape-determining protein MreC; PFAM: rod shape-determining protein MreC; TIGRFAM: rod shape-determining protein MreC
YP_003506948.1	TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; InterPro IPR001185; KEGG: aba:Acid345_0006 large conductance mechanosensitive channel protein; COGs: COG1970 Large-conductance mechanosensitive channel; SPTR: A5UVR8 Large-conductance mechanosensitive channel; PFAM: Large-conductance mechanosensitive channel, MscL; TIGRFAM: large conductance mechanosensitive channel protein
YP_003506949.1	PFAM: glycosyl transferase group 1; SPTR: P42982 Uncharacterized glycosyltransferase ypjH; InterPro IPR001296; COGs: COG0438 Glycosyltransferase; KEGG: sus:Acid_7283 glycosyl transferase, group 1; PFAM: Glycosyl transferases group 1
YP_003506950.1	PFAM: aminotransferase class I and II; SPTR: Q9RRM7 Histidinol-phosphate aminotransferase; InterPro IPR004839:IPR001917; COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; KEGG: afw:Anae109_0323 aminotransferase class I and II; PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase
YP_003506951.1	PRIAM: Imidazoleglycerol-phosphate dehydratase; PFAM: imidazoleglycerol-phosphate dehydratase; InterPro IPR000807; KEGG: azc:AZC_4502 imidazoleglycerol-phosphate dehydratase; COGs: COG0131 Imidazoleglycerol-phosphate dehydratase; SPTR: P61661 Imidazoleglycerol-phosphate dehydratase; PFAM: Imidazoleglycerol-phosphate dehydratase
YP_003506952.1	TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I; CobB/CobQ domain protein glutamine amidotransferase; InterPro IPR011702:IPR011698:IPR000991:IPR010139; KEGG: aba:Acid345_3686 imidazole glycerol phosphate synthase subunit HisH; COGs: COG0118 Glutamine amidotransferase; SPTR: Q7SIC0 Imidazole glycerol phosphate synthase subunit hisH; PFAM: Glutamine amidotransferase class-I; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
YP_003506953.1	PFAM: PfkB domain protein; SPTR: A8ICA8 PfkB-type carbohydrate kinase (Fragment); InterPro IPR002139:IPR011611; COGs: COG0524 Sugar kinase ribokinase family; KEGG: PfkB-type carbohydrate kinase ; K00852 ribokinase; PFAM: pfkB family carbohydrate kinase
YP_003506954.1	TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; SMART: ribosomal RNA adenine methylase transferase; InterPro IPR001737:IPR011530; KEGG: mgm:Mmc1_2325 dimethyladenosine transferase; COGs: COG0030 Dimethyladenosine transferase (rRNA methylation); SPTR: Q72GC7 Dimethyladenosine transferase; PFAM: Ribosomal RNA adenine dimethylase; TIGRFAM: dimethyladenosine transferase
YP_003506955.1	InterPro IPR004843:IPR006146; PFAM: metallophosphoesterase; PFAM: Calcineurin-like phosphoesterase
YP_003506956.1	KEGG: sec:SC0333 hypothetical protein; SPTR: A7VY45 Putative uncharacterized protein; COGs: COG4712 conserved hypothetical protein
YP_003506957.1	PFAM: ribosomal protein L10; SPTR: Q8VVE3 50S ribosomal protein L10; InterPro IPR001790; COGs: COG0244 Ribosomal protein L10; KEGG: dol:Dole_0700 ribosomal protein L10; PFAM: Ribosomal protein L10
YP_003506958.1	TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12; InterPro IPR013823:IPR000206; KEGG: mes:Meso_1820 50S ribosomal protein L7/L12; COGs: COG0222 Ribosomal protein L7/L12; SPTR: Q8VVE2 50S ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12 C-terminal domain; TIGRFAM: ribosomal protein L7/L12
YP_003506959.1	SPTR: A4BR75 Putative uncharacterized protein; COGs: COG5621 secreted hydrolase; KEGG: asa:ASA_2563 hypothetical protein; PFAM: Proteins of unknown function (DUF2006)
YP_003506960.1	TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; InterPro IPR001130:IPR015991; KEGG: pla:Plav_3114 TatD family hydrolase; COGs: COG0084 Mg-dependent DNase; SPTR: A6CAP8 Putative deoxyribonuclease yabD; PFAM: TatD related DNase; TIGRFAM: hydrolase, TatD family
YP_003506961.1	TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; InterPro IPR002524; KEGG: bra:BRADO4723 putative cation efflux family protein, CzcD-like; COGs: COG0053 Co/Zn/Cd cation transporter; SPTR: A6E3R4 Cation efflux transporter, CDF family protein; PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter
YP_003506962.1	TIGRFAM: ribosomal protein L1; PFAM: ribosomal protein L1; InterPro IPR002143:IPR005878; KEGG: bha:BH0120 50S ribosomal protein L1; COGs: COG0081 Ribosomal protein L1; SPTR: Q5SLP7 50S ribosomal protein L1; PFAM: Ribosomal protein L1p/L10e family; TIGRFAM: ribosomal protein L1, bacterial/chloroplast
YP_003506963.1	TIGRFAM: ribosomal protein L11; PFAM: ribosomal protein L11; SMART: ribosomal protein L11; InterPro IPR000911:IPR006519; KEGG: bba:Bd2991 50S ribosomal protein L11; COGs: COG0080 Ribosomal protein L11; SPTR: P36238 50S ribosomal protein L11; PFAM: Ribosomal protein L11, N-terminal domain; Ribosomal protein L11, RNA binding domain; TIGRFAM: 50S ribosomal protein L11
YP_003506964.1	TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain protein; KOW domain protein; SMART: NGN domain protein; KOW domain protein; InterPro IPR001062:IPR005824:IPR006645:IPR015869; KEGG: bsu:BSU01010 transcription antitermination protein NusG; COGs: COG0250 Transcription antiterminator; SPTR: P35872 Transcription antitermination protein nusG; PFAM: KOW motif; Transcription termination factor nusG; TIGRFAM: transcription termination/antitermination factor NusG
YP_003506965.1	TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; InterPro IPR001901:IPR005807; KEGG: dol:Dole_0696 preprotein translocase, SecE subunit; SPTR: P38383 Preprotein translocase subunit secE; PFAM: SecE/Sec61-gamma subunits of protein translocation complex; TIGRFAM: preprotein translocase, SecE subunit, bacterial
YP_003506966.1	TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; InterPro IPR001705; KEGG: dvm:DvMF_1448 ribosomal protein L33; SPTR: P35871 50S ribosomal protein L33; PFAM: Ribosomal protein L33; TIGRFAM: ribosomal protein L33, bacterial type
YP_003506967.1	TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain protein; elongation factor Tu domain 2 protein; InterProIPR000795:IPR004160:IPR004161:IPR005225:IPR 004541; KEGG: ngk:NGK_2415 putative translation elongation factor Tu; COGs: COG0050 GTPase - translation elongation factors; SPTR: Q01698 Elongation factor Tu; PFAM: Elongation factor Tu C-terminal domain; Elongation factor Tu domain 2; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation elongation factor TU
YP_003506968.1	PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; SPTR: Q5SLP1 Ribonuclease TTHA0252; InterPro IPR001279:IPR011108; COGs: COG1236 exonuclease of the beta-lactamase fold involved in RNA processing; KEGG: dde:Dde_1781 metallo-beta-lactamase family protein; PFAM: Metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase
YP_003506970.1	PRIAM: Leucyl aminopeptidase; PFAM: peptidase M17 leucyl aminopeptidase domain protein; InterPro IPR000819:IPR008283; KEGG: sus:Acid_1288 leucyl aminopeptidase; COGs: COG0260 Leucyl aminopeptidase; SPTR: O67868 Probable cytosol aminopeptidase; PFAM: Cytosol aminopeptidase family, N-terminal domain; Cytosol aminopeptidase family, catalytic domain
YP_003506971.1	PFAM: ferric-uptake regulator; SPTR: Q7A4T8 Peroxide-responsive repressor perR; InterPro IPR002481; COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; KEGG: bcy:Bcer98_0459 ferric uptake regulator family protein; PFAM: Ferric uptake regulator family
YP_003506974.1	KEGG: pcr:Pcryo_1083 inorganic diphosphatase
YP_003506975.1	TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); TGS domain protein; Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase SAD; InterProIPR002320:IPR002314:IPR004095:IPR004154:IPR 012947:IPR006195; KEGG: bha:BH3141 threonyl-tRNA synthetase 1; COGs: COG0441 Threonyl-tRNA synthetase; SPTR: P56881 Threonyl-tRNA synthetase; PFAM: Anticodon binding domain; TGS domain; tRNA synthetase class II core domain (G, H, P, S and T); Threonyl and Alanyl tRNA synthetase second additional domain; TIGRFAM: threonyl-tRNA synthetase
YP_003506976.1	PFAM: major facilitator superfamily MFS_1; InterPro IPR011701:IPR007114; KEGG: sus:Acid_2815 major facilitator transporter; SPTR: A3TLD4 Putative export protein; PFAM: Major Facilitator Superfamily
YP_003506977.1	PFAM: major facilitator superfamily MFS_1; InterPro IPR011701; KEGG: tgr:Tgr7_0494 major facilitator transporter; SPTR: A3XND4 Permease of the major facilitator superfamily protein; PFAM: Major Facilitator Superfamily
YP_003506979.1	TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; InterPro IPR013078:IPR004449; KEGG: gsu:GSU2562 phosphohistidine phosphatase SixA; COGs: COG2062 Phosphohistidine phosphatase SixA; SPTR: A8DJB6 Phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase family; TIGRFAM: phosphohistidine phosphatase SixA
YP_003506980.1	PFAM: Ppx/GppA phosphatase; metal-dependent phosphohydrolase HD sub domain; SPTR: A4A0I0 Ppx/GppA phosphatase; InterPro IPR003695:IPR006674:IPR013126; COGs: COG0248 Exopolyphosphatase; KEGG: gsu:GSU2559 exopolyphosphatase, putative; PFAM: HD domain; Ppx/GppA phosphatase family
YP_003506981.1	PRIAM: Polyphosphate kinase; PFAM: Polyphosphate kinase; InterPro IPR003414; KEGG: mes:Meso_1119 polyphosphate kinase; COGs: COG0855 Polyphosphate kinase; SPTR: Q46D80 Polyphosphate kinase; PFAM: Polyphosphate kinase
YP_003506982.1	PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593:IPR017871; KEGG: potA; spermidine/putrescine ABC transporter; COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; SPTR: A1S0G9 Spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter
YP_003506983.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A3SAR5 Probable ferric iron transport system permease protein; KEGG: oan:Oant_1464 binding-protein-dependent transport systems inner membrane component; COGs: COG1178 ABC-type Fe3+ transport system permease component; InterPro IPR000515; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003506984.1	PFAM: extracellular solute-binding protein family 1; SPTR: B7R0Q9 ABC transporter substrate-binding protein; InterPro IPR006059; COGs: COG1840 ABC-type Fe3+ transport system periplasmic component; KEGG: oan:Oant_1463 extracellular solute-binding protein family 1; PFAM: Bacterial extracellular solute-binding protein
YP_003506985.1	PFAM: glycosyl transferase family 2; SPTR: P39614 Uncharacterized glycosyltransferase ywdF; InterPro IPR001173; COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; KEGG: bsu:BSU37980 hypothetical protein; PFAM: Glycosyl transferase family 2
YP_003506986.1	TIGRFAM: stationary-phase survival protein SurE; PRIAM: 5'-nucleotidase; PFAM: Survival protein SurE; InterPro IPR002828; KEGG: gme:Gmet_1419 exopolyphosphatase / 5'-nucleotidase / 3'-nucleotidase; COGs: COG0496 acid phosphatase; SPTR: Q746M5 5'-nucleotidase surE 2; PFAM: Survival protein SurE; TIGRFAM: 5'/3'-nucleotidase SurE
YP_003506987.1	TIGRFAM: GTP-binding protein YchF; PFAM: Protein of unknown function DUF933; GTP-binding protein HSR1-related; InterPro IPR006073:IPR002917:IPR013029:IPR004396; KEGG: bha:BH4051 translation-associated GTPase; COGs: COG0012 GTPase probable translation factor; SPTR: A1HSK0 GTP-binding protein YchF; PFAM: Protein of unknown function (DUF933); GTPase of unknown function; TIGRFAM: GTP-binding protein YchF
YP_003506988.1	PFAM: SpoVT / AbrB like domain
YP_003506989.1	PFAM: ThiJ/PfpI domain protein; InterPro IPR002818; KEGG: mpo:Mpop_3518 ThiJ/PfpI domain protein; SPTR: A4A6A9 ThiJ/PfpI family protein; PFAM: DJ-1/PfpI family
YP_003506990.1	PFAM: peptidase S10 serine carboxypeptidase; SPTR: A3UGD0 Putative uncharacterized protein; InterPro IPR001563; COGs: COG2939 Carboxypeptidase C (cathepsin A); KEGG: peptidase S10 serine carboxypeptidase; PFAM: Serine carboxypeptidase
YP_003506991.1	SPTR: A6E943 Putative uncharacterized protein
YP_003506992.1	PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; peptidase S41; InterPro IPR001478:IPR005151; KEGG: dde:Dde_1437 carboxyl-terminal protease; COGs: COG0793 Periplasmic protease; SPTR: A3Z963 PDZ domain (Also known as DHR or GLGF):Tail specific protease; PFAM: PDZ domain (Also known as DHR or GLGF); Peptidase family S41; TIGRFAM: C-terminal peptidase (prc)
YP_003506993.1	PFAM: thioesterase superfamily protein; SPTR: Q97AV4 Putative uncharacterized protein TVG0710523; InterPro IPR006683; COGs: COG0824 thioesterase; KEGG: abo:ABO_0293 hypothetical protein; PFAM: Thioesterase superfamily; TIGRFAM: conserved hypothetical protein TIGR00051
YP_003506994.1	TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F; InterPro IPR013647:IPR001567:IPR011977; KEGG: bha:BH0871 oligoendopeptidase F; COGs: COG1164 Oligoendopeptidase F; SPTR: A8R8J7 Putative uncharacterized protein; PFAM: Oligopeptidase F; Peptidase family M3; TIGRFAM: oligoendopeptidase, pepF/M3 family
YP_003506997.1	KEGG: bha:BH3593 hypothetical protein; SPTR: A8CUJ3 Putative uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2089)
YP_003506999.1	SPTR: A3IAH0 Uncharacterized conserved protein, containing Zn finger; COGs: COG3877 conserved hypothetical protein; KEGG: scl:sce1452 hypothetical protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2089)
YP_003507000.1	PFAM: Enoyl-CoA hydratase/isomerase; SPTR: A6ECC8 Probable enoyl-CoA hydratase; InterPro IPR001753; COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; KEGG: aba:Acid345_1426 enoyl-CoA hydratase/isomerase; PFAM: Enoyl-CoA hydratase/isomerase family
YP_003507001.1	COGs: COG0290 Translation initiation factor 3 (IF-3); InterPro IPR001288; KEGG: rru:Rru_A3488 translation initiation factor 3; PFAM: initiation factor 3; SPTR: Q70YI5 Translation initiation factor IF-3; TIGRFAM: translation initiation factor IF-3; PFAM: Translation initiation factor IF-3, N-terminal domain; Translation initiation factor IF-3, C-terminal domain; TIGRFAM: translation initiation factor IF-3
YP_003507002.1	PFAM: UvrD/REP helicase; SPTR: A1HME8 ATP-dependent DNA helicase PcrA; InterPro IPR000212:IPR014016:IPR014017; COGs: COG0210 Superfamily I DNA and RNA helicase; KEGG: gur:Gura_4326 UvrD/REP helicase; PFAM: UvrD/REP helicase
YP_003507005.1	SPTR: A6CIG6 Putative uncharacterized protein; COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor type A (vWA) domain); KEGG: mxa:MXAN_6473 hypothetical protein; PFAM: Protein of unknown function DUF58
YP_003507006.1	PFAM: glycosyl transferase group 1; SPTR: A3WIR9 Membrane-associated protein; InterPro IPR001296; COGs: COG0438 Glycosyltransferase; KEGG: maq:Maqu_3009 glycosyl transferase, group 1; PFAM: Glycosyl transferases group 1
YP_003507007.1	PFAM: polysaccharide deacetylase; SPTR: A5KSU1 Polysaccharide deacetylase (Fragment); InterPro IPR002509; COGs: COG0726 xylanase/chitin deacetylase; KEGG: ade:Adeh_2417 polysaccharide deacetylase; PFAM: Polysaccharide deacetylase
YP_003507008.1	PFAM: glycosyl transferase family 2; SPTR: Q0W4Z6 Putative glycosyltransferase (Family 2); InterPro IPR001173; COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; KEGG: sfu:Sfum_3546 glycosyl transferase, family 2; PFAM: Glycosyl transferase family 2
YP_003507009.1	TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain protein; InterPro IPR001030:IPR000573:IPR006249; KEGG: mxa:MXAN_1363 aconitate hydratase; COGs: COG1048 Aconitase A; SPTR: A4A2D5 Aconitate hydratase (Fragment); PFAM: Aconitase C-terminal domain; Aconitase family (aconitate hydratase); TIGRFAM: aconitate hydratase 1
YP_003507010.1	InterPro IPR006121
YP_003507011.1	PFAM: Helix-turn-helix type 11 domain protein; regulatory protein MerR; SPTR: A7V694 Putative uncharacterized protein; InterPro IPR000551:IPR013196; COGs: COG2378 transcriptional regulator protein; KEGG: gme:Gmet_3086 transcriptional regulator, putative; PFAM: HTH domain
YP_003507013.1	SPTR: A0MN33 Putative uncharacterized protein
YP_003507015.1	SPTR: A1ZMP7 Putative ribonucleoprotein-related protein; InterPro IPR008858; KEGG: scl:sce2537 hypothetical protein; PFAM: TROVE domain
YP_003507016.1	KEGG: scl:sce2285 MerR family transcriptional regulator; SPTR: A6FSG1 Putative uncharacterized protein
YP_003507017.1	PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; InterPro IPR002035; KEGG: pca:Pcar_2631 von Willebrand factor type A domain-containing protein; COGs: COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain; SPTR: A6FSG0 Putative uncharacterized protein; PFAM: von Willebrand factor type A domain
YP_003507018.1	PFAM: helicase domain protein; SNF2-related protein; SMART: helicase domain protein; DEAD-like helicase; InterPro IPR000330:IPR001650:IPR014001:IPR014021; KEGG: mgm:Mmc1_2016 helicase domain protein; COGs: COG0553 Superfamily II DNA/RNA helicase SNF2 family; SPTR: A7CLX3 Helicase domain protein; PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain
YP_003507019.1	SPTR: A3IJZ4 Putative uncharacterized protein; COGs: COG4634 conserved hypothetical protein; KEGG: xfa:XF2029 hypothetical protein
YP_003507020.1	PFAM: protein of unknown function DUF433; SPTR: A3IJZ5 Putative uncharacterized protein; InterPro IPR007367; COGs: COG2442 conserved hypothetical protein; KEGG: mpo:Mpop_4279 protein of unknown function DUF433; PFAM: Protein of unknown function (DUF433)
YP_003507021.1	SPTR: A7CLX2 Putative type II DNA modification enzyme; InterPro IPR002296:IPR002052; KEGG: mgm:Mmc1_2017 putative type II DNA modification enzyme
YP_003507022.1	PFAM: protein of unknown function DUF86; SPTR: A7LZ68 Putative uncharacterized protein; InterPro IPR008201; COGs: COG2361 conserved hypothetical protein; KEGG: sun:SUN_0149 hypothetical protein; PFAM: Protein of unknown function DUF86
YP_003507023.1	PFAM: DNA polymerase beta domain protein region; SPTR: A7LXW4 Putative uncharacterized protein; InterPro IPR002934; COGs: COG1669 nucleotidyltransferase; KEGG: DNA polymerase beta domain protein region; PFAM: Nucleotidyltransferase domain
YP_003507024.1	InterPro IPR002035
YP_003507025.1	SPTR: A5ZGN8 Putative uncharacterized protein; InterPro IPR002052:IPR000217; KEGG: bce:BC3578 hypothetical protein
YP_003507026.1	KEGG: mgm:Mmc1_0996 chromosome segregation ATPases-like protein
YP_003507027.1	SPTR: A4WL06 ATP-dependent protease La; InterPro IPR014061; COGs: COG4930 ATP-dependent Lon-type protease; KEGG: ppd:Ppro_2283 ATP-dependent Lon-type protease; TIGRFAM: conserved hypothetical protein TIGR02688; conserved hypothetical protein
YP_003507028.1	SPTR: A3Z089 Putative DNA helicase; InterPro IPR014016; COGs: COG0210 Superfamily I DNA and RNA helicase; KEGG: sfu:Sfum_2859 UvrD/REP helicase; PFAM: UvrD/REP helicase
YP_003507029.1	PFAM: transposase IS4 family protein; InterPro IPR002559; KEGG: tdn:Suden_1713 transposase IS4; SPTR: A1ZSG8 Transposase, IS4; PFAM: Transposase DDE domain
YP_003507030.1	PRIAM: Exodeoxyribonuclease V; PFAM: UvrD/REP helicase; InterPro IPR000212:IPR014016:IPR014017; KEGG: ank:AnaeK_1341 UvrD/REP helicase; COGs: COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); SPTR: A3CVM7 UvrD/REP helicase; PFAM: UvrD/REP helicase
YP_003507031.1	KEGG: rec:RHECIAT_PC0000866 hypothetical protein
YP_003507032.1	SPTR: A3IHB3 Putative uncharacterized protein; COGs: COG3864 conserved hypothetical protein; KEGG: dde:Dde_0484 hypothetical protein; PFAM: Predicted metallopeptidase (DUF2201)
YP_003507033.1	PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SPTR: A7C239 Putative uncharacterized protein; InterPro IPR011703:IPR011704; COGs: COG0714 MoxR-like ATPase; KEGG: tgr:Tgr7_2286 hypothetical protein; PFAM: ATPase family associated with various cellular activities (AAA)
YP_003507034.1	PFAM: leucine rich repeat variant; InterPro IPR004830; KEGG: xau:Xaut_0919 leucine-rich repeat-containing protein; SPTR: A3KI47 Putative uncharacterized protein; PFAM: Leucine rich repeat variant
YP_003507035.1	TIGRFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase; PRIAM: , GTP cyclohydrolase II; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; InterPro IPR000422:IPR000926; KEGG: gsu:GSU1690 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II; COGs: COG0108 3 4-dihydroxy-2-butanone 4-phosphate synthase; SPTR: A0Q3H7 Riboflavin biosynthesis protein ribBA; PFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase
YP_003507036.1	TIGRFAM: riboflavin synthase, alpha subunit; PRIAM: Riboflavin synthase; PFAM: Lumazine-binding protein; InterPro IPR001783; KEGG: saz:Sama_1017 riboflavin synthase subunit alpha; COGs: COG0307 Riboflavin synthase alpha chain; SPTR: A3X983 Riboflavin synthase subunit alpha; PFAM: Lumazine binding domain; TIGRFAM: riboflavin synthase, alpha subunit
YP_003507037.1	PRIAM: Diaminohydroxyphosphoribosylaminopyrimidine deaminase., 5-amino-6-(5-phosphoribosylamino)uracil reductase; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; SPTR: A1HMW4 Riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; COGs: COG0117 Pyrimidine deaminase; InterProIPR002125:IPR002734:IPR016192:IPR011549:IPR 004794; KEGG: gme:Gmet_1624 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region; RibD C-terminal domain; TIGRFAM: riboflavin biosynthesis protein RibD; riboflavin-specific deaminase C-terminal domain
YP_003507038.1	TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PRIAM: Riboflavin synthase; PFAM: 67-dimethyl-8-ribityllumazine synthase; InterPro IPR002180; KEGG: esa:ESA_02887 riboflavin synthase subunit beta; COGs: COG0054 Riboflavin synthase beta-chain; SPTR: Q5SLF7 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase
YP_003507039.1	PFAM: Carboxymuconolactone decarboxylase; InterPro IPR003779; KEGG: gme:Gmet_2646 alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase family; TIGRFAM: alkylhydroperoxidase AhpD family core domain; uncharacterized peroxidase-related enzyme
YP_003507040.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; InterPro IPR000160; KEGG: diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); COGs: COG2199 FOG: GGDEF domain; SPTR: A1HSJ3 Diguanylate cyclase with PAS/PAC sensor; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_003507041.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; PAC repeat-containing protein; histidine kinase A domain protein; PAS domain containing protein; InterProIPR004358:IPR013655:IPR013656:IPR013767:IPR 003594:IPR003661:IPR001610:IPR000014:IPR000700:IPR005467; KEGG: mno:Mnod_0770 PAS/PAC sensor hybrid histidine kinase; COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; SPTR: A0YI13 Putative uncharacterized protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold; His Kinase A (phosphoacceptor) domain; TIGRFAM: PAS domain S-box
YP_003507042.1	PFAM: response regulator receiver; SMART: response regulator receiver; InterPro IPR001789; KEGG: dol:Dole_1977 response regulator receiver protein; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; SPTR: A3ZNB1 Putative uncharacterized protein; PFAM: Response regulator receiver domain
YP_003507043.1	KEGG: sml:Smlt4269 hypothetical protein; SPTR: A0AD73 Putative uncharacterized protein
YP_003507044.1	PFAM: protein of unknown function DUF1385; SPTR: A1HR87 Putative uncharacterized protein; InterPro IPR010787; COGs: COG3872 metal-dependent protein; KEGG: bha:BH1437 hypothetical protein; PFAM: Protein of unknown function (DUF1385)
YP_003507046.1	PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; Bacterio-opsin activator HTH domain protein; sigma-70 region 4 domain protein; SMART: response regulator receiver; regulatory protein LuxR; InterProIPR000792:IPR013249:IPR001789:IPR007050:IPR 007630; KEGG: sus:Acid_1272 two component LuxR family transcriptional regulator; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; SPTR: A3UEH3 DNA-binding response regulator; PFAM: Bacterial regulatory proteins, luxR family; Response regulator receiver domain
YP_003507047.1	PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; SPTR: A3UEH4 Putative uncharacterized protein; KEGG: sus:Acid_1273 integral membrane sensor signal transduction histidine kinase; COGs: COG4585 Signal transduction histidine kinase; InterPro IPR011712:IPR003594; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_003507048.1	PFAM: ABC-2 type transporter; InterPro IPR013525; KEGG: bba:Bd1727 ABC transporter, permease protein, putative; SPTR: A3UEH5 Putative uncharacterized protein; PFAM: ABC-2 type transporter
YP_003507049.1	InterPro IPR003439:IPR003593:IPR017871; PFAM: ABC transporter related; COGs: COG1131 ABC-type multidrug transport system ATPase component; SPTR: A3UEH6 ABC transporter, ATP-binding protein; KEGG: ccs:CCNA_01205 ABC transporter ATP-binding protein; SMART: AAA ATPase; PFAM: ABC transporter
YP_003507050.1	TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; Phosphomethylpyrimidine kinase type-1; InterPro IPR002139:IPR011611:IPR013749:IPR017583; KEGG: vpa:VPA0812 1-phosphofructokinase; COGs: COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB); SPTR: A6AY92 1-phosphofructokinase; PFAM: pfkB family carbohydrate kinase; TIGRFAM: 1-phosphofructokinase
YP_003507051.1	PFAM: carbohydrate kinase FGGY; SPTR: A1RYL5 Glycerol kinase; InterPro IPR000577; COGs: COG1070 Sugar (pentulose and hexulose) kinase; KEGG: scl:sce9296 xylulokinase; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain
YP_003507052.1	PFAM: ROK family protein; SPTR: A5Z748 Putative uncharacterized protein; InterPro IPR000600; COGs: COG1940 Transcriptional regulator/sugar kinase; KEGG: sme:SMc03817 putative sugar kinase protein; PFAM: ROK family
YP_003507053.1	PFAM: ROK family protein; SPTR: Q44406 Xylose repressor; InterPro IPR000600; COGs: COG1940 Transcriptional regulator/sugar kinase; KEGG: bha:BH2758 transcriptional repressor of the xylose operon; PFAM: ROK family
YP_003507054.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; SPTR: A6CWF4 ABC transporter, membrane spanning protein (Ribose); InterPro IPR001761; COGs: COG1879 ABC-type sugar transport system periplasmic component; KEGG: sugar ABC transporter ; K10439 ribose transport system substrate-binding protein; PFAM: Periplasmic binding proteins and sugar binding domain of the LacI family
YP_003507055.1	PFAM: inner-membrane translocator; SPTR: A6CZ96 Putative sugar ABC transporter (Permease); InterPro IPR001851:IPR000215; COGs: COG4158 ABC-type sugar transport system permease component; KEGG: rbsC; ABC transporter membrane spanning protein (ribose) ; K10440 ribose transport system permease protein; PFAM: Branched-chain amino acid transport system / permease component
YP_003507056.1	PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593:IPR017871; KEGG: mlo:mll3403 ABC-transport system ATP binding protein; COGs: COG1129 ABC-type sugar transport system ATPase component; SPTR: A1RZH8 ABC transporter related; PFAM: ABC transporter
YP_003507057.1	PFAM: phosphofructokinase; SPTR: Q72H98 6-phosphofructokinase; InterPro IPR000023:IPR015912; COGs: COG0205 6-phosphofructokinase; KEGG: aba:Acid345_3032 6-phosphofructokinase; PFAM: Phosphofructokinase
YP_003507058.1	TIGRFAM: ketose-bisphosphate aldolase; PRIAM: Tagatose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II; InterPro IPR000771; KEGG: bsu:BSU37120 fructose-bisphosphate aldolase; COGs: COG0191 Fructose/tagatose bisphosphate aldolase; SPTR: A1Z6B9 Fructose-bisphosphate aldolase; PFAM: Fructose-bisphosphate aldolase class-II; TIGRFAM: ketose-bisphosphate aldolases
YP_003507059.1	PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; SPTR: Q97U03 Uncharacterized aldolase SSO3226; InterPro IPR002915:IPR005479; COGs: COG1830 DhnA-type fructose-1 6-bisphosphate aldolase; KEGG: lch:Lcho_0886 deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DeoC/LacD family aldolase
YP_003507060.1	PFAM: PfkB domain protein; SPTR: A6CGL1 Putative sugar kinase; InterPro IPR011611; COGs: COG0524 Sugar kinase ribokinase family; KEGG: rsh:Rsph17029_1030 ribokinase-like domain-containing protein; PFAM: pfkB family carbohydrate kinase
YP_003507061.1	InterPro IPR010864; PFAM: protein of unknown function DUF1498; COGs: COG3822 ABC-type sugar transport system auxiliary component; KEGG: dde:Dde_2521 hypothetical protein; SPTR: A7CUQ3 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1498)
YP_003507063.1	PFAM: phospholipase/Carboxylesterase; SPTR: A3I6K9 Phospholipase/carboxylesterase family protein; InterPro IPR003140; COGs: COG0400 esterase; KEGG: mno:Mnod_5284 phospholipase/carboxylesterase; PFAM: Phospholipase/Carboxylesterase
YP_003507064.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; InterPro IPR004360; KEGG: met:M446_3093 glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Q5V050 Dioxgenase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
YP_003507065.1	TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; CBS domain containing protein; SMART: AAA ATPase; CBS domain containing protein; InterProIPR000644:IPR003439:IPR003593:IPR017871:IPR 005892; KEGG: dvm:DvMF_1045 glycine betaine/L-proline ABC transporter, ATPase subunit; COGs: COG4175 ABC-type proline/glycine betaine transport system ATPase component; SPTR: Q8U4S5 ATP-binding protein OtaA (Glycine betaine transporter, ATP-binding protein); PFAM: CBS domain pair; ABC transporter; TIGRFAM: glycine betaine/L-proline transport ATP binding subunit
YP_003507066.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A3LJ34 Putative uncharacterized protein; InterPro IPR000515; COGs: COG4176 ABC-type proline/glycine betaine transport system permease component; KEGG: bpa:BPP1741 putative binding-protein-dependent transport protein; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003507067.1	PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SPTR: A3LJ26 Putative uncharacterized protein; InterPro IPR007210; COGs: COG2113 ABC-type proline/glycine betaine transport systems periplasmic components; KEGG: pla:Plav_1066 substrate-binding region of ABC-type glycine betaine transport system; PFAM: Substrate binding domain of ABC-type glycine betaine transport system
YP_003507068.1	PFAM: Curli production assembly/transport component CsgG; SPTR: A4CEI5 Putative uncharacterized protein; InterPro IPR005534; COGs: COG1462 Uncharacterized protein involved in formation of curli polymers; KEGG: ccs:CCNA_01766 hypothetical protein; PFAM: Curli production assembly/transport component CsgG
YP_003507069.1	PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; InterPro IPR002035; KEGG: scl:sce0468 hypothetical protein; SPTR: A6GBY0 Putative uncharacterized protein; PFAM: von Willebrand factor type A domain
YP_003507070.1	PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; SPTR: A0YG93 Peptidase S8 and S53, subtilisin, kexin, sedolisin; InterPro IPR000209:IPR001952:IPR000399; COGs: COG1404 Subtilisin-like serine protease; KEGG: hch:HCH_05735 subtilisin-like serine protease; PFAM: Subtilase family
YP_003507071.1	PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; InterPro IPR002543:IPR003593; KEGG: noc:Noc_0347 cell division FtsK/SpoIIIE; COGs: COG1674 DNA segregation ATPase FtsK/SpoIIIE and related protein; SPTR: Q9RXB5 Uncharacterized ftsK-like protein DR_0400; PFAM: FtsK/SpoIIIE family; Ftsk gamma domain
YP_003507072.1	PFAM: outer membrane chaperone Skp (OmpH); InterPro IPR005632; KEGG: lpc:LPC_2838 outer membrane protein OmpH; PFAM: Outer membrane protein (OmpH-like)
YP_003507073.1	PFAM: outer membrane chaperone Skp (OmpH); InterPro IPR005632; KEGG: vco:VC0395_A1842 outer membrane protein OmpH; SPTR: A1ZP35 Outer membrane protein OmpH, putative; PFAM: Outer membrane protein (OmpH-like)
YP_003507075.1	PRIAM: Prephenate dehydratase; PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; InterPro IPR001086:IPR002912; KEGG: predicted protein; K04518 prephenate dehydratase; COGs: COG0077 Prephenate dehydratase; SPTR: A4RQP2 Predicted protein; PFAM: Prephenate dehydratase; ACT domain
YP_003507076.1	COGs: COG2348 Uncharacterized protein involved in methicillin resistance; InterPro IPR003447; KEGG: mno:Mnod_8162 methicillin resistance protein; SPTR: A0AD08 Putative uncharacterized protein; PFAM: Methicillin resistance protein; PFAM: FemAB family
YP_003507077.1	PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; InterPro IPR013520:IPR006055; KEGG: afw:Anae109_0814 exonuclease RNase T and DNA polymerase III; COGs: COG0847 DNA polymerase III epsilon subunit and related 3'-5' exonuclease; SPTR: A3EMR6 DNA polymerase III, epsilon subunit, putative; PFAM: Exonuclease
YP_003507078.1	PFAM: protein of unknown function DUF294 nucleotidyltransferase putative; CBS domain containing protein; cyclic nucleotide-binding; SMART: CBS domain containing protein; InterPro IPR000595:IPR000644:IPR005105; KEGG: afw:Anae109_0817 CBS domain-containing protein; COGs: COG2905 signal-transduction protein containing cAMP-binding and CBS domains; SPTR: A2V3Y0 Cyclic nucleotide-binding protein; PFAM: CBS domain pair; Cyclic nucleotide-binding domain; Putative nucleotidyltransferase DUF294; Putative nucleotidyltransferase substrate binding domain
YP_003507080.1	TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; InterPro IPR001734; KEGG: dde:Dde_0630 sodium:solute symporter family protein; COGs: COG4147 symporter; SPTR: A0YVI2 Na+/solute symporter; PFAM: Sodium:solute symporter family; TIGRFAM: SSS sodium solute transporter superfamily; probable sodium:solute symporter, VC_2705 subfamily
YP_003507081.1	SPTR: A0YVI1 Putative uncharacterized protein; COGs: COG4327 membrane protein; KEGG: mgm:Mmc1_1041 membrane protein; TIGRFAM: probable solute:sodium symporter small subunit
YP_003507082.1	PFAM: AMP-dependent synthetase and ligase; SPTR: A7I4C9 Acetate--CoA ligase; KEGG: aba:Acid345_3521 AMP-dependent synthetase and ligase; COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; InterPro IPR000873; PFAM: AMP-binding enzyme; TIGRFAM: acetate--CoA ligase
YP_003507083.1	PFAM: AMP-dependent synthetase and ligase; Transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR; InterPro IPR000873:IPR014757:IPR005471; KEGG: aba:Acid345_3521 AMP-dependent synthetase and ligase; COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; SPTR: A3CVB8 Acetyl-coenzyme A synthetase; PFAM: AMP-binding enzyme
YP_003507084.1	TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; InterPro IPR000873:IPR011904; KEGG: aba:Acid345_3520 acetyl-coenzyme A synthetase; COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; SPTR: Q5SIW6 Acetyl-coenzyme A synthetase; PFAM: AMP-binding enzyme; TIGRFAM: acetoacetyl-CoA synthase; acetate--CoA ligase
YP_003507085.1	KEGG: ade:Adeh_0244 LigA; SPTR: P0C348 Peptide chain release factor 2; PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 2
YP_003507086.1	TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); InterPro IPR001986:IPR005750; KEGG: rpi:Rpic_3231 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; COGs: COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase; SPTR: Q5SM03 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase
YP_003507088.1	TIGRFAM: RNA methylase, NOL1/NOP2/sun family; PFAM: Fmu (Sun) domain protein; InterPro IPR001678:IPR011023; KEGG: sbc:SbBS512_E2103 ribosomal RNA small subunit methyltransferase F; COGs: COG0144 tRNA and rRNA cytosine-C5-methylase; SPTR: A1HRN9 Putative RNA methylase, NOL1/NOP2/sun family; PFAM: NOL1/NOP2/sun family; TIGRFAM: NOL1/NOP2/sun family putative RNA methylase
YP_003507089.1	TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; InterPro IPR008278:IPR004568:IPR002582; KEGG: azo:azo1646 holo-[acyl-carrier-protein] synthase; COGs: COG0736 Phosphopantetheinyl transferase (holo-ACP synthase); SPTR: Q5SII1 Holo-[acyl-carrier-protein] synthase; PFAM: 4'-phosphopantetheinyl transferase superfamily; TIGRFAM: phosphopantethiene--protein transferase domain; holo-[acyl-carrier-protein] synthase
YP_003507091.1	KEGG: ecr:ECIAI1_0542 bacteriophage N4 receptor, inner membrane subunit; SPTR: P0AFA5 Bacteriophage N4 adsorption protein B
YP_003507092.1	SPTR: A7C9T0 Putative uncharacterized protein; COGs: COG5298 conserved hypothetical protein; KEGG: rso:RS00391 hypothetical protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2334)
YP_003507093.1	SPTR: Q2FSX7 Putative uncharacterized protein; COGs: COG4124 Beta-mannanase; KEGG: scl:sce4867 cellulase
YP_003507094.1	PFAM: 6-phosphogluconate dehydrogenase NAD-binding; NADP oxidoreductase coenzyme F420-dependent; SPTR: A6EWE5 6-phosphogluconate dehydrogenase, NAD-binding protein; InterPro IPR004455:IPR006115; COGs: COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenase; KEGG: aci:ACIAD2316 putative 3-hydroxyisobutyrate dehydrogenase; PFAM: NAD binding domain of 6-phosphogluconate dehydrogenase
YP_003507095.1	KEGG: Os02g0741200; hypothetical protein ; K00430 peroxidase; SPTR: Q6Z7S2 Os02g0741200 protein
YP_003507096.1	PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SPTR: A4KH24 Transcriptional regulatory protein moxR1; InterPro IPR011703:IPR011704; COGs: COG0714 MoxR-like ATPase; KEGG: pna:Pnap_3245 ATPase associated with various cellular activities, AAA_3; PFAM: ATPase family associated with various cellular activities (AAA)
YP_003507097.1	PFAM: protein of unknown function DUF58; SPTR: A6C9I5 Putative uncharacterized protein; InterPro IPR002881; COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor type A (vWA) domain); KEGG: pol:Bpro_3892 protein of unknown function DUF58; PFAM: Protein of unknown function DUF58
YP_003507098.1	PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; InterPro IPR002035; KEGG: azo:azo2860 hypothetical protein; SPTR: A1KIS1 UPF0353 protein BCG_1543; PFAM: von Willebrand factor type A domain
YP_003507099.1	PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; InterPro IPR002035; KEGG: cti:RALTA_B0837 conserved hypothetical protein, Von Willebrand factor type A domain (vwa), putative membrane protein; SPTR: A1T8Q8 UPF0353 protein Mvan_2751; PFAM: von Willebrand factor type A domain
YP_003507100.1	PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; InterPro IPR002035; KEGG: azo:azo2864 hypothetical protein; SPTR: A1UFT9 UPF0353 protein Mkms_2500; PFAM: von Willebrand factor type A domain
YP_003507101.1	PFAM: peptidase S16 lon domain protein; SMART: peptidase S16 lon domain protein; InterPro IPR003111; KEGG: scl:sce9299 putative ATP-dependent protease; COGs: COG2802 Uncharacterized protein similar to the N-terminal domain of Lon protease; SPTR: A3IYF2 Peptidase S16, lon; PFAM: ATP-dependent protease La (LON) domain
YP_003507102.1	SPTR: A6CP21 Putative uncharacterized protein; COGs: COG5496 thioesterase; KEGG: gbm:Gbem_3982 hypothetical protein
YP_003507103.1	PRIAM: Phenylacetate--CoA ligase; COGs: COG1541 Coenzyme F390 synthetase; KEGG: glo:Glov_1858 phenylacetate--CoA ligase; SPTR: A6EQ43 Phenylacetyl-CoA ligase; PFAM: AMP-binding enzyme; TIGRFAM: phenylacetate-CoA ligase
YP_003507104.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; SPTR: A2U591 Short-chain dehydrogenase/reductase SDR; InterProIPR002347:IPR002424:IPR002198:IPR013968:IPR 001509; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); KEGG: acr:Acry_0618 short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase
YP_003507105.1	TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; InterPro IPR002155; KEGG: bpa:BPP2569 beta-ketoadipyl CoA thiolase; COGs: COG0183 Acetyl-CoA acetyltransferase; SPTR: A6CP15 Acetyl-CoA acetyltransferase; PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases; beta-ketoadipyl CoA thiolase
YP_003507106.1	PFAM: thioesterase superfamily protein; SPTR: O28020 UPF0152 protein AF_2264; TIGRFAM: phenylacetic acid degradation protein PaaD; COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR006683:IPR003736:IPR011973; KEGG: dol:Dole_0386 thioesterase superfamily protein; PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1; phenylacetic acid degradation protein PaaD
YP_003507107.1	PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593:IPR017871; KEGG: tmz:Tmz1t_1520 ABC transporter related; COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; SPTR: A2VTY1 ABC transporter; PFAM: ABC transporter
YP_003507108.1	PFAM: ABC transporter related; inner-membrane translocator; SMART: AAA ATPase; InterPro IPR003439:IPR001851:IPR003593; KEGG: azo:azo2502 branched-chain amino acid ABC transporter; COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; SPTR: A3RUZ1 LivG; PFAM: ABC transporter; Branched-chain amino acid transport system / permease component
YP_003507109.1	PFAM: inner-membrane translocator; SPTR: A3RUZ2 LivH; InterPro IPR001851; COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; KEGG: bpt:Bpet1715 branched-chain amino acid transport system permease protein LivH; PFAM: Branched-chain amino acid transport system / permease component
YP_003507110.1	PFAM: Extracellular ligand-binding receptor; SPTR: A2VTX8 Extracellular ligand-binding receptor; InterPro IPR000709:IPR001828; COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; KEGG: azo:azo0311 ABC transporter substrate-binding protein; PFAM: Receptor family ligand binding region
YP_003507111.1	PRIAM: 3-hydroxybutyryl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; InterPro IPR006176:IPR006108:IPR006180; KEGG: bmj:BMULJ_04380 3-hydroxybutyryl-CoA dehydrogenase; COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; SPTR: A2WF96 3-hydroxyacyl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
YP_003507112.1	TIGRFAM: 3,4-dihydroxyphenylacetate 2,3-dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; InterPro IPR004360:IPR000486:IPR011981; KEGG: sil:SPO3688 extradiol ring-cleavage dioxygenase family protein; SPTR: A0NXR6 Extradiol ring-cleavage dioxygenase:Glyoxalase/Bleomycin resistance protein/dioxygenase domain:Glyoxalase I; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: 3,4-dihydroxyphenylacetate 2,3-dioxygenase
YP_003507113.1	PFAM: flavin reductase domain protein FMN-binding; SPTR: A8MBA5 Flavin reductase domain protein FMN-binding; InterPro IPR002563; COGs: COG1853 Conserved protein/domain typically associated with flavoprotein oxygenase DIM6/NTAB family; KEGG: rpb:RPB_1003 flavin reductase-like, FMN-binding; PFAM: Flavin reductase like domain
YP_003507114.1	TIGRFAM: 4-hydroxyphenylacetate 3-monooxygenase, oxygenase subunit; PRIAM: Vinylacetyl-CoA Delta-isomerase; PFAM: 4-hydroxyphenylacetate 3-hydroxylase; InterPro IPR004925:IPR012687; KEGG: bcy:Bcer98_0966 4-hydroxyphenylacetate 3-monooxygenase, oxygenase subunit; COGs: COG2368 Aromatic ring hydroxylase; SPTR: A3IG07 4-hydroxyphenylacetate-3-hydroxylase; PFAM: 4-hydroxyphenylacetate 3-hydroxylase family; TIGRFAM: 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component
YP_003507115.1	TIGRFAM: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; PRIAM: Betaine-aldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; InterPro IPR015590:IPR016160:IPR011985; KEGG: rpb:RPB_1706 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; COGs: COG1012 NAD-dependent aldehyde dehydrogenase; SPTR: A4ESD5 5-carboxy-2-hydroxymuconate semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase family; TIGRFAM: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
YP_003507116.1	TIGRFAM: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase,HpaG2 subunit; PRIAM: 5-carboxymethyl-2-hydroxymuconate Delta-isomerase; PFAM: fumarylacetoacetate (FAA) hydrolase; InterPro IPR002529:IPR012684; KEGG: mmw:Mmwyl1_3177 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase,HpaG2 subunit; COGs: COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase (catechol pathway); SPTR: A6CW58 Putative uncharacterized protein; PFAM: Fumarylacetoacetate (FAA) hydrolase family; TIGRFAM: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit
YP_003507117.1	TIGRFAM: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; InterPro IPR002220:IPR012691:IPR005263; KEGG: bcy:Bcer98_0964 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; COGs: COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; SPTR: Q72K27 Dihydrodipicolinate synthase; PFAM: Dihydrodipicolinate synthetase family; TIGRFAM: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; dihydrodipicolinate synthase
YP_003507118.1	TIGRFAM: homoprotocatechuate degradation operon regulator, HpaR; PFAM: regulatory protein MarR; InterPro IPR000835:IPR012712; SPTR: A2VZ95 Regulatory protein, MarR; KEGG: rlt:Rleg2_4459 transcriptional regulator, MarR family; SMART: regulatory protein MarR; PFAM: MarR family; TIGRFAM: homoprotocatechuate degradation operon regulator, HpaR
YP_003507119.1	PFAM: GCN5-related N-acetyltransferase; SPTR: A6CJF0 Putative uncharacterized protein; InterPro IPR000182; COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; KEGG: bcz:BCZK2658 acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_003507120.1	PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593; KEGG: bpt:Bpet0688 ABC transporter ATP-binding protein; COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; SPTR: A1HUG2 ABC transporter related; PFAM: ABC transporter
YP_003507121.1	PFAM: Fe-S metabolism associated SufE; SPTR: P67124 Uncharacterized sufE-like protein Mb3312; InterPro IPR003808; COGs: COG2166 SufE protein probably involved in Fe-S center assembly; KEGG: Os09g0270900; hypothetical protein; PFAM: Fe-S metabolism associated domain
YP_003507123.1	KEGG: hypothetical protein
YP_003507124.1	TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 region 4 domain protein; InterProIPR000943:IPR007627:IPR007624:IPR009042:IPR 007630:IPR005479:IPR012760:IPR014284; KEGG: hne:HNE_2888 RNA polymerase sigma factor RpoD; COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32); SPTR: A6NVX3 RNA polymerase sigma factor; PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; Sigma-70 factor, region 1.2; TIGRFAM: RNA polymerase sigma factor RpoD, C-terminal domain; RNA polymerase sigma factor, sigma-70 family
YP_003507125.1	PFAM: methyltransferase small; SPTR: A6FP18 Methyltransferase small; InterPro IPR007848:IPR001737:IPR002052; COGs: COG2813 16S RNA G1207 methylase RsmC; KEGG: mch:Mchl_2551 methyltransferase small; PFAM: Methyltransferase small domain
YP_003507126.1	PFAM: peptidase M22 glycoprotease; SPTR: A3K405 Putative uncharacterized protein; InterPro IPR000905; COGs: COG1214 Inactive homolog of metal-dependent protease putative molecular chaperone; KEGG: mfa:Mfla_0412 peptidase M22, glycoprotease; PFAM: Glycoprotease family
YP_003507127.1	TIGRFAM: pyrroline-5-carboxylate reductase; PRIAM: Pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; InterPro IPR004455:IPR000304; KEGG: afw:Anae109_1387 pyrroline-5-carboxylate reductase; COGs: COG0345 Pyrroline-5-carboxylate reductase; SPTR: P54893 Pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; TIGRFAM: pyrroline-5-carboxylate reductase
YP_003507128.1	KEGG: ank:AnaeK_2223 hypothetical protein
YP_003507129.1	PFAM: protein of unknown function DUF355; SPTR: A5XJZ4 Putative uncharacterized protein; InterPro IPR007153; COGs: COG1839 conserved hypothetical protein; KEGG: bph:Bphy_6435 hypothetical protein; PFAM: Adenosine specific kinase
YP_003507130.1	PRIAM: Peroxiredoxin; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; InterPro IPR000866:IPR013740; KEGG: nis:NIS_1538 peroxiredoxin family protein; COGs: COG1225 Peroxiredoxin; SPTR: A6DL69 AhpC/TSA family protein; PFAM: AhpC/TSA family
YP_003507131.1	TIGRFAM: ribose 5-phosphate isomerase; PRIAM: Ribose-5-phosphate isomerase; PFAM: Ribose 5-phosphate isomerase; InterPro IPR004788; KEGG: predicted protein; COGs: COG0120 Ribose 5-phosphate isomerase; SPTR: Q72J47 Ribose-5-phosphate isomerase A; PFAM: Ribose 5-phosphate isomerase A (phosphoriboisomerase A); TIGRFAM: ribose 5-phosphate isomerase
YP_003507132.1	TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase, beta subunit; PFAM: tRNA synthetase class I (M); t-RNA-binding domain protein; SPTR: Q9RUF3 Methionyl-tRNA synthetase; KEGG: sat:SYN_00558 methionyl-tRNA synthetase; COGs: COG0143 Methionyl-tRNA synthetase; InterProIPR014758:IPR015413:IPR002547:IPR004495:IPR 002304; PFAM: tRNA synthetases class I (M); Putative tRNA binding domain; TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase C-terminal region/beta chain
YP_003507133.1	TIGRFAM: chorismate mutase; PFAM: Chorismate mutase of the AroH class; InterPro IPR008243; KEGG: ftl:FTL_0328 chorismate mutase; COGs: COG4401 Chorismate mutase; SPTR: A4A121 Chorismate mutase; PFAM: Chorismate mutase type I; TIGRFAM: monofunctional chorismate mutase, gram positive type, clade 1
YP_003507134.1	TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; InterPro IPR002150; KEGG: 50S ribosomal protein L31; COGs: COG0254 Ribosomal protein L31; SPTR: Q1J0V5 50S ribosomal protein L31; PFAM: Ribosomal protein L31; TIGRFAM: ribosomal protein L31
YP_003507135.1	PRIAM: Thymidine kinase; PFAM: thymidine kinase; InterPro IPR001267; KEGG: bat:BAS5179 thymidine kinase; COGs: COG1435 Thymidine kinase; SPTR: Q9RSY5 Thymidine kinase; PFAM: Thymidine kinase
YP_003507136.1	PFAM: heat shock protein Hsp20; SPTR: Q4PLA7 Alfa-crystallin small heat shock protein (Heat shock protein 20, putative); InterPro IPR002068; COGs: COG0071 Molecular chaperone (small heat shock protein); KEGG: noc:Noc_2730 heat shock protein HSP20; PFAM: Hsp20/alpha crystallin family
YP_003507137.1	TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PRIAM: tRNA isopentenyltransferase; PFAM: tRNA isopentenyltransferase; InterPro IPR002627; KEGG: gur:Gura_1771 tRNA delta(2)-isopentenylpyrophosphate transferase; COGs: COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase; SPTR: Q72L59 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: IPP transferase; TIGRFAM: tRNA isopentenyltransferase (miaA)
YP_003507138.1	TIGRFAM: apurinic endonuclease Apn1; PRIAM: Deoxyribonuclease IV (phage-T(4)-induced); PFAM: Xylose isomerase domain protein TIM barrel; InterPro IPR012307:IPR001719; SPTR: Q72KH8 Probable endonuclease 4; KEGG: dde:Dde_2402 endonuclease IV; COGs: COG0648 Endonuclease IV; SMART: AP endonuclease family 2; PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: apurinic endonuclease (APN1)
YP_003507139.1	TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; InterPro IPR005132:IPR002482:IPR012997; KEGG: bph:Bphy_4319 rare lipoprotein A; COGs: COG0797 Lipoprotein; SPTR: A0YQB9 Putative uncharacterized protein; PFAM: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; LysM domain; TIGRFAM: rare lipoprotein A
YP_003507140.1	PFAM: peptidase M24; creatinase; SPTR: A6CTL8 Xaa-Pro dipeptidase; InterPro IPR000587:IPR000994:IPR001131; COGs: COG0006 Xaa-Pro aminopeptidase; KEGG: bcb:BCB4264_A4308 X-Pro dipeptidase; PFAM: Creatinase/Prolidase N-terminal domain; metallopeptidase family M24
YP_003507142.1	PFAM: aminoacyl-tRNA synthetase class Ia; tRNA synthetase valyl/leucyl anticodon-binding; tRNA synthetase class I (M); SPTR: Q9RUP8 Isoleucyl-tRNA synthetase; TIGRFAM: isoleucyl-tRNA synthetase; COGs: COG0060 Isoleucyl-tRNA synthetase; InterProIPR015905:IPR015413:IPR013155:IPR002300:IPR 002301; KEGG: bcr:BCAH187_A2323 isoleucyl-tRNA synthetase; PFAM: Anticodon-binding domain; tRNA synthetases class I (I, L, M and V); TIGRFAM: isoleucyl-tRNA synthetase
YP_003507143.1	TIGRFAM: transaldolase; PRIAM: Transaldolase; PFAM: Transaldolase; InterPro IPR001585:IPR004731; KEGG: bcu:BCAH820_0727 putative transaldolase; COGs: COG0176 Transaldolase; SPTR: Q6HNE4 Probable transaldolase; PFAM: Transaldolase; TIGRFAM: transaldolase, putative, TalC family
YP_003507144.1	TIGRFAM: transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; Rho termination factor RNA-binding; SMART: AAA ATPase; InterPro IPR000194:IPR011113:IPR003593:IPR004665; KEGG: bha:BH3781 transcription termination factor Rho; COGs: COG1158 Transcription termination factor; SPTR: P52153 Transcription termination factor rho; PFAM: Rho termination factor, RNA-binding domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: transcription termination factor Rho
YP_003507145.1	PFAM: Peptidase M23; Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; InterPro IPR016047:IPR002482; KEGG: hypothetical protein; COGs: COG0739 Membrane protein related to metalloendopeptidase; SPTR: A1HRW7 Peptidase M23B; PFAM: Peptidase family M23; LysM domain
YP_003507146.1	KEGG: bsu:BSU37530 hypothetical protein; SPTR: P70995 Putative zinc metalloprotease ywhC
YP_003507147.1	PFAM: peptidase M50; SPTR: A1HTN8 Peptidase M50; InterPro IPR008915; COGs: COG1994 Zn-dependent protease; KEGG: bce:BC5377 membrane metalloprotease; PFAM: Peptidase family M50
YP_003507148.1	TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; InterPro IPR005810:IPR005811:IPR003781; KEGG: sus:Acid_3377 succinyl-CoA synthetase (ADP-forming) alpha subunit; COGs: COG0074 Succinyl-CoA synthetase alpha subunit; SPTR: P09143 Succinyl-CoA ligase [ADP-forming] subunit alpha; PFAM: CoA-ligase; CoA binding domain; TIGRFAM: succinyl-CoA synthetase, alpha subunit
YP_003507149.1	TIGRFAM: succinyl-CoA synthetase, beta subunit; PRIAM: Succinate--CoA ligase (ADP-forming); PFAM: ATP-grasp domain protein; ATP-citrate lyase/succinyl-CoA ligase; InterProIPR005811:IPR013650:IPR011761:IPR017866:IPR 005809; KEGG: har:HEAR0343 succinyl-CoA synthetase, beta subunit; COGs: COG0045 Succinyl-CoA synthetase beta subunit; SPTR: P25126 Succinyl-CoA ligase [ADP-forming] subunit beta; PFAM: CoA-ligase; ATP-grasp domain; TIGRFAM: succinyl-CoA synthetase, beta subunit
YP_003507150.1	KEGG: transmembrane protein; SPTR: Q55D62 Transmembrane protein; PFAM: G8 domain; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
YP_003507153.1	PFAM: Protein of unknown function methylase putative; SPTR: A7VUD7 Putative uncharacterized protein; InterPro IPR016065; COGs: COG0742 N6-adenine-specific methylase; KEGG: ppd:Ppro_2191 putative methyltransferase; PFAM: Conserved hypothetical protein 95; TIGRFAM: RNA methyltransferase, RsmD family
YP_003507154.1	TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; PRIAM: Pantetheine-phosphate adenylyltransferase; PFAM: cytidylyltransferase; InterPro IPR001980:IPR004820:IPR004821; KEGG: bha:BH2589 lipopolysaccharide core biosynthesis; COGs: COG0669 Phosphopantetheine adenylyltransferase; SPTR: Q5SJS9 Phosphopantetheine adenylyltransferase; PFAM: Cytidylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase, bacterial; cytidyltransferase-related domain
YP_003507155.1	PFAM: Aldehyde Dehydrogenase; SPTR: Q8TM10 Aldehyde dehydrogenase (NAD+); InterPro IPR015590:IPR016160:IPR002345; COGs: COG1012 NAD-dependent aldehyde dehydrogenase; KEGG: aba:Acid345_1459 aldehyde dehydrogenase (NAD+); PFAM: Aldehyde dehydrogenase family
YP_003507156.1	PFAM: VWA containing CoxE family protein; SPTR: A3XDJ3 Carbon monoxide dehydrogenase E protein; InterPro IPR008912; COGs: COG3552 Protein containing von Willebrand factor type A (vWA) domain; KEGG: aeh:Mlg_1566 VWA containing CoxE family protein; PFAM: VWA domain containing CoxE-like protein
YP_003507157.1	PFAM: ATPase associated with various cellular activities AAA_5; ATPase associated with various cellular activities AAA_3; SMART: AAA ATPase; InterPro IPR011703:IPR011704:IPR003593; KEGG: azc:AZC_2935 AAA ATPase; COGs: COG0714 MoxR-like ATPase; SPTR: A4EV49 AAA_5 ATPase; PFAM: ATPase family associated with various cellular activities (AAA)
YP_003507158.1	PFAM: protein of unknown function DUF182; YHS domain protein; SPTR: A0NSQ3 Putative uncharacterized protein; InterPro IPR003777:IPR007029; COGs: COG1975 Xanthine and CO dehydrogenase maturation factor XdhC/CoxF family; KEGG: bxe:Bxe_C0035 sulfurylase large subunit, molybdopterin cytosine dinucleotide biosynthesis / sulfurylase small subunit, molybdopterin cytosine dinucleotide biosynthesis; PFAM: YHS domain; XdhC and CoxI family
YP_003507159.1	PFAM: carbon monoxide dehydrogenase subunit G; SPTR: Q9Y9R3 CoxG homolog; InterPro IPR010419; COGs: COG3427 conserved hypothetical protein; KEGG: mes:Meso_0006 carbon monoxide dehydrogenase subunit G; PFAM: Carbon monoxide dehydrogenase subunit G (CoxG)
YP_003507160.1	TIGRFAM: carbon-monoxide dehydrogenase, large subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; InterPro IPR008274:IPR000674:IPR012780; KEGG: bbt:BBta_1749 carbon monoxide dehydrogenase, large subunit apoprotein; COGs: COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL/CutL homologs; SPTR: A0NSQ6 Carbon monoxide dehydrogenase, large subunit; PFAM: Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding domain; TIGRFAM: carbon-monoxide dehydrogenase, large subunit
YP_003507161.1	PFAM: [2Fe-2S]-binding domain protein; ferredoxin; SPTR: Q97W14 Carbon monoxide dehydrogenase, small chain (CutC-1); InterPro IPR001041:IPR002888; COGs: COG2080 Aerobic-type carbon monoxide dehydrogenase small subunit CoxS/CutS homologs; KEGG: jan:Jann_2096 carbon monoxide dehydrogenase, small subunit; PFAM: [2Fe-2S] binding domain; 2Fe-2S iron-sulfur cluster binding domain
YP_003507162.1	PRIAM: Carbon-monoxide dehydrogenase (acceptor); PFAM: molybdopterin dehydrogenase FAD-binding; CO dehydrogenase flavoprotein domain protein; InterPro IPR005107:IPR002346; KEGG: bxe:Bxe_A2144 carbon monoxide dehydrogenase, medium subunit; COGs: COG1319 Aerobic-type carbon monoxide dehydrogenase middle subunit CoxM/CutM homologs; SPTR: P19914 Carbon monoxide dehydrogenase medium chain; PFAM: FAD binding domain in molybdopterin dehydrogenase; CO dehydrogenase flavoprotein C-terminal domain
YP_003507163.1	SPTR: A3WX74 Molybdopterin binding protein; COGs: COG2068 Uncharacterized MobA-related protein; KEGG: mlo:mlr0093 hypothetical protein
YP_003507164.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; TPR repeat-containing protein; metal-dependent phosphohydrolase HD sub domain; Tetratricopeptide TPR_2 repeat protein; SMART: GGDEF domain containing protein; metal-dependent phosphohydrolase HD region; Tetratricopeptide domain protein; InterProIPR001440:IPR000160:IPR006674:IPR013105:IPR 003607:IPR013026; KEGG: azo:azo2449 putative two component response regulator; COGs: COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain; SPTR: A5ZXV6 Putative uncharacterized protein; PFAM: Tetratricopeptide repeat; GGDEF domain; HD domain; TIGRFAM: uncharacterized domain HDIG; diguanylate cyclase (GGDEF) domain
YP_003507165.1	PFAM: FAD dependent oxidoreductase; SPTR: A8DJI4 FAD dependent oxidoreductase; InterPro IPR006076; COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); KEGG: sus:Acid_4932 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase
YP_003507166.1	TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; InterPro IPR001706; KEGG: aba:Acid345_0714 LSU ribosomal protein L35P; SPTR: P80341 50S ribosomal protein L35; PFAM: Ribosomal protein L35; TIGRFAM: ribosomal protein L35
YP_003507167.1	TIGRFAM: ribosomal protein L20; PFAM: ribosomal protein L20; InterPro IPR005812:IPR005813; KEGG: nis:NIS_0111 50S ribosomal protein L20; COGs: COG0292 Ribosomal protein L20; SPTR: P60491 50S ribosomal protein L20; PFAM: Ribosomal protein L20; TIGRFAM: ribosomal protein L20
YP_003507168.1	TIGRFAM: amidase, hydantoinase/carbamoylase family; PRIAM: N-carbamoyl-L-amino-acid hydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; InterPro IPR011650:IPR002933:IPR010158; KEGG: sus:Acid_0364 amidase; COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; SPTR: A9RUJ0 Predicted protein; PFAM: Peptidase family M20/M25/M40; TIGRFAM: amidase, hydantoinase/carbamoylase family
YP_003507169.1	PFAM: Cupin 2 conserved barrel domain protein; protein of unknown function DUF861 cupin_3; SPTR: B4FKZ3 Putative uncharacterized protein; InterPro IPR013096:IPR008579; COGs: COG3257 Uncharacterized protein possibly involved in glyoxylate utilization; KEGG: sus:Acid_0363 hypothetical protein; PFAM: Cupin domain; Protein of unknown function (DUF861); TIGRFAM: putative allantoin catabolism protein
YP_003507170.1	TIGRFAM: allantoinase; PFAM: amidohydrolase; Amidohydrolase 3; InterPro IPR006680:IPR013108:IPR002195:IPR017593; KEGG: sus:Acid_0362 allantoinase; COGs: COG0044 Dihydroorotase and related cyclic amidohydrolase; SPTR: Q02C42 Allantoinase; PFAM: Amidohydrolase family; TIGRFAM: allantoinase; dihydroorotase, multifunctional complex type
YP_003507171.1	TIGRFAM: amidase, hydantoinase/carbamoylase family; PRIAM: Allantoate deiminase; PFAM: peptidase M20; peptidase dimerisation domain protein; InterPro IPR011650:IPR002933:IPR001261:IPR010158; KEGG: sus:Acid_0361 allantoate amidohydrolase; COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; SPTR: A6BMQ3 Putative amino acid hydrolase; PFAM: Peptidase family M20/M25/M40; TIGRFAM: amidase, hydantoinase/carbamoylase family
YP_003507172.1	TIGRFAM: hydroxyisourate hydrolase; PFAM: Transthyretin; InterPro IPR000895:IPR014306; KEGG: xau:Xaut_3291 hydroxyisourate hydrolase; COGs: COG2351 Transthyretin-like protein; SPTR: Q8G228 Putative transthyretin-like protein BR0508; PFAM: HIUase/Transthyretin family; TIGRFAM: hydroxyisourate hydrolase
YP_003507173.1	PFAM: protein of unknown function DUF989; SPTR: A3L7N7 Putative uncharacterized protein; InterPro IPR010389:IPR009056; COGs: COG3748 membrane protein; KEGG: pag:PLES_38971 hypothetical protein; PFAM: Protein of unknown function (DUF989)
YP_003507174.1	TIGRFAM: OHCU decarboxylase; SPTR: A7CLP0 Putative uncharacterized protein; InterPro IPR017580; COGs: COG3195 conserved hypothetical protein; KEGG: sus:Acid_0358 hypothetical protein; PFAM: OHCU decarboxylase; TIGRFAM: OHCU decarboxylase
YP_003507175.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A3W106 Putative uncharacterized protein; InterPro IPR000515; COGs: COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system permease component; KEGG: azc:AZC_0024 putative ABC transporter permease protein; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003507176.1	PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593:IPR017871; KEGG: rme:Rmet_0393 ABC transporter-related protein; COGs: COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component; SPTR: A3SZ58 Putative uncharacterized protein; PFAM: ABC transporter
YP_003507177.1	PFAM: NMT1/THI5 like domain protein; SPTR: A4BBB4 ABC transporter, periplasmic substrate binding protein; InterPro IPR015168; COGs: COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components; KEGG: azo:azo3512 putative periplasmic-binding protein; PFAM: NMT1/THI5 like
YP_003507178.1	TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; InterPro IPR005814:IPR002052:IPR004639; KEGG: scl:sce9167 glutamate-1-semialdehyde 2,1-aminomutase; COGs: COG0001 Glutamate-1-semialdehyde aminotransferase; SPTR: Q72K83 Glutamate-1-semialdehyde 2,1-aminomutase; PFAM: Aminotransferase class-III; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase
YP_003507179.1	PFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like; Shikimate/quinate 5-dehydrogenase; SPTR: A5UU33 Glutamyl-tRNA reductase; PRIAM: Glutamyl-tRNA reductase; COGs: COG0373 Glutamyl-tRNA reductase; InterPro IPR015895:IPR006151; KEGG: bpt:Bpet4543 glutamyl-tRNA reductase; PFAM: Shikimate / quinate 5-dehydrogenase; Glutamyl-tRNAGlu reductase, N-terminal domain; TIGRFAM: glutamyl-tRNA reductase
YP_003507180.1	TIGRFAM: porphobilinogen deaminase; PRIAM: Hydroxymethylbilane synthase; PFAM: Porphobilinogen deaminase; SPTR: A6EES9 Porphobilinogen deaminase; KEGG: aha:AHA_0469 porphobilinogen deaminase; COGs: COG0181 Porphobilinogen deaminase; InterPro IPR000860; PFAM: Porphobilinogen deaminase, dipyromethane cofactor binding domain; TIGRFAM: porphobilinogen deaminase
YP_003507181.1	PFAM: Uroporphyrinogen III synthase HEM4; SPTR: A1HSI5 Uroporphyrin-III C-methyltransferase; InterPro IPR003754; COGs: COG1587 Uroporphyrinogen-III synthase; KEGG: mxa:MXAN_2657 uroporphyrinogen-III synthase; PFAM: Uroporphyrinogen-III synthase HemD
YP_003507182.1	PRIAM: Porphobilinogen synthase; PFAM: delta-aminolevulinic acid dehydratase; InterPro IPR001731; KEGG: scl:sce0016 delta-aminolevulinic acid dehydratase; COGs: COG0113 Delta-aminolevulinic acid dehydratase; SPTR: A2BMK0 Delta-aminolevulinic acid dehydratase; PFAM: Delta-aminolevulinic acid dehydratase
YP_003507183.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; InterPro IPR004358:IPR003594:IPR003661:IPR005467; KEGG: ppd:Ppro_0508 integral membrane sensor signal transduction histidine kinase; COGs: COG2205 Osmosensitive K+ channel histidine kinase; SPTR: A6EES6 Sensor protein; PFAM: His Kinase A (phosphoacceptor) domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_003507184.1	SMART: response regulator receiver; SPTR: A6EES5 Two component transcriptional regulator, winged helix family protein; PFAM: response regulator receiver; transcriptional regulator domain protein; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: glo:Glov_3569 two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_003507185.1	TIGRFAM: uroporphyrinogen decarboxylase; PRIAM: Uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); InterPro IPR000257:IPR006361; KEGG: glo:Glov_3245 uroporphyrinogen decarboxylase; COGs: COG0407 Uroporphyrinogen-III decarboxylase; SPTR: Q39ZQ8 Uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); TIGRFAM: uroporphyrinogen decarboxylase
YP_003507186.1	PFAM: Chlorite dismutase; SPTR: A9A1Z8 Chlorite dismutase; InterPro IPR010644; COGs: COG3253 conserved hypothetical protein; KEGG: bsu:BSU37670 putative heme peroxidase; PFAM: Chlorite dismutase
YP_003507187.1	TIGRFAM: ferrochelatase; PRIAM: Ferrochelatase; PFAM: ferrochelatase; InterPro IPR001015; KEGG: bha:BH1203 ferrochelatase; COGs: COG0276 Protoheme ferro-lyase (ferrochelatase); SPTR: Q72L32 Ferrochelatase; PFAM: Ferrochelatase; TIGRFAM: ferrochelatase
YP_003507188.1	TIGRFAM: protoporphyrinogen oxidase; PRIAM: Protoporphyrinogen oxidase; PFAM: amine oxidase; FAD dependent oxidoreductase; InterPro IPR006076:IPR002937:IPR004572; KEGG: bcy:Bcer98_0826 protoporphyrinogen oxidase; COGs: COG1232 Protoporphyrinogen oxidase; SPTR: A4A127 Protoporphyrinogen IX and coproporphyrinogen III oxidase; PFAM: Flavin containing amine oxidoreductase; TIGRFAM: protoporphyrinogen oxidase
YP_003507189.1	PFAM: integrase family protein; SPTR: Q859R3 ORF40; InterPro IPR002104; COGs: COG4974 Site-specific recombinase XerD; KEGG: bcb:BCB4264_A2589 DNA integration/recombination/invertion protein; PFAM: Phage integrase family
YP_003507190.1	PFAM: restriction endonuclease; InterPro IPR007560; KEGG: bha:BH0499 hypothetical protein; SPTR: Q859R2 ORF39; PFAM: Restriction endonuclease
YP_003507191.1	PFAM: peptidase S24 and S26 domain protein; SMART: helix-turn-helix domain protein; InterPro IPR011056:IPR001387:IPR000223; KEGG: dvm:DvMF_0352 putative phage repressor; COGs: COG2932 transcriptional regulator protein; SPTR: Q859R0 ORF37; PFAM: Helix-turn-helix; Peptidase S24-like
YP_003507192.1	TIGRFAM: DNA binding domain protein, excisionase family; InterPro IPR010093; KEGG: dvl:Dvul_0085 DNA binding domain-containing protein; TIGRFAM: DNA binding domain, excisionase family
YP_003507193.1	KEGG: hypothetical protein
YP_003507195.1	KEGG: hypothetical protein; SPTR: Q859T9 DNA, complete genome
YP_003507196.1	SPTR: Q859T8 Putative uncharacterized protein
YP_003507197.1	KEGG: bmn:BMA10247_1992 Smr domain-containing protein
YP_003507198.1	SPTR: Q859T6 Putative uncharacterized protein
YP_003507199.1	SPTR: Q859T5 Putative uncharacterized protein
YP_003507200.1	KEGG: bbk:BARBAKC583_0145 TolA domain-containing protein
YP_003507201.1	SPTR: Q859T3 Putative uncharacterized protein
YP_003507202.1	PFAM: cell wall hydrolase/autolysin; SPTR: A3UD36 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; KEGG: ngk:NGK_1784 putative amidase; PFAM: N-acetylmuramoyl-L-alanine amidase
YP_003507203.1	SPTR: B3XVS9 Putative uncharacterized protein
YP_003507205.1	PFAM: PilT protein domain protein; SMART: Nucleotide binding protein PINc; InterPro IPR002716:IPR006596:IPR002850; KEGG: psp:PSPPH_A0052 hypothetical protein; COGs: COG1569 nucleic acid-binding protein contains PIN domain; SPTR: A4BQB6 Putative uncharacterized protein; PFAM: PIN domain; TIGRFAM: conserved hypothetical protein TIGR00305
YP_003507206.1	SPTR: Q859T0 Putative uncharacterized protein
YP_003507207.1	SPTR: Q859S9 Major structure protein
YP_003507208.1	SPTR: Q859S8 Putative uncharacterized protein
YP_003507209.1	SPTR: Q859S7 Putative uncharacterized protein
YP_003507210.1	SPTR: Q859S6 Putative uncharacterized protein
YP_003507212.1	KEGG: GH10367 gene product from transcript GH10367-RA
YP_003507217.1	SPTR: Q859S0 Putative uncharacterized protein
YP_003507218.1	PFAM: Lytic transglycosylase catalytic; InterPro IPR008258; KEGG: zmo:ZMO1186 lytic murein transglycosylase; SPTR: Q859R5 ORF27; PFAM: Transglycosylase SLT domain
YP_003507219.1	TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; InterPro IPR006674:IPR003607:IPR006675; KEGG: pca:Pcar_2753 hypothetical protein; COGs: COG2206 HD-GYP domain; SPTR: A4BGC8 Response regulator, putative; PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG
YP_003507220.1	PFAM: protein of unknown function DUF815; SPTR: A0YQ21 Putative uncharacterized protein; InterPro IPR008533; COGs: COG2607 ATPase (AAA+ superfamily); KEGG: hch:HCH_05795 ATPase; PFAM: Protein of unknown function (DUF815)
YP_003507221.1	TIGRFAM: CTP synthase; PRIAM: CTP synthase; PFAM: CTP synthase-like; glutamine amidotransferase class-I; InterPro IPR000991:IPR017456:IPR004468; KEGG: bsu:BSU37150 CTP synthetase; COGs: COG0504 CTP synthase (UTP-ammonia lyase); SPTR: Q72IN0 CTP synthase; PFAM: CTP synthase N-terminus; Glutamine amidotransferase class-I; TIGRFAM: CTP synthase
YP_003507222.1	PFAM: beta-lactamase domain protein; SPTR: Q97VU4 Putative uncharacterized protein; InterPro IPR001279; COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: eba:ebA3630 putative metallo-beta-lactamase family protein; PFAM: Metallo-beta-lactamase superfamily
YP_003507223.1	PFAM: protein of unknown function DUF1458; SPTR: A6F2K5 Putative uncharacterized protein; InterPro IPR009923; COGs: COG3360 conserved hypothetical protein; KEGG: bpt:Bpet3469 hypothetical protein; PFAM: Protein of unknown function (DUF1458)
YP_003507224.1	PRIAM: Gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; InterPro IPR000101; KEGG: bha:BH0867 cephalosporin acylase; COGs: COG0405 Gamma-glutamyltransferase; SPTR: A3ILW4 Gamma-glutamyltransferase; PFAM: Gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltranspeptidase
YP_003507225.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A0P1D0 Putative uncharacterized protein; InterPro IPR000515; COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; KEGG: bpt:Bpet2850 ABC transporter inner membrane protein; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003507226.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A0P1D1 ABC transporter, membrane spanning protein (Dipeptide); InterPro IPR000515; COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; KEGG: psp:PSPPH_2785 ABC-transport protein, inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003507227.1	KEGG: bja:bll2868 ABC transporter substrate-binding protein; COGs: COG0747 ABC-type dipeptide transport system periplasmic component; SPTR: A0P1D2 ABC transporter, substrate binding protein (Dipeptide); PFAM: extracellular solute-binding protein family 5; InterPro IPR000914; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle
YP_003507228.1	PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: A6CYB6 Putative transcriptional regulatory protein; KEGG: sde:Sde_1270 GntR family transcriptional regulator; COGs: COG2186 Transcriptional regulators; InterPro IPR000524:IPR011711; PFAM: Bacterial regulatory proteins, gntR family; FCD domain
YP_003507229.1	PFAM: metallophosphoesterase; SPTR: A2U9C2 Putative uncharacterized protein; InterPro IPR004843; COGs: COG1692 conserved hypothetical protein; KEGG: sil:SPO2953 Ser/Thr protein phosphatase family protein; PFAM: Calcineurin-like phosphoesterase; TIGRFAM: conserved hypothetical protein TIGR00282
YP_003507230.1	PFAM: protein of unknown function DUF255; SPTR: A3ZWX9 Putative uncharacterized protein; InterPro IPR004879; COGs: COG1331 Highly conserved protein containing a thioredoxin domain; KEGG: ank:AnaeK_1004 protein of unknown function DUF255; PFAM: Protein of unknown function, DUF255
YP_003507231.1	PFAM: RDD domain containing protein; InterPro IPR010432; KEGG: afw:Anae109_0269 RDD domain-containing protein; SPTR: A6G277 Putative uncharacterized protein; PFAM: RDD family
YP_003507232.1	PFAM: ATP-dependent Clp protease adaptor protein ClpS; SPTR: Q0AQ60 ATP-dependent Clp protease adapter protein clpS; InterPro IPR003769; COGs: COG2127 conserved hypothetical protein; KEGG: acr:Acry_2545 ATP-dependent Clp protease adaptor protein ClpS; PFAM: ATP-dependent Clp protease adaptor protein ClpS
YP_003507233.1	SPTR: A3TII7 Putative integral membrane protein; COGs: COG0053 Co/Zn/Cd cation transporter; KEGG: gur:Gura_3416 Co/Zn/Cd cation transporter-like protein; PFAM: Cation efflux family
YP_003507234.1	TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: AAA ATPase; InterProIPR001270:IPR003959:IPR013093:IPR011704:IPR 004176:IPR003593:IPR013461; KEGG: oan:Oant_2021 ATP-dependent Clp protease, ATP-binding subunit ClpA; COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; SPTR: P05444 ClpA homolog protein; PFAM: ATPase family associated with various cellular activities (AAA); ATPase family associated with various cellular activities (AAA); C-terminal, D2-small domain, of ClpB protein; TIGRFAM: ATP-dependent Clp protease ATP-binding subunit clpA
YP_003507235.1	PFAM: molybdopterin dehydrogenase FAD-binding; [2Fe-2S]-binding domain protein; CO dehydrogenase flavoprotein domain protein; ferredoxin; SPTR: A3TR15 Putative dehydrogenase; InterProIPR001041:IPR005107:IPR002888:IPR002346:IPR 006058; COGs: COG4630 Xanthine dehydrogenase iron-sulfur cluster and FAD-binding subunit A; KEGG: sus:Acid_0355 molybdopterin dehydrogenase, FAD-binding; PFAM: CO dehydrogenase flavoprotein C-terminal domain; [2Fe-2S] binding domain; 2Fe-2S iron-sulfur cluster binding domain; FAD binding domain in molybdopterin dehydrogenase; TIGRFAM: xanthine dehydrogenase, small subunit
YP_003507236.1	TIGRFAM: xanthine dehydrogenase, molybdopterin binding subunit; PRIAM: Xanthine dehydrogenase; PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; InterPro IPR008274:IPR000674:IPR014309; KEGG: sus:Acid_0356 xanthine oxidase; COGs: COG4631 Xanthine dehydrogenase molybdopterin-binding subunit B; SPTR: A3TR16 Putative dehydrogenase; PFAM: Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding domain; TIGRFAM: xanthine dehydrogenase, molybdopterin binding subunit
YP_003507237.1	TIGRFAM: prevent-host-death family protein; SPTR: A4BVI7 Putative uncharacterized protein; InterPro IPR006442; COGs: COG4118 Antitoxin of toxin-antitoxin stability system; KEGG: pna:Pnap_3716 prevent-host-death family protein; TIGRFAM: prevent-host-death family protein
YP_003507238.1	TIGRFAM: xanthine dehydrogenase accessory protein XdhC; PFAM: protein of unknown function DUF182; InterPro IPR003777:IPR014308; KEGG: spe:Spro_2302 xanthine dehydrogenase accessory protein XdhC; COGs: COG1975 Xanthine and CO dehydrogenase maturation factor XdhC/CoxF family; SPTR: A3TR17 Putative uncharacterized protein; PFAM: XdhC and CoxI family; TIGRFAM: xanthine dehydrogenase accessory protein XdhC
YP_003507239.1	KEGG: bcr:BCAH187_A3838 sugar ABC transporter, ATP-binding protein; COGs: COG3845 ABC-type uncharacterized transport systems ATPase components; SPTR: B1L5P8 ABC-type uncharacterized transport system, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593:IPR017871; PFAM: ABC transporter
YP_003507240.1	PFAM: inner-membrane translocator; SPTR: B1L5P7 ABC-type uncharacterized transport system, permease component; InterPro IPR001851; COGs: COG4603 ABC-type uncharacterized transport system permease component; KEGG: bxe:Bxe_A1939 ABC transporter, inner membrane subunit; PFAM: Branched-chain amino acid transport system / permease component
YP_003507241.1	PFAM: inner-membrane translocator; SPTR: O29373 Ribose ABC transporter, permease protein (RbsC-2); InterPro IPR001851; COGs: COG1079 ABC-type transport system permease component; KEGG: dde:Dde_1509 branched chain amino acid ABC transporter, permease protein; PFAM: Branched-chain amino acid transport system / permease component
YP_003507242.1	PFAM: basic membrane lipoprotein; SPTR: B1L5P5 ABC-type transport system, periplasmic component/surface lipoprotein; InterPro IPR003760; COGs: COG1744 Uncharacterized ABC-type transport system periplasmic component/surface lipoprotein; KEGG: hch:HCH_01105 uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein; PFAM: Basic membrane protein
YP_003507243.1	TIGRFAM: adenine deaminase; PRIAM: Adenine deaminase; PFAM: amidohydrolase; InterPro IPR006680:IPR006679; KEGG: dal:Dalk_3756 adenine deaminase; COGs: COG1001 Adenine deaminase; SPTR: Q3AE81 Adenine deaminase 2; PFAM: Amidohydrolase family; TIGRFAM: adenine deaminase
YP_003507244.1	TIGRFAM: guanine deaminase; PFAM: amidohydrolase; Amidohydrolase 3; InterPro IPR006680:IPR013108:IPR014311:IPR017594; KEGG: sus:Acid_0357 guanine deaminase; COGs: COG0402 Cytosine deaminase and related metal-dependent hydrolase; SPTR: Q9RYX4 Probable guanine deaminase; PFAM: Amidohydrolase family; TIGRFAM: guanine deaminase; guanine deaminase
YP_003507245.1	PFAM: NUDIX hydrolase; SPTR: A6C338 Putative uncharacterized protein; InterPro IPR000086; COGs: COG4112 phosphoesterase (MutT family); KEGG: bsu:BSU17400 hypothetical protein; PFAM: NUDIX domain
YP_003507246.1	TIGRFAM: DNA adenine methylase; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); PFAM: D12 class N6 adenine-specific DNA methyltransferase; InterPro IPR002294:IPR012327:IPR002052:IPR012326; KEGG: sty:HCM1.59 putative DNA modification methylase; COGs: COG0338 Site-specific DNA methylase; SPTR: O58765 330aa long hypothetical modification methylase (Adenine-specific); PFAM: D12 class N6 adenine-specific DNA methyltransferase; TIGRFAM: DNA adenine methylase (dam)
YP_003507248.1	PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; SPTR: A2UAS1 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; InterPro IPR001753:IPR006176:IPR006108; COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; KEGG: mxa:MXAN_5136 3-hydroxyacyl-CoA dehydrogenase; PFAM: Enoyl-CoA hydratase/isomerase family; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
YP_003507249.1	InterPro IPR013026; KEGG: tgr:Tgr7_0524 tetratricopeptide TPR_2 repeat protein
YP_003507250.1	PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Thioredoxin domain; SPTR: A2W1A9 Thiol-disulfide isomerase and thioredoxin; InterPro IPR006662:IPR013766:IPR000866:IPR013740; COGs: COG0526 Thiol-disulfide isomerase and thioredoxins; KEGG: smt:Smal_2397 redoxin domain protein; PFAM: Redoxin
YP_003507251.1	PFAM: ferric-uptake regulator; SPTR: A7CTJ2 Ferric uptake regulator, Fur family; InterPro IPR002481; COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; KEGG: dac:Daci_4458 ferric uptake regulator family protein; PFAM: Ferric uptake regulator family
YP_003507252.1	PFAM: periplasmic solute binding protein; SPTR: A6FKU0 Periplasmic solute binding protein; InterPro IPR006129:IPR006128:IPR006127; COGs: COG0803 ABC-type metal ion transport system periplasmic component/surface adhesin; KEGG: eba:ebA1814 ABC transporter, periplasmic binding protein precursor; PFAM: Periplasmic solute binding protein family
YP_003507254.1	PRIAM: N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; InterPro IPR002508; KEGG: ank:AnaeK_2161 N-acetylmuramoyl-L-alanine amidase; COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; SPTR: A3Z1H0 Cell wall hydrolase/autolysin; PFAM: N-acetylmuramoyl-L-alanine amidase
YP_003507255.1	SPTR: A4BDG9 Peptidyl-prolyl cis-trans isomerase; COGs: COG1047 FKBP-type peptidyl-prolyl cis-trans isomerase 2; KEGG: mxa:MXAN_3831 FKBP-type peptidylprolyl cis-trans isomerase SlyD
YP_003507256.1	PFAM: YibE/F family protein; SPTR: A3TPQ2 Putative membrane protein; InterPro IPR012507; COGs: COG5438 multitransmembrane protein; KEGG: vha:VIBHAR_01199 hypothetical protein; PFAM: YibE/F-like protein
YP_003507258.1	TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; InterPro IPR003799; KEGG: lch:Lcho_1153 CRISPR-associated Cas2 family protein; COGs: COG1343 Uncharacterized protein predicted to be involved in DNA repair; SPTR: A6NPB8 Putative uncharacterized protein; PFAM: Uncharacterized ACR, COG1343; TIGRFAM: CRISPR-associated protein Cas2
YP_003507259.1	TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; InterPro IPR002729; KEGG: mca:MCA0651 CRISPR-associated Cas1 family protein; COGs: COG1518 Uncharacterized protein predicted to be involved in DNA repair; SPTR: A3J7R4 Putative uncharacterized protein; PFAM: Protein of unknown function DUF48; TIGRFAM: CRISPR-associated protein Cas1, DVULG subtype; CRISPR-associated protein Cas1
YP_003507260.1	TIGRFAM: CRISPR-associated protein Cas4; PFAM: protein of unknown function DUF83; InterPro IPR002785:IPR013343; KEGG: eba:ebA3284 RecB family exonuclease protein; COGs: COG1468 RecB family exonuclease; SPTR: A3VS22 RecB family exonuclease; PFAM: Domain of unknown function DUF83; TIGRFAM: CRISPR-associated protein Cas4
YP_003507261.1	TIGRFAM: CRISPR-associated protein, APE2256 family; SPTR: A8DJU5 Putative crispr-associated protein; InterPro IPR013442; COGs: COG4006 conserved hypothetical protein; KEGG: dol:Dole_0745 CRISPR-associated protein APE2256 family; PFAM: CRISPR-associated protein (Cas_APE2256); TIGRFAM: putative CRISPR-associated protein, APE2256 family
YP_003507262.1	TIGRFAM: CRISPR-associated RAMP protein, Cmr6 family; PFAM: protein of unknown function DUF324; InterPro IPR005537:IPR010172; KEGG: mxa:MXAN_7277 CRISPR-associated RAMP protein Cmr6; COGs: COG1604 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); SPTR: A4BL62 Putative uncharacterized protein; PFAM: RAMP superfamily; TIGRFAM: CRISPR-associated RAMP protein, Cmr6 family
YP_003507263.1	TIGRFAM: CRISPR-associated protein, Cmr5 family; InterPro IPR010160; KEGG: mmw:Mmwyl1_2689 CRISPR-associated Cmr5 family protein; PFAM: CRISPR-associated protein (Cas_Cmr5); TIGRFAM: CRISPR-associated protein, Cmr5 family
YP_003507264.1	TIGRFAM: CRISPR-associated RAMP protein, Cmr4 family; PFAM: protein of unknown function DUF324; InterPro IPR005537:IPR013410; KEGG: mxa:MXAN_7279 CRISPR-associated RAMP protein Cmr4; COGs: COG1336 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); SPTR: Q8U1S9 Putative uncharacterized protein PF1126; PFAM: RAMP superfamily; TIGRFAM: CRISPR-associated RAMP protein, Cmr4 family
YP_003507265.1	TIGRFAM: CRISPR-associated protein, Cmr3 family; SPTR: A2V336 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)-like; InterPro IPR010165; COGs: COG1769 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); KEGG: bha:BH0329 hypothetical protein; PFAM: CRISPR-associated protein (Cas_Cmr3); TIGRFAM: CRISPR-associated protein, Cmr3 family
YP_003507266.1	SPTR: A2V335 CRISPR-associated protein, Crm2 family; KEGG: mmw:Mmwyl1_2692 CRISPR-associated RAMP Crm2 family protein; TIGRFAM: CRISPR-associated protein, Crm2 family; InterPro IPR000160:IPR013407; COGs: COG1353 hydrolase of the HD superfamily (permuted catalytic motifs); TIGRFAM: CRISPR-associated protein, Crm2 family
YP_003507267.1	TIGRFAM: CRISPR-associated RAMP protein, Cmr1 family; PFAM: protein of unknown function DUF324; InterPro IPR005537:IPR007522; KEGG: bha:BH0327 hypothetical protein; COGs: COG1367 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); SPTR: A2V334 CRISPR-associated RAMP protein, Cmr1 family; PFAM: RAMP superfamily; TIGRFAM: CRISPR-associated RAMP protein, Cmr1 family
YP_003507268.1	TIGRFAM: CRISPR-associated protein, Csd2 family; CRISPR-associated protein, CT1132 family; PFAM: CRISPR-associated protein TM1801; InterPro IPR006482:IPR013418; KEGG: mca:MCA0654 CRISPR-associated Csh2 family protein; COGs: COG3649 Uncharacterized protein predicted to be involved in DNA repair; SPTR: A7AL45 Putative uncharacterized protein; PFAM: Family of unknown function (DUF694); TIGRFAM: CRISPR-associated protein, Csd2 family; CRISPR-associated protein, CT1132 family
YP_003507269.1	TIGRFAM: CRISPR-associated protein, Csd1 family; InterPro IPR010144; KEGG: psa:PST_3747 CRISPR-associated protein, CT1133 family; SPTR: A3VS24 Putative uncharacterized protein; PFAM: CRISPR-associated protein (Cas_Csd1); TIGRFAM: CRISPR-associated protein, Csd1 family
YP_003507270.1	TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; InterPro IPR010155:IPR013422; KEGG: dvm:DvMF_1972 CRISPR-associated protein Cas5 family; SPTR: A3J8H9 CRISPR-associated protein, CT1134 family; PFAM: CRISPR-associated protein (Cas_Cas5d); TIGRFAM: CRISPR-associated protein Cas5, N-terminal domain; CRISPR-associated protein Cas5, Dvulg subtype
YP_003507271.1	TIGRFAM: metal dependent phophohydrolase; PFAM: DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicase; InterPro IPR011545:IPR014001:IPR006675; KEGG: psa:PST_3745 CRISPR-associated helicase Cas3 domain protein; COGs: COG1203 helicase; SPTR: A7JQI2 Possible helicase; PFAM: DEAD/DEAH box helicase; TIGRFAM: CRISPR-associated helicase Cas3; uncharacterized domain HDIG
YP_003507272.1	SMART: Tetratricopeptide domain protein; InterPro IPR013026; KEGG: pat:Patl_2310 diguanylate cyclase; SPTR: A6MN94 Putative uncharacterized protein
YP_003507273.1	TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; InterPro IPR002313:IPR004364:IPR004365:IPR006195; KEGG: bsu:BSU00820 lysyl-tRNA synthetase; COGs: COG1190 Lysyl-tRNA synthetase (class II); SPTR: P41255 Lysyl-tRNA synthetase; PFAM: OB-fold nucleic acid binding domain; tRNA synthetases class II (D, K and N); TIGRFAM: lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial
YP_003507274.1	PFAM: transcription elongation factor GreA/GreB domain protein; SPTR: Q0B0N4 Transcription elongation factor greA; InterPro IPR001437; COGs: COG0782 Transcription elongation factor; KEGG: eli:ELI_05700 transcription elongation factor; PFAM: Prokaryotic transcription elongation factor, GreA/GreB, C-terminal domain; Prokaryotic transcription elongation factor, GreA/GreB, N-terminal domain
YP_003507276.1	PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: Q97Z53 Transcriptional regulator, marR family, putative; KEGG: pca:Pcar_2913 MarR family transcriptional regulator; InterPro IPR000835; PFAM: MarR family
YP_003507277.1	PFAM: outer membrane efflux protein; SPTR: A5XRB2 Outer membrane efflux protein; InterPro IPR003423; COGs: COG1538 Outer membrane protein; KEGG: bmv:BMASAVP1_A0046 TolC family type I secretion outer membrane protein; PFAM: Outer membrane efflux protein
YP_003507278.1	KEGG: rme:Rmet_4596 outer membrane efflux protein; SPTR: A3WD65 RND efflux system, outer membrane lipoprotein, NodT; PFAM: outer membrane efflux protein; InterPro IPR003423; PFAM: Outer membrane efflux protein
YP_003507279.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; InterPro IPR006143; KEGG: acp:A2cp1_3561 efflux transporter, RND family, MFP subunit; COGs: COG1566 Multidrug resistance efflux pump; SPTR: A3IQK0 Putative uncharacterized protein; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit
YP_003507280.1	PFAM: acriflavin resistance protein; SPTR: A1HQ06 Acriflavin resistance protein; InterPro IPR001036; COGs: COG0841 Cation/multidrug efflux pump; KEGG: vei:Veis_2349 acriflavin resistance protein; PFAM: AcrB/AcrD/AcrF family
YP_003507281.1	KEGG: bcr:BCAH187_A3191 hypothetical protein; SPTR: A4BEQ9 Putative uncharacterized protein
YP_003507282.1	TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A subunit; PRIAM: Amidase; PFAM: Amidase; InterPro IPR000120:IPR004412; KEGG: ppd:Ppro_3088 glutamyl-tRNA(Gln) amidotransferase, A subunit; COGs: COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidase; SPTR: Q9RTA9 Glutamyl-tRNA(Gln) amidotransferase subunit A; PFAM: Amidase; TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit
YP_003507283.1	PRIAM: DNA-directed DNA polymerase; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; InterPro IPR013520:IPR006055; KEGG: bvi:Bcep1808_0926 DNA polymerase III, epsilon subunit; COGs: COG2176 DNA polymerase III alpha subunit (gram-positive type); SPTR: A2WBV8 DNA polymerase III; PFAM: Exonuclease; TIGRFAM: exonuclease, DNA polymerase III, epsilon subunit family
YP_003507284.1	KEGG: pap:PSPA7_6333 TonB protein
YP_003507287.1	TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase; InterPro IPR001804:IPR004439; KEGG: cti:RALTA_A2531 isocitrate (NADP) dehydrogenase; COGs: COG0538 Isocitrate dehydrogenase; SPTR: A3RYJ2 Isocitrate dehydrogenase [NADP]; PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent, prokaryotic type
YP_003507288.1	PFAM: Abortive infection protein; InterPro IPR003675; KEGG: scl:sce7299 hypothetical protein; SPTR: A6G9K1 Putative uncharacterized protein; PFAM: CAAX amino terminal protease family
YP_003507289.1	PFAM: regulatory protein AsnC/Lrp family; InterPro IPR000485; KEGG: mmw:Mmwyl1_0222 AsnC family transcriptional regulator; SPTR: A4BRW5 Transcription regulator; PFAM: AsnC family
YP_003507290.1	PFAM: metallophosphoesterase; SPTR: A1HQU5 Metallophosphoesterase; InterPro IPR004843; COGs: COG1768 phosphohydrolase; KEGG: mxa:MXAN_0344 metallophosphoesterase; PFAM: Calcineurin-like phosphoesterase
YP_003507291.1	PFAM: regulatory protein RecX; SPTR: Q72K66 Regulatory protein recX; InterPro IPR003783; COGs: COG2137 conserved hypothetical protein; KEGG: tmz:Tmz1t_0710 regulatory protein RecX; PFAM: RecX family
YP_003507292.1	SPTR: A3WX52 Peptidase M29, aminopeptidase II; KEGG: mes:Meso_3021 Aminopeptidase T. Metallo peptidase. MEROPS family M29; PFAM: peptidase M29 aminopeptidase II; InterPro IPR000787; COGs: COG2309 Leucyl aminopeptidase (aminopeptidase T); PFAM: Thermophilic metalloprotease (M29)
YP_003507293.1	TIGRFAM: tryptophan synthase, beta subunit; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; InterPro IPR001926:IPR006653:IPR006654; KEGG: glo:Glov_1211 tryptophan synthase, beta subunit; COGs: COG0133 Tryptophan synthase beta chain; SPTR: Q5SJB9 Tryptophan synthase beta chain; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: tryptophan synthase, beta subunit
YP_003507294.1	TIGRFAM: tryptophan synthase, alpha subunit; PRIAM: Tryptophan synthase; PFAM: tryptophan synthase alpha chain; InterPro IPR002028; KEGG: acp:A2cp1_4201 tryptophan synthase, alpha subunit; COGs: COG0159 Tryptophan synthase alpha chain; SPTR: Q5SJC0 Tryptophan synthase alpha chain; PFAM: Tryptophan synthase alpha chain; TIGRFAM: tryptophan synthase, alpha subunit
YP_003507295.1	PFAM: DNA methylase N-4/N-6 domain protein; SPTR: A6GFA8 Putative DNA methylase; InterPro IPR001091:IPR002295:IPR002941:IPR002052; COGs: COG0863 DNA modification methylase; KEGG: scl:sce9358 DNA methyltransferase; PFAM: DNA methylase
YP_003507296.1	PFAM: beta-lactamase domain protein; SPTR: A3ZWA9 Putative Zn-dependent hydrolase; InterPro IPR001279; COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: aba:Acid345_0039 beta-lactamase-like protein; PFAM: Metallo-beta-lactamase superfamily
YP_003507297.1	TIGRFAM: phenylacetic acid degradation protein paaN; PFAM: MaoC domain protein dehydratase; Aldehyde Dehydrogenase; InterPro IPR002539:IPR015590:IPR011966; KEGG: ecy:ECSE_1472 phenylacetic acid degradation protein PaaZ; COGs: COG1012 NAD-dependent aldehyde dehydrogenase; SPTR: P77455 Protein maoC; PFAM: Aldehyde dehydrogenase family; MaoC like domain; TIGRFAM: phenylacetic acid degradation protein paaN
YP_003507298.1	PFAM: Transketolase central region; Transketolase domain protein; SPTR: Q9Y8I6 Pyruvate decarboxylase E1 beta subunit; InterPro IPR005476:IPR005475; COGs: COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component eukaryotic type beta subunit; KEGG: bha:BH0214 pyruvate dehydrogenase E1 (lipoamide) beta subunit; PFAM: Transketolase, pyrimidine binding domain; Transketolase, C-terminal domain
YP_003507299.1	TIGRFAM: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit; PRIAM: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring); PFAM: dehydrogenase E1 component; InterPro IPR001017:IPR017596; KEGG: gbm:Gbem_0459 pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit; COGs: COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component eukaryotic type alpha subunit; SPTR: Q5UYG2 Pyruvate dehydrogenase E1 component alpha subunit; PFAM: Dehydrogenase E1 component; TIGRFAM: pyruvate dehydrogenase E1 component, alpha subunit
YP_003507300.1	PFAM: aminotransferase class I and II; SPTR: A0P2C7 Putative uncharacterized protein; InterPro IPR001176:IPR004839; COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; KEGG: gox:GOX1103 hypothetical protein; PFAM: Aminotransferase class I and II
YP_003507301.1	KEGG: reh:H16_A2509 predicted periplasmic protein; PFAM: Predicted periplasmic protein (DUF2091)
YP_003507302.1	TIGRFAM: triosephosphate isomerase; PFAM: triosephosphate isomerase; InterPro IPR000652; KEGG: bbr:BB3876 triosephosphate isomerase; COGs: COG0149 Triosephosphate isomerase; SPTR: Q5SJR1 Triosephosphate isomerase; PFAM: Triosephosphate isomerase; TIGRFAM: triosephosphate isomerase
YP_003507303.1	PRIAM: Methylcrotonoyl-CoA carboxylase; PFAM: carboxyl transferase; InterPro IPR000022:IPR011762:IPR011763; KEGG: aba:Acid345_1428 propionyl-CoA carboxylase; COGs: COG4799 Acetyl-CoA carboxylase carboxyltransferase component (subunits alpha and beta); SPTR: A4CLN1 Propionyl-CoA carboxylase, beta subunit, putative; PFAM: Carboxyl transferase domain
YP_003507304.1	SPTR: P80146 Extracellular serine proteinase; KEGG: mca:MCA0875 serine protease; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; proteinase inhibitor I9 subtilisin propeptide; InterPro IPR000209:IPR010259:IPR000711; COGs: COG1404 Subtilisin-like serine protease; PFAM: Peptidase inhibitor I9; Subtilase family
YP_003507305.1	PFAM: VWA containing CoxE family protein; SMART: von Willebrand factor type A; InterPro IPR008912:IPR002035; KEGG: rce:RC1_1072 CoxE, putative; COGs: COG3552 Protein containing von Willebrand factor type A (vWA) domain; SPTR: A6E6A6 VWA domain containing CoxE-like family protein; PFAM: VWA domain containing CoxE-like protein
YP_003507306.1	PFAM: ATPase associated with various cellular activities AAA_5; ATPase associated with various cellular activities AAA_3; SMART: AAA ATPase; InterPro IPR011703:IPR011704:IPR003593; KEGG: rce:RC1_1073 carbon monoxide dehydrogenase D protein, putative; COGs: COG0714 MoxR-like ATPase; SPTR: A3JYV7 Putative uncharacterized protein; PFAM: ATPase family associated with various cellular activities (AAA)
YP_003507307.1	PFAM: molybdopterin dehydrogenase FAD-binding; SPTR: A0NSY6 Putative carbon monoxide dehydrogenase medium subunit transmembrane protein; InterPro IPR002346:IPR002016; COGs: COG1319 Aerobic-type carbon monoxide dehydrogenase middle subunit CoxM/CutM homologs; KEGG: rce:RC1_1074 carbon monoxide dehydrogenase medium chain; PFAM: FAD binding domain in molybdopterin dehydrogenase; CO dehydrogenase flavoprotein C-terminal domain
YP_003507308.1	PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; SPTR: A3RYZ3 Carbon monoxide oxygenase (Cytochrome b-561) large subunit; InterPro IPR008274:IPR000674:IPR017441; COGs: COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL/CutL homologs; KEGG: acr:Acry_0076 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; PFAM: Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding domain; Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; TIGRFAM: carbon-monoxide dehydrogenase, large subunit
YP_003507309.1	PFAM: [2Fe-2S]-binding domain protein; ferredoxin; SPTR: A3THD0 Hypothetical dehydrogenase; InterPro IPR001041:IPR002888; COGs: COG2080 Aerobic-type carbon monoxide dehydrogenase small subunit CoxS/CutS homologs; KEGG: rce:RC1_1076 carbon monoxide dehydrogenase small chain; PFAM: [2Fe-2S] binding domain; 2Fe-2S iron-sulfur cluster binding domain
YP_003507310.1	PRIAM: Xanthine dehydrogenase; PFAM: protein of unknown function DUF182; InterPro IPR003777; KEGG: pmy:Pmen_2200 hypothetical protein; COGs: COG1975 Xanthine and CO dehydrogenase maturation factor XdhC/CoxF family; SPTR: A3HSY3 Putative uncharacterized protein; PFAM: XdhC and CoxI family
YP_003507311.1	PFAM: class II aldolase/adducin family protein; SPTR: A6ZIJ4 Fuculose-1-phosphate aldolase; InterPro IPR001303; COGs: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerase and aldolase; KEGG: dds:Ddes_0068 class II aldolase/adducin family protein; PFAM: Class II Aldolase and Adducin N-terminal domain
YP_003507313.1	PFAM: alpha/beta hydrolase fold; SPTR: A6ZIJ3 Proline iminopeptidase; InterPro IPR002410:IPR000073; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); KEGG: mpo:Mpop_1078 alpha/beta hydrolase fold; PFAM: alpha/beta hydrolase fold
YP_003507314.1	TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; InterProIPR013027:IPR000103:IPR000815:IPR001327:IPR 004099:IPR012999:IPR006258; KEGG: rce:RC1_2259 dihydrolipoamide dehydrogenase; COGs: COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3); SPTR: A6BZG4 Dihydrolipoyl dehydrogenase; PFAM: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: dihydrolipoamide dehydrogenase
YP_003507315.1	TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; InterProIPR004167:IPR000089:IPR001078:IPR003016:IPR 006255; KEGG: azc:AZC_4011 dihydrolipoamide succinyltransferase; COGs: COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) protein; SPTR: A6BZG5 Dihydrolipoamide succinyltransferase; PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); e3 binding domain; Biotin-requiring enzyme; TIGRFAM: 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)
YP_003507316.1	InterPro IPR001017:IPR005475:IPR011603; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PRIAM: Oxoglutarate dehydrogenase (succinyl-transferring); PFAM: Transketolase central region; dehydrogenase E1 component; SPTR: A6CG79 Alpha-ketoglutarate decarboxylase; KEGG: ank:AnaeK_0829 2-oxoglutarate dehydrogenase, E1 subunit; COGs: COG0567 2-oxoglutarate dehydrogenase complex dehydrogenase (E1); PFAM: Dehydrogenase E1 component; Transketolase, pyrimidine binding domain; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 component
YP_003507317.1	PFAM: transcriptional coactivator/pterin dehydratase; SPTR: Q01VX3 Putative pterin-4-alpha-carbinolamine dehydratase; InterPro IPR001533; COGs: COG2154 Pterin-4a-carbinolamine dehydratase; KEGG: scl:sce1698 putative pterin-4-alpha-carbinolamine dehydratase; PFAM: Pterin 4 alpha carbinolamine dehydratase
YP_003507318.1	TIGRFAM: ribosomal protein L13; PFAM: ribosomal protein L13; InterPro IPR005822:IPR005823; KEGG: abo:ABO_0576 50S ribosomal protein L13; COGs: COG0102 Ribosomal protein L13; SPTR: P60488 50S ribosomal protein L13; PFAM: Ribosomal protein L13; TIGRFAM: ribosomal protein L13, bacterial type
YP_003507319.1	PFAM: ribosomal protein S9; SPTR: P62669 30S ribosomal protein S9; InterPro IPR000754; COGs: COG0103 Ribosomal protein S9; KEGG: abo:ABO_0577 30S ribosomal protein S9; PFAM: Ribosomal protein S9/S16
YP_003507320.1	PFAM: DinB family protein; SPTR: A3VPV7 DinB family protein; InterPro IPR007837; COGs: COG2318 conserved hypothetical protein; KEGG: bid:Bind_2065 DinB family protein; PFAM: DinB family
YP_003507321.1	PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; InterPro IPR001789:IPR001867; KEGG: ade:Adeh_0411 two component transcriptional regulator; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; SPTR: A1HRU4 Two component transcriptional regulator, winged helix family; PFAM: Transcriptional regulatory protein, C terminal; Response regulator receiver domain
YP_003507322.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; InterProIPR004358:IPR003594:IPR003661:IPR000014:IPR 005467; KEGG: mxa:MXAN_4778 sensory box histidine kinase PhoR1; COGs: COG5002 Signal transduction histidine kinase; SPTR: A8CR75 Sensor protein; PFAM: His Kinase A (phosphoacceptor) domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_003507323.1	TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; InterPro IPR008170:IPR013838; KEGG: gme:Gmet_2705 phosphate uptake regulator, PhoU; COGs: COG0704 Phosphate uptake regulator; SPTR: Q9RS84 Phosphate transport system protein phoU homolog; PFAM: PhoU domain; TIGRFAM: phosphate transport system regulatory protein PhoU
YP_003507324.1	TIGRFAM: translation elongation factor P; PFAM: Elongation factor P ; Elongation factor P/YeiP protein; Elongation factor KOW domain protein; InterProIPR015365:IPR001059:IPR013185:IPR013852:IPR 011768; KEGG: dvl:Dvul_1421 translation elongation factor P; COGs: COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A); SPTR: Q76G20 Elongation factor P; PFAM: Elongation factor P (EF-P) OB domain; Elongation factor P, C-terminal; Elongation factor P (EF-P) KOW-like domain; TIGRFAM: translation elongation factor P
YP_003507325.1	TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; InterPro IPR001249:IPR000089:IPR001882; KEGG: aba:Acid345_3288 biotin carboxyl carrier protein; COGs: COG0511 Biotin carboxyl carrier protein; SPTR: A3HTT9 Acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: Biotin-requiring enzyme; TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein
YP_003507326.1	TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; biotin carboxylase domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; phosphoribosylglycinamide synthetase; Carbamoyl-phosphate synthetase large chain domain protein; InterProIPR003135:IPR005482:IPR005479:IPR000115:IPR 005481:IPR011761:IPR011764:IPR004549; KEGG: bha:BH2787 acetyl-CoA carboxylase biotin carboxylase subunit; COGs: COG0439 Biotin carboxylase; SPTR: A0YSN9 Acetyl-CoA carboxylase; PFAM: ATP-grasp domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; Biotin carboxylase C-terminal domain; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase
YP_003507327.1	TIGRFAM: pyridoxine biosynthesis protein; PFAM: Vitamin B6 biosynthesis protein; InterPro IPR001852; KEGG: ftn:FTN_0601 pyridoxine biosynthesis protein; COGs: COG0214 Pyridoxine biosynthesis enzyme; SPTR: Q5SKD9 Pyridoxal biosynthesis lyase pdxS; PFAM: SOR/SNZ family; TIGRFAM: pyridoxine biosynthesis protein
YP_003507329.1	PFAM: SNO glutamine amidotransferase; CobB/CobQ domain protein glutamine amidotransferase; SPTR: Q72KF8 Glutamine amidotransferase subunit pdxT; InterPro IPR011698:IPR002161; COGs: COG0311 glutamine amidotransferase involved in pyridoxine biosynthesis; KEGG: bsu:BSU00120 glutamine amidotransferase subunit PdxT; PFAM: SNO glutamine amidotransferase family
YP_003507330.1	TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; InterPro IPR000037; KEGG: sfu:Sfum_0771 SsrA-binding protein; COGs: COG0691 tmRNA-binding protein; SPTR: Q8RR57 SsrA-binding protein; PFAM: SmpB protein; TIGRFAM: SsrA-binding protein
YP_003507331.1	PFAM: cell wall hydrolase/autolysin; SPTR: A4EKA4 N-acetylmuramoyl-L-alanine amidase, putative; InterPro IPR002508; COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; KEGG: cak:Caul_2573 N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase
YP_003507332.1	KEGG: hypothetical protein; PFAM: Sporulation and spore germination
YP_003507333.1	PFAM: SMC domain protein; SMCs flexible hinge domain protein; SPTR: A1HN79 Chromosome segregation protein SMC; InterPro IPR003395:IPR010935; COGs: COG1196 Chromosome segregation ATPase; KEGG: bha:BH2487 chromosome segregation SMC protein; PFAM: RecF/RecN/SMC N terminal domain
YP_003507334.1	PFAM: protein of unknown function DUF114; SPTR: A1HPV5 Putative uncharacterized protein; InterPro IPR002825; COGs: COG0616 Periplasmic serine protease (ClpP class); KEGG: afw:Anae109_3319 hypothetical protein; PFAM: Protein of unknown function DUF114
YP_003507335.1	KEGG: afr:AFE_3115 hypothetical protein; SPTR: Q8PZC1 Conserved protein; PFAM: Protein of unknown function (DUF2495)
YP_003507336.1	PFAM: integrase family protein; integrase domain protein SAM domain protein; SPTR: A3LIJ3 Site-specific recombinase Sss; InterPro IPR004107:IPR002104; COGs: COG4974 Site-specific recombinase XerD; KEGG: mfa:Mfla_0198 tyrosine recombinase XerC subunit; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family
YP_003507338.1	PFAM: S-layer domain protein; InterPro IPR001119; KEGG: bcr:BCAH187_A3307 S-layer domain protein; SPTR: A0YS15 Putative uncharacterized protein; PFAM: S-layer homology domain
YP_003507339.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; GAF domain protein; InterPro IPR000160:IPR003018; KEGG: gme:Gmet_2721 diguanylate cyclase with GAF sensor; COGs: COG2199 FOG: GGDEF domain; SPTR: A0YHX9 PleD-like protein; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_003507340.1	TIGRFAM: histidyl-tRNA synthetase; PRIAM: Histidine--tRNA ligase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; InterPro IPR002314:IPR004154:IPR006195:IPR015807; KEGG: sfu:Sfum_3303 histidyl-tRNA synthetase; COGs: COG0124 Histidyl-tRNA synthetase; SPTR: P56194 Histidyl-tRNA synthetase; PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: histidyl-tRNA synthetase
YP_003507341.1	TIGRFAM: aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); tRNA synthetase class II (G H P and S); GAD domain protein; nucleic acid binding OB-fold tRNA/helicase-type; InterProIPR002312:IPR002314:IPR004364:IPR004115:IPR 004365:IPR006195:IPR004524; KEGG: bsu:BSU27550 aspartyl-tRNA synthetase; COGs: COG0173 Aspartyl-tRNA synthetase; SPTR: P36419 Aspartyl-tRNA synthetase; PFAM: OB-fold nucleic acid binding domain; tRNA synthetases class II (D, K and N); TIGRFAM: aspartyl-tRNA synthetase, bacterial type
YP_003507342.1	TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; InterPro IPR003719; KEGG: ecw:EcE24377A_1645 hypothetical protein; COGs: COG0384 epimerase PhzC/PhzF homolog; SPTR: Q9RUQ2 Uncharacterized isomerase DR_1330; PFAM: Phenazine biosynthesis-like protein; TIGRFAM: phenazine biosynthesis protein PhzF family
YP_003507343.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; Haloacid dehalogenase domain protein hydrolase; InterProIPR005834:IPR013200:IPR006162:IPR000150:IPR 006379; KEGG: bid:Bind_0457 Cof-like hydrolase; COGs: COG0561 hydrolase of the HAD superfamily; SPTR: A8CSL2 Cof-like hydrolase; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily; HAD-superfamily hydrolase, subfamily IIB
YP_003507344.1	TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; Haloacid dehalogenase domain protein hydrolase; InterPro IPR005834:IPR013200:IPR000150:IPR006379; KEGG: bha:BH0497 hypothetical protein; COGs: COG0561 hydrolase of the HAD superfamily; SPTR: A7V7H6 Putative uncharacterized protein; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily
YP_003507346.1	PFAM: S-adenosylmethionine decarboxylase related; SPTR: A5IJD2 S-adenosylmethionine decarboxylase proenzyme; InterPro IPR003826; COGs: COG1586 S-adenosylmethionine decarboxylase; KEGG: bba:Bd3616 spermidine synthase; PFAM: S-adenosylmethionine decarboxylase
YP_003507347.1	PFAM: Spermine synthase; SPTR: Q5SK28 Spermidine synthase; InterPro IPR001045; COGs: COG0421 Spermidine synthase; KEGG: pau:PA14_63120 hypothetical protein; PFAM: Spermine/spermidine synthase; TIGRFAM: spermidine synthase
YP_003507348.1	PFAM: DSBA oxidoreductase; SPTR: A9A1N9 DSBA oxidoreductase; InterPro IPR001853; COGs: COG1651 Protein-disulfide isomerase; KEGG: pla:Plav_0700 DsbA oxidoreductase; PFAM: DSBA-like thioredoxin domain
YP_003507349.1	TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit ClpX; PFAM: ATPase AAA-2 domain protein; zinc finger C4 domain protein; AAA ATPase central domain protein; SMART: AAA ATPase; InterProIPR010603:IPR003959:IPR013093:IPR003593:IPR 004487; KEGG: glo:Glov_1927 ATP-dependent Clp protease, ATP-binding subunit ClpX; COGs: COG1219 ATP-dependent protease Clp ATPase subunit; SPTR: Q72L14 ATP-dependent Clp protease ATP-binding subunit clpX; PFAM: ClpX C4-type zinc finger; C-terminal, D2-small domain, of ClpB protein; ATPase family associated with various cellular activities (AAA); TIGRFAM: endopeptidase Clp ATP-binding regulatory subunit (clpX)
YP_003507350.1	PRIAM: Endopeptidase Clp; PFAM: peptidase S14 ClpP; InterPro IPR001907; KEGG: gme:Gmet_1873 ATP-dependent Clp protease proteolytic subunit ClpP; COGs: COG0740 Protease subunit of ATP-dependent Clp protease; SPTR: Q5SKM8 ATP-dependent Clp protease proteolytic subunit; PFAM: Clp protease; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP
YP_003507351.1	TIGRFAM: trigger factor; PFAM: trigger factor domain; trigger factor domain protein; InterPro IPR008881:IPR008880:IPR005215; KEGG: bha:BH3053 trigger factor; COGs: COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor); SPTR: Q72L16 Trigger factor; PFAM: Bacterial trigger factor protein (TF); Bacterial trigger factor protein (TF) C-terminus; TIGRFAM: trigger factor
YP_003507352.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: A3J3Z7 Uncharacterized NAD(FAD)-dependent dehydrogenase; InterPro IPR013027; COGs: COG1252 NADH dehydrogenase FAD-containing subunit; KEGG: hch:HCH_04312 uncharacterized NAD(FAD)-dependent dehydrogenase; PFAM: Pyridine nucleotide-disulphide oxidoreductase
YP_003507353.1	PFAM: regulatory protein TetR; SPTR: A6ERY3 Transcriptional regulator, TetR family protein; InterPro IPR001647; COGs: COG1309 Transcriptional regulator; KEGG: sit:TM1040_2162 TetR family transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family
YP_003507355.1	TIGRFAM: uncharacterized peroxidase-related enzyme; alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; InterPro IPR003779:IPR004675:IPR010195; KEGG: mag:amb3603 hypothetical protein; COGs: COG2128 conserved hypothetical protein; SPTR: A3RR87 Putative uncharacterized protein; PFAM: Carboxymuconolactone decarboxylase family; TIGRFAM: uncharacterized peroxidase-related enzyme; alkylhydroperoxidase AhpD family core domain
YP_003507356.1	KEGG: ade:Adeh_1832 methylmalonyl-CoA mutase; COGs: COG2185 Methylmalonyl-CoA mutase C-terminal domain/subunit (cobalamin-binding); SPTR: A8DJV5 Methylmalonyl-CoA mutase; PFAM: cobalamin B12-binding domain protein; InterPro IPR006158:IPR006159; PFAM: B12 binding domain; TIGRFAM: methylmalonyl-CoA mutase C-terminal domain
YP_003507357.1	KEGG: mxa:MXAN_4249 hypothetical protein; PFAM: Polyketide cyclase / dehydrase and lipid transport
YP_003507358.1	TIGRFAM: gid protein; PRIAM:Methylenetetrahydrofolate--tRNA-(uracil-5-)-m ethyltransferase(FADH(2)-oxidizing); PFAM: glucose-inhibited division protein A; InterPro IPR013027:IPR002218:IPR004417; KEGG: gsu:GSU2547 tRNA (uracil-5-)-methyltransferase Gid; COGs: COG1206 NAD(FAD)-utilizing enzyme possibly involved in translation; SPTR: Q72IQ5 Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase trmFO; PFAM: Glucose inhibited division protein A; TIGRFAM: tRNA:m(5)U-54 methyltransferase
YP_003507360.1	TIGRFAM: phosphoglucosamine mutase; PRIAM: Phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; InterProIPR005841:IPR005844:IPR005846:IPR005843:IPR 005845:IPR016066:IPR006352; KEGG: abo:ABO_0324 phosphoglucosamine mutase; COGs: COG1109 Phosphomannomutase; SPTR: Q72JS7 Phosphoglucosamine mutase; PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; TIGRFAM: phosphoglucosamine mutase
YP_003507361.1	PFAM: thioesterase superfamily protein; SPTR: A1HQF0 Thioesterase superfamily protein; InterPro IPR006683:IPR006684; COGs: COG0824 thioesterase; KEGG: pca:Pcar_1492 putative thioesterase; PFAM: Thioesterase superfamily; TIGRFAM: conserved hypothetical protein TIGR00051
YP_003507362.1	PFAM: aminotransferase class-III; SPTR: A1HTU7 Acetylornithine and succinylornithine aminotransferases; InterPro IPR005814; COGs: COG4992 Ornithine/acetylornithine aminotransferase; KEGG: ecm:EcSMS35_3367 putrescine aminotransferase; PFAM: Aminotransferase class-III
YP_003507363.1	TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonuclease; PRIAM: Exoribonuclease II; PFAM: ribonuclease II; Ribonuclease B OB region domain; RNA binding S1 domain protein; InterProIPR003029:IPR013223:IPR001900:IPR004476:IPR 011805; SPTR: O32231 Ribonuclease R; KEGG: bha:BH3553 ribonuclease R; COGs: COG0557 Exoribonuclease R; SMART: RNA binding S1 domain protein; PFAM: RNB domain; Ribonuclease B OB domain; S1 RNA binding domain; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases; ribonuclease R
YP_003507364.1	PFAM: SCP-like extracellular; SPTR: A3KR84 Putative uncharacterized protein; InterPro IPR014044; COGs: COG2340 Uncharacterized protein with SCP/PR1 domains; KEGG: ppw:PputW619_2482 SCP-like extracellular; PFAM: SCP-like extracellular protein
YP_003507365.1	TIGRFAM: dephospho-CoA kinase; PRIAM: Dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; InterPro IPR001977; KEGG: afw:Anae109_2675 dephospho-CoA kinase; COGs: COG0237 Dephospho-CoA kinase; SPTR: Q56416 Dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase
YP_003507366.1	PFAM: periplasmic binding protein; SPTR: Q96YH0 Putative uncharacterized protein ST2201; InterPro IPR002491; COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; KEGG: afw:Anae109_3569 periplasmic binding protein; PFAM: Periplasmic binding protein
YP_003507367.1	PFAM: Aldose 1-epimerase; SPTR: A7CG33 Aldose 1-epimerase; InterPro IPR008183; COGs: COG2017 Galactose mutarotase; KEGG: gdi:GDI2105 putative aldose 1-epimerase (mutarotase); PFAM: Aldose 1-epimerase
YP_003507368.1	PFAM: ribosomal L11 methyltransferase; putative RNA methylase; SPTR: Q84BQ9 Ribosomal protein L11 methyltransferase; InterPro IPR010456:IPR000241; COGs: COG2264 Ribosomal protein L11 methylase; KEGG: gsu:GSU0447 ribosomal protein L11 methyltransferase; PFAM: Methyltransferase domain; Ribosomal protein L11 methyltransferase (PrmA); TIGRFAM: ribosomal protein L11 methyltransferase
YP_003507369.1	SPTR: A7VNI9 Putative uncharacterized protein; KEGG: pfl:PFL_5805 hypothetical protein; PFAM: protein of unknown function DUF558; InterPro IPR006700; COGs: COG1385 conserved hypothetical protein; PFAM: RNA methyltransferase; TIGRFAM: RNA methyltransferase, RsmE family
YP_003507371.1	PFAM: Auxin Efflux Carrier; SPTR: A0YJA8 Putative uncharacterized protein; InterPro IPR004776; COGs: COG0679 permease; KEGG: ppw:PputW619_2492 auxin efflux carrier; PFAM: Membrane transport protein
YP_003507372.1	SPTR: A6CFW7 Putative uncharacterized protein
YP_003507373.1	TIGRFAM: amidohydrolase; PRIAM: Aminoacylase; PFAM: peptidase M20; peptidase dimerisation domain protein; InterPro IPR011650:IPR002933:IPR010168; KEGG: bha:BH1613 N-acyl-L-amino acid amidohydrolase; COGs: COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; SPTR: A1HQW7 Amidohydrolase; PFAM: Peptidase family M20/M25/M40; TIGRFAM: amidohydrolase
YP_003507374.1	PFAM: AMP-dependent synthetase and ligase; SPTR: A3ICP0 Long-chain fatty-acid-CoA ligase; InterPro IPR000873; COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; KEGG: bha:BH3104 long-chain fatty-acid-CoA ligase; PFAM: AMP-binding enzyme
YP_003507375.1	PRIAM: Cysteine desulfurase; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; InterPro IPR001597:IPR000192; KEGG: gur:Gura_1493 aminotransferase, class V; COGs: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; SPTR: A0B7I6 Aminotransferase, class V; PFAM: Aminotransferase class-V
YP_003507376.1	TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; InterPro IPR000944; KEGG: dvm:DvMF_2591 transcriptional regulator, BadM/Rrf2 family; COGs: COG1959 transcriptional regulator protein; SPTR: A6NX24 Putative uncharacterized protein; PFAM: Transcriptional regulator; TIGRFAM: rrf2 family protein (putative transcriptional regulator)
YP_003507377.1	PFAM: ABC-3 protein; SPTR: A7V817 Putative uncharacterized protein; InterPro IPR001626; COGs: COG1108 ABC-type Mn2+/Zn2+ transport systems permease components; KEGG: sat:SYN_00956 ABC-type Mn2+/Zn2+ transport systems, permease component; PFAM: ABC 3 transport family
YP_003507378.1	PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593; KEGG: bha:BH1389 ABC transporter ATP-binding protein; COGs: COG1121 ABC-type Mn/Zn transport systems ATPase component; SPTR: A0B862 ABC transporter related; PFAM: ABC transporter
YP_003507379.1	PFAM: peptidase M16 domain protein; SPTR: A0ZDL6 Peptidase M16-like protein; InterPro IPR011765:IPR007863; COGs: COG0612 Zn-dependent peptidase; KEGG: gur:Gura_3630 peptidase M16 domain-containing protein; PFAM: Insulinase (Peptidase family M16); Peptidase M16 inactive domain
YP_003507380.1	PFAM: peptidase M16 domain protein; SPTR: A0YXX3 Peptidase M16-like protein; InterPro IPR011765:IPR007863:IPR001431; COGs: COG0612 Zn-dependent peptidase; KEGG: gsu:GSU0927 M16 family peptidase; PFAM: Insulinase (Peptidase family M16); Peptidase M16 inactive domain
YP_003507382.1	PRIAM: Cytochrome-c peroxidase; PFAM: Di-haem cytochrome c peroxidase; InterPro IPR004852:IPR009056; KEGG: scl:sce3211 hypothetical protein; COGs: COG1858 Cytochrome c peroxidase; SPTR: A6CFU9 Cytochrome-c peroxidase; PFAM: Di-haem cytochrome c peroxidase
YP_003507383.1	KEGG: mxa:MXAN_0976 putative lipoprotein; SPTR: A7C4A0 Lipoprotein
YP_003507384.1	PFAM: copper resistance D domain protein; SPTR: A5A697 Putative copper export protein YcnJ; InterPro IPR008457; COGs: COG1276 Putative copper export protein; KEGG: tgr:Tgr7_1206 copper resistance D domain-containing protein; PFAM: Copper resistance protein D
YP_003507385.1	PFAM: copper resistance protein CopC; InterPro IPR007348; KEGG: ecr:ECIAI1_1913 hypothetical protein; SPTR: A4MG87 Putative copper resistance protein CopC; PFAM: Copper resistance protein CopC
YP_003507386.1	KEGG: Cu resistance protein ; K07156; PFAM: Copper resistance protein CopC
YP_003507389.1	SPTR: A5XYP3 Bacterial transferase hexapeptide repeat protein; InterPro IPR001451; COGs: COG0663 Carbonic anhydrase/acetyltransferase isoleucine patch superfamily; KEGG: lch:Lcho_1164 hexapaptide repeat-containing transferase; PFAM: Bacterial transferase hexapeptide (three repeats)
YP_003507390.1	PFAM: NUDIX hydrolase; SPTR: A5Z4K9 Putative uncharacterized protein; InterPro IPR000086; COGs: COG1051 ADP-ribose pyrophosphatase; KEGG: GL16479 gene product from transcript GL16479-RA; PFAM: NUDIX domain
YP_003507391.1	PFAM: protein of unknown function DUF1028; Putative peptidoglycan binding; SPTR: A3MSI0 Putative uncharacterized protein; InterPro IPR010430:IPR014927; COGs: COG3342 conserved hypothetical protein; KEGG: afw:Anae109_1192 hypothetical protein; PFAM: Putative peptidoglycan binding domain; Family of unknown function (DUF1028)
YP_003507392.1	PFAM: protein of unknown function DUF456; SPTR: A3IBE3 Putative uncharacterized protein; InterPro IPR007403; COGs: COG2839 conserved hypothetical protein; KEGG: dol:Dole_1181 hypothetical protein; PFAM: Protein of unknown function (DUF456)
YP_003507393.1	PFAM: protein of unknown function DUF502; SPTR: A3V633 Putative uncharacterized protein; InterPro IPR007462; COGs: COG2928 conserved hypothetical protein; KEGG: aav:Aave_3638 protein of unknown function DUF502; PFAM: Protein of unknown function (DUF502)
YP_003507395.1	PFAM: acetyl-CoA hydrolase/transferase; SPTR: Q7Z0V8 Acetyl coenzyme A-transferase (Fragment); InterPro IPR003702; COGs: COG0427 Acetyl-CoA hydrolase; KEGG: afw:Anae109_1010 acetyl-CoA hydrolase/transferase; PFAM: Acetyl-CoA hydrolase/transferase N-terminal domain
YP_003507397.1	KEGG: afw:Anae109_2693 DNA topoisomerase I; COGs: COG0550 Topoisomerase IA; InterProIPR000380:IPR013497:IPR006171:IPR013498:IPR 003601:IPR006154:IPR003602:IPR005733; SPTR: A7VXH3 DNA topoisomerase; PRIAM: DNA topoisomerase; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein; DNA topoisomerase type IA zn finger domain protein; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain protein; TIGRFAM: DNA topoisomerase I; PFAM: Topoisomerase DNA binding C4 zinc finger; Toprim domain; DNA topoisomerase; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type; DNA topoisomerase I, bacterial
YP_003507399.1	PFAM: DNA polymerase beta domain protein region; InterPro IPR002934; KEGG: rce:RC1_2301 nucleotidyltransferase, putative; SPTR: A7I574 DNA polymerase, beta domain protein region; PFAM: Nucleotidyltransferase domain
YP_003507400.1	PFAM: HEPN domain protein; SMART: HEPN domain protein; InterPro IPR007842; KEGG: rpc:RPC_4902 hypothetical protein; COGs: COG2250 conserved hypothetical protein related to C-terminal domain of eukaryotic chaperone SACSIN; SPTR: A7I575 HEPN domain protein; PFAM: HEPN domain
YP_003507401.1	PFAM: DNA polymerase beta domain protein region; InterPro IPR002934; KEGG: gur:Gura_1725 DNA polymerase beta subunit; SPTR: A3YY90 Putative uncharacterized protein; PFAM: Nucleotidyltransferase domain
YP_003507402.1	PFAM: HEPN domain protein; SMART: HEPN domain protein; SPTR: Q2FRB1 HEPN; KEGG: gur:Gura_0237 HEPN domain-containing protein; COGs: COG2250 conserved hypothetical protein related to C-terminal domain of eukaryotic chaperone SACSIN; InterPro IPR007842; PFAM: HEPN domain
YP_003507403.1	PFAM: transcription factor CarD; TRCF domain protein; helicase domain protein; DEAD/DEAH box helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicase ; helicase domain protein; InterProIPR003711:IPR005118:IPR001650:IPR011545:IPR 006935:IPR014001:IPR014021; KEGG: bha:BH0069 transcription-repair coupling factor (TrcF); COGs: COG1197 Transcription-repair coupling factor (superfamily II helicase); SPTR: A1HRU9 Transcription-repair coupling factor; PFAM: TRCF domain; Helicase conserved C-terminal domain; DEAD/DEAH box helicase; CarD-like/TRCF domain; TIGRFAM: transcription-repair coupling factor (mfd)
YP_003507404.1	PFAM: CopG domain protein DNA-binding domain protein; InterPro IPR002145; KEGG: gur:Gura_3165 CopG/DNA-binding domain-containing protein; PFAM: Ribbon-helix-helix protein, copG family
YP_003507405.1	KEGG: gur:Gura_3164 PilT domain-containing protein
YP_003507406.1	SPTR: A3IQA8 Putative uncharacterized protein; COGs: COG4370 conserved hypothetical protein; KEGG: hypothetical protein; TIGRFAM: conserved hypothetical protein
YP_003507407.1	PFAM: glycosyl transferase family 2; SPTR: A5ZFA0 Putative uncharacterized protein; InterPro IPR001173; COGs: COG1216 glycosyltransferase; KEGG: swi:Swit_4543 glycosyl transferase family protein; PFAM: Glycosyl transferase family 2
YP_003507408.1	PFAM: major facilitator superfamily MFS_1; InterPro IPR011701:IPR007114; KEGG: mmr:Mmar10_3032 major facilitator transporter; SPTR: Q49WE5 Probable glycolipid permease ltaA; PFAM: Major Facilitator Superfamily
YP_003507409.1	TIGRFAM: fumarate hydratase, class II; PFAM: fumarate lyase; InterPro IPR003031:IPR000362:IPR005677; KEGG: glo:Glov_1071 fumarate hydratase, class II; COGs: COG0114 Fumarase; SPTR: Q9RR70 Fumarate hydratase class II; PFAM: Lyase; Fumarase C C-terminus; TIGRFAM: fumarate hydratase, class II
YP_003507410.1	PRIAM: Superoxide dismutase; PFAM: manganese and iron superoxide dismutase; InterPro IPR001189; KEGG: bha:BH1409 superoxide dismutase; COGs: COG0605 Superoxide dismutase; SPTR: P61503 Superoxide dismutase [Mn]; PFAM: Iron/manganese superoxide dismutases, alpha-hairpin domain; Iron/manganese superoxide dismutases, C-terminal domain
YP_003507411.1	SPTR: B6N0D9 Putative uncharacterized protein; InterPro IPR001412; KEGG: similar to hCG2041257
YP_003507412.1	InterPro IPR011717:IPR005158:IPR013026; PFAM: transcriptional activator domain; Tetratricopeptide TPR_4; COGs: COG3629 DNA-binding transcriptional activator of the SARP family; KEGG: pol:Bpro_1406 transcriptional activator domain; SPTR: A3KJD2 Putative LuxR-family regulator; PFAM: Bacterial transcriptional activator domain
YP_003507413.1	PFAM: Indole-3-glycerol phosphate synthase; SPTR: Q9RUG0 Indole-3-glycerol phosphate synthase; PRIAM: Indole-3-glycerol-phosphate synthase; COGs: COG0134 Indole-3-glycerol phosphate synthase; InterPro IPR013798:IPR001468; KEGG: scl:sce1101 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; PFAM: Indole-3-glycerol phosphate synthase
YP_003507414.1	PFAM: Patatin; SPTR: A6CN36 Patatin-like phospholipase; InterPro IPR002641; COGs: COG1752 esterase of the alpha-beta hydrolase superfamily; KEGG: bcy:Bcer98_2630 patatin; PFAM: Patatin-like phospholipase
YP_003507415.1	TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; InterPro IPR010656:IPR011853; KEGG: dal:Dalk_1208 TRAP transporter, 4TM/12TM fusion protein; COGs: COG4666 TRAP-type uncharacterized transport system fused permease components; SPTR: A6DEB9 Putative uncharacterized protein; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein
YP_003507416.1	TIGRFAM: TRAP transporter solute receptor, TAXI family; SPTR: P0A3T2 31 kDa immunogenic protein; InterPro IPR011852; COGs: COG2358 TRAP-type uncharacterized transport system periplasmic component; KEGG: oan:Oant_2429 TRAP transporter solute receptor, TAXI family; TIGRFAM: TRAP transporter solute receptor, TAXI family
YP_003507417.1	PFAM: (Uracil-5)-methyltransferase; Protein of unknown function methylase putative; SPTR: Q72IZ3 Uncharacterized RNA methyltransferase TT_C0988; InterPro IPR016065:IPR010280:IPR002792; COGs: COG2265 SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase; KEGG: sus:Acid_5841 23S rRNA (uracil-5-)-methyltransferase RumA; PFAM: tRNA (Uracil-5-)-methyltransferase
YP_003507418.1	TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis protein; InterPro IPR006062:IPR004651; KEGG: sus:Acid_3850 imidazole glycerol phosphate synthase subunit HisF; COGs: COG0107 Imidazoleglycerol-phosphate synthase; SPTR: P62453 Imidazole glycerol phosphate synthase subunit hisF; PFAM: Histidine biosynthesis protein; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit
YP_003507419.1	TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; MazG nucleotide pyrophosphohydrolase; InterPro IPR002496:IPR008179:IPR004518; KEGG: bsu:BSU34860 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; COGs: COG0139 Phosphoribosyl-AMP cyclohydrolase; SPTR: P62350 Histidine biosynthesis bifunctional protein hisIE; PFAM: MazG nucleotide pyrophosphohydrolase domain; Phosphoribosyl-AMP cyclohydrolase; TIGRFAM: phosphoribosyl-ATP pyrophosphohydrolase
YP_003507420.1	SPTR: A1HRW8 Fructose-1,6-bisphosphatase, class II; KEGG: aba:Acid345_0609 fructose 1,6-bisphosphatase II; COGs: COG1494 Fructose-1 6-bisphosphatase/sedoheptulose 1 7-bisphosphatase and related protein; PFAM: GlpX family protein; TIGRFAM: fructose-1,6-bisphosphatase, class II; PRIAM: Fructose-bisphosphatase; InterPro IPR004464; PFAM: Bacterial fructose-1,6-bisphosphatase, glpX-encoded; TIGRFAM: fructose-1,6-bisphosphatase, class II
YP_003507421.1	InterPro IPR000911; KEGG: hypothetical protein
YP_003507422.1	TIGRFAM: aspartate-semialdehyde dehydrogenase; PRIAM: Aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase dimerisation region; Semialdehyde dehydrogenase NAD - binding; InterPro IPR000534:IPR012280:IPR005986; KEGG: hypothetical protein; COGs: COG0136 Aspartate-semialdehyde dehydrogenase; SPTR: A6PLE1 Aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: aspartate-semialdehyde dehydrogenase (peptidoglycan organisms); aspartate-semialdehyde dehydrogenase, gamma-proteobacterial
YP_003507423.1	PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; SPTR: A1HPE8 Penicillin-binding protein, 1A family; InterPro IPR001460:IPR001264:IPR000568; COGs: COG0744 Membrane carboxypeptidase (penicillin-binding protein); KEGG: sat:SYN_00304 multimodular transpeptidase-transglycosylase; PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase
YP_003507424.1	PFAM: response regulator receiver; SMART: response regulator receiver; InterPro IPR001789:IPR000238; KEGG: pst:PSPTO_1278 sensory box protein/response regulator; SPTR: A8RVE9 Putative uncharacterized protein; PFAM: Response regulator receiver domain
YP_003507426.1	PFAM: regulatory protein AsnC/Lrp family; regulatory protein MarR; SMART: regulatory protein AsnC/Lrp family; InterPro IPR000485:IPR000835; KEGG: rce:RC1_0443 transcriptional regulator, AsnC family protein; COGs: COG1522 Transcriptional regulators; SPTR: A2VYP6 Regulatory proteins, AsnC/Lrp; PFAM: MarR family; AsnC family
YP_003507427.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; InterPro IPR001450:IPR017900; KEGG: eba:ebA6418 hypothetical protein; SPTR: B1YDY5 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S binding domain
YP_003507428.1	TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; chorismate mutase; PFAM: DAHP synthetase I/KDSA; Chorismate mutase; InterPro IPR006218:IPR002701:IPR010954:IPR006268; KEGG: bcy:Bcer98_2014 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; COGs: COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; SPTR: A7KJJ4 DAHP synthetase-chorismate mutase; PFAM: DAHP synthetase I family; Chorismate mutase type II; TIGRFAM: chorismate mutase domain of gram positive AroA protein; phospho-2-dehydro-3-deoxyheptonate aldolase
YP_003507429.1	TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; InterPro IPR002033; KEGG: abu:Abu_1256 sec-independent protein secretion pathway component TatC; COGs: COG0805 Sec-independent protein secretion pathway component TatC; SPTR: A6DC14 Putative uncharacterized protein; PFAM: Sec-independent protein translocase protein (TatC); TIGRFAM: Twin arginine targeting (Tat) protein translocase TatC
YP_003507430.1	TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; InterPro IPR003369:IPR006312; KEGG: dol:Dole_3172 twin arginine-targeting protein translocase; COGs: COG1826 Sec-independent protein secretion pathway components; SPTR: Q110N2 Sec-independent protein translocase protein tatA/E homolog; PFAM: mttA/Hcf106 family; TIGRFAM: twin arginine-targeting protein translocase TatB; twin arginine-targeting protein translocase, TatA/E family
YP_003507431.1	PFAM: inner-membrane translocator; SPTR: A6CQ58 Sugar ABC transporter (Permease); InterPro IPR001851; COGs: COG1079 ABC-type transport system permease component; KEGG: bcy:Bcer98_2440 inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component
YP_003507432.1	PFAM: inner-membrane translocator; SPTR: A3SEW7 Sugar ABC transporter, permease protein; InterPro IPR001851:IPR001120; COGs: COG4603 ABC-type uncharacterized transport system permease component; KEGG: atc:AGR_C_205 sugar ABC transporter, permease protein; PFAM: Branched-chain amino acid transport system / permease component
YP_003507433.1	KEGG: sus:Acid_7345 demethylmenaquinone methyltransferase; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; SPTR: Q72HI4 Menaquinone biosynthesis methyltransferase ubiE; TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; putative RNA methylase; InterPro IPR013216:IPR004033:IPR013217:IPR000241; PFAM: ubiE/COQ5 methyltransferase family; TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases
YP_003507435.1	PFAM: peptidylprolyl isomerase FKBP-type; SPTR: A4BDG9 Peptidyl-prolyl cis-trans isomerase; InterPro IPR001179; COGs: COG1047 FKBP-type peptidyl-prolyl cis-trans isomerase 2; KEGG: afw:Anae109_2549 peptidylprolyl isomerase FKBP-type; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase
YP_003507436.1	TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; InterPro IPR001926:IPR001216:IPR005856:IPR005859; KEGG: pca:Pcar_2430 cysteine synthase A; COGs: COG0031 Cysteine synthase; SPTR: Q8CMT6 Cysteine synthase; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: cysteine synthase A; cysteine synthases
YP_003507437.1	TIGRFAM: DNA repair protein RadA; SMART: AAA ATPase; InterPro IPR001984:IPR004504:IPR003593; KEGG: ppd:Ppro_0422 DNA repair protein RadA; COGs: COG1066 ATP-dependent serine protease; SPTR: A6BKM8 DNA repair protein radA; TIGRFAM: DNA repair protein RadA
YP_003507438.1	PFAM: PilT protein domain protein; deoxyribonuclease/rho motif-related TRAM; SMART: Nucleotide binding protein PINc; InterPro IPR002716:IPR002792:IPR006596; KEGG: sfu:Sfum_3656 PilT protein domain protein; COGs: COG4956 Integral membrane protein (PIN domain superfamily); SPTR: Q92F41 Uncharacterized protein Lin0266; PFAM: PIN domain
YP_003507439.1	PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; InterPro IPR001440:IPR013026; KEGG: psa:PST_3483 transcriptional regulator MalT; COGs: COG2909 ATP-dependent transcriptional regulator protein; SPTR: A6CQL5 Transcriptional regulator; PFAM: Tetratricopeptide repeat
YP_003507440.1	COGs: COG3876 conserved hypothetical protein; InterPro IPR008302; KEGG: ade:Adeh_2411 hypothetical protein; SPTR: A2U5C6 Uncharacterised conserved protein UCP016719; PFAM: conserved hypothetical protein; PFAM: Protein of unknown function (DUF1343)
YP_003507441.1	PFAM: extracellular solute-binding protein family 5; SPTR: A0YVS6 Periplasmic oligopeptide-binding protein of oligopeptide ABC transporter; InterPro IPR000914:IPR006311; COGs: COG0747 ABC-type dipeptide transport system periplasmic component; KEGG: sus:Acid_3456 extracellular solute-binding protein; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle
YP_003507442.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A0NLS8 Probable oligopeptide ABC transporter, permease protein; InterPro IPR000515; COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; KEGG: mno:Mnod_7230 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003507443.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A0NLS7 Oligopeptide ABC transporter, permease protein; InterPro IPR000515; COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; KEGG: ABC transporter membrane spanning protein (oligopeptide) ; K02033 peptide/nickel transport system permease protein; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003507444.1	PFAM: extracellular solute-binding protein family 5; SPTR: A0ZKN6 Periplasmic oligopeptide-binding protein of oligopeptide ABC transporter; InterPro IPR000914; COGs: COG0747 ABC-type dipeptide transport system periplasmic component; KEGG: sus:Acid_3456 extracellular solute-binding protein; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle
YP_003507445.1	PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: A3KY27 Putative uncharacterized protein; KEGG: pde:Pden_2475 UbiC transcription regulator-associated domain protein; COGs: COG2188 Transcriptional regulators; InterPro IPR000524:IPR011663; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain
YP_003507447.1	InterPro IPR005653; PFAM: OstA family protein; PFAM: OstA-like protein
YP_003507448.1	KEGG: sde:Sde_3177 alpha amylase domain-containing protein
YP_003507449.1	KEGG: scl:sce7755 sugar ABC transporter, ATP-binding protein; COGs: COG3845 ABC-type uncharacterized transport systems ATPase components; SPTR: Q5JF69 ABC-type transport system, ATPase component; InterPro IPR003439:IPR003593:IPR017871; PFAM: ABC transporter related; SMART: AAA ATPase; PFAM: ABC transporter
YP_003507450.1	COGs: COG1744 Uncharacterized ABC-type transport system periplasmic component/surface lipoprotein; KEGG: bba:Bd0445 ABC-type transport system substrate-binding protein; SPTR: A3YAK2 Putative uncharacterized protein; PFAM: basic membrane lipoprotein; InterPro IPR003760; PFAM: Basic membrane protein
YP_003507451.1	TIGRFAM: DNA ligase, NAD-dependent; PRIAM: DNA ligase (NAD(+)); PFAM: NAD-dependent DNA ligase adenylation; BRCT domain protein; helix-hairpin-helix motif; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; SMART: NAD-dependent DNA ligase ; BRCT domain protein; Helix-hairpin-helix DNA-binding class 1; SPTR: Q9ZFY8 DNA ligase; KEGG: mca:MCA2438 DNA ligase, NAD-dependent; COGs: COG0272 NAD-dependent DNA ligase (contains BRCT domain type II); InterProIPR001357:IPR000445:IPR004149:IPR013839:IPR 004150:IPR003583:IPR013840:IPR001679; PFAM: BRCA1 C Terminus (BRCT) domain; NAD-dependent DNA ligase adenylation domain; Helix-hairpin-helix motif; NAD-dependent DNA ligase C4 zinc finger domain; NAD-dependent DNA ligase OB-fold domain; TIGRFAM: DNA ligase, NAD-dependent
YP_003507452.1	PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; SPTR: A3IBZ3 3-oxoacyl-(Acyl carrier protein) synthase; KEGG: bcz:BCZK1748 hypothetical protein; COGs: COG0332 3-oxoacyl-(acyl-carrier-protein); InterPro IPR013751:IPR013747; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
YP_003507453.1	COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; KEGG: mxa:MXAN_0225 putative long-chain-fatty-acid--CoA ligase; SPTR: A6G410 Putative long-chain-fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase and ligase; InterPro IPR000873; PFAM: AMP-binding enzyme
YP_003507454.1	SPTR: A3LHT7 Putative uncharacterized protein; PFAM: alpha/beta hydrolase fold; KEGG: xau:Xaut_1118 3-oxoadipate enol-lactonase; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR003089:IPR000639:IPR000073; PFAM: alpha/beta hydrolase fold
YP_003507455.1	SPTR: A5XVH7 Phosphate acetyl/butyryl transferase family protein; PFAM: MaoC domain protein dehydratase; KEGG: shl:Shal_2740 dehydratase; InterPro IPR002539; COGs: COG2030 Acyl dehydratase; PFAM: MaoC like domain
YP_003507456.1	PFAM: Extracellular ligand-binding receptor; SPTR: A9U771 Predicted protein (Fragment); COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; KEGG: hypothetical protein; InterPro IPR001828; PFAM: Receptor family ligand binding region
YP_003507457.1	PFAM: inner-membrane translocator; InterPro IPR001851; COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; KEGG: acp:A2cp1_1533 inner-membrane translocator; SPTR: A3U1C5 Amino acid ABC transporter permease protein; PFAM: Branched-chain amino acid transport system / permease component
YP_003507458.1	InterPro IPR001851; COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; KEGG: xau:Xaut_1564 inner-membrane translocator; SPTR: A7D6X4 Inner-membrane translocator; PFAM: inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component
YP_003507459.1	SMART: AAA ATPase; SPTR: A3MUF4 ABC transporter related; KEGG: bja:blr2925 amino acid ABC transporter ATP-binding protein; COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003439:IPR003593; PFAM: ABC transporter related; PFAM: ABC transporter
YP_003507460.1	SMART: AAA ATPase; SPTR: Q9Y8V8 Branched-chain amino acid ABC transporter, ATP binding protein; KEGG: bav:BAV0486 branched-chain amino acid ABC transporter, ATP-binding protein; COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003439:IPR003593:IPR017871; PFAM: ABC transporter related; PFAM: ABC transporter
YP_003507461.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; SPTR: A4AHB8 Putative short chain dehydrogenase; TIGRFAM: 3-hydroxybutyrate dehydrogenase; KEGG: csa:Csal_1825 3-hydroxybutyrate dehydrogenase; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterProIPR002347:IPR002424:IPR002198:IPR013968:IPR 011294; PFAM: short chain dehydrogenase; TIGRFAM: 3-hydroxybutyrate dehydrogenase
YP_003507462.1	PFAM: DNA primase catalytic core domain; zinc finger CHC2-family protein; TOPRIM domain protein; TIGRFAM: DNA primase; SMART: zinc finger CHC2-family protein; Toprim sub domain protein; InterProIPR013264:IPR002694:IPR006171:IPR006154:IPR 006295; COGs: COG0358 DNA primase; KEGG: gbm:Gbem_3695 DNA primase; SPTR: Q9RWR5 DNA primase; PFAM: Toprim domain; CHC2 zinc finger; DNA primase catalytic core, N-terminal domain; TIGRFAM: DNA primase, catalytic core
YP_003507463.1	COGs: COG2114 Adenylate cyclase family 3 (some protein contain HAMP domain); KEGG: bph:Bphy_4588 TPR repeat-containing adenylate/guanylate cyclase; SPTR: A0NZG5 Putative adenylate cyclase; PFAM: Tetratricopeptide TPR_4; InterPro IPR011717:IPR001054
YP_003507465.1	KEGG: dds:Ddes_0611 outer membrane protein assembly complex, YaeT protein; SPTR: A1HRG2 Surface antigen (D15); PFAM: surface antigen (D15); surface antigen variable number repeat protein; COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR000184:IPR010827; PFAM: Surface antigen; Surface antigen variable number repeat; TIGRFAM: outer membrane protein assembly complex, YaeT protein
YP_003507466.1	PFAM: protein of unknown function DUF490; KEGG: xcv:XCV1861 filamentous hemagglutinin-like protein; InterPro IPR007452; PFAM: Family of unknown function (DUF490)
YP_003507467.1	PFAM: acylphosphatase; SPTR: Q5SKS6 Acylphosphatase; KEGG: mca:MCA0713 acylphosphatase; COGs: COG1254 Acylphosphatase; InterPro IPR001792; PFAM: Acylphosphatase
YP_003507468.1	TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; InterPro IPR006073:IPR002917:IPR016496; COGs: COG2262 GTPase; KEGG: afw:Anae109_0218 GTP-binding protein HSR1-related; SPTR: A1HMU1 Small GTP-binding protein; PFAM: GTPase of unknown function; TIGRFAM: GTP-binding protein HflX
YP_003507469.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; COGs: COG0546 phosphatase; KEGG: abo:ABO_1684 phosphoglycolate phosphatase PGP; SPTR: A6B157 HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; InterPro IPR005834:IPR006402:IPR006439; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
YP_003507470.1	PFAM: protein of unknown function DUF218; SPTR: A1HPH0 Putative uncharacterized protein; KEGG: xop:PXO_03633 hypothetical protein; COGs: COG2949 Uncharacterized membrane protein; InterPro IPR003848; PFAM: DUF218 domain
YP_003507471.1	PFAM: DivIVA family protein; InterPro IPR007793; KEGG: bcy:Bcer98_2545 DivIVA family protein; SPTR: A2UBK1 DivIVA; PFAM: DivIVA protein; TIGRFAM: DivIVA domain
YP_003507472.1	SPTR: A0NN33 Periplasmic binding protein/LacI transcriptional regulator; COGs: COG1879 ABC-type sugar transport system periplasmic component; KEGG: sugar ABC transporter
YP_003507473.1	PFAM: inner-membrane translocator; SPTR: A5XNW0 ABC transporter, carbohydrate uptake transporter-2 (CUT2) family, permease protein; InterPro IPR001851; COGs: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems permease components; KEGG: mlo:mlr2441 permease protein of sugar ABC transporter; PFAM: Branched-chain amino acid transport system / permease component
YP_003507474.1	PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593; KEGG: mlo:mlr2442 ATP-binding protein of sugar ABC transporter; COGs: COG1129 ABC-type sugar transport system ATPase component; SPTR: A8KML0 ABC transporter, carbohydrate uptake transporter-2 (CUT2) family, ATP-binding protein; PFAM: ABC transporter
YP_003507475.1	PFAM: oxidoreductase domain protein; Oxidoreductase domain; SPTR: P40332 Uncharacterized oxidoreductase yisS; InterPro IPR000683:IPR004104; COGs: COG0673 dehydrogenase and related protein; KEGG: bsu:BSU10850 hypothetical protein; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Oxidoreductase family, C-terminal alpha/beta domain
YP_003507476.1	PFAM: thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein TPP binding domain protein; SPTR: A0AE57 Putative acetolactate synthase; InterPro IPR012000:IPR011766:IPR012001:IPR000399; COGs: COG3962 Acetolactate synthase; KEGG: sus:Acid_1483 thiamine pyrophosphate binding domain-containing protein; PFAM: Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
YP_003507477.1	PRIAM: Myo-inosose-2 dehydratase; PFAM: Xylose isomerase domain protein TIM barrel; InterPro IPR012307; KEGG: sus:Acid_1484 xylose isomerase domain-containing protein; COGs: COG1082 Sugar phosphate isomerase/epimerase; SPTR: A3JUB5 Xylose isomerase-like protein; PFAM: Xylose isomerase-like TIM barrel
YP_003507478.1	PFAM: PfkB domain protein; SPTR: A3X4B5 IolC myo-catabolism protein; InterPro IPR011611:IPR002173; COGs: COG0524 Sugar kinase ribokinase family; KEGG: lpf:lpl1617 hypothetical protein; PFAM: pfkB family carbohydrate kinase
YP_003507479.1	PFAM: Xylose isomerase domain protein TIM barrel; SPTR: A3RVG2 Putative uncharacterized protein; InterPro IPR012307; COGs: COG1082 Sugar phosphate isomerase/epimerase; KEGG: sme:SMa1353 putative epimerase; PFAM: Xylose isomerase-like TIM barrel
YP_003507480.1	PFAM: oxidoreductase domain protein; Oxidoreductase domain; SPTR: A3RVG3 Putative uncharacterized protein; InterPro IPR000683:IPR004104; COGs: COG0673 dehydrogenase and related protein; KEGG: ypi:YpsIP31758_2974 oxidoreductase, NAD-binding; PFAM: Oxidoreductase family, C-terminal alpha/beta domain; Oxidoreductase family, NAD-binding Rossmann fold
YP_003507481.1	PFAM: Myo-inositol catabolism IolB domain protein; SPTR: A4IPB4 5-deoxy-glucuronate isomerase; InterPro IPR010669; COGs: COG3718 Uncharacterized protein involved in inositol metabolism; KEGG: sus:Acid_1480 myo-inositol catabolism IolB domain-containing protein; PFAM: Myo-inositol catabolism protein IolB
YP_003507482.1	PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; regulatory protein GntR HTH; SMART: regulatory protein DeoR; InterPro IPR001034:IPR013196:IPR000524:IPR014036; KEGG: aba:Acid345_3908 transcriptional regulator, DeoR family; COGs: COG1349 Transcriptional regulators of sugar metabolism; SPTR: A7VWA6 Putative uncharacterized protein; PFAM: DeoR-like helix-turn-helix domain; Bacterial regulatory proteins, deoR family
YP_003507483.1	InterPro IPR001608:IPR011078; PFAM: alanine racemase domain protein; COGs: COG0325 enzyme with a TIM-barrel fold; KEGG: dal:Dalk_0394 alanine racemase domain protein; SPTR: Q9RUL6 UPF0001 protein DR_1368; PFAM: Alanine racemase, N-terminal domain; TIGRFAM: pyridoxal phosphate enzyme, YggS family
YP_003507484.1	TIGRFAM: inosine guanosine and xanthosine phosphorylase family; purine nucleoside phosphorylase I, inosine and guanosine-specific; PFAM: purine or other phosphorylase family 1; InterPro IPR000845:IPR011270:IPR011268; KEGG: bha:BH1532 purine nucleoside phosphorylase; COGs: COG0005 Purine nucleoside phosphorylase; SPTR: A6CMW8 Purine nucleoside phosphorylase; PFAM: Phosphorylase superfamily; TIGRFAM: inosine guanosine and xanthosine phosphorylase family; purine nucleoside phosphorylase I, inosine and guanosine-specific
YP_003507485.1	TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 5; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 4; SMART: RNA polymerase I subunit A domain protein; InterProIPR007081:IPR007066:IPR000722:IPR007083:IPR 007080:IPR006592:IPR012754; KEGG: bha:BH0127 DNA-directed RNA polymerase subunit beta'; COGs: COG0086 DNA-directed RNA polymerase beta' subunit/160 kD subunit; SPTR: Q72HM6 DNA-directed RNA polymerase subunit beta'; PFAM: RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 2; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 5; RNA polymerase Rpb1, domain 4; TIGRFAM: DNA-directed RNA polymerase, beta' subunit, predominant form
YP_003507486.1	TIGRFAM: DNA-directed RNA polymerase, beta subunit; PRIAM: DNA-directed RNA polymerase; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 7; RNA polymerase Rpb2 domain 3; RNA polymerase beta subunit; InterProIPR007645:IPR007641:IPR007644:IPR007120:IPR 007121:IPR010243; KEGG: bcb:BCB4264_A0123 DNA-directed RNA polymerase, beta subunit; COGs: COG0085 DNA-directed RNA polymerase beta subunit/140 kD subunit; SPTR: Q8RQE9 DNA-directed RNA polymerase subunit beta; PFAM: RNA polymerase Rpb2, domain 7; RNA polymerase Rpb2, domain 6; RNA polymerase Rpb2, domain 3; RNA polymerase beta subunit external 1 domain; RNA polymerase beta subunit; TIGRFAM: DNA-directed RNA polymerase, beta subunit
YP_003507487.1	TIGRFAM: seryl-tRNA synthetase; PRIAM: Serine--tRNA ligase; PFAM: tRNA synthetase class II (G H P and S); Seryl-tRNA synthetase, class IIa-like; InterPro IPR002317:IPR002314:IPR015866:IPR006195; KEGG: oan:Oant_2342 seryl-tRNA synthetase; COGs: COG0172 Seryl-tRNA synthetase; SPTR: Q5SJX7 Seryl-tRNA synthetase; PFAM: tRNA synthetase class II core domain (G, H, P, S and T); Seryl-tRNA synthetase N-terminal domain; TIGRFAM: seryl-tRNA synthetase
YP_003507488.1	TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; InterPro IPR003837; KEGG: gsu:GSU3383 glutamyl-tRNA(Gln) amidotransferase, C subunit; COGs: COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit; SPTR: Q1AXT1 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; PFAM: Glu-tRNAGln amidotransferase C subunit; TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit
YP_003507489.1	TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PRIAM: O-acetylhomoserine aminocarboxypropyltransferase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; InterPro IPR000277:IPR006235; KEGG: ank:AnaeK_0983 O-acetylhomoserine/O-acetylserine sulfhydrylase; COGs: COG2873 O-acetylhomoserine sulfhydrylase; SPTR: A1ZXT6 O-acetylhomoserine (Thiol)-lyase; PFAM: Cys/Met metabolism PLP-dependent enzyme; TIGRFAM: OAH/OAS sulfhydrylase
YP_003507490.1	TIGRFAM: homoserine O-acetyltransferase; PRIAM: Homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold; InterPro IPR003089:IPR000073:IPR006296; KEGG: ank:AnaeK_2457 homoserine O-acetyltransferase; COGs: COG2021 Homoserine acetyltransferase; SPTR: Q5SK89 Homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold; TIGRFAM: homoserine O-acetyltransferase
YP_003507491.1	TIGRFAM: glycine dehydrogenase; PRIAM: Glycine dehydrogenase (decarboxylating); PFAM: glycine cleavage system P-protein; InterPro IPR003437; KEGG: bra:BRADO4984 glycine dehydrogenase; COGs: COG1003 Glycine cleavage system protein P (pyridoxal-binding) C-terminal domain; SPTR: A4YXQ9 Glycine dehydrogenase [decarboxylating]; PFAM: Glycine cleavage system P-protein; TIGRFAM: glycine dehydrogenase (decarboxylating)
YP_003507492.1	TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; InterPro IPR002930:IPR003016:IPR017453; KEGG: aci:ACIAD1876 glycine cleavage complex protein H, carrier of aminomethyl moiety via covalently bound lipoyl cofactor; COGs: COG0509 Glycine cleavage system H protein (lipoate-binding); SPTR: Q72LB0 Glycine cleavage system H protein; PFAM: Glycine cleavage H-protein; TIGRFAM: glycine cleavage system H protein
YP_003507493.1	KEGG: bsu:BSU24570 glycine cleavage system aminomethyltransferase T; COGs: COG0404 Glycine cleavage system T protein (aminomethyltransferase); SPTR: Q5SKX0 Aminomethyltransferase; TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; InterPro IPR013977:IPR006222:IPR006223; PFAM: Aminomethyltransferase folate-binding domain; Glycine cleavage T-protein C-terminal barrel domain; TIGRFAM: glycine cleavage system T protein
YP_003507494.1	SPTR: A6GJ40 MglA protein; InterPro IPR001806; COGs: COG2229 GTPase; KEGG: aba:Acid345_0708 MglA protein
YP_003507495.1	PFAM: Roadblock/LC7 family protein; InterPro IPR004942; KEGG: roadblock/LC7 family protein; SPTR: A7X9A1 MglB; PFAM: Roadblock/LC7 domain
YP_003507496.1	PFAM: dienelactone hydrolase; SPTR: A7BCR5 Putative uncharacterized protein; InterPro IPR002925; COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; KEGG: saz:Sama_2025 prolyl oligopeptidase family protein; PFAM: alpha/beta hydrolase fold; Dienelactone hydrolase family
YP_003507497.1	TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PRIAM: Coproporphyrinogen dehydrogenase; PFAM: Radical SAM domain protein; HemN domain protein; InterPro IPR010723:IPR007197:IPR006638:IPR004559; SPTR: A5MMP8 Oxygen-independent coproporphyrinogen III oxidase, putative; KEGG: swi:Swit_0569 coproporphyrinogen III oxidase; COGs: COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductase; SMART: Elongator protein 3/MiaB/NifB; PFAM: HemN C-terminal region; Radical SAM superfamily; TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase
YP_003507498.1	PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; InterProIPR001245:IPR017442:IPR002290:IPR008271:IPR 000719; KEGG: aba:Acid345_4235 serine/threonine protein kinase; COGs: COG0515 Serine/threonine protein kinase; SPTR: A3I4C0 Putative uncharacterized protein; PFAM: Protein kinase domain
YP_003507499.1	PFAM: Patatin; SPTR: A3KX12 Putative uncharacterized protein; InterPro IPR002641; COGs: COG1752 esterase of the alpha-beta hydrolase superfamily; KEGG: smt:Smal_0035 patatin; PFAM: Patatin-like phospholipase
YP_003507500.1	TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; InterPro IPR000223:IPR011056; KEGG: bmt:BSUIS_A0688 signal peptidase I; SPTR: A6CNP0 Type I signal peptidase; PFAM: Peptidase S24-like; Peptidase S26; TIGRFAM: signal peptidase I, bacterial type
YP_003507501.1	PFAM: 20S proteasome A and B subunits; SPTR: Q0ACL4 ATP-dependent protease hslV; InterPro IPR001353; COGs: COG5405 ATP-dependent protease HslVU (ClpYQ) peptidase subunit; KEGG: aeh:Mlg_0066 ATP-dependent protease peptidase subunit; PFAM: Proteasome A-type and B-type
YP_003507502.1	TIGRFAM: heat shock protein HslVU, ATPase subunit HslU; PFAM: ATPase AAA-2 domain protein; SMART: AAA ATPase; InterPro IPR013093:IPR003593:IPR004491; KEGG: afr:AFE_2748 heat shock protein HslVU, ATPase subunit HslU; COGs: COG1220 ATP-dependent protease HslVU (ClpYQ) ATPase subunit; SPTR: Q3A1V6 ATP-dependent hsl protease ATP-binding subunit hslU; PFAM: ATPase family associated with various cellular activities (AAA); TIGRFAM: heat shock protein HslVU, ATPase subunit HslU
YP_003507503.1	PFAM: Tetratricopeptide TPR_2 repeat protein; Tetratricopeptide TPR_4; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; InterPro IPR011717:IPR001440:IPR013105:IPR013026; KEGG: mno:Mnod_2431 peptidase C14 caspase catalytic subunit P20; SPTR: A0YQ74 TPR repeat protein; PFAM: Tetratricopeptide repeat; Tetratricopeptide repeat
YP_003507504.1	COGs: COG2380 conserved hypothetical protein
YP_003507505.1	SPTR: Q4JBF1 Putative uncharacterized protein; COGs: COG0433 ATPase; KEGG: mms:mma_0005 hypothetical protein
YP_003507506.1	SPTR: Q2JMZ3 Leucyl/phenylalanyl-tRNA--protein transferase; KEGG: rce:RC1_0926 leucyl/phenylalanyl-tRNA--protein transferase, putative; COGs: COG2360 Leu/Phe-tRNA-protein transferase; PFAM: leucyl/phenylalanyl-tRNA--protein transferase; TIGRFAM: leucyl/phenylalanyl-tRNA/protein transferase; PRIAM: Leucyltransferase; InterPro IPR004616; PFAM: Leucyl/phenylalanyl-tRNA protein transferase; TIGRFAM: leucyl/phenylalanyl-tRNA--protein transferase
YP_003507507.1	TIGRFAM: 2-methylcitrate synthase/citrate synthase II; PRIAM: Citrate (Si)-synthase; PFAM: Citrate synthase; InterPro IPR002020:IPR011278; KEGG: bba:Bd2511 methylcitrate synthase; COGs: COG0372 Citrate synthase; SPTR: Q9RWB2 Citrate synthase; PFAM: Citrate synthase; TIGRFAM: 2-methylcitrate synthase/citrate synthase II
YP_003507508.1	PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; SPTR: A6FEJ6 Molybdopterin biosynthesis MoeB protein-like protein; KEGG: hch:HCH_04098 molybdopterin/thiamine biosynthesis family protein; COGs: COG0476 Dinucleotide-utilizing protein involved in molybdopterin and thiamine biosynthesis family 2; InterPro IPR007901:IPR000594; PFAM: ThiF family; MoeZ/MoeB domain
YP_003507509.1	SPTR: A3WAA1 Predicted metal-dependent protease; COGs: COG1310 metal-dependent protease of the PAD1/JAB1 superfamily; KEGG: mca:MCA0094 Mov34/MPN/PAD-1 family protein
YP_003507510.1	SPTR: A6GER6 Putative uncharacterized protein; InterPro IPR012808; COGs: COG5587 conserved hypothetical protein; KEGG: aba:Acid345_1614 hypothetical protein; PFAM: Conserved hypothetical protein (DUF2461); TIGRFAM: conserved hypothetical protein TIGR02453
YP_003507511.1	PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; InterPro IPR006662:IPR000866:IPR013740:IPR017937; KEGG: har:HEAR2532 putative thiol:disulfide interchange protein; SPTR: A3JAG5 Putative thiol:disulfide interchange protein; PFAM: Redoxin
YP_003507512.1	PFAM: major facilitator superfamily MFS_1; InterPro IPR011701:IPR007114; KEGG: bcz:BCZK1647 multidrug ABC transporter permease; SPTR: A3TS82 Putative transporter; PFAM: Major Facilitator Superfamily
YP_003507513.1	PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; InterPro IPR001650:IPR011545:IPR014001:IPR014021; KEGG: dal:Dalk_2442 DEAD/DEAH box helicase domain protein; COGs: COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster; SPTR: A8CNM8 DEAD/DEAH box helicase domain protein; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; Domain of unknown function (DUF1998)
YP_003507514.1	PFAM: DNA polymerase beta domain protein region; InterPro IPR002934; KEGG: bcb:BCB4264_A2987 nucleotidyltransferase domain protein; PFAM: Nucleotidyltransferase domain
YP_003507515.1	TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; InterPro IPR006073:IPR002917:IPR004520:IPR005225; KEGG: bbr:BB5005 tRNA modification GTPase TrmE; COGs: COG0486 GTPase; SPTR: Q5SJS7 tRNA modification GTPase mnmE; PFAM: GTP-binding protein TrmE N-terminus; GTPase of unknown function; TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein domain
YP_003507517.1	PFAM: protein of unknown function DUF752; SPTR: A7CLF5 Putative uncharacterized protein; InterPro IPR008471; COGs: COG4121 conserved hypothetical protein; KEGG: reu:Reut_A1378 5-methylaminomethyl-2-thiouridine methyltransferase; PFAM: Protein of unknown function (DUF752)
YP_003507518.1	PFAM: Pyridoxal-dependent decarboxylase; SPTR: A6BT56 Putative pyridoxal-dependent decarboxylase; InterPro IPR010977:IPR002129; COGs: COG0076 Glutamate decarboxylase and related PLP-dependent protein; KEGG: sus:Acid_1182 aromatic-L-amino-acid decarboxylase; PFAM: Pyridoxal-dependent decarboxylase conserved domain
YP_003507520.1	PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; SPTR: A6GHZ0 Serine protease, subtilase family protein; InterPro IPR000209; COGs: COG1404 Subtilisin-like serine protease; KEGG: mno:Mnod_2971 peptidase S8 and S53 subtilisin kexin sedolisin; PFAM: Subtilase family
YP_003507521.1	KEGG: oan:Oant_4363 mandelate racemase/muconate lactonizing protein; COGs: COG4948 L-alanine-DL-glutamate epimerase; SPTR: A3IB71 N-acylamino acid racemase; PFAM: Mandelate racemase/muconate lactonizing protein; InterPro IPR013342:IPR013341; PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; TIGRFAM: o-succinylbenzoic acid (OSB) synthetase
YP_003507522.1	SPTR: A1S150 Putative uncharacterized protein; InterPro IPR000182; COGs: COG3375 conserved hypothetical protein; KEGG: oan:Oant_4362 hypothetical protein
YP_003507523.1	PRIAM: S-adenosylhomocysteine deaminase; PFAM: amidohydrolase; InterPro IPR006680; KEGG: glo:Glov_0961 amidohydrolase; COGs: COG0402 Cytosine deaminase and related metal-dependent hydrolase; SPTR: Q9RW45 Uncharacterized protein DR_0824; PFAM: Amidohydrolase family
YP_003507524.1	PFAM: Chloride channel core; SPTR: O28857 Chloride channel, putative; InterPro IPR001807:IPR014743:IPR001865; COGs: COG0038 Chloride channel protein EriC; KEGG: pca:Pcar_1620 chloride channel protein EriC; PFAM: Voltage gated chloride channel
YP_003507525.1	PFAM: LmbE family protein; SPTR: B5IUM4 GlcNAc-PI de-N-acetylase family; InterPro IPR003737; COGs: COG2120 conserved hypothetical protein LmbE homologs; KEGG: mlo:mll5304 hypothetical protein; PFAM: GlcNAc-PI de-N-acetylase
YP_003507526.1	PFAM: aminotransferase class V; SPTR: A0YWV4 Putative isopenicillin n epimerase protein; InterPro IPR000192; COGs: COG0520 Selenocysteine lyase; KEGG: scl:sce8130 selenocysteine lyase / isopenicillin N epimerase; PFAM: Aminotransferase class-V
YP_003507527.1	PFAM: protein of unknown function DUF336; SPTR: A8GDA9 UPF0303 protein Spro_1996; InterPro IPR005624; COGs: COG4702 conserved hypothetical protein; KEGG: spe:Spro_1996 hypothetical protein; PFAM: Domain of unknown function (DUF336)
YP_003507528.1	PFAM: oxidoreductase domain protein; Semialdehyde dehydrogenase NAD - binding; Oxidoreductase domain; SPTR: P77376 Uncharacterized oxidoreductase ydgJ; InterPro IPR000534:IPR000683:IPR004104; COGs: COG0673 dehydrogenase and related protein; KEGG: xca:xccb100_0758 putative oxidoreductase; PFAM: Oxidoreductase family, C-terminal alpha/beta domain; Oxidoreductase family, NAD-binding Rossmann fold
YP_003507529.1	PFAM: phosphoesterase PA-phosphatase related; InterPro IPR001011:IPR000326; KEGG: nmu:Nmul_A0927 phosphoesterase, PA-phosphatase related; SPTR: A3HY48 Phosphoesterase, PA-phosphatase related protein; PFAM: PAP2 superfamily
YP_003507530.1	PFAM: ASPIC/UnbV domain protein; FG-GAP repeat protein; InterPro IPR011519:IPR013517; KEGG: sit:TM1040_3172 ASPIC/UnbV; SPTR: A0P1K3 FG-GAP repeat domain protein; PFAM: FG-GAP repeat; ASPIC and UnbV
YP_003507531.1	TIGRFAM: D-xylose ABC transporter, periplasmic substrate-binding protein; SPTR: A0P1K7 Xylose ABC transporter, periplasmic xylose-binding protein; InterPro IPR013456; COGs: COG4213 ABC-type xylose transport system periplasmic component; KEGG: rle:RL3624 putative solute-binding component of ABC transporter; TIGRFAM: D-xylose ABC transporter, substrate-binding protein
YP_003507532.1	PFAM: inner-membrane translocator; SPTR: A3V823 Xylose transport permease protein xylH; InterPro IPR001851; COGs: COG4214 ABC-type xylose transport system permease component; KEGG: mes:Meso_3113 inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component
YP_003507533.1	PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593; KEGG: mlo:mll3710 ABC-transport system ATP binding protein; COGs: COG1129 ABC-type sugar transport system ATPase component; SPTR: A0P1K9 Xylose ABC transporter, ATP-binding protein; PFAM: ABC transporter
YP_003507534.1	KEGG: ent:Ent638_1062 oxidoreductase domain-containing protein; COGs: COG0673 dehydrogenase and related protein; SPTR: A3TIA7 Putative oxidoreductase; PFAM: oxidoreductase domain protein; Oxidoreductase domain; InterPro IPR000683:IPR004104; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Oxidoreductase family, C-terminal alpha/beta domain
YP_003507535.1	TIGRFAM: glutaminyl-tRNA synthetase; PFAM: GatB/Yqey domain protein; glutamyl-tRNA synthetase class Ic; InterPro IPR000924:IPR003789:IPR004514; KEGG: sun:SUN_1139 glutaminyl-tRNA synthetase; COGs: COG0008 Glutamyl- and glutaminyl-tRNA synthetase; SPTR: P56926 Glutaminyl-tRNA synthetase; PFAM: tRNA synthetases class I (E and Q), anti-codon binding domain; tRNA synthetases class I (E and Q), catalytic domain; GatB domain; TIGRFAM: glutaminyl-tRNA synthetase
YP_003507536.1	SPTR: Q8PT45 L-sorbosone dehydrogenase; COGs: COG2133 Glucose/sorbosone dehydrogenase; KEGG: pca:Pcar_0624 L-sorbosone dehydrogenase
YP_003507537.1	TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; InterPro IPR004254:IPR005744; KEGG: dvl:Dvul_0099 hemolysin III family channel protein; COGs: COG1272 membrane protein hemolysin III homolog; SPTR: A8CQY9 Hly-III family protein; PFAM: Haemolysin-III related; TIGRFAM: channel protein, hemolysin III family
YP_003507540.1	PFAM: metallophosphoesterase; InterPro IPR004843; KEGG: sus:Acid_0953 metallophosphoesterase; SPTR: Q58322 Uncharacterized protein MJ0912; PFAM: Calcineurin-like phosphoesterase
YP_003507541.1	SPTR: A3ISR0 DNA polymerase III subunit delta'; COGs: COG2812 DNA polymerase III gamma/tau subunits; KEGG: pca:Pcar_1692 DNA polymerase III, gamma/tau subunits
YP_003507542.1	PFAM: PSP1 domain protein; SPTR: A8CRR6 PSP1 domain protein; InterPro IPR007557; COGs: COG1774 Uncharacterized homolog of PSP1; KEGG: gsu:GSU2231 hypothetical protein; PFAM: PSP1 C-terminal conserved region
YP_003507544.1	TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: Nucleotidyl transferase; transferase hexapeptide repeat containing protein; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; InterPro IPR001451:IPR005835:IPR001228:IPR005882; KEGG: ank:AnaeK_4068 UDP-N-acetylglucosamine pyrophosphorylase; COGs: COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains); SPTR: Q5SLA8 Bifunctional protein glmU; PFAM: Bacterial transferase hexapeptide (three repeats); Nucleotidyl transferase; TIGRFAM: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
YP_003507545.1	TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase; InterPro IPR001640; KEGG: dal:Dalk_1768 prolipoprotein diacylglyceryl transferase; COGs: COG0682 Prolipoprotein diacylglyceryltransferase; SPTR: Q72LP2 Prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase
YP_003507546.1	PFAM: glutaredoxin 2; InterPro IPR008554; KEGG: slo:Shew_1813 glutaredoxin 2; PFAM: Glutaredoxin-like domain (DUF836)
YP_003507547.1	PRIAM: Glycine C-acetyltransferase; PFAM: aminotransferase class I and II; aminotransferase class-III; InterPro IPR005814:IPR004839; KEGG: sat:SYN_00565 2-amino-3-ketobutyrate coenzyme A ligase; COGs: COG0156 7-keto-8-aminopelargonate synthetase; SPTR: B3NH10 GG13887; PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase
YP_003507548.1	PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; SPTR: A6CL55 NAD-dependent epimerase; possible UDP-glucose 4-epimerase; InterPro IPR013120:IPR002225:IPR005913:IPR001509; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; KEGG: sat:SYN_00564 L-threonine 3-dehydrogenase; PFAM: NAD dependent epimerase/dehydratase family
YP_003507549.1	PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; SPTR: A0YW70 Cobalamin synthesis; InterPro IPR011629:IPR003495; COGs: COG0523 Putative GTPase (G3E family); KEGG: gbe:GbCGDNIH1_0170 GTP-dependent regulatory protein; PFAM: CobW/HypB/UreG, nucleotide-binding domain; Cobalamin synthesis protein cobW C-terminal domain
YP_003507550.1	SPTR: Q5SLQ3 Octanoyltransferase; KEGG: mxa:MXAN_4215 lipoate-protein ligase B; COGs: COG0321 Lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; TIGRFAM: lipoate-protein ligase B; PRIAM: Lipoyl(octanoyl) transferase; InterPro IPR004143:IPR000544; PFAM: Biotin/lipoate A/B protein ligase family; TIGRFAM: lipoate-protein ligase B
YP_003507551.1	TIGRFAM: lipoic acid synthetase; PRIAM: Lipoyl synthase; PFAM: Radical SAM domain protein; InterPro IPR007197:IPR006638:IPR003698; SPTR: Q5SLQ4 Lipoyl synthase; KEGG: maq:Maqu_2373 lipoyl synthase; COGs: COG0320 Lipoate synthase; SMART: Elongator protein 3/MiaB/NifB; PFAM: Radical SAM superfamily; TIGRFAM: lipoate synthase
YP_003507552.1	KEGG: CGLD9; hypothetical protein; SPTR: A8HS81 Predicted protein
YP_003507553.1	PFAM: Endoribonuclease L-PSP; SPTR: A1ZKT4 Endoribonuclease L-PSP; InterPro IPR006175; COGs: COG0251 Putative translation initiation inhibitor yjgF family; KEGG: mxa:MXAN_5993 hypothetical protein; PFAM: Endoribonuclease L-PSP
YP_003507554.1	PFAM: MOSC domain containing protein; SPTR: O34542 Uncharacterized protein yflK; InterPro IPR005302; COGs: COG2258 conserved hypothetical protein; KEGG: rec:RHECIAT_CH0000161 hypothetical protein; PFAM: MOSC domain
YP_003507555.1	TIGRFAM: ribosomal protein L9; PFAM: ribosomal protein L9; InterPro IPR000244; KEGG: glo:Glov_2610 ribosomal protein L9; COGs: COG0359 Ribosomal protein L9; SPTR: Q72GV5 50S ribosomal protein L9; PFAM: Ribosomal protein L9, C-terminal domain; Ribosomal protein L9, N-terminal domain; TIGRFAM: ribosomal protein L9
YP_003507556.1	TIGRFAM: ribosomal protein S18; PFAM: ribosomal protein S18; InterPro IPR001648:IPR001395; KEGG: hne:HNE_2162 ribosomal protein S18; COGs: COG0238 Ribosomal protein S18; SPTR: Q5SLQ0 30S ribosomal protein S18; PFAM: Ribosomal protein S18; TIGRFAM: ribosomal protein S18
YP_003507557.1	TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; InterPro IPR000424:IPR011344; KEGG: gur:Gura_4397 single-strand binding protein; COGs: COG0629 Single-stranded DNA-binding protein; SPTR: Q9KH06 Single-stranded DNA-binding protein; PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb)
YP_003507558.1	TIGRFAM: ribosomal protein S6; PFAM: ribosomal protein S6; InterPro IPR000529; KEGG: bha:BH4050 30S ribosomal protein S6; COGs: COG0360 Ribosomal protein S6; SPTR: Q9RY52 30S ribosomal protein S6; PFAM: Ribosomal protein S6; TIGRFAM: ribosomal protein S6
YP_003507559.1	PFAM: FAD dependent oxidoreductase; SPTR: A8KHN2 Oxidoreductase; InterPro IPR006076; COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); KEGG: FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase
YP_003507560.1	TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; InterPro IPR001865:IPR005706; KEGG: bcr:BCAH187_A3874 ribosomal protein S2; COGs: COG0052 Ribosomal protein S2; SPTR: P80371 30S ribosomal protein S2; PFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type
YP_003507561.1	InterPro IPR014039:IPR000449:IPR001816; TIGRFAM: translation elongation factor Ts; COGs: COG0264 Translation elongation factor Ts; SPTR: P43895 Elongation factor Ts; KEGG: dde:Dde_1132 translation elongation factor Ts (EF-Ts); PFAM: Translation elongation factor EFTs/EF1B dimerisation; ubiquitin-associated- domain-containing protein; PFAM: UBA/TS-N domain; Elongation factor TS; TIGRFAM: translation elongation factor Ts
YP_003507562.1	TIGRFAM: uridylate kinase; PRIAM: UMP kinase; PFAM: aspartate/glutamate/uridylate kinase; InterPro IPR001048:IPR015963; KEGG: pca:Pcar_1919 uridylate kinase; COGs: COG0528 Uridylate kinase; SPTR: P43891 Uridylate kinase; PFAM: Amino acid kinase family; TIGRFAM: uridylate kinase
YP_003507563.1	TIGRFAM: ribosome recycling factor; PFAM: ribosome recycling factor; InterPro IPR002661; KEGG: gsu:GSU1918 ribosome recycling factor; COGs: COG0233 Ribosome recycling factor; SPTR: Q9WX76 Ribosome-recycling factor; PFAM: Ribosome recycling factor; TIGRFAM: ribosome recycling factor
YP_003507564.1	PFAM: phosphatidate cytidylyltransferase; SPTR: A6CSY0 Phosphatidate cytidylyltransferase; InterPro IPR000374; COGs: COG0575 CDP-diglyceride synthetase; KEGG: bsu:BSU16540 phosphatidate cytidylyltransferase (CDP-diglyceride synthase); PFAM: Cytidylyltransferase family
YP_003507565.1	TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PRIAM: 1-deoxy-D-xylulose-5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain protein; InterPro IPR013512:IPR013644:IPR003821; KEGG: aba:Acid345_1419 1-deoxy-D-xylulose 5-phosphate reductoisomerase; COGs: COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase; SPTR: Q5SJZ6 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase
YP_003507566.1	TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; InterPro IPR001478:IPR008915:IPR004387; KEGG: ade:Adeh_1121 peptidase M50, putative membrane-associated zinc metallopeptidase; COGs: COG0750 membrane-associated Zn-dependent protease 1; SPTR: Q9RU85 Putative zinc metalloprotease DR_1507; PFAM: Peptidase family M50; TIGRFAM: RIP metalloprotease RseP
YP_003507567.1	PFAM: glycosyl transferase family 2; SPTR: Q8TVK8 Glycosyltransferase involved in cell wall biogenesis; KEGG: rsh:Rsph17029_0824 glycosyl transferase family protein; COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; PFAM: Glycosyl transferase family 2
YP_003507569.1	PFAM: Radical SAM domain protein; SPTR: A6C9N4 Putative uncharacterized protein; InterPro IPR007197:IPR005244; COGs: COG1060 Thiamine biosynthesis protein ThiH; KEGG: dds:Ddes_1280 radical SAM domain protein; PFAM: Radical SAM superfamily; TIGRFAM: radical SAM domain protein, CofH subfamily
YP_003507570.1	SPTR: A7AZT2 Putative uncharacterized protein; COGs: COG1668 ABC-type Na+ efflux pump permease component; KEGG: mxa:MXAN_6826 putative sodium ABC transporter, permease protein
YP_003507571.1	PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593; KEGG: pat:Patl_2951 ABC transporter related; COGs: COG1131 ABC-type multidrug transport system ATPase component; SPTR: A6C9N3 ABC transporter (ATP-binding protein)-putative sodium extrusion ABC transporter; PFAM: ABC transporter
YP_003507572.1	PFAM: ABC-2 type transporter; InterPro IPR013526:IPR013525:IPR000412; KEGG: dps:DP1542 hypothetical protein; SPTR: Q9Y8X0 ABC transporter, permease protein; PFAM: ABC-2 type transporter
YP_003507573.1	PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593; KEGG: sus:Acid_0602 ABC transporter related; COGs: COG1131 ABC-type multidrug transport system ATPase component; SPTR: A1S017 Daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter
YP_003507574.1	PFAM: Cupin 2 conserved barrel domain protein; InterPro IPR013096; KEGG: dal:Dalk_3657 cupin 2 conserved barrel domain protein; SPTR: A3JTY2 Putative pectin degradation protein (Sugar phosphate isomerase family); PFAM: Cupin domain
YP_003507575.1	PFAM: Enoyl-CoA hydratase/isomerase; SPTR: A5TDD7 Putative enoyl-CoA hydratase; InterPro IPR001753; COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; KEGG: fadB1; enoyl-CoA hydratase protein ; K01692 enoyl-CoA hydratase; PFAM: Enoyl-CoA hydratase/isomerase family
YP_003507576.1	PFAM: Enoyl-CoA hydratase/isomerase; SPTR: A6CP12 Enoyl-CoA hydratase subunit II (Phenylacetic acid catabolism); InterPro IPR001753; COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; KEGG: cti:RALTA_A3047 enoyl-CoA hydratase; PFAM: Enoyl-CoA hydratase/isomerase family
YP_003507577.1	TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein RuvA domain I; RuvA domain protein; SMART: Helix-hairpin-helix DNA-binding class 1; InterPro IPR011114:IPR013849:IPR003583:IPR000085; KEGG: ppd:Ppro_2671 Holliday junction DNA helicase RuvA; COGs: COG0632 Holliday junction resolvasome DNA-binding subunit; SPTR: Q9F1Q3 Holliday junction ATP-dependent DNA helicase ruvA; PFAM: RuvA N terminal domain; RuvA, C-terminal domain; TIGRFAM: Holliday junction DNA helicase, RuvA subunit
YP_003507578.1	KEGG: ank:AnaeK_1420 conserved hypothetical cytosolic protein; SPTR: A4EVH4 Hypothetical Cytosolic Protein
YP_003507579.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; InterPro IPR005834:IPR006402:IPR006439; KEGG: bha:BH2155 hypothetical protein; COGs: COG1011 hydrolase (HAD superfamily); SPTR: P94512 Putative uncharacterized hydrolase ysaA; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
YP_003507580.1	SPTR: A0ZIC8 Putative uncharacterized protein; InterPro IPR001452; KEGG: dps:DP0201 hypothetical protein
YP_003507581.1	KEGG: mgm:Mmc1_1833 methyl-accepting chemotaxis sensory transducer; SPTR: A0ZIC8 Putative uncharacterized protein
YP_003507582.1	PRIAM: Glutamate synthase (ferredoxin); PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamine amidotransferase class-II; InterPro IPR002489:IPR002932:IPR000583; KEGG: gur:Gura_0393 glutamate synthase (ferredoxin); COGs: COG0069 Glutamate synthase domain 2; SPTR: A6CLT3 Glutamate synthase, large subunit, putative; PFAM: Glutamine amidotransferases class-II; GXGXG motif; Glutamate synthase central domain; Conserved region in glutamate synthase
YP_003507583.1	PFAM: Stage V sporulation protein S; SPTR: A1HN80 Stage V sporulation protein S; InterPro IPR007347; COGs: COG2359 conserved hypothetical protein; KEGG: bsu:BSU16980 required for dehydratation of the spore core and assembly of the coat (stage V sporulation); PFAM: Stage V sporulation protein S (SpoVS)
YP_003507584.1	PFAM: peptidase membrane zinc metallopeptidase putative; SPTR: A7G5Z1 Putative neutral zinc metallopeptidase; InterPro IPR007395; COGs: COG2738 Zn-dependent protease; KEGG: bca:BCE_1656 neutral zinc metallopeptidase, putative; PFAM: Putative neutral zinc metallopeptidase
YP_003507585.1	TIGRFAM: cysteinyl-tRNA synthetase; PRIAM: Cysteine--tRNA ligase; PFAM: Cysteinyl-tRNA synthetase class Ia ; Cysteinyl-tRNA synthetase class Ia DALR; tRNA synthetase class I (M); InterPro IPR015803:IPR015413:IPR015273:IPR002308; KEGG: aeh:Mlg_1810 cysteinyl-tRNA synthetase; COGs: COG0215 Cysteinyl-tRNA synthetase; SPTR: Q72KB0 Cysteinyl-tRNA synthetase; PFAM: DALR domain; tRNA synthetases class I (C) catalytic domain; TIGRFAM: cysteinyl-tRNA synthetase
YP_003507586.1	PFAM: cyclase/dehydrase; InterPro IPR005031; KEGG: psp:PSPPH_2708 hypothetical protein; SPTR: A3KKL5 Putative uncharacterized protein; PFAM: Polyketide cyclase / dehydrase and lipid transport
YP_003507587.1	KEGG: rce:RC1_2731 transposase and inactivated derivative; SPTR: A4BSA3 Transposase and inactivated derivative
YP_003507588.1	KEGG: rpc:RPC_4058 transposase and inactivated derivative; SPTR: A0YIL6 Putative uncharacterized protein
YP_003507590.1	PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; SMART: CBS domain containing protein; InterPro IPR000644:IPR002550:IPR005170; KEGG: hac:Hac_1750 putative integral membrane protein with haemolysin domain; COGs: COG1253 Hemolysins and related protein containing CBS domains; SPTR: A6EK91 Putative uncharacterized protein; PFAM: CBS domain pair; Domain of unknown function DUF21; Transporter associated domain
YP_003507591.1	PFAM: diacylglycerol kinase; SPTR: A0YYA4 Prokaryotic diacylglycerol kinase; InterPro IPR000829; COGs: COG0818 Diacylglycerol kinase; KEGG: glo:Glov_1542 diacylglycerol kinase; PFAM: Prokaryotic diacylglycerol kinase
YP_003507592.1	PFAM: protein of unknown function UPF0054; SPTR: Q72JT5 Putative metalloprotease TT_C0683; InterPro IPR002036; COGs: COG0319 metal-dependent hydrolase; KEGG: afw:Anae109_2711 hypothetical protein; PFAM: Uncharacterized protein family UPF0054; TIGRFAM: conserved hypothetical protein TIGR00043
YP_003507593.1	PFAM: PhoH family protein; SPTR: A8SF85 Putative uncharacterized protein; InterPro IPR003714; COGs: COG1702 Phosphate starvation-inducible protein PhoH predicted ATPase; KEGG: mxa:MXAN_4738 PhoH family protein; PFAM: PhoH-like protein
YP_003507594.1	KEGG: bbt:BBta_0237 OmpA family protein; SPTR: Q6AHW2 Protease-1 (PRT1),, putative (Fragment)
YP_003507595.1	SPTR: Q72JT2 UPF0365 protein TT_C0686; COGs: COG4864 conserved hypothetical protein; KEGG: bha:BH1357 hypothetical protein
YP_003507596.1	PFAM: protein of unknown function DUF107; SPTR: P54465 Uncharacterized protein yqeZ; InterPro IPR002810; COGs: COG1030 Membrane-bound serine protease (ClpP class); KEGG: bha:BH1356 hypothetical protein; PFAM: NfeD-like
YP_003507597.1	TIGRFAM: shikimate 5-dehydrogenase; PRIAM: Shikimate dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5-dehydrogenase; InterPro IPR013708:IPR006151:IPR011342; KEGG: sat:SYN_01937 shikimate 5-dehydrogenase; COGs: COG0169 Shikimate 5-dehydrogenase; SPTR: Q72JT0 Shikimate dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding domain; Shikimate / quinate 5-dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase
YP_003507598.1	PFAM: protein of unknown function UPF0029; SPTR: A3L0Q5 Putative uncharacterized protein; InterPro IPR001498; COGs: COG1739 conserved hypothetical protein; KEGG: sml:Smlt2002 hypothetical protein; PFAM: Uncharacterized protein family UPF0029; TIGRFAM: conserved hypothetical protein TIGR00257
YP_003507599.1	PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; SPTR: A1HSD3 Beta-lactamase domain protein; InterPro IPR001279:IPR011108; COGs: COG0595 hydrolase of the metallo-beta-lactamase superfamily; KEGG: bha:BH2398 hypothetical protein; PFAM: Metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase; TIGRFAM: conserved hypothetical protein
YP_003507600.1	PFAM: 3' exoribonuclease; RNA binding S1 domain protein; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; Exoribonuclease, phosphorolytic domain 2; KH type 1 domain protein; SMART: RNA binding S1 domain protein; KH domain protein; InterProIPR015848:IPR003029:IPR015847:IPR004088:IPR 001247:IPR004087; KEGG: mfa:Mfla_0071 polynucleotide phosphorylase/polyadenylase; COGs: COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); SPTR: Q9ZAE1 Polyribonucleotide nucleotidyltransferase; PFAM: Polyribonucleotide nucleotidyltransferase, RNA binding domain; 3' exoribonuclease family, domain 1; KH domain; S1 RNA binding domain; 3' exoribonuclease family, domain 2; TIGRFAM: polyribonucleotide nucleotidyltransferase
YP_003507601.1	TIGRFAM: ribosomal protein S15; PFAM: ribosomal protein S15; InterPro IPR000589:IPR005290; KEGG: dvl:Dvul_2437 30S ribosomal protein S15; COGs: COG0184 Ribosomal protein S15P/S13E; SPTR: P80378 30S ribosomal protein S15; PFAM: Ribosomal protein S15; TIGRFAM: ribosomal protein S15, bacterial/organelle
YP_003507602.1	PFAM: major facilitator superfamily MFS_1; proton/sugar symporter LacY; SPTR: A8CP76 Major facilitator superfamily MFS_1; InterPro IPR000576:IPR011701:IPR007114; COGs: COG2270 Permease of the major facilitator superfamily; KEGG: gsu:GSU2744 major facilitator family transporter; PFAM: Major Facilitator Superfamily
YP_003507603.1	PFAM: cytochrome c oxidase subunit I; SPTR: Q5SJ79 Cytochrome c oxidase subunit 1; InterPro IPR000883; COGs: COG0843 Heme/copper-type cytochrome/quinol oxidase subunit 1; KEGG: bha:BH0739 cytochrome c oxidase subunit I; PFAM: Cytochrome C and Quinol oxidase polypeptide I
YP_003507604.1	PFAM: cytochrome c oxidase subunit II; SPTR: Q5SJ80 Cytochrome c oxidase subunit 2; InterPro IPR002429:IPR001505; COGs: COG1622 Heme/copper-type cytochrome/quinol oxidase subunit 2; KEGG: bha:BH0740 cytochrome c oxidase subunit II; PFAM: Cytochrome C oxidase subunit II, transmembrane; Cytochrome C oxidase subunit II, periplasmic domain
YP_003507605.1	PFAM: Cytochrome c oxidase subunit IIa family
YP_003507606.1	TIGRFAM: transketolase; PFAM: Transketolase central region; Transketolase domain protein; InterPro IPR005476:IPR005475:IPR005474:IPR005478; KEGG: dal:Dalk_2752 transketolase; COGs: COG0021 Transketolase; SPTR: A6C7Q1 Transketolase; PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; Transketolase, thiamine diphosphate binding domain; TIGRFAM: transketolase, bacterial and yeast
YP_003507608.1	KEGG: rfr:Rfer_1964 putative dehydrogenase; SPTR: A1HRQ6 Putative uncharacterized protein
YP_003507609.1	PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; InterPro IPR006047:IPR006589; KEGG: aba:Acid345_1492 alpha amylase; COGs: COG0366 Glycosidase; SPTR: A0DAU1 Chromosome undetermined scaffold_43, whole genome shotgun sequence; PFAM: Alpha amylase, catalytic domain
YP_003507610.1	PFAM: peptidase M29 aminopeptidase II; SPTR: A6FUS8 Probable aminopeptidase protein; InterPro IPR000787; COGs: COG2309 Leucyl aminopeptidase (aminopeptidase T); KEGG: met:M446_3109 peptidase M29 aminopeptidase II; PFAM: Thermophilic metalloprotease (M29)
YP_003507611.1	InterPro IPR001020
YP_003507612.1	TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase zinc-binding; InterPro IPR002125:IPR006262; KEGG: pde:Pden_2223 cytidine deaminase; COGs: COG0295 Cytidine deaminase; SPTR: A3VAX5 Cytidine deaminase; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: cytidine deaminase, homotetrameric
YP_003507613.1	PFAM: TM1410 hypothetical-related protein; InterPro IPR004352; KEGG: pap:PSPA7_2073 hypothetical protein; SPTR: A3KW97 Putative uncharacterized protein; PFAM: TM1410 hypothetical-related protein
YP_003507614.1	KEGG: Hypothetical protein CBG09235; SPTR: A0ACV3 Putative uncharacterized protein
YP_003507615.1	PFAM: glycosyl transferase group 1; SPTR: A0ACV2 Putative glycosyltransferase; InterPro IPR001296; COGs: COG0438 Glycosyltransferase; KEGG: maq:Maqu_1899 glycosyl transferase, group 1; PFAM: Glycosyl transferases group 1
YP_003507616.1	KEGG: pna:Pnap_1640 hypothetical protein; SPTR: A0ACV1 Putative uncharacterized protein
YP_003507617.1	PFAM: TM1410 hypothetical-related protein; SPTR: A6GAS5 Putative endo alpha-1,4 polygalactosaminidase; InterPro IPR004352; COGs: COG3868 conserved hypothetical protein; KEGG: nmu:Nmul_A2438 hypothetical protein; PFAM: TM1410 hypothetical-related protein
YP_003507618.1	KEGG: sus:Acid_6287 hypothetical protein
YP_003507619.1	PRIAM: Histidine kinase; PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; InterPro IPR004358:IPR011712:IPR003594:IPR005467; KEGG: gur:Gura_0760 integral membrane sensor signal transduction histidine kinase; COGs: COG4585 Signal transduction histidine kinase; SPTR: A1HPR4 Histidine kinase; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_003507620.1	TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); InterPro IPR001537:IPR004384; KEGG: gur:Gura_2030 RNA methyltransferase; COGs: COG0565 rRNA methylase; SPTR: A0ZAJ5 RNA methyltransferase TrmH, group 1; PFAM: SpoU rRNA Methylase family; TIGRFAM: RNA methyltransferase, TrmH family, group 1
YP_003507621.1	TIGRFAM: dihydroxy-acid dehydratase; PRIAM: Dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; SPTR: Q72JA8 Dihydroxy-acid dehydratase; KEGG: sus:Acid_0606 dihydroxy-acid dehydratase; COGs: COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; InterPro IPR000581:IPR004404; PFAM: Dehydratase family; TIGRFAM: dihydroxy-acid dehydratase
YP_003507622.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; Male sterility domain; SPTR: B6H9R2 Pc16g11920 protein; InterPro IPR002347:IPR013120:IPR013968:IPR002198; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); KEGG: gme:Gmet_0422 short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase
YP_003507623.1	TIGRFAM: 3-isopropylmalate dehydrogenase; PRIAM: 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; InterPro IPR001804:IPR004429; KEGG: sun:SUN_1705 3-isopropylmalate dehydrogenase; COGs: COG0473 Isocitrate/isopropylmalate dehydrogenase; SPTR: Q5SIY4 3-isopropylmalate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase
YP_003507624.1	TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; InterPro IPR000573:IPR004431; KEGG: scl:sce0085 isopropylmalate isomerase small subunit; COGs: COG0066 3-isopropylmalate dehydratase small subunit; SPTR: A7CSZ0 3-isopropylmalate dehydratase, small subunit; PFAM: Aconitase C-terminal domain; TIGRFAM: 3-isopropylmalate dehydratase, small subunit
YP_003507626.1	PFAM: protein of unknown function DUF820; SPTR: A0YQ43 Putative uncharacterized protein; InterPro IPR008538; COGs: COG4636 conserved hypothetical protein; KEGG: noc:Noc_0762 hypothetical protein; PFAM: Protein of unknown function (DUF820)
YP_003507627.1	SPTR: A7CSY9 3-isopropylmalate dehydratase, large subunit; KEGG: scl:sce0086 isopropylmalate isomerase large subunit; PFAM: aconitate hydratase domain protein; InterPro IPR001030:IPR004430; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; COGs: COG0065 3-isopropylmalate dehydratase large subunit; PFAM: Aconitase family (aconitate hydratase); TIGRFAM: 3-isopropylmalate dehydratase, large subunit
YP_003507628.1	PFAM: aminoglycoside phosphotransferase; InterPro IPR002575; KEGG: rle:RL3115 putative phosphotransferase family protein; SPTR: A4BB27 Possible aminoglycoside phosphotransferase (Protein kinase related), diverged; PFAM: Phosphotransferase enzyme family; TIGRFAM: Fibrobacter succinogenes paralogous family TIGR02172
YP_003507629.1	TIGRFAM: RNA modification enzyme, MiaB family; tRNA-i(6)A37 thiotransferase enzyme MiaB; PFAM: Protein of unknown function UPF0004 ; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; InterProIPR007197:IPR013848:IPR006638:IPR005839:IPR 006463; KEGG: bcy:Bcer98_2424 tRNA-i(6)A37 thiotransferase enzyme MiaB; COGs: COG0621 2-methylthioadenine synthetase; SPTR: A2UBX8 TRNA-i(6)A37 thiotransferase enzyme MiaB (Fragment); PFAM: Uncharacterized protein family UPF0004; Radical SAM superfamily; TIGRFAM: RNA modification enzyme, MiaB family; tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
YP_003507630.1	PFAM: FAD dependent oxidoreductase; InterPro IPR003042:IPR006076; KEGG: hypothetical protein ; K00274 monoamine oxidase; PFAM: FAD dependent oxidoreductase
YP_003507631.1	TIGRFAM: thymidylate synthase; PRIAM: Thymidylate synthase; PFAM: thymidylate synthase; InterPro IPR000398; KEGG: cvi:CV_1027 thymidylate synthase; COGs: COG0207 Thymidylate synthase; SPTR: Q7NZ95 Thymidylate synthase; PFAM: Thymidylate synthase; TIGRFAM: thymidylate synthase
YP_003507632.1	PRIAM: Dihydrofolate reductase; PFAM: dihydrofolate reductase region; InterPro IPR001796:IPR017925; KEGG: mex:Mext_2659 dihydrofolate reductase; COGs: COG0262 Dihydrofolate reductase; SPTR: A4B9F5 Dihydrofolate reductase; PFAM: Dihydrofolate reductase
YP_003507633.1	KEGG: mno:Mnod_4348 hypothetical protein
YP_003507634.1	PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: AAA ATPase; InterProIPR001270:IPR003959:IPR013093:IPR011704:IPR 004176:IPR003593; KEGG: kpn:KPN_pKPN3p05899 ATPase with chaperone activity, ATP-binding subunit; COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; SPTR: A1HTJ4 ATPase AAA-2 domain protein; PFAM: ATPase family associated with various cellular activities (AAA); Clp amino terminal domain; C-terminal, D2-small domain, of ClpB protein; ATPase family associated with various cellular activities (AAA)
YP_003507635.1	PFAM: regulatory protein MarR; SMART: regulatory protein MarR; InterPro IPR000835; KEGG: bac:BamMC406_0069 MarR family transcriptional regulator; SPTR: Q9YFF3 Putative transcriptional regulator, MarR family; PFAM: MarR family
YP_003507636.1	KEGG: mca:MCA2394 cytochrome c'; SPTR: A8CXY2 Putative uncharacterized protein
YP_003507637.1	PFAM: protein of unknown function DUF820; SPTR: A0ZBK0 Putative uncharacterized protein; InterPro IPR008538; COGs: COG4636 conserved hypothetical protein; KEGG: lch:Lcho_2361 hypothetical protein; PFAM: Protein of unknown function (DUF820)
YP_003507638.1	TIGRFAM: glycyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; InterPro IPR002315:IPR002314:IPR004154:IPR006195; KEGG: mmw:Mmwyl1_0933 glycyl-tRNA synthetase; COGs: COG0423 Glycyl-tRNA synthetase (class II); SPTR: Q1IXM3 Glycyl-tRNA synthetase; PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: glycyl-tRNA synthetase, dimeric type
YP_003507640.1	PFAM: regulator of chromosome condensation RCC1; SPTR: A7CTX4 Immunoglobulin I-set domain protein; InterPro IPR000408; COGs: COG5184 Alpha-tubulin suppressor and related RCC1 domain-containing protein; KEGG: dal:Dalk_3426 regulator of chromosome condensation RCC1; PFAM: Regulator of chromosome condensation (RCC1)
YP_003507641.1	KEGG: gbm:Gbem_3913 proton-translocating NADH-quinone oxidoreductase, chain N; COGs: COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N); SPTR: Q56229 NADH-quinone oxidoreductase subunit 14; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I); InterPro IPR001750:IPR010096; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N
YP_003507642.1	TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); InterPro IPR003918:IPR001750:IPR010227; KEGG: afr:AFE_2618 NADH-quinone oxidoreductase, M subunit; COGs: COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M); SPTR: Q56228 NADH-quinone oxidoreductase subunit 13; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M
YP_003507643.1	TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; InterPro IPR003945:IPR003916:IPR001750:IPR001516; KEGG: bba:Bd3888 NADH dehydrogenase I chain L; COGs: COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter MnhA subunit; SPTR: Q56227 NADH-quinone oxidoreductase subunit 12; PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L
YP_003507644.1	PFAM: NADH-ubiquinone oxidoreductase chain 4L; SPTR: Q56226 NADH-quinone oxidoreductase subunit 11; InterPro IPR001133; COGs: COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K); KEGG: gbm:Gbem_3916 NADH-ubiquinone oxidoreductase chain 4L; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
YP_003507645.1	PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; SPTR: Q56225 NADH-quinone oxidoreductase subunit 10; InterPro IPR001457; COGs: COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J); KEGG: afw:Anae109_4347 NADH-ubiquinone/plastoquinone oxidoreductase chain 6; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6
YP_003507646.1	TIGRFAM: NADH-quinone oxidoreductase, chain I; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; InterPro IPR001450:IPR017900:IPR010226; KEGG: sus:Acid_3879 NADH-quinone oxidoreductase, chain I; COGs: COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I); SPTR: Q56224 NADH-quinone oxidoreductase subunit 9; PFAM: 4Fe-4S binding domain; TIGRFAM: NADH-quinone oxidoreductase, chain I
YP_003507647.1	PRIAM: NADH dehydrogenase (quinone); PFAM: respiratory-chain NADH dehydrogenase subunit 1; InterPro IPR001694; KEGG: aba:Acid345_1308 respiratory-chain NADH dehydrogenase, subunit 1; COGs: COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H); SPTR: Q60019 NADH-quinone oxidoreductase subunit 8; PFAM: NADH dehydrogenase
YP_003507648.1	TIGRFAM: NADH-quinone oxidoreductase, chain G; PFAM: ferredoxin; molybdopterin oxidoreductase; InterProIPR001450:IPR001041:IPR006656:IPR000283:IPR 010228; KEGG: bac:BamMC406_2160 NADH-quinone oxidoreductase, chain G; COGs: COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G); SPTR: Q56223 NADH-quinone oxidoreductase subunit 3; PFAM: 2Fe-2S iron-sulfur cluster binding domain; NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; Molybdopterin oxidoreductase; Thiamine pyrophosphate enzyme, central domain; TIGRFAM: NADH-quinone oxidoreductase, chain G
YP_003507649.1	TIGRFAM: NADH-quinone oxidoreductase, F subunit; PRIAM: NADH dehydrogenase (quinone); PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; InterPro IPR011538:IPR001949:IPR011537; KEGG: smd:Smed_3618 NADH-quinone oxidoreductase, F subunit; COGs: COG1894 NADH:ubiquinone oxidoreductase NADH-binding (51 kD) subunit; SPTR: Q56222 NADH-quinone oxidoreductase subunit 1; PFAM: SLBB domain; NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; Respiratory-chain NADH dehydrogenase 51 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, F subunit
YP_003507650.1	TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; InterPro IPR002023; KEGG: sme:SMa1526 NuoE2 NADH I chain E; COGs: COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit; SPTR: Q56221 NADH-quinone oxidoreductase subunit 2; PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit
YP_003507651.1	TIGRFAM: NADH dehydrogenase I, D subunit; PRIAM: NADH dehydrogenase (quinone); PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; InterPro IPR001135:IPR014029:IPR010219; KEGG: gur:Gura_4241 NADH dehydrogenase I, D subunit; COGs: COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit 7; SPTR: Q72GD1 NADH-quinone oxidoreductase subunit 4; PFAM: Respiratory-chain NADH dehydrogenase, 49 Kd subunit; TIGRFAM: NADH dehydrogenase I, D subunit
YP_003507652.1	PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; SPTR: Q56219 NADH-quinone oxidoreductase subunit 5; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; COGs: COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit; InterPro IPR001268:IPR010218; KEGG: gme:Gmet_3353 NADH (or F420H2) dehydrogenase, subunit C; PFAM: Respiratory-chain NADH dehydrogenase, 30 Kd subunit; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C
YP_003507653.1	TIGRFAM: NADH-quinone oxidoreductase, B subunit; PRIAM: NADH dehydrogenase (quinone); PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; InterPro IPR006137:IPR006138; KEGG: aba:Acid345_2252 NADH-quinone oxidoreductase, B subunit; COGs: COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductase; SPTR: Q56218 NADH-quinone oxidoreductase subunit 6; PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, B subunit
YP_003507654.1	PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; SPTR: Q56217 NADH-quinone oxidoreductase subunit 7; InterPro IPR000440; COGs: COG0838 NADH:ubiquinone oxidoreductase subunit 3 (chain A); KEGG: rpr:RP357 NADH dehydrogenase subunit A; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
YP_003507655.1	SPTR: O28602 Coenzyme F390 synthetase (FtsA-2); COGs: COG1541 Coenzyme F390 synthetase; KEGG: dps:DP1272 coenzyme F390 synthetase
YP_003507656.1	SPTR: A3ZHJ7 Putative uncharacterized protein; COGs: COG3809 conserved hypothetical protein; KEGG: pzu:PHZ_c1221 hypothetical protein
YP_003507657.1	PFAM: purine catabolism PurC domain protein; helix-turn-helix Fis-type; InterPro IPR002197:IPR012914; KEGG: pau:PA14_39770 putative regulatory protein; SPTR: A3IE87 Putative uncharacterized protein; PFAM: Purine catabolism regulatory protein-like family; Bacterial regulatory protein, Fis family
YP_003507658.1	TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20; InterPro IPR002933:IPR010158; KEGG: mch:Mchl_1455 amidase, hydantoinase/carbamoylase family; COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; SPTR: Q97VB6 N-carbamoyl-L-amino acid amidohydrolase (AmaB); PFAM: Peptidase family M20/M25/M40; TIGRFAM: amidase, hydantoinase/carbamoylase family
YP_003507659.1	PFAM: NMT1/THI5 like domain protein; SPTR: A4EG98 ABC transporter, periplasmic; InterPro IPR015168; COGs: COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components; KEGG: mch:Mchl_2049 NMT1/THI5 like domain protein; PFAM: NMT1/THI5 like
YP_003507660.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A6E1U7 Binding-protein-dependent transport systems inner membrane component; InterPro IPR000515; COGs: COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system permease component; KEGG: atc:AGR_C_4335 putative aliphatic sulfonates transport permease protein SsuC; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003507661.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A3W8Z3 ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit; InterPro IPR000515; COGs: COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system permease component; KEGG: rru:Rru_A3454 binding-protein dependent transport system inner membrane protein; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003507662.1	PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593:IPR017871; KEGG: bbt:BBta_6033 putative ABC transporter, ATP-binding protein; COGs: COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component; SPTR: A3X8N2 ABC transporter, ATP-binding protein; PFAM: ABC transporter
YP_003507663.1	PFAM: Lysine exporter protein (LYSE/YGGA); SPTR: A3H2P1 Putative uncharacterized protein; InterPro IPR001123; COGs: COG1280 Putative threonine efflux protein; KEGG: bpt:Bpet2422 RhtB family transporter; PFAM: LysE type translocator
YP_003507665.1	TIGRFAM: dihydropyrimidinase; PFAM: amidohydrolase; Amidohydrolase 3; InterPro IPR006680:IPR013108:IPR011778; KEGG: scl:sce6399 dihydropyrimidinase; COGs: COG0044 Dihydroorotase and related cyclic amidohydrolase; SPTR: A6CS57 Dihydropyrimidinase; PFAM: Amidohydrolase family; TIGRFAM: D-hydantoinase
YP_003507666.1	TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; InterProIPR001450:IPR001295:IPR017900:IPR001220:IPR 005720; KEGG: sus:Acid_7660 dihydropyrimidine dehydrogenase; COGs: COG0167 Dihydroorotate dehydrogenase; SPTR: A6CS58 Dihydropyrimidine dehydrogenase; PFAM: Dihydroorotate dehydrogenase; 4Fe-4S binding domain; TIGRFAM: dihydroorotate dehydrogenase (subfamily 1) family protein
YP_003507667.1	PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: A3I8S3 Glutamate synthasemall subunit; InterProIPR000759:IPR013027:IPR001450:IPR000103:IPR 001327:IPR006076; COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; KEGG: bcz:pE33L466_0262 putative oxidoreductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase
YP_003507669.1	TIGRFAM: ATP-dependent protease La; PRIAM: Endopeptidase La; PFAM: peptidase S16 lon domain protein; ATPase associated with various cellular activities AAA_3; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; InterProIPR001984:IPR003111:IPR008269:IPR011703:IPR 003959:IPR011704:IPR003593:IPR008268:IPR004815; SPTR: A1HP65 ATP-dependent protease La; KEGG: bha:BH3050 ATP-dependent proteinase La 1 (lon) (class III heat-shock protein); COGs: COG0466 ATP-dependent Lon protease; SMART: peptidase S16 lon domain protein; AAA ATPase; PFAM: ATPase family associated with various cellular activities (AAA); Lon protease (S16) C-terminal proteolytic domain; ATP-dependent protease La (LON) domain; TIGRFAM: ATP-dependent protease La
YP_003507671.1	PRIAM: NAD(P)(+) transhydrogenase (AB-specific); PFAM: NAD(P) transhydrogenase beta subunit; InterPro IPR004003; KEGG: eba:ebA4500 pyridine nucleotide transhydrogenase subunit beta; COGs: COG1282 NAD/NADP transhydrogenase beta subunit; SPTR: A7I7X4 NAD(P) transhydrogenase, beta subunit; PFAM: NAD(P) transhydrogenase beta subunit
YP_003507672.1	SPTR: A7I7X3 Pyridine nucleotide transhydrogenase subunit alpha; COGs: COG3288 NAD/NADP transhydrogenase alpha subunit; KEGG: tgr:Tgr7_0269 pyruvate kinase
YP_003507673.1	PRIAM: NAD(P)(+) transhydrogenase (AB-specific); PFAM: alanine dehydrogenase/PNT domain protein; InterPro IPR007886:IPR007698:IPR008142:IPR008143; KEGG: tgr:Tgr7_0268 NAD(P)(+) transhydrogenase (AB-specific); COGs: COG3288 NAD/NADP transhydrogenase alpha subunit; SPTR: A7I7X2 NAD(P)(+) transhydrogenase (AB-specific); PFAM: Alanine dehydrogenase/PNT, N-terminal domain; Alanine dehydrogenase/PNT, C-terminal domain; TIGRFAM: NAD(P) transhydrogenase, alpha subunit
YP_003507674.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; SPTR: B1L4H4 Short-chain dehydrogenase/reductase SDR; InterProIPR002347:IPR002424:IPR002198:IPR013968:IPR 001509; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); KEGG: vei:Veis_2457 short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase
YP_003507675.1	PFAM: aldo/keto reductase; SPTR: A7CQT0 Aldo/keto reductase; InterPro IPR001395; COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); KEGG: mms:mma_0249 hypothetical protein; PFAM: Aldo/keto reductase family
YP_003507676.1	PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; SPTR: A3ISG3 Phosphoglucomutase/phosphomannomutase; InterProIPR005841:IPR005844:IPR005846:IPR005843:IPR 005845:IPR016066; COGs: COG1109 Phosphomannomutase; KEGG: gme:Gmet_0135 phosphoglucomutase/phosphomannomutase alpha/beta/subunit; PFAM: Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
YP_003507677.1	InterPro IPR000873
YP_003507678.1	SPTR: A6G631 Putative uncharacterized protein
YP_003507679.1	PFAM: nitroreductase; SPTR: A6G632 Nitroreductase; InterPro IPR000415; COGs: COG0778 Nitroreductase; KEGG: glo:Glov_0123 nitroreductase; PFAM: Nitroreductase family
YP_003507680.1	KEGG: rce:RC1_1268 chalcone synthase, putative; COGs: COG3424 naringenin-chalcone synthase; SPTR: A6G633 Chalcone and stilbene synthases-like protein; PFAM: chalcone and stilbene synthase domain protein; FAE1/Type III polyketide synthase-like protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; InterPro IPR013601:IPR012328:IPR013747:IPR001099; PFAM: Chalcone and stilbene synthases, C-terminal domain; Chalcone and stilbene synthases, N-terminal domain
YP_003507681.1	PFAM: Isoprenylcysteine carboxyl methyltransferase; SPTR: A6G634 Putative uncharacterized protein; InterPro IPR007269; COGs: COG1755 conserved hypothetical protein; KEGG: bsu:BSU22040 hypothetical protein; PFAM: Isoprenylcysteine carboxyl methyltransferase (ICMT) family
YP_003507682.1	TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: LeuA allosteric (dimerisation) domain; pyruvate carboxyltransferase; InterPro IPR000891:IPR013709:IPR002034:IPR005675; KEGG: acp:A2cp1_1885 2-isopropylmalate synthase/homocitrate synthase family protein; COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; SPTR: Q8U298 Leua homolog alpha-isopropylmalate synthase related; PFAM: HMGL-like; LeuA allosteric (dimerisation) domain; TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein
YP_003507683.1	TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; InterPro IPR000891:IPR013709:IPR002034:IPR005671; KEGG: dvm:DvMF_1791 2-isopropylmalate synthase; COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; SPTR: Q9RUA9 2-isopropylmalate synthase; PFAM: LeuA allosteric (dimerisation) domain; HMGL-like; TIGRFAM: 2-isopropylmalate synthase, bacterial type
YP_003507684.1	TIGRFAM: ketol-acid reductoisomerase; PRIAM: Ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase catalytic domain protein; CoA-binding domain protein; acetohydroxy acid isomeroreductase; InterPro IPR003781:IPR013116:IPR000506:IPR013023; KEGG: afr:AFE_0747 ketol-acid reductoisomerase; COGs: COG0059 Ketol-acid reductoisomerase; SPTR: Q5SJ03 Ketol-acid reductoisomerase; PFAM: NADP oxidoreductase coenzyme F420-dependent; Acetohydroxy acid isomeroreductase, catalytic domain; TIGRFAM: ketol-acid reductoisomerase
YP_003507685.1	KEGG: sfu:Sfum_3022 acetolactate synthase, small subunit; COGs: COG0440 Acetolactate synthase small (regulatory) subunit; SPTR: Q2FM36 Acetolactate synthase, small subunit; TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; InterPro IPR002912:IPR004789; PFAM: ACT domain; Small subunit of acetolactate synthase; TIGRFAM: acetolactate synthase, small subunit
YP_003507686.1	PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; SPTR: A3CUF3 Acetolactate synthase, large subunit; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; COGs: COG0028 Thiamine pyrophosphate-requiring protein; InterProIPR012000:IPR011766:IPR012001:IPR000399:IPR 012846; KEGG: afw:Anae109_1877 acetolactate synthase, large subunit, biosynthetic type; PFAM: Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type
YP_003507687.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; SPTR: A4CPI7 Pyridine nucleotide-disulphide oxidoreductase, putative; KEGG: aba:Acid345_2686 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COGs: COG0492 Thioredoxin reductase; InterProIPR000759:IPR013027:IPR000103:IPR001327:IPR 006076; PFAM: Pyridine nucleotide-disulphide oxidoreductase
YP_003507688.1	PFAM: alpha/beta hydrolase fold; SPTR: A3VI51 Putative uncharacterized protein; InterPro IPR003089:IPR000639:IPR000073; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); KEGG: Os12g0636400; hypothetical protein; PFAM: alpha/beta hydrolase fold
YP_003507689.1	PFAM: Arginine-tRNA-protein transferase domain protein; SPTR: A1ZP87 Putative arginyl-tRNA--protein transferase; InterPro IPR007472:IPR007471; COGs: COG2935 Putative arginyl-tRNA:protein arginylyltransferase; KEGG: mca:MCA1791 arginyl-tRNA-protein transferase; PFAM: Arginine-tRNA-protein transferase, N terminus; Arginine-tRNA-protein transferase, C terminus
YP_003507690.1	TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; InterPro IPR006656:IPR006657:IPR010046; KEGG: bha:BH2530 formate dehydrogenase alpha chain; COGs: COG0243 Anaerobic dehydrogenase typically selenocysteine-containing; SPTR: A4BUS0 Probable formate dehydrogenase; PFAM: Molydopterin dinucleotide binding domain; Molybdopterin oxidoreductase; TIGRFAM: oxidoreductase alpha (molybdopterin) subunit
YP_003507691.1	TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase subunit FdhD; InterPro IPR003786; KEGG: scl:sce9192 formate dehydrogenase; COGs: COG1526 Uncharacterized protein required for formate dehydrogenase activity; SPTR: A0YPI0 Formate dehydrogenase accessory protein; PFAM: FdhD/NarQ family; TIGRFAM: formate dehydrogenase family accessory protein FdhD
YP_003507692.1	PFAM: protein of unknown function DUF503; SPTR: A8RS82 Putative uncharacterized protein; InterPro IPR007546; COGs: COG1550 conserved hypothetical protein; KEGG: ade:Adeh_1103 hypothetical protein; PFAM: Protein of unknown function (DUF503)
YP_003507694.1	TIGRFAM: acetyl-CoA acetyltransferase; PRIAM: Acetyl-CoA C-acetyltransferase; PFAM: Thiolase; InterPro IPR002155; KEGG: cko:CKO_00545 hypothetical protein; COGs: COG0183 Acetyl-CoA acetyltransferase; SPTR: Q974Z8 397aa long hypothetical acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal domain; Thiolase, C-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases
YP_003507696.1	TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; InterPro IPR001182:IPR011923; KEGG: cak:Caul_1493 rod shape-determining protein RodA; COGs: COG0772 Bacterial cell division membrane protein; SPTR: A3UE61 Rod shape-determining protein RodA; PFAM: Cell cycle protein; TIGRFAM: rod shape-determining protein RodA
YP_003507697.1	TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; InterPro IPR003369:IPR006312; KEGG: hhe:HH0708 component of sec-independent protein secretion pathway TatA; SPTR: Q1AUL2 Sec-independent protein translocase protein tatA/E homolog; PFAM: mttA/Hcf106 family; TIGRFAM: twin arginine-targeting protein translocase, TatA/E family
YP_003507698.1	PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593:IPR017871; KEGG: afe:Lferr_1847 ABC transporter related; COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; SPTR: A3W0M5 ABC transporter ATP-binding protein; PFAM: ABC transporter
YP_003507699.1	KEGG: ade:Adeh_0999 molybdate ABC transporter, inner membrane subunit; COGs: COG4149 ABC-type molybdate transport system permease component; SPTR: A4BVS0 Molybdenum ABC transporter, permease protein (ModB); TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; InterPro IPR000515:IPR011867; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: molybdate ABC transporter, permease protein
YP_003507700.1	TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; InterPro IPR006059:IPR005950; KEGG: glo:Glov_0450 molybdenum ABC transporter, periplasmic molybdate-binding protein; COGs: COG0725 ABC-type molybdate transport system periplasmic component; SPTR: A2UXF9 Molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein
YP_003507701.1	PFAM: transcriptional regulator PadR family protein; InterPro IPR005149; KEGG: aba:Acid345_4389 transcriptional regulator, PadR family; SPTR: A5XRP9 Transcriptional regulator, PadR family; PFAM: Transcriptional regulator PadR-like family
YP_003507702.1	PFAM: cytochrome c class I; InterPro IPR003088:IPR009056; KEGG: nar:Saro_1689 cytochrome c, class I; SPTR: Q5SME3 Cytochrome c-552; PFAM: Cytochrome c
YP_003507703.1	PFAM: cytochrome c class I; InterPro IPR003088:IPR009056; KEGG: gdi:GDI1808 putative cytochrome c-552; SPTR: Q5SME3 Cytochrome c-552; PFAM: Cytochrome c
YP_003507704.1	PFAM: extracellular solute-binding protein family 1; SPTR: A0YI65 Spermidine/putrescine ABC transporter spermidine/putrescine-binding protein; InterPro IPR001188:IPR006059; COGs: COG0687 Spermidine/putrescine-binding periplasmic protein; KEGG: scl:sce9153 spermidine/putrescine transport system substrate-binding protein; PFAM: Bacterial extracellular solute-binding protein
YP_003507705.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A0YI64 Polyamine transport protein PotC; InterPro IPR000515; COGs: COG1177 ABC-type spermidine/putrescine transport system permease component II; KEGG: bcy:Bcer98_1009 ornithine carbamoyltransferase; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003507706.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A0YI63 Spermidine/putrescine ABC transporter, permease protein; InterPro IPR000515; COGs: COG1176 ABC-type spermidine/putrescine transport system permease component I; KEGG: scl:sce9305 spermidine/putrescine ABC transporter, permease protein; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003507707.1	TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; InterProIPR003439:IPR013611:IPR003593:IPR017871:IPR 005893; KEGG: scl:sce9306 spermidine/putrescine transport system ATP-binding protein; COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; SPTR: Q1AS06 Spermidine/putrescine import ATP-binding protein potA; PFAM: TOBE domain; ABC transporter; TIGRFAM: spermidine/putrescine ABC transporter ATP-binding subunit
YP_003507708.1	PFAM: protein of unknown function DUF150; SPTR: Q56425 UPF0090 protein TTHA0702; InterPro IPR003728; COGs: COG0779 conserved hypothetical protein; KEGG: noc:Noc_2122 hypothetical protein; PFAM: Uncharacterised BCR, YhbC family COG0779
YP_003507709.1	TIGRFAM: transcription termination factor NusA; PFAM: NusA domain protein; RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; KH domain protein; InterProIPR003029:IPR013735:IPR004087:IPR004088:IPR 010213; KEGG: gur:Gura_1899 transcription elongation factor NusA; COGs: COG0195 Transcription elongation factor; SPTR: P48514 Transcription elongation protein nusA; PFAM: S1 RNA binding domain; NusA N-terminal domain; TIGRFAM: transcription termination factor NusA
YP_003507710.1	TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; translation initiation factor IF-2 domain protein; Miro domain protein; elongation factor Tu domain 2 protein; InterProIPR006847:IPR013684:IPR004161:IPR000795:IPR 000178:IPR005225; KEGG: scl:sce5798 translation initiation factor IF-2; COGs: COG0532 Translation initiation factor 2 (IF-2; GTPase); SPTR: P48515 Translation initiation factor IF-2; PFAM: Translation initiation factor IF-2, N-terminal region; Elongation factor Tu domain 2; Elongation factor Tu GTP binding domain; TIGRFAM: translation initiation factor IF-2; small GTP-binding protein domain
YP_003507712.1	TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein SecF; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein; InterPro IPR003335:IPR000731:IPR005665:IPR005791; KEGG: secD; protein-export membrane protein SecD ; K03072 preprotein translocase SecD subunit; K03074 preprotein translocase SecF subunit; COGs: COG0342 Preprotein translocase subunit SecD; SPTR: A3VXM7 Protein-export membrane protein SecD; PFAM: Protein export membrane protein; SecD/SecF GG Motif; TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecD; protein-export membrane protein SecF
YP_003507713.1	TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; PFAM: glutamine amidotransferase class-I; GMP synthase domain protein; PP-loop domain protein; InterProIPR006220:IPR011702:IPR001317:IPR011063:IPR 001674:IPR000991:IPR004739; KEGG: ank:AnaeK_1521 GMP synthase, large subunit; COGs: COG0519 GMP synthase PP-ATPase domain/subunit; SPTR: Q5SI28 GMP synthase [glutamine-hydrolyzing]; PFAM: PP-loop family; GMP synthase C terminal domain; Glutamine amidotransferase class-I; TIGRFAM: GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit; GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit
YP_003507714.1	KEGG: dvl:Dvul_1916 single-stranded nucleic acid binding R3H domain-containing protein; SPTR: A6GDD6 Putative uncharacterized protein
YP_003507716.1	SPTR: A0YM46 Phage SPO1 DNA polymerase-related protein; KEGG: nis:NIS_0687 uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase superfamily; InterPro IPR005122:IPR005273; TIGRFAM: phage SPO1 DNA polymerase-related protein; COGs: COG1573 Uracil-DNA glycosylase; PFAM: Uracil DNA glycosylase superfamily; TIGRFAM: uracil-DNA glycosylase, family 4
YP_003507717.1	PFAM: protein of unknown function DUF6 transmembrane; InterPro IPR000620; KEGG: cvi:CV_0552 hypothetical protein; SPTR: A1HU11 Putative uncharacterized protein; PFAM: Integral membrane protein DUF6
YP_003507718.1	TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PRIAM: IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme formylation region; MGS domain protein; InterPro IPR011607:IPR013982:IPR002695; SPTR: Q1J119 Bifunctional purine biosynthesis protein purH; KEGG: bha:BH0633 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; COGs: COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful); SMART: AICARFT/IMPCHase bienzyme formylation region; PFAM: AICARFT/IMPCHase bienzyme; MGS-like domain; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
YP_003507719.1	KEGG: nis:NIS_0988 GatB/YqeY domain-containing protein; SPTR: A7AIU8 Putative uncharacterized protein; PFAM: Yqey-like protein
YP_003507722.1	KEGG: dvm:DvMF_1304 hypothetical protein
YP_003507723.1	PFAM: Baseplate J family protein; SPTR: A6NQ14 Putative uncharacterized protein; InterPro IPR006949; COGs: COG3299 Uncharacterized homolog of phage Mu protein gp47; KEGG: dvu:DVU1102 baseplate assembly protein, putative; PFAM: Baseplate J-like protein
YP_003507728.1	KEGG: csa:Csal_1375 phage tail tape measure protein TP901, core region; SPTR: A4JWS3 Gp26, bacteriophage membrane protein
YP_003507731.1	KEGG: dvu:DVU1111 hypothetical protein
YP_003507734.1	KEGG: rpt:Rpal_3352 phage virion morphogenesis protein; SPTR: A6DXY2 Phage virion morphogenesis (Putative tail completion) protein; TIGRFAM: phage virion morphogenesis (putative tail completion) protein
YP_003507736.1	PFAM: protein of unknown function DUF1320; SPTR: Q5ZQX5 Putative uncharacterized protein; InterPro IPR009752; COGs: COG4387 Mu-like prophage protein gp36; KEGG: nma:NMA1844 hypothetical protein; PFAM: Protein of unknown function (DUF1320)
YP_003507738.1	SPTR: B7SDU5 Putative uncharacterized protein ORF35; COGs: COG4397 Mu-like prophage major head subunit gpT; KEGG: ecg:E2348C_2664 predicted major head subunit protein; PFAM: Mu-like prophage major head subunit gpT
YP_003507739.1	KEGG: pag:PLES_15801 hypothetical protein; SPTR: Q6TM68 Putative uncharacterized protein orf34
YP_003507740.1	SPTR: A7JS43 Mu bacteriophage protein I; COGs: COG4388 Mu-like prophage I protein; KEGG: I protein; PFAM: Mu-like prophage I protein
YP_003507743.1	TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM: putative head morphogenesis protein SPP1 gp7; InterPro IPR006528; KEGG: sfu:Sfum_1878 phage putative head morphogenesis protein, SPP1 gp7 family; SPTR: A3GNG1 Putative phage-related protein; PFAM: Phage Mu protein F like protein; TIGRFAM: phage putative head morphogenesis protein, SPP1 gp7 family
YP_003507744.1	PFAM: protein of unknown function DUF935; SPTR: A2UW80 Putative uncharacterized protein; InterPro IPR009279; COGs: COG4383 Mu-like prophage protein gp29; KEGG: sat:SYN_02303 Mu-like prophage FluMu protein GP29; PFAM: Protein of unknown function (DUF935)
YP_003507745.1	PFAM: protein of unknown function DUF264; SPTR: A4NHT4 Prophage MuMc02, terminase, ATPase subunit, putative; InterPro IPR004921:IPR002993; COGs: COG4373 Mu-like prophage FluMu protein gp28; KEGG: mca:MCA2933 prophage MuMc02, terminase, ATPase subunit, putative; PFAM: Terminase-like family
YP_003507746.1	InterPro IPR001837
YP_003507750.1	KEGG: predicted protein; PFAM: Sugar-specific transcriptional regulator TrmB
YP_003507753.1	KEGG: nwi:Nwi_2888 ribonucleotide-diphosphate reductase subunit alpha
YP_003507762.1	KEGG: oca:OCAR_5559 hypothetical protein
YP_003507763.1	KEGG: hypothetical protein
YP_003507765.1	SMART: AAA ATPase; InterPro IPR003593; COGs: COG2842 Uncharacterized ATPase putative transposase; KEGG: nmn:NMCC_1000 phage transposase
YP_003507766.1	PFAM: Integrase catalytic region; InterPro IPR001584; KEGG: rpt:Rpal_3365 integrase catalytic region; SPTR: A0P3J2 Transposase and inactivated derivative; PFAM: Integrase core domain
YP_003507767.1	PFAM: transposase IS4 family protein; InterPro IPR002559; KEGG: tdn:Suden_1713 transposase IS4; SPTR: A1ZSG8 Transposase, IS4; PFAM: Transposase DDE domain
YP_003507769.1	PFAM: peptidase S24 and S26 domain protein; SPTR: A7VTE0 Putative uncharacterized protein; InterPro IPR011056; COGs: COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidase); KEGG: bpy:Bphyt_1772 transcriptional repressor, LexA family; PFAM: Peptidase S24-like
YP_003507771.1	PFAM: Transposase DDE domain
YP_003507772.1	COGs: COG2001 conserved hypothetical protein; InterPro IPR003444; KEGG: bha:BH2576 cell division protein MraZ; PFAM: protein of unknown function UPF0040; SPTR: Q5SJD9 Protein mraZ; TIGRFAM: MraZ protein; PFAM: MraZ protein; TIGRFAM: mraZ protein
YP_003507773.1	TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; InterPro IPR002903; KEGG: ccs:CCNA_02645 S-adenosyl-methyltransferase MraW; COGs: COG0275 S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis; SPTR: Q5SJD8 S-adenosyl-L-methionine-dependent methyltransferase mraW; PFAM: MraW methylase family; TIGRFAM: S-adenosyl-methyltransferase MraW
YP_003507775.1	PRIAM: Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; InterPro IPR001460; KEGG: bac:BamMC406_4123 peptidoglycan glycosyltransferase; COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; SPTR: A2VZ98 Cell division protein FtsI/penicillin-binding protein 2; PFAM: Penicillin binding protein transpeptidase domain
YP_003507776.1	TIGRFAM:UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-d iaminopimelate/D-alanyl-D-alanylligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; InterPro IPR000713:IPR004101:IPR013221:IPR005863; KEGG: pca:Pcar_2206 UDP-N-acetylmuramyl pentapeptide synthase; COGs: COG0770 UDP-N-acetylmuramyl pentapeptide synthase; SPTR: A8SE28 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; PFAM: Mur ligase family, catalytic domain; Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
YP_003507778.1	PRIAM:Phospho-N-acetylmuramoyl-pentapeptide-transfe rase; PFAM: glycosyl transferase family 4; InterPro IPR000715:IPR003524; KEGG: sal:Sala_1884 phospho-N-acetylmuramoyl-pentapeptide-transferase; COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; SPTR: Q9RTD0 Phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: Glycosyl transferase family 4; Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase
YP_003507779.1	TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; InterPro IPR004101:IPR013221:IPR005762; KEGG: tgr:Tgr7_0767 UDP-N-acetylmuramoylalanine/D-glutamate ligase; COGs: COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase; SPTR: Q5SJD2 UDP-N-acetylmuramoylalanine--D-glutamate ligase; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase
YP_003507780.1	PFAM: cell cycle protein; SPTR: A6DV87 Rod shape-determining protein MreD; InterPro IPR001182:IPR006162; COGs: COG0772 Bacterial cell division membrane protein; KEGG: bha:BH3276 stage V sporulation protein E; PFAM: Cell cycle protein
YP_003507781.1	PRIAM: Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; PFAM: glycosyl transferase family 28; Glycosyltransferase 28 domain; InterPro IPR004276:IPR007235; KEGG: pap:PSPA7_4984 N-acetylglucosaminyl transferase; COGs: COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; SPTR: Q72JP9 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: Glycosyltransferase family 28 N-terminal domain; Glycosyltransferase family 28 C-terminal domain; TIGRFAM: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase
YP_003507782.1	InterPro IPR000713:IPR004101:IPR013221:IPR005758; TIGRFAM: UDP-N-acetylmuramate/alanine ligase; COGs: COG0773 UDP-N-acetylmuramate-alanine ligase; SPTR: Q1IXV8 UDP-N-acetylmuramate--L-alanine ligase; KEGG: gbm:Gbem_0492 UDP-N-acetylmuramate--alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; PFAM: Mur ligase family, catalytic domain; Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramate--alanine ligase
YP_003507783.1	TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PRIAM: UDP-N-acetylmuramate dehydrogenase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; FAD linked oxidase domain protein; InterPro IPR006094:IPR011601:IPR003170; KEGG: azc:AZC_4560 UDP-N-acetylenolpyruvoylglucosamine reductase; COGs: COG0812 UDP-N-acetylmuramate dehydrogenase; SPTR: Q72JP7 UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; FAD binding domain; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase
YP_003507784.1	PFAM: Polypeptide-transport-associated domain protein FtsQ-type; InterPro IPR013685; KEGG: rpc:RPC_3300 cell division protein FtsQ; PFAM: POTRA domain, FtsQ-type
YP_003507785.1	TIGRFAM: cell division protein FtsA; PFAM: cell division protein FtsA; InterPro IPR003494; KEGG: tcx:Tcr_0587 cell division protein FtsA; COGs: COG0849 Actin-like ATPase involved in cell division; SPTR: A4BQI1 Cell division protein FtsA; PFAM: Cell division protein FtsA; TIGRFAM: cell division protein FtsA
YP_003507786.1	TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ domain protein; InterPro IPR000158:IPR008280:IPR003008; KEGG: bcy:Bcer98_2555 cell division protein FtsZ; COGs: COG0206 Cell division GTPase; SPTR: A0NKL8 Cell division protein ftsZ; PFAM: Tubulin/FtsZ family, C-terminal domain; Tubulin/FtsZ family, GTPase domain; TIGRFAM: cell division protein FtsZ
YP_003507787.1	TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PRIAM: Crossover junction endodeoxyribonuclease; PFAM: Crossover junction endodeoxyribonuclease RuvC; InterPro IPR002176; KEGG: plu:plu2110 Holliday junction resolvase; COGs: COG0817 Holliday junction resolvasome endonuclease subunit; SPTR: Q5SJC4 Crossover junction endodeoxyribonuclease ruvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC
YP_003507788.1	KEGG: bcj:BCAS0236 putative haemagglutinin-related autotransporter protein
YP_003507790.1	PFAM: protein of unknown function DUF454; SPTR: A6DSS7 Putative uncharacterized protein; InterPro IPR007401; COGs: COG2832 conserved hypothetical protein; KEGG: glo:Glov_2725 protein of unknown function DUF454; PFAM: Protein of unknown function (DUF454)
YP_003507791.1	PFAM: extracellular solute-binding protein family 1; SPTR: A4U8T5 Permease; InterPro IPR006059; COGs: COG1840 ABC-type Fe3+ transport system periplasmic component; KEGG: mxa:MXAN_0770 iron ABC transporter, periplasmic iron-binding protein; PFAM: Bacterial extracellular solute-binding protein
YP_003507792.1	SPTR: A4AHD3 Putative integral membrane protein
YP_003507793.1	PFAM: lipopolysaccharide biosynthesis protein; InterPro IPR003856; KEGG: cvi:CV_4054 hypothetical protein; PFAM: Chain length determinant protein
YP_003507794.1	PFAM: O-antigen polymerase; InterPro IPR007016; KEGG: afr:AFE_2896 O-antigen polymerase family protein; SPTR: A1HMD6 O-antigen polymerase; PFAM: O-Antigen Polymerase
YP_003507795.1	TIGRFAM: Undecaprenyl-phosphate galactose phosphotransferase, WbaP; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PRIAM: Undecaprenyl-phosphate galactose phosphotransferase; PFAM: sugar transferase; InterPro IPR003362:IPR017475:IPR017472; KEGG: noc:Noc_1508 undecaprenyl-phosphate galactosephosphotransferase; COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; SPTR: A6PMY3 Undecaprenyl-phosphate galactose phosphotransferase; PFAM: Bacterial sugar transferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; Undecaprenyl-phosphate galactose phosphotransferase, WbaP
YP_003507796.1	PFAM: glycosyl transferase group 1; SPTR: A7J0P7 Putative glycosyl transferase; InterPro IPR001296; COGs: COG0438 Glycosyltransferase; KEGG: sme:SMc01790 putative glycosyltransferase protein; PFAM: Glycosyl transferases group 1
YP_003507797.1	InterPro IPR001173; KEGG: bph:Bphy_2269 glycosyl transferase family protein; SPTR: A4ME70 Glycosyl transferase, group 2 family protein; PFAM: glycosyl transferase family 2; PFAM: Glycosyl transferase family 2
YP_003507798.1	PFAM: O-antigen polymerase; InterPro IPR007016; KEGG: cja:CJA_3412 O-antigen polymerase family protein; SPTR: A0ZHE8 O-antigen polymerase; PFAM: O-Antigen Polymerase
YP_003507799.1	PFAM: glycosyl transferase family 2; SPTR: A5ZFA0 Putative uncharacterized protein; InterPro IPR001173; COGs: COG1216 glycosyltransferase; KEGG: bcj:BCAL3234 glycosyltransferase; PFAM: Glycosyl transferase family 2
YP_003507800.1	TIGRFAM: UDP-galactopyranose mutase; PRIAM: UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase-like; InterPro IPR015899:IPR004379; KEGG: cju:C8J_1343 hypothetical protein; COGs: COG0562 UDP-galactopyranose mutase; SPTR: O26444 UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase; FAD dependent oxidoreductase; TIGRFAM: UDP-galactopyranose mutase
YP_003507801.1	PFAM: polysaccharide biosynthesis protein; SPTR: O26447 O-antigen transporter; InterPro IPR002797; COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; KEGG: bpy:Bphyt_0849 polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein
YP_003507802.1	KEGG: gbm:Gbem_1070 lipopolysaccharide biosynthesis protein
YP_003507803.1	PFAM: dTDP-4-dehydrorhamnose reductase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; SPTR: Q96Z61 273aa long hypothetical dTDP-4-dehydrorhamnose reductase; InterProIPR013120:IPR002225:IPR003869:IPR002198:IPR 005913:IPR001509; COGs: COG1091 dTDP-4-dehydrorhamnose reductase; KEGG: rec:RHECIAT_CH0001583 dTDP-4-dehydrorhamnose reductase protein; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: dTDP-4-dehydrorhamnose reductase
YP_003507804.1	TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; InterProIPR013120:IPR002225:IPR003869:IPR002198:IPR 005913:IPR001509:IPR005888; KEGG: mxa:MXAN_4613 dTDP-glucose 4,6-dehydratase; COGs: COG1088 dTDP-D-glucose 4 6-dehydratase; SPTR: O27817 DTDP-glucose 4,6-dehydratase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: dTDP-glucose 4,6-dehydratase
YP_003507805.1	SPTR: Q7WY56 Spore coat polysaccharide biosynthesis protein spsL; COGs: COG1898 dTDP-4-dehydrorhamnose 3 5-epimerase; KEGG: bsu:BSU37810 spore coat polysaccharide synthesis; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase
YP_003507806.1	PFAM: glycosyl transferase family 2; SPTR: A5WSI0 dTDP-RHA:A-D-GlcNAc-diphosphoryl polyprenol-A-3-L-rhamnosyl transferase wbbL1; InterPro IPR001173; COGs: COG1216 glycosyltransferase; KEGG: afr:AFE_0233 glycosyl transferase, group 2 family protein; PFAM: Glycosyl transferase family 2
YP_003507807.1	SPTR: A3Z3F5 PilT protein, N-terminal; KEGG: bmj:BMULJ_04727 PilT protein domain protein; PFAM: PilT protein domain protein; InterPro IPR002716; COGs: COG3744 conserved hypothetical protein; PFAM: PIN domain
YP_003507808.1	TIGRFAM: prevent-host-death family protein; InterPro IPR006442; KEGG: reh:H16_A3392 hypothetical protein; SPTR: A3JGK3 Putative uncharacterized protein; TIGRFAM: prevent-host-death family protein
YP_003507809.1	TIGRFAM: glucose-1-phosphate thymidyltransferase; PFAM: Nucleotidyl transferase; SPTR: A0B7R8 Glucose-1-phosphate thymidyltransferase; KEGG: sit:TM1040_3859 glucose-1-phosphate thymidylyltransferase; COGs: COG1209 dTDP-glucose pyrophosphorylase; InterPro IPR005835:IPR005908; PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase, short form; glucose-1-phosphate thymidylylransferase, long form
YP_003507810.1	PFAM: class II aldolase/adducin family protein; InterPro IPR001303; COGs: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerase and aldolase; KEGG: bha:BH1952 hypothetical protein; PFAM: Class II Aldolase and Adducin N-terminal domain
YP_003507811.1	KEGG: bcy:Bcer98_3344 hypothetical protein
YP_003507812.1	PFAM: SNARE associated Golgi protein; SPTR: A3XH66 Putative uncharacterized protein; InterPro IPR015414; COGs: COG0398 conserved hypothetical protein; KEGG: noc:Noc_1842 hypothetical protein; PFAM: SNARE associated Golgi protein
YP_003507813.1	PFAM: Silent information regulator protein Sir2; SPTR: Q72IV5 NAD-dependent deacetylase; InterPro IPR003000:IPR001020; COGs: COG0846 NAD-dependent protein deacetylase SIR2 family; KEGG: sus:Acid_7056 silent information regulator protein Sir2; PFAM: Sir2 family
YP_003507814.1	TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: YjeF-family domain protein; protein of unknown function UPF0031; InterPro IPR000631:IPR004443:IPR017953; KEGG: aeh:Mlg_0568 carbohydrate kinase, YjeF related protein; COGs: COG0063 sugar kinase; SPTR: A0Y810 Putative uncharacterized protein; PFAM: Carbohydrate kinase; YjeF-related protein N-terminus; TIGRFAM: yjeF C-terminal region, hydroxyethylthiazole kinase-related; yjeF N-terminal region
YP_003507815.1	KEGG: vsa:VSAL_I0672 putative chromate transporter
YP_003507816.1	TIGRFAM: thiamine-phosphate pyrophosphorylase; PRIAM: Thiamine-phosphate diphosphorylase; PFAM: thiamine monophosphate synthase; InterPro IPR003733; KEGG: bha:BH1431 thiamine phosphate pyrophosphorylase; COGs: COG0352 Thiamine monophosphate synthase; SPTR: Q5SKG9 Thiamine-phosphate pyrophosphorylase; PFAM: Thiamine monophosphate synthase/TENI; TIGRFAM: thiamine-phosphate pyrophosphorylase
YP_003507817.1	TIGRFAM: thiamine biosynthesis protein ThiS; InterPro IPR003749:IPR010035; KEGG: mxa:MXAN_3269 thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; PFAM: ThiS family; TIGRFAM: thiamine biosynthesis protein ThiS
YP_003507818.1	PFAM: thiazole biosynthesis family protein; SPTR: Q72KN9 Thiazole biosynthesis protein thiG; InterPro IPR008867; COGs: COG2022 Uncharacterized protein of thiazole biosynthesis; KEGG: sfu:Sfum_1821 thiazole synthase; PFAM: Thiazole biosynthesis protein ThiG
YP_003507819.1	PFAM: FAD dependent oxidoreductase; SPTR: O31616 Glycine oxidase; InterPro IPR006076; COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); KEGG: mno:Mnod_7518 glycine oxidase ThiO; PFAM: FAD dependent oxidoreductase
YP_003507820.1	TIGRFAM: thiamine biosynthesis protein ThiC; PFAM: thiamine biosynthesis protein ThiC; InterPro IPR002817; KEGG: ppd:Ppro_2596 thiamine biosynthesis protein ThiC; COGs: COG0422 Thiamine biosynthesis protein ThiC; SPTR: Q5SKG5 Thiamine biosynthesis protein thiC; PFAM: ThiC family; TIGRFAM: thiamine biosynthesis protein ThiC
YP_003507821.1	PFAM: Phosphomethylpyrimidine kinase type-1; SPTR: A2U7C5 Phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; COGs: COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; InterPro IPR013749:IPR004399; KEGG: sus:Acid_1226 phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase
YP_003507822.1	TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PRIAM: Phosphopantothenate--cysteine ligase; PFAM: DNA/pantothenate metabolism flavoprotein domain protein; flavoprotein; InterPro IPR007085:IPR003382:IPR005252; KEGG: bha:BH2510 flavoprotein; COGs: COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase; SPTR: A1HMY1 Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: Flavoprotein; DNA / pantothenate metabolism flavoprotein; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic
YP_003507823.1	COGs: COG1521 Putative transcriptional regulator protein; InterPro IPR004619; KEGG: glo:Glov_1318 putative transcriptional acitvator, Baf family; PFAM: Bvg accessory factor; SPTR: A1HRR0 Putative transcriptional acitvator, Baf family; TIGRFAM: transcriptional activator, Baf family; PFAM: Bordetella pertussis Bvg accessory factor family; TIGRFAM: pantothenate kinase, type III
YP_003507824.1	KEGG: gur:Gura_2187 hypothetical protein
YP_003507825.1	TIGRFAM: homoserine kinase; PRIAM: Homoserine kinase; PFAM: GHMP kinase; GHMP kinase domain protein; InterPro IPR000870:IPR013750:IPR006204:IPR006203; KEGG: sus:Acid_0902 homoserine kinase; COGs: COG0083 Homoserine kinase; SPTR: Q5SIH5 Homoserine kinase; PFAM: GHMP kinases N terminal domain; GHMP kinases C terminal; TIGRFAM: homoserine kinase
YP_003507827.1	TIGRFAM: phosphoglucomutase, alpha-D-glucose phosphate-specific; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; InterProIPR005844:IPR005846:IPR005843:IPR005845:IPR 016066:IPR005852; KEGG: gur:Gura_2654 phosphoglucomutase; COGs: COG0033 Phosphoglucomutase; SPTR: A3KIY7 Putative phosphoglucomutase; PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; TIGRFAM: phosphoglucomutase, alpha-D-glucose phosphate-specific
YP_003507828.1	PFAM: FAD dependent oxidoreductase; SPTR: A3ESQ0 Putative dehydrogenase; InterPro IPR006076; COGs: COG0579 dehydrogenase; KEGG: mgm:Mmc1_3667 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase
YP_003507829.1	PFAM: MscS Mechanosensitive ion channel; SPTR: A3ILV2 MscS Mechanosensitive ion channel; InterPro IPR006685; COGs: COG0668 Small-conductance mechanosensitive channel; KEGG: azc:AZC_2392 mechanosensitive ion channel; PFAM: Mechanosensitive ion channel
YP_003507830.1	TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein; InterPro IPR003664; KEGG: gsu:GSU1600 putative glycerol-3-phosphate acyltransferase PlsX; COGs: COG0416 Fatty acid/phospholipid biosynthesis enzyme; SPTR: Q5SHI4 Fatty acid/phospholipid synthesis protein plsX; PFAM: Fatty acid synthesis protein; TIGRFAM: fatty acid/phospholipid synthesis protein PlsX
YP_003507831.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; InterPro IPR001761:IPR000843; KEGG: smd:Smed_4315 periplasmic binding protein/LacI transcriptional regulator; COGs: COG1609 Transcriptional regulators; SPTR: A7K3D6 Periplasmic binding proteins and sugar binding domain of the LacI family, putative; PFAM: Bacterial regulatory proteins, lacI family; Periplasmic binding proteins and sugar binding domain of the LacI family
YP_003507832.1	PFAM: carbohydrate kinase FGGY; SPTR: P94524 Ribulokinase; InterPro IPR000577; COGs: COG1069 Ribulose kinase; KEGG: bsu:BSU28790 ribulokinase; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: L-ribulokinase
YP_003507833.1	PFAM: extracellular solute-binding protein family 1; SPTR: A4LIL1 Putative sorbitol/mannitol ABC transporter, periplasmic sorbitol/mannitol-binding protein; InterPro IPR006059; COGs: COG1653 ABC-type sugar transport system periplasmic component; KEGG: bph:Bphy_0490 extracellular solute-binding protein; PFAM: Bacterial extracellular solute-binding protein
YP_003507834.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A3YBC3 Probable binding-protein-dependent maltose/mannitol transport protein; InterPro IPR000515; COGs: COG1175 ABC-type sugar transport systems permease components; KEGG: oan:Oant_3853 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003507835.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A3YBC4 Binding-protein-dependent transport systems inner membrane component; InterPro IPR000515; COGs: COG0395 ABC-type sugar transport system permease component; KEGG: csa:Csal_0635 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003507836.1	InterPro IPR013154:IPR013149:IPR002328; PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; COGs: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenase; KEGG: scl:sce9297 putative zinc-binding dehydrogenase; SPTR: B6QKL0 Alcohol dehydrogenase, zinc-containing, putative; PFAM: Zinc-binding dehydrogenase; Alcohol dehydrogenase GroES-like domain; TIGRFAM: 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase
YP_003507837.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; SPTR: A3TPS9 Putative uncharacterized protein; InterPro IPR002347:IPR002198:IPR013968; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); KEGG: acr:Acry_0463 short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase
YP_003507838.1	PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; SPTR: A7VQC8 Putative uncharacterized protein; InterPro IPR013154:IPR013149; COGs: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenase; KEGG: rpc:RPC_1044 alcohol dehydrogenase GroES-like protein; PFAM: Zinc-binding dehydrogenase; Alcohol dehydrogenase GroES-like domain; TIGRFAM: 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase
YP_003507839.1	PFAM: cytochrome P450; SPTR: A5HNX5 Cytochrome P450; InterPro IPR002397:IPR001128; COGs: COG2124 Cytochrome P450; KEGG: smd:Smed_0869 cytochrome P450; PFAM: Cytochrome P450
YP_003507840.1	TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; InterPro IPR006662:IPR013766:IPR017937:IPR005746; KEGG: sun:SUN_0233 thioredoxin; COGs: COG3118 Thioredoxin domain-containing protein; SPTR: P0A0K5 Thioredoxin; PFAM: Thioredoxin; TIGRFAM: thioredoxin
YP_003507841.1	PFAM: protein of unknown function DUF309; InterPro IPR005500; KEGG: dde:Dde_0073 hypothetical protein; SPTR: A9A219 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF309)
YP_003507842.1	PFAM: Rieske [2Fe-2S] domain protein; InterPro IPR005805:IPR005806; KEGG: afw:Anae109_0241 Rieske (2Fe-2S) domain-containing protein; SPTR: A3IWM7 Cytochrome b6/f-complex iron-sulfur protein; PFAM: Rieske [2Fe-2S] domain; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence
YP_003507843.1	PFAM: Alkaline phosphatase; SMART: Alkaline phosphatase; InterPro IPR001952:IPR006311; KEGG: gur:Gura_2889 alkaline phosphatase; COGs: COG1785 Alkaline phosphatase; SPTR: A6EH73 Alkaline phosphatase, putative; PFAM: Alkaline phosphatase; TAT (twin-arginine translocation) pathway signal sequence
YP_003507844.1	PFAM: L-asparaginase II; SPTR: A2QBE4 Remark: introduction of the R. etli ans operon; InterPro IPR010349; COGs: COG4448 L-asparaginase II; KEGG: hypothetical protein; PFAM: L-asparaginase II
YP_003507845.1	SPTR: A6BXW8 Putative exported protein; InterPro IPR002052; COGs: COG4222 conserved hypothetical protein; KEGG: abb:ABBFA_003338 hypothetical protein
YP_003507846.1	TIGRFAM: orotidine 5'-phosphate decarboxylase; PRIAM: Orotidine-5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; InterPro IPR001754:IPR011995; KEGG: hne:HNE_0128 orotidine 5'-phosphate decarboxylase; COGs: COG0284 Orotidine-5'-phosphate decarboxylase; SPTR: P96076 Orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase / HUMPS family; TIGRFAM: orotidine 5'-phosphate decarboxylase, subfamily 2
YP_003507847.1	PFAM: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; SMART: Allophanate hydrolase subunit 1; Allophanate hydrolase subunit 2; InterPro IPR003833:IPR003778:IPR010016; KEGG: aav:Aave_3511 allophanate hydrolase subunit 2; COGs: COG1984 Allophanate hydrolase subunit 2; SPTR: A6EK52 Putative allophanate hydrolase; PFAM: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; TIGRFAM: conserved hypothetical protein TIGR00370; biotin-dependent carboxylase uncharacterized domain
YP_003507848.1	PFAM: LamB/YcsF family protein; SPTR: Q53WG6 UPF0271 protein TTHB195; InterPro IPR005501; COGs: COG1540 conserved hypothetical protein; KEGG: sfu:Sfum_3392 LamB/YcsF family protein; PFAM: LamB/YcsF family
YP_003507849.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; InterPro IPR010656:IPR004681; KEGG: dps:DP1357 DctM (C4-dicarboxylate permease, large subunit); COGs: COG1593 TRAP-type C4-dicarboxylate transport system large permease component; SPTR: A0NVR6 DctM (C4-dicarboxylate permease, large subunit); PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit
YP_003507850.1	PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; InterPro IPR007387; KEGG: azc:AZC_0169 hypothetical protein; SPTR: A3YD98 Probable DctQ (C4-dicarboxylate permease, small subunit); PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component
YP_003507851.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; SPTR: A0NVR8 DctP (Periplasmic C4-dicarboxylate binding protein); InterPro IPR004682; COGs: COG1638 TRAP-type C4-dicarboxylate transport system periplasmic component; KEGG: hch:HCH_06434 TRAP-type C4-dicarboxylate transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding protein, family 7
YP_003507852.1	PFAM: Transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR; InterPro IPR014757:IPR005471; KEGG: bce:BC3069 transcriptional regulator KipR; COGs: COG1414 Transcriptional regulator; SPTR: A3I8F6 Transcriptional regulator kipR; PFAM: Bacterial transcriptional regulator; IclR helix-turn-helix domain
YP_003507853.1	PFAM: deoxyhypusine synthase; SPTR: A3HSF7 Deoxyhypusine synthase family protein; InterPro IPR002773; COGs: COG1899 Deoxyhypusine synthase; KEGG: bba:Bd2349 hypothetical protein; PFAM: Deoxyhypusine synthase; TIGRFAM: deoxyhypusine synthase
YP_003507854.1	KEGG: bba:Bd2515 sec-independent protein translocase protein TatC; SPTR: A4A3G3 Putative uncharacterized protein
YP_003507855.1	KEGG: psa:PST_1235 hypothetical protein; SPTR: A1HT77 Putative uncharacterized protein
YP_003507856.1	TIGRFAM: GTP-binding protein Era; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; Miro domain protein; InterProIPR006073:IPR001806:IPR004044:IPR013684:IPR 002917:IPR005225:IPR005662; KEGG: gsu:GSU2226 GTP-binding protein Era; COGs: COG1159 GTPase; SPTR: Q1IXB4 GTP-binding protein era homolog; PFAM: GTPase of unknown function; KH domain; TIGRFAM: GTP-binding protein Era; small GTP-binding protein domain
YP_003507857.1	TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; transcriptional regulator TrmB; InterPro IPR002831:IPR003488; KEGG: gme:Gmet_0890 smf protein; COGs: COG0758 Rossmann fold nucleotide-binding protein involved in DNA uptake; SPTR: A6C3Y5 DNA processing chain A; PFAM: DNA recombination-mediator protein A; Sugar-specific transcriptional regulator TrmB; TIGRFAM: DNA protecting protein DprA
YP_003507858.1	TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase DuS; InterPro IPR001269:IPR004653; KEGG: tgr:Tgr7_1852 tRNA-dihydrouridine synthase A; COGs: COG0042 tRNA-dihydrouridine synthase; SPTR: P72872 Probable tRNA-dihydrouridine synthase 2; PFAM: Dihydrouridine synthase (Dus); TIGRFAM: tRNA dihydrouridine synthase A
YP_003507859.1	TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PRIAM: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; PFAM: LytB protein; InterPro IPR003451; KEGG: reh:H16_A3031 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; COGs: COG0761 Penicillin tolerance protein; SPTR: Q72G65 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; PFAM: LytB protein; TIGRFAM: (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming)
YP_003507860.1	PRIAM: Carboxypeptidase Taq; PFAM: peptidase M32 carboxypeptidase Taq metallopeptidase; SPTR: P42663 Thermostable carboxypeptidase 1; KEGG: sfu:Sfum_1978 carboxypeptidase Taq; COGs: COG2317 Zn-dependent carboxypeptidase; InterPro IPR001333; PFAM: Carboxypeptidase Taq (M32) metallopeptidase
YP_003507861.1	PRIAM: Alpha-glucosidase; PFAM: glycoside hydrolase family 31; InterPro IPR000322; KEGG: scl:sce3449 Alpha-glucosidase family protein; COGs: COG1501 Alpha-glucosidase family 31 of glycosyl hydrolase; SPTR: Q9F234 Alpha-glucosidase 2; PFAM: Glycosyl hydrolases family 31
YP_003507862.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A3ITB6 Permease protein of sugar ABC transporter; InterPro IPR000515; COGs: COG0395 ABC-type sugar transport system permease component; KEGG: rce:RC1_3731 maltose transport system permease protein MalG, putative; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003507863.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Q9HH33 Trehalose/maltose transport inner membrane protein; InterPro IPR000515; COGs: COG1175 ABC-type sugar transport systems permease components; KEGG: oan:Oant_2941 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003507864.1	PFAM: extracellular solute-binding protein family 1; SPTR: Q9RUE8 Probable ABC transporter-binding protein DR_1438; InterPro IPR006059; COGs: COG1653 ABC-type sugar transport system periplasmic component; KEGG: hch:HCH_00201 ABC-type sugar transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding protein
YP_003507865.1	TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PRIAM: Ribonucleoside-diphosphate reductase; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase large subunit domain protein; InterPro IPR000788:IPR013509:IPR013344; KEGG: gbm:Gbem_1201 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; COGs: COG0209 Ribonucleotide reductase alpha subunit; SPTR: A6NX38 Ribonucleoside-diphosphate reductase; PFAM: Ribonucleotide reductase, all-alpha domain; Ribonucleotide reductase, barrel domain; TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
YP_003507866.1	PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; InterPro IPR006047:IPR006589:IPR001568; KEGG: bha:BH2927 maltogenic amylase; COGs: COG0366 Glycosidase; SPTR: A0YI72 Alpha amylase, catalytic region; PFAM: Alpha amylase, catalytic domain
YP_003507867.1	TIGRFAM: guanylate kinase; PRIAM: Guanylate kinase; PFAM: guanylate kinase; InterPro IPR008144:IPR008145:IPR017665; SPTR: Q5SI18 Guanylate kinase; KEGG: bsu:BSU15680 guanylate kinase; COGs: COG0194 Guanylate kinase; SMART: guanylate kinase/L-type calcium channel region; PFAM: Guanylate kinase; TIGRFAM: guanylate kinase
YP_003507868.1	TIGRFAM: DNA-directed RNA polymerase, omega subunit; InterPro IPR003716; SPTR: Q9EVV4 DNA-directed RNA polymerase subunit omega; PFAM: RNA polymerase Rpb6; TIGRFAM: DNA-directed RNA polymerase, omega subunit
YP_003507869.1	TIGRFAM: arginine repressor; PFAM: arginine repressor; InterPro IPR001669; KEGG: bha:BH2777 arginine repressor; COGs: COG1438 Arginine repressor; SPTR: Q5SI21 Arginine repressor; PFAM: Arginine repressor, C-terminal domain; Arginine repressor, DNA binding domain; TIGRFAM: arginine repressor
YP_003507870.1	TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; InterPro IPR003395:IPR004604; KEGG: bha:BH2776 DNA repair and genetic recombination; COGs: COG0497 ATPase involved in DNA repair; SPTR: Q9WXF2 DNA repair protein recN; PFAM: RecF/RecN/SMC N terminal domain; TIGRFAM: DNA repair protein RecN
YP_003507871.1	PFAM: multiple antibiotic resistance (MarC)-related protein; SPTR: A3XBD6 Membrane protein, MarC family protein; InterPro IPR002771; COGs: COG2095 Multiple antibiotic transporter; KEGG: rde:RD1_3115 MarC family integral membrane protein, putative; PFAM: MarC family integral membrane protein; TIGRFAM: conserved hypothetical protein TIGR00427
YP_003507872.1	SPTR: A9U7W1 Predicted protein (Fragment); KEGG: hypothetical protein; PFAM: elongation factor G domain IV; protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; InterProIPR000640:IPR004161:IPR000795:IPR005517:IPR 005225; TIGRFAM: small GTP-binding protein; COGs: COG0480 Translation elongation factors (GTPase); PFAM: Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; Elongation factor G C-terminus; Elongation factor Tu domain 2; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain
YP_003507874.1	KEGG: azo:azo2864 hypothetical protein; SPTR: A3Z2J8 Putative uncharacterized protein
YP_003507875.1	PFAM: thioesterase superfamily protein; SPTR: A6CRN8 ComA operon protein 2; InterPro IPR006683:IPR003736; COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; KEGG: bcy:Bcer98_3526 thioesterase superfamily protein; PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1
YP_003507876.1	TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PRIAM: 3-deoxy-7-phosphoheptulonate synthase; PFAM: DAHP synthetase I/KDSA; InterPro IPR006218:IPR006268; KEGG: phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54); K03856 3-deoxy-7-phosphoheptulonate synthase; COGs: COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; SPTR: A3ZPV4 Phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I family; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase
YP_003507877.1	PFAM: Prephenate dehydrogenase; amino acid-binding ACT domain protein; SPTR: A7VCF3 Putative uncharacterized protein; InterPro IPR003099:IPR002912; COGs: COG0287 Prephenate dehydrogenase; KEGG: bha:BH1666 prephenate dehydrogenase; PFAM: ACT domain; Prephenate dehydrogenase
YP_003507878.1	PFAM: metallophosphoesterase; SPTR: Q9RRY7 Uncharacterized metallophosphoesterase DR_2345; InterPro IPR004843; COGs: COG1408 phosphohydrolase; KEGG: gme:Gmet_2651 metallophosphoesterase; PFAM: Calcineurin-like phosphoesterase
YP_003507879.1	TIGRFAM: preprotein translocase, SecA subunit; PFAM: SecA DEAD domain protein; SecA Wing and Scaffold; SecA preprotein cross-linking region; InterProIPR000185:IPR011130:IPR011116:IPR011115:IPR 000595:IPR014021:IPR014018; KEGG: mno:Mnod_0708 preprotein translocase, SecA subunit; COGs: COG0653 Preprotein translocase subunit SecA (ATPase RNA helicase); SPTR: Q5SIW3 Protein translocase subunit secA; PFAM: SecA Wing and Scaffold domain; SecA DEAD-like domain; TIGRFAM: preprotein translocase, SecA subunit
YP_003507880.1	KEGG: ade:Adeh_2129 hypothetical protein
YP_003507881.1	TIGRFAM: metalloendopeptidase, glycoprotease family; PRIAM: O-sialoglycoprotein endopeptidase; PFAM: peptidase M22 glycoprotease; InterPro IPR017861:IPR000905:IPR017860; KEGG: rpi:Rpic_2424 metalloendopeptidase, glycoprotease family; COGs: COG0533 Metal-dependent protease with possible chaperone activity; SPTR: Q5SIW2 Probable O-sialoglycoprotein endopeptidase; PFAM: Glycoprotease family; TIGRFAM: metalloendopeptidase, putative, glycoprotease family
YP_003507882.1	PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; InterPro IPR011703:IPR011704:IPR003593; KEGG: scl:sce7373 methanol dehydrogenase regulator (MoxR)-like protein; COGs: COG0714 MoxR-like ATPase; SPTR: Q18EQ2 MoxR-like ATPase (Methanol dehydrogenase regulatory protein); PFAM: ATPase family associated with various cellular activities (AAA)
YP_003507883.1	PFAM: Acetamidase/Formamidase; SPTR: A6FP84 Acetamidase/Formamidase; InterPro IPR004304; COGs: COG2421 acetamidase/formamidase; KEGG: acetamidase/formamidase protein; PFAM: Acetamidase/Formamidase family
YP_003507884.1	PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; SPTR: Q9Y9S2 Aldehyde dehydrogenase, large subunit; InterPro IPR008274:IPR000674; COGs: COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL/CutL homologs; KEGG: sus:Acid_2226 xanthine dehydrogenase, molybdenum binding subunit apoprotein; PFAM: Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding domain; Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; TIGRFAM: carbon-monoxide dehydrogenase, large subunit
YP_003507885.1	PFAM: NADH:flavin oxidoreductase/NADH oxidase; monooxygenase FAD-binding; SPTR: A3RSV0 Protein with COG1902, NADH: flavin oxidoreductase and COG0654, 2-polyprenyl-6-methoxyphenol hydroxylase & related FAD-dependent oxidoreducatse domains; InterPro IPR003042:IPR002938:IPR001155:IPR016130; COGs: COG1902 NADH:flavin oxidoreductase Old Yellow Enzyme family; KEGG: pol:Bpro_0593 salicylyl-CoA 5-hydroxylase; PFAM: FAD binding domain; NADH:flavin oxidoreductase / NADH oxidase family
YP_003507886.1	SPTR: A3RSU9 Short chain dehydrogenase; KEGG: eba:ebA738 putative alcohol dehydrogenase related to anaerobic 3-hydroxybenzoate metabolism; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; InterProIPR002347:IPR002424:IPR002198:IPR013968:IPR 001509; COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; PFAM: short chain dehydrogenase
YP_003507887.1	PFAM: regulatory protein MarR; transcriptional regulator PadR family protein; SMART: regulatory protein MarR; InterPro IPR000835:IPR005149; KEGG: rme:Rmet_3146 transcriptional regulator, MarR family; COGs: COG1846 Transcriptional regulators; SPTR: A7C8U9 Transcriptional regulator, MarR family; PFAM: MarR family
YP_003507888.1	PFAM: Enoyl-CoA hydratase/isomerase; SPTR: A7C8U8 Enoyl-CoA hydratase/isomerase; InterPro IPR001753; COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; KEGG: rso:RS02010 enoyl-CoA hydratase; PFAM: Enoyl-CoA hydratase/isomerase family
YP_003507889.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; SPTR: A7C8U7 Acyl-CoA dehydrogenase domain protein; InterProIPR006090:IPR006092:IPR006091:IPR013107:IPR 006089; COGs: COG1960 Acyl-CoA dehydrogenase; KEGG: rpi:Rpic_3835 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, C-terminal domain
YP_003507890.1	PFAM: AMP-dependent synthetase and ligase; SPTR: A3RSU5 Benzoate-coenzyme A ligase; InterPro IPR000873; COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; KEGG: rso:RS02012 acetyl-coenzyme A synthetase; PFAM: AMP-binding enzyme; TIGRFAM: benzoate-CoA ligase family
YP_003507891.1	PFAM: Endoribonuclease L-PSP; SPTR: A3RSU3 Translation initiation inhibitor; InterPro IPR006175; COGs: COG0251 Putative translation initiation inhibitor yjgF family; KEGG: aav:Aave_3169 endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP
YP_003507892.1	TIGRFAM: kynureninase; PFAM: aminotransferase class V; InterPro IPR000192:IPR010111; KEGG: rce:RC1_2772 kynureninase; COGs: COG3844 Kynureninase; SPTR: A4BV35 Kynureninase; PFAM: Aminotransferase class-V; TIGRFAM: kynureninase
YP_003507893.1	TIGRFAM: tryptophan 2,3-dioxygenase; PFAM: tryptophan 23-dioxygenase; InterPro IPR004981:IPR017485; KEGG: tryptophan 2,3-dioxygenase; COGs: COG3483 Tryptophan 2 3-dioxygenase (vermilion); SPTR: A4EYN8 Probable tryptophan 2,3-dioxygenase; PFAM: Tryptophan 2,3-dioxygenase; TIGRFAM: tryptophan 2,3-dioxygenase
YP_003507894.1	PFAM: Extracellular ligand-binding receptor; SPTR: A4U5N4 ABC transporter substrate binding protein; InterPro IPR001828; COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; KEGG: dar:Daro_4043 extracellular ligand-binding receptor; PFAM: Receptor family ligand binding region
YP_003507895.1	PFAM: inner-membrane translocator; SPTR: A4U5N3 Membrane spanning protein; InterPro IPR001851; COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; KEGG: aav:Aave_3173 inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component
YP_003507896.1	PFAM: inner-membrane translocator; SPTR: A4U5N2 ABC transporter permease protein; InterPro IPR001851; COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; KEGG: vei:Veis_1990 inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component
YP_003507897.1	PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593; KEGG: pol:Bpro_5130 ABC transporter related; COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; SPTR: A4U5N1 ABC transporter ATP-binding protein; PFAM: ABC transporter
YP_003507898.1	SMART: AAA ATPase; SPTR: A3SJA5 ABC transporter ATP-binding protein; PFAM: ABC transporter related; COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003439:IPR003593:IPR017871; KEGG: aav:Aave_3170 ABC transporter-related protein; PFAM: ABC transporter
YP_003507899.1	PRIAM: Arylformamidase; COGs: COG0657 Esterase/lipase; KEGG: reu:Reut_A2702 hypothetical protein; SPTR: A6GTB7 Putative uncharacterized protein
YP_003507900.1	TIGRFAM: DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein; InterProIPR011708:IPR004013:IPR004365:IPR003141:IPR 004805; KEGG: sfu:Sfum_1225 DNA polymerase III, alpha subunit; COGs: COG0587 DNA polymerase III alpha subunit; SPTR: Q9XDH5 DNA polymerase III subunit alpha; PFAM: PHP domain; Bacterial DNA polymerase III alpha subunit; OB-fold nucleic acid binding domain; TIGRFAM: DNA-directed DNA polymerase III (polc)
YP_003507901.1	TIGRFAM: asparaginyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; InterProIPR002312:IPR004364:IPR004365:IPR006195:IPR 004522; KEGG: ank:AnaeK_2820 asparaginyl-tRNA synthetase; COGs: COG0017 Aspartyl/asparaginyl-tRNA synthetase; SPTR: P54263 Asparaginyl-tRNA synthetase; PFAM: OB-fold nucleic acid binding domain; tRNA synthetases class II (D, K and N); TIGRFAM: asparaginyl-tRNA synthetase
YP_003507902.1	PRIAM: 2-phosphosulfolactate phosphatase; PFAM: 2-phosphosulfolactate phosphatase; InterPro IPR005238; KEGG: cbs:COXBURSA331_A1552 2-phosphosulfolactate phosphatase; COGs: COG2045 Phosphosulfolactate phosphohydrolase; SPTR: Q5SID6 Probable 2-phosphosulfolactate phosphatase; PFAM: 2-phosphosulpholactate phosphatase; TIGRFAM: 2-phosphosulfolactate phosphatase
YP_003507903.1	PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; SPTR: A4KME3 Hypothetical transcriptional regulatory protein (Probably crp/fnr-family); KEGG: dal:Dalk_2705 transcriptional regulator, Crp/Fnr family; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR002373:IPR001808:IPR000595:IPR012318; PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain
YP_003507904.1	PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593:IPR017871; KEGG: bci:BCI_0425 lipoprotein releasing system, ATP-binding protein; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; SPTR: A6DU85 ABC transporter, ATP-binding protein; PFAM: ABC transporter
YP_003507905.1	TIGRFAM: protoporphyrinogen oxidase; PFAM: FAD dependent oxidoreductase; amine oxidase; InterPro IPR002937:IPR006076:IPR004572; KEGG: gsu:GSU0012 protoporphyrinogen oxidase; COGs: COG1232 Protoporphyrinogen oxidase; SPTR: A4A127 Protoporphyrinogen IX and coproporphyrinogen III oxidase; PFAM: Flavin containing amine oxidoreductase; TIGRFAM: protoporphyrinogen oxidase
YP_003507906.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; InterPro IPR000297; KEGG: eba:ebA6504 PpiC-type peptidyl-prolyl cis-trans isomerase; SPTR: A6GP57 PpiC-type peptidyl-prolyl cis-trans isomerase; PFAM: PPIC-type PPIASE domain
YP_003507907.1	TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PRIAM: N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase; PFAM: glycosyl transferase WecB/TagA/CpsF; InterPro IPR004629; KEGG: bcr:BCAH187_A5600 glycosyl transferase, WecB/TagA/CpsF family; COGs: COG1922 Teichoic acid biosynthesis protein; SPTR: A1HTS1 Glycosyl transferase, WecB/TagA/CpsF family; PFAM: Glycosyl transferase WecB/TagA/CpsF family; TIGRFAM: bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family
YP_003507908.1	SPTR: Q1IYS0 Probable 2-phosphosulfolactate phosphatase; COGs: COG2045 Phosphosulfolactate phosphohydrolase; KEGG: rpi:Rpic_1101 putative lipoprotein
YP_003507909.1	COGs: COG1386 transcriptional regulator protein containing the HTH domain; InterPro IPR005234:IPR002345; KEGG: ank:AnaeK_2173 segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; SPTR: Q2RIR6 Segregation and condensation protein B; TIGRFAM: segregation and condensation protein B; PFAM: Putative transcriptional regulators (Ypuh-like); TIGRFAM: segregation and condensation protein B
YP_003507910.1	PFAM: type II secretion system protein; SPTR: A0ZJH1 Pilin biogenesis protein; InterPro IPR003004:IPR001992; COGs: COG1459 Type II secretory pathway component PulF; KEGG: gsu:GSU1493 type IV pilus biogenesis protein PilC; PFAM: Bacterial type II secretion system protein F domain
YP_003507911.1	PFAM: protein of unknown function DUF55; SPTR: A0YIC7 Putative uncharacterized protein; InterPro IPR002740; COGs: COG2947 conserved hypothetical protein; KEGG: mmw:Mmwyl1_2907 hypothetical protein; PFAM: Protein of unknown function DUF55
YP_003507913.1	PFAM: FAD linked oxidase domain protein; SPTR: A3YPG5 Glycolate oxidase, subunit GlcD; InterPro IPR004113:IPR006094; COGs: COG0277 FAD/FMN-containing dehydrogenase; KEGG: ppd:Ppro_3253 FAD linked oxidase domain-containing protein; PFAM: FAD binding domain; FAD linked oxidases, C-terminal domain; TIGRFAM: glycolate oxidase, subunit GlcD
YP_003507914.1	InterPro IPR002345; SPTR: A6GFW8 Putative uncharacterized protein
YP_003507915.1	TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; InterPro IPR013120:IPR002225:IPR001509:IPR005886; KEGG: tgr:Tgr7_2340 UDP-glucose 4-epimerase; COGs: COG1087 UDP-glucose 4-epimerase; SPTR: Q59083 UDP-glucose 4-epimerase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: UDP-glucose-4-epimerase
YP_003507916.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; SPTR: A6EW68 L-carnitine dehydratase/bile acid-inducible protein F; InterPro IPR003673; COGs: COG1804 acyl-CoA transferase/carnitine dehydratase; KEGG: azo:azo1923 hypothetical protein; PFAM: CoA-transferase family III
YP_003507917.1	PFAM: peptidase S45 penicillin amidase; SPTR: A4U1F5 Peptidase S45, penicillin amidase; InterPro IPR002692; COGs: COG2366 Protein related to penicillin acylase; KEGG: reu:Reut_A1841 penicillin amidase; PFAM: Penicillin amidase
YP_003507919.1	KEGG: scl:sce0673 pectinacetylesterase, putative; SPTR: O29442 VtpJ-therm, putative
YP_003507921.1	PFAM: protein of unknown function DUF214; SPTR: Q8UKE4 Macrolide export ATP-binding/permease protein macB; InterPro IPR003838; COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; KEGG: rsq:Rsph17025_3866 TRAP-type C4-dicarboxylate transport system periplasmic component-like protein; PFAM: Predicted permease
YP_003507922.1	PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593:IPR017871; KEGG: mxa:MXAN_4199 putative macrolide efflux ABC transporter, ATP-binding protein; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; SPTR: A4CRP8 ATPase; PFAM: ABC transporter
YP_003507923.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; InterPro IPR006143; KEGG: sml:Smlt0363 putative HlyD secretion family protein; COGs: COG1566 Multidrug resistance efflux pump; SPTR: A4CE48 Putative substate-binding protein involved in drug resistance; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit
YP_003507924.1	KEGG: hypothetical protein; PFAM: Uncharacterized protein conserved in archaea (DUF2143)
YP_003507927.1	PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593; KEGG: bcr:BCAH187_A1515 ABC transporter, ATP-binding protein; COGs: COG1131 ABC-type multidrug transport system ATPase component; SPTR: A2U702 ABC transporter related; PFAM: ABC transporter
YP_003507928.1	KEGG: bsu:BSU09060 hypothetical protein; COGs: COG1725 transcriptional regulator protein; SPTR: P54590 Uncharacterized HTH-type transcriptional regulator yhcF; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; InterPro IPR000524; PFAM: Bacterial regulatory proteins, gntR family
YP_003507929.1	PFAM: peptidase S45 penicillin amidase; SPTR: A4U1F5 Peptidase S45, penicillin amidase; InterPro IPR002692; COGs: COG2366 Protein related to penicillin acylase; KEGG: rme:Rmet_1578 peptidase S45, penicillin amidase; PFAM: Penicillin amidase
YP_003507930.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; InterPro IPR004360; KEGG: mch:Mchl_4428 glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: A3TTW8 Putative uncharacterized protein; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
YP_003507931.1	SMART: zinc finger CDGSH-type domain protein; InterPro IPR006622; KEGG: mlo:mlr4660 hypothetical protein; SPTR: A7CHQ9 Zinc finger, CDGSH-type domain protein; PFAM: Iron-binding zinc finger CDGSH type
YP_003507932.1	PFAM: aldo/keto reductase; SPTR: O49847 Potassium channel beta subunit (Fragment); InterPro IPR001395:IPR005399; COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); KEGG: bba:Bd3502 potassium voltage-gated channel beta subunit; PFAM: Aldo/keto reductase family; TIGRFAM: voltage-dependent potassium channel beta subunit, animal
YP_003507933.1	PFAM: Glycosyltransferase 28 domain; SPTR: Q9FZL3 Probable monogalactosyldiacylglycerol synthase, chloroplastic; InterPro IPR007235; COGs: COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; KEGG: MGDG synthase; PFAM: Glycosyltransferase family 28 C-terminal domain
YP_003507935.1	KEGG: scl:sce3217 serine/threonine-protein kinase
YP_003507936.1	PFAM: FAD linked oxidase domain protein; SPTR: A6ZII6 FAD/FMN-containing dehydrogenase; InterPro IPR004113:IPR006094; COGs: COG0277 FAD/FMN-containing dehydrogenase; KEGG: cti:RALTA_A2566 D-lactate dehydrogenase (cytochrome) oxidoreductase protein; PFAM: FAD linked oxidases, C-terminal domain; FAD binding domain; TIGRFAM: glycolate oxidase, subunit GlcD
YP_003507938.1	PFAM: YceI family protein; InterPro IPR007372; KEGG: sus:Acid_1354 YceI family protein; PFAM: YceI-like domain
YP_003507939.1	PFAM: short-chain dehydrogenase/reductase SDR; SPTR: A0YK39 Short-chain dehydrogenase/reductase SDR; InterPro IPR002347:IPR002198; COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; KEGG: sil:SPO1480 short chain dehydrogenase/reductase family oxidoreductase; PFAM: short chain dehydrogenase
YP_003507940.1	KEGG: scl:sce3706 hypothetical protein; PFAM: Putative addiction module component
YP_003507942.1	TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; GAF domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; GAF domain protein; PAS domain containing protein; InterProIPR013655:IPR001633:IPR000160:IPR003018:IPR 013656:IPR013767:IPR000014; KEGG: gme:Gmet_0987 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); COGs: COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain; SPTR: A0YWD3 Putative uncharacterized protein; PFAM: GAF domain; PAS fold; EAL domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain; PAS domain S-box
YP_003507943.1	PFAM: deoxyribodipyrimidine photolyase-related protein; DNA photolyase FAD-binding; SPTR: Q3IP83 Putative uncharacterized protein; InterPro IPR007357:IPR005101:IPR005479; COGs: COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase; KEGG: deoxyribodipyrimidine photolyase-related protein ; K06876; PFAM: FAD binding domain of DNA photolyase; Deoxyribodipyrimidine photolyase-related protein
YP_003507944.1	KEGG: cvi:CV_0167 lysophospholipase L2; PFAM: alpha/beta hydrolase fold
YP_003507945.1	KEGG: bha:BH1282 hypothetical protein; SPTR: A6CH96 Putative uncharacterized protein
YP_003507946.1	PFAM: beta-Ig-H3/fasciclin; SMART: beta-Ig-H3/fasciclin; InterPro IPR000782; KEGG: pin:Ping_2325 beta-Ig-H3/fasciclin; COGs: COG2335 Secreted and surface protein containing fasciclin-like repeats; SPTR: A4A3H5 Fasciclin domain containing secreted protein; PFAM: Fasciclin domain
YP_003507948.1	KEGG: mxa:MXAN_3803 ATP-binding protein, Mrp/Nbp35 family; COGs: COG0489 ATPase involved in chromosome partitioning; SPTR: Q9RVM9 Protein mrp homolog; PFAM: protein of unknown function DUF59; InterPro IPR002744:IPR000808; PFAM: Domain of unknown function DUF59; ParA/MinD ATPase like
YP_003507949.1	PFAM: regulatory protein ArsR; transcriptional regulator TrmB; SMART: regulatory protein ArsR; InterPro IPR002831:IPR001845; KEGG: transcriptional regulator; COGs: COG2345 transcriptional regulator protein; SPTR: A4BBX5 Putative uncharacterized protein; PFAM: Bacterial regulatory protein, arsR family
YP_003507950.1	PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; SMART: EAL domain protein; GGDEF domain containing protein; InterPro IPR001633:IPR000160:IPR013656:IPR000014; KEGG: mch:Mchl_4176 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); COGs: COG2200 FOG: EAL domain; SPTR: A3LI29 Putative uncharacterized protein; PFAM: GGDEF domain; EAL domain; TIGRFAM: PAS domain S-box
YP_003507951.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; SMART: GGDEF domain containing protein; GAF domain protein; InterPro IPR000160:IPR003018; KEGG: gme:Gmet_1298 diguanylate cyclase with GAF sensor; COGs: COG2199 FOG: GGDEF domain; SPTR: A3JIZ2 Putative uncharacterized protein; PFAM: GAF domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_003507953.1	PFAM: UvrD/REP helicase; SPTR: P56255 ATP-dependent DNA helicase pcrA; InterPro IPR000212:IPR014016:IPR014017; COGs: COG0210 Superfamily I DNA and RNA helicase; KEGG: ade:Adeh_0097 ATP-dependent DNA helicase Rep; PFAM: UvrD/REP helicase
YP_003507955.1	PFAM: SMC domain protein; SPTR: A1HT45 Putative uncharacterized protein; InterPro IPR003395; COGs: COG4637 ATPase; KEGG: bpe:BP3115 hypothetical protein; PFAM: RecF/RecN/SMC N terminal domain
YP_003507956.1	PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; protein of unknown function RIO1; aminoglycoside phosphotransferase; Pyrrolo-quinoline quinone; SMART: serine/threonine protein kinase; tyrosine protein kinase; Pyrrolo-quinoline quinone; InterProIPR000687:IPR001245:IPR002575:IPR002372:IPR 017442:IPR002290:IPR017441:IPR008266:IPR000719; KEGG: afw:Anae109_2094 protein kinase; COGs: COG0515 Serine/threonine protein kinase; SPTR: Q9XA16 Probable serine/threonine-protein kinase SCO3848; PFAM: PQQ enzyme repeat; Protein kinase domain
YP_003507957.1	TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; InterPro IPR005793:IPR002376:IPR005794; KEGG: sus:Acid_2747 methionyl-tRNA formyltransferase; COGs: COG0223 Methionyl-tRNA formyltransferase; SPTR: Q5SLH3 Methionyl-tRNA formyltransferase; PFAM: Formyl transferase, C-terminal domain; Formyl transferase; TIGRFAM: methionyl-tRNA formyltransferase
YP_003507958.1	TIGRFAM: peptide deformylase; PRIAM: Peptide deformylase; PFAM: formylmethionine deformylase; InterPro IPR000181; KEGG: sun:SUN_0013 peptide deformylase; COGs: COG0242 N-formylmethionyl-tRNA deformylase; SPTR: P43522 Peptide deformylase; PFAM: Polypeptide deformylase; TIGRFAM: peptide deformylase
YP_003507959.1	PFAM: protein of unknown function DUF6 transmembrane; InterPro IPR000620; KEGG: bce:BC2681 drug/metabolite exporter family protein; SPTR: A8CS74 Putative uncharacterized protein; PFAM: Integral membrane protein DUF6
YP_003507960.1	SPTR: A6DUH6 Putative uncharacterized protein; KEGG: dol:Dole_1128 hypothetical protein
YP_003507962.1	PFAM: SCP-like extracellular; SPTR: A3IG64 Putative uncharacterized protein; InterPro IPR014044; COGs: COG2340 Uncharacterized protein with SCP/PR1 domains; KEGG: bsu:BSU13970 hypothetical protein; PFAM: SCP-like extracellular protein
YP_003507963.1	PFAM: peptidase M16 domain protein; SPTR: A3ZXI4 Hypothetical zinc protease; InterPro IPR011765:IPR007863:IPR001431; COGs: COG0612 Zn-dependent peptidase; KEGG: dal:Dalk_4744 peptidase M16 domain protein; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16)
YP_003507964.1	PRIAM: processing peptidase; PFAM: peptidase M16 domain protein; InterPro IPR011765:IPR007863; KEGG: pla:Plav_0678 peptidase M16 domain-containing protein; COGs: COG0612 Zn-dependent peptidase; SPTR: A3ZXI5 Hypothetical zinc protease; PFAM: Insulinase (Peptidase family M16); Peptidase M16 inactive domain
YP_003507965.1	TIGRFAM: ATP-dependent DNA helicase RecG; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: DEAD-like helicase ; helicase domain protein; InterProIPR001650:IPR011545:IPR004365:IPR014001:IPR 014021:IPR004609; KEGG: gme:Gmet_1777 ATP-dependent DNA helicase RecG; COGs: COG1200 RecG-like helicase; SPTR: A3Z775 Putative DNA helicase; PFAM: OB-fold nucleic acid binding domain; Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecG
YP_003507967.1	PFAM: beta-lactamase; SPTR: Q6L347 Beta lactamase; InterPro IPR001466; COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; KEGG: zmo:ZMO0893 esterase; PFAM: Beta-lactamase
YP_003507968.1	PFAM: protein of unknown function UPF0075; SPTR: Q1J3J2 Anhydro-N-acetylmuramic acid kinase; InterPro IPR005338; COGs: COG2377 molecular chaperone distantly related to HSP70-fold metalloprotease; KEGG: sus:Acid_4759 anhydro-N-acetylmuramic acid kinase; PFAM: Uncharacterised protein family (UPF0075)
YP_003507969.1	PFAM: purine or other phosphorylase family 1; SPTR: A0XY40 Uridine phosphorylase; InterPro IPR000845; COGs: COG2820 Uridine phosphorylase; KEGG: pca:Pcar_2537 uridine phosphorylase; PFAM: Phosphorylase superfamily; TIGRFAM: uridine phosphorylase
YP_003507970.1	PFAM: Peptidase M23; SPTR: A3U2S5 Peptidase, M23/M37 family protein; InterPro IPR016047; COGs: COG0739 Membrane protein related to metalloendopeptidase; KEGG: dsh:Dshi_1176 peptidase M23B; PFAM: Peptidase family M23
YP_003507971.1	PFAM: protein of unknown function DUF583; SPTR: A6G268 Putative uncharacterized protein; InterPro IPR007607; COGs: COG1664 Integral membrane protein CcmA involved in cell shape determination; KEGG: scl:sce0449 hypothetical protein; PFAM: Protein of unknown function, DUF583
YP_003507972.1	PFAM: Peptidase M23; SPTR: A1HSM7 Peptidase M23B; InterPro IPR016047; COGs: COG0739 Membrane protein related to metalloendopeptidase; KEGG: eli:ELI_13220 peptidase M23/M37; PFAM: Peptidase family M23
YP_003507973.1	TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; SPTR: A6DCX7 Acetyl-CoA carboxylase subunit beta; InterPro IPR000438:IPR011762; COGs: COG0777 Acetyl-CoA carboxylase beta subunit; KEGG: nis:NIS_1198 acetyl-CoA carboxylase subunit beta; PFAM: Carboxyl transferase domain; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit
YP_003507974.1	TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PRIAM: Acetyl-CoA carboxylase; PFAM: acetyl-CoA carboxylase alpha subunit; InterPro IPR001095:IPR011763; KEGG: ppd:Ppro_2069 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; COGs: COG0825 Acetyl-CoA carboxylase alpha subunit; SPTR: Q5SHG3 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; PFAM: Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit
YP_003507975.1	KEGG: oca:OCAR_7464 phosphonate ABC transporter, permease protein PhnE; COGs: COG3639 ABC-type phosphate/phosphonate transport system permease component; SPTR: A3JHA0 Phosphonate transport protein PhnE; TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; InterPro IPR000515:IPR005769; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphonate ABC transporter, permease protein PhnE
YP_003507976.1	TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593:IPR017871:IPR012693; KEGG: bja:bll7947 phosphonates transport system nucleotide binding/ATPase protein; COGs: COG3638 ABC-type phosphate/phosphonate transport system ATPase component; SPTR: Q4L9P7 Phosphonates import ATP-binding protein phnC; PFAM: ABC transporter; TIGRFAM: phosphonate ABC transporter, ATP-binding protein
YP_003507977.1	TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; SPTR: A6CM36 Alkylphosphonate ABC tranporter phosphate-binding protein; InterPro IPR005770; COGs: COG3221 ABC-type phosphate/phosphonate transport system periplasmic component; KEGG: bba:Bd0859 alkylphosphonate ABC transporter; PFAM: NMT1/THI5 like; TIGRFAM: phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein
YP_003507978.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; InterPro IPR005834:IPR006402:IPR006439; KEGG: bsu:BSU09240 hypothetical protein; COGs: COG0637 phosphatase/phosphohexomutase; SPTR: P54607 Uncharacterized protein yhcW; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
YP_003507979.1	PRIAM: N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; InterPro IPR002508; KEGG: ade:Adeh_3362 N-acetylmuramoyl-L-alanine amidase; COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; SPTR: A3ZH92 N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase
YP_003507982.1	PFAM: permease YjgP/YjgQ family protein; SPTR: A1HRI6 Permease YjgP/YjgQ family protein; InterPro IPR005495; COGs: COG0795 permease; KEGG: glo:Glov_2589 permease YjgP/YjgQ family protein; PFAM: Predicted permease YjgP/YjgQ family
YP_003507983.1	PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; SPTR: P15263 Pleiotropic regulatory protein; InterPro IPR000653:IPR000192:IPR001597; COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; KEGG: aeh:Mlg_0663 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family
YP_003507984.1	PRIAM: Oligopeptidase A; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; InterPro IPR001567; KEGG: sus:Acid_5816 oligopeptidase A; COGs: COG0339 Zn-dependent oligopeptidase; SPTR: A6G7H6 Oligopeptidase A; PFAM: Peptidase family M3
YP_003507986.1	TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; InterPro IPR010095:IPR001959; KEGG: noc:Noc_0388 IS891/IS1136/IS1341 transposase; COGs: COG0675 Transposase and inactivated derivatives; SPTR: Q8PRS0 Transposase; PFAM: Putative transposase DNA-binding domain; Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region
YP_003507987.1	SPTR: A0YWZ8 Transposase-related protein (Fragment); COGs: COG1943 Transposase and inactivated derivatives; KEGG: noc:Noc_0387 transposase IS200; PFAM: Transposase IS200 like
YP_003507988.1	TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; InterPro IPR001482:IPR003593:IPR006321; KEGG: afw:Anae109_0668 twitching motility protein; COGs: COG2805 Tfp pilus assembly protein pilus retraction ATPase PilT; SPTR: A1HQ23 Twitching motility protein; PFAM: Type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT
YP_003507990.1	KEGG: gdi:GDI2935 hypothetical protein; SPTR: A1HR76 4-diphosphocytidyl-2C-methyl-D-erythritol synthase
YP_003507993.1	PFAM: beta-lactamase domain protein; SPTR: Q72J62 UPF0173 metal-dependent hydrolase TT_C0917; InterPro IPR001279; COGs: COG2220 Zn-dependent hydrolase of the beta-lactamase fold; KEGG: bca:BCE_4747 metal-dependent hydrolase; PFAM: Metallo-beta-lactamase superfamily
YP_003507994.1	PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; InterProIPR001245:IPR017442:IPR002290:IPR017441:IPR 008271:IPR000719; KEGG: ade:Adeh_1074 serine/threonine protein kinase; COGs: COG0515 Serine/threonine protein kinase; SPTR: P65726 Probable serine/threonine-protein kinase pknA; PFAM: Protein kinase domain
YP_003507995.1	PFAM: AMP-dependent synthetase and ligase; SPTR: O29287 Acetyl-CoA synthetase (Acs-4); InterPro IPR000873; COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; KEGG: bha:BH1137 acetyl-CoA synthetase; PFAM: AMP-binding enzyme; TIGRFAM: acetoacetyl-CoA synthase
YP_003507996.1	TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; InterPro IPR001482:IPR003593:IPR006321; KEGG: glo:Glov_3160 twitching motility protein; COGs: COG2805 Tfp pilus assembly protein pilus retraction ATPase PilT; SPTR: A8DJW7 Twitching motility protein; PFAM: Type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT
YP_003507998.1	InterPro IPR004394; TIGRFAM: iojap-like protein; COGs: COG0799 Iojap protein; SPTR: A6F3V7 Uncharacterized plant Iojap protein (Fragment); KEGG: ank:AnaeK_0226 iojap-like protein; PFAM: Iojap-related protein; PFAM: Domain of unknown function DUF143; TIGRFAM: iojap-related protein
YP_003507999.1	TIGRFAM: GTP-binding protein Obg/CgtA; small GTP-binding protein; PFAM: GTP1/OBG sub domain protein; GTP-binding protein HSR1-related; GTP1/OBG domain protein; InterProIPR006073:IPR002917:IPR015349:IPR006169:IPR 000834:IPR006074:IPR005225:IPR014100; KEGG: sfu:Sfum_3641 small GTP-binding protein; COGs: COG0536 GTPase; SPTR: A6NRC1 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF1967); GTPase of unknown function; GTP1/OBG; TIGRFAM: Obg family GTPase CgtA, C-terminal extension; Obg family GTPase CgtA; small GTP-binding protein domain
YP_003508000.1	TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; InterPro IPR001684; KEGG: pag:PLES_49501 50S ribosomal protein L27; COGs: COG0211 Ribosomal protein L27; SPTR: Q72HR3 50S ribosomal protein L27; PFAM: Ribosomal L27 protein; TIGRFAM: ribosomal protein L27
YP_003508001.1	TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21; InterPro IPR001787; KEGG: bha:BH3011 50S ribosomal protein L21; COGs: COG0261 Ribosomal protein L21; SPTR: P60492 50S ribosomal protein L21; PFAM: Ribosomal prokaryotic L21 protein; TIGRFAM: ribosomal protein L21
YP_003508002.1	PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; InterPro IPR006674:IPR003607:IPR005249; KEGG: bcy:Bcer98_3057 metal dependent phosphohydrolase; COGs: COG1713 HD superfamily hydrolase involved in NAD metabolism; SPTR: A5Z4G7 Putative uncharacterized protein; PFAM: HD domain; TIGRFAM: conserved hypothetical protein TIGR00488
YP_003508003.1	TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; InterPro IPR004474:IPR006162; KEGG: bsu:BSU35520 hypothetical protein; COGs: COG1316 Transcriptional regulator; SPTR: A3Z7Z7 Membrane bound transcriptional regulator-protein; PFAM: Cell envelope-related transcriptional attenuator domain; TIGRFAM: cell envelope-related function transcriptional attenuator common domain
YP_003508004.1	TIGRFAM: lysine biosynthesis protein LysW
YP_003508005.1	TIGRFAM: deoxyribose-phosphate aldolase; PRIAM: Deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; InterPro IPR002915:IPR011343; KEGG: bpy:Bphyt_5196 deoxyribose-phosphate aldolase; COGs: COG0274 Deoxyribose-phosphate aldolase; SPTR: A3TYE1 Deoxyribose-phosphate aldolase; PFAM: DeoC/LacD family aldolase; TIGRFAM: deoxyribose-phosphate aldolase
YP_003508006.1	PRIAM: Aldehyde dehydrogenase (NAD(+)); PFAM: Aldehyde Dehydrogenase; InterPro IPR015590:IPR016160; KEGG: bbt:BBta_7827 putative membrane-anchored aldehyde dehydrogenase protein; COGs: COG1012 NAD-dependent aldehyde dehydrogenase; SPTR: A3VEY1 Aldehyde dehydrogenase family protein; PFAM: Aldehyde dehydrogenase family
YP_003508007.1	PFAM: basic membrane lipoprotein; SPTR: A4BA17 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein (Fragment); InterPro IPR003760; COGs: COG1744 Uncharacterized ABC-type transport system periplasmic component/surface lipoprotein; KEGG: membrane lipoprotein; PFAM: Basic membrane protein
YP_003508008.1	TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; InterPro IPR014048; KEGG: cja:CJA_3721 methylated-DNA-[protein]-cysteine S-methyltransferase; COGs: COG0350 Methylated DNA-protein cysteine methyltransferase; SPTR: A8CSY0 Methylated-DNA--protein-cysteine methyltransferase; PFAM: 6-O-methylguanine DNA methyltransferase, DNA binding domain; TIGRFAM: O-6-methylguanine DNA methyltransferase
YP_003508009.1	PFAM: regulatory protein TetR; InterPro IPR001647; KEGG: cti:RALTA_B1267 putative transcriptional regulator, TetR family; SPTR: A6GBL8 Probable transcriptional regulator, TetR family protein; PFAM: Bacterial regulatory proteins, tetR family
YP_003508010.1	PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase; InterPro IPR001736; KEGG: pau:PA14_16200 hypothetical protein; COGs: COG1502 Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase; SPTR: A6G9J3 Putative uncharacterized protein; PFAM: Phospholipase D Active site motif
YP_003508011.1	TIGRFAM: maf protein; PFAM: Maf family protein; SPTR: Q72JE7 Maf-like protein TT_C0825; KEGG: sat:SYN_00572 putative inhibitor of septum formation protein; COGs: COG0424 Nucleotide-binding protein implicated in inhibition of septum formation; InterPro IPR003697; PFAM: Maf-like protein; TIGRFAM: MAF protein
YP_003508012.1	TIGRFAM: valyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ia; tRNA synthetase valyl/leucyl anticodon-binding; tRNA synthetase class I (M); InterProIPR002303:IPR015413:IPR013155:IPR002300:IPR 001412; KEGG: bha:BH3038 valyl-tRNA synthetase; COGs: COG0525 Valyl-tRNA synthetase; SPTR: Q9RY06 Valyl-tRNA synthetase; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; Valyl tRNA synthetase tRNA binding arm; TIGRFAM: valyl-tRNA synthetase; glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
YP_003508015.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; InterPro IPR000160; KEGG: rfr:Rfer_4028 diguanylate cyclase; COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; SPTR: A3WDR1 Putative uncharacterized protein; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_003508017.1	PRIAM: Deoxyribodipyrimidine photo-lyase; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; InterPro IPR002081:IPR006050:IPR005101; KEGG: cvi:CV_3481 deoxyribodipyrimidine photo-lyase; COGs: COG0415 Deoxyribodipyrimidine photolyase; SPTR: P61496 Deoxyribodipyrimidine photo-lyase; PFAM: FAD binding domain of DNA photolyase; DNA photolyase
YP_003508018.1	SPTR: A6CMC1 YtmA; COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; KEGG: ccs:CCNA_03839 acylamino-acid-releasing enzyme
YP_003508019.1	KEGG: vha:VIBHAR_00291 hypothetical protein; SPTR: A1HPJ5 Acyltransferase 3
YP_003508020.1	KEGG: acp:A2cp1_3959 membrane dipeptidase; COGs: COG2355 Zn-dependent dipeptidase microsomal dipeptidase homolog; SPTR: A4CJ12 Putative peptidase; PFAM: peptidase M19 renal dipeptidase; InterPro IPR008257; PFAM: Membrane dipeptidase (Peptidase family M19)
YP_003508021.1	PFAM: protein of unknown function DUF81; SPTR: A8J7K5 Predicted protein (Fragment); InterPro IPR002781; COGs: COG0730 permease; KEGG: sfu:Sfum_0761 protein of unknown function DUF81; PFAM: Domain of unknown function DUF81
YP_003508022.1	TIGRFAM: ATP-dependent protease La; PRIAM: Endopeptidase La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; InterProIPR001270:IPR001984:IPR003111:IPR008269:IPR 003959:IPR011704:IPR003593:IPR004815; SPTR: A1HP65 ATP-dependent protease La; KEGG: gur:Gura_0691 ATP-dependent protease La; COGs: COG0466 ATP-dependent Lon protease; SMART: peptidase S16 lon domain protein; AAA ATPase; PFAM: ATPase family associated with various cellular activities (AAA); Lon protease (S16) C-terminal proteolytic domain; ATP-dependent protease La (LON) domain; TIGRFAM: ATP-dependent protease La
YP_003508023.1	PFAM: protein of unknown function DUF1517; SPTR: A0YP23 Putative uncharacterized protein; InterPro IPR010903; COGs: COG4371 membrane protein; KEGG: hypothetical protein, conserved; PFAM: Protein of unknown function (DUF1517)
YP_003508024.1	TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PRIAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; PFAM: IspG family protein; InterPro IPR004588; KEGG: aba:Acid345_1423 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; COGs: COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis; SPTR: Q5SLI8 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; PFAM: GcpE protein; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
YP_003508025.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; SPTR: A6G1P6 Hypothetical bacterioferritin comigratory protein; InterPro IPR000866:IPR013740; COGs: COG1225 Peroxiredoxin; KEGG: azc:AZC_1350 AhpC/TSA family protein; PFAM: AhpC/TSA family
YP_003508027.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; InterPro IPR000866:IPR013740; KEGG: noc:Noc_0989 hypothetical protein; SPTR: A3ZKZ4 Putative uncharacterized protein; PFAM: AhpC/TSA family
YP_003508028.1	PRIAM: Mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type I; InterPro IPR001250; KEGG: bsu:BSU12020 mannose-6-phosphate isomerase; COGs: COG1482 Phosphomannose isomerase; SPTR: A2TUB3 Mannose-6-phosphate isomerase, class I; PFAM: Phosphomannose isomerase type I; TIGRFAM: mannose-6-phosphate isomerase, class I
YP_003508029.1	PFAM: metallophosphoesterase; InterPro IPR004843; KEGG: tgr:Tgr7_1718 metallophosphoesterase; SPTR: A8SGW4 Putative uncharacterized protein; PFAM: Calcineurin-like phosphoesterase
YP_003508030.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; SPTR: Q55CK8 Putative uncharacterized protein; InterPro IPR002347:IPR013968:IPR002198; COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; KEGG: hypothetical protein; PFAM: short chain dehydrogenase
YP_003508031.1	TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; InterPro IPR006674:IPR006675; KEGG: aba:Acid345_1412 metal dependent phosphohydrolase; COGs: COG2316 hydrolase (HD superfamily); SPTR: A1HQ46 Metal dependent phosphohydrolase; PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG
YP_003508032.1	SPTR: Q8TMJ4 Putative uncharacterized protein; COGs: COG4907 membrane protein; KEGG: hypothetical protein; PFAM: Predicted membrane protein (DUF2207)
YP_003508033.1	COGs: COG1704 conserved hypothetical protein; InterPro IPR007156; KEGG: mmr:Mmar10_1566 LemA family protein; SPTR: Q8TMJ3 LemA protein; PFAM: LemA family protein; PFAM: LemA family
YP_003508034.1	PFAM: protein of unknown function DUF433; SPTR: A8ABE3 Putative uncharacterized protein; InterPro IPR007367; COGs: COG2442 conserved hypothetical protein; KEGG: sus:Acid_6200 hypothetical protein; PFAM: Protein of unknown function (DUF433)
YP_003508035.1	COGs: COG4634 conserved hypothetical protein; KEGG: sus:Acid_6199 hypothetical protein
YP_003508036.1	PRIAM: Hydroxymethylglutaryl-CoA lyase; PFAM: pyruvate carboxyltransferase; InterPro IPR000891; KEGG: aba:Acid345_1427 hydroxymethylglutaryl-CoA lyase; COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; SPTR: A6EGU7 Hydroxymethylglutaryl-CoA lyase like protein; PFAM: HMGL-like
YP_003508037.1	PFAM: FUN14 family protein; SPTR: B7FVP0 Predicted protein; InterPro IPR007014; COGs: COG2383 conserved hypothetical protein; KEGG: hypothetical protein; PFAM: FUN14 family
YP_003508038.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; SPTR: A3I388 2, 4-dienoyl-CoA reductase (NADPH) related protein; InterPro IPR002347:IPR002198:IPR013968; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); KEGG: hypothetical protein; PFAM: short chain dehydrogenase
YP_003508039.1	TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; InterPro IPR002155; KEGG: aba:Acid345_2470 3-ketoacyl-CoA thiolase; COGs: COG0183 Acetyl-CoA acetyltransferase; SPTR: A3IDT7 Acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal domain; Thiolase, C-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases
YP_003508040.1	TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PRIAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase; InterPro IPR003526; KEGG: bid:Bind_1516 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; COGs: COG0245 2C-methyl-D-erythritol 2 4-cyclodiphosphate synthase; SPTR: Q72HP8 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: YgbB family; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
YP_003508041.1	PFAM: protein of unknown function UPF0126; SPTR: Q9RRW7 UPF0126 membrane protein DR_2368; InterPro IPR005115; COGs: COG2860 membrane protein; KEGG: protein of unknown function UPF0126; PFAM: UPF0126 domain
YP_003508042.1	TIGRFAM: magnesium transporter; PFAM: MgtE integral membrane region; CBS domain containing protein; MgtE intracellular region; SMART: CBS domain containing protein; InterPro IPR006668:IPR000644:IPR006667:IPR006669; KEGG: scl:sce8613 Mg2+ transporter; COGs: COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain); SPTR: Q5SMG8 Magnesium transporter mgtE; PFAM: CBS domain pair; MgtE intracellular N domain; Divalent cation transporter; TIGRFAM: Mg2+ transporter (mgtE)
YP_003508043.1	KEGG: acp:A2cp1_0518 hypothetical protein
YP_003508044.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A0ZH50 Permease protein of iron(III) ABC transporter; InterPro IPR000515; COGs: COG1178 ABC-type Fe3+ transport system permease component; KEGG: mxa:MXAN_0771 iron ABC transporter, permease protein; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003508045.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; InterPro IPR003439:IPR013611:IPR003593:IPR017871; KEGG: mxa:MXAN_0772 iron ABC transporter, ATP-binding protein; COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; SPTR: A0YXZ7 ABC transporter; PFAM: ABC transporter; TOBE domain
YP_003508046.1	PFAM: tRNA pseudouridine synthase; SPTR: Q5SHU9 tRNA pseudouridine synthase A; KEGG: bha:BH0167 tRNA pseudouridine synthase A (pseudouridylate synthase I); PRIAM: tRNA-pseudouridine synthase I; InterPro IPR001406; TIGRFAM: tRNA pseudouridine synthase A; COGs: COG0101 Pseudouridylate synthase; PFAM: tRNA pseudouridine synthase; TIGRFAM: pseudouridylate synthase I
YP_003508048.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A0YZC4 Permease protein of ABC transporter; InterPro IPR000515; COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; KEGG: gme:Gmet_1236 binding-protein dependent transport system inner membrane protein; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003508049.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A0YZC2 Permease protein of ABC transporter; InterPro IPR000515; COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; KEGG: bba:Bd2192 dipeptide transport system permease protein DppB; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003508050.1	PFAM: extracellular solute-binding protein family 5; SPTR: A4TY49 Extracellular solute-binding protein, family 5; InterPro IPR000914; COGs: COG0747 ABC-type dipeptide transport system periplasmic component; KEGG: mag:amb1979 ABC-type dipeptide transport system; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle
YP_003508051.1	TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; InterPro IPR000361:IPR017870:IPR016092; KEGG: aha:AHA_3517 iron-sulfur cluster insertion protein ErpA; COGs: COG0316 conserved hypothetical protein; SPTR: A4BVU4 HesB/YadR/YfhF; PFAM: Iron-sulphur cluster biosynthesis; TIGRFAM: Iron-sulfur cluster assembly accessory protein
YP_003508052.1	PFAM: peptidase M24; SPTR: A6C358 Putative uncharacterized protein; InterPro IPR000994; COGs: COG0006 Xaa-Pro aminopeptidase; KEGG: ade:Adeh_4235 peptidase M24; PFAM: metallopeptidase family M24
YP_003508053.1	TIGRFAM: ribose-phosphate pyrophosphokinase; PRIAM: Ribose-phosphate diphosphokinase; PFAM: phosphoribosyltransferase; InterPro IPR000836:IPR005946; KEGG: hch:HCH_00912 phosphoribosylpyrophosphate synthetase; COGs: COG0462 Phosphoribosylpyrophosphate synthetase; SPTR: Q9RUD2 Probable ribose-phosphate pyrophosphokinase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: ribose-phosphate pyrophosphokinase
YP_003508054.1	TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; InterPro IPR004474; KEGG: hypothetical protein; COGs: COG1316 Transcriptional regulator; SPTR: A3IQ92 Regulation of penicillin binding protein 5 production; PFAM: Cell envelope-related transcriptional attenuator domain; TIGRFAM: cell envelope-related function transcriptional attenuator common domain
YP_003508055.1	COGs: COG3294 conserved hypothetical protein; SPTR: A7I5G5 Metal dependent phosphohydrolase
YP_003508056.1	PFAM: Enoyl-CoA hydratase/isomerase; SPTR: A1HPI9 Enoyl-CoA hydratase/isomerase; InterPro IPR001753; COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; KEGG: sus:Acid_6224 short chain enoyl-CoA hydratase; PFAM: Enoyl-CoA hydratase/isomerase family
YP_003508057.1	TIGRFAM: DNA polymerase I; PRIAM: DNA-directed DNA polymerase; PFAM: 5'-3' exonuclease; DNA-directed DNA polymerase; Taq polymerase thermostable exonuclease region; InterProIPR006142:IPR002298:IPR002421:IPR001098:IPR 015361:IPR003587:IPR003586:IPR008918:IPR006141:IPR004042; SPTR: P19821 DNA polymerase I, thermostable; KEGG: maq:Maqu_0541 DNA polymerase I; COGs: COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains; SMART: 5'-3' exonuclease; DNA-directed DNA polymerase; Hedgehog/intein hint domain protein; Helix-hairpin-helix domain protein class 2; PFAM: Taq polymerase, exonuclease; DNA polymerase family A; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, C-terminal SAM fold; TIGRFAM: intein C-terminal splicing region; DNA polymerase I; intein N-terminal splicing region
YP_003508059.1	TIGRFAM: aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; InterProIPR002312:IPR004364:IPR004365:IPR006195:IPR 004523; KEGG: bat:BAS2031 aspartyl-tRNA synthetase; COGs: COG0017 Aspartyl/asparaginyl-tRNA synthetase; SPTR: A6NZH9 Putative uncharacterized protein; PFAM: OB-fold nucleic acid binding domain; tRNA synthetases class II (D, K and N); TIGRFAM: aspartyl-tRNA synthetase, archaeal type
YP_003508060.1	PFAM: fatty acid desaturase; SPTR: A3IXZ7 Putative uncharacterized protein; InterPro IPR005804; COGs: COG3239 Fatty acid desaturase; KEGG: bcy:Bcer98_0342 fatty acid desaturase; PFAM: Fatty acid desaturase
YP_003508061.1	COGs: COG1278 Cold shock protein; InterPro IPR002059:IPR013223:IPR011129; KEGG: pca:Pcar_2806 cold shock proteins; SMART: Cold shock protein; SPTR: A6CUY3 Cold shock protein; PFAM: Cold-shock protein DNA-binding; Ribonuclease B OB region domain; PFAM: 'Cold-shock' DNA-binding domain
YP_003508062.1	PFAM: Carboxymuconolactone decarboxylase; SPTR: Q0W0Y9 Putative carboxymuconolactone decarboxylase; InterPro IPR003779; COGs: COG0599 gamma-carboxymuconolactone decarboxylase subunit; KEGG: bbr:BB4071 4-carboxymuconolactone decarboxylase; PFAM: Carboxymuconolactone decarboxylase family; TIGRFAM: alkylhydroperoxidase AhpD family core domain
YP_003508063.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; InterPro IPR005833:IPR005834:IPR006402:IPR006439; KEGG: similar to haloacid dehalogenase-like hydrolase domain containing 3; COGs: COG1011 hydrolase (HAD superfamily); SPTR: A6GIY9 Putative uncharacterized protein; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
YP_003508064.1	COGs: COG0015 Adenylosuccinate lyase; InterPro IPR003031:IPR000362:IPR004769; KEGG: bha:BH0625 adenylosuccinate lyase; PFAM: fumarate lyase; SPTR: Q9RSE6 Adenylosuccinate lyase; TIGRFAM: adenylosuccinate lyase; PFAM: Lyase; Adenylosuccinate lyase C-terminus; TIGRFAM: adenylosuccinate lyase
YP_003508065.1	TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; PRIAM: Phosphoribosylaminoimidazolesuccinocarboxamide synthase; PFAM: SAICAR synthetase; InterPro IPR001636; KEGG: nar:Saro_1041 phosphoribosylaminoimidazole-succinocarboxamide synthase; COGs: COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase; SPTR: Q1J2B4 Phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase
YP_003508066.1	TIGRFAM: phosphoribosylformylglycinamidine synthase, purS; PFAM: phosphoribosylformylglycinamidine synthetase PurS; InterPro IPR003850; KEGG: gdi:GDI1957 putative phosphoribosylformylglycinamidine synthase; COGs: COG1828 Phosphoribosylformylglycinamidine (FGAM) synthase PurS component; SPTR: B8GGS4 Phosphoribosylformylglycinamidine synthase, purS; PFAM: Phosphoribosylformylglycinamidine (FGAM) synthase; TIGRFAM: phosphoribosylformylglycinamidine synthase, purS protein
YP_003508067.1	TIGRFAM: phosphoribosylformylglycinamidine synthase I; PRIAM: Phosphoribosylformylglycinamidine synthase; InterPro IPR010075; KEGG: bcu:BCAH820_0325 phosphoribosylformylglycinamidine synthase I; COGs: COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase glutamine amidotransferase domain; SPTR: Q5SI57 Phosphoribosylformylglycinamidine synthase 1; TIGRFAM: phosphoribosylformylglycinamidine synthase I
YP_003508068.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; InterPro IPR005833:IPR005834:IPR006439; KEGG: pap:PSPA7_6024 putative hydrolase; COGs: COG1011 hydrolase (HAD superfamily); SPTR: Q0W5S2 Putative hydrolase (HAD superfamily); PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
YP_003508069.1	TIGRFAM: phosphoribosylformylglycinamidine synthase II; PRIAM: Phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; InterPro IPR010918:IPR000728:IPR010074; KEGG: afw:Anae109_4362 phosphoribosylformylglycinamidine synthase II; COGs: COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase synthetase domain; SPTR: Q5SMH8 Phosphoribosylformylglycinamidine synthase II; PFAM: AIR synthase related protein, C-terminal domain; AIR synthase related protein, N-terminal domain; TIGRFAM: phosphoribosylformylglycinamidine synthase II
YP_003508070.1	TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; InterPro IPR000836:IPR000583:IPR005854; KEGG: nis:NIS_1547 amidophosphoribosyltransferase; COGs: COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase; SPTR: A1HSW1 Amidophosphoribosyltransferase; PFAM: Glutamine amidotransferases class-II; Phosphoribosyl transferase domain; TIGRFAM: amidophosphoribosyltransferase
YP_003508071.1	PFAM: nitroreductase; SPTR: Q9YD68 NADH dehydrogenase; InterPro IPR000415; COGs: COG0778 Nitroreductase; KEGG: bat:BAS1528 NAD(P)H-flavin oxidoreductase; PFAM: Nitroreductase family
YP_003508072.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; InterPro IPR004360; KEGG: azo:azo3713 putative bleomycin resistance protein; SPTR: A3XMR0 Bleomycin resistance protein; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
YP_003508073.1	PFAM: 3-demethylubiquinone-9 3-methyltransferase; SPTR: A4AFK7 Putative uncharacterized protein; InterPro IPR009725; COGs: COG3865 conserved hypothetical protein; KEGG: pla:Plav_3503 3-demethylubiquinone-9 3-methyltransferase; PFAM: 3-demethylubiquinone-9 3-methyltransferase
YP_003508074.1	InterPro IPR000485; PFAM: regulatory protein AsnC/Lrp family; PFAM: AsnC family
YP_003508076.1	PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; InterPro IPR001387; KEGG: spe:Spro_1454 XRE family transcriptional regulator; SPTR: A3TXR8 DNA-binding protein, putative; PFAM: Helix-turn-helix
YP_003508077.1	COGs: COG0262 Dihydrofolate reductase; InterPro IPR002734; KEGG: gsu:GSU0562 hypothetical protein; SPTR: A3KJR6 Putative dihydrofolate reductase; PFAM: bifunctional deaminase-reductase domain protein; PFAM: RibD C-terminal domain
YP_003508078.1	PFAM: bifunctional deaminase-reductase domain protein; SPTR: A7CB60 Bifunctional deaminase-reductase domain protein; InterPro IPR002734; COGs: COG0262 Dihydrofolate reductase; KEGG: cvi:CV_3295 hypothetical protein; PFAM: RibD C-terminal domain
YP_003508079.1	PFAM: transcription activator effector binding; InterPro IPR010499; KEGG: pfl:PFL_3410 hypothetical protein; SPTR: A6A8M0 Transcription activator, effector binding; PFAM: Bacterial transcription activator, effector binding domain
YP_003508080.1	PFAM: protein of unknown function DUF955; InterPro IPR010359; COGs: COG2856 Zn peptidase; KEGG: vei:Veis_3552 protein of unknown function DUF955; PFAM: Domain of unknown function (DUF955)
YP_003508081.1	PFAM: NUDIX hydrolase; SPTR: A0YS49 Putative uncharacterized protein; InterPro IPR000086; COGs: COG1051 ADP-ribose pyrophosphatase; KEGG: sfu:Sfum_3458 NUDIX hydrolase; PFAM: NUDIX domain
YP_003508082.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; SPTR: A0YX00 Dihydropteridine/dihydrofolate reductase; InterPro IPR002347:IPR002198:IPR013968; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); KEGG: sus:Acid_7390 3-oxoacyl-[acyl-carrier-protein] reductase; PFAM: short chain dehydrogenase
YP_003508083.1	PFAM: protein of unknown function DUF198; SPTR: A7CSF2 Putative uncharacterized protein; InterPro IPR003801; COGs: COG1469 conserved hypothetical protein; KEGG: rsq:Rsph17025_0639 putative GTP cyclohydrolase; PFAM: Uncharacterized ACR, COG1469
YP_003508084.1	TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; InterPro IPR002871:IPR011341; KEGG: pol:Bpro_4273 SUF system FeS assembly protein; COGs: COG0822 NifU homolog involved in Fe-S cluster formation; SPTR: A2UAF7 SUF system FeS assembly protein, NifU family; PFAM: NifU-like N terminal domain; TIGRFAM: SUF system FeS assembly protein, NifU family
YP_003508085.1	TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; InterPro IPR000192:IPR010970; KEGG: hypothetical protein; COGs: COG0520 Selenocysteine lyase; SPTR: A9RHM8 Predicted protein; PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurases, SufS subfamily
YP_003508086.1	KEGG: ank:AnaeK_1746 hypothetical protein
YP_003508087.1	KEGG: bmn:BMA10247_1045 type II secretion system protein
YP_003508088.1	PFAM: major facilitator superfamily MFS_1; SPTR: A6GMX1 Major facilitator superfamily MFS_1; InterPro IPR011701:IPR007114; COGs: COG2271 Sugar phosphate permease; KEGG: tmz:Tmz1t_1892 major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily
YP_003508089.1	PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Ig domain protein group 2 domain protein; SMART: Ig domain protein group 2 domain protein; SPTR: A0Y2M1 Serine protease; KEGG: lch:Lcho_1330 peptidase S8 and S53 subtilisin kexin sedolisin; COGs: COG1404 Subtilisin-like serine protease; InterPro IPR000209:IPR003343; PFAM: Subtilase family; Bacterial Ig-like domain (group 2)
YP_003508090.1	PFAM: protein of unknown function DUF163; SPTR: Q5SLR5 UPF0247 protein TTHA0228; InterPro IPR003742; COGs: COG1576 conserved hypothetical protein; KEGG: ank:AnaeK_0244 protein of unknown function DUF163; PFAM: Predicted SPOUT methyltransferase; TIGRFAM: conserved hypothetical protein TIGR00246
YP_003508091.1	PRIAM: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring); PFAM: dehydrogenase E1 component; InterPro IPR001017; KEGG: scl:sce8001 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring); COGs: COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component eukaryotic type alpha subunit; SPTR: Q72GU1 2-oxoisovalerate dehydrogenase subunit alpha; PFAM: Dehydrogenase E1 component
YP_003508092.1	PFAM: Transketolase central region; Transketolase domain protein; SPTR: Q5SLR3 2-oxoisovalerate dehydrogenase subunit beta; InterPro IPR005476:IPR005475; COGs: COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component eukaryotic type beta subunit; KEGG: afw:Anae109_1994 transketolase central region; PFAM: Transketolase, pyrimidine binding domain; Transketolase, C-terminal domain
YP_003508093.1	PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; SPTR: A4WK39 Catalytic domain of components of various dehydrogenase complexes; InterPro IPR004167:IPR000089:IPR001078:IPR003016; COGs: COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) protein; KEGG: acp:A2cp1_2105 catalytic domain of components of various dehydrogenase complexes; PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); e3 binding domain; Biotin-requiring enzyme; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form
YP_003508094.1	TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; InterProIPR013027:IPR000103:IPR000815:IPR001327:IPR 004099:IPR002218:IPR003953:IPR012999:IPR006258; KEGG: scl:sce8000 pyruvate dehydrogenase E3 (dihydrolipoamide dehydrogenase); COGs: COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3); SPTR: P85207 Dihydrolipoyl dehydrogenase; PFAM: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: dihydrolipoamide dehydrogenase
YP_003508095.1	PFAM: Septum formation inhibitor MinC; SPTR: Q67SI3 Probable septum site-determining protein minC; InterPro IPR005526; COGs: COG0850 Septum formation inhibitor; KEGG: sfu:Sfum_1280 septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC, C-terminal domain; TIGRFAM: septum site-determining protein MinC
YP_003508096.1	PFAM: protein of unknown function DUF420; SPTR: A3U501 YozB; InterPro IPR007352; COGs: COG2322 membrane protein; KEGG: afw:Anae109_0944 hypothetical protein; PFAM: Protein of unknown function (DUF420)
YP_003508098.1	PFAM: dihydrodipicolinate synthetase; SPTR: Q5XGL6 Dihydrodipicolinate synthase-like, mitochondrial; InterPro IPR002220; COGs: COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; KEGG: hypothetical LOC495193; PFAM: Dihydrodipicolinate synthetase family
YP_003508099.1	KEGG: tbd:Tbd_0149 putative lipoprotein
YP_003508100.1	PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593; KEGG: bja:blr7933 ABC transporter ATP-binding protein; COGs: COG1131 ABC-type multidrug transport system ATPase component; SPTR: Q5UZG7 ABC transporter ATP-binding protein; PFAM: ABC transporter
YP_003508101.1	PFAM: ABC-2 type transporter; InterPro IPR013525; KEGG: acr:Acry_0434 ABC-2 type transporter; SPTR: Q18KM1 ABC-type transport system, permease protein; PFAM: ABC-2 type transporter
YP_003508102.1	COGs: COG2986 Histidine ammonia-lyase; InterPro IPR001106:IPR005921; TIGRFAM: histidine ammonia-lyase; KEGG: mxa:MXAN_3465 histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase; SPTR: Q9RZ06 Histidine ammonia-lyase; PRIAM: Histidine ammonia-lyase; PFAM: Phenylalanine and histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase
YP_003508103.1	PFAM: UbiC transcription regulator-associated domain protein; regulatory protein DeoR; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; InterPro IPR000524:IPR001034:IPR011663; KEGG: pap:PSPA7_2355 putative transcriptional regulator; COGs: COG2188 Transcriptional regulators; SPTR: A6GLH0 Transcriptional regulator, GntR family protein; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain
YP_003508104.1	TIGRFAM: urocanate hydratase; PRIAM: Urocanate hydratase; PFAM: Urocanase; InterPro IPR000193; KEGG: afw:Anae109_2315 urocanate hydratase; COGs: COG2987 Urocanate hydratase; SPTR: Q9RZ02 Urocanate hydratase; PFAM: Urocanase; TIGRFAM: urocanate hydratase
YP_003508105.1	TIGRFAM: imidazolonepropionase; PRIAM: Imidazolonepropionase; PFAM: amidohydrolase; Amidohydrolase 3; InterPro IPR006680:IPR013108:IPR005920; KEGG: bph:Bphy_1810 imidazolonepropionase; COGs: COG1228 Imidazolonepropionase and related amidohydrolase; SPTR: Q9RZ05 Imidazolonepropionase; PFAM: Amidohydrolase family; TIGRFAM: imidazolonepropionase
YP_003508106.1	PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein; InterPro IPR003265; KEGG: mxa:MXAN_1556 putative DNA-3-methyladenine glycosylase; COGs: COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase; SPTR: A6GQ39 3-methyladenine DNA glycosylase II; PFAM: HhH-GPD superfamily base excision DNA repair protein
YP_003508107.1	TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; InterPro IPR002820; KEGG: rce:RC1_0102 molybdenum cofactor biosynthesis protein C; COGs: COG0315 Molybdenum cofactor biosynthesis enzyme; SPTR: Q1J1J3 Molybdenum cofactor biosynthesis protein C; PFAM: MoaC family; TIGRFAM: molybdenum cofactor biosynthesis protein MoaC
YP_003508108.1	KEGG: bsu:BSU09090 hypothetical protein; SPTR: P54593 Uncharacterized protein yhcI
YP_003508109.1	PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593:IPR017871; KEGG: bcr:BCAH187_A3707 bacitracin transport ATP-binding protein; COGs: COG1131 ABC-type multidrug transport system ATPase component; SPTR: A2U8U0 ABC transporter related; PFAM: ABC transporter; TIGRFAM: heme ABC exporter, ATP-binding protein CcmA
YP_003508111.1	TIGRFAM: histidinol phosphate phosphatase HisJ family; PFAM: PHP domain protein; InterPro IPR004013:IPR010140; KEGG: hhe:HH1714 hypothetical protein; COGs: COG1387 Histidinol phosphatase and related hydrolase of the PHP family; SPTR: Q9RX45 Probable histidinol-phosphatase; PFAM: PHP domain; TIGRFAM: histidinol phosphate phosphatase HisJ family
YP_003508112.1	PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; DNA polymerase X; InterPro IPR002008:IPR004013:IPR002054:IPR003141; KEGG: tbd:Tbd_1446 DNA polymerase X; COGs: COG1796 DNA polymerase IV (family X); SPTR: A1HML4 PHP C-terminal domain protein; PFAM: PHP domain
YP_003508113.1	PFAM: CBS domain containing protein; SMART: CBS domain containing protein; InterPro IPR000644; KEGG: gbm:Gbem_3300 CBS domain containing protein; COGs: COG0517 FOG: CBS domain; SPTR: A1HSL2 Putative signal transduction protein with CBS domains; PFAM: CBS domain pair
YP_003508114.1	TIGRFAM: export-related chaperone CsaA; PFAM: t-RNA-binding domain protein; InterPro IPR002547:IPR008231; KEGG: pde:Pden_2197 export-related chaperone CsaA; COGs: COG0073 EMAP domain; SPTR: A0ZE58 EMAP domain protein; PFAM: Putative tRNA binding domain; TIGRFAM: export-related chaperone CsaA
YP_003508115.1	COGs: COG0795 permease; InterPro IPR005495; KEGG: smt:Smal_0537 permease YjgP/YjgQ family protein; SPTR: A3I2C6 Putative uncharacterized protein; PFAM: permease YjgP/YjgQ family protein; PFAM: Predicted permease YjgP/YjgQ family
YP_003508116.1	PFAM: permease YjgP/YjgQ family protein; SPTR: A1HRI6 Permease YjgP/YjgQ family protein; InterPro IPR005495; COGs: COG0795 permease; KEGG: dvl:Dvul_1425 permease YjgP/YjgQ family protein; PFAM: Predicted permease YjgP/YjgQ family
YP_003508117.1	COGs: COG1452 Organic solvent tolerance protein OstA; KEGG: xau:Xaut_2836 organic solvent tolerance protein
YP_003508119.1	TIGRFAM: methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; InterPro IPR004360:IPR017515; KEGG: sus:Acid_7059 LAO/AO transport system ATPase; SPTR: O58010 Putative uncharacterized protein PH0272; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: methylmalonyl-CoA epimerase
YP_003508120.1	PFAM: SNARE associated Golgi protein; SPTR: A7CSA7 SNARE associated Golgi protein; InterPro IPR015414; COGs: COG0586 membrane-associated protein; KEGG: cbc:CbuK_1318 DedA family protein; PFAM: SNARE associated Golgi protein
YP_003508121.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; SPTR: A3RX82 3-oxoacyl-[acyl-carrier protein] reductase; InterPro IPR002347:IPR002198:IPR013968; COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; KEGG: lch:Lcho_2047 short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase
YP_003508122.1	PFAM: OsmC family protein; SPTR: Q9V0U4 Putative uncharacterized protein; InterPro IPR003718; COGs: COG1765 redox protein regulator of disulfide bond formation; KEGG: aha:AHA_0982 chain A, structural genomics; PFAM: OsmC-like protein
YP_003508123.1	PFAM: UvrD/REP helicase; SPTR: A3CVM7 UvrD/REP helicase; InterPro IPR000212:IPR014016:IPR014017; COGs: COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); KEGG: acp:A2cp1_1439 UvrD/REP helicase; PFAM: UvrD/REP helicase
YP_003508124.1	TIGRFAM: death-on-curing family protein; PFAM: filamentation induced by cAMP protein Fic; InterPro IPR003812:IPR006440; KEGG: afw:Anae109_2801 death-on-curing family protein; COGs: COG3654 Prophage maintenance system killer protein; SPTR: A0ZN23 Putative prophage maintenance system killer protein; PFAM: Fic/DOC family; TIGRFAM: death-on-curing family protein
YP_003508126.1	PFAM: aminotransferase class IV; SPTR: A3HWP1 Putative uncharacterized protein; InterPro IPR001544; COGs: COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; KEGG: dps:DP0085 D-alanine aminotransferase; PFAM: Aminotransferase class IV
YP_003508128.1	COGs: COG3857 ATP-dependent nuclease subunit B
YP_003508130.1	TIGRFAM: SpoIID/LytB domain protein; PFAM: Stage II sporulation D domain protein; InterPro IPR013693:IPR013486; KEGG: dol:Dole_0035 SpoIID/LytB domain-containing protein; COGs: COG2385 Sporulation protein and related protein; SPTR: A3YVH2 Stage II sporulation protein D-like; PFAM: Stage II sporulation protein; TIGRFAM: SpoIID/LytB domain
YP_003508131.1	TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; InterProIPR001757:IPR001756:IPR008250:IPR005834:IPR 000150:IPR006416:IPR006404; KEGG: heavy metal translocating P-type ATPase; COGs: COG2217 Cation transport ATPase; SPTR: A0ZCB1 Cd/Co/Hg/Pb/Zn-translocating P-type ATPase; PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: heavy metal translocating P-type ATPase; heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC
YP_003508132.1	PFAM: carboxyl transferase; SPTR: B5ID62 Putative uncharacterized protein; InterPro IPR000438:IPR000022:IPR011762:IPR011763; COGs: COG4799 Acetyl-CoA carboxylase carboxyltransferase component (subunits alpha and beta); KEGG: bha:BH2957 methylmalonyl-CoA decarboxylase alpha subunit; PFAM: Carboxyl transferase domain
YP_003508133.1	SPTR: A1HT06 Polysaccharide pyruvyl transferase; KEGG: bcr:BCAH187_A1063 CsaB protein; PFAM: polysaccharide pyruvyl transferase; InterPro IPR007345; COGs: COG2327 conserved hypothetical protein; PFAM: Polysaccharide pyruvyl transferase; TIGRFAM: polysaccharide pyruvyl transferase CsaB
YP_003508134.1	KEGG: cko:CKO_03849 hypothetical protein; SPTR: A1HT07 Putative uncharacterized protein
YP_003508135.1	TIGRFAM: uridine kinase; PFAM: phosphoribulokinase/uridine kinase; InterProIPR006082:IPR000764:IPR006083:IPR000217:IPR 010916; KEGG: cvi:CV_1085 uridine kinase; COGs: COG0572 Uridine kinase; SPTR: Q5SKR5 Uridine kinase; PFAM: Phosphoribulokinase / Uridine kinase family; TIGRFAM: uridine kinase
YP_003508136.1	PFAM: PfkB domain protein; SPTR: A7VG43 Putative uncharacterized protein; InterPro IPR011611:IPR001766:IPR002173; COGs: COG0524 Sugar kinase ribokinase family; KEGG: mxa:MXAN_3087 fructokinase; PFAM: pfkB family carbohydrate kinase
YP_003508137.1	PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; InterProIPR005116:IPR003439:IPR013611:IPR003593:IPR 017871; KEGG: bha:BH1140 sugar ABC transportor ATP-binding protein; COGs: COG3839 ABC-type sugar transport systems ATPase components; SPTR: A7VSS8 Putative uncharacterized protein; PFAM: ABC transporter; TOBE domain
YP_003508138.1	PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; SPTR: A5WJ47 Hypothetical iron-sulfur-binding reductase; InterPro IPR001450:IPR004017:IPR017900; COGs: COG0247 Fe-S oxidoreductase; KEGG: scl:sce0368 putative iron-sulfur protein, transmembrane protein; PFAM: Cysteine-rich domain
YP_003508140.1	PFAM: SCP-like extracellular; SPTR: A6GBB9 Putative uncharacterized protein; InterPro IPR014044; COGs: COG2340 Uncharacterized protein with SCP/PR1 domains; KEGG: mxa:MXAN_5965 hypothetical protein; PFAM: SCP-like extracellular protein
YP_003508141.1	PFAM: acid phosphatase/vanadium-dependent haloperoxidase related; SPTR: Q9FXC5 F12A21.27 (At1g67600) (Putative uncharacterized protein); InterPro IPR003832; COGs: COG1963 conserved hypothetical protein; KEGG: bha:BH3402 hypothetical protein; PFAM: Divergent PAP2 family
YP_003508142.1	PRIAM: Methylenetetrahydrofolate dehydrogenase (NADP(+)); PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; InterPro IPR000672; KEGG: acr:Acry_2656 methylenetetrahydrofolate dehydrogenase (NADP(+)); COGs: COG0190 5 10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase; SPTR: Q72JL7 Bifunctional protein folD; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
YP_003508143.1	TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; InterPro IPR006027:IPR011605; KEGG: ank:AnaeK_2830 NusB antitermination factor; COGs: COG0781 Transcription termination factor; SPTR: Q5SJ93 N utilization substance protein B homolog; PFAM: NusB family; TIGRFAM: transcription antitermination factor NusB
YP_003508144.1	PFAM: protein of unknown function DUF322; InterPro IPR005531; KEGG: bha:BH2786 hypothetical protein; PFAM: Protein of unknown function (DUF322)
YP_003508145.1	PFAM: inner-membrane translocator; SPTR: A3JC84 Inner-membrane translocator; InterPro IPR001851; COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; KEGG: dar:Daro_2358 inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component
YP_003508146.1	PFAM: AMP-dependent synthetase and ligase; SPTR: Q9YCF0 Putative fatty-acid--CoA ligase; InterPro IPR000873; COGs: COG1022 Long-chain acyl-CoA synthetase (AMP-forming); KEGG: azo:azo3447 putative acetyl-coenzyme A synthetase; PFAM: AMP-binding enzyme
YP_003508147.1	SMART: AAA ATPase; SPTR: A4BB17 ABC transporter related protein; PFAM: ABC transporter related; COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003439:IPR003593; KEGG: tmz:Tmz1t_0401 ABC transporter related; PFAM: ABC transporter
YP_003508148.1	PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593:IPR017871; KEGG: azc:AZC_4584 ABC transporter substrate binding protein; COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; SPTR: A3TZW4 High-affinity branched-chain amino acid transport ATP-binding protein; PFAM: ABC transporter
YP_003508149.1	PFAM: inner-membrane translocator; SPTR: A3JC83 Inner-membrane translocator; InterPro IPR001851; COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; KEGG: rfr:Rfer_4063 inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component
YP_003508150.1	PFAM: Extracellular ligand-binding receptor; SPTR: A6EZ41 Extracellular ligand-binding receptor; InterPro IPR000709:IPR001828; COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; KEGG: dac:Daci_0029 extracellular ligand-binding receptor; PFAM: Receptor family ligand binding region
YP_003508151.1	PFAM: Negative transcriptional regulator; SPTR: A3YBG2 Transcriptional repressor of sporulation and degradative enzyme production; InterPro IPR007396; COGs: COG2808 Transcriptional regulator; KEGG: bat:BAS3311 protease synthase and sporulation negative regulatory protein PAI 2; PFAM: Putative FMN-binding domain
YP_003508152.1	PFAM: GCN5-related N-acetyltransferase; SPTR: A4ENT7 Probable amino-acid acetyltransferase; InterPro IPR000182; COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; KEGG: aba:Acid345_3969 putative acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_003508153.1	PFAM: peptidase U62 modulator of DNA gyrase; SPTR: A1HQ83 Peptidase U62, modulator of DNA gyrase; InterPro IPR002510; COGs: COG0312 Zn-dependent protease and their inactivated homologs; KEGG: mxa:MXAN_2518 PmbA/TldD protein; PFAM: Putative modulator of DNA gyrase
YP_003508154.1	PFAM: peptidase U62 modulator of DNA gyrase; SPTR: A4BEA3 Putative TldD protein; InterPro IPR002510; COGs: COG0312 Zn-dependent protease and their inactivated homologs; KEGG: vpa:VPA0138 putative TldD protein; PFAM: Putative modulator of DNA gyrase
YP_003508155.1	PRIAM: N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; InterPro IPR002508; KEGG: mxa:MXAN_2003 N-acetylmuramoyl-L-alanine amidase, family 3; COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; SPTR: A3LJH4 N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase
YP_003508156.1	SPTR: A1Y2X1 Putative type II DNA modification methylase; KEGG: plu:plu2710 hypothetical protein; InterPro IPR002296:IPR002052
YP_003508157.1	TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; InterPro IPR004837:IPR004481; KEGG: tmz:Tmz1t_0272 Na+/Ca+ antiporter, CaCA family; COGs: COG0530 Ca2+/Na+ antiporter; SPTR: A6GQM0 K+-dependent Na+/Ca+ exchanger related-protein; PFAM: Sodium/calcium exchanger protein; TIGRFAM: K+-dependent Na+/Ca+ exchanger related-protein
YP_003508158.1	TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; InterPro IPR010372:IPR005790; KEGG: bsu:BSU25560 DNA polymerase III subunit delta; COGs: COG1466 DNA polymerase III delta subunit; SPTR: P54459 Uncharacterized protein yqeN; PFAM: DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit
YP_003508159.1	KEGG: ilo:IL2508 hypothetical protein
YP_003508161.1	TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; InterPro IPR010656:IPR011853; KEGG: rfr:Rfer_1634 TRAP transporter, 4TM/12TM fusion protein; COGs: COG4666 TRAP-type uncharacterized transport system fused permease components; SPTR: A4WIL5 TRAP transporter, 4TM/12TM fusion protein; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein
YP_003508162.1	TIGRFAM: TRAP transporter solute receptor, TAXI family; SPTR: A4WIL4 TRAP transporter solute receptor, TAXI family; InterPro IPR011852; COGs: COG2358 TRAP-type uncharacterized transport system periplasmic component; KEGG: pnu:Pnuc_0468 TRAP transporter solute receptor TAXI family protein; TIGRFAM: TRAP transporter solute receptor, TAXI family
YP_003508163.1	PFAM: major facilitator superfamily MFS_1; protein of unknown function DUF894 DitE; InterPro IPR011701:IPR010290:IPR007114; KEGG: mag:amb3244 major facilitator superfamily permease; SPTR: A2VZ25 Putative uncharacterized protein; PFAM: Major Facilitator Superfamily
YP_003508164.1	PFAM: aminoglycoside phosphotransferase; InterPro IPR002575; KEGG: hap:HAPS_1073 predicted choline kinase involved in LPS biosynthesis; PFAM: Phosphotransferase enzyme family
YP_003508165.1	TIGRFAM: uracil phosphoribosyltransferase; PRIAM: Uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; InterPro IPR000836:IPR005765; KEGG: bcy:Bcer98_3834 uracil phosphoribosyltransferase; COGs: COG0035 Uracil phosphoribosyltransferase; SPTR: Q5SIQ7 Uracil phosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: uracil phosphoribosyltransferase
YP_003508166.1	PFAM: glycosyl transferase family 4; SPTR: A0ZF91 Glycosyl transferase, family 4; InterPro IPR000715; COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; KEGG: bat:BAS5050 glycosyl transferase, group 4 family protein; PFAM: Glycosyl transferase family 4
YP_003508167.1	SPTR: Q5SKZ7 NADH-quinone oxidoreductase subunit 15; PRIAM: NADH dehydrogenase (quinone)
YP_003508168.1	TIGRFAM: excinuclease ABC, C subunit; PFAM: excinuclease ABC C subunit domain protein; Excinuclease ABC C subunit domain protein; UvrB/UvrC protein; SMART: Excinuclease ABC C subunit domain protein; InterPro IPR000305:IPR001162:IPR001943:IPR004791; KEGG: sml:Smlt1645 putative excinuclease ABC subunit C; COGs: COG0322 Nuclease subunit of the excinuclease complex; SPTR: Q5SI32 UvrABC system protein C; PFAM: GIY-YIG catalytic domain; UvrC Helix-hairpin-helix N-terminal; UvrB/uvrC motif; TIGRFAM: excinuclease ABC, C subunit
YP_003508169.1	PFAM: DNA methylase N-4/N-6 domain protein; SPTR: A7BTI8 DNA methylase N-4/N-6; InterPro IPR001091:IPR002295:IPR002941; COGs: COG0863 DNA modification methylase; KEGG: sal:Sala_2300 DNA methylase N-4/N-6; PFAM: DNA methylase
YP_003508170.1	PFAM: Restriction endonuclease BglII; InterPro IPR015278; KEGG: sal:Sala_2301 hypothetical protein; SPTR: A7BTI9 Putative uncharacterized protein; PFAM: Restriction endonuclease BglII
YP_003508171.1	KEGG: sfu:Sfum_1218 homoserine dehydrogenase; COGs: COG0460 Homoserine dehydrogenase; SPTR: A4AH69 Homoserine dehydrogenase; PRIAM: Homoserine dehydrogenase; PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; InterPro IPR001342:IPR005106; PFAM: Homoserine dehydrogenase, NAD binding domain; Homoserine dehydrogenase
YP_003508173.1	TIGRFAM: threonine synthase; PRIAM: Threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; InterPro IPR001926:IPR000634:IPR004450; KEGG: sat:SYN_02122 threonine synthase; COGs: COG0498 Threonine synthase; SPTR: A1ZLX0 Threonine synthase; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: threonine synthase
YP_003508174.1	PFAM: C-methyltransferase; InterPro IPR013691; KEGG: sme:SM_b21061 putative NDP-hexose 3-C-methyltransferase protein; SPTR: A0YZB1 Putative NDP-hexose 3-C-methyltransferase protein; PFAM: C-methyltransferase; Hypothetical methyltransferase
YP_003508175.1	PFAM: regulatory protein LysR; SPTR: A8RZS6 Putative uncharacterized protein; InterPro IPR000847; COGs: COG2005 N-terminal domain of molybdenum-binding protein; KEGG: dal:Dalk_4083 putative transcriptional regulator, ModE family; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; TIGRFAM: ModE molybdate transport repressor domain
YP_003508176.1	KEGG: sme:SM_b21063 nucleotide-binding protein; SPTR: A0YS10 Hypothetical nucleotide-binding protein
YP_003508177.1	KEGG: noc:Noc_1844 hypothetical protein; SPTR: Q8TLJ8 Predicted protein
YP_003508178.1	KEGG: noc:Noc_1845 hypothetical protein
YP_003508179.1	PFAM: aminotransferase class I and II; Cys/Met metabolism pyridoxal-phosphate-dependent protein; SPTR: Q56232 Aspartate aminotransferase; InterPro IPR001176:IPR004839:IPR000277:IPR004838; COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; KEGG: mxa:MXAN_3386 putative aspartate aminotransferase; PFAM: Aminotransferase class I and II
YP_003508180.1	InterPro IPR007295; PFAM: protein of unknown function DUF402; PFAM: Protein of unknown function (DUF402)
YP_003508181.1	TIGRFAM: phenylacetate-CoA oxygenase, PaaG subunit; PFAM: phenylacetic acid catabolic family protein; InterPro IPR007814:IPR011881; KEGG: acr:Acry_2608 phenylacetate-CoA oxygenase subunit PaaA; COGs: COG3396 conserved hypothetical protein; SPTR: A3U7D9 Phenylacetic acid degradation protein; PFAM: Phenylacetic acid catabolic protein; TIGRFAM: phenylacetate-CoA oxygenase, PaaG subunit
YP_003508182.1	PFAM: phenylacetic acid degradation B; SPTR: A4BNV7 Phenylacetic acid degradation protein; InterPro IPR009359; COGs: COG3460 Uncharacterized protein of phenylacetate metabolism; KEGG: nha:Nham_0929 phenylacetate-CoA oxygenase subunit PaaB; PFAM: Phenylacetic acid degradation B; TIGRFAM: phenylacetate-CoA oxygenase, PaaH subunit
YP_003508183.1	TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; InterPro IPR007814:IPR011882; KEGG: reu:Reut_B3737 phenylacetate-CoA oxygenase, PaaI subunit; COGs: COG3396 conserved hypothetical protein; SPTR: A3VFT1 Phenylacetic acid degradation protein PaaI; PFAM: Phenylacetic acid catabolic protein; TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit
YP_003508184.1	TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59; InterPro IPR002744:IPR011883; KEGG: reh:H16_B1360 phenylacetic acid degradation protein D; COGs: COG2151 metal-sulfur cluster biosynthetic protein; SPTR: P76080 Phenylacetic acid degradation protein paaD; PFAM: Domain of unknown function DUF59; TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit
YP_003508185.1	KEGG: dac:Daci_2225 hypothetical protein
YP_003508186.1	PFAM: transport system permease protein; SPTR: O34933 Fe(3+)-citrate import system permease protein yfmD; InterPro IPR000522; COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; KEGG: bsu:BSU07510 hypothetical protein; PFAM: FecCD transport family
YP_003508187.1	InterPro IPR002491; PFAM: periplasmic binding protein; COGs: COG4594 ABC-type Fe3+-citrate transport system periplasmic component; KEGG: eca:ECA1076 iron-dicitrate transporter substrate-binding subunit; SPTR: P15028 Fe(3+) dicitrate-binding periplasmic protein; PFAM: Periplasmic binding protein
YP_003508188.1	PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593:IPR017871; KEGG: bsu:BSU33290 ferrichrome ABC transporter ATP-binding protein; COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; SPTR: P49938 Ferrichrome transport ATP-binding protein fhuC; PFAM: ABC transporter
YP_003508189.1	PFAM: transport system permease protein; SPTR: O34832 Fe(3+)-citrate import system permease protein yfmE; InterPro IPR000522; COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; KEGG: pol:Bpro_4778 transport system permease protein; PFAM: FecCD transport family
YP_003508190.1	TIGRFAM: flavodoxin; PFAM: flavodoxin/nitric oxide synthase; InterPro IPR008254:IPR001226:IPR010086; KEGG: aha:AHA_3275 flavodoxin FldB; COGs: COG0716 Flavodoxins; SPTR: P10340 Flavodoxin; PFAM: Flavodoxin; TIGRFAM: flavodoxin, long chain
YP_003508192.1	PFAM: periplasmic binding protein; SPTR: A3KJ25 Putative binding-protein-dependent transport lipoprotein; InterPro IPR008091:IPR002491; COGs: COG4594 ABC-type Fe3+-citrate transport system periplasmic component; KEGG: bha:BH1037 iron (III) dicitrate transport system (permease); PFAM: Periplasmic binding protein
YP_003508193.1	PFAM: periplasmic binding protein; SPTR: A0ZBX0 Iron(III) dicitrate-binding periplasmic protein; InterPro IPR002491; COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; KEGG: bcu:BCAH820_0670 iron compound ABC transporter, iron compound-binding protein; PFAM: Periplasmic binding protein
YP_003508194.1	InterPro IPR013538; PFAM: Activator of Hsp90 ATPase 1 family protein; PFAM: Activator of Hsp90 ATPase homolog 1-like protein
YP_003508195.1	PFAM: periplasmic binding protein; SPTR: A6A110 Periplasmic binding family protein; InterPro IPR002491; COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; KEGG: vco:VC0395_1001 vibriobactin and enterobactin ABC transporter, periplasmic vibriobactin/enterobactin-binding protein; PFAM: Periplasmic binding protein
YP_003508196.1	PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; InterPro IPR013563:IPR003439:IPR003593:IPR017871; KEGG: cti:RALTA_A1727 putative oligopeptide ABC transporter, fused atp_binding components; COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase; SPTR: B8AZ59 Putative uncharacterized protein; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: phosphonate C-P lyase system protein PhnK
YP_003508197.1	PFAM: periplasmic binding protein; SPTR: A3ISC0 Iron(III) dicitrate-binding protein of ABC transporter; InterPro IPR002491; COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; KEGG: bce:BC0616 iron(III) dicitrate-binding protein; PFAM: Periplasmic binding protein
YP_003508198.1	KEGG: dac:Daci_1018 hypothetical protein
YP_003508199.1	PFAM: nitroreductase; SPTR: A1ZYX5 Protein YdjA; InterPro IPR000415; COGs: COG0778 Nitroreductase; KEGG: hypothetical protein; PFAM: Nitroreductase family
YP_003508200.1	SPTR: A2U323 Magnesium-chelatase subunit ChlI; COGs: COG1239 Mg-chelatase subunit ChlI; KEGG: aba:Acid345_3256 magnesium protoporphyrin chelatase, putative
YP_003508201.1	SMART: von Willebrand factor type A; SPTR: A4ARP8 Putative uncharacterized protein; InterPro IPR002035; COGs: COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain; KEGG: aba:Acid345_3257 von Willebrand factor, type A
YP_003508202.1	COGs: COG4115 conserved hypothetical protein; InterPro IPR009614; KEGG: dal:Dalk_2399 addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin Txe/YoeB; SPTR: A0YN27 Putative uncharacterized protein; TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Plasmid encoded toxin Txe; TIGRFAM: toxin-antitoxin system, toxin component, Txe/YoeB family
YP_003508203.1	TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; InterPro IPR003756:IPR006442; KEGG: dal:Dalk_2398 prevent-host-death family protein; SPTR: A0YN28 Putative uncharacterized protein; PFAM: Phd_YefM; TIGRFAM: prevent-host-death family protein
YP_003508205.1	SPTR: A4HM87 Proteophosphoglycan ppg4; InterPro IPR000637; KEGG: TGas090a21.1, srrm1; serine/arginine repetitive matrix 1
YP_003508206.1	PFAM: iron permease FTR1; SPTR: A4A4A6 Iron permease FTR1/Cytochrome c domain protein; InterPro IPR004923; COGs: COG0672 High-affinity Fe2+/Pb2+ permease; KEGG: cak:Caul_2302 iron permease FTR1; PFAM: Iron permease FTR1 family; TIGRFAM: FTR1 family protein
YP_003508207.1	PFAM: Imelysin
YP_003508208.1	PFAM: protein of unknown function DUF162; SPTR: A6GNH6 Putative uncharacterized protein; InterPro IPR003741; COGs: COG1556 conserved hypothetical protein; KEGG: azo:azo1168 hypothetical protein; PFAM: Uncharacterised ACR, YkgG family COG1556
YP_003508209.1	TIGRFAM: 3-dehydroquinate dehydratase, type II; PRIAM: 3-dehydroquinate dehydratase; PFAM: dehydroquinase class II; InterPro IPR001874; KEGG: aroQ; 3-dehydroquinate dehydratase ; K03786 3-dehydroquinate dehydratase II; COGs: COG0757 3-dehydroquinate dehydratase II; SPTR: Q5SIL5 3-dehydroquinate dehydratase; PFAM: Dehydroquinase class II; TIGRFAM: 3-dehydroquinate dehydratase, type II
YP_003508211.1	PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593:IPR017871; KEGG: mfa:Mfla_1607 ABC transporter related; COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; SPTR: Q1H0W2 Hemin import ATP-binding protein hmuV; PFAM: ABC transporter
YP_003508212.1	PFAM: transport system permease protein; SPTR: A0NY18 Putative hemin transport system permease transmembrane protein; KEGG: mrd:Mrad2831_4589 transport system permease protein; COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; PFAM: FecCD transport family
YP_003508214.1	PFAM: periplasmic binding protein; SPTR: A7VMQ4 Periplasmic binding protein; InterPro IPR002491; COGs: COG4558 ABC-type hemin transport system periplasmic component; KEGG: spe:Spro_2167 periplasmic binding protein; PFAM: Periplasmic binding protein
YP_003508215.1	PFAM: Antibiotic biosynthesis monooxygenase; SPTR: A3EPH8 Putative uncharacterized protein; InterPro IPR007138; COGs: COG2329 Uncharacterized protein involved in biosynthesis of extracellular polysaccharides; KEGG: mgm:Mmc1_2368 antibiotic biosynthesis monooxygenase; PFAM: Antibiotic biosynthesis monooxygenase
YP_003508216.1	PFAM: BioY protein; SPTR: A4AGL9 Putative biotin synthase; InterPro IPR003784; COGs: COG1268 conserved hypothetical protein; KEGG: rpa:RPA2447 biotin synthase; PFAM: BioY family
YP_003508217.1	TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; Helix-turn-helix type 11 domain protein; biotin protein ligase domain protein; InterPro IPR003142:IPR013196:IPR004143:IPR004408; KEGG: ade:Adeh_2388 biotin--acetyl-CoA-carboxylase ligase; COGs: COG0340 Biotin-(acetyl-CoA carboxylase) ligase; SPTR: A6CRW9 BirA; PFAM: Biotin/lipoate A/B protein ligase family; HTH domain; Biotin protein ligase C terminal domain; TIGRFAM: BirA biotin operon repressor domain; birA, biotin-[acetyl-CoA-carboxylase] ligase region
YP_003508218.1	PFAM: Protein of unknown function DUF1800; SPTR: A7CLI2 Putative signal peptide protein; InterPro IPR014917; COGs: COG5267 conserved hypothetical protein; KEGG: bch:Bcen2424_1936 hypothetical protein; PFAM: Protein of unknown function (DUF1800)
YP_003508219.1	PFAM: protein of unknown function DUF1501; SPTR: A1ZWG9 Putative uncharacterized protein; InterPro IPR010869:IPR006311; COGs: COG4102 conserved hypothetical protein; KEGG: cvi:CV_3166 hypothetical protein; PFAM: Protein of unknown function (DUF1501)
YP_003508220.1	PFAM: oxidoreductase domain protein; Oxidoreductase domain; SPTR: A0Z9A6 Myo-inositol-2-dehydrogenase; InterPro IPR000683:IPR004104; COGs: COG0673 dehydrogenase and related protein; KEGG: mmw:Mmwyl1_0536 oxidoreductase domain-containing protein; PFAM: Oxidoreductase family, C-terminal alpha/beta domain; Oxidoreductase family, NAD-binding Rossmann fold
YP_003508221.1	TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: protein of unknown function DUF450; type III restriction protein res subunit; SMART: DEAD-like helicase; InterProIPR007409:IPR006935:IPR014001:IPR014021:IPR 004473; KEGG: aba:Acid345_3755 type I site-specific deoxyribonuclease, HsdR family; COGs: COG0610 Type I site-specific restriction-modification system R (restriction) subunit and related helicase; SPTR: A3ZXJ9 Type I restriction-modification system endonuclease; PFAM: Type III restriction enzyme, res subunit; Type I restriction enzyme R protein N terminus (HSDR_N); TIGRFAM: type I site-specific deoxyribonuclease, HsdR family
YP_003508222.1	KEGG: mca:MCA0837 hypothetical protein; SPTR: A0YK32 Putative uncharacterized protein
YP_003508223.1	PFAM: restriction modification system DNA specificity domain; SPTR: A3XZ20 Type I restriction-modification system, S subunit, EcoA family protein; InterPro IPR000055; COGs: COG0732 Restriction endonuclease S subunits; KEGG: mca:MCA0836 type I restriction-modification system S subunit; PFAM: Type I restriction modification DNA specificity domain
YP_003508224.1	PRIAM: Site-specific DNA-methyltransferase (adenine-specific); PFAM: N-6 DNA methylase; InterPro IPR002296:IPR003356:IPR002052; KEGG: aba:Acid345_3758 N-6 DNA methylase; COGs: COG0286 Type I restriction-modification system methyltransferase subunit; SPTR: Q2FSK4 N-6 DNA methylase; PFAM: N-6 DNA Methylase; TIGRFAM: type I restriction system adenine methylase (hsdM)
YP_003508225.1	PRIAM: Tagatose-bisphosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; InterPro IPR002915; KEGG: bja:bll6350 tagatose 1,6-diphosphate aldolase; COGs: COG3684 Tagatose-1 6-bisphosphate aldolase; SPTR: P26593 Tagatose 1,6-diphosphate aldolase; PFAM: DeoC/LacD family aldolase; TIGRFAM: tagatose 1,6-diphosphate aldolase
YP_003508226.1	PFAM: PfkB domain protein; SPTR: P32143 Uncharacterized sugar kinase yihV; InterPro IPR002139:IPR011611:IPR002173; COGs: COG0524 Sugar kinase ribokinase family; KEGG: carbohydrate kinase, PfkB; PFAM: pfkB family carbohydrate kinase
YP_003508227.1	KEGG: ypm:YP_0375 hypothetical protein; SPTR: A7CT32 Putative uncharacterized protein
YP_003508228.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A3ITB6 Permease protein of sugar ABC transporter; InterPro IPR000515; COGs: COG0395 ABC-type sugar transport system permease component; KEGG: atc:AGR_L_3066 putative multiple sugar transport system permease protein; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003508229.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A3ITB5 Permease protein of sugar ABC transporter; InterPro IPR000515; COGs: COG1175 ABC-type sugar transport systems permease components; KEGG: atc:AGR_L_3068 ABC transporter, permease protein, MalFG family; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003508230.1	PFAM: extracellular solute-binding protein family 1; SPTR: O51923 Trehalose/maltose binding protein; InterPro IPR006059; COGs: COG1653 ABC-type sugar transport system periplasmic component; KEGG: atc:AGR_L_3070 ABC transporter, periplasmic substrate-binding protein, solute-binding family 1; PFAM: Bacterial extracellular solute-binding protein
YP_003508231.1	PFAM: Malate/L-lactate dehydrogenase; SPTR: A4EUS5 Malate/L-lactate dehydrogenase family protein; InterPro IPR003767; COGs: COG2055 Malate/L-lactate dehydrogenase; KEGG: mno:Mnod_3707 malate/L-lactate dehydrogenase; PFAM: Malate/L-lactate dehydrogenase
YP_003508232.1	SPTR: A3VNP8 Putative phosphoglycerate dehydrogenase; KEGG: bpt:Bpet0409 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; InterPro IPR006139:IPR006140; COGs: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
YP_003508233.1	PRIAM: Altronate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; InterPro IPR007392; KEGG: csa:Csal_1766 altronate dehydratase; COGs: COG2721 Altronate dehydratase; SPTR: A8MDW1 D-galactarate dehydratase/Altronate hydrolase domain protein; PFAM: D-galactarate dehydratase / Altronate hydrolase, C terminus
YP_003508234.1	PFAM: SAF domain protein; InterPro IPR013974; KEGG: bpt:Bpet0415 hypothetical protein; SPTR: Q9HIE8 Putative uncharacterized protein Ta1392; PFAM: SAF domain
YP_003508235.1	PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; InterPro IPR000485:IPR000524:IPR011711; KEGG: mno:Mnod_6398 transcriptional regulator, GntR family; COGs: COG1802 Transcriptional regulators; SPTR: A1HR75 Transcriptional regulator, GntR family; PFAM: FCD domain; Bacterial regulatory proteins, gntR family
YP_003508236.1	TIGRFAM: glucokinase regulatory-like protein; SPTR: Q1J3J3 N-acetylmuramic acid 6-phosphate etherase; InterPro IPR005486:IPR005488; COGs: COG2103 sugar phosphate isomerase; KEGG: spe:Spro_3661 N-acetylmuramic acid-6-phosphate etherase; PFAM: SIS domain; TIGRFAM: N-acetylmuramic acid 6-phosphate etherase
YP_003508237.1	PFAM: ATPase BadF/BadG/BcrA/BcrD type; SPTR: A2BN46 Predicted N-acetylglucosamine kinase; InterPro IPR002731; COGs: COG2971 N-acetylglucosamine kinase; KEGG: aba:Acid345_3353 ATPase, BadF/BadG/BcrA/BcrD type; PFAM: BadF/BadG/BcrA/BcrD ATPase family
YP_003508238.1	PFAM: Amidohydrolase 3; amidohydrolase; SPTR: A1HLV8 Amidohydrolase 3; InterPro IPR006680:IPR013108; COGs: COG1574 metal-dependent hydrolase with the TIM-barrel fold; KEGG: acp:A2cp1_2120 amidohydrolase 3; PFAM: Amidohydrolase family
YP_003508239.1	PFAM: VanW family protein; SPTR: A1HTH4 VanW family protein; InterPro IPR007391; COGs: COG2720 Uncharacterized vancomycin resistance protein; KEGG: bca:BCE_0672 hypothetical protein; PFAM: VanW like protein
YP_003508240.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; InterPro IPR000160; KEGG: pmy:Pmen_1357 diguanylate cyclase; COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; SPTR: A6CMH3 Diguanylate cyclase (GGDEF domain); PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_003508241.1	PFAM: protein of unknown function DUF205; SPTR: Q9ZAF3 UPF0078 membrane protein TT_C0841; InterPro IPR003811; COGs: COG0344 membrane protein; KEGG: gme:Gmet_3020 acyl-phosphate glycerol-3-phosphate acyltransferase; PFAM: Domain of unknown function DUF; TIGRFAM: conserved hypothetical integral membrane protein TIGR00023
YP_003508242.1	PFAM: oxidoreductase molybdopterin binding; SPTR: A0YX48 Oxidoreductase, molybdopterin binding; InterPro IPR000572; COGs: COG2041 Sulfite oxidase; KEGG: rpb:RPB_3632 oxidoreductase, molybdopterin binding; PFAM: Oxidoreductase molybdopterin binding domain
YP_003508243.1	PFAM: protein of unknown function DUF190; SPTR: A1HUA8 Putative uncharacterized protein; InterPro IPR003793; COGs: COG1993 conserved hypothetical protein; KEGG: noc:Noc_2284 hypothetical protein; PFAM: Uncharacterized ACR, COG1993
YP_003508244.1	SPTR: P61785 Protein crcB homolog; KEGG: oca:OCAR_4903 CrcB protein; PFAM: Camphor resistance CrcB protein; InterPro IPR003691; TIGRFAM: CrcB protein; COGs: COG0239 Integral membrane protein possibly involved in chromosome condensation; PFAM: CrcB-like protein; TIGRFAM: crcB protein
YP_003508246.1	KEGG: hch:HCH_00157 QXW lectin repeat-containing protein
YP_003508247.1	TIGRFAM: queuine tRNA-ribosyltransferase; tRNA-guanine transglycosylase, various specificities; PRIAM: Queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; InterPro IPR002616:IPR004803; KEGG: bcb:BCB4264_A4536 queuine tRNA-ribosyltransferase; COGs: COG0343 Queuine/archaeosine tRNA-ribosyltransferase; SPTR: Q72H19 Queuine tRNA-ribosyltransferase; PFAM: Queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylase, queuosine-34-forming; tRNA-guanine transglycosylases, various specificities
YP_003508248.1	PFAM: protein of unknown function UPF0118; SPTR: A0YPA0 Putative uncharacterized protein; InterPro IPR002549; COGs: COG0628 permease; KEGG: afr:AFE_0571 hypothetical protein; PFAM: Domain of unknown function DUF20
YP_003508249.1	PFAM: protein of unknown function UPF0118; SPTR: A0ZCW9 Putative uncharacterized protein; InterPro IPR002549; COGs: COG0628 permease; KEGG: acp:A2cp1_3544 protein of unknown function UPF0118; PFAM: Domain of unknown function DUF20
YP_003508250.1	PFAM: Peptidase M23; InterPro IPR016047:IPR001854; KEGG: bha:BH2643 hypothetical protein; PFAM: Peptidase family M23
YP_003508251.1	TIGRFAM: ribosomal protein L28; InterPro IPR001383; SPTR: P60494 50S ribosomal protein L28; TIGRFAM: ribosomal protein L28
YP_003508252.1	TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; InterPro IPR001872; KEGG: ilo:IL1127 lipoprotein signal peptidase; COGs: COG0597 Lipoprotein signal peptidase; SPTR: A3INZ5 Signal peptidase II; PFAM: Signal peptidase (SPase) II; TIGRFAM: lipoprotein signal peptidase
YP_003508253.1	TIGRFAM: ATP-dependent metalloprotease FtsH; PRIAM: Microtubule-severing ATPase; PFAM: AAA ATPase central domain protein; peptidase M41; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; InterProIPR011546:IPR000642:IPR003959:IPR011704:IPR 003593:IPR003960:IPR005936; SPTR: A1HRR8 ATP-dependent metalloprotease FtsH; KEGG: dde:Dde_1513 FtsH peptidase; COGs: COG0465 ATP-dependent Zn protease; SMART: AAA ATPase; PFAM: Peptidase family M41; FtsH Extracellular; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent metalloprotease FtsH
YP_003508254.1	PFAM: Tetratricopeptide TPR_4; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; InterPro IPR001440:IPR011717:IPR013026; KEGG: aba:Acid345_0917 tetratricopeptide repeat protein; SPTR: Q2FT74 Tetratricopeptide TPR_2; PFAM: Tetratricopeptide repeat; Tetratricopeptide repeat
YP_003508255.1	TIGRFAM: methylglyoxal synthase; PRIAM: Methylglyoxal synthase; PFAM: MGS domain protein; InterPro IPR011607:IPR004363; KEGG: rpi:Rpic_2382 methylglyoxal synthase; COGs: COG1803 Methylglyoxal synthase; SPTR: Q5SHD6 Methylglyoxal synthase; PFAM: MGS-like domain; TIGRFAM: methylglyoxal synthase
YP_003508257.1	PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; SPTR: O28761 Putative uncharacterized protein; InterPro IPR000182:IPR003781; COGs: COG1042 Acyl-CoA synthetase (NDP forming); KEGG: mgm:Mmc1_1098 CoA-binding domain protein; PFAM: Acetyltransferase (GNAT) family; CoA binding domain
YP_003508258.1	KEGG: dal:Dalk_2235 hypothetical protein
YP_003508259.1	PFAM: protein of unknown function DUF344; SPTR: A3RPS0 Putative uncharacterized protein; InterPro IPR005660; COGs: COG2326 conserved hypothetical protein; KEGG: met:M446_5330 hypothetical protein; PFAM: Polyphosphate kinase 2
YP_003508260.1	PFAM: WD-40 repeat protein; SMART: WD-40 repeat protein; InterPro IPR001680; KEGG: scl:sce8391 WD repeat-containing protein; COGs: COG2319 FOG: WD40 repeat; SPTR: B8LXS9 G-protein beta WD-40 repeats containing protein, putative; PFAM: WD domain, G-beta repeat
YP_003508262.1	PFAM: periplasmic binding protein; SPTR: A6CRT2 ABC transporter (Substrate-binding protein); InterPro IPR002491; COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; KEGG: bha:BH3403 ABC transporter (substrate-binding protein); PFAM: Periplasmic binding protein
YP_003508263.1	SPTR: O34899 Cob(I)yrinic acid a,c-diamide adenosyltransferase; KEGG: mxa:MXAN_5941 putative ATP:cob(I)alamin adenosyltransferase; COGs: COG2096 conserved hypothetical protein; PFAM: cobalamin adenosyltransferase; TIGRFAM: ATP/cobalamin adenosyltransferase; PRIAM: Cob(I)yrinic acid a,c-diamide adenosyltransferase; InterPro IPR002779:IPR017858; PFAM: Cobalamin adenosyltransferase; TIGRFAM: ATP:cob(I)alamin adenosyltransferase
YP_003508264.1	PFAM: DNA polymerase beta domain protein region; SPTR: A0ZED2 Putative uncharacterized protein; InterPro IPR002934; COGs: COG1669 nucleotidyltransferase; KEGG: mmw:Mmwyl1_3031 DNA polymerase beta subunit; PFAM: Nucleotidyltransferase domain
YP_003508265.1	PFAM: protein of unknown function DUF86; SPTR: B7R2I8 Nucleotidyltransferase; InterPro IPR008201; COGs: COG2361 conserved hypothetical protein; KEGG: cak:Caul_0846 hypothetical protein; PFAM: Protein of unknown function DUF86
YP_003508266.1	PFAM: Peptidase M23; Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; InterPro IPR016047:IPR002482; KEGG: sus:Acid_3049 peptidase M23B; COGs: COG0739 Membrane protein related to metalloendopeptidase; SPTR: A0ZHN9 Putative uncharacterized protein; PFAM: LysM domain; Peptidase family M23
YP_003508267.1	TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; InterPro IPR002698; KEGG: afr:AFE_2140 5-formyltetrahydrofolate cyclo-ligase family protein; COGs: COG0212 5-formyltetrahydrofolate cyclo-ligase; SPTR: A0YX29 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase family; TIGRFAM: 5,10-methenyltetrahydrofolate synthetase
YP_003508268.1	COGs: COG2331 conserved hypothetical protein; KEGG: sus:Acid_4787 FmdB family regulatory protein
YP_003508269.1	PFAM: band 7 protein; SMART: band 7 protein; InterPro IPR000163:IPR001107; KEGG: nis:NIS_1543 hypothetical protein; COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; SPTR: Q12WR8 Membrane protease; PFAM: SPFH domain / Band 7 family
YP_003508270.1	PFAM: protein of unknown function DUF192; InterPro IPR003795; COGs: COG1430 conserved hypothetical protein; KEGG: nmu:Nmul_A2135 hypothetical protein; PFAM: Uncharacterized ACR, COG1430
YP_003508271.1	PFAM: glutamine cyclotransferase; SPTR: A2U382 Glutamine cyclotransferase; InterPro IPR007788; COGs: COG3823 Glutamine cyclotransferase; KEGG: sus:Acid_3566 glutamine cyclotransferase; PFAM: Glutamine cyclotransferase
YP_003508272.1	TIGRFAM: thymidylate kinase; PRIAM: dTMP kinase; PFAM: thymidylate kinase; InterPro IPR000062; KEGG: dds:Ddes_0128 dTMP kinase; COGs: COG0125 Thymidylate kinase; SPTR: Q5SHX3 Thymidylate kinase; PFAM: Thymidylate kinase; TIGRFAM: thymidylate kinase
YP_003508273.1	PFAM: protein of unknown function DUF34; SPTR: Q9RY41 UPF0135 protein DR_0110; InterPro IPR002678; COGs: COG0327 conserved hypothetical protein; KEGG: sat:SYN_01923 NIF3-related protein; PFAM: NIF3 (NGG1p interacting factor 3); TIGRFAM: conserved hypothetical protein TIGR00486
YP_003508274.1	TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; InterPro IPR000713:IPR004101:IPR013221:IPR005761; KEGG: ade:Adeh_3766 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; COGs: COG0769 UDP-N-acetylmuramyl tripeptide synthase; SPTR: Q9RXL3 UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase family, catalytic domain; Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetases
YP_003508275.1	KEGG: oca:OCAR_7053 rhodanese domain protein; COGs: COG0607 Rhodanese-related sulfurtransferase; SPTR: A4EUB8 Rhodanese domain protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; InterPro IPR001763; PFAM: Rhodanese-like domain
YP_003508277.1	PFAM: histone deacetylase superfamily; SPTR: A3RPG5 Deacetylase; InterPro IPR000286; COGs: COG0123 Deacetylase including yeast histone deacetylase and acetoin utilization protein; KEGG: rme:Rmet_1201 histone deacetylase superfamily; PFAM: Histone deacetylase domain
YP_003508278.1	TIGRFAM: pyridoxal kinase; PFAM: Phosphomethylpyrimidine kinase type-1; InterPro IPR013749:IPR004625; KEGG: azc:AZC_1064 pyridoxamine kinase; COGs: COG2240 Pyridoxal/pyridoxine/pyridoxamine kinase; SPTR: Q1J237 Pyridoxamine kinase; PFAM: Phosphomethylpyrimidine kinase; TIGRFAM: pyridoxal kinase
YP_003508279.1	KEGG: hypothetical protein; SPTR: A4RKW5 Putative uncharacterized protein; PFAM: Prokaryotic phospholipase A2
YP_003508280.1	KEGG: tgr:Tgr7_2430 conserved hypothetical protein, putative exported protein; SPTR: A0YWW5 Putative uncharacterized protein
YP_003508281.1	KEGG: tgr:Tgr7_2429 hypothetical protein; SPTR: A0YWW6 Putative uncharacterized protein
YP_003508282.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; InterPro IPR001761:IPR000843; KEGG: vei:Veis_0525 periplasmic binding protein/LacI transcriptional regulator; COGs: COG1609 Transcriptional regulators; SPTR: A7CQD4 Periplasmic binding protein/LacI transcriptional regulator; PFAM: Bacterial regulatory proteins, lacI family; Periplasmic binding proteins and sugar binding domain of the LacI family
YP_003508283.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; SPTR: A3Y915 ABC sugar transporter, periplasmic sugar binding subunit; InterPro IPR001761; COGs: COG1879 ABC-type sugar transport system periplasmic component; KEGG: vei:Veis_0540 periplasmic binding protein/LacI transcriptional regulator; PFAM: Periplasmic binding proteins and sugar binding domain of the LacI family
YP_003508284.1	PFAM: inner-membrane translocator; SPTR: A3TIS7 Putative permease abc transporter protein; InterPro IPR001851; COGs: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems permease components; KEGG: bxe:Bxe_B0893 ABC sugar transporter, inner membrane subunit; PFAM: Branched-chain amino acid transport system / permease component
YP_003508285.1	PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593; KEGG: pna:Pnap_2605 ABC transporter related; COGs: COG1129 ABC-type sugar transport system ATPase component; SPTR: A3Y917 Sugar ABC transporter, ATP binding protein; PFAM: ABC transporter
YP_003508286.1	TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; InterPro IPR000577:IPR006000; KEGG: bur:Bcep18194_A5936 carbohydrate kinase, FGGY; COGs: COG1070 Sugar (pentulose and hexulose) kinase; SPTR: A8KKR1 Carbohydrate kinase, FGGY family; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: D-xylulose kinase
YP_003508287.1	SPTR: A7CZ61 Putative uncharacterized protein; COGs: COG3132 conserved hypothetical protein; KEGG: gsu:GSU0233 hypothetical protein; PFAM: Protein of unknown function, DUF480
YP_003508288.1	SPTR: Q9RWM1 Probable molybdopterin-guanine dinucleotide biosynthesis protein A; COGs: COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: bca:BCE_4908 molybdopterin-guanine dinucleotide biosynthesis protein A, putative
YP_003508289.1	TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; InterPro IPR006059:IPR005673; KEGG: aba:Acid345_2975 ABC transporter, periplasmic phosphate binding protein; COGs: COG0226 ABC-type phosphate transport system periplasmic component; SPTR: A0RV36 ABC-type phosphate transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: phosphate ABC transporter, phosphate-binding protein
YP_003508290.1	COGs: COG0573 ABC-type phosphate transport system permease component; InterPro IPR000515:IPR011864; KEGG: aba:Acid345_2974 phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A3INW3 Phosphate ABC transporter, permease protein PstC; TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease protein PstC
YP_003508291.1	TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; InterPro IPR000515:IPR005672; KEGG: gur:Gura_2560 phosphate ABC transporter, inner membrane subunit PstA; COGs: COG0581 ABC-type phosphate transport system permease component; SPTR: A0ZB64 Phosphate transport system permease protein 2; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease protein PstA
YP_003508292.1	TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593:IPR017871:IPR005670; KEGG: gme:Gmet_2704 phosphate ABC transporter permease; COGs: COG1117 ABC-type phosphate transport system ATPase component; SPTR: Q1J0N0 Phosphate import ATP-binding protein pstB; PFAM: ABC transporter; TIGRFAM: phosphate ABC transporter, ATP-binding protein
YP_003508293.1	TIGRFAM: peptidyl-tRNA hydrolase; PRIAM: Aminoacyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase; InterPro IPR001328; KEGG: dvl:Dvul_1560 peptidyl-tRNA hydrolase; COGs: COG0193 Peptidyl-tRNA hydrolase; SPTR: Q5SHZ2 Peptidyl-tRNA hydrolase; PFAM: Peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase
YP_003508294.1	TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal protein L25; InterPro IPR001021; KEGG: oan:Oant_1631 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; COGs: COG1825 Ribosomal protein L25 (general stress protein Ctc); SPTR: Q5SHZ1 50S ribosomal protein L25; PFAM: Ribosomal L25p family; TIGRFAM: ribosomal protein L25, Ctc-form
YP_003508295.1	TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; InterPro IPR000424:IPR011344; KEGG: afw:Anae109_3926 single-strand binding protein; COGs: COG0629 Single-stranded DNA-binding protein; SPTR: O85824 Single-stranded DNA-binding protein; PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb)
YP_003508297.1	TIGRFAM: malate synthase A; PRIAM: Malate synthase; PFAM: malate synthase; InterPro IPR001465:IPR006252; KEGG: bvi:Bcep1808_1958 malate synthase; COGs: COG2225 Malate synthase; SPTR: A2VX98 Malate synthase; PFAM: Malate synthase; TIGRFAM: malate synthase A
YP_003508298.1	PFAM: Transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR; InterPro IPR014757:IPR005471; KEGG: oca:OCAR_6563 acetate operon repressor; COGs: COG1414 Transcriptional regulator; SPTR: A4F078 Transcriptional regulator, IclR family protein; PFAM: Bacterial transcriptional regulator; IclR helix-turn-helix domain
YP_003508299.1	PFAM: S-adenosylmethionine decarboxylase related; SPTR: O28663 S-adenosylmethionine decarboxylase proenzyme; InterPro IPR003826; COGs: COG1586 S-adenosylmethionine decarboxylase; KEGG: sfu:Sfum_0720 S-adenosylmethionine decarboxylase related; PFAM: S-adenosylmethionine decarboxylase; TIGRFAM: S-adenosylmethionine decarboxylase proenzyme, Bacillus form
YP_003508300.1	KEGG: aba:Acid345_1383 putative integral membrane protein; SPTR: A3TMG1 Putative integral membrane protein
YP_003508301.1	PRIAM: Succinate dehydrogenase (ubiquinone); PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; HI0933 family protein; InterProIPR013027:IPR004112:IPR006076:IPR004792:IPR 003953; KEGG: aba:Acid345_1384 succinate dehydrogenase flavoprotein subunit; COGs: COG1053 Succinate dehydrogenase/fumarate reductase flavoprotein subunit; SPTR: A3TMG0 Succinate dehydrogenase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein C-terminal domain; Pyridine nucleotide-disulphide oxidoreductase
YP_003508302.1	InterPro IPR006058:IPR001041:IPR004489; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; COGs: COG0479 Succinate dehydrogenase/fumarate reductase Fe-S protein subunit; KEGG: aba:Acid345_1385 fumarate reductase iron-sulfur subunit; SPTR: A4KNR5 Hypothetical succinate dehydrogenase [iron-sulfur subunit] (Succinic dehydrogenase); TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein
YP_003508303.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A4U8T9 Sugar permease; InterPro IPR000515; COGs: COG1175 ABC-type sugar transport systems permease components; KEGG: scl:sce3058 sugar ABC transporter, permease protein; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003508304.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A8S3R4 Putative uncharacterized protein; InterPro IPR000515; COGs: COG0395 ABC-type sugar transport system permease component; KEGG: bcz:BCZK1636 sugar ABC transporter, permease; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003508305.1	PFAM: extracellular solute-binding protein family 1; SPTR: A3TIV4 Glycerol-3-phosphate ABC transporter substarate-binding protein; InterPro IPR006059; COGs: COG1653 ABC-type sugar transport system periplasmic component; KEGG: bcu:BCAH820_0625 putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein; PFAM: Bacterial extracellular solute-binding protein
YP_003508306.1	PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; InterPro IPR000524:IPR011711; KEGG: oca:OCAR_7363 transcriptional regulator, GntR family; COGs: COG1802 Transcriptional regulators; SPTR: A1HR75 Transcriptional regulator, GntR family; PFAM: Bacterial regulatory proteins, gntR family; FCD domain
YP_003508307.1	SPTR: A4LML9 Putative ABC transporter, substrate-binding protein; KEGG: bcs:BCAN_B1204 hypothetical protein; COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component
YP_003508308.1	PFAM: inner-membrane translocator; SPTR: A5XQW4 ABC transporter, permease protein; InterPro IPR001851; COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; KEGG: bmb:BruAb2_1110 branched-chain amino acid ABC transporter, permease protein; PFAM: Branched-chain amino acid transport system / permease component
YP_003508309.1	PFAM: ABC transporter related; inner-membrane translocator; SMART: AAA ATPase; InterPro IPR003439:IPR001851:IPR003593; KEGG: bcs:BCAN_B1206 inner-membrane translocator:ABC transporter; COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; SPTR: A2W679 Sulfate-transporting ATPase; PFAM: Branched-chain amino acid transport system / permease component; ABC transporter
YP_003508310.1	PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593:IPR017871; KEGG: bcs:BCAN_B1207 branched-chain amino acid transport ATP-binding protein LivF; COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; SPTR: A4TZB1 High-affinity branched-chain amino acid transport ATP-binding protein; PFAM: ABC transporter
YP_003508311.1	KEGG: nar:Saro_2802 hypothetical protein; SPTR: A3VAN5 Putative uncharacterized protein
YP_003508312.1	PFAM: short-chain dehydrogenase/reductase SDR; SPTR: A3LC76 DitB; InterPro IPR002347:IPR002198; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); KEGG: short-chain alcohol dehydrogenase; PFAM: short chain dehydrogenase
YP_003508313.1	PFAM: FAD linked oxidase domain protein; SPTR: Q5B7T1 Putative uncharacterized protein; InterPro IPR006094:IPR006093; COGs: COG0277 FAD/FMN-containing dehydrogenase; KEGG: hypothetical protein; PFAM: FAD binding domain
YP_003508314.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; InterPro IPR004360; KEGG: lactoylglutathione lyase; SPTR: A3VAN9 Putative uncharacterized protein; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
YP_003508315.1	TIGRFAM: histidinol dehydrogenase; PRIAM: Histidinol dehydrogenase; PFAM: histidinol dehydrogenase; InterPro IPR001692; KEGG: histidinol dehydrogenase ; K00013 histidinol dehydrogenase; COGs: COG0141 Histidinol dehydrogenase; SPTR: Q5WIU9 Histidinol dehydrogenase 1; PFAM: Histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase
YP_003508316.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; Male sterility domain; NAD-dependent epimerase/dehydratase; SPTR: A5KWJ5 Short-chain dehydrogenase/reductase SDR; InterProIPR002347:IPR002424:IPR002198:IPR013120:IPR 013968:IPR001509; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); KEGG: pol:Bpro_0358 short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase
YP_003508317.1	PRIAM: Biphenyl-2,3-diol 1,2-dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; InterPro IPR004360:IPR000568; KEGG: catechol 2,3-dioxygenase; SPTR: Q8GR45 Manganese-dependent 2,3-dihydroxybiphenyl 1,2-dioxygenase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: catechol 2,3 dioxygenase
YP_003508318.1	PFAM: cyclase family protein; SPTR: A4A9M0 Putative cyclase; InterPro IPR007325; COGs: COG1878 metal-dependent hydrolase; KEGG: dol:Dole_1641 cyclase family protein; PFAM: Putative cyclase
YP_003508319.1	InterPro IPR006992; PFAM: amidohydrolase 2; COGs: COG2159 metal-dependent hydrolase of the TIM-barrel fold; KEGG: bur:Bcep18194_A4912 amidohydrolase 2; SPTR: A5ABB5 Contig An08c0230, complete genome.; PFAM: Amidohydrolase
YP_003508320.1	PFAM: fumarylacetoacetate (FAA) hydrolase; SPTR: Q3INL8 Probable 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase 2; probable 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase 2; InterPro IPR002529; COGs: COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase (catechol pathway); KEGG: dal:Dalk_2440 fumarylacetoacetate (FAA) hydrolase; PFAM: Fumarylacetoacetate (FAA) hydrolase family
YP_003508321.1	PFAM: fumarylacetoacetate (FAA) hydrolase; SPTR: A3KJV1 Putative hydrolase; InterPro IPR002529; COGs: COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase (catechol pathway); KEGG: swi:Swit_2302 5-carboxymethyl-2-hydroxymuconate delta-isomerase; PFAM: Fumarylacetoacetate (FAA) hydrolase family
YP_003508322.1	PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; SPTR: A3VA59 Putative uncharacterized protein; InterPro IPR003042:IPR002938:IPR006076; COGs: COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductase; KEGG: monooxygenase; PFAM: FAD dependent oxidoreductase
YP_003508323.1	PFAM: SMP-30/Gluconolaconase/LRE domain protein; SPTR: A3VAM6 Putative uncharacterized protein; InterPro IPR013658; COGs: COG3386 Gluconolactonase; KEGG: bxe:Bxe_C0908 gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE-like region
YP_003508324.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; SPTR: A3JBQ7 Probable dehydrogenase; InterProIPR002347:IPR002424:IPR002198:IPR013968:IPR 001509; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); KEGG: short-chain alcohol dehydrogenase; PFAM: short chain dehydrogenase
YP_003508325.1	PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; short-chain dehydrogenase/reductase SDR; SPTR: A7CCE6 NAD-dependent epimerase/dehydratase; InterProIPR013120:IPR002225:IPR005913:IPR002198:IPR 001509; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; KEGG: bpt:Bpet4870 putative NDP-sugar oxidoreductase; PFAM: NAD dependent epimerase/dehydratase family
YP_003508326.1	TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; InterPro IPR004837:IPR004481; KEGG: tbd:Tbd_2520 K+-dependent Na+/Ca+ exchanger related-protein; COGs: COG0530 Ca2+/Na+ antiporter; SPTR: A0YPB5 Sodium-calcium exchanger; PFAM: Sodium/calcium exchanger protein; TIGRFAM: K+-dependent Na+/Ca+ exchanger related-protein
YP_003508327.1	PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; InterPro IPR000843:IPR001761; KEGG: aav:Aave_4199 transcriptional regulator, LacI family; COGs: COG1609 Transcriptional regulators; SPTR: A7CMJ6 Periplasmic binding protein/LacI transcriptional regulator; PFAM: Bacterial regulatory proteins, lacI family; Periplasmic binding proteins and sugar binding domain of the LacI family
YP_003508328.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; SPTR: A8S3G7 Putative uncharacterized protein; InterPro IPR004682; COGs: COG1638 TRAP-type C4-dicarboxylate transport system periplasmic component; KEGG: rsq:Rsph17025_3258 tripartite ATP-independent periplasmic transporter DctQ; PFAM: Bacterial extracellular solute-binding protein, family 7
YP_003508329.1	PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; SPTR: A8RQ16 Putative uncharacterized protein; InterPro IPR007387; COGs: COG3090 TRAP-type C4-dicarboxylate transport system small permease component; KEGG: rsq:Rsph17025_3259 hypothetical protein; PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component
YP_003508330.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; InterPro IPR010656:IPR004681; KEGG: rsq:Rsph17025_3260 hypothetical protein; COGs: COG1593 TRAP-type C4-dicarboxylate transport system large permease component; SPTR: A8RQ17 Putative uncharacterized protein; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit
YP_003508331.1	PFAM: short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; SPTR: A7B272 Putative uncharacterized protein; InterPro IPR002347:IPR002424:IPR002198:IPR001509; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); KEGG: 3-oxoacyl-(acyl-carrier-protein) reductase ; K00059 3-oxoacyl-; PFAM: short chain dehydrogenase
YP_003508332.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; SPTR: Q8Q0F1 Short chain dehydrogenase/reductase; InterProIPR002347:IPR002424:IPR002198:IPR013968:IPR 001509; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); KEGG: vei:Veis_0770 short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase
YP_003508333.1	PRIAM: Malate dehydrogenase; PFAM: Malate/L-lactate dehydrogenase; InterPro IPR003767; KEGG: malate/L-lactate dehydrogenase (EC:1.1.1.-); K00100; COGs: COG2055 Malate/L-lactate dehydrogenase; SPTR: A1HMI4 Malate dehydrogenase; PFAM: Malate/L-lactate dehydrogenase
YP_003508334.1	TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; PFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; InterPro IPR004506; KEGG: gme:Gmet_0873 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; COGs: COG0482 tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase contains the PP-loop ATPase domain; SPTR: Q5SLN5 tRNA-specific 2-thiouridylase mnmA; PFAM: tRNA methyl transferase; TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
YP_003508336.1	PFAM: EAL domain protein; GGDEF domain containing protein; GAF domain protein; SMART: EAL domain protein; GGDEF domain containing protein; InterPro IPR001633:IPR000160:IPR003018; KEGG: tgr:Tgr7_0805 diguanylate cyclase/phosphodiesterase with GAF sensor; COGs: COG2200 FOG: EAL domain; SPTR: A4U5J6 Putative uncharacterized protein; PFAM: EAL domain; GGDEF domain; GAF domain
YP_003508337.1	PFAM: diacylglycerol kinase catalytic region; SMART: diacylglycerol kinase catalytic region; InterPro IPR001206:IPR005218; KEGG: lch:Lcho_3630 diacylglycerol kinase catalytic region; COGs: COG1597 Sphingosine kinase; SPTR: A7LXM3 Putative uncharacterized protein; PFAM: Diacylglycerol kinase catalytic domain; TIGRFAM: conserved protein of unknown function cotranscribed with Bmr (bmrU)
YP_003508338.1	PFAM: GCN5-related N-acetyltransferase; InterPro IPR000182; KEGG: bov:BOV_1021 acetyltransferase; SPTR: A0P3F8 Putative uncharacterized protein; PFAM: Acetyltransferase (GNAT) family
YP_003508339.1	KEGG: tmz:Tmz1t_1090 hypothetical protein; SPTR: Q9V1L7 Putative uncharacterized protein
YP_003508340.1	PFAM: Mandelate racemase/muconate lactonizing protein; SPTR: A6ZIK7 Chloromuconate cycloisomerase; InterPro IPR013342; COGs: COG4948 L-alanine-DL-glutamate epimerase; KEGG: sun:SUN_1179 chloromuconate cycloisomerase; PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
YP_003508341.1	SPTR: A0YWG1 Putative uncharacterized protein
YP_003508342.1	TIGRFAM: orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase; InterPro IPR000836:IPR006273; KEGG: sus:Acid_4993 orotate phosphoribosyltransferase; COGs: COG0461 Orotate phosphoribosyltransferase; SPTR: P61499 Orotate phosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: orotate phosphoribosyltransferase, Thermus family; orotate phosphoribosyltransferase
YP_003508343.1	KEGG: vha:VIBHAR_00792 hypothetical protein; SPTR: Q0W6H3 Putative uncharacterized protein
YP_003508344.1	PRIAM: Glycerol-3-phosphate dehydrogenase (NAD(P)(+)); PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; NADP oxidoreductase coenzyme F420-dependent; Ketopantoate reductase ApbA/PanE domain protein; InterProIPR006168:IPR011128:IPR004455:IPR013332:IPR 006109; KEGG: ppw:PputW619_3493 glycerol-3-phosphate dehydrogenase (NAD(P)(+)); COGs: COG0240 Glycerol-3-phosphate dehydrogenase; SPTR: Q5SHJ0 Glycerol-3-phosphate dehydrogenase [NAD(P)+]; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
YP_003508345.1	PRIAM: Type II site-specific deoxyribonuclease; PFAM: helix-turn-helix domain protein; InterPro IPR001387; SPTR: P23657 Type-2 restriction enzyme PvuII; KEGG: sek:SSPA3987 subunit R of type I restriction-modification system; SMART: helix-turn-helix domain protein; PFAM: Helix-turn-helix; Restriction endonuclease PvuII
YP_003508346.1	COGs: COG0863 DNA modification methylase; InterPro IPR001091:IPR002295:IPR002941; KEGG: vei:Veis_3519 DNA methylase N-4/N-6 domain protein; SPTR: P11409 Modification methylase PvuII; PFAM: DNA methylase N-4/N-6 domain protein; PFAM: DNA methylase
YP_003508347.1	TIGRFAM: phosphoenolpyruvate synthase; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; PEP-utilizing protein; InterPro IPR008279:IPR002192:IPR000121:IPR006319; KEGG: aeh:Mlg_1890 phosphoenolpyruvate synthase; COGs: COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase; SPTR: O83026 Phosphoenolpyruvate synthase; PFAM: PEP-utilising enzyme, mobile domain; Pyruvate phosphate dikinase, PEP/pyruvate binding domain; PEP-utilising enzyme, TIM barrel domain; TIGRFAM: phosphoenolpyruvate synthase
YP_003508348.1	PFAM: protein of unknown function DUF299; SPTR: Q1J0R0 Putative phosphotransferase Dgeo_0622; InterPro IPR005177; COGs: COG1806 conserved hypothetical protein; KEGG: pag:PLES_35601 hypothetical protein; PFAM: Domain of unknown function (DUF299)
YP_003508349.1	TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase class Ic; InterPro IPR000924:IPR001412:IPR004527; KEGG: csa:Csal_1211 glutamyl-tRNA synthetase; COGs: COG0008 Glutamyl- and glutaminyl-tRNA synthetase; SPTR: P27000 Glutamyl-tRNA synthetase; PFAM: tRNA synthetases class I (E and Q), catalytic domain; TIGRFAM: glutamyl-tRNA synthetase, bacterial family
YP_003508350.1	PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593:IPR017871; KEGG: afr:AFE_3026 ABC transporter, ATP-binding protein; COGs: COG1137 ABC-type (unclassified) transport system ATPase component; SPTR: P24693 Lipopolysaccharide export system ATP-binding protein lptB; PFAM: ABC transporter
YP_003508351.1	SPTR: Q05070 Uncharacterized protein alr4393; COGs: COG4372 Uncharacterized protein with the myosin-like domain; KEGG: similar to Desmoplakin (DP) (250/210 kDa paraneoplastic pemphigus antigen) ; K10381 desmoplakin
YP_003508352.1	PFAM: PDZ/DHR/GLGF domain protein; peptidase S1 and S6 chymotrypsin/Hap; SMART: PDZ/DHR/GLGF domain protein; InterPro IPR001940:IPR001254:IPR001478; KEGG: degPch1; serine protease DO-like protein; COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; SPTR: A9T3R3 Predicted protein; PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF)
YP_003508353.1	PFAM: deoxynucleoside kinase; SPTR: A4GIZ4 Putative deoxynucleoside kinase; InterPro IPR002624; COGs: COG1428 Deoxynucleoside kinase; KEGG: mxa:MXAN_2054 deoxynucleoside kinase family protein; PFAM: Deoxynucleoside kinase
YP_003508354.1	PFAM: deoxynucleoside kinase; SPTR: A6ECF7 Deoxynucleoside kinase subfamily, putative; KEGG: mxa:MXAN_3331 deoxynucleoside kinase family protein; COGs: COG1428 Deoxynucleoside kinase; InterPro IPR002624; PFAM: Dephospho-CoA kinase; Deoxynucleoside kinase
YP_003508355.1	TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593:IPR017871:IPR004602; KEGG: gsu:GSU3325 excinuclease ABC, A subunit; COGs: COG0178 Excinuclease ATPase subunit; SPTR: Q56242 UvrABC system protein A; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit
YP_003508356.1	KEGG: tbd:Tbd_1936 hypothetical protein; SPTR: A4BKL0 Putative uncharacterized protein (Fragment)
YP_003508357.1	TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; SMART: Hedgehog/intein hint domain protein; InterProIPR006142:IPR007693:IPR007694:IPR003587:IPR 003586:IPR006141:IPR001553:IPR004042:IPR007692; KEGG: aeh:Mlg_0587 XRE family transcriptional regulator; COGs: COG0305 Replicative DNA helicase; SPTR: O30477 Replicative DNA helicase; PFAM: DnaB-like helicase C terminal domain; DnaB-like helicase N terminal domain; TIGRFAM: intein N-terminal splicing region; replicative DNA helicase; intein C-terminal splicing region
YP_003508358.1	PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593:IPR017871; KEGG: mes:Meso_3147 ABC transporter related; COGs: COG1126 ABC-type polar amino acid transport system ATPase component; SPTR: O29577 Glutamine ABC transporter, ATP-binding protein (GlnQ); PFAM: ABC transporter
YP_003508359.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; InterPro IPR000515:IPR010065; KEGG: mes:Meso_3148 polar amino acid ABC transporter, inner membrane subunit; COGs: COG0765 ABC-type amino acid transport system permease component; SPTR: A7BAZ4 Putative uncharacterized protein; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family
YP_003508360.1	TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; InterPro IPR000456; KEGG: dde:Dde_2230 50S ribosomal protein L17; COGs: COG0203 Ribosomal protein L17; SPTR: Q9Z9H5 50S ribosomal protein L17; PFAM: Ribosomal protein L17; TIGRFAM: ribosomal protein L17
YP_003508361.1	TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase insert; RNA polymerase alpha subunit domain protein; RNA polymerase dimerisation; SMART: RNA polymerase RpoA/D/Rpb3-type; InterProIPR011260:IPR011262:IPR011261:IPR011263:IPR 011773; KEGG: cak:Caul_1638 DNA-directed RNA polymerase subunit alpha; COGs: COG0202 DNA-directed RNA polymerase alpha subunit/40 kD subunit; SPTR: Q9KWU8 DNA-directed RNA polymerase subunit alpha; PFAM: Bacterial RNA polymerase, alpha chain C terminal domain; RNA polymerase Rpb3/RpoA insert domain; TIGRFAM: DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type
YP_003508362.1	TIGRFAM: ribosomal protein S4; PFAM: RNA-binding S4 domain protein; ribosomal protein S4; SMART: RNA-binding S4 domain protein; InterPro IPR001912:IPR002942:IPR005709; KEGG: nis:NIS_0248 30S ribosomal protein S4; COGs: COG0522 Ribosomal protein S4 and related protein; SPTR: Q1IX98 30S ribosomal protein S4; PFAM: S4 domain; Ribosomal protein S4/S9 N-terminal domain; TIGRFAM: ribosomal protein S4, bacterial/organelle type
YP_003508363.1	PFAM: ribosomal protein S11; SPTR: P80376 30S ribosomal protein S11; InterPro IPR001971; COGs: COG0100 Ribosomal protein S11; KEGG: dal:Dalk_1891 ribosomal protein S11; PFAM: Ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11
YP_003508364.1	PFAM: ribosomal protein S13; SPTR: P80377 30S ribosomal protein S13; InterPro IPR001892; COGs: COG0099 Ribosomal protein S13; KEGG: ppd:Ppro_0703 30S ribosomal protein S13; PFAM: Ribosomal protein S13/S18; TIGRFAM: 30S ribosomal protein S13
YP_003508365.1	TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; InterPro IPR000473:IPR000923; KEGG: rpmJ; 50S ribosomal protein L36; SPTR: P80256 50S ribosomal protein L36; PFAM: Ribosomal protein L36; TIGRFAM: ribosomal protein L36, bacterial type
YP_003508366.1	PFAM: S1 IF1 family protein; SPTR: Q8KLI6 Translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; COGs: COG0361 Translation initiation factor 1 (IF-1); InterPro IPR006196:IPR004368; KEGG: smt:Smal_1927 translation initiation factor IF-1; PFAM: Translation initiation factor 1A / IF-1; TIGRFAM: translation initiation factor IF-1
YP_003508367.1	TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; InterPro IPR001714:IPR000994:IPR002467; KEGG: gme:Gmet_0648 methionine aminopeptidase, type I; COGs: COG0024 Methionine aminopeptidase; SPTR: A6NXF2 Methionine aminopeptidase; PFAM: metallopeptidase family M24; TIGRFAM: methionine aminopeptidase, type I
YP_003508368.1	TIGRFAM: adenylate kinase; PFAM: adenylate kinase; InterPro IPR000850:IPR006259; KEGG: sit:TM1040_0276 adenylate kinase; COGs: COG0563 Adenylate kinase and related kinase; SPTR: Q5SHQ9 Adenylate kinase; PFAM: Adenylate kinase; TIGRFAM: adenylate kinases
YP_003508369.1	TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; InterPro IPR002208; KEGG: sfu:Sfum_1575 preprotein translocase subunit SecY; COGs: COG0201 Preprotein translocase subunit SecY; SPTR: A3EVQ1 Preprotein translocase secY subunit; PFAM: eubacterial secY protein; TIGRFAM: preprotein translocase, SecY subunit; ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes)
YP_003508370.1	TIGRFAM: ribosomal protein L15; PFAM: ribosomal protein L15; InterPro IPR001196:IPR005749; KEGG: gsu:GSU2838 50S ribosomal protein L15; COGs: COG0200 Ribosomal protein L15; SPTR: P74910 50S ribosomal protein L15; PFAM: Ribosomal protein L15 amino terminal region; TIGRFAM: ribosomal protein L15, bacterial/organelle
YP_003508371.1	TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30; InterPro IPR000517:IPR005996; KEGG: sil:SPO0503 50S ribosomal protein L30; SPTR: P74909 50S ribosomal protein L30; PFAM: Ribosomal protein L30p/L7e; TIGRFAM: ribosomal protein L30, bacterial/organelle
YP_003508372.1	TIGRFAM: ribosomal protein S5; PFAM: ribosomal protein S5 domain protein; Ribosomal protein S5; InterPro IPR013810:IPR005324:IPR005712; KEGG: bha:BH0151 30S ribosomal protein S5; COGs: COG0098 Ribosomal protein S5; SPTR: P27152 30S ribosomal protein S5; PFAM: Ribosomal protein S5, C-terminal domain; Ribosomal protein S5, N-terminal domain; TIGRFAM: ribosomal protein S5, bacterial/organelle type
YP_003508373.1	TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; InterPro IPR005484:IPR004389; KEGG: azc:AZC_2538 ribosomal protein L18; COGs: COG0256 Ribosomal protein L18; SPTR: P80320 50S ribosomal protein L18; PFAM: Ribosomal L18p/L5e family; TIGRFAM: ribosomal protein L18, bacterial type
YP_003508374.1	PFAM: ribosomal protein L6; SPTR: P24316 50S ribosomal protein L6; InterPro IPR000702; COGs: COG0097 Ribosomal protein L6P/L9E; KEGG: rpe:RPE_3571 50S ribosomal protein L6; PFAM: Ribosomal protein L6; TIGRFAM: ribosomal protein L6, bacterial type
YP_003508375.1	PFAM: ribosomal protein S8; SPTR: P24319 30S ribosomal protein S8; InterPro IPR000630; COGs: COG0096 Ribosomal protein S8; KEGG: bcu:BCAH820_0136 ribosomal protein S8; PFAM: Ribosomal protein S8
YP_003508376.1	PFAM: ribosomal protein S14; SPTR: Q9RSL5 30S ribosomal protein S14; InterPro IPR001209; COGs: COG0199 Ribosomal protein S14; KEGG: bsu:BSU08880 30S ribosomal protein S14; PFAM: Ribosomal protein S14p/S29e
YP_003508377.1	COGs: COG0094 Ribosomal protein L5; InterPro IPR002132; KEGG: hha:Hhal_0846 50S ribosomal protein L5; SPTR: P24315 50S ribosomal protein L5; PFAM: ribosomal protein L5; PFAM: ribosomal L5P family C-terminus; Ribosomal protein L5
YP_003508378.1	TIGRFAM: ribosomal protein L24; SPTR: P60559 50S ribosomal protein L24; InterPro IPR003256; COGs: COG0198 Ribosomal protein L24; KEGG: pca:Pcar_0712 ribosomal protein L24; TIGRFAM: ribosomal protein L24, bacterial/organelle
YP_003508379.1	TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; InterPro IPR000218:IPR005745; KEGG: jan:Jann_0601 50S ribosomal protein L14; COGs: COG0093 Ribosomal protein L14; SPTR: Q5SHP8 50S ribosomal protein L14; PFAM: Ribosomal protein L14p/L23e; TIGRFAM: ribosomal protein L14, bacterial/organelle
YP_003508380.1	PFAM: ribosomal protein S17; SPTR: P24321 30S ribosomal protein S17; InterPro IPR000266; COGs: COG0186 Ribosomal protein S17; KEGG: eli:ELI_08145 ribosomal protein S17; PFAM: Ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17
YP_003508381.1	TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; InterPro IPR001854; KEGG: gbe:GbCGDNIH1_0562 LSU ribosomal protein L29P; SPTR: Q9LCY4 50S ribosomal protein L29; PFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29
YP_003508382.1	TIGRFAM: ribosomal protein L16; PFAM: ribosomal protein L16; InterPro IPR000114; KEGG: bsu:BSU01230 50S ribosomal protein L16; COGs: COG0197 Ribosomal protein L16/L10E; SPTR: P60489 50S ribosomal protein L16; PFAM: Ribosomal protein L16p/L10e; TIGRFAM: ribosomal protein L16, bacterial/organelle
YP_003508383.1	TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; KH type 2 domain protein; Ribosomal protein S3 domain; SMART: KH domain protein; InterProIPR004044:IPR001351:IPR008282:IPR004087:IPR 004088:IPR005704; KEGG: tdn:Suden_0292 30S ribosomal protein S3; COGs: COG0092 Ribosomal protein S3; SPTR: P80372 30S ribosomal protein S3; PFAM: Ribosomal protein S3, C-terminal domain; KH domain; Ribosomal protein S3, N-terminal domain; TIGRFAM: ribosomal protein S3, bacterial type
YP_003508384.1	TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17; InterPro IPR001063:IPR005727; KEGG: sat:SYN_00990 50S ribosomal protein L22P; COGs: COG0091 Ribosomal protein L22; SPTR: P48286 50S ribosomal protein L22; PFAM: Ribosomal protein L22p/L17e; TIGRFAM: ribosomal protein L22, bacterial type
YP_003508385.1	TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; InterPro IPR002222:IPR005732; KEGG: rps19; 30S ribosomal protein S19; COGs: COG0185 Ribosomal protein S19; SPTR: P80381 30S ribosomal protein S19; PFAM: Ribosomal protein S19; TIGRFAM: ribosomal protein S19, bacterial/organelle
YP_003508386.1	TIGRFAM: ribosomal protein L2; PFAM: ribosomal protein L2; InterPro IPR002171:IPR005880; KEGG: sus:Acid_5115 50S ribosomal protein L2; COGs: COG0090 Ribosomal protein L2; SPTR: P60405 50S ribosomal protein L2; PFAM: Ribosomal Proteins L2, C-terminal domain; Ribosomal Proteins L2, RNA binding domain; TIGRFAM: ribosomal protein L2, bacterial/organellar
YP_003508387.1	PFAM: Ribosomal protein L25/L23; SPTR: Q9RA57 50S ribosomal protein L23; InterPro IPR013025; COGs: COG0089 Ribosomal protein L23; KEGG: bha:BH0136 50S ribosomal protein L23; PFAM: Ribosomal protein L23
YP_003508388.1	PFAM: ribosomal protein L4/L1e; SPTR: Q72I05 50S ribosomal protein L4; InterPro IPR002136; COGs: COG0088 Ribosomal protein L4; KEGG: dol:Dole_0709 ribosomal protein L4/L1e; PFAM: Ribosomal protein L4/L1 family
YP_003508389.1	PFAM: ribosomal protein L3; SPTR: P52860 50S ribosomal protein L3; InterPro IPR000597; COGs: COG0087 Ribosomal protein L3; KEGG: dvm:DvMF_0079 ribosomal protein L3; PFAM: Ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3, bacterial
YP_003508390.1	TIGRFAM: ribosomal protein S10; PFAM: ribosomal protein S10; InterPro IPR001848:IPR005731; KEGG: bha:BH0133 30S ribosomal protein S10; COGs: COG0051 Ribosomal protein S10; SPTR: P80375 30S ribosomal protein S10; PFAM: Ribosomal protein S10p/S20e; TIGRFAM: ribosomal protein S10, bacterial/organelle
YP_003508391.1	TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain protein; elongation factor Tu domain 2 protein; InterProIPR000795:IPR004160:IPR004161:IPR005225:IPR 004541; KEGG: ngk:NGK_2431 putative translation elongation factor Tu; COGs: COG0050 GTPase - translation elongation factors; SPTR: Q01698 Elongation factor Tu; PFAM: Elongation factor Tu GTP binding domain; Elongation factor Tu C-terminal domain; Elongation factor Tu domain 2; TIGRFAM: small GTP-binding protein domain; translation elongation factor TU
YP_003508392.1	TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; elongation factor G domain IV; SPTR: P13551 Elongation factor G; KEGG: bha:BH0131 elongation factor G; COGs: COG0480 Translation elongation factors (GTPase); InterProIPR000795:IPR000640:IPR004161:IPR005517:IPR 005225:IPR004540; PFAM: Elongation factor G C-terminus; Elongation factor Tu domain 2; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain
YP_003508393.1	TIGRFAM: ribosomal protein S7; PFAM: ribosomal protein S7; InterPro IPR000235:IPR005717; KEGG: mgm:Mmc1_0843 30S ribosomal protein S7; COGs: COG0049 Ribosomal protein S7; SPTR: P17291 30S ribosomal protein S7; PFAM: Ribosomal protein S7p/S5e; TIGRFAM: ribosomal protein S7, bacterial/organelle
YP_003508394.1	TIGRFAM: ribosomal protein S12; PFAM: ribosomal protein S12/S23; InterPro IPR005679:IPR006032; KEGG: pla:Plav_2731 30S ribosomal protein S12; COGs: COG0048 Ribosomal protein S12; SPTR: P17293 30S ribosomal protein S12; PFAM: Ribosomal protein S12; TIGRFAM: ribosomal protein S12, bacterial/organelle
YP_003508395.1	PFAM: electron transport protein SCO1/SenC; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: A3RS91 Putative uncharacterized protein; InterPro IPR000866:IPR003782; COGs: COG1999 Uncharacterized protein SCO1/SenC/PrrC involved in biogenesis of respiratory and photosynthetic systems; KEGG: bbr:BB4821 SCO1/SenC family protein; PFAM: SCO1/SenC
YP_003508397.1	TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; InterPro IPR004518:IPR011551; KEGG: bcb:BCB4264_A0061 tetrapyrrole methylase family protein/MazG family protein; COGs: COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain; SPTR: A6C1Y3 MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase domain; TIGRFAM: MazG family protein
YP_003508398.1	PFAM: NUDIX hydrolase; InterPro IPR000086; KEGG: jan:Jann_0080 NUDIX hydrolase; SPTR: A0NYQ3 MutT/nudix family protein; PFAM: NUDIX domain
YP_003508399.1	PFAM: PaaX domain protein domain; PaaX domain protein; SPTR: A6CP16 Repressor in the phenylacetic acid catabolism; InterPro IPR012906:IPR013225; COGs: COG3327 Phenylacetic acid-responsive transcriptional repressor; KEGG: bha:BH0194 repressor in the phenylacetic acid catabolic pathway; PFAM: PaaX-like protein C-terminal domain; PaaX-like protein
YP_003508400.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; InterPro IPR002528; KEGG: asa:ASA_1262 MATE efflux family protein; COGs: COG0534 Na+-driven multidrug efflux pump; SPTR: A8RUW6 Putative uncharacterized protein; PFAM: MatE; TIGRFAM: putative efflux protein, MATE family
YP_003508401.1	COGs: COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; InterPro IPR005814; KEGG: mrd:Mrad2831_0848 aminotransferase class-III; SPTR: A4TZY3 Aminotransferase class-III; PFAM: aminotransferase class-III; PFAM: Aminotransferase class-III
YP_003508402.1	TIGRFAM: FolC bifunctional protein; PRIAM: Tetrahydrofolate synthase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; InterPro IPR004101:IPR013221:IPR001645; KEGG: sfu:Sfum_1671 FolC bifunctional protein; COGs: COG0285 Folylpolyglutamate synthase; SPTR: A1HP48 FolC bifunctional protein; PFAM: Mur ligase middle domain; Mur ligase family, glutamate ligase domain; TIGRFAM: folylpolyglutamate synthase/dihydrofolate synthase
YP_003508404.1	PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; InterPro IPR002035; KEGG: azo:azo2864 hypothetical protein; SPTR: A2SQ24 von Willebrand factor, type A; PFAM: von Willebrand factor type A domain
YP_003508405.1	SPTR: A7CWI5 2-nitropropane dioxygenase, NPD; COGs: COG2070 Dioxygenase related to 2-nitropropane dioxygenase; KEGG: bba:Bd1705 putative 2-nitropropane dioxygenase
YP_003508406.1	PFAM: Uracil-DNA glycosylase superfamily; SPTR: A6G3R2 Uracil-DNA glycosylase superfamily protein; InterPro IPR005122; COGs: COG1573 Uracil-DNA glycosylase; KEGG: ade:Adeh_3631 uracil-DNA glycosylase superfamily protein; PFAM: Uracil DNA glycosylase superfamily; TIGRFAM: uracil-DNA glycosylase, family 4
YP_003508407.1	PFAM: major intrinsic protein; SPTR: O22588 Probable aquaporin TIP3-2; InterPro IPR000425; COGs: COG0580 Glycerol uptake facilitator and related permease (Major Intrinsic Protein Family); KEGG: BETA-TIP; BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN); water channel ; K09873 aquaporin TIP; PFAM: Major intrinsic protein; TIGRFAM: MIP family channel proteins
YP_003508408.1	PFAM: HD domain
YP_003508409.1	TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Aldehyde Dehydrogenase; InterPro IPR015590:IPR016160:IPR005932; KEGG: bsu:BSU03210 1-pyrroline-5-carboxylate dehydrogenase; COGs: COG1012 NAD-dependent aldehyde dehydrogenase; SPTR: A1HRL3 Putative delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Aldehyde dehydrogenase family; TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase, group 2, putative
YP_003508410.1	PFAM: Proline dehydrogenase; SPTR: Q8RMG1 Proline dehydrogenase 1; InterPro IPR002872; COGs: COG0506 Proline dehydrogenase; KEGG: bsu:BSU32850 hypothetical protein; PFAM: Proline dehydrogenase
YP_003508411.1	PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; InterPro IPR000485:IPR000524:IPR011711; KEGG: dac:Daci_3784 GntR family transcriptional regulator; COGs: COG1802 Transcriptional regulators; SPTR: A1HR75 Transcriptional regulator, GntR family; PFAM: Bacterial regulatory proteins, gntR family; FCD domain
YP_003508412.1	TIGRFAM: S-adenosylmethionine synthetase; PRIAM: Methionine adenosyltransferase; PFAM: S-adenosylmethionine synthetase; InterPro IPR002133; KEGG: bha:BH3300 S-adenosylmethionine synthetase; COGs: COG0192 S-adenosylmethionine synthetase; SPTR: Q5SHT8 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase, C-terminal domain; S-adenosylmethionine synthetase, central domain; S-adenosylmethionine synthetase, N-terminal domain; TIGRFAM: S-adenosylmethionine synthetase
YP_003508413.1	TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; GAF domain protein; SMART: metal-dependent phosphohydrolase HD region; GAF domain protein; InterPro IPR006674:IPR003018:IPR003607:IPR006675; KEGG: pca:Pcar_2753 hypothetical protein; COGs: COG2206 HD-GYP domain; SPTR: A4BGC8 Response regulator, putative; PFAM: GAF domain; HD domain; TIGRFAM: uncharacterized domain HDIG
YP_003508414.1	SPTR: A1HQ28 Putative uncharacterized protein
YP_003508415.1	PFAM: 5'-Nucleotidase domain protein; metallophosphoesterase; SPTR: A0YNH1 5'-nucleotidase; InterPro IPR006179:IPR004843:IPR008334:IPR006146; COGs: COG0737 5'-nucleotidase/2' 3'-cyclic phosphodiesterase and related esterase; KEGG: rec:RHECIAT_CH0003809 probable 5'-nucleotidase protein; PFAM: Calcineurin-like phosphoesterase; 5'-nucleotidase, C-terminal domain
YP_003508416.1	SPTR: A3I047 Putative uncharacterized protein; COGs: COG2133 Glucose/sorbosone dehydrogenase; KEGG: sus:Acid_2463 glucose/sorbosone dehydrogenase-like protein
YP_003508418.1	TIGRFAM: glutamine synthetase, type I; PRIAM: Glutamate--ammonia ligase; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; InterPro IPR008146:IPR008147:IPR010916:IPR004809; KEGG: bsu:BSU17460 glutamine synthetase; COGs: COG0174 Glutamine synthetase; SPTR: A3I5K6 Glutamine synthetase; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain; TIGRFAM: glutamine synthetase, type I
YP_003508419.1	PFAM: Extracellular ligand-binding receptor; SPTR: A2W5B2 ABC-type branched-chain amino acid transport systems, periplasmic component; InterPro IPR000709:IPR001828; COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; KEGG: bch:Bcen2424_6393 extracellular ligand-binding receptor; PFAM: Receptor family ligand binding region
YP_003508421.1	PFAM: inner-membrane translocator; SPTR: A3RRQ9 LivH; InterPro IPR001851; COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; KEGG: bxe:Bxe_A0822 branched chain amino acid ABC transporter inner membrane protein; PFAM: Branched-chain amino acid transport system / permease component
YP_003508422.1	PFAM: inner-membrane translocator; SPTR: A9U754 Predicted protein (Fragment); InterPro IPR001851; COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; KEGG: hypothetical protein; PFAM: Branched-chain amino acid transport system / permease component
YP_003508423.1	PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593:IPR017871; KEGG: cvi:CV_1505 leucine/isoleucine/valine transport system ATP-binding protein; COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; SPTR: A5MI49 Branched-chain amino acid ABC transporter, ATP-binding protein; PFAM: ABC transporter
YP_003508424.1	PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593:IPR017871; KEGG: dds:Ddes_1482 ABC transporter related; COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; SPTR: A1HSL3 ABC transporter related; PFAM: ABC transporter
YP_003508425.1	PFAM: Cupin 2 conserved barrel domain protein; InterPro IPR013096; KEGG: bte:BTH_II0571 pectin degradation protein KdgF; SPTR: A8MDI0 Cupin 2 conserved barrel domain protein; PFAM: Cupin domain
YP_003508426.1	PFAM: GCN5-related N-acetyltransferase; InterPro IPR000182; KEGG: hch:HCH_00228 histone acetyltransferase HPA2-like acetyltransferase; SPTR: A0YPS2 Acetyltransferase, GNAT family protein; PFAM: Acetyltransferase (GNAT) family
YP_003508427.1	PFAM: protein of unknown function DUF1232; SPTR: A2V3C5 Putative uncharacterized protein; InterPro IPR010652; COGs: COG3339 conserved hypothetical protein; KEGG: she:Shewmr4_3655 hypothetical protein; PFAM: Protein of unknown function (DUF1232)
YP_003508428.1	PFAM: extracellular solute-binding protein family 5; SPTR: A6CLS9 Putative uncharacterized protein; InterPro IPR000914; COGs: COG0747 ABC-type dipeptide transport system periplasmic component; KEGG: bha:BH3644 dipeptide ABC transporter (dipeptide-binding protein); PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle
YP_003508429.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A6FBC5 Dipeptide ABC transporter, permease protein; InterPro IPR000515; COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; KEGG: sgl:SG0061 dipeptide transporter permease DppB; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003508430.1	InterPro IPR000515; PFAM: binding-protein-dependent transport systems inner membrane component; COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; KEGG: bha:BH3642 dipeptide ABC transporter (permease); SPTR: A3I3V9 Dipeptide ABC transporter (Permease); PFAM: Binding-protein-dependent transport system inner membrane component
YP_003508431.1	KEGG: gme:Gmet_0791 hypothetical protein
YP_003508432.1	TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Miro domain protein; InterPro IPR006073:IPR013684:IPR002917:IPR005225; KEGG: bcy:Bcer98_1227 GTP-binding protein EngA; COGs: COG1160 GTPase; SPTR: Q1IWI7 GTP-binding protein engA; PFAM: GTPase of unknown function; TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein domain
YP_003508433.1	PFAM: short-chain dehydrogenase/reductase SDR; SPTR: A0YN95 Short-chain dehydrogenase/reductase SDR; InterPro IPR002347:IPR002198; COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; KEGG: met:M446_3512 short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase
YP_003508435.1	PFAM: transposase IS4 family protein; InterPro IPR002559; KEGG: tdn:Suden_1713 transposase IS4; SPTR: A1ZSG8 Transposase, IS4; PFAM: Transposase DDE domain
YP_003508437.1	InterPro IPR010916
YP_003508438.1	PFAM: Ion transport protein; InterPro IPR005821; KEGG: swd:Swoo_4024 ion transport protein; SPTR: A6GA84 K+ transporter, Kef-type; PFAM: Ion transport protein
YP_003508439.1	PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; InterPro IPR002123; KEGG: afw:Anae109_4324 phospholipid/glycerol acyltransferase; COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; SPTR: A6FZM2 Putative uncharacterized protein; PFAM: Acyltransferase
YP_003508440.1	TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein; InterPro IPR000352:IPR005139:IPR004373; KEGG: gur:Gura_4061 peptide chain release factor 1; COGs: COG0216 Protein chain release factor A; SPTR: P96077 Peptide chain release factor 1; PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 1
YP_003508441.1	PFAM: NUDIX hydrolase; SPTR: Q2NFY7 NudC; InterPro IPR000086; COGs: COG1051 ADP-ribose pyrophosphatase; KEGG: asa:ASA_1392 MutT/NUDIX family protein; PFAM: NUDIX domain
YP_003508442.1	TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; PRIAM: Phenylalanine--tRNA ligase; PFAM: B3/4 domain protein; ferredoxin-fold anticodon-binding; t-RNA-binding domain protein; tRNA synthetase B5; InterProIPR002547:IPR005121:IPR005147:IPR005146:IPR 004532; KEGG: afw:Anae109_1884 phenylalanyl-tRNA synthetase, beta subunit; COGs: COG0072 Phenylalanyl-tRNA synthetase beta subunit; SPTR: P27002 Phenylalanyl-tRNA synthetase beta chain; PFAM: B3/4 domain; tRNA synthetase B5 domain; Ferredoxin-fold anticodon binding domain; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial
YP_003508443.1	TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PRIAM: Phenylalanine--tRNA ligase; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; InterPro IPR004188:IPR002319:IPR006195:IPR004529; KEGG: maq:Maqu_2057 phenylalanyl-tRNA synthetase, alpha subunit; COGs: COG0016 Phenylalanyl-tRNA synthetase alpha subunit; SPTR: Q72HA1 Phenylalanyl-tRNA synthetase alpha chain; PFAM: tRNA synthetases class II core domain (F); Aminoacyl tRNA synthetase class II, N-terminal domain; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit
YP_003508445.1	PFAM: Phosphogluconate dehydrogenase, NAD-binding, putative-like; 6-phosphogluconate dehydrogenase NAD-binding; SPTR: A3RUC0 FldX protein; InterPro IPR015814:IPR006115; COGs: COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenase; KEGG: spe:Spro_2089 phosphogluconate dehydrogenase, NAD-binding, putative-like protein; PFAM: NAD binding domain of 6-phosphogluconate dehydrogenase; Domain of unknown function (DUF1932)
YP_003508446.1	PFAM: Dimethylmenaquinone methyltransferase; SPTR: A6EYW4 Putative uncharacterized protein; InterPro IPR005493; COGs: COG0684 Demethylmenaquinone methyltransferase; KEGG: sus:Acid_6636 hypothetical protein; PFAM: Demethylmenaquinone methyltransferase
YP_003508447.1	PFAM: LmbE family protein; SPTR: A6BW47 Putative uncharacterized protein; InterPro IPR003737; COGs: COG2120 conserved hypothetical protein LmbE homologs; KEGG: bpt:Bpet3606 hypothetical protein; PFAM: GlcNAc-PI de-N-acetylase
YP_003508448.1	KEGG: sus:Acid_3734 hypothetical protein; SPTR: A8M903 Putative uncharacterized protein
YP_003508449.1	PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; InterPro IPR000485:IPR000524:IPR011711; KEGG: regulatory protein, GntR; COGs: COG1802 Transcriptional regulators; SPTR: A0AE44 Putative GntR-family transcriptional regulator; PFAM: FCD domain; Bacterial regulatory proteins, gntR family
YP_003508450.1	TIGRFAM: catechol 2,3 dioxygenase; PRIAM: Catechol 2,3-dioxygenase; InterPro IPR004360:IPR017624; SPTR: P31003 Metapyrocatechase; KEGG: bja:blr3819 metapyrocatechase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: catechol 2,3 dioxygenase
YP_003508451.1	PRIAM: 4-hydroxybenzoate 3-monooxygenase; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; InterPro IPR003042:IPR002938:IPR006076; KEGG: bcj:BCAM0057 p-hydroxybenzoate hydroxylase; COGs: COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductase; SPTR: A2W1X4 2-polyprenyl-6-methoxyphenol hydroxylase; PFAM: FAD binding domain; TIGRFAM: 4-hydroxybenzoate 3-monooxygenase
YP_003508452.1	SPTR: A0FKG3 Putative uncharacterized protein
YP_003508453.1	PFAM: aromatic-ring-hydroxylating dioxygenase beta subunit; SPTR: A0FKG2 Putative ring-hydroxylating dioxygenase small subunit; InterPro IPR000391; COGs: COG5517 Small subunit of phenylpropionate dioxygenase; KEGG: bpt:Bpet1513 biphenyl dioxygenase small subunit; PFAM: Ring hydroxylating beta subunit
YP_003508454.1	PFAM: Aromatic-ring-hydroxylating dioxygenase, alpha subunit-like; Rieske [2Fe-2S] domain protein; SPTR: A2SW63 Putative PAH ring-hydroxylating dioxygenase large subunit 2; InterPro IPR001663:IPR015879:IPR005806:IPR015881; COGs: COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenase large terminal subunit; KEGG: pna:Pnap_4152 ring hydroxylating dioxygenase, alpha subunit; PFAM: Rieske [2Fe-2S] domain; Ring hydroxylating alpha subunit (catalytic domain)
YP_003508455.1	COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003439:IPR003593:IPR017871; KEGG: mno:Mnod_8564 ABC transporter related; SMART: AAA ATPase; SPTR: A6E4V4 Inner-membrane translocator ABC transporter; PFAM: ABC transporter related; PFAM: ABC transporter
YP_003508456.1	PFAM: inner-membrane translocator; SPTR: A3RTZ0 LivM; InterPro IPR001851; COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; KEGG: bpt:Bpet4492 putative branched-chain amino acid transport permease; PFAM: Branched-chain amino acid transport system / permease component
YP_003508457.1	PFAM: inner-membrane translocator; SPTR: A3J7V0 Inner-membrane translocator; InterPro IPR001851; COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; KEGG: reu:Reut_C6212 inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component
YP_003508458.1	PFAM: Extracellular ligand-binding receptor; SPTR: A3W8R2 Putative ABC transporter subunit; InterPro IPR001828; COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; KEGG: bbr:BB1592 ABC transporter substrate-binding protein; PFAM: Receptor family ligand binding region
YP_003508459.1	TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: Transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR; InterPro IPR014757:IPR005471:IPR012794; KEGG: rlt:Rleg2_5886 transcriptional regulator, IclR family; COGs: COG1414 Transcriptional regulator; SPTR: A3LGX2 Transcriptional regulator PcaR; PFAM: IclR helix-turn-helix domain; Bacterial transcriptional regulator; TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family
YP_003508460.1	TIGRFAM: 3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; InterPro IPR003089:IPR000073:IPR012790; KEGG: mes:Meso_0446 3-oxoadipate enol-lactonase; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); SPTR: A3V8C9 Beta-ketoadipate enol-lactone hydrolase; PFAM: alpha/beta hydrolase fold; TIGRFAM: 3-oxoadipate enol-lactonase
YP_003508461.1	TIGRFAM: 4-carboxymuconolactone decarboxylase; PRIAM: 4-carboxymuconolactone decarboxylase; PFAM: Carboxymuconolactone decarboxylase; InterPro IPR003779:IPR012788; KEGG: azc:AZC_1444 beta-ketoadipate enol-lactone hydrolase protein; COGs: COG0599 gamma-carboxymuconolactone decarboxylase subunit; SPTR: A6F017 3-oxoadipate enol-lactonase; PFAM: Carboxymuconolactone decarboxylase family; TIGRFAM: alkylhydroperoxidase AhpD family core domain; 4-carboxymuconolactone decarboxylase
YP_003508462.1	TIGRFAM: protocatechuate 3,4-dioxygenase, beta subunit; PFAM: intradiol ring-cleavage dioxygenase; InterPro IPR000627:IPR012785; KEGG: bte:BTH_II1119 protocatechuate 3,4-dioxygenase, beta subunit; COGs: COG3485 Protocatechuate 3 4-dioxygenase beta subunit; SPTR: A5XJU2 Protocatechuate 3,4-dioxygenase, beta subunit; PFAM: Dioxygenase; TIGRFAM: protocatechuate 3,4-dioxygenase, beta subunit
YP_003508463.1	TIGRFAM: protocatechuate 3,4-dioxygenase, alpha subunit; PRIAM: Protocatechuate 3,4-dioxygenase; PFAM: intradiol ring-cleavage dioxygenase; InterPro IPR000627:IPR012786; KEGG: bja:blr0928 protocatechuate 3,4-dioxygenase alpha chain; COGs: COG3485 Protocatechuate 3 4-dioxygenase beta subunit; SPTR: A6F015 Protocatechuate 3,4-dioxygenase, alpha subunit; PFAM: Dioxygenase; TIGRFAM: protocatechuate 3,4-dioxygenase, alpha subunit
YP_003508464.1	TIGRFAM: 3-carboxy-cis,cis-muconate cycloisomerase; PFAM: fumarate lyase; InterPro IPR003031:IPR000362:IPR012789; KEGG: mes:Meso_3622 fumarate lyase; COGs: COG0015 Adenylosuccinate lyase; SPTR: Q0CR85 Putative uncharacterized protein; PFAM: Lyase; TIGRFAM: 3-carboxy-cis,cis-muconate cycloisomerase
YP_003508465.1	TIGRFAM: 3-oxoacid CoA-transferase, B subunit; 3-oxoacid CoA-transferase, A subunit; PRIAM: 3-oxoacid CoA-transferase; PFAM: coenzyme A transferase; InterPro IPR004165:IPR004163:IPR012791:IPR012792; KEGG: dar:Daro_1021 butyryl-CoA:acetate CoA transferase; COGs: COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase beta subunit; SPTR: Q54JD9 Probable succinyl-CoA:3-ketoacid-coenzyme A transferase, mitochondrial; PFAM: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; 3-oxoacid CoA-transferase, A subunit
YP_003508466.1	SPTR: Q2JV01 UPF0078 membrane protein CYA_1269; KEGG: scl:sce5504 hypothetical protein; PFAM: protein of unknown function DUF205; InterPro IPR003811; COGs: COG0344 membrane protein; PFAM: Domain of unknown function DUF; TIGRFAM: conserved hypothetical integral membrane protein TIGR00023
YP_003508467.1	TIGRFAM: argininosuccinate synthase; PRIAM: Argininosuccinate synthase; PFAM: argininosuccinate synthase; InterPro IPR001518; KEGG: rru:Rru_A3751 argininosuccinate synthase; COGs: COG0137 Argininosuccinate synthase; SPTR: P59846 Argininosuccinate synthase; PFAM: Arginosuccinate synthase; TIGRFAM: argininosuccinate synthase
YP_003508468.1	PFAM: GCN5-related N-acetyltransferase; InterPro IPR000182; KEGG: hne:HNE_0353 acetyltransferase; SPTR: B6P8C2 Putative uncharacterized protein (Fragment); PFAM: Acetyltransferase (GNAT) family
YP_003508469.1	TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; InterPro IPR003031:IPR000362:IPR009049; KEGG: tgr:Tgr7_0033 argininosuccinate lyase; COGs: COG0165 Argininosuccinate lyase; SPTR: Q5SLL0 Argininosuccinate lyase; PFAM: Lyase; TIGRFAM: argininosuccinate lyase
YP_003508470.1	PFAM: GCN5-related N-acetyltransferase; SPTR: A1HLR7 GCN5-related N-acetyltransferase; InterPro IPR000182; COGs: COG1246 N-acetylglutamate synthase and related acetyltransferase; KEGG: pca:Pcar_2325 acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_003508471.1	SPTR: A5UJN9 Putative uncharacterized protein
YP_003508472.1	TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I; InterProIPR006220:IPR011702:IPR001317:IPR002474:IPR 000991:IPR006274; KEGG: sfu:Sfum_0009 carbamoyl phosphate synthase small subunit; COGs: COG0505 Carbamoylphosphate synthase small subunit; SPTR: Q72GZ0 Carbamoyl-phosphate synthase small chain; PFAM: Carbamoyl-phosphate synthase small chain, CPSase domain; Glutamine amidotransferase class-I; TIGRFAM: carbamoyl-phosphate synthase, small subunit
YP_003508473.1	PFAM: DNA polymerase beta domain protein region; SPTR: B7R2I7 Nucleotidyltransferase; InterPro IPR002934; COGs: COG1669 nucleotidyltransferase; KEGG: mpo:Mpop_1733 DNA polymerase beta domain protein region; PFAM: Nucleotidyltransferase domain
YP_003508474.1	PFAM: protein of unknown function DUF86; SPTR: A0ZED3 Putative uncharacterized protein; InterPro IPR008201; COGs: COG2361 conserved hypothetical protein; KEGG: gur:Gura_4166 hypothetical protein; PFAM: Protein of unknown function DUF86
YP_003508476.1	PFAM: putative esterase; SPTR: Q8U1U7 Putative alpha-dextrin endo-1, 6-alpha-glucosidase; InterPro IPR000801; COGs: COG2819 hydrolase of the alpha/beta superfamily; KEGG: sus:Acid_3934 putative esterase; PFAM: Putative esterase
YP_003508477.1	PRIAM: Sarcosine oxidase; PFAM: FAD dependent oxidoreductase; InterPro IPR006076; KEGG: met:M446_0118 sarcosine oxidase; COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); SPTR: Q827H4 Monomeric sarcosine oxidase; PFAM: FAD dependent oxidoreductase; TIGRFAM: sarcosine oxidase, monomeric form
YP_003508478.1	PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; SPTR: A3RVB2 Quinone oxidoreductase; InterPro IPR013154:IPR013149; COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; KEGG: mpt:Mpe_A1251 NADPH quinone oxidoreductase, putative; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase
YP_003508479.1	InterPro IPR006076:IPR002937:IPR014105; TIGRFAM: phytoene desaturase; COGs: COG1233 Phytoene dehydrogenase and related protein; SPTR: A0YJE5 Phytoene dehydrogenase CrtI; KEGG: scl:sce0580 phytoene dehydrogenase; PFAM: amine oxidase; FAD dependent oxidoreductase; PFAM: Flavin containing amine oxidoreductase; TIGRFAM: phytoene desaturase
YP_003508480.1	PRIAM: Type II site-specific deoxyribonuclease; KEGG: swp:swp_0840 Eco47I restriction endonuclease; SPTR: P50194 Type-2 restriction enzyme Eco47I; PFAM: SinI restriction endonuclease
YP_003508481.1	TIGRFAM: threonine dehydratase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; amino acid-binding ACT domain protein; InterPro IPR002912:IPR001926:IPR000634:IPR005789; KEGG: mxa:MXAN_5874 threonine dehydratase; COGs: COG1171 Threonine dehydratase; SPTR: A1HR78 Threonine dehydratase; PFAM: ACT domain; Pyridoxal-phosphate dependent enzyme; TIGRFAM: threonine dehydratase, medium form
YP_003508482.1	PFAM: adenylate cyclase; SPTR: A0ZAY3 Putative uncharacterized protein; InterPro IPR008172; COGs: COG2954 conserved hypothetical protein; KEGG: dps:DP0717 hypothetical protein; PFAM: CYTH domain
YP_003508483.1	PFAM: glycosyl transferase group 1; SPTR: A4C0E5 Glycosyl transferase, group 1 family protein; InterPro IPR001296; COGs: COG0438 Glycosyltransferase; KEGG: sus:Acid_7283 glycosyl transferase, group 1; PFAM: Glycosyl transferases group 1
YP_003508484.1	TIGRFAM: trehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; InterPro IPR006047:IPR006589:IPR012810; KEGG: rlt:Rleg2_5383 trehalose synthase; COGs: COG0366 Glycosidase; SPTR: O06458 Trehalose synthase; PFAM: Alpha amylase, catalytic domain; TIGRFAM: trehalose synthase
YP_003508485.1	TIGRFAM: trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB; PRIAM: Trehalose-phosphatase; PFAM: trehalose-phosphatase; InterPro IPR003337:IPR006379; KEGG: bpd:BURPS668_2755 trehalose-phosphatase; COGs: COG1877 Trehalose-6-phosphatase; SPTR: A8KVC5 Trehalose-phosphatase; PFAM: Trehalose-phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; trehalose-phosphatase
YP_003508486.1	TIGRFAM: alpha,alpha-trehalose-phosphate synthase [UDP-forming]; PRIAM: Alpha,alpha-trehalose-phosphate synthase (UDP-forming); PFAM: glycosyl transferase family 20; InterPro IPR001830:IPR012766; KEGG: acp:A2cp1_0478 HAD-superfamily hydrolase, subfamily IIB; COGs: COG0380 Trehalose-6-phosphate synthase; SPTR: Q64EB6 Trehalose-6-phosphate synthase; PFAM: Glycosyltransferase family 20; TIGRFAM: alpha,alpha-trehalose-phosphate synthase [UDP-forming]
YP_003508487.1	SPTR: A1HRE9 Exopolysaccharide biosynthesis protein
YP_003508488.1	PFAM: acyl-CoA dehydrogenase domain protein; SPTR: A7CNG6 Acyl-CoA dehydrogenase domain protein; InterPro IPR006090:IPR006092:IPR006091; COGs: COG1960 Acyl-CoA dehydrogenase; KEGG: bpy:Bphyt_5032 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain
YP_003508489.1	TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase; InterPro IPR001057:IPR001048:IPR004662; KEGG: afw:Anae109_0632 arginine biosynthesis bifunctional protein ArgJ; COGs: COG0548 Acetylglutamate kinase; SPTR: O50147 Putative acetylglutamate kinase-like protein; PFAM: Amino acid kinase family; TIGRFAM: acetylglutamate kinase
YP_003508490.1	PFAM: protein of unknown function DUF84; SPTR: A3H0T1 Putative uncharacterized protein; InterPro IPR002786; COGs: COG1986 conserved hypothetical protein; KEGG: vco:VC0395_A0232 NTPase; PFAM: Protein of unknown function DUF84; TIGRFAM: conserved hypothetical protein TIGR00258
YP_003508491.1	COGs: COG0002 Acetylglutamate semialdehyde dehydrogenase; InterPro IPR000534:IPR012280:IPR000706; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; KEGG: sat:SYN_00234 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region; SPTR: O50146 N-acetyl-gamma-glutamyl-phosphate/N-acetyl-gamma- aminoadipyl-phosphate reductase; PRIAM: N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase, common form
YP_003508492.1	TIGRFAM: lysine biosynthesis enzyme LysX; alpha-L-glutamate ligase, RimK family; PFAM: RimK domain protein ATP-grasp; protein of unknown function DUF201; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; InterProIPR003135:IPR003806:IPR013651:IPR011761:IPR 004666:IPR011870; KEGG: mxa:MXAN_0352 ribosomal protein S6 modification protein; COGs: COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); SPTR: Q3IMD9 Probable arginine biosynthesis regulator (Lysine biosynthesis regulator lysX homolog); PFAM: RimK-like ATP-grasp domain; TIGRFAM: Lysine biosynthesis enzyme LysX; alpha-L-glutamate ligases, RimK family
YP_003508493.1	TIGRFAM: lysine biosynthesis protein LysW; InterPro IPR005906; SPTR: Q5UZ48 Putative uncharacterized protein; TIGRFAM: lysine biosynthesis protein LysW
YP_003508494.1	KEGG: zinc finger protein
YP_003508495.1	TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; InterPro IPR000573:IPR011827; KEGG: sfu:Sfum_3030 3-isopropylmalate dehydratase, small subunit; COGs: COG0066 3-isopropylmalate dehydratase small subunit; SPTR: Q9ZND9 Homoaconitase small subunit; PFAM: Aconitase C-terminal domain; TIGRFAM: 3-isopropylmalate dehydratase, small subunit
YP_003508496.1	TIGRFAM: 3-isopropylmalate dehydratase; homoaconitate hydratase family protein; PRIAM: Homoaconitate hydratase; PFAM: aconitate hydratase domain protein; InterPro IPR001030:IPR011826:IPR006251; KEGG: sfu:Sfum_3029 3-isopropylmalate dehydratase, large subunit; COGs: COG0065 3-isopropylmalate dehydratase large subunit; SPTR: Q9ZNE0 Homoaconitase large subunit; PFAM: Aconitase family (aconitate hydratase); TIGRFAM: homoaconitate hydratase family protein; 3-isopropylmalate dehydratase, large subunit
YP_003508497.1	PFAM: pyruvate carboxyltransferase; SPTR: O87198 Homocitrate synthase; InterPro IPR000891:IPR002034; COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; KEGG: hypothetical protein; PFAM: HMGL-like
YP_003508498.1	PFAM: extracellular solute-binding protein family 1; SPTR: A0NN44 Probable extracellular solute-binding protein; KEGG: dvm:DvMF_0656 extracellular solute-binding protein family 1; COGs: COG1653 ABC-type sugar transport system periplasmic component; InterPro IPR006059; PFAM: Bacterial extracellular solute-binding protein
YP_003508499.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A3U191 Putative sugar ABC transporter permease protein; InterPro IPR000515; COGs: COG0395 ABC-type sugar transport system permease component; KEGG: rpd:RPD_3150 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003508500.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A6ZIK9 Bioflim formation-related protein 2; InterPro IPR000515; COGs: COG1175 ABC-type sugar transport systems permease components; KEGG: mca:MCA1942 sugar ABC transporter, permease protein; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003508501.1	PFAM: metal-dependent phosphohydrolase HD sub domain; response regulator receiver; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region; InterPro IPR001789:IPR006674:IPR003607; KEGG: bpy:Bphyt_0187 response regulator receiver modulated metal dependent phosphohydrolase; COGs: COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain; SPTR: A3ZTR4 Response regulator; PFAM: Response regulator receiver domain; HD domain; TIGRFAM: uncharacterized domain HDIG
YP_003508502.1	PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; InterPro IPR000209; KEGG: bam:Bamb_3992 peptidase S8 and S53, subtilisin, kexin, sedolisin; SPTR: A8CV69 Peptidase S8 and S53, subtilisin, kexin, sedolisin; PFAM: Subtilase family
YP_003508503.1	KEGG: mca:MCA0654 CRISPR-associated Csh2 family protein; SPTR: A7JQI9 Putative uncharacterized protein; PFAM: Family of unknown function (DUF694); TIGRFAM: CRISPR-associated protein, CT1132 family
YP_003508504.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; SMART: GGDEF domain containing protein; GAF domain protein; InterPro IPR000160:IPR003018; KEGG: gbm:Gbem_1202 diguanylate cyclase; COGs: COG2199 FOG: GGDEF domain; SPTR: A6FCV1 Putative uncharacterized protein; PFAM: GGDEF domain; GAF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_003508505.1	PRIAM: Argininosuccinate lyase; PFAM: fumarate lyase; InterPro IPR003031:IPR000362; KEGG: oan:Oant_2482 argininosuccinate lyase; COGs: COG0165 Argininosuccinate lyase; SPTR: Q8U705 Argininosuccinate lyase 2; PFAM: Lyase; TIGRFAM: argininosuccinate lyase
YP_003508506.1	PRIAM: 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; InterPro IPR001804; KEGG: xac:XAC1046 isocitrate dehydrogenase; COGs: COG0473 Isocitrate/isopropylmalate dehydrogenase; SPTR: Q58130 3-isopropylmalate/3-methylmalate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase; isopropylmalate/isohomocitrate dehydrogenases
YP_003508507.1	TIGRFAM: type IV pilus assembly protein PilM; SPTR: A9U7X1 Predicted protein (Fragment); InterPro IPR005883; COGs: COG4972 Tfp pilus assembly protein ATPase PilM; KEGG: hypothetical protein; TIGRFAM: cell division protein FtsA; type IV pilus assembly protein PilM
YP_003508508.1	KEGG: hypothetical protein; SPTR: A9U7X1 Predicted protein (Fragment)
YP_003508509.1	KEGG: csa:Csal_0610 pilus assembly protein, PilO; SPTR: A1HQ12 Putative uncharacterized protein
YP_003508510.1	KEGG: hypothetical protein; SPTR: B8XNP4 Platelet glycoprotein Ib alpha polypeptide
YP_003508511.1	PFAM: type II and III secretion system protein; NolW domain protein; SPTR: A4BES0 Type II secretory pathway, component PulD; InterProIPR003522:IPR001814:IPR001775:IPR004846:IPR 005644:IPR004845; COGs: COG1450 Type II secretory pathway component PulD; KEGG: glo:Glov_1281 general secretion pathway protein D; PFAM: Bacterial type II and III secretion system protein; Bacterial type II/III secretion system short domain
YP_003508512.1	TIGRFAM: chorismate synthase; PRIAM: Chorismate synthase; PFAM: chorismate synthase; InterPro IPR000453; KEGG: bha:BH1656 chorismate synthase; COGs: COG0082 Chorismate synthase; SPTR: Q5SII5 Chorismate synthase; PFAM: Chorismate synthase; TIGRFAM: chorismate synthase
YP_003508513.1	PRIAM: Shikimate kinase; PFAM: shikimate kinase; InterPro IPR000623; KEGG: pna:Pnap_0678 shikimate kinase; COGs: COG0703 Shikimate kinase; SPTR: Q5SII4 Shikimate kinase; PFAM: Shikimate kinase
YP_003508514.1	PRIAM: 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase; InterPro IPR002658; KEGG: xcv:XCV3161 3-dehydroquinate synthase; COGs: COG0337 3-dehydroquinate synthetase; SPTR: Q67N10 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase
YP_003508515.1	TIGRFAM: alanine dehydrogenase; PRIAM: Alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; InterPro IPR007886:IPR007698:IPR008143:IPR008141; KEGG: neu:NE0022 alanine dehydrogenase; COGs: COG0686 Alanine dehydrogenase; SPTR: A8QVZ6 Alanine dehydrogenase; PFAM: Alanine dehydrogenase/PNT, N-terminal domain; Alanine dehydrogenase/PNT, C-terminal domain; TIGRFAM: alanine dehydrogenase
YP_003508516.1	PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; InterPro IPR000485; KEGG: bac:BamMC406_4349 AsnC family transcriptional regulator; COGs: COG1522 Transcriptional regulators; SPTR: A2VYP6 Regulatory proteins, AsnC/Lrp; PFAM: AsnC family
YP_003508517.1	COGs: COG0130 Pseudouridine synthase; InterPro IPR002501:IPR014780; KEGG: ade:Adeh_1105 tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; SPTR: Q5SLS6 tRNA pseudouridine synthase B; TIGRFAM: tRNA pseudouridine synthase B; PFAM: TruB family pseudouridylate synthase (N terminal domain); TIGRFAM: tRNA pseudouridine 55 synthase
YP_003508518.1	PFAM: Enoyl-CoA hydratase/isomerase; SPTR: A2VV15 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; KEGG: bpa:BPP0361 enoyl-CoA hydratase; PFAM: Enoyl-CoA hydratase/isomerase family
YP_003508519.1	PFAM: RNA-binding S4 domain protein; pseudouridine synthase; SMART: RNA-binding S4 domain protein; InterPro IPR002942:IPR006145:IPR000748; KEGG: glo:Glov_2728 pseudouridine synthase; COGs: COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase; SPTR: A4ECD6 Pseudouridine synthase; PFAM: S4 domain; RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase family
YP_003508520.1	TIGRFAM: hypoxanthine phosphoribosyltransferase; PRIAM: Hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; InterPro IPR000836:IPR005904; KEGG: afw:Anae109_0131 hypoxanthine phosphoribosyltransferase; COGs: COG0634 Hypoxanthine-guanine phosphoribosyltransferase; SPTR: A1HRR9 Hypoxanthine phosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: hypoxanthine phosphoribosyltransferase
YP_003508521.1	TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF165; InterPro IPR003744; KEGG: rpi:Rpic_0375 hypothetical protein; COGs: COG1738 conserved hypothetical protein; SPTR: A7CF71 Conserved hypothetical integral membrane protein; PFAM: Uncharacterized ACR, YhhQ family COG1738; TIGRFAM: conserved hypothetical integral membrane protein
YP_003508522.1	PFAM: FAD linked oxidase domain protein; SPTR: A0NUZ3 ATPase, E1-E2 type; InterPro IPR004113:IPR006094; COGs: COG0277 FAD/FMN-containing dehydrogenase; KEGG: pst:PSPTO_3555 glycolate oxidase subunit GlcD; PFAM: FAD binding domain; FAD linked oxidases, C-terminal domain; TIGRFAM: glycolate oxidase, subunit GlcD
YP_003508523.1	PFAM: FAD linked oxidase domain protein; SPTR: A3X696 Glycolate oxidase, GlcE subunit; InterPro IPR006094; COGs: COG0277 FAD/FMN-containing dehydrogenase; KEGG: swi:Swit_0992 FAD linked oxidase domain-containing protein; PFAM: FAD binding domain
YP_003508524.1	PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: A6CBN0 Putative uncharacterized protein; InterPro IPR001450:IPR004017:IPR017900; COGs: COG0247 Fe-S oxidoreductase; KEGG: rce:RC1_2148 glycolate oxidase, iron-sulfur subunit; PFAM: Cysteine-rich domain; 4Fe-4S binding domain
YP_003508525.1	SPTR: Q44472 Putative hydroxypyruvate reductase; COGs: COG2379 Putative glycerate kinase; KEGG: atc:AGR_L_3166 putative hydroxypyruvate reductase
YP_003508526.1	PRIAM: Hydroxypyruvate reductase; PFAM: MOFRL domain protein; InterPro IPR007835:IPR000897; KEGG: rpi:Rpic_3481 hydroxypyruvate reductase; COGs: COG2379 Putative glycerate kinase; SPTR: A7CAK4 Hydroxypyruvate reductase; PFAM: MOFRL family
YP_003508527.1	SPTR: A1HSP6 Carboxylesterase; COGs: COG1647 Esterase/lipase; KEGG: mxa:MXAN_6764 hydrolase, alpha/beta fold family
YP_003508528.1	PFAM: RNA-binding S4 domain protein; SPTR: A6ZIJ7 RNA-binding protein; InterPro IPR002942; COGs: COG2302 conserved hypothetical protein contains S4-like domain; KEGG: hypothetical protein, conserved; PFAM: S4 domain
YP_003508529.1	InterProIPR003439:IPR001140:IPR003593:IPR017871:IPR 017940; PFAM: ABC transporter related; ABC transporter transmembrane region; COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; SPTR: A3WTM0 ABC transporter, ATP-binding/permease protein; KEGG: rpd:RPD_4342 ABC transporter, ATP-binding/permease protein; SMART: AAA ATPase; PFAM: ABC transporter; ABC transporter transmembrane region
YP_003508530.1	SPTR: A0ZAB0 Putative uncharacterized protein; COGs: COG0763 Lipid A disaccharide synthetase; KEGG: hypothetical protein
YP_003508531.1	TIGRFAM:acyl-[acyl-carrier-protein]--UDP-N-acetylgl ucosamineO-acyltransferase; PRIAM:Acyl-[acyl-carrier-protein]--UDP-N-acetylgluc osamineO-acyltransferase; InterPro IPR001451:IPR010137; KEGG: noc:Noc_1752 UDP-N-acetylglucosamine acyltransferase; COGs: COG1043 Acyl-(acyl carrier protein); SPTR: A1HU35 Acyl-(Acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase; PFAM: Bacterial transferase hexapeptide (three repeats); TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase
YP_003508532.1	TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; InterPro IPR013114:IPR010084; KEGG: spe:Spro_3779 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; COGs: COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase; SPTR: Q5SHB5 (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; PFAM: FabA-like domain; TIGRFAM: beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ
YP_003508533.1	PFAM: oxidoreductase domain protein; Oxidoreductase domain; SPTR: A5YSP8 Probable oxidoreductase; InterPro IPR000683:IPR004104; COGs: COG0673 dehydrogenase and related protein; KEGG: ppd:Ppro_3022 oxidoreductase domain-containing protein; PFAM: Oxidoreductase family, C-terminal alpha/beta domain; Oxidoreductase family, NAD-binding Rossmann fold
YP_003508534.1	PFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; SPTR: Q8DI02 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; InterPro IPR004463; COGs: COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase; KEGG: pca:Pcar_2343 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; PFAM: UDP-3-O-acyl N-acetylglycosamine deacetylase; TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase
YP_003508535.1	PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD; transferase hexapeptide repeat containing protein; SPTR: Q2JVM2 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; InterPro IPR001451:IPR007691; COGs: COG1044 UDP-3-O-(3-hydroxymyristoyl); KEGG: mgm:Mmc1_1417 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: Bacterial transferase hexapeptide (three repeats); UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD; TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
YP_003508536.1	TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; cell division protein FtsA; InterPro IPR004753:IPR003494; KEGG: bcy:Bcer98_3167 cell shape determining protein MreB; COGs: COG1077 Actin-like ATPase involved in cell morphogenesis; SPTR: A6ZIJ9 MreB; PFAM: Cell division protein FtsA; TIGRFAM: cell shape determining protein, MreB/Mrl family
YP_003508538.1	KEGG: Os07g0492100; hypothetical protein
YP_003508539.1	PFAM: Bifunctional DNA primase/polymerase; InterPro IPR015330; KEGG: mno:Mnod_4088 bifunctional DNA primase/polymerase; SPTR: A3V8A1 DNA primase domain protein; PFAM: Bifunctional DNA primase/polymerase, N-terminal
YP_003508544.1	PFAM: integrase family protein; SPTR: B3GVW7 Putative uncharacterized protein; InterPro IPR002104; COGs: COG4974 Site-specific recombinase XerD; KEGG: bce:BC1272 DNA integration/recombination/invertion protein; PFAM: Phage integrase family
YP_003508545.1	TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase; InterPro IPR001048:IPR004662; KEGG: hypothetical protein; K00930 acetylglutamate kinase; COGs: COG0548 Acetylglutamate kinase; SPTR: Q5SGY0 Acetylglutamate/acetylaminoadipate kinase; PFAM: Amino acid kinase family; TIGRFAM: acetylglutamate kinase
YP_003508546.1	PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; SPTR: A6GF23 Zinc-binding alcohol dehydrogenase; InterPro IPR013154:IPR013149; COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; KEGG: afw:Anae109_2774 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase
YP_003508548.1	PFAM: protein of unknown function DUF88; SPTR: A0ZGC9 Putative uncharacterized protein; InterPro IPR002790; COGs: COG1432 conserved hypothetical protein; KEGG: ccs:CCNA_01619 cytosolic protein; PFAM: Protein of unknown function DUF88
YP_003508550.1	PFAM: protein of unknown function DUF214; SPTR: A2W920 ABC-type transport system permease component; InterPro IPR003838; COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; KEGG: rfr:Rfer_3232 LolC/E family lipoprotein releasing system, transmembrane protein; PFAM: Predicted permease
YP_003508551.1	SPTR: A7XXM2 Putative uncharacterized protein; COGs: COG3584 conserved hypothetical protein; KEGG: sun:SUN_1623 hypothetical protein
YP_003508552.1	PFAM: Dak phosphatase; SPTR: A8CTV1 Dak phosphatase; InterPro IPR004007; COGs: COG1461 kinase related to dihydroxyacetone kinase; KEGG: bsu:BSU15840 hypothetical protein; PFAM: DAK2 domain; TIGRFAM: DAK2 domain fusion protein YloV
YP_003508553.1	PFAM: protein of unknown function DUF322; SPTR: A1HQ70 Putative uncharacterized protein; InterPro IPR005531; COGs: COG1302 conserved hypothetical protein; KEGG: bha:BH2499 hypothetical protein; PFAM: Protein of unknown function (DUF322)
YP_003508555.1	TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PRIAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; InterPro IPR003331; KEGG: bat:BAS5117 UDP-N-acetylglucosamine 2-epimerase; COGs: COG0381 UDP-N-acetylglucosamine 2-epimerase; SPTR: P58600 Probable UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase
YP_003508556.1	PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; SPTR: A3WBN9 Peptidyl-prolyl cis-trans isomerase; InterPro IPR002130; COGs: COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; KEGG: ade:Adeh_3603 peptidyl-prolyl cis-trans isomerase, cyclophilin type; PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
YP_003508557.1	PFAM: alpha/beta hydrolase fold; SPTR: A0EJL0 Lysophospholipase; InterPro IPR000073; COGs: COG2267 Lysophospholipase; KEGG: dal:Dalk_0147 alpha/beta hydrolase fold protein; PFAM: Acetyl xylan esterase (AXE1); alpha/beta hydrolase fold
YP_003508558.1	PFAM: extracellular solute-binding protein family 1; SPTR: A0NN44 Probable extracellular solute-binding protein; InterPro IPR006059; COGs: COG1653 ABC-type sugar transport system periplasmic component; KEGG: kpn:KPN_04678 putative sn-glycerol-3-phosphate-binding periplasmic protein; PFAM: Bacterial extracellular solute-binding protein
YP_003508559.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; SPTR: Q4J702 Oxidoreductase; InterPro IPR002347:IPR002424:IPR013968:IPR002198; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); KEGG: bja:bll6055 putative oxidoreductase; PFAM: short chain dehydrogenase
YP_003508560.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A3W0Y6 Putative uncharacterized protein; InterPro IPR000515; COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; KEGG: dppC; ABC transporter membrane spanning protein (dipeptide) ; K02034 peptide/nickel transport system permease protein; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003508561.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A4EG91 Peptide/opine/nickel uptake family ABC transporter, permease protein; InterPro IPR000515; COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; KEGG: mes:Meso_1312 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003508562.1	PFAM: extracellular solute-binding protein family 5; SPTR: A3TVX0 Peptide/opine/nickel uptake family ABC transporter, periplasmic substrate-binding protein; InterPro IPR000914:IPR005829; COGs: COG0747 ABC-type dipeptide transport system periplasmic component; KEGG: azc:AZC_2698 ABC transporter substrate binding protein; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle
YP_003508563.1	COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR011650:IPR002933:IPR001261:IPR010182; KEGG: mno:Mnod_8178 peptidase M20; PFAM: peptidase M20; peptidase dimerisation domain protein; SPTR: A3IE77 Putative uncharacterized protein; TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: Peptidase family M20/M25/M40; TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase
YP_003508564.1	PFAM: peptidase S58 DmpA; SPTR: P64812 Uncharacterized protein Mb1368; InterPro IPR005321; COGs: COG3191 L-aminopeptidase/D-esterase; KEGG: plu:plu2239 hypothetical protein; PFAM: Peptidase family S58
YP_003508565.1	SMART: zinc finger CDGSH-type domain protein; InterPro IPR006622; KEGG: rme:Rmet_4406 zinc finger, CDGSH-type; SPTR: A4EGN9 Putative uncharacterized protein; PFAM: Iron-binding zinc finger CDGSH type
YP_003508566.1	PRIAM: Phosphoenolpyruvate carboxykinase (GTP); PFAM: phosphoenolpyruvate carboxykinase (GTP); InterPro IPR008209; KEGG: gur:Gura_0870 phosphoenolpyruvate carboxykinase; COGs: COG1274 Phosphoenolpyruvate carboxykinase (GTP); SPTR: Q746Y3 Phosphoenolpyruvate carboxykinase [GTP]; PFAM: Phosphoenolpyruvate carboxykinase
YP_003508567.1	PFAM: thioesterase superfamily protein; SPTR: A3LIE5 Putative uncharacterized protein; InterPro IPR006683:IPR006684; COGs: COG0824 thioesterase; KEGG: pau:PA14_70350 hypothetical protein; PFAM: Thioesterase superfamily; TIGRFAM: conserved hypothetical protein TIGR00051
YP_003508568.1	PFAM: phosphoglucose isomerase (PGI); SPTR: Q5SLL6 Glucose-6-phosphate isomerase; InterPro IPR001672; COGs: COG0166 Glucose-6-phosphate isomerase; KEGG: afw:Anae109_2086 glucose-6-phosphate isomerase; PFAM: Phosphoglucose isomerase
YP_003508569.1	TIGRFAM: RelA/SpoT family protein; PRIAM: GTP diphosphokinase; PFAM: RelA/SpoT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; InterProIPR004095:IPR006674:IPR007685:IPR003607:IPR 000568:IPR004811; SPTR: A2UBF6 (P)ppGpp synthetase I, SpoT/RelA; KEGG: bha:BH1242 GTP pyrophosphokinase (stringent response); COGs: COG0317 Guanosine polyphosphate pyrophosphohydrolase/synthetase; SMART: metal-dependent phosphohydrolase HD region; PFAM: TGS domain; Region found in RelA / SpoT proteins; HD domain; TIGRFAM: (p)ppGpp synthetase, RelA/SpoT family
YP_003508570.1	PFAM: protein of unknown function DUF92 transmembrane; SPTR: Q5JGM0 Hypothetical membrane protein, conserved, DUF92 family; InterPro IPR002794; COGs: COG1836 membrane protein; KEGG: hypothetical protein, conserved; PFAM: Integral membrane protein DUF92; TIGRFAM: conserved hypothetical protein TIGR00297
YP_003508572.1	PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; InterPro IPR001789:IPR001867; KEGG: bac:BamMC406_3349 two component heavy metal response transcriptional regulator; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; SPTR: A2W140 Heavy metal response regulator; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_003508573.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; InterProIPR004358:IPR003594:IPR003660:IPR003661:IPR 005467; KEGG: lch:Lcho_0275 histidine kinase; COGs: COG0642 Signal transduction histidine kinase; SPTR: A3TIR7 Sensor protein; PFAM: His Kinase A (phosphoacceptor) domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_003508574.1	PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; SMART: regulatory protein DeoR; InterPro IPR001034:IPR013196:IPR014036; KEGG: rde:RD1_2417 transcriptional regulator, DeoR family, putative; COGs: COG1349 Transcriptional regulators of sugar metabolism; SPTR: A7V875 Putative uncharacterized protein; PFAM: DeoR-like helix-turn-helix domain; Bacterial regulatory proteins, deoR family
YP_003508575.1	PFAM: extracellular solute-binding protein family 1; SPTR: A7D7E6 Extracellular solute-binding protein, family 1; InterPro IPR006059; COGs: COG1653 ABC-type sugar transport system periplasmic component; KEGG: sugar ABC transporter ; K10188 lactose/L-arabinose transport system substrate-binding protein; PFAM: Bacterial extracellular solute-binding protein
YP_003508576.1	SPTR: A7D7E7 Binding-protein-dependent transport systems inner membrane component; KEGG: sugar ABC transporter ; K10189 lactose/L-arabinose transport system permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; InterPro IPR000515; COGs: COG1175 ABC-type sugar transport systems permease components; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003508577.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A7D7E8 Binding-protein-dependent transport systems inner membrane component; InterPro IPR000515; COGs: COG0395 ABC-type sugar transport system permease component; KEGG: atc:AGR_L_3322 putative integral membrane protein; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003508578.1	PRIAM: Beta-galactosidase; PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; Beta-galactosidase domain protein; InterPro IPR013739:IPR013738:IPR013529; KEGG: beta-galactosidase; COGs: COG1874 Beta-galactosidase; SPTR: A2W270 Beta-galactosidase; PFAM: Beta-galactosidase C-terminal domain; Beta-galactosidase; Beta-galactosidase trimerisation domain
YP_003508579.1	PFAM: glycoside hydrolase clan GH-D; SPTR: A7BBW4 Putative uncharacterized protein; InterPro IPR000111; COGs: COG3345 Alpha-galactosidase; KEGG: vha:VIBHAR_01858 alpha-1,6-galactosidase; PFAM: Melibiase
YP_003508580.1	TIGRFAM: galactose-1-phosphate uridylyltransferase; PRIAM: UDP-glucose--hexose-1-phosphate uridylyltransferase; PFAM: galactose-1-phosphate uridyl transferase domain protein; InterPro IPR005850:IPR005849:IPR001937; KEGG: gbm:Gbem_4017 galactose-1-phosphate uridylyltransferase; COGs: COG1085 Galactose-1-phosphate uridylyltransferase; SPTR: A3WI39 Galactose-1-phosphate uridylyltransferase; PFAM: Galactose-1-phosphate uridyl transferase, N-terminal domain; Galactose-1-phosphate uridyl transferase, C-terminal domain; TIGRFAM: galactose-1-phosphate uridylyltransferase, family 1
YP_003508581.1	PFAM: peptidase M24; SPTR: A1HM16 Peptidase M24; InterPro IPR000994; COGs: COG0006 Xaa-Pro aminopeptidase; KEGG: gbm:Gbem_4018 peptidase M24; PFAM: metallopeptidase family M24
YP_003508582.1	TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase domain protein; InterProIPR006206:IPR000705:IPR001174:IPR013750:IPR 006204:IPR006203; KEGG: nmu:Nmul_A1938 galactokinase; COGs: COG0153 Galactokinase; SPTR: A1E4A5 Galactokinase; PFAM: GHMP kinases C terminal; GHMP kinases N terminal domain; Galactokinase galactose-binding signature; TIGRFAM: galactokinase
YP_003508583.1	PFAM: LmbE family protein; SPTR: A3TIZ3 Putative uncharacterized protein; InterPro IPR003737; COGs: COG2120 conserved hypothetical protein LmbE homologs; KEGG: bha:BH3320 hypothetical protein; PFAM: GlcNAc-PI de-N-acetylase
YP_003508584.1	PFAM: Hsp33 protein; SPTR: Q5SJV8 33 kDa chaperonin; InterPro IPR000397; COGs: COG1281 Disulfide bond chaperones of the HSP33 family; KEGG: gme:Gmet_0041 HSP33 protein; PFAM: Hsp33 protein
YP_003508585.1	PFAM: HNH endonuclease; SMART: HNH nuclease; InterPro IPR002711:IPR003615; KEGG: sus:Acid_3418 HNH endonuclease; COGs: COG1403 Restriction endonuclease; SPTR: A3IYA0 Putative uncharacterized protein; PFAM: HNH endonuclease
YP_003508586.1	TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: MoeA domain protein domain I and II; MoeA domain protein domain IV; molybdopterin binding domain; InterPro IPR005111:IPR005110:IPR001453; KEGG: mag:amb2865 molybdopterin biosynthesis protein; COGs: COG0303 Molybdopterin biosynthesis enzyme; SPTR: A6AZ32 Molybdopterin biosynthesis protein MoeA; PFAM: MoeA N-terminal region (domain I and II); Probable molybdopterin binding domain; MoeA C-terminal region (domain IV); TIGRFAM: molybdenum cofactor synthesis domain
YP_003508587.1	COGs: COG0513 Superfamily II DNA and RNA helicase; InterProIPR001650:IPR011545:IPR014001:IPR014021:IPR 000629:IPR014014; KEGG: EMB1138 (EMBRYO DEFECTIVE 1138); ATP binding / ATP-dependent helicase; SMART: DEAD-like helicase ; helicase domain protein; SPTR: Q2HUZ8 Helicase, C-terminal; Zinc finger, CCHC-type; GUCT; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; PFAM: DEAD/DEAH box helicase; Helicase conserved C-terminal domain
YP_003508588.1	KEGG: pmu:PM1706 DsbD
YP_003508589.1	PFAM: protein of unknown function DUF112 transmembrane; SPTR: A3JET8 Putative uncharacterized protein; InterPro IPR002823; COGs: COG3333 conserved hypothetical protein; KEGG: pmy:Pmen_1455 hypothetical protein; PFAM: Integral membrane protein DUF112
YP_003508590.1	KEGG: csa:Csal_0725 putative tricarboxylic transport membrane protein; SPTR: A3JQF8 Putative uncharacterized protein
YP_003508591.1	PFAM: conserved hypothetical protein; SPTR: A3VEN8 TctC protein; InterPro IPR005064; COGs: COG3181 conserved hypothetical protein; KEGG: hch:HCH_01639 hypothetical protein; PFAM: Bordetella uptake gene (bug) product
YP_003508592.1	PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; InterPro IPR000524:IPR011711; KEGG: met:M446_1235 GntR family transcriptional regulator; COGs: COG1802 Transcriptional regulators; SPTR: A4EWQ0 Probable transcriptional regulator; PFAM: Bacterial regulatory proteins, gntR family; FCD domain
YP_003508593.1	TIGRFAM: A/G-specific adenine glycosylase; PFAM: HhH-GPD family protein; helix-hairpin-helix motif; SMART: HhH-GPD family protein; iron-sulfur cluster loop; SPTR: A6G959 A/G-specific adenine glycosylase; KEGG: mno:Mnod_7652 A/G-specific adenine glycosylase; COGs: COG1194 A/G-specific DNA glycosylase; InterProIPR000445:IPR003265:IPR003651:IPR004035:IPR 004036:IPR005760; PFAM: Helix-hairpin-helix motif; Iron-sulfur binding domain of endonuclease III; TIGRFAM: A/G-specific adenine glycosylase
YP_003508594.1	SPTR: A6G801 Putative uncharacterized protein; COGs: COG1832 CoA-binding protein; KEGG: scl:sce5247 hypothetical protein
YP_003508595.1	KEGG: bat:BAS4262 ankyrin repeat-containing protein; SPTR: A4CNQ3 Group-specific protein; PFAM: Ankyrin repeat
YP_003508596.1	PFAM: metallophosphoesterase; InterPro IPR004843; KEGG: bcy:Bcer98_2046 metallophosphoesterase; SPTR: A7CV74 Metallophosphoesterase; PFAM: Calcineurin-like phosphoesterase; TIGRFAM: phosphoesterase, MJ0936 family
YP_003508598.1	PFAM: Ig family protein; InterPro IPR008009:IPR002048; KEGG: bbt:BBta_0237 OmpA family protein; SPTR: B8A6X3 Putative uncharacterized protein; PFAM: Putative Ig domain
YP_003508599.1	TIGRFAM: deoxycytidine triphosphate deaminase; SPTR: Q2N7F4 Deoxycytidine triphosphate deaminase; InterPro IPR011962; COGs: COG0717 Deoxycytidine deaminase; KEGG: eli:ELI_11475 deoxycytidine triphosphate deaminase; TIGRFAM: deoxycytidine triphosphate deaminase
YP_003508600.1	PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; SPTR: A8CU56 Peptidyl-prolyl cis-trans isomerase; InterPro IPR002130; COGs: COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; KEGG: mxa:MXAN_3764 peptidylprolyl cis-trans isomerase, cyclophilin-type; PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
YP_003508601.1	TIGRFAM: histidyl-tRNA synthetase 2; PRIAM: Histidine--tRNA ligase; PFAM: tRNA synthetase class II (G H P and S); InterPro IPR002314:IPR006195:IPR004517; KEGG: gme:Gmet_3259 ATP phosphoribosyltransferase regulatory subunit; COGs: COG3705 ATP phosphoribosyltransferase involved in histidine biosynthesis; SPTR: Q5SM14 ATP phosphoribosyltransferase regulatory subunit; PFAM: tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: ATP phosphoribosyltransferase, regulatory subunit
YP_003508602.1	PFAM: glucose-inhibited division protein A; SPTR: Q899S1 tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG; InterPro IPR013027:IPR000103:IPR002218; COGs: COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division; KEGG: dal:Dalk_2635 glucose inhibited division protein A; PFAM: Glucose inhibited division protein A
YP_003508603.1	SPTR: A3WXX1 Periplasmic solute binding protein; KEGG: azo:azo0640 putative manganese transport system, periplasmic-binding protein; PFAM: periplasmic solute binding protein; InterPro IPR006129:IPR006128:IPR006127; COGs: COG0803 ABC-type metal ion transport system periplasmic component/surface adhesin; PFAM: Periplasmic solute binding protein family
YP_003508604.1	KEGG: mes:Meso_4007 hypothetical protein; SPTR: A4CEB5 Putative lipoprotein
YP_003508605.1	PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; SPTR: A6CTD5 Putative uncharacterized protein; InterPro IPR011629:IPR003495; COGs: COG0523 Putative GTPase (G3E family); KEGG: bha:BH1790 hypothetical protein; PFAM: CobW/HypB/UreG, nucleotide-binding domain; Cobalamin synthesis protein cobW C-terminal domain
YP_003508606.1	TIGRFAM: arginine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; InterPro IPR002985:IPR000183; KEGG: ade:Adeh_1896 arginine decarboxylase; COGs: COG1166 Arginine decarboxylase (spermidine biosynthesis); SPTR: Q9RXR4 Biosynthetic arginine decarboxylase; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; TIGRFAM: arginine decarboxylase, biosynthetic
YP_003508607.1	PFAM: Domain of unknown function DUF1905; InterPro IPR015018; KEGG: mlo:mll8276 hypothetical protein; SPTR: A0P1Z6 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF1905)
YP_003508608.1	PFAM: DinB family protein; InterPro IPR007837; KEGG: bcb:BCB4264_A5237 protein DinB; PFAM: DinB family
YP_003508609.1	PFAM: glutamine synthetase catalytic region; SPTR: A6C110 Glutamine synthetase, type III; InterPro IPR008146; COGs: COG3968 Uncharacterized protein related to glutamine synthetase; KEGG: dde:Dde_0102 glutamine synthetase, type III; PFAM: Glutamine synthetase, catalytic domain
YP_003508610.1	PFAM: NUDIX hydrolase; SPTR: A6G608 Hydrolase, NUDIX family protein; InterPro IPR000086; COGs: COG1051 ADP-ribose pyrophosphatase; KEGG: mch:Mchl_4337 NUDIX hydrolase; PFAM: NUDIX domain
YP_003508611.1	TIGRFAM: cytidyltransferase-related domain protein; PFAM: NUDIX hydrolase; cytidylyltransferase; InterPro IPR000086:IPR004820:IPR004821; KEGG: cytidyltransferase-related domain protein; COGs: COG1056 Nicotinamide mononucleotide adenylyltransferase; SPTR: A2W3W1 Cytidyltransferase-related; PFAM: NUDIX domain; Cytidylyltransferase; TIGRFAM: cytidyltransferase-related domain
YP_003508612.1	PRIAM: Nicotinamide phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like; InterPro IPR015977; KEGG: sml:Smlt0260 putative nicotinamide phosphoribosyltransferase; COGs: COG1488 Nicotinic acid phosphoribosyltransferase; SPTR: A3RY18 Nicotinamide phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase (NAPRTase) family
YP_003508613.1	TIGRFAM: phosphopentomutase; PRIAM: Phosphopentomutase; PFAM: Phosphopentomutase domain protein; metalloenzyme domain protein; InterPro IPR013553:IPR006124:IPR010045; KEGG: acp:A2cp1_0956 phosphopentomutase; COGs: COG1015 Phosphopentomutase; SPTR: Q9RSI9 Phosphopentomutase; PFAM: Phosphopentomutase N-terminal; Metalloenzyme superfamily; TIGRFAM: phosphopentomutase
YP_003508614.1	PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: A2WA08 Transcriptional regulator; InterPro IPR000847:IPR005119; COGs: COG0583 Transcriptional regulator; KEGG: afr:AFE_2158 transcriptional regulator, LysR family; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family
YP_003508615.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: A6BZA0 Putative uncharacterized protein; InterPro IPR003042:IPR013027; COGs: COG0446 NAD(FAD)-dependent dehydrogenase; KEGG: mxa:MXAN_0181 hypothetical protein; PFAM: Pyridine nucleotide-disulphide oxidoreductase
YP_003508616.1	SMART: Rhodanese domain protein; SPTR: A3ZUM1 Putative uncharacterized protein; PFAM: beta-lactamase domain protein; Rhodanese domain protein; COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR001279:IPR001763:IPR001307:IPR016130; KEGG: bcb:BCB4264_A3523 hydroxyacylglutathione hydrolase; PFAM: Metallo-beta-lactamase superfamily; Rhodanese-like domain
YP_003508617.1	PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; InterPro IPR001763; KEGG: amc:MADE_01624 putative phage shock protein E; COGs: COG0607 Rhodanese-related sulfurtransferase; SPTR: A7CAG6 Rhodanese domain protein; PFAM: Rhodanese-like domain
YP_003508618.1	PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; InterPro IPR001763:IPR001307; KEGG: gme:Gmet_3122 rhodanese-like protein; COGs: COG0607 Rhodanese-related sulfurtransferase; SPTR: Q8PZY8 Putative molybdopterin biosynthesis protein; PFAM: Rhodanese-like domain
YP_003508619.1	PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; InterPro IPR001763; KEGG: tbd:Tbd_0573 rhodanese-like protein; COGs: COG0607 Rhodanese-related sulfurtransferase; SPTR: A7C5N3 Rhodanese-like protein; PFAM: Rhodanese-like domain
YP_003508620.1	PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; InterPro IPR001763; KEGG: prw:PsycPRwf_0809 rhodanese domain-containing protein; COGs: COG0607 Rhodanese-related sulfurtransferase; SPTR: A7LUS3 Putative uncharacterized protein; PFAM: Rhodanese-like domain
YP_003508621.1	PFAM: protein of unknown function DUF81; SPTR: A6BZ98 Putative uncharacterized protein; InterPro IPR002781; COGs: COG0730 permease; KEGG: tcx:Tcr_0174 hypothetical protein; PFAM: Domain of unknown function DUF81
YP_003508622.1	PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: A1BZQ2 Putative cytochrome c biogenesis protein; InterPro IPR006662:IPR000866:IPR013740; COGs: COG0526 Thiol-disulfide isomerase and thioredoxins; KEGG: gbm:Gbem_3412 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Redoxin
YP_003508623.1	SMART: UAS; InterPro IPR006577; KEGG: pol:Bpro_3506 protein-disulfide reductase; SPTR: Q9XDB2 Thiol:disulfide interchange protein dsbD
YP_003508624.1	SPTR: A4U2K4 Putative uncharacterized protein; InterPro IPR006311; COGs: COG5501 secreted protein; KEGG: nis:NIS_1831 sulfur oxidation protein SoxY
YP_003508625.1	PFAM: Sulphur oxidation protein SoxZ; InterPro IPR014880; KEGG: nis:NIS_1830 hypothetical protein; SPTR: A0Y7K9 Putative sulfur oxidation protein soxZ; PFAM: Sulphur oxidation protein SoxZ
YP_003508626.1	KEGG: pne:Pnec_1034 hypothetical protein; SPTR: A7CER4 Putative uncharacterized protein
YP_003508627.1	SPTR: O67672 Uncharacterized lipoprotein aq_1806; InterPro IPR009056; KEGG: har:HEAR1194 SoxX precursor
YP_003508628.1	PFAM: 5'-Nucleotidase domain protein; SPTR: A7CER1 5'-Nucleotidase domain protein; InterPro IPR006179:IPR008334; COGs: COG0737 5'-nucleotidase/2' 3'-cyclic phosphodiesterase and related esterase; KEGG: nis:NIS_1828 sulfur oxidation protein SoxB; PFAM: 5'-nucleotidase, C-terminal domain
YP_003508629.1	InterPro IPR003088:IPR009056; KEGG: dar:Daro_3129 hypothetical protein; SPTR: O67672 Uncharacterized lipoprotein aq_1806; PFAM: cytochrome c class I; PFAM: Cytochrome c
YP_003508630.1	KEGG: lch:Lcho_3780 hypothetical protein; SPTR: A3RTX9 Putative uncharacterized protein
YP_003508631.1	PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; InterPro IPR001763; KEGG: dar:Daro_0611 rhodanese-like protein; COGs: COG0607 Rhodanese-related sulfurtransferase; SPTR: Q12VR2 Rhodanese-like protein; PFAM: Rhodanese-like domain
YP_003508633.1	PFAM: Flavocytochrome c sulphide dehydrogenase flavin-binding; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: A4TTR0 Twin-arginine translocation pathway signal; InterPro IPR013027:IPR015323:IPR006311; COGs: COG0446 NAD(FAD)-dependent dehydrogenase; KEGG: dar:Daro_1813 sulfide dehydrogenase (flavocytochrome), flavoprotein subunit; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Flavocytochrome c sulphide dehydrogenase, flavin-binding; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence
YP_003508634.1	PRIAM: Nitrate reductase (NADH); PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; InterPro IPR008335:IPR000572:IPR005066; KEGG: mno:Mnod_8677 oxidoreductase molybdopterin binding; COGs: COG2041 Sulfite oxidase; SPTR: A0NXV4 Probable sulfite oxidase molybdopterin subunit; PFAM: Mo-co oxidoreductase dimerisation domain; Oxidoreductase molybdopterin binding domain
YP_003508635.1	PFAM: cytochrome c class I; InterPro IPR003088:IPR009056; KEGG: cti:RALTA_B1994 putative cytochrome c, class I precursor; SPTR: A2W543 Cytochrome c, class I; PFAM: Cytochrome c
YP_003508636.1	PFAM: Rieske [2Fe-2S] domain protein; SPTR: A4YE25 Rieske (2Fe-2S) domain protein; InterPro IPR005806; COGs: COG0723 Rieske Fe-S protein; KEGG: nis:NIS_0033 sulfur oxidation protein, Rieske-I iron sulfur protein SoxL; PFAM: Rieske [2Fe-2S] domain
YP_003508637.1	PFAM: cytochrome c biogenesis protein transmembrane region; SPTR: A3TSG9 CcdA, cytochrome c-type biogenesis protein CdcA; InterPro IPR003834; COGs: COG0785 Cytochrome c biogenesis protein; KEGG: mgm:Mmc1_0245 cytochrome c biogenesis protein, transmembrane region; PFAM: Cytochrome C biogenesis protein transmembrane region
YP_003508638.1	PFAM: protein of unknown function DUF156; SPTR: A3IKV8 Putative uncharacterized protein; InterPro IPR003735; COGs: COG1937 conserved hypothetical protein; KEGG: dde:Dde_0676 hypothetical protein; PFAM: Uncharacterised BCR, COG1937
YP_003508639.1	PFAM: cytochrome c class I; InterPro IPR003088:IPR009056; KEGG: swi:Swit_4366 cytochrome c, class I; SPTR: Q5SME3 Cytochrome c-552; PFAM: Cytochrome c
YP_003508640.1	TIGRFAM: fructose-1,6-bisphosphate aldolase, class II; ketose-bisphosphate aldolase; PRIAM: Fructose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II; InterPro IPR000771:IPR011289; KEGG: wsu:WS1280 fructose-bisphosphate aldolase; COGs: COG0191 Fructose/tagatose bisphosphate aldolase; SPTR: Q703I2 Fructose-bisphosphate aldolase; PFAM: Fructose-bisphosphate aldolase class-II; TIGRFAM: fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist; ketose-bisphosphate aldolases
YP_003508641.1	TIGRFAM: ribulose-phosphate 3-epimerase; PRIAM: Ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; InterPro IPR000056; KEGG: glo:Glov_3613 ribulose-phosphate 3-epimerase; COGs: COG0036 Pentose-5-phosphate-3-epimerase; SPTR: A3YZZ9 Ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3 epimerase family; TIGRFAM: ribulose-phosphate 3-epimerase
YP_003508642.1	PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: A7UH62 Putative LysR family regulator; InterPro IPR000847:IPR005119; COGs: COG0583 Transcriptional regulator; KEGG: sus:Acid_6667 LysR family transcriptional regulator; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain
YP_003508643.1	COGs: COG4949 Uncharacterized membrane-anchored protein; KEGG: pna:Pnap_2555 hypothetical protein; SPTR: A4TXY2 Putative uncharacterized protein
YP_003508645.1	PFAM: C4-dicarboxylate transporter/malic acid transport protein; SPTR: O29900 C4-dicarboxylate transporter (Mae1); InterPro IPR004695; COGs: COG1275 Tellurite resistance protein and related permease; KEGG: rce:RC1_0015 C4-dicarboxylate transporter; PFAM: C4-dicarboxylate transporter/malic acid transport protein; TIGRFAM: C4-dicarboxylate transporter/malic acid transport protein
YP_003508646.1	TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; FAD dependent oxidoreductase; HI0933 family protein; SPTR: A3WY92 Thioredoxin reductase; KEGG: bha:BH3571 thioredoxin reductase (NADPH); COGs: COG0492 Thioredoxin reductase; InterProIPR000759:IPR013027:IPR000103:IPR001327:IPR 002218:IPR006076:IPR004792:IPR008255:IPR005982; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: thioredoxin-disulfide reductase
YP_003508648.1	PFAM: protein of unknown function DUF461; SPTR: A3XT29 Uncharacterized protein conserved in bacteria; InterPro IPR007410; COGs: COG2847 conserved hypothetical protein; KEGG: lch:Lcho_1996 hypothetical protein; PFAM: Protein of unknown function (DUF461)
YP_003508650.1	PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; InterPro IPR006662:IPR000866:IPR013740:IPR017937; KEGG: dac:Daci_4240 redoxin domain-containing protein; SPTR: A3KUN8 Putative uncharacterized protein; PFAM: Redoxin
YP_003508651.1	PFAM: protein of unknown function DUF156; SPTR: A6CTX6 Putative uncharacterized protein; InterPro IPR003735; COGs: COG1937 conserved hypothetical protein; KEGG: bca:BCE_0865 hypothetical protein; PFAM: Uncharacterised BCR, COG1937
YP_003508652.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PRIAM: Calcium-transporting ATPase; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; InterProIPR000695:IPR001757:IPR006068:IPR008250:IPR 005834:IPR004014; KEGG: mno:Mnod_8720 ATPase, P-type (transporting), HAD superfamily, subfamily IC; COGs: COG0474 Cation transport ATPase; SPTR: P37278 Probable calcium-transporting ATPase; PFAM: haloacid dehalogenase-like hydrolase; Cation transporting ATPase, C-terminus; Cation transporter/ATPase, N-terminus; E1-E2 ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; plasma-membrane calcium-translocating P-type ATPase
YP_003508653.1	PFAM: UspA domain protein; SPTR: Q3IS84 Probable stress response protein; InterPro IPR006015:IPR006016; COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; KEGG: net:Neut_1683 UspA domain-containing protein; PFAM: Universal stress protein family
YP_003508654.1	PFAM: UspA domain protein; SPTR: A7D6B0 UspA domain protein; InterPro IPR006015:IPR006016; COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; KEGG: bph:Bphy_5818 UspA domain-containing protein; PFAM: Universal stress protein family
YP_003508655.1	TIGRFAM: pyridoxamine 5'-phosphate oxidase; PRIAM: Pyridoxal 5'-phosphate synthase; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; InterPro IPR011576:IPR000659; KEGG: cvi:CV_0059 pyridoxamine 5'-phosphate oxidase; COGs: COG0259 Pyridoxamine-phosphate oxidase; SPTR: Q7P203 Pyridoxine/pyridoxamine 5'-phosphate oxidase; PFAM: Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region; Pyridoxamine 5'-phosphate oxidase; TIGRFAM: pyridoxamine-phosphate oxidase
YP_003508656.1	PFAM: protein of unknown function DUF45; SPTR: Q0W5N7 Putative uncharacterized protein; InterPro IPR002725; COGs: COG1451 metal-dependent hydrolase; KEGG: bcs:BCAN_B0859 hypothetical protein; PFAM: Protein of unknown function DUF45
YP_003508657.1	PRIAM: Glycerol-3-phosphate dehydrogenase; PFAM: FAD dependent oxidoreductase; InterPro IPR000447:IPR006076; KEGG: bid:Bind_0378 FAD dependent oxidoreductase; COGs: COG0578 Glycerol-3-phosphate dehydrogenase; SPTR: B0CWX9 Predicted protein; PFAM: FAD dependent oxidoreductase
YP_003508658.1	PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593:IPR017871; KEGG: mxa:MXAN_6003 ABC transporter, ATP-binding protein; COGs: COG4586 ABC-type uncharacterized transport system ATPase component; SPTR: A0ZBV8 ABC transporter-like protein; PFAM: ABC transporter
YP_003508659.1	PFAM: phosphoribosyltransferase; SPTR: A0ZIN7 Putative uncharacterized protein; InterPro IPR000836; COGs: COG1926 phosphoribosyltransferase; KEGG: pna:Pnap_2186 erythromycin esterase; PFAM: Phosphoribosyl transferase domain
YP_003508660.1	COGs: COG1505 Serine protease of the peptidase family S9A; InterPro IPR002470:IPR001375:IPR004106; KEGG: saz:Sama_2091 prolyl oligopeptidase; PFAM: peptidase S9A prolyl oligopeptidase domain protein beta-propeller; peptidase S9 prolyl oligopeptidase active site domain protein; SPTR: A0YM37 Prolyl endopeptidase; PRIAM: Prolyl oligopeptidase; PFAM: Prolyl oligopeptidase family; Prolyl oligopeptidase, N-terminal beta-propeller domain
YP_003508661.1	PFAM: protein of unknown function DUF6 transmembrane; InterPro IPR000620; KEGG: ajs:Ajs_0243 hypothetical protein; SPTR: A9SM62 Predicted protein; PFAM: Integral membrane protein DUF6
YP_003508662.1	PFAM: UspA domain protein; InterPro IPR006016; KEGG: pna:Pnap_2306 UspA domain protein; PFAM: Universal stress protein family
YP_003508663.1	PFAM: transcriptional activator domain; SPTR: A7YVV0 Putative regulatory protein; InterPro IPR005158:IPR013026; COGs: COG3947 Response regulator containing CheY-like receiver and SARP domains; KEGG: neu:NE1994 TPR repeat-containing protein; PFAM: Bacterial transcriptional activator domain
YP_003508664.1	KEGG: sus:Acid_2543 eRF1 domain-containing protein; SPTR: Q64E75 Peptide chain release factor
YP_003508665.1	PFAM: heat shock protein Hsp20; SPTR: A6BYP2 Small heat shock protein; InterPro IPR002068; COGs: COG0071 Molecular chaperone (small heat shock protein); KEGG: gsu:GSU0538 HSP20 family protein; PFAM: Hsp20/alpha crystallin family
YP_003508666.1	KEGG: sde:Sde_2765 TonB-dependent siderophore receptor
YP_003508667.1	KEGG: maq:Maqu_0584 regulatory protein, MarR; SPTR: A6GDB6 Putative uncharacterized protein
YP_003508668.1	PFAM: protein of unknown function DUF214; SPTR: A6GD66 Putative uncharacterized protein; InterPro IPR003838; COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; KEGG: dal:Dalk_0595 protein of unknown function DUF214; PFAM: Predicted permease
YP_003508669.1	KEGG: dal:Dalk_0596 hypothetical protein; SPTR: A4AE74 Putative uncharacterized protein
YP_003508670.1	PFAM: protein of unknown function DUF214; SPTR: A7CK40 Putative uncharacterized protein; InterPro IPR003838; COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; KEGG: slo:Shew_2659 hypothetical protein; PFAM: Predicted permease
YP_003508671.1	PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593:IPR017871; KEGG: rpi:Rpic_1662 ABC transporter related; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; SPTR: A7CK39 ABC transporter related; PFAM: ABC transporter
YP_003508673.1	PFAM: Phosphoglycerate mutase; SPTR: Q4DL01 Phosphoglycerate mutase protein, putative; InterPro IPR013078; COGs: COG0406 Fructose-2 6-bisphosphatase; KEGG: bcz:BCZK1881 phosphoglycerate mutase; PFAM: Phosphoglycerate mutase family
YP_003508674.1	PFAM: alpha amylase catalytic region; glycoside hydrolase family 13 domain protein; SMART: alpha amylase catalytic sub domain; InterPro IPR004193:IPR006047:IPR006589; KEGG: bha:BH2927 maltogenic amylase; COGs: COG0366 Glycosidase; SPTR: Q9P9A0 Pullulan hydrolase type III; PFAM: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Alpha amylase, catalytic domain
YP_003508675.1	PFAM: protein of unknown function DUF6 transmembrane; InterPro IPR000620; KEGG: dal:Dalk_4375 protein of unknown function DUF6 transmembrane; SPTR: B6YV33 Permease; PFAM: Integral membrane protein DUF6
YP_003508677.1	PRIAM: Glycine hydroxymethyltransferase; PFAM: glycine hydroxymethyltransferase; aminotransferase class I and II; InterPro IPR001085:IPR004839; KEGG: sfu:Sfum_1377 glycine hydroxymethyltransferase; COGs: COG0112 Glycine/serine hydroxymethyltransferase; SPTR: Q1J1W0 Serine hydroxymethyltransferase; PFAM: Aminotransferase class I and II
YP_003508678.1	KEGG: mmw:Mmwyl1_2919 hypothetical protein; SPTR: A4BG16 Putative uncharacterized protein; InterPro IPR002345:IPR012668; TIGRFAM: conserved hypothetical protein
YP_003508680.1	TIGRFAM: 4-aminobutyrate aminotransferase; PRIAM: (S)-3-amino-2-methylpropionate transaminase; PFAM: aminotransferase class-III; InterPro IPR005814:IPR004632; KEGG: pst:PSPTO_0259 4-aminobutyrate aminotransferase; COGs: COG0160 4-aminobutyrate aminotransferase and related aminotransferase; SPTR: A3S9F3 4-aminobutyrate aminotransferase; PFAM: Aminotransferase class-III; TIGRFAM: 4-aminobutyrate aminotransferase, prokaryotic type
YP_003508684.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; InterPro IPR003439:IPR013611:IPR003593:IPR017871; KEGG: scl:sce9160 spermidine/putrescine transport system ATP-binding protein; COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; SPTR: Q0AGF4 Spermidine/putrescine import ATP-binding protein potA; PFAM: ABC transporter; TOBE domain
YP_003508685.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A0YI63 Spermidine/putrescine ABC transporter, permease protein; InterPro IPR000515; COGs: COG1176 ABC-type spermidine/putrescine transport system permease component I; KEGG: scl:sce9159 spermidine/putrescine transport system permease protein; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003508686.1	PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A0YI64 Polyamine transport protein PotC; InterPro IPR000515; COGs: COG1177 ABC-type spermidine/putrescine transport system permease component II; KEGG: scl:sce9158 spermidine/putrescine ABC transporter, permease protein; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003508687.1	PFAM: extracellular solute-binding protein family 1; SPTR: A0YI65 Spermidine/putrescine ABC transporter spermidine/putrescine-binding protein; InterPro IPR001188:IPR006059; COGs: COG0687 Spermidine/putrescine-binding periplasmic protein; KEGG: scl:sce9153 spermidine/putrescine transport system substrate-binding protein; PFAM: Bacterial extracellular solute-binding protein
YP_003508689.1	PFAM: beta-lactamase; SPTR: A4A5U4 Beta-lactamase family protein; InterPro IPR001466; COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; KEGG: hne:HNE_0914 beta-lactamase; PFAM: Beta-lactamase
YP_003508690.1	TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; InterPro IPR005814:IPR004632; KEGG: aba:Acid345_1534 4-aminobutyrate aminotransferase; COGs: COG0160 4-aminobutyrate aminotransferase and related aminotransferase; SPTR: P63504 4-aminobutyrate aminotransferase; PFAM: Aminotransferase class-III; TIGRFAM: 4-aminobutyrate aminotransferase, prokaryotic type
YP_003508691.1	PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; SPTR: A6BWG8 Pyridoxal-phosphate dependent enzyme; InterPro IPR001926; COGs: COG1171 Threonine dehydratase; KEGG: yen:YE4167 hypothetical protein; PFAM: Pyridoxal-phosphate dependent enzyme
YP_003508692.1	KEGG: tgr:Tgr7_0656 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: A6CGS7 Putative uncharacterized protein
YP_003508693.1	PRIAM: DNA topoisomerase (ATP-hydrolyzing); PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; DNA gyrase subunit B domain protein; TOPRIM domain protein; ATP-binding region ATPase domain protein; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; InterProIPR001241:IPR000565:IPR002288:IPR006171:IPR 003594:IPR013506; KEGG: bha:BH0006 DNA gyrase subunit B; COGs: COG0187 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit; SPTR: A3IAV4 DNA gyrase subunit B; PFAM: DNA gyrase B subunit, carboxyl terminus; DNA gyrase B; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Toprim domain; TIGRFAM: DNA gyrase, B subunit
YP_003508695.1	PFAM: Amidase; SPTR: A6BZ97 Amidase; InterPro IPR000120; COGs: COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidase; KEGG: smt:Smal_0786 amidase; PFAM: Amidase
YP_003508696.1	KEGG: bte:BTH_II1254 nitrate/nitrite transporter
YP_003508697.1	SPTR: A3IQA8 Putative uncharacterized protein; COGs: COG4370 conserved hypothetical protein; KEGG: hypothetical protein; TIGRFAM: conserved hypothetical protein
YP_003508698.1	TIGRFAM: anthranilate phosphoribosyltransferase; PRIAM: Anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; Glycosyl transferase, family 3-like; InterPro IPR000312:IPR017459:IPR005940; KEGG: dol:Dole_1567 anthranilate phosphoribosyltransferase; COGs: COG0547 Anthranilate phosphoribosyltransferase; SPTR: P83827 Anthranilate phosphoribosyltransferase; PFAM: Glycosyl transferase family, a/b domain; Glycosyl transferase family, helical bundle domain; TIGRFAM: anthranilate phosphoribosyltransferase
YP_003508699.1	PFAM: glycosyl transferase family 2; SPTR: A4BNE9 Rhamnosyl transferase related protein; KEGG: gme:Gmet_2884 glycosyl transferase family protein; COGs: COG1216 glycosyltransferase; InterPro IPR001173; PFAM: Glycosyl transferase family 2
YP_003508700.1	PFAM: glycosyl transferase family 2; SPTR: A0YSS8 Putative uncharacterized protein; InterPro IPR001173; COGs: COG1216 glycosyltransferase; KEGG: sde:Sde_3802 glucosyltransferase; PFAM: Glycosyl transferase family 2
YP_003508701.1	PFAM: glycosyl transferase family 2; SPTR: A3IVV9 Glycosyl transferase, family 2; InterPro IPR001173; COGs: COG1216 glycosyltransferase; KEGG: dvu:DVU2993 glycosyl transferase, group 1/2 family protein; PFAM: Glycosyl transferase family 2
YP_003508702.1	PFAM: PilT protein domain protein; SPTR: A7BYI7 PilT-like protein; InterPro IPR002716; COGs: COG1487 nucleic acid-binding protein contains PIN domain; KEGG: gur:Gura_1138 PilT domain-containing protein; PFAM: PIN domain
YP_003508704.1	TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; InterProIPR006220:IPR011702:IPR001317:IPR000991:IPR 006221; KEGG: gbm:Gbem_1955 glutamine amidotransferase of anthranilate synthase; COGs: COG0512 Anthranilate/para-aminobenzoate synthase component II; SPTR: P05379 Anthranilate synthase component II; PFAM: Glutamine amidotransferase class-I; TIGRFAM: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
YP_003508705.1	PFAM: Chorismate mutase; InterPro IPR002701; KEGG: nis:NIS_0982 chorismate mutase; SPTR: A4U2L1 Chorismate mutase; PFAM: Chorismate mutase type II
YP_003508706.1	TIGRFAM: anthranilate synthase component I; PRIAM: Anthranilate synthase; PFAM: Chorismate binding-like; Anthranilate synthase component I domain protein; InterPro IPR005801:IPR006805:IPR015890:IPR005256; KEGG: gme:Gmet_2497 anthranilate synthase, component I; COGs: COG0147 Anthranilate/para-aminobenzoate synthase component I; SPTR: P05378 Anthranilate synthase component 1; PFAM: Anthranilate synthase component I, N terminal region; chorismate binding enzyme; TIGRFAM: anthranilate synthase component I, non-proteobacterial lineages; aminodeoxychorismate synthase, component I, clade 2
YP_003508707.1	PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: B6YTD6 Hydrolase; InterPro IPR005833:IPR005834; COGs: COG1011 hydrolase (HAD superfamily); KEGG: pae:PA5281 putative hydrolase; PFAM: haloacid dehalogenase-like hydrolase
YP_003508708.1	PFAM: 2-nitropropane dioxygenase NPD; SPTR: A8EH25 Oxidoreductase, 2-nitropropane dioxygenase family; InterPro IPR004136; COGs: COG2070 Dioxygenase related to 2-nitropropane dioxygenase; KEGG: ajs:Ajs_0188 2-nitropropane dioxygenase, NPD; PFAM: 2-nitropropane dioxygenase
YP_003508709.1	PFAM: major facilitator superfamily MFS_1; SPTR: A3RSS5 Probable transmembrane transporter protein, MFS family; InterPro IPR011701:IPR007114; COGs: COG2271 Sugar phosphate permease; KEGG: bpt:Bpet2649 putative transmembrane transport protein; PFAM: Major Facilitator Superfamily
YP_003508710.1	PFAM: DSBA oxidoreductase; SPTR: Q5L1S1 UPF0413 protein GK0824; InterPro IPR001853; COGs: COG2761 dithiol-disulfide isomerase involved in polyketide biosynthesis; KEGG: rce:RC1_0931 DsbA oxidoreductase, putative; PFAM: DSBA-like thioredoxin domain
YP_003508711.1	TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; PRIAM: N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase NAD - binding; InterPro IPR000534:IPR000706:IPR010136; KEGG: pzu:PHZ_c1651 N-acetyl-gamma-glutamyl-phosphate reductase; COGs: COG0002 Acetylglutamate semialdehyde dehydrogenase; SPTR: Q1IXY5 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form
YP_003508712.1	TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; InterProIPR002082:IPR006130:IPR002292:IPR006132:IPR 006131; KEGG: aba:Acid345_1819 ornithine carbamoyltransferase; COGs: COG0078 Ornithine carbamoyltransferase; SPTR: Q9RY70 Ornithine carbamoyltransferase; PFAM: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; TIGRFAM: ornithine carbamoyltransferase
YP_003508713.1	TIGRFAM: purine nucleoside phosphorylase; PFAM: purine or other phosphorylase family 1; InterPro IPR000845:IPR004402; KEGG: bcy:Bcer98_1187 purine nucleoside phosphorylase; COGs: COG0813 Purine-nucleoside phosphorylase; SPTR: Q8R973 Purine nucleoside phosphorylase deoD-type; PFAM: Phosphorylase superfamily; TIGRFAM: purine-nucleoside phosphorylase, family 1 (deoD)
YP_003508714.1	PFAM: aminodeoxychorismate lyase; SPTR: A6ZIL0 Bioflim formation-related protein 3; InterPro IPR003770; COGs: COG1559 periplasmic solute-binding protein; KEGG: glo:Glov_2459 aminodeoxychorismate lyase; PFAM: Aminodeoxychorismate lyase; TIGRFAM: conserved hypothetical protein TIGR00247
YP_003508715.1	PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; InterPro IPR005227:IPR006641; KEGG: scl:sce4544 putative Hollyday junction resolvase; COGs: COG0816 endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis); SPTR: Q5SHA1 Putative Holliday junction resolvase; PFAM: Uncharacterised protein family (UPF0081); TIGRFAM: conserved hypothetical protein TIGR00250
YP_003508716.1	TIGRFAM: alanyl-tRNA synthetase; PRIAM: Alanine--tRNA ligase; PFAM: alanyl-tRNA synthetase class IIc; phosphoesterase DHHA1; Threonyl/alanyl tRNA synthetase SAD; InterPro IPR002318:IPR003156:IPR012947; KEGG: bsu:BSU27410 alanyl-tRNA synthetase; COGs: COG0013 Alanyl-tRNA synthetase; SPTR: P74941 Alanyl-tRNA synthetase; PFAM: DHHA1 domain; tRNA synthetases class II (A); Threonyl and Alanyl tRNA synthetase second additional domain; TIGRFAM: alanyl-tRNA synthetase
YP_003508717.1	SPTR: A0MN35 IMP dehydrogenase/GMP reductase; InterPro IPR015875; KEGG: pub:SAR11_0649 IMP dehydrogenase-like protein; PFAM: IMP dehydrogenase / GMP reductase domain
YP_003508718.1	KEGG: sus:Acid_2155 hypothetical protein; SPTR: A6C0A7 IG hypothetical 18565
YP_003508719.1	PFAM: major facilitator superfamily MFS_1; SPTR: Q54XU7 Putative uncharacterized protein; InterPro IPR011701:IPR007114; COGs: COG2270 Permease of the major facilitator superfamily; KEGG: hypothetical protein; PFAM: Major Facilitator Superfamily
YP_003508720.1	TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; InterPro IPR007197:IPR004383; KEGG: hha:Hhal_1791 radical SAM enzyme, Cfr family; COGs: COG0820 Fe-S-cluster redox enzyme; SPTR: Q5SGZ3 Ribosomal RNA large subunit methyltransferase N; PFAM: Radical SAM superfamily; TIGRFAM: radical SAM enzyme, Cfr family
YP_003508721.1	PFAM: peptidylprolyl isomerase FKBP-type; SPTR: A4CW71 Peptidyl-prolyl cis-trans isomerase; InterPro IPR001179; COGs: COG0545 FKBP-type peptidyl-prolyl cis-trans isomerase 1; KEGG: ade:Adeh_2074 peptidylprolyl isomerase, FKBP-type; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase
YP_003508722.1	InterPro IPR005337; PFAM: conserved hypothetical protein; COGs: COG1660 P-loop-containing kinase; KEGG: bcb:BCB4264_A5274 hypothetical protein; SPTR: Q72H31 UPF0042 protein TT_C1664; PFAM: P-loop ATPase protein family
YP_003508723.1	PFAM: protein of unknown function UPF0052 and CofD; SPTR: Q9RUF1 UPF0052 protein DR_1435; InterPro IPR002882:IPR010119; COGs: COG0391 conserved hypothetical protein; KEGG: bsu:BSU34760 hypothetical protein; PFAM: Uncharacterised protein family UPF0052; TIGRFAM: conserved hypothetical protein, cofD-related
YP_003508724.1	SPTR: Q3HUR3 Amylopullulanase; COGs: COG4945 Membrane-anchored protein predicted to be involved in regulation of amylopullulanase; KEGG: acp:A2cp1_4286 membrane-anchored protein; PFAM: Domain of unknown function (DUF2223)
YP_003508725.1	PFAM: membrane protein of unknown function; SPTR: A7CCM1 Putative uncharacterized protein; InterPro IPR007165; COGs: COG1950 membrane protein; KEGG: gme:Gmet_3555 membrane protein of unknown function; PFAM: Membrane protein of unknown function
YP_003508726.1	PFAM: CBS domain containing protein; SMART: CBS domain containing protein; InterPro IPR000644; KEGG: mfa:Mfla_2360 signal-transduction protein; COGs: COG2905 signal-transduction protein containing cAMP-binding and CBS domains; SPTR: A5XKP3 CBS domain protein; PFAM: CBS domain pair
YP_003508727.1	PFAM: major facilitator superfamily MFS_1; SPTR: Q0W691 Putative permease (Major facilitator superfamily); InterPro IPR011701:IPR007114:IPR005829; COGs: COG2814 Arabinose efflux permease; KEGG: csa:Csal_0994 major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily
YP_003508728.1	InterPro IPR013838
YP_003508729.1	PFAM: major facilitator superfamily MFS_1; General substrate transporter; protein of unknown function DUF1228; SPTR: A3LM23 Putative uncharacterized protein; InterPro IPR010645:IPR005828:IPR011701:IPR007114; COGs: COG2271 Sugar phosphate permease; KEGG: pap:PSPA7_4707 MFS family transporter; PFAM: Major Facilitator Superfamily
YP_003508730.1	PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593:IPR017871; KEGG: mfa:Mfla_1251 ABC transporter related; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; SPTR: A7VV19 Putative uncharacterized protein; PFAM: ABC transporter
YP_003508731.1	PFAM: protein of unknown function DUF214; SPTR: Q8PWH7 ABC transporter, permease protein; InterPro IPR003838; COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; KEGG: gur:Gura_1127 hypothetical protein; PFAM: Predicted permease
YP_003508732.1	SPTR: Q4FWS4 Ribosomal protein L32-like protein; COGs: COG1611 Rossmann fold nucleotide-binding protein; KEGG: ribosomal protein L32-like protein; PFAM: Possible lysine decarboxylase; TIGRFAM: conserved hypothetical protein, DprA/Smf-related, family 1; conserved hypothetical protein, DprA/Smf-related, family 2
YP_003508733.1	PFAM: YceI family protein; SPTR: A2A0B6 YceI; InterPro IPR007372; COGs: COG2353 conserved hypothetical protein; KEGG: pen:PSEEN5043 hypothetical protein; PFAM: YceI-like domain
YP_003508735.1	PFAM: protein of unknown function DUF214; SPTR: A1HTE5 Putative uncharacterized protein; InterPro IPR003838; COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; KEGG: dal:Dalk_4858 protein of unknown function DUF214; PFAM: Predicted permease
YP_003508736.1	PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593:IPR017871; KEGG: saz:Sama_1468 putative macrolide efflux ABC transporter, ATP-binding protein; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; SPTR: A3I312 ATP-binding protein of ABC transporter; PFAM: ABC transporter
YP_003508737.1	KEGG: aba:Acid345_3531 secretion protein HlyD; COGs: COG1566 Multidrug resistance efflux pump; SPTR: A3ILM3 Secretion protein HlyD; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; InterPro IPR003997:IPR006143; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit
YP_003508739.1	PFAM: Abortive infection protein; InterPro IPR003675; KEGG: pfo:Pfl01_1834 abortive infection protein; PFAM: CAAX amino terminal protease family
YP_003508740.1	PFAM: outer membrane efflux protein; InterPro IPR003423; KEGG: mms:mma_1681 outer membrane protein, TolC-like; SPTR: A2WHZ0 Outer membrane protein; PFAM: Outer membrane efflux protein
YP_003508741.1	PFAM: outer membrane efflux protein; SPTR: A1HRF7 Outer membrane efflux protein; KEGG: vei:Veis_2352 type I secretion outer membrane protein, TolC family; COGs: COG1538 Outer membrane protein; InterPro IPR003423; PFAM: Outer membrane efflux protein
YP_003508742.1	PFAM: beta-lactamase domain protein; SPTR: A1ZJB6 Metallo-beta-lactamase protein; InterPro IPR001279; COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: hha:Hhal_0136 beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily
YP_003508743.1	PFAM: peptidase M20; peptidase dimerisation domain protein; SPTR: A9A499 Peptidase M20; InterPro IPR011650:IPR002933; COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; KEGG: bra:BRADO5521 M20/M25/M40 family peptidase; PFAM: Peptidase family M20/M25/M40
YP_003508744.1	PFAM: RES domain protein; SPTR: A3YY86 Putative uncharacterized protein; InterPro IPR014914; COGs: COG5654 conserved hypothetical protein; KEGG: ajs:Ajs_0567 hypothetical protein; PFAM: RES domain
YP_003508745.1	SPTR: A3YY85 Putative uncharacterized protein; InterPro IPR011979; KEGG: nmu:Nmul_A0917 hypothetical protein; PFAM: Protein of unknown function (DUF2384); TIGRFAM: conserved hypothetical protein TIGR02293
YP_003508746.1	PFAM: AMP-dependent synthetase and ligase; SPTR: A6G568 AMP-dependent synthetase and ligase; InterPro IPR000873; COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; KEGG: mxa:MXAN_6374 medium-chain fatty acid--CoA ligase; PFAM: AMP-binding enzyme
YP_003508747.1	PFAM: beta-lactamase domain protein; SPTR: A6FQ29 1-deoxy-D-xylulose-5-phosphate synthase; InterPro IPR001279:IPR006311; COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: ret:RHE_CH00793 putative beta-lactamase family protein; PFAM: Metallo-beta-lactamase superfamily
YP_003508748.1	InterPro IPR007581; PRIAM: Deoxyribonuclease V; COGs: COG1515 Deoxyinosine 3'endonuclease (endonuclease V); SPTR: Q5SIM2 Endonuclease V; KEGG: rce:RC1_2698 endonuclease V, putative; PFAM: Endonuclease V; PFAM: Endonuclease V
YP_003508749.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; InterPro IPR000297; KEGG: sfu:Sfum_0568 PpiC-type peptidyl-prolyl cis-trans isomerase; SPTR: A6CMQ7 Post-translocation molecular chaperone; PFAM: PPIC-type PPIASE domain
YP_003508750.1	PRIAM: Nucleoside-diphosphate kinase; PFAM: nucleoside diphosphate kinase; SMART: nucleoside diphosphate kinase; InterPro IPR001564; KEGG: bha:BH1654 nucleoside diphosphate kinase; COGs: COG0105 Nucleoside diphosphate kinase; SPTR: Q5SLV5 Nucleoside diphosphate kinase; PFAM: Nucleoside diphosphate kinase
YP_003508751.1	TIGRFAM: excinuclease ABC, B subunit; PFAM: helicase domain protein; UvrB/UvrC protein; type III restriction protein res subunit; SMART: DEAD-like helicase ; helicase domain protein; InterProIPR001650:IPR001943:IPR006935:IPR014001:IPR 014021:IPR004807; KEGG: gsu:GSU3262 excinuclease ABC subunit B; COGs: COG0556 Helicase subunit of the DNA excision repair complex; SPTR: Q56243 UvrABC system protein B; PFAM: Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit; UvrB/uvrC motif; TIGRFAM: excinuclease ABC, B subunit
YP_003508752.1	InterPro IPR002145; PFAM: CopG domain protein DNA-binding domain protein; PFAM: Ribbon-helix-helix protein, copG family
YP_003508753.1	PFAM: PilT protein domain protein; SPTR: A7BV42 Putative uncharacterized protein; InterPro IPR002716; COGs: COG2402 nucleic acid-binding protein contains PIN domain; KEGG: tmz:Tmz1t_1570 hypothetical protein; PFAM: PIN domain
YP_003508754.1	PFAM: S-layer domain protein; InterPro IPR001119; KEGG: rce:RC1_2365 hypothetical protein; SPTR: Q5SH37 S-layer protein; PFAM: S-layer homology domain
YP_003508755.1	TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase class-II; sugar isomerase (SIS); InterPro IPR001347:IPR000583:IPR005855; KEGG: pca:Pcar_2933 glucosamine--fructose-6-phosphate aminotransferase, isomerizing; COGs: COG0449 Glucosamine 6-phosphate synthetase contains amidotransferase and phosphosugar isomerase domains; SPTR: Q56213 Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; PFAM: Glutamine amidotransferases class-II; SIS domain; TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase (isomerizing)
YP_003508756.1	PFAM: protein of unknown function DUF72; SPTR: A7JV33 Putative uncharacterized protein; InterPro IPR002763; COGs: COG1801 conserved hypothetical protein; KEGG: prw:PsycPRwf_0310 hypothetical protein; PFAM: Protein of unknown function DUF72
YP_003508757.1	PFAM: major facilitator superfamily MFS_1; SPTR: A0YDP6 Multidrug resistance protein 2; InterPro IPR001958:IPR011701:IPR007114; COGs: COG2814 Arabinose efflux permease; KEGG: pat:Patl_1927 major facilitator transporter; PFAM: Major Facilitator Superfamily
YP_003508758.1	TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV; InterPro IPR001544:IPR005785; KEGG: aav:Aave_0264 branched-chain amino acid aminotransferase; COGs: COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; SPTR: A3RQ32 Branched-chain amino acid aminotransferase; PFAM: Aminotransferase class IV; TIGRFAM: branched-chain amino acid aminotransferase, group I
YP_003508759.1	PFAM: protein of unknown function DUF721; InterPro IPR007922; KEGG: aba:Acid345_0498 hypothetical protein; PFAM: Protein of unknown function (DUF721)
YP_003508760.1	PFAM: protein of unknown function DUF81; InterPro IPR002781; KEGG: sde:Sde_2917 hypothetical protein; SPTR: A7CZM6 Putative uncharacterized protein; PFAM: Domain of unknown function DUF81
YP_003508761.1	KEGG: ppr:PBPRA0952 putative cytochrome c-type biogenesis protein CcmF
YP_003508762.1	COGs: COG1195 Recombinational DNA repair ATPase (RecF pathway); InterPro IPR003395:IPR001238; KEGG: acp:A2cp1_0003 DNA replication and repair protein RecF; PFAM: SMC domain protein; SPTR: Q1IXW9 DNA replication and repair protein recF; TIGRFAM: DNA replication and repair protein RecF; PFAM: RecF/RecN/SMC N terminal domain; TIGRFAM: recF protein
YP_003508763.1	PFAM: protein of unknown function DUF6 transmembrane; InterPro IPR000620; KEGG: afw:Anae109_2816 hypothetical protein; SPTR: Q12VG7 Putative uncharacterized protein; PFAM: Integral membrane protein DUF6
YP_003508764.1	PFAM: GCN5-related N-acetyltransferase; InterPro IPR000182; KEGG: acetyltransferase protein; SPTR: A4AEP0 Acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_003508765.1	TIGRFAM: primosomal protein N'; SPTR: A4TYS6 Primosome assembly protein PriA; InterPro IPR005259; COGs: COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase; KEGG: sml:Smlt4194 putative primosomal protein N'; TIGRFAM: primosomal protein N'
YP_003508766.1	KEGG: aha:AHA_2752 GGDEF domain-containing protein
YP_003508767.1	PFAM: major facilitator superfamily MFS_1; InterPro IPR011701; KEGG: ade:Adeh_2213 major facilitator superfamily transporter; SPTR: A2WIM1 Major facilitator superfamily (MFS_1) transporter; PFAM: Major Facilitator Superfamily
YP_003508768.1	PFAM: beta-lactamase domain protein; SPTR: A4WIP6 Beta-lactamase domain protein; InterPro IPR001279; COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: glo:Glov_3342 beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily
YP_003508769.1	PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; InterPro IPR001763; KEGG: mmr:Mmar10_1618 rhodanese domain-containing protein; COGs: COG2897 Rhodanese-related sulfurtransferase; SPTR: A4BVC1 Thiosulfate sulfurtransferase; PFAM: Rhodanese-like domain
YP_003508770.1	SPTR: A0NVZ9 Putative uncharacterized protein; InterPro IPR000182; KEGG: pmy:Pmen_3271 hypothetical protein
YP_003508772.1	TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; InterPro IPR006175:IPR006056; KEGG: glo:Glov_2283 endoribonuclease L-PSP; COGs: COG0251 Putative translation initiation inhibitor yjgF family; SPTR: A3IG49 Pur operon repressor; PFAM: Endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP, putative
YP_003508773.1	TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; InterPro IPR005129; KEGG: gme:Gmet_1576 ArgK protein; COGs: COG1703 Putative periplasmic protein kinase ArgK and related GTPase of G3E family; SPTR: B6YWV0 Lysine/arginine/ornithine transport system kinase; PFAM: ArgK protein; TIGRFAM: LAO/AO transport system ATPase
YP_003508774.1	PFAM: aminotransferase class I and II; SPTR: A8J8W1 Aspartate aminotransferase; InterPro IPR004839; COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; KEGG: AST5; aspartate aminotransferase; PFAM: Aminotransferase class I and II
YP_003508776.1	TIGRFAM: CRISPR-associated protein Cas2; InterPro IPR010152; KEGG: sdy:SDY_2953 hypothetical protein; SPTR: Q0W581 Predicted CRISPR-associated protein; PFAM: CRISPR-associated protein (Cas_Cas2CT1978); TIGRFAM: CRISPR-associated protein Cas2, E. coli subfamily
YP_003508777.1	TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; InterPro IPR002729; KEGG: pmy:Pmen_3755 CRISPR-associated Cas1 family protein; COGs: COG1518 Uncharacterized protein predicted to be involved in DNA repair; SPTR: Q0W582 Putative uncharacterized protein; PFAM: Protein of unknown function DUF48; TIGRFAM: CRISPR-associated protein Cas1, ECOLI subtype; CRISPR-associated protein Cas1
YP_003508778.1	KEGG: pmy:Pmen_3756 CRISPR-associated CSE3 family protein; InterPro IPR010179; SPTR: A3LCN7 Putative uncharacterized protein; PFAM: CRISPR-associated protein CT1974; TIGRFAM: CRISPR-associated protein, Cse3 family; PFAM: CRISPR associated protein; TIGRFAM: CRISPR-associated protein, Cse3 family
YP_003508779.1	TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; InterPro IPR010147:IPR013422; KEGG: ppd:Ppro_2339 CRISPR-associated Cas5 family protein; SPTR: A3EQA4 CRISPR associated protein Cas5; PFAM: CRISPR-associated protein (Cas_Cas5e); TIGRFAM: CRISPR-associated protein Cas5, N-terminal domain; CRISPR-associated protein Cas5, Ecoli subtype
YP_003508780.1	TIGRFAM: CRISPR-associated protein, Cse4 family; InterPro IPR010148; KEGG: pmy:Pmen_3758 CRISPR-associated CSE4 family protein; SPTR: A3EQA5 CRISPR associated protein Cas4; PFAM: CT1975-like protein; TIGRFAM: CRISPR-associated protein, Cse4 family
YP_003508781.1	KEGG: prw:PsycPRwf_1360 hypothetical protein; SPTR: A2VQJ5 Putative uncharacterized protein
YP_003508782.1	TIGRFAM: CRISPR-associated protein, Cse2 family; InterPro IPR013382; KEGG: ppd:Ppro_2341 CRISPR-associated CSE2 family protein; SPTR: A3EQA6 Putative uncharacterized protein; PFAM: CRISPR-associated protein Cse2 (CRISPR_cse2); TIGRFAM: CRISPR-associated protein, Cse2 family
YP_003508783.1	TIGRFAM: CRISPR-associated protein, Cse1 family; InterPro IPR013381; KEGG: ppd:Ppro_2342 CRISPR-associated CSE1 family protein; SPTR: A3EQA7 Putative uncharacterized protein; PFAM: CRISPR-associated protein Cse1 (CRISPR_cse1); TIGRFAM: CRISPR-associated protein, Cse1 family
YP_003508784.1	TIGRFAM: CRISPR-associated helicase Cas3; PFAM: helicase domain protein; SMART: helicase domain protein; InterPro IPR001650:IPR002048:IPR014021:IPR006474; KEGG: pmy:Pmen_3763 CRISPR-associated helicase Cas3 family protein protein; COGs: COG1203 helicase; SPTR: A3EQA8 Putative helicase; PFAM: Helicase conserved C-terminal domain; TIGRFAM: CRISPR-associated helicase Cas3
YP_003508785.1	SPTR: A3KS26 Putative uncharacterized protein; COGs: COG2378 transcriptional regulator protein; KEGG: gme:Gmet_3086 transcriptional regulator, putative
YP_003508786.1	PFAM: NLP/P60 protein; Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; InterPro IPR002482:IPR000064; KEGG: gme:Gmet_1169 NLP/P60:peptidoglycan-binding LysM; COGs: COG0791 Cell wall-associated hydrolase (invasion-associated protein); SPTR: A3IC81 Peptidoglycan hydrolase (Fragment); PFAM: NlpC/P60 family; LysM domain
YP_003508787.1	PFAM: S-layer domain protein; InterPro IPR001119; KEGG: bac:BamMC406_1422 translation initiation factor IF-2; SPTR: Q5SH37 S-layer protein; PFAM: S-layer homology domain
YP_003508789.1	PRIAM: DNA-directed DNA polymerase; PFAM: UMUC domain protein DNA-repair protein; InterPro IPR001126; KEGG: oan:Oant_2282 DNA-directed DNA polymerase; COGs: COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; SPTR: A3ZXX8 ImpB/MucB/SamB family protein; PFAM: impB/mucB/samB family
YP_003508790.1	TIGRFAM: DNA polymerase III, subunits gamma and tau; PRIAM: DNA-directed DNA polymerase; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; SPTR: A3Z407 DNA polymerase, gamma and tau subunits; KEGG: dal:Dalk_1998 DNA polymerase III, subunits gamma and tau; COGs: COG2812 DNA polymerase III gamma/tau subunits; InterPro IPR001270:IPR003959:IPR003593:IPR012763; PFAM: ATPase family associated with various cellular activities (AAA); TIGRFAM: DNA polymerase III, subunits gamma and tau; DNA polymerase III, delta' subunit
YP_003508791.1	PFAM: protein of unknown function DUF156; SPTR: A3TJ87 Putative uncharacterized protein; InterPro IPR003735; COGs: COG1937 conserved hypothetical protein; KEGG: dde:Dde_0676 hypothetical protein; PFAM: Uncharacterised BCR, COG1937
YP_003508792.1	SPTR: A6GHM1 Putative uncharacterized protein
YP_003508793.1	PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; InterPro IPR006047:IPR006589; KEGG: ecm:EcSMS35_1813 alpha amylase family protein; COGs: COG0366 Glycosidase; SPTR: A6CZQ2 Sucrose phosphorylase related protein; PFAM: Alpha amylase, catalytic domain
YP_003508794.1	KEGG: scl:sce7803 OmpA domain-containing protein
YP_003508797.1	PFAM: response regulator receiver; Helix-turn-helix type 11 domain protein; transcriptional regulator domain protein; SMART: response regulator receiver; InterPro IPR013196:IPR001789:IPR001867:IPR005829; KEGG: bxe:Bxe_A0699 two component transcriptional regulator; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; SPTR: A3JJB9 DNA-binding response regulator; PFAM: Transcriptional regulatory protein, C terminal; Response regulator receiver domain
YP_003508798.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; InterProIPR004358:IPR003594:IPR003660:IPR003661:IPR 005467; KEGG: pca:Pcar_3082 two component sensor histidine kinase; COGs: COG0642 Signal transduction histidine kinase; SPTR: A3ZX59 Sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; HAMP domain
YP_003508799.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: A4ZHS2 Putative ferredoxin-NADP reductase; InterPro IPR000759:IPR013027:IPR000103; COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; KEGG: ade:Adeh_3296 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase
YP_003508802.1	PFAM: peptidase C39 bacteriocin processing; SPTR: A7CEM9 Peptidase C39, bacteriocin processing; InterPro IPR005074; COGs: COG3271 double-glycine peptidase; KEGG: rpi:Rpic_3435 peptidase C39 bacteriocin processing; PFAM: Peptidase C39 family
YP_003508805.1	PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; SPTR: A3RXL1 Anaerobic dehydrogenase; InterPro IPR006656:IPR006963:IPR006657:IPR006655; COGs: COG0243 Anaerobic dehydrogenase typically selenocysteine-containing; KEGG: sus:Acid_5857 molybdopterin oxidoreductase; PFAM: Molybdopterin oxidoreductase Fe4S4 domain; Molydopterin dinucleotide binding domain; Molybdopterin oxidoreductase
YP_003508806.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; SPTR: Q4J7Z7 Acyl-CoA dehydrogenase; InterProIPR006090:IPR006091:IPR013107:IPR006089:IPR 000276; COGs: COG1960 Acyl-CoA dehydrogenase; KEGG: pap:PSPA7_1549 putative acyl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain
YP_003508807.1	PRIAM: Threonine aldolase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; InterPro IPR001597; KEGG: sfu:Sfum_0699 threonine aldolase; COGs: COG2008 Threonine aldolase; SPTR: A6CHX7 L-allo-threonine aldolase; PFAM: Beta-eliminating lyase
YP_003508809.1	PFAM: glycerophosphoryl diester phosphodiesterase; SPTR: A7VZ69 Putative uncharacterized protein; InterPro IPR004129:IPR000909; COGs: COG0584 Glycerophosphoryl diester phosphodiesterase; KEGG: scl:sce5119 glycerophosphodiester phosphodiesterase; PFAM: Glycerophosphoryl diester phosphodiesterase family
YP_003508810.1	KEGG: scl:sce7985 hypothetical protein; SPTR: Q1DZP0 Putative uncharacterized protein
YP_003508811.1	InterPro IPR000445:IPR003583; PFAM: helix-hairpin-helix motif; COGs: COG1555 DNA uptake protein and related DNA-binding protein; SPTR: A0YJG5 Putative uncharacterized protein; KEGG: sfu:Sfum_2038 competence protein ComEA helix-hairpin-helix repeat protein; SMART: Helix-hairpin-helix DNA-binding class 1; PFAM: Helix-hairpin-helix motif; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat region
YP_003508812.1	TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; beta-lactamase domain protein; InterPro IPR001279:IPR004477:IPR004797; KEGG: ppd:Ppro_1379 DNA internalization-related competence protein ComEC/Rec2; COGs: COG2333 hydrolase (metallo-beta-lactamase superfamily); SPTR: A6CQY4 ComE operon protein 3; PFAM: Metallo-beta-lactamase superfamily; Competence protein; TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein
YP_003508813.1	TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; InterPro IPR003115:IPR004437; KEGG: gbm:Gbem_3956 ParB-like partition protein; COGs: COG1475 transcriptional regulator protein; SPTR: Q9RYD8 Probable chromosome 1-partitioning protein parB; PFAM: ParB-like nuclease domain; TIGRFAM: ParB-like partition proteins
YP_003508814.1	PFAM: Cobyrinic acid ac-diamide synthase; SPTR: A6BGY4 Putative uncharacterized protein; InterPro IPR000392:IPR002586; COGs: COG1192 ATPase involved in chromosome partitioning; KEGG: tcx:Tcr_2175 cobyrinic acid a,c-diamide synthase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain
YP_003508815.1	TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; InterPro IPR003682; KEGG: bha:BH4060 glucose-inhibited division protein B; COGs: COG0357 S-adenosylmethionine-dependent methyltransferase involved in cell division; SPTR: Q9LCY2 Ribosomal RNA small subunit methyltransferase G; PFAM: Glucose inhibited division protein; TIGRFAM: 16S rRNA methyltransferase GidB
YP_003508816.1	TIGRFAM: glucose inhibited division protein A; PFAM: glucose-inhibited division protein A; InterPro IPR013027:IPR002218:IPR004416; KEGG: pla:Plav_1274 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; COGs: COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division; SPTR: Q5SGV8 tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG; PFAM: Glucose inhibited division protein A; TIGRFAM: glucose-inhibited division protein A