-- dump date 20140619_135808 -- class Genbank::CDS -- table cds_note -- id note YP_956882.1 PFAM: transposase Tn3 family protein; KEGG: sfr:Sfri_3466 transposase Tn3 family protein YP_956887.1 KEGG: gox:GOX2667 hypothetical protein YP_956888.1 KEGG: bxe:Bxe_A3509 hypothetical protein YP_956889.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: aeh:Mlg_0116 transposase, IS204/IS1001/IS1096/IS1165 family protein YP_956890.1 KEGG: vpa:VP1802 hypothetical protein YP_956891.1 KEGG: vch:VCA0356 hypothetical protein YP_956893.1 KEGG: pat:Patl_0690 hypothetical protein YP_956894.1 KEGG: vvy:VV1888 hypothetical protein YP_956895.1 KEGG: gox:GOX2545 hypothetical protein YP_956896.1 PFAM: Integrase, catalytic region; KEGG: hch:HCH_06236 transposase, IS21 family YP_956897.1 PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; SMART: AAA ATPase; KEGG: hch:HCH_06235 IstB helper protein, IS21 family YP_956902.1 PFAM: type IV pilus assembly PilZ YP_956905.1 PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; KEGG: sth:STH2702 transposase subunit YP_956906.1 PFAM: Integrase, catalytic region; KEGG: sfr:Sfri_3414 integrase, catalytic region YP_956909.1 required for the use of phosphonates and phosphite as phosphorus sources YP_956910.1 TIGRFAM: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; SMART: guanylate kinase/L-type calcium channel region; KEGG: tbd:Tbd_2289 guanylate kinase/L-type calcium channel region YP_956911.1 PFAM: major facilitator superfamily MFS_1; KEGG: rpd:RPD_4124 major facilitator superfamily MFS_1 YP_956912.1 KEGG: tbd:Tbd_2291 ABC phosphonate transport system ATPase; TIGRFAM: phosphonate C-P lyase system protein PhnL; PFAM: ABC transporter related; SMART: AAA ATPase YP_956913.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tbd:Tbd_2292 ABC phosphonate transport system ATPase YP_956914.1 PFAM: phosphonate metabolism PhnJ; KEGG: tbd:Tbd_2293 phosphonate metabolism protein PhnJ YP_956915.1 PFAM: phosphonate metabolism; KEGG: tbd:Tbd_2294 phosphonate metabolism protein YP_956916.1 PFAM: phosphonate metabolism; KEGG: tbd:Tbd_2295 putative PhnH protein, phosphonate metabolism, function unknown YP_956917.1 KEGG: tbd:Tbd_2296 putative phosphonate metabolism protein PhnG; K06166 PhnG protein YP_956918.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: ana:all2221 phosphonate metabolism protein YP_956919.1 TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ssp:SSP1425 ABC-type phosphate phosphonate transport system permease component YP_956920.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvu:DVU1936 phosphonate ABC transporter, ATP-binding protein YP_956921.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: pol:Bpro_2236 phosphonate-binding periplasmic protein YP_956922.1 PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: mmr:Mmar10_1503 resolvase YP_956924.1 KEGG: rfr:Rfer_4327 hypothetical protein YP_956926.1 KEGG: rsp:RSP_4246 putative SinR-like protein YP_956927.1 PFAM: nuclease (SNase domain protein) YP_956929.1 KEGG: psp:PSPPH_5060 H-NS YP_956931.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: xcb:XC_3379 extracellular protease YP_956934.1 KEGG: swo:Swol_1114 hypothetical protein YP_956938.1 KEGG: pfo:Pfl_2927 cointegrate resolution protein T YP_956939.1 PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: rfe:RF_p34 DNA polymerase III subunit epsilon YP_956940.1 PFAM: metallophosphoesterase; KEGG: csa:Csal_1928 metallophosphoesterase YP_956941.1 PFAM: phage integrase family protein; KEGG: cvi:CV2396 probable integrase/recombinase protein YP_956942.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: cbu:CBUA0038 RepB protein, putative YP_956943.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: lpp:plpp0002 hypothetical protein YP_956944.1 PFAM: initiator RepB protein; KEGG: gka:GKP02 replication initiator protein YP_956945.1 PFAM: plasmid replicase; KEGG: xac:XACb0016 replication protein A YP_956946.1 TIGRFAM: addiction module antidote protein, HigA family; KEGG: rru:Rru_A2779 plasmid maintenance system antidote protein YP_956950.1 KEGG: dps:DP1991 hypothetical protein YP_956952.1 KEGG: tbr:Tb11.01.6740 hypothetical protein YP_956953.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: spt:SPA0100 putative IS element transposase YP_956954.1 PFAM: transposase IS200-family protein; KEGG: ecc:c3803 putative transposase YP_956956.1 KEGG: ppu:PP_4237 thiol:disulfide interchange protein DsbG YP_956957.1 KEGG: lpp:lpp0515 hypothetical protein YP_956958.1 KEGG: lpp:lpp0516 hypothetical protein YP_956959.1 KEGG: lpf:lpl0493 hypothetical protein YP_956960.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: aeh:Mlg_1465 lytic murein transglycosylase YP_956964.1 KEGG: bam:Bamb_4575 haemagluttinin domain protein YP_956965.1 KEGG: nar:Saro_1437 hypothetical protein YP_956966.1 KEGG: xfa:XFa0003 topoisomerase I; TIGRFAM: DNA topoisomerase I; PFAM: TOPRIM domain protein; DNA topoisomerase, type IA, central domain protein; SMART: DNA topoisomerase I, ATP-binding; DNA topoisomerase I, DNA-binding; Toprim sub domain protein YP_956969.1 KEGG: bpm:BURPS1710b_A0657 hypothetical protein YP_956972.1 PFAM: type II secretion system protein E; KEGG: pol:Bpro_5448 type II secretion system protein E YP_956973.1 PFAM: type II secretion system protein; KEGG: vch:VC0836 toxin co-regulated pilus biosynthesis protein E YP_956974.1 KEGG: ecp:ECP_1912 putative type IV pilin protein precursor YP_956980.1 KEGG: csa:Csal_1579 hypothetical protein YP_956983.1 KEGG: xcv:XCVd0116 hypothetical protein YP_956990.1 PFAM: PemK family protein; KEGG: ppr:PBPRA2672 putative MazF protein YP_956991.1 KEGG: ppr:PBPRA2671 hypothetical cell growth regulatory protein MazE YP_956992.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: csa:Csal_3168 putative transposase, IS891/IS1136/IS1341 YP_956994.1 PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; SMART: AAA ATPase; KEGG: bxe:Bxe_A1794 putative transposase-related ATP-binding subunit YP_956995.1 PFAM: Integrase, catalytic region; KEGG: eba:ebA2485 transposase YP_956999.1 PFAM: helix-turn-helix domain protein YP_957000.1 KEGG: hpj:jhp0933 hypothetical protein YP_957002.1 KEGG: eba:ebA8 hypothetical protein YP_957005.1 PFAM: type III restriction enzyme, res subunit; KEGG: xfa:XF1966 hypothetical protein YP_957006.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: xft:PD0833 methyltransferase, type III restriction-modification system YP_957008.1 PFAM: phage integrase family protein; KEGG: hch:HCH_03092 site-specific recombinase XerC YP_957009.1 PFAM: helix-turn-helix domain protein; KEGG: pau:PA14_07960 transcriptional regulator PrtR YP_957014.1 KEGG: bcl:ABC3097 beta-N-acetylglucosaminidase YP_957015.1 KEGG: eci:UTI89_C4880 putative DNA helicase, superfamily I YP_957016.1 PFAM: zinc finger, CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core, N-terminal domain; KEGG: sal:Sala_0980 DNA primase YP_957017.1 PFAM: UvrD/REP helicase; KEGG: bha:BH0648 ATP-dependent DNA helicase YP_957018.1 KEGG: yps:YPTB1795 recombination associated protein YP_957019.1 KEGG: cbu:CBU_1622 IcmB protein YP_957024.1 KEGG: rpc:RPC_3245 hypothetical protein YP_957025.1 PFAM: helicase domain protein; KEGG: spi:MGAS10750_Spy1698 superfamily II DNA and RNA helicase YP_957028.1 PFAM: Lytic transglycosylase, catalytic; KEGG: xcv:XCVd0040 putative lytic murein transglycosylase YP_957029.1 KEGG: cbu:CBU_1633 IcmP protein YP_957031.1 KEGG: lpn:lpg0446 IcmO (DotL) YP_957040.1 KEGG: cbu:CBU_1650 IcmW protein YP_957041.1 KEGG: bxe:Bxe_A3946 hypothetical protein YP_957044.1 PFAM: StbA family protein; KEGG: noc:Noc_0623 hypothetical protein YP_957045.1 PFAM: type II secretion system protein E; KEGG: cbu:CBU_1645 DotB protein YP_957046.1 KEGG: lpp:lpp2729 defect in organelle trafficking lipoprotein DotC YP_957047.1 KEGG: lpf:lpl2601 lipoprotein DotD YP_957049.1 PFAM: phosphoesterase, RecJ domain protein; KEGG: cbu:CBU_0506 single-stranded-DNA-specific exonuclease RecJ YP_957051.1 PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like; KEGG: cfa:476128 similar to zinc finger, RAN-binding domain containing 3 YP_957053.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bpa:BPP0380 acetyltransferase (GNAT) family protein YP_957054.1 KEGG: plu:plu1617 hypothetical protein YP_957060.1 KEGG: reu:Reut_C6002 hypothetical protein YP_957065.1 PFAM: C-5 cytosine-specific DNA methylase; KEGG: psb:Psyr_1433 C-5 cytosine-specific DNA methylase YP_957074.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: eba:p1B79 hypothetical protein YP_957078.1 KEGG: pol:Bpro_5066 hypothetical protein YP_957079.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: pol:Bpro_5505 UBA/ThiF-type NAD/FAD binding fold YP_957085.1 KEGG: pcr:Pcryo_1614 hypothetical protein YP_957089.1 KEGG: xcv:XCVd0054 putative DNA helicase YP_957091.1 PFAM: helix-turn-helix domain protein YP_957093.1 PFAM: phosphoadenosine phosphosulfate reductase; KEGG: pol:Bpro_5337 phosphoadenosine phosphosulfate reductase YP_957094.1 KEGG: vfi:VF1123 hypothetical protein YP_957097.1 KEGG: dps:DP2340 hypothetical protein YP_957098.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: son:SO0471 hypothetical dioxygenase YP_957099.1 TIGRFAM: 4-oxalocrotonate tautomerase family enzyme; PFAM: 4-oxalocrotonate tautomerase; KEGG: eca:ECA0844 putative tautomerase YP_957100.1 KEGG: sdn:Sden_0763 hypothetical protein YP_957101.1 PFAM: Glutathione S-transferase, N-terminal domain; KEGG: cps:CPS_2673 putative glutathione S-transferase YP_957102.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cps:CPS_2674 transcriptional regulator, LysR family YP_957107.1 PFAM: CHAD domain containing protein; KEGG: hch:HCH_01475 hypothetical protein YP_957108.1 PFAM: beta-lactamase domain protein; KEGG: xcv:XCV1104 hypothetical protein YP_957110.1 TIGRFAM: acetoacetyl-CoA reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: hch:HCH_04996 acetoacetyl-CoA reductase YP_957111.1 PFAM: acetyl-CoA hydrolase/transferase; KEGG: rru:Rru_A2513 acetyl-CoA hydrolase/transferase YP_957112.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_957113.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: aeh:Mlg_2422 ATPase, ParA family YP_957114.1 PFAM: basic membrane lipoprotein; KEGG: mlo:mlr3148 membrane lipoprotein YP_957115.1 PFAM: glycosyl transferase, group 1; KEGG: csa:Csal_1224 glycosyl transferase, group 1 YP_957116.1 KEGG: pfl:PFL_4712 hypothetical protein YP_957118.1 KEGG: pfo:Pfl_3027 hypothetical protein YP_957119.1 PFAM: protein of unknown function DUF1527; KEGG: noc:Noc_0651 protein of unknown function DUF1527 YP_957121.1 KEGG: pfo:Pfl_3023 hypothetical protein YP_957122.1 KEGG: net:Neut_0087 putative secreted protein YP_957123.1 KEGG: eca:ECA0570 hypothetical protein YP_957124.1 KEGG: hso:HS_1761 conserved hypothetical protein YP_957125.1 KEGG: stt:t4265 possible exported protein YP_957126.1 KEGG: noc:Noc_0643 hypothetical protein YP_957127.1 KEGG: noc:Noc_0642 hypothetical protein YP_957128.1 KEGG: noc:Noc_0640 hypothetical protein YP_957129.1 PFAM: conserved hypothetical protein 698; KEGG: csa:Csal_1762 conserved hypothetical protein 698 YP_957130.1 KEGG: pfo:Pfl_3013 hypothetical protein YP_957131.1 KEGG: net:Neut_0098 conserved hypothetical protein YP_957132.1 KEGG: hit:NTHI0123 conserved putative exported protein YP_957133.1 PFAM: Lytic transglycosylase, catalytic; KEGG: eca:ECA0556 hypothetical protein YP_957134.1 KEGG: pau:PA14_59650 hypothetical protein YP_957136.1 KEGG: noc:Noc_0628 PilL protein YP_957138.1 KEGG: pau:PA14_59130 hypothetical protein YP_957139.1 KEGG: hso:HS_1722 conserved hypothetical protein YP_957140.1 KEGG: pha:PSHAa3016 partitioning protein B YP_957141.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: sec:SC1241 SopB protein YP_957142.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: yps:pYV0032 SopA; putative plasmid partitioning transcription repressor YP_957143.1 KEGG: nmu:Nmul_B2812 hypothetical protein YP_957144.1 PFAM: protein of unknown function DUF1528; Relaxase; KEGG: pfl:PFL_4751 hypothetical protein YP_957146.1 KEGG: she:Shewmr4_1551 hypothetical protein YP_957147.1 PFAM: Integrase, catalytic region; KEGG: sfr:Sfri_3960 integrase, catalytic region YP_957148.1 KEGG: sfr:Sfri_3961 transposase IS3/IS911 family protein YP_957149.1 PFAM: transposase, mutator type; KEGG: net:Neut_0357 transposase, mutator type YP_957150.1 PFAM: transposase IS3/IS911 family protein; KEGG: xac:XACb0051 ISxac2 transposase YP_957151.1 PFAM: transposase IS3/IS911 family protein; KEGG: tcx:Tcr_1853 transposase IS3/IS911 YP_957152.1 PFAM: Integrase, catalytic region; KEGG: sfx:S0235 IS911 orfA YP_957153.1 KEGG: she:Shewmr4_1551 hypothetical protein YP_957154.1 PFAM: NERD domain protein; KEGG: shm:Shewmr7_3374 NERD domain protein YP_957155.1 KEGG: ehi:82.t00025 Viral A-type inclusion protein repeat, putative Pfam: Nha1_C ERM KE2 WXG100 Vicilin_N TBPIP Myosin_tail_1 Filament YscO Rad50_zn_hook Bacillus_HBL HAP1_N Laminin_I EzrA DUF164 TPR_MLP1_2 DUF948 MpPF2 MSG Spectrin LMP PROSITE: GLU_RICH LYS_RICH YP_957157.1 PFAM: phage integrase family protein; KEGG: pol:Bpro_2511 phage integrase YP_957158.1 PFAM: small acid-soluble spore P family protein YP_957159.1 KEGG: sde:Sde_1963 chromosome segregation ATPases-like YP_957160.1 PFAM: phage integrase family protein; KEGG: sde:Sde_1962 AP endonuclease, family 1 YP_957161.1 KEGG: hch:HCH_06853 universal stress protein UspA and related nucleotide-binding protein YP_957162.1 PFAM: transposase IS3/IS911 family protein; KEGG: tcx:Tcr_1853 transposase IS3/IS911 YP_957163.1 PFAM: sodium/hydrogen exchanger; KEGG: hch:HCH_06854 Kef-type K+ transport system, predicted NAD-binding component YP_957164.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; KEGG: hch:HCH_06855 cation transport ATPase YP_957165.1 KEGG: ilo:IL0529 predicted ATPase, AAA+ superfamily YP_957166.1 KEGG: dge:Dgeo_1704 transposase Tn3 YP_957167.1 KEGG: net:Neut_2405 transposase, mutator type YP_957168.1 PFAM: IS66 Orf2 family protein; KEGG: eba:ebB23 probable transpoase helper protein YP_957169.1 PFAM: transposase IS66; KEGG: eba:ebA859 transposase YP_957170.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: gme:Gmet_2828 methyl-accepting chemotaxis sensory transducer YP_957171.1 PFAM: Integrase, catalytic region; KEGG: sfx:S0235 IS911 orfA YP_957172.1 PFAM: transposase IS3/IS911 family protein; KEGG: tcx:Tcr_1853 transposase IS3/IS911 YP_957173.1 PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: rme:Rmet_6187 resolvase-like protein YP_957174.1 PFAM: transposase Tn3 family protein; KEGG: mfa:Mfla_1495 transposase Tn3 YP_957175.1 PFAM: transposase IS66; KEGG: eba:p2A279 transposase YP_957177.1 PFAM: transposase, mutator type; KEGG: sgl:SG2070 transposase YP_957178.1 KEGG: rfr:Rfer_4150 hypothetical protein YP_957179.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: ana:all8086 transcriptional regulator YP_957180.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: ana:all8087 glycerate dehydrogenase YP_957181.1 TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ana:all8088 phosphonate transport system permease protein YP_957182.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: ana:all8089 putative phosphonate transport system substrate-binding protein YP_957183.1 KEGG: ana:all8090 phosphonate transport system ATP-binding protein; TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_957184.1 KEGG: neu:NE0835 transposase Tn3 family YP_957188.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: aba:Acid345_2412 histidine kinase YP_957189.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: spt:SPA0873 UmuC protein YP_957190.1 PFAM: peptidase S24, S26A and S26B; KEGG: dvu:DVU2907 umuD protein YP_957191.1 TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: abo:ABO_1367 transcriptional regulator, MerR family YP_957192.1 KEGG: bxe:Bxe_C0883 heavy metal/H+ antiporter, CDF family YP_957193.1 KEGG: eli:ELI_10790 Il-IS_2, transposase YP_957194.1 KEGG: ppu:PP_3150 hypothetical protein YP_957195.1 KEGG: csa:Csal_1579 hypothetical protein YP_957196.1 KEGG: pol:Bpro_5051 hypothetical protein YP_957197.1 KEGG: sat:SYN_02693 acetyltransferase YP_957198.1 KEGG: vch:VCA0486 hypothetical protein YP_957199.1 TIGRFAM: mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: noc:Noc_2758 mercuric reductase MerA YP_957200.1 KEGG: noc:Noc_2759 hypothetical protein YP_957201.1 TIGRFAM: mercuric transport protein periplasmic component; PFAM: Heavy metal transport/detoxification protein; KEGG: net:Neut_2569 mercuric transport protein periplasmic component YP_957202.1 PFAM: Mercuric transport protein MerT; KEGG: net:Neut_2570 mercuric transport protein MerT YP_957203.1 TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: net:Neut_2571 transcriptional regulator, MerR family YP_957205.1 KEGG: ppu:PP_4439 ISPpu14, transposase Orf3 YP_957206.1 PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: mlo:mll9331 integrase/recombinase YP_957207.1 PFAM: phage integrase family protein; KEGG: mlo:mll9330 integrase/recombinase YP_957208.1 PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: sus:Acid_2943 phage integrase family protein YP_957209.1 PFAM: transposase IS66; KEGG: pau:PA14_59580 putative transposase YP_957210.1 PFAM: IS66 Orf2 family protein; KEGG: ppu:PP_4438 ISPpu14, transposase Orf2 YP_957211.1 PFAM: transposase IS3/IS911 family protein; KEGG: pst:PSPTO_5581 hypothetical protein YP_957212.1 PFAM: transposase IS3/IS911 family protein; KEGG: dde:Dde_3365 ISSod2, transposase OrfA YP_957213.1 PFAM: Integrase, catalytic region; KEGG: dde:Dde_3364 ISxcd1 transposase YP_957215.1 PFAM: transposase, IS4 family protein; KEGG: vch:VCA0472 IS5 transposase YP_957217.1 PFAM: phage integrase family protein; KEGG: pol:Bpro_1705 phage integrase YP_957218.1 PFAM: phage integrase family protein; KEGG: sfr:Sfri_3494 phage integrase family protein YP_957219.1 KEGG: sfr:Sfri_3493 hypothetical protein YP_957220.1 KEGG: vpa:VPA1267 hypothetical protein YP_957221.1 TIGRFAM: phosphonates metabolism transcriptional regulator PhnF; PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: tbd:Tbd_2301 transcriptional regulator, GntR family YP_957222.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: hne:HNE_2459 phosphonate ABC transporter, periplasmic phosphonate-binding protein YP_957223.1 KEGG: tcx:Tcr_2080 ABC transporter related; TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_957224.1 TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tcx:Tcr_2081 phosphonate uptake transporter YP_957225.1 KEGG: tbd:Tbd_2296 putative phosphonate metabolism protein PhnG; K06166 PhnG protein YP_957226.1 PFAM: phosphonate metabolism; KEGG: tbd:Tbd_2295 putative PhnH protein, phosphonate metabolism, function unknown YP_957227.1 PFAM: phosphonate metabolism; KEGG: tbd:Tbd_2294 phosphonate metabolism protein YP_957228.1 PFAM: phosphonate metabolism PhnJ; KEGG: tbd:Tbd_2293 phosphonate metabolism protein PhnJ YP_957229.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tbd:Tbd_2292 ABC phosphonate transport system ATPase YP_957230.1 KEGG: tcx:Tcr_2087 ABC transporter related; TIGRFAM: phosphonate C-P lyase system protein PhnL; PFAM: ABC transporter related; SMART: AAA ATPase YP_957231.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: tbd:Tbd_2290 amidohydrolase-like protein YP_957232.1 TIGRFAM: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; SMART: guanylate kinase/L-type calcium channel region; KEGG: tbd:Tbd_2289 guanylate kinase/L-type calcium channel region YP_957233.1 required for the use of phosphonates and phosphite as phosphorus sources YP_957234.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: tcx:Tcr_2091 hypothetical protein YP_957235.1 KEGG: cps:CPS_1634 hypothetical protein YP_957239.1 PFAM: DSBA oxidoreductase; KEGG: bxe:Bxe_A1183 hypothetical protein YP_957240.1 PFAM: transposase IS3/IS911 family protein; KEGG: son:SO4268 ISSod2, transposase OrfA YP_957241.1 PFAM: Integrase, catalytic region; KEGG: sfr:Sfri_3960 integrase, catalytic region YP_957249.1 KEGG: stm:PSLT048 alpha-helical coiled-coil protein YP_957250.1 KEGG: eba:ebA2664 hypothetical protein YP_957252.1 PFAM: von Willebrand factor, type A; KEGG: dvu:DVU2043 hypothetical protein YP_957253.1 KEGG: gsu:GSU2160 hypothetical protein YP_957255.1 PFAM: ATPase associated with various cellular activities, AAA_5; KEGG: lip:LI0185 MoxR-like ATPases YP_957256.1 KEGG: eba:p1B105 hypothetical protein YP_957258.1 TIGRFAM: RecT protein; KEGG: bbr:BB2192 phage-related DNA recombination protein YP_957260.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: bpn:BPEN_028 ssDNA-binding protein controls activity of RecBCD nuclease YP_957263.1 KEGG: ecs:ECs4535 hypothetical protein YP_957264.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: xft:PD0833 methyltransferase, type III restriction-modification system YP_957265.1 PFAM: type III restriction enzyme, res subunit; KEGG: xfa:XF1966 hypothetical protein YP_957267.1 KEGG: eba:ebA8 hypothetical protein YP_957270.1 KEGG: son:SO4005 hypothetical protein YP_957271.1 KEGG: sfr:Sfri_0527 hypothetical protein YP_957272.1 KEGG: sdn:Sden_2990 hypothetical protein YP_957273.1 KEGG: son:SO4008 hypothetical protein YP_957274.1 PFAM: Integrase, catalytic region; KEGG: sfx:S0235 IS911 orfA YP_957275.1 PFAM: transposase IS3/IS911 family protein; KEGG: tcx:Tcr_1853 transposase IS3/IS911 YP_957276.1 PFAM: helicase domain protein; KEGG: spt:SPA4314 hypothetical protein YP_957277.1 PFAM: transposase, IS4 family protein; KEGG: pol:Bpro_5331 transposase, IS4 YP_957278.1 PFAM: DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: spt:SPA4314 hypothetical protein YP_957279.1 KEGG: stt:t4545 hypothetical protein YP_957280.1 PFAM: metallophosphoesterase; KEGG: hch:HCH_04712 diadenosine tetraphosphatase and related serine/threonine protein phosphatase YP_957282.1 KEGG: aeh:Mlg_1474 transcriptional regulator-like protein YP_957284.1 PFAM: protein of unknown function DUF159; KEGG: aba:Acid345_3891 protein of unknown function DUF159 YP_957286.1 KEGG: mxa:MXAN_6344 hypothetical protein YP_957289.1 KEGG: ilo:IL2346 predicted aspartyl protease YP_957292.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sit:TM1040_1751 transcriptional regulator, LysR family YP_957293.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: pha:PSHAb0174 putative oxidoreductase, NAD(P)-binding domain YP_957294.1 PFAM: ThiJ/PfpI domain protein; KEGG: xac:XAC3491 NonF-related protein YP_957296.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_957297.1 KEGG: hch:HCH_00003 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain YP_957298.1 PFAM: ABC-1 domain protein; KEGG: hch:HCH_00005 ABC1 family protein kinase YP_957299.1 TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein; KEGG: pfl:PFL_0003 DNA replication and repair protein RecF YP_957300.1 negatively supercoils closed circular double-stranded DNA YP_957301.1 KEGG: ppr:PBPRB0804 hypothetical protein YP_957302.1 PFAM: aminotransferase class-III; KEGG: csa:Csal_1289 4-aminobutyrate aminotransferase YP_957303.1 KEGG: pfl:PFL_1935 ABC transporter, ATP-binding/permease protein; TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase YP_957304.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: aeh:Mlg_0391 ABC transporter related YP_957305.1 TIGRFAM: exodeoxyribonuclease V, alpha subunit; KEGG: pfo:Pfl_0690 exodeoxyribonuclease V, alpha subunit YP_957306.1 TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: pfl:PFL_0741 exodeoxyribonuclease V, beta subunit YP_957307.1 TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V, RecC subunit; KEGG: pau:PA14_55690 exodeoxyribonuclease V gamma chain YP_957308.1 KEGG: hch:HCH_03971 hypothetical protein YP_957309.1 KEGG: pae:PA1865 hypothetical protein YP_957310.1 PFAM: DEAD_2 domain protein; SMART: DEXDc2; helicase c2; KEGG: pae:PA1866 hypothetical protein YP_957311.1 KEGG: pau:PA14_12550 hypothetical protein YP_957312.1 PFAM: secretion protein HlyD family protein; KEGG: hch:HCH_01961 membrane-fusion protein YP_957313.1 PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: dar:Daro_0987 ABC-2:ABC transporter related YP_957314.1 PFAM: ABC-2 type transporter; KEGG: hch:HCH_01963 ABC-type multidrug transport system, permease component YP_957315.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sal:Sala_0277 glyoxalase/bleomycin resistance protein/dioxygenase YP_957316.1 PFAM: Lipocalin-related protein and Bos/Can/Equ allergen; Lipocalin family protein; KEGG: vfi:VFA0842 outer membrane lipoprotein Blc YP_957319.1 KEGG: bxe:Bxe_A0367 hypothetical protein YP_957320.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: aeh:Mlg_1531 IstB domain protein ATP-binding protein YP_957321.1 PFAM: Integrase, catalytic region; KEGG: aeh:Mlg_2334 integrase, catalytic region YP_957323.1 KEGG: nha:Nham_4502 ATPase associated with various cellular activities, AAA_5 YP_957324.1 KEGG: pfo:Pfl_2418 hypothetical protein YP_957325.1 PFAM: restriction modification system DNA specificity domain; KEGG: spt:SPA4345 subunit S of type I restriction-modification system YP_957326.1 PFAM: N-6 DNA methylase; KEGG: son:SO4265 type I restriction-modification system, M subunit YP_957327.1 PFAM: S-type Pyocin domain protein; KEGG: vpa:VPA1263 hypothetical protein YP_957328.1 PFAM: Barstar (barnase inhibitor); KEGG: nme:NMB0646 ribonuclease inhibitor barstar YP_957329.1 KEGG: gka:GK3291 hypothetical protein YP_957330.1 KEGG: xom:XOO_4009 hypothetical protein YP_957331.1 PFAM: cation transporter; KEGG: csa:Csal_2171 cation transporter YP_957332.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_957333.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_957334.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain YP_957335.1 TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: hch:HCH_00028 sun protein YP_957336.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: hch:HCH_00029 methionyl-tRNA formyltransferase YP_957337.1 KEGG: sde:Sde_0021 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase YP_957338.1 PFAM: Peptidoglycan-binding LysM; KEGG: hch:HCH_00031 uncharacterized protein containing LysM domain YP_957339.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: dar:Daro_0019 smf protein YP_957340.1 PFAM: SUA5/yciO/yrdC, N-terminal domain; KEGG: pau:PA14_00240 putative translation factor YP_957341.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis YP_957342.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate YP_957343.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: hch:HCH_00038 flagellar motor component YP_957344.1 PFAM: OmpA/MotB domain protein; KEGG: hch:HCH_00039 flagellar motor protein YP_957345.1 KEGG: hch:HCH_00040 hypothetical protein YP_957346.1 PFAM: heat shock protein Hsp20; KEGG: hch:HCH_00041 molecular chaperone (small heat shock protein) YP_957347.1 KEGG: csa:Csal_0401 anhydrase, family 3 protein YP_957348.1 PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: hch:HCH_00043 oligopeptidase A YP_957349.1 KEGG: pen:PSEEN0051 hypothetical protein YP_957350.1 PFAM: Gluconate transporter; Citrate transporter; Na+/H+ antiporter NhaC; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pau:PA14_29770 putative permease YP_957351.1 PFAM: protein of unknown function DUF1653; KEGG: csa:Csal_2896 protein of unknown function DUF1653 YP_957352.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor, extracellular region 2; Diverse 7TM receptor, transmembrane region; KEGG: sde:Sde_3939 response regulator receiver domain protein (CheY-like) YP_957353.1 PFAM: DoxX family protein; KEGG: abo:ABO_0818 hypothetical protein YP_957354.1 KEGG: hch:HCH_00045 hypothetical protein YP_957355.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: hch:HCH_00046 Na+-driven multidrug efflux pump YP_957356.1 PFAM: cytochrome c oxidase, subunit II; cytochrome c, class I; cytochrome C oxidase subunit II, transmembrane region; KEGG: hch:HCH_00047 cytochrome-c oxidase, subunit II YP_957357.1 PFAM: cytochrome c oxidase, subunit I; KEGG: pen:PSEEN0057 cytochrome c oxidase, subunit I YP_957358.1 PFAM: cytochrome c oxidase assembly protein CtaG/Cox11; KEGG: ilo:IL0258 cytochrome c oxidase assembly protein YP_957359.1 PFAM: cytochrome c oxidase, subunit III; KEGG: hch:HCH_00049 cytochrome-c oxidase, subnunit III YP_957360.1 KEGG: pau:PA14_01330 hypothetical protein YP_957361.1 KEGG: hch:HCH_00051 hypothetical protein YP_957362.1 KEGG: hch:HCH_00052 hypothetical protein YP_957363.1 PFAM: cytochrome oxidase assembly; KEGG: pfl:PFL_0068 cytochrome oxidase assembly protein YP_957364.1 converts protoheme IX and farnesyl diphosphate to heme O YP_957365.1 PFAM: electron transport protein SCO1/SenC; KEGG: ppu:PP_0111 Sco1/SenC family protein YP_957366.1 PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: aci:ACIAD2610 putative transport protein (MFS superfamily) YP_957367.1 KEGG: hch:HCH_05855 ATP-dependent helicase HrpB; TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; Helicase ATP-dependent, C-terminal domain protein; SMART: DEAD-like helicases-like YP_957368.1 PFAM: initiation factor 2B related; KEGG: tko:TK1047 translation initiation factor eIF-2B, delta subunit YP_957369.1 KEGG: ilo:IL2540 hypothetical protein YP_957370.1 PFAM: RimK domain protein ATP-grasp; KEGG: bha:BH2598 hypothetical protein YP_957371.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: psp:PSPPH_4273 decarboxylase, ornithine/DAP/arginine decarboxylase family 2 YP_957372.1 PFAM: major facilitator superfamily MFS_1; KEGG: nwi:Nwi_1437 major facilitator superfamily MFS_1 YP_957373.1 N-acetyldiaminobutyrate dehydratase; catalyzes the formation of the osmoprotectant ecotoine from gamma-N-acetyl-alpha,gamma-diaminobutyric acid YP_957374.1 KEGG: abo:ABO_0013 hypothetical protein YP_957375.1 KEGG: abo:ABO_0012 hypothetical protein YP_957376.1 KEGG: aeh:Mlg_2508 hypothetical protein YP_957377.1 KEGG: rfr:Rfer_3022 putative D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane YP_957378.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; PAS fold-4 domain protein; SMART: PAS domain containing protein; AAA ATPase; KEGG: dar:Daro_0455 helix-turn-helix, fis-type YP_957379.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: hch:HCH_04273 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component YP_957380.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: hch:HCH_04274 TRAP-type mannitol/chloroaromatic compound transport system, small permease component YP_957381.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: hch:HCH_04275 TRAP-type mannitol/chloroaromatic compound transport system, large permease component YP_957382.1 catalyzes the formation of acetoacetate from 3-hydroxybutyrate YP_957383.1 AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase YP_957384.1 KEGG: abo:ABO_1281 isocitrate dehydrogenase (NADP-dependent); TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type YP_957385.1 PFAM: sodium/hydrogen exchanger; KEGG: sil:SPO2079 Na(+)/H(+) antiporter, homolog YP_957386.1 TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: cps:CPS_3090 YbaK/EbsC protein YP_957387.1 PFAM: alanine racemase domain protein; KEGG: pen:PSEEN3315 hypothetical protein YP_957388.1 TIGRFAM: FAD-linked oxidoreductase; PFAM: FAD linked oxidase domain protein; KEGG: ccr:CC1219 oxidoreductase, FAD-binding YP_957389.1 KEGG: pfl:PFL_3710 cytochrome c family protein YP_957390.1 KEGG: eba:ebA864 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; SMART: PAS domain containing protein YP_957391.1 PFAM: beta-lactamase; KEGG: hch:HCH_00055 beta-lactamase class C and other penicillin binding protein YP_957394.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; Diverse 7TM receptor, extracellular region 2; Diverse 7TM receptor, transmembrane region; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: hch:HCH_06299 signal transduction histidine kinase YP_957396.1 PFAM: response regulator receiver; KEGG: pha:PSHAa0913 chemotaxis protein YP_957399.1 KEGG: hch:HCH_06640 hypothetical protein YP_957400.1 TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: ilo:IL0914 predicted PP-loop superfamily ATPase YP_957401.1 KEGG: hch:HCH_06643 organic radical activating enzyme YP_957402.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: abo:ABO_1995 transcriptional regulator, AraC family YP_957403.1 PFAM: alpha/beta hydrolase fold; KEGG: sal:Sala_0198 alpha/beta hydrolase fold YP_957404.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bps:BPSS1845 putative endonuclease/exonuclease/phosphatase family protein YP_957405.1 KEGG: abo:ABO_1834 hypothetical protein YP_957406.1 PFAM: major facilitator superfamily MFS_1; KEGG: sal:Sala_2954 major facilitator superfamily MFS_1 YP_957407.1 PFAM: regulatory protein, MarR; KEGG: hch:HCH_05143 transcriptional regulator YP_957408.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: hch:HCH_05142 permease of the major facilitator superfamily YP_957409.1 PFAM: protein of unknown function UPF0016; KEGG: sfr:Sfri_0575 protein of unknown function UPF0016 YP_957410.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: pau:PA14_27180 putative ErfK/YbiS/YcfS/YnhG family protein YP_957411.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: abo:ABO_2404 oxidoreductase, short chain dehydrogenase/reductase family YP_957412.1 PFAM: protein of unknown function DUF107; KEGG: csa:Csal_2767 protein of unknown function DUF107 YP_957413.1 PFAM: band 7 protein; KEGG: csa:Csal_2766 band 7 protein YP_957414.1 KEGG: hch:HCH_00324 hypothetical protein YP_957415.1 KEGG: hch:HCH_06401 hypothetical protein YP_957416.1 PFAM: transporter-associated region; sodium/hydrogen exchanger; KEGG: pst:PSPTO_5023 sodium/hydrogen exchanger family protein YP_957417.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: abo:ABO_1366 PhoQ YP_957418.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: abo:ABO_1365 DNA-binding heavy metal response regulator, putative YP_957419.1 KEGG: abo:ABO_1364 copper-binding protein YP_957420.1 KEGG: abo:ABO_1363 copper resistance protein A precursor; TIGRFAM: copper-resistance protein, CopA family; PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3 YP_957421.1 PFAM: copper resistance B precursor; KEGG: abo:ABO_1362 copper resistance protein B precursor YP_957422.1 KEGG: ilo:IL1220 hypothetical protein YP_957423.1 PFAM: amino acid permease-associated region; Amino acid transporter, transmembrane; KEGG: abo:ABO_1361 amino acid transporter, putative YP_957424.1 KEGG: ilo:IL1239 hypothetical protein YP_957425.1 KEGG: abo:ABO_1360 copper-translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein YP_957428.1 PFAM: outer membrane efflux protein; KEGG: ilo:IL1224 outer membrane efflux protein YP_957429.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: ilo:IL1223 membrane-fusion protein, RND-like efflux system component YP_957430.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: ilo:IL1222 Co/Zn/Cd efflux system membrane component YP_957431.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sdn:Sden_0783 LysR, substrate-binding YP_957432.1 PFAM: DoxX family protein; KEGG: sdn:Sden_0782 DoxX YP_957433.1 PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: pca:Pcar_0172 LigB family enzyme YP_957434.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pfl:PFL_5296 NADH dehydrogenase YP_957435.1 PFAM: PEBP family protein; KEGG: csa:Csal_0657 YbhB and YbcL YP_957436.1 PFAM: metallophosphoesterase; KEGG: hch:HCH_02241 hypothetical protein YP_957437.1 PFAM: regulatory protein, TetR; KEGG: ilo:IL2384 transcriptional regulator, TetR family YP_957438.1 PFAM: ADP-ribosylation/Crystallin J1; KEGG: jan:Jann_0730 hypothetical protein YP_957439.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; KEGG: sfr:Sfri_2957 pyridine nucleotide-disulphide oxidoreductase dimerisation region YP_957440.1 PFAM: Radical SAM domain protein; KEGG: hne:HNE_0593 radical SAM domain protein YP_957441.1 TIGRFAM: L-2,4-diaminobutyric acid acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: abo:ABO_2150 DABA acetyltransferase YP_957442.1 catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde YP_957443.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP YP_957444.1 PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: ter:Tery_4426 RNA polymerase, sigma 28 subunit YP_957445.1 KEGG: ilo:IL0121 hypothetical protein YP_957447.1 KEGG: hch:HCH_02047 3-methyladenine DNA glycosylase; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase YP_957448.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: cya:CYA_1076 4'-phosphopantetheinyl transferase family protein YP_957449.1 KEGG: rxy:Rxyl_2372 pyridoxamine 5'-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding YP_957450.1 PFAM: protein of unknown function DUF748; KEGG: ade:Adeh_3490 protein of unknown function DUF748 YP_957451.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: mca:MCA0827 HD domain protein YP_957452.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: abo:ABO_1918 short-chain dehydrogenase/reductase family YP_957453.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pat:Patl_1920 diguanylate cyclase YP_957454.1 PFAM: glutamine amidotransferase, class-II; KEGG: aeh:Mlg_1726 glutamine amidotransferase, class-II YP_957455.1 PFAM: protein of unknown function DUF472; KEGG: hch:HCH_05778 hypothetical protein YP_957456.1 KEGG: hch:HCH_01444 ATP-dependent transcriptional regulator YP_957457.1 PFAM: transposase, IS4 family protein; KEGG: pol:Bpro_5331 transposase, IS4 YP_957458.1 PFAM: regulatory protein, LuxR; KEGG: pen:PSEEN0911 transcriptional regulator, LuxR family YP_957459.1 KEGG: abo:ABO_1996 hypothetical protein YP_957460.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: abo:ABO_1995 transcriptional regulator, AraC family YP_957461.1 PFAM: TM2 domain containing protein+B7201; KEGG: pau:PA14_05210 hypothetical protein YP_957462.1 PFAM: protein of unknown function UPF0089; KEGG: abo:ABO_2742 acyltransferase YP_957463.1 PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; KEGG: hch:HCH_02114 permease of the major facilitator superfamily YP_957464.1 PFAM: nitroreductase; KEGG: reu:Reut_B3607 nitroreductase YP_957465.1 TIGRFAM: nitrite reductase [NAD(P)H], small subunit; KEGG: csa:Csal_1116 nitrite reductase (NAD(P)H) large subunit, NirD YP_957466.1 TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: ppu:PP_1705 nitrite reductase YP_957467.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rme:Rmet_4820 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_957468.1 PFAM: ANTAR domain protein; Nitrate and nitrite sensing domain protein; KEGG: aeh:Mlg_1708 response regulator receiver and ANTAR domain protein YP_957469.1 KEGG: tcx:Tcr_1155 nitrate transport ATP-binding subunits C and D; TIGRFAM: nitrate ABC transporter, ATPase subunits C and D; PFAM: ABC transporter related; SMART: AAA ATPase YP_957470.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vpa:VPA1057 putative nitrate transporter YP_957471.1 KEGG: abo:ABO_0851 nitrate transport ATP-binding protein YP_957472.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: csa:Csal_1119 molybdopterin oxidoreductase YP_957474.1 PFAM: protein of unknown function DUF796; KEGG: eca:ECA2866 hypothetical protein YP_957475.1 PFAM: protein kinase; protein phosphatase 2C domain protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: tbd:Tbd_1942 serine/threonine protein kinase YP_957476.1 PFAM: formate/nitrite transporter; KEGG: sde:Sde_2826 formate/nitrate transporter YP_957477.1 TIGRFAM: TonB family protein; KEGG: aeh:Mlg_1845 TonB family protein YP_957478.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: abo:ABO_1969 ferric siderophore transport system,innermembrane protein E YP_957479.1 KEGG: abo:ABO_1968 ferric siderophore transport system,innermembrane protein E YP_957480.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: aeh:Mlg_1848 MotA/TolQ/ExbB proton channel YP_957481.1 KEGG: rso:RS03713 probable transmembrane protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_957482.1 KEGG: ilo:IL2350 predicted permease YP_957483.1 PFAM: phage integrase family protein; KEGG: rme:Rmet_6252 phage integrase-like SAM-like YP_957484.1 PFAM: phage integrase family protein; KEGG: rme:Rmet_6253 phage integrase YP_957485.1 PFAM: phage integrase family protein; KEGG: sfr:Sfri_3481 phage integrase family protein YP_957486.1 PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; SMART: AAA ATPase; KEGG: bxe:Bxe_A1794 putative transposase-related ATP-binding subunit YP_957487.1 PFAM: Integrase, catalytic region; KEGG: eba:ebA2485 transposase YP_957489.1 KEGG: sfr:Sfri_3419 hypothetical protein YP_957490.1 PFAM: helicase domain protein; KEGG: sfr:Sfri_3418 type III restriction enzyme, res subunit YP_957491.1 KEGG: stm:PSLT048 alpha-helical coiled-coil protein YP_957492.1 PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: ilo:IL2420 EXOIII family exonuclease YP_957493.1 PFAM: metallophosphoesterase; KEGG: cps:CPS_1287 Ser/Thr protein phosphatase family protein YP_957496.1 PFAM: DNA polymerase, beta domain protein region YP_957498.1 KEGG: sru:SRU_0183 hypothetical protein YP_957500.1 KEGG: bxe:Bxe_B2856 hypothetical protein YP_957502.1 PFAM: phage integrase family protein; KEGG: pol:Bpro_1705 phage integrase YP_957503.1 PFAM: phage integrase family protein; KEGG: sfr:Sfri_3494 phage integrase family protein YP_957504.1 KEGG: sfr:Sfri_3493 hypothetical protein YP_957505.1 KEGG: vpa:VPA1267 hypothetical protein YP_957506.1 TIGRFAM: phosphonates metabolism transcriptional regulator PhnF; PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: tbd:Tbd_2301 transcriptional regulator, GntR family YP_957507.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: hne:HNE_2459 phosphonate ABC transporter, periplasmic phosphonate-binding protein YP_957508.1 KEGG: tcx:Tcr_2080 ABC transporter related; TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_957509.1 TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tcx:Tcr_2081 phosphonate uptake transporter YP_957510.1 KEGG: tbd:Tbd_2296 putative phosphonate metabolism protein PhnG; K06166 PhnG protein YP_957511.1 PFAM: phosphonate metabolism; KEGG: tbd:Tbd_2295 putative PhnH protein, phosphonate metabolism, function unknown YP_957512.1 PFAM: phosphonate metabolism; KEGG: tbd:Tbd_2294 phosphonate metabolism protein YP_957513.1 PFAM: phosphonate metabolism PhnJ; KEGG: tbd:Tbd_2293 phosphonate metabolism protein PhnJ YP_957514.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tbd:Tbd_2292 ABC phosphonate transport system ATPase YP_957515.1 KEGG: tcx:Tcr_2087 ABC transporter related; TIGRFAM: phosphonate C-P lyase system protein PhnL; PFAM: ABC transporter related; SMART: AAA ATPase YP_957516.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: tbd:Tbd_2290 amidohydrolase-like protein YP_957517.1 TIGRFAM: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; SMART: guanylate kinase/L-type calcium channel region; KEGG: tbd:Tbd_2289 guanylate kinase/L-type calcium channel region YP_957518.1 required for the use of phosphonates and phosphite as phosphorus sources YP_957519.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: tcx:Tcr_2091 hypothetical protein YP_957520.1 KEGG: cps:CPS_1634 hypothetical protein YP_957521.1 PFAM: Cold-shock protein, DNA-binding; KEGG: sit:TM1040_1324 hypothetical protein YP_957522.1 PFAM: KAP P-loop domain protein; KEGG: ecp:ECP_0278 truncated phage T7 exclusion protein YP_957523.1 PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases-like; KEGG: noc:Noc_2689 hypothetical protein YP_957525.1 KEGG: abo:ABO_2085 hypothetical protein YP_957526.1 PFAM: restriction modification system DNA specificity domain; KEGG: ccr:CC0621 type I restriction-modification system, S subunit YP_957527.1 PFAM: N-6 DNA methylase; KEGG: noc:Noc_2687 N-6 DNA methylase YP_957528.1 PFAM: Resolvase, N-terminal domain; KEGG: mag:amb3309 site-specific recombinase YP_957529.1 PFAM: Integrase, catalytic region; KEGG: pca:Pcar_0539 transposase YP_957530.1 PFAM: transposase IS3/IS911 family protein; KEGG: pca:Pcar_0540 transposase (class V) YP_957531.1 TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: ilo:IL1643 transcriptional regulator MerR YP_957532.1 PFAM: Mercuric transport protein MerT; KEGG: net:Neut_2570 mercuric transport protein MerT YP_957533.1 TIGRFAM: mercuric transport protein periplasmic component; PFAM: Heavy metal transport/detoxification protein; KEGG: ilo:IL1645 periplasmic mercuric ion binding protein, MerP YP_957534.1 KEGG: noc:Noc_2759 hypothetical protein YP_957535.1 TIGRFAM: mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: ilo:IL1646 mercuric ion reductase YP_957536.1 cleaves the carbon-mercury bond of organomercuric compounds YP_957537.1 KEGG: aeh:Mlg_1760 permease YP_957538.1 PFAM: Amidase; KEGG: dra:DR0235 6-aminohexanoate-cyclic-dimer hydrolase YP_957540.1 KEGG: gsu:GSU0474 sensory box/GGDEF family protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_957541.1 PFAM: response regulator receiver; KEGG: eba:ebD118 CheY-like response regulator domain YP_957542.1 KEGG: eba:ebA6478 sensory transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_957543.1 PFAM: GAF domain protein; HDOD; KEGG: hch:HCH_00258 predicted signal transduction protein YP_957544.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pau:PA14_72620 putative ATP-binding component of ABC transporter YP_957545.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfo:Pfl_0066 binding-protein-dependent transport systems inner membrane component YP_957546.1 PFAM: NLPA lipoprotein; KEGG: pau:PA14_72640 putative ABC transporter, periplasmic binding protein YP_957547.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: ppu:PP_0235 antioxidant protein LsfA YP_957548.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: sfr:Sfri_3541 amino acid carrier protein YP_957549.1 PFAM: CBS domain containing protein; KEGG: abo:ABO_2557 CBS domain protein, putative YP_957550.1 KEGG: pfo:Pfl_1126 putative esterase; TIGRFAM: helix-turn-helix, Fis-type; PFAM: putative esterase YP_957551.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; KEGG: rfr:Rfer_2773 hypothetical protein YP_957552.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pha:PSHAa2463 hypothetical protein YP_957553.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO2295 MATE efflux family protein YP_957554.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: aeh:Mlg_1597 protein of unknown function DUF6, transmembrane YP_957555.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; KEGG: pen:PSEEN3931 aerotaxis receptor YP_957556.1 PFAM: sodium:neurotransmitter symporter; KEGG: csa:Csal_3274 sodium:neurotransmitter symporter YP_957557.1 KEGG: hch:HCH_04531 hypothetical protein YP_957558.1 KEGG: nfa:nfa23590 putative transcriptional regulator YP_957559.1 3'-5' exonuclease of DNA polymerase III YP_957560.1 PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294, nucleotidyltransferase putative; KEGG: csa:Csal_0978 cyclic nucleotide-binding domain (cNMP-BD) protein YP_957561.1 PFAM: cobalbumin biosynthesis enzyme; KEGG: abo:ABO_2380 CobU YP_957562.1 PFAM: Phosphoglycerate mutase; KEGG: abo:ABO_2379 alpha-ribazole-5'-phosphate phosphatase, putative YP_957563.1 PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; KEGG: abo:ABO_2378 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase YP_957564.1 CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group YP_957565.1 PFAM: aminotransferase, class I and II; KEGG: aeh:Mlg_2819 aminotransferase, class I and II YP_957566.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: abo:ABO_2371 TonB-dependent receptor protein YP_957567.1 PFAM: periplasmic binding protein; KEGG: abo:ABO_2370 Fe3+-hydroxamate ABC transporter periplasmic binding protein YP_957568.1 PFAM: transport system permease protein; KEGG: aeh:Mlg_2821 transport system permease protein YP_957569.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: abo:ABO_2368 probable ATP-binding ABC transporter protein YP_957570.1 PFAM: Cobyrinic acid a,c-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: abo:ABO_2367 acid--ammonia (or amine) ligases (amide synthases) YP_957571.1 KEGG: abo:ABO_2366 cob(I)yrinic acid a,c-diamide adenosyltransferase; TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YP_957572.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation YP_957573.1 KEGG: ilo:IL1779 3-methyladenine DNA glycosylase homolog YP_957574.1 TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS; KEGG: abo:ABO_0147 cobalamin 5'-phosphate synthase YP_957575.1 PFAM: glycosyl transferase, family 39; KEGG: she:Shewmr4_3882 glycosyl transferase, family 39 YP_957576.1 KEGG: she:Shewmr4_3883 hypothetical protein YP_957577.1 PFAM: glycosyl transferase, family 2; KEGG: shm:Shewmr7_3977 glycosyl transferase, family 2 YP_957578.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: hch:HCH_06619 signal transduction histidine kinase YP_957579.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pau:PA14_63150 two-component response regulator YP_957580.1 PFAM: glycosyl transferase, family 39; KEGG: pau:PA14_63700 hypothetical protein YP_957581.1 PFAM: glycosyl transferase, family 2; KEGG: net:Neut_0041 glycosyl transferase, family 2 YP_957582.1 PFAM: GtrA family protein; KEGG: sde:Sde_0136 hypothetical protein YP_957583.1 KEGG: eba:ebA6243 hypothetical protein YP_957584.1 PFAM: AMP-dependent synthetase and ligase; Haem oxygenase; KEGG: vvy:VVA0117 long-chain acyl-CoA synthetase YP_957585.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: ppu:PP_2711 short chain dehydrogenase YP_957586.1 KEGG: eba:ebA6236 hypothetical protein YP_957587.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; PAS fold-3 domain protein; KEGG: aeh:Mlg_1619 diguanylate cyclase with PAS/PAC sensor YP_957588.1 PFAM: beta-lactamase domain protein; KEGG: aeh:Mlg_0830 beta-lactamase domain protein YP_957589.1 TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; sulphate transporter; KEGG: abo:ABO_1943 sulfate transporter 1.3 YP_957590.1 KEGG: pau:PA14_58810 hypothetical protein YP_957591.1 KEGG: dar:Daro_3990 PAS:GGDEF; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_957592.1 PFAM: response regulator receiver; helix-turn-helix, Fis-type; KEGG: hch:HCH_01391 response regulator consisting of a CheY-like receiver domain and a fis-type HTH domain YP_957593.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: hch:HCH_01390 signal transduction histidine kinase YP_957594.1 KEGG: aeh:Mlg_2122 phosphoenolpyruvate synthase YP_957595.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer YP_957596.1 PFAM: TonB-dependent receptor; KEGG: tcx:Tcr_1564 TonB-dependent receptor YP_957597.1 PFAM: acriflavin resistance protein; KEGG: vch:VCA0638 transporter, AcrB/D/F family YP_957598.1 PFAM: Ion transport 2 domain protein,; KEGG: ppu:PP_3293 hypothetical protein YP_957599.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: noc:Noc_2937 secretion protein HlyD YP_957600.1 PFAM: acriflavin resistance protein; KEGG: noc:Noc_2936 acriflavin resistance protein YP_957601.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_0080 ABC transporter related YP_957602.1 PFAM: protein of unknown function DUF214; KEGG: rsp:RSP_1541 putative ABC transporter, fused inner membrane subunits YP_957603.1 KEGG: rpd:RPD_4398 hypothetical protein YP_957604.1 PFAM: Rh family protein/ammonium transporter; KEGG: hch:HCH_02676 ammonia permease YP_957605.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Vibrio parahaemolyticus protein is associated with the polar flagella YP_957606.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: hch:HCH_05863 flagellar motor component YP_957607.1 PFAM: protein of unknown function DUF1232; KEGG: sru:SRU_1220 protein of unknown function (DUF1232) family YP_957608.1 KEGG: ilo:IL2050 hypothetical protein YP_957609.1 PFAM: DTW domain containing protein; KEGG: pha:PSHAa1321 hypothetical protein YP_957610.1 PFAM: FAD dependent oxidoreductase; KEGG: hch:HCH_01940 phytoene dehydrogenase and related protein YP_957611.1 KEGG: abo:ABO_2340 hypothetical protein YP_957612.1 KEGG: pat:Patl_0152 deoxyribodipyrimidine photolyase; TIGRFAM: DNA photolyase, FAD- binding- domain protein; PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein YP_957613.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pau:PA14_17400 alcohol dehydrogenase class III YP_957614.1 PFAM: OmpA/MotB domain protein; KEGG: aeh:Mlg_2831 OmpA/MotB domain protein YP_957615.1 KEGG: rru:Rru_A1074 MotA/TolQ/ExbB proton channel family protein YP_957616.1 PFAM: ThiJ/PfpI domain protein; KEGG: bte:BTH_II1700 DJ-1/PfpI family protein YP_957617.1 SMART: extracellular solute-binding protein, family 3; KEGG: dvu:DVUA0150 bacterial extracellular solute-binding protein, family 3 YP_957618.1 PFAM: cytochrome B561; KEGG: mag:amb0750 cytochrome b YP_957619.1 PFAM: cytochrome c, class II; KEGG: mag:amb0751 cytochrome c' precursor YP_957620.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: rfr:Rfer_0061 phenylacetic acid degradation-related protein YP_957621.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: hch:HCH_02459 HD-GYP domain YP_957622.1 KEGG: hch:HCH_06974 ABC-type amino acid transport/signal transduction system, periplasmic component/domain YP_957623.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: shm:Shewmr7_2298 diguanylate cyclase YP_957624.1 PFAM: SEC-C motif domain protein; KEGG: abo:ABO_0301 hypothetical protein YP_957625.1 PFAM: Rhodanese domain protein; KEGG: noc:Noc_2007 metallo-beta-lactamase family protein YP_957626.1 TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6, transmembrane; KEGG: csa:Csal_1952 RarD protein YP_957627.1 KEGG: pat:Patl_1765 hypothetical protein YP_957628.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: ppr:PBPRA1296 hypothetical transcriptional regulator YP_957629.1 PFAM: cation efflux protein; KEGG: vch:VCA0834 hypothetical protein YP_957630.1 PFAM: CHAD domain containing protein; Phosphoglycerate mutase; KEGG: mca:MCA3096 phosphoglycerate mutase family domain protein YP_957631.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: ppr:PBPRA2145 hypothetical methyl-accepting chemotaxis protein YP_957632.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: vpa:VP1911 extracellular solute-binding protein, family 7 YP_957633.1 functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase YP_957634.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pcr:Pcryo_0238 binding-protein-dependent transport systems inner membrane component YP_957635.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component YP_957636.1 PFAM: extracellular solute-binding protein, family 1; KEGG: pcr:Pcryo_2162 extracellular solute-binding protein, family 1 YP_957637.1 PFAM: extracellular solute-binding protein, family 1; KEGG: hch:HCH_01471 spermidine/putrescine-binding periplasmic protein YP_957638.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sit:TM1040_3636 ABC transporter related YP_957639.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_01473 ABC-type spermidine/putrescine transport system, permease component I YP_957640.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_3889 binding-protein-dependent transport systems inner membrane component YP_957641.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: syn:sll1687 hypothetical protein YP_957642.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: sme:SMc04263 putative amino acid carrier transmembrane protein YP_957643.1 PFAM: UspA domain protein; KEGG: sil:SPO1144 universal stress protein family protein YP_957644.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: sil:SPO1145 TRAP dicarboxylate transporter, DctM subunit YP_957645.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: sil:SPO1146 TRAP dicarboxylate transporter, DctQ subunit YP_957646.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: sil:SPO1147 TRAP dicarboxylate transporter, DctP subunit YP_957647.1 KEGG: aeh:Mlg_2832 hypothetical protein YP_957648.1 PFAM: luciferase family protein; KEGG: abo:ABO_0676 hypothetical protein YP_957649.1 KEGG: hch:HCH_00409 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases; TIGRFAM: NAD pyrophosphatase/5'-nucleotidase NadN; PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein YP_957650.1 PFAM: cellulosome enzyme, dockerin type I; Endonuclease/exonuclease/phosphatase; KEGG: hch:HCH_06552 predicted extracellular nuclease YP_957651.1 PFAM: glutathione peroxidase; KEGG: shm:Shewmr7_1267 glutathione peroxidase YP_957652.1 PFAM: MscS Mechanosensitive ion channel; KEGG: par:Psyc_0767 small-conductance mechanosensitive ion channel YP_957653.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: neu:NE2401 generic methyltransferase YP_957654.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pau:PA14_63070 putative transcriptional regulator, GntR family YP_957655.1 TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: csa:Csal_2686 L-lactate transport YP_957656.1 PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: pfo:Pfl_0752 protein of unknown function DUF224, cysteine-rich region YP_957657.1 TIGRFAM: iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pfo:Pfl_0751 iron-sulfur cluster binding protein YP_957658.1 PFAM: protein of unknown function DUF162; KEGG: pfl:PFL_0814 hypothetical protein YP_957659.1 PFAM: NAD(P) transhydrogenase, beta subunit; KEGG: abo:ABO_1327 pyridine nucleotide transhydrogenase, B subunit YP_957660.1 KEGG: ana:asl3409 nicotinamide nucleotide transhydrogenase, subunit alpha YP_957661.1 PFAM: alanine dehydrogenase/PNT domain protein; KEGG: aba:Acid345_4187 NAD(P)(+) transhydrogenase (AB-specific) YP_957662.1 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate YP_957663.1 PFAM: nitroreductase; KEGG: csa:Csal_0202 nitroreductase YP_957664.1 PFAM: Di-haem cytochrome c peroxidase; KEGG: rru:Rru_A1789 cytochrome-c peroxidase YP_957665.1 KEGG: tcx:Tcr_1529 rhodanese-like YP_957666.1 PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: rpe:RPE_3085 C4-dicarboxylate transporter/malic acid transport protein YP_957667.1 KEGG: rde:RD1_0792 hypothetical protein YP_957668.1 KEGG: rfr:Rfer_3635 cytochrome c family protein YP_957669.1 KEGG: rfr:Rfer_3634 cytochrome b561 YP_957670.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pfl:PFL_2564 hypothetical protein YP_957671.1 PFAM: beta-lactamase domain protein; KEGG: aeh:Mlg_0830 beta-lactamase domain protein YP_957672.1 PFAM: protein of unknown function DUF442; KEGG: mfa:Mfla_1813 protein of unknown function DUF442 YP_957673.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rpb:RPB_3015 peroxidase YP_957674.1 KEGG: abo:ABO_0138 hypothetical protein YP_957675.1 PFAM: transposase, IS4 family protein; KEGG: sme:SMc03260 putative transposase for insertion sequence ISRM17 YP_957676.1 KEGG: abo:ABO_0138 hypothetical protein YP_957677.1 PFAM: aminoglycoside phosphotransferase; fructosamine kinase; KEGG: sde:Sde_3980 tRNA modification GTPase TrmE YP_957678.1 PFAM: protein of unknown function DUF323; Methyltransferase type 11; Methyltransferase type 12; KEGG: nmu:Nmul_A2257 protein of unknown function DUF323 YP_957679.1 PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; KEGG: bha:BH3112 rRNA methylase YP_957680.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: sde:Sde_2721 ribosomal RNA methyltransferase RrmJ/FtsJ YP_957681.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; KEGG: pen:PSEEN3931 aerotaxis receptor YP_957682.1 KEGG: ilo:IL0032 methyl-accepting chemotaxis protein (PAS/PAC and MSP doamins) YP_957683.1 KEGG: sru:SRU_1567 hypothetical protein YP_957684.1 KEGG: bpa:BPP0377 hypothetical protein YP_957685.1 KEGG: bpa:BPP0378 hypothetical protein YP_957686.1 PFAM: phage integrase family protein; KEGG: hch:HCH_00623 integrase YP_957687.1 KEGG: pfo:Pfl_0744 hypothetical protein YP_957688.1 PFAM: plasmid recombination enzyme; KEGG: ana:alr7199 plasmid recombinant protein YP_957690.1 PFAM: DNA polymerase, beta domain protein region YP_957691.1 PFAM: Integrase, catalytic region; KEGG: sfr:Sfri_3960 integrase, catalytic region YP_957692.1 PFAM: transposase IS3/IS911 family protein; KEGG: son:SO4268 ISSod2, transposase OrfA YP_957693.1 KEGG: hin:HI0666 hypothetical protein YP_957694.1 PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: ilo:IL2420 EXOIII family exonuclease YP_957695.1 PFAM: metallophosphoesterase; KEGG: bbr:BB3098 serine/threonine protein phosphatase 1 YP_957696.1 PFAM: transposase IS3/IS911 family protein; KEGG: tcx:Tcr_1853 transposase IS3/IS911 YP_957697.1 PFAM: Integrase, catalytic region; KEGG: sfx:S0235 IS911 orfA YP_957698.1 KEGG: eba:p2A163 transposase, similar to IS885 YP_957699.1 PFAM: Resolvase, N-terminal domain; KEGG: mmr:Mmar10_1503 resolvase YP_957700.1 PFAM: Integrase, catalytic region; KEGG: eba:ebA2485 transposase YP_957701.1 PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; SMART: AAA ATPase; KEGG: hch:HCH_06235 IstB helper protein, IS21 family YP_957702.1 PFAM: restriction modification system DNA specificity domain; N-6 DNA methylase; KEGG: pcr:Pcryo_2366 N-6 DNA methylase YP_957703.1 PFAM: N-6 DNA methylase; KEGG: noc:Noc_2687 N-6 DNA methylase YP_957704.1 PFAM: restriction modification system DNA specificity domain; KEGG: rha:RHA1_ro11152 type I restriction-modification system specificity subunit YP_957705.1 PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases-like; KEGG: noc:Noc_2689 hypothetical protein YP_957707.1 PFAM: protein of unknown function DUF1508; KEGG: pfl:PFL_1392 hypothetical protein YP_957708.1 KEGG: shm:Shewmr7_1781 hypothetical protein YP_957710.1 KEGG: cps:CPS_1634 hypothetical protein YP_957711.1 PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: pat:Patl_4128 glutathione S-transferase-like YP_957712.1 KEGG: jan:Jann_4157 anti-sigma factor, ChrR YP_957713.1 PFAM: regulatory protein, TetR; KEGG: ret:RHE_CH02697 probable transcriptional regulator protein, TetR family YP_957714.1 PFAM: dienelactone hydrolase; KEGG: gsu:GSU2536 dienelactone hydrolase family protein YP_957715.1 PFAM: aldo/keto reductase; KEGG: rsp:RSP_3201 putative oxidoreductase YP_957716.1 PFAM: acriflavin resistance protein; KEGG: tcx:Tcr_1703 acriflavin resistance protein YP_957717.1 KEGG: tbd:Tbd_2532 secretion protein HlyD YP_957718.1 PFAM: alpha/beta hydrolase fold; KEGG: ccr:CC0355 hydrolase, putative YP_957719.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: sfr:Sfri_1524 thioesterase superfamily protein YP_957720.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: rsp:RSP_2202 hypothetical protein YP_957721.1 PFAM: regulatory protein, TetR; KEGG: abo:ABO_0198 transcriptional regulator, TetR family YP_957722.1 PFAM: OmpW family protein; KEGG: atc:AGR_L_3239 hypothetical outer-membrane protein Y4MB precursor YP_957723.1 PFAM: transposase, IS4 family protein; KEGG: pol:Bpro_5331 transposase, IS4 YP_957724.1 PFAM: AMP-dependent synthetase and ligase; KEGG: sil:SPO2045 medium-chain-fatty-acid--CoA ligase YP_957725.1 PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: abo:ABO_2710 alcohol dehydrogenase YP_957726.1 PFAM: aldehyde dehydrogenase; KEGG: abo:ABO_2709 aldehyde dehydrogenase (NAD) YP_957727.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: abo:ABO_2708 rubredoxin YP_957728.1 PFAM: fatty acid desaturase; KEGG: abo:ABO_2707 alkane 1-monooxygenase YP_957729.1 PFAM: regulatory protein, LuxR; KEGG: abo:ABO_2706 alkB1GHJ regulator YP_957730.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rpa:RPA3782 putative rubredoxin reductase YP_957731.1 KEGG: eba:p2A202 transposase YP_957732.1 N-acetyldiaminobutyrate dehydratase; catalyzes the formation of the osmoprotectant ecotoine from gamma-N-acetyl-alpha,gamma-diaminobutyric acid YP_957733.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: mlo:mll6421 hypothetical protein YP_957734.1 PFAM: YaeQ family protein; KEGG: hch:HCH_00909 hypothetical protein YP_957735.1 KEGG: csa:Csal_0374 LrgA YP_957736.1 PFAM: LrgB family protein; KEGG: csa:Csal_0373 LrgB-like protein YP_957737.1 PFAM: extracellular solute-binding protein, family 5; KEGG: csa:Csal_1873 extracellular solute-binding protein, family 5 YP_957738.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csa:Csal_1872 binding-protein-dependent transport systems inner membrane component YP_957739.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csa:Csal_1871 binding-protein-dependent transport systems inner membrane component YP_957740.1 KEGG: csa:Csal_1870 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase YP_957741.1 KEGG: csa:Csal_1869 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase YP_957742.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: csa:Csal_1868 transcriptional regulator, LysR family YP_957743.1 catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters YP_957744.1 PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: noc:Noc_1692 BFD-like (2Fe-2S)-binding region YP_957745.1 TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; KEGG: hch:HCH_06842 bacterioferritin YP_957746.1 PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: hch:HCH_06439 phosphomannomutase YP_957747.1 PFAM: phospholipase A1; KEGG: hch:HCH_05407 outer membrane phospholipase A YP_957748.1 KEGG: hch:HCH_06437 hypothetical protein YP_957749.1 PFAM: cytochrome c, class I; KEGG: abo:ABO_2540 cytochrome c5, putative YP_957750.1 TIGRFAM: ATP-dependent DNA helicase Rep; PFAM: UvrD/REP helicase; KEGG: hch:HCH_06427 ATP-dependent DNA helicase Rep YP_957751.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: hch:HCH_06424 FOG: EAL domain YP_957752.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase, RNase H domain protein fold; KEGG: hch:HCH_06423 transcriptional accessory protein YP_957753.1 involved in the first step of glutathione biosynthesis YP_957754.1 KEGG: hch:HCH_06421 hypothetical protein YP_957755.1 PFAM: flagellar basal body-associated protein FliL; KEGG: hch:HCH_06420 flagellar basal body-associated protein YP_957756.1 PFAM: Disulphide bond formation protein DsbB; KEGG: hch:HCH_06418 disulfide bond formation protein DsbB YP_957757.1 binds specifically to the major sigma factor sigma 70; active in stationary phase YP_957758.1 PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase, FKBP-type; KEGG: hch:HCH_00278 FKBP-type peptidyl-prolyl cis-trans isomerases 1 YP_957760.1 KEGG: hch:HCH_00280 hypothetical protein YP_957761.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: csa:Csal_3136 ABC transporter related YP_957762.1 PFAM: Ppx/GppA phosphatase; KEGG: hch:HCH_00283 exopolyphosphatase YP_957763.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: pau:PA14_69200 thioredoxin YP_957764.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: rsp:RSP_0738 molybdopterin-guanine dinucleotide biosynthesis protein A YP_957765.1 PFAM: molybdopterin biosynthesis MoaE; KEGG: hch:HCH_05229 molybdopterin converting factor, large subunit YP_957766.1 TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: mfa:Mfla_1262 molybdopterin converting factor, subunit 1 YP_957767.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: hch:HCH_04899 molybdopterin biosynthesis enzyme YP_957768.1 TIGRFAM: molybdenum cofactor synthesis domain; molybdenum cofactor biosynthesis protein B; PFAM: molybdopterin binding domain; KEGG: hch:HCH_04900 molybdopterin biosynthesis enzyme YP_957769.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_957770.1 TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; KEGG: abo:ABO_2465 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_957771.1 catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose YP_957772.1 PFAM: HemY domain protein; Tetratricopeptide TPR_2 repeat protein; KEGG: hch:HCH_00288 uncharacterized enzyme of heme biosynthesis YP_957773.1 PFAM: protein of unknown function DUF513, hemX; KEGG: hch:HCH_00289 uncharacterized enzyme of heme biosynthesis YP_957774.1 PFAM: Uroporphyrinogen III synthase HEM4; KEGG: hch:HCH_00290 uroporphyrinogen-III synthase YP_957775.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_957776.1 PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: sde:Sde_3668 response regulator receiver domain protein (CheY-like) YP_957777.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase internal region; KEGG: hch:HCH_00293 predicted signal transduction protein with a C-terminal ATPase domain YP_957778.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_957779.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; KEGG: pau:PA14_49160 hypothetical protein YP_957780.1 catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP YP_957782.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: vpa:VP2984 diaminopimelate decarboxylase YP_957783.1 PFAM: diaminopimelate epimerase; KEGG: hch:HCH_00298 diaminopimelate epimerase YP_957784.1 PFAM: protein of unknown function DUF484; KEGG: hch:HCH_00299 hypothetical protein YP_957785.1 TIGRFAM: tyrosine recombinase XerC; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: aeh:Mlg_0063 tyrosine recombinase XerC YP_957786.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: hch:HCH_00302 response regulator containing a CheY-like receiver domain and a GGDEF domain YP_957787.1 KEGG: pha:PSHAa1976 hypothetical protein YP_957788.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: extracellular solute-binding protein, family 3; KEGG: hch:HCH_00309 signal transduction histidine kinase YP_957789.1 KEGG: hch:HCH_00310 hypothetical protein YP_957790.1 KEGG: hch:HCH_00316 hypothetical protein YP_957791.1 PFAM: Patatin; KEGG: pfo:Pfl_1471 patatin YP_957792.1 PFAM: regulatory protein GntR, HTH; KEGG: hch:HCH_00318 transcriptional regulator YP_957793.1 catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol) YP_957794.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: hch:HCH_00532 AraC-type DNA-binding domain-containing protein YP_957795.1 PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: hch:HCH_06647 predicted hydrolase or acyltransferase (alpha/beta hydrolase superfamily) YP_957796.1 PFAM: NHL repeat containing protein; Strictosidine synthase; SMP-30/Gluconolaconase/LRE domain protein; KEGG: pau:PA14_47490 putative enzyme YP_957797.1 PFAM: thioesterase superfamily protein; KEGG: hch:HCH_00150 predicted thioesterase YP_957798.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: hch:HCH_00322 NADPH:quinone reductase and related Zn-dependent oxidoreductase YP_957799.1 PFAM: sodium/hydrogen exchanger; KEGG: pat:Patl_1982 sodium/hydrogen exchanger YP_957800.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: hch:HCH_01659 dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis family 1 YP_957801.1 KEGG: aeh:Mlg_2406 hypothetical protein YP_957802.1 PFAM: regulatory protein, LuxR; KEGG: ppr:PBPRB1591 hypothetical protein YP_957803.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: sme:SMc02229 putative acyl-CoA dehydrogenase protein YP_957804.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ilo:IL2446 cell-cell signaling protein CsgA YP_957805.1 TIGRFAM: anti-sigma factor, putative, ChrR family; KEGG: hch:HCH_06623 anti-sigma factor YP_957806.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: hch:HCH_06622 DNA-directed RNA polymerase specialized sigma subunit sigma24-like protein YP_957807.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: pau:PA14_53520 transcriptional regulator OruR YP_957808.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis YP_957809.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine YP_957810.1 PFAM: Rh family protein/ammonium transporter; KEGG: pat:Patl_0492 Rh-like protein/ammonium transporter YP_957811.1 PFAM: nitrogen regulatory protein P-II; KEGG: hch:HCH_06398 nitrogen regulatory protein PII YP_957812.1 PFAM: protein of unknown function DUF526; KEGG: hch:HCH_06396 hypothetical protein YP_957813.1 KEGG: csa:Csal_3159 Mg chelatase-related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase YP_957814.1 KEGG: abo:ABO_2573 hypothetical protein; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: putative methyltransferase YP_957816.1 KEGG: ppu:PP_5101 oxygen-independent coproporphyrinogen III oxidase, putative; TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB YP_957817.1 TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; KEGG: sbo:SBO_3036 putative ribosomal protein YP_957818.1 KEGG: hch:HCH_06361 hypothetical protein YP_957819.1 TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW; Methyltransferase type 11; Methyltransferase type 12; KEGG: hch:HCH_06360 methionine biosynthesis protein MetW YP_957820.1 Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine YP_957821.1 KEGG: hch:HCH_06358 predicted GTPase (dynamin-related) YP_957822.1 PFAM: protein of unknown function YGGT; KEGG: pau:PA14_05130 putative YGGT family protein YP_957823.1 KEGG: csa:Csal_3055 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein YP_957824.1 PFAM: alanine racemase domain protein; KEGG: pfo:Pfl_5319 protein of unknown function UPF0001 YP_957825.1 KEGG: hch:HCH_06352 Tfp pilus assembly protein, pilus retraction ATPase PilT; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase YP_957826.1 KEGG: hch:HCH_06351 Tfp pilus assembly protein, ATPase PilU; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase YP_957827.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: csa:Csal_3004 membrane protein involved in aromatic hydrocarbon degradation YP_957828.1 KEGG: abo:ABO_0425 hypothetical protein YP_957829.1 KEGG: hch:HCH_06350 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2 YP_957830.1 KEGG: hch:HCH_06349 hypothetical protein YP_957831.1 PFAM: Fibronectin, type III domain protein; KEGG: sde:Sde_3542 general secretion pathway protein I YP_957832.1 KEGG: hch:HCH_06343 hypothetical protein YP_957833.1 KEGG: hch:HCH_06342 ATPase components of ABC transporters with duplicated ATPase domains YP_957834.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_957835.1 TIGRFAM: exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: hch:HCH_06339 exonuclease III YP_957836.1 KEGG: sde:Sde_3683 tRNA nucleotidyltransferase; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease YP_957837.1 PFAM: YicC N-terminal domain protein; domain of unknown function DUF1732; KEGG: hch:HCH_06336 uncharacterized stress-induced protein YP_957838.1 PFAM: phage integrase family protein; KEGG: shm:Shewmr7_0350 phage integrase family protein YP_957839.1 PFAM: Prophage CP4-57 regulatory; KEGG: shm:Shewmr7_0347 phage transcriptional regulator, AlpA YP_957840.1 PFAM: protein of unknown function DUF927; KEGG: shm:Shewmr7_0346 superfamily II helicase and inactivated derivatives-like protein YP_957842.1 TIGRFAM: DNA binding domain, excisionase family; PFAM: Prophage CP4-57 regulatory; KEGG: sat:SYN_01828 hypothetical cytosolic protein YP_957843.1 KEGG: pcr:Pcryo_1611 hypothetical protein YP_957844.1 KEGG: dvu:DVU2026 hypothetical protein YP_957845.1 KEGG: dvu:DVU2025 hypothetical protein YP_957846.1 PFAM: AAA-4 family protein; KEGG: noc:Noc_0057 hypothetical protein YP_957847.1 KEGG: psb:Psyr_3804 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like YP_957848.1 KEGG: plu:plu4453 hypothetical protein YP_957849.1 KEGG: dvu:DVU2022 hypothetical protein YP_957850.1 KEGG: cch:Cag_1226 hypothetical protein YP_957851.1 KEGG: plu:plu3301 hypothetical protein YP_957852.1 PFAM: PglZ domain; KEGG: dvu:DVU2020 hypothetical protein YP_957853.1 KEGG: dvu:DVU2019 hypothetical protein YP_957854.1 KEGG: bps:BPSL3258 hypothetical protein YP_957855.1 TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: net:Neut_2424 nuclease SbcCD, D subunit YP_957856.1 PFAM: SMC domain protein; KEGG: net:Neut_2425 SMC domain protein YP_957857.1 KEGG: eba:ebD63 hypothetical protein YP_957859.1 PFAM: Resolvase, N-terminal domain; KEGG: atc:AGR_L_1981 hypothetical protein YP_957863.1 KEGG: eba:p2A279 transposase YP_957864.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: sfr:Sfri_1662 transposase IS116/IS110/IS902 family protein YP_957865.1 KEGG: hch:HCH_05143 transcriptional regulator YP_957866.1 PFAM: UspA domain protein; KEGG: rpa:RPA4094 hypothetical protein YP_957867.1 PFAM: regulatory protein, MarR; KEGG: hch:HCH_05143 transcriptional regulator YP_957868.1 KEGG: csa:Csal_1299 hypothetical protein YP_957869.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: gme:Gmet_0809 secretion protein HlyD YP_957870.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: abo:ABO_0964 AcrB/AcrD/AcrFa family protein YP_957871.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: dvu:DVU0062 RND efflux system, outer membrane protein, NodT family YP_957872.1 KEGG: rxy:Rxyl_0088 regulatory protein, MarR YP_957873.1 PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: pat:Patl_4128 glutathione S-transferase-like YP_957874.1 KEGG: jan:Jann_4157 anti-sigma factor, ChrR YP_957875.1 PFAM: regulatory protein, TetR; KEGG: ret:RHE_CH02697 probable transcriptional regulator protein, TetR family YP_957876.1 PFAM: aldo/keto reductase; KEGG: rsp:RSP_3201 putative oxidoreductase YP_957877.1 PFAM: MltA-interacting MipA family protein; KEGG: csa:Csal_0351 MltA-interacting MipA YP_957878.1 PFAM: acriflavin resistance protein; KEGG: tcx:Tcr_1703 acriflavin resistance protein YP_957879.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: xfa:XF2084 component of multidrug efflux system YP_957880.1 PFAM: alpha/beta hydrolase fold; KEGG: ccr:CC0355 hydrolase, putative YP_957881.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: shm:Shewmr7_2382 thioesterase superfamily protein YP_957882.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: rsp:RSP_2202 hypothetical protein YP_957883.1 PFAM: regulatory protein, TetR; KEGG: abo:ABO_0198 transcriptional regulator, TetR family YP_957884.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: abo:ABO_0199 transcriptional regulator, AraC family YP_957885.1 PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; SMART: AAA ATPase; KEGG: hch:HCH_06235 IstB helper protein, IS21 family YP_957886.1 PFAM: Integrase, catalytic region; KEGG: eba:ebA2485 transposase YP_957887.1 PFAM: ferredoxin; KEGG: abo:ABO_0200 ferredoxin, 2Fe-2S YP_957888.1 PFAM: cytochrome P450; KEGG: abo:ABO_2288 cytochrome P450 YP_957889.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: abo:ABO_0203 FAD-dependent oxidoreductase family protein YP_957890.1 KEGG: eba:p2A163 transposase, similar to IS885 YP_957891.1 PFAM: transposase, IS4 family protein; KEGG: psp:PSPPH_3329 ISPsy2, transposase YP_957892.1 PFAM: transposase, IS4 family protein; KEGG: psp:PSPPH_3329 ISPsy2, transposase YP_957893.1 PFAM: AMP-dependent synthetase and ligase; KEGG: sil:SPO2045 medium-chain-fatty-acid--CoA ligase YP_957894.1 PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: abo:ABO_2710 alcohol dehydrogenase YP_957895.1 PFAM: aldehyde dehydrogenase; KEGG: abo:ABO_2709 aldehyde dehydrogenase (NAD) YP_957896.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: abo:ABO_2708 rubredoxin YP_957897.1 KEGG: eba:p2A163 transposase, similar to IS885 YP_957898.1 PFAM: fatty acid desaturase; KEGG: abo:ABO_2707 alkane 1-monooxygenase YP_957899.1 PFAM: regulatory protein, LuxR; KEGG: abo:ABO_2706 alkB1GHJ regulator YP_957900.1 KEGG: abo:ABO_2595 hypothetical protein YP_957901.1 KEGG: abo:ABO_0193 hypothetical protein YP_957902.1 KEGG: abo:ABO_0193 hypothetical protein YP_957903.1 KEGG: abo:ABO_0198 transcriptional regulator, TetR family YP_957904.1 N-acetyldiaminobutyrate dehydratase; catalyzes the formation of the osmoprotectant ecotoine from gamma-N-acetyl-alpha,gamma-diaminobutyric acid YP_957905.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: hne:HNE_2405 drug resistance transporter, EmrB/QacA family YP_957906.1 PFAM: secretion protein HlyD family protein; KEGG: hne:HNE_2404 transporter, membrane fusion protein (MFP) family YP_957907.1 PFAM: regulatory protein, MarR; KEGG: pfl:PFL_1580 transcriptional regulator, MarR family YP_957908.1 PFAM: UspA domain protein; KEGG: bxe:Bxe_A2474 putative universal stress protein, UspA YP_957909.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: neu:NE0552 hypothetical protein YP_957910.1 TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: aba:Acid345_2090 RelB antitoxin YP_957911.1 PFAM: phospholipase A1; KEGG: hch:HCH_05407 outer membrane phospholipase A YP_957912.1 PFAM: ABC-2 type transporter; KEGG: abo:ABO_1847 ABC transporter, ATP-binding protein, permease, putative YP_957913.1 PFAM: secretion protein HlyD family protein; KEGG: abo:ABO_1849 HlyD family secretion protein, putative YP_957914.1 PFAM: UspA domain protein; KEGG: pat:Patl_2103 hypothetical protein YP_957915.1 PFAM: transposase Tn3 family protein; KEGG: mfa:Mfla_1495 transposase Tn3 YP_957916.1 PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: rme:Rmet_6187 resolvase-like protein YP_957917.1 PFAM: transposase, IS4 family protein; KEGG: pol:Bpro_5331 transposase, IS4 YP_957918.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: gme:Gmet_2828 methyl-accepting chemotaxis sensory transducer YP_957919.1 KEGG: pau:PA14_70440 guanylate kinase; PFAM: guanylate kinase; SMART: guanylate kinase/L-type calcium channel region YP_957920.1 TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; KEGG: ppu:PP_5301 DNA-directed RNA polymerase, omega subunit YP_957921.1 KEGG: hch:HCH_06313 guanosine polyphosphate pyrophosphohydrolase/synthetases; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region YP_957922.1 TIGRFAM: putative endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: hch:HCH_06312 putative translation initiation inhibitor, YjgF family YP_957923.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: hch:HCH_06311 nucleoside-diphosphate-sugar epimerase YP_957924.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: hch:HCH_06310 transcriptional regulator YP_957925.1 catalyzes branch migration in Holliday junction intermediates YP_957926.1 PFAM: HDOD; KEGG: hch:HCH_06308 predicted signal transduction protein YP_957927.1 KEGG: hch:HCH_06306 hypothetical protein YP_957928.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: hch:HCH_06645 anaerobic dehydrogenase, typically selenocysteine-containing YP_957929.1 KEGG: abo:ABO_2595 hypothetical protein YP_957930.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: abo:ABO_0193 hypothetical protein YP_957931.1 PFAM: Integrase, catalytic region; KEGG: sfx:S0235 IS911 orfA YP_957932.1 PFAM: transposase IS3/IS911 family protein; KEGG: tcx:Tcr_1853 transposase IS3/IS911 YP_957933.1 PFAM: protein of unknown function DUF1555; KEGG: tbd:Tbd_0505 hypothetical protein YP_957936.1 PFAM: protein of unknown function DUF927; KEGG: tbd:Tbd_2819 hypothetical protein YP_957937.1 KEGG: neu:NE0233 toprim domain YP_957938.1 PFAM: Prophage CP4-57 regulatory; KEGG: sil:SPO3898 DNA-binding protein, putative YP_957942.1 PFAM: phage integrase family protein; KEGG: nmu:Nmul_A2184 phage integrase YP_957943.1 TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor RpoD domain protein; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70, non-essential domain protein; sigma-70 region 1.2; KEGG: hch:HCH_06274 RNA polymerase sigma-70 factor RpoD YP_957944.1 KEGG: hch:HCH_06273 DNA primase (bacterial type); TIGRFAM: DNA primase; PFAM: zinc finger, CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core, N-terminal domain; SMART: Toprim sub domain protein YP_957945.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_957946.1 KEGG: hch:HCH_06270 metal-dependent protease with possible chaperone activity; TIGRFAM: putative metalloendopeptidase, glycoprotease family; PFAM: peptidase M22, glycoprotease YP_957947.1 PFAM: protein of unknown function DUF205; KEGG: hch:HCH_06269 predicted membrane protein YP_957948.1 TIGRFAM: dihydroneopterin aldolase; KEGG: pau:PA14_07590 dihydroneopterin aldolase YP_957949.1 TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG: sde:Sde_0724 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase YP_957950.1 PFAM: phosphoglucose isomerase (PGI); KEGG: hch:HCH_06266 glucose-6-phosphate isomerase YP_957951.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_957952.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_957953.1 KEGG: pmu:PM0865 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK YP_957954.1 TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; KEGG: csa:Csal_3063 poly(A) polymerase YP_957955.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: hch:HCH_06261 sigma 54-dependent transcriptional activator containing CheY-like receiver domain YP_957956.1 KEGG: hch:HCH_06259 Na+/proline symporter; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_957957.1 KEGG: hch:HCH_06258 hypothetical protein YP_957958.1 PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: hch:HCH_06257 glutamyl-tRNA synthetase-related protein YP_957959.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger, DksA/TraR C4-type; KEGG: hch:HCH_06256 DnaK suppressor protein YP_957960.1 PFAM: sugar fermentation stimulation protein; KEGG: hch:HCH_06254 sugar fermentation stimulation protein YP_957961.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: abo:ABO_0349 Rieske 2Fe-2S family protein, putative YP_957962.1 PFAM: pentapeptide repeat protein; KEGG: hch:HCH_06252 uncharacterized low-complexity protein YP_957963.1 KEGG: pau:PA14_62230 hypothetical protein YP_957964.1 KEGG: pau:PA14_62200 penicillin-binding protein 1B; TIGRFAM: penicillin-binding protein 1B; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase YP_957965.1 KEGG: pfl:PFL_5257 hypothetical protein YP_957966.1 KEGG: tcx:Tcr_0552 putative lipoprotein YP_957967.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sde:Sde_2365 sigma-24 (FecI-like) YP_957968.1 KEGG: sde:Sde_2366 electron transport complex, RnfABCDGE type, A subunit YP_957970.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: sde:Sde_2369 hypothetical protein YP_957971.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway YP_957972.1 KEGG: pen:PSEEN4803 thiamin-phosphate pyrophosphorylase ThiE; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase YP_957973.1 PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: mca:MCA0629 phosphomethylpyrimidine kinase, putative YP_957974.1 PFAM: conserved hypothetical protein 701; KEGG: hch:HCH_06247 predicted membrane protein YP_957975.1 PFAM: Cl- channel, voltage-gated family protein; KEGG: hch:HCH_06246 chloride channel protein EriC YP_957976.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate YP_957977.1 KEGG: hch:HCH_06244 hypothetical protein YP_957978.1 PFAM: protein of unknown function DUF583; KEGG: hch:HCH_06243 integral membrane protein CcmA involved in cell shape determination YP_957979.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: dar:Daro_0653 HesB/YadR/YfhF YP_957980.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling YP_957981.1 PFAM: peptidase M23B; Opacity-associated protein A; KEGG: hch:HCH_06239 membrane protein related to metalloendopeptidase YP_957982.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_957983.1 KEGG: pau:PA14_61940 hypothetical protein YP_957984.1 KEGG: pae:PA4681 hypothetical protein YP_957985.1 KEGG: pau:PA14_61910 hypothetical protein YP_957987.1 TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; Helix-turn-helix, type 11 domain protein; KEGG: psb:Psyr_4564 biotin--acetyl-CoA-carboxylase ligase YP_957988.1 TIGRFAM: putative transcriptional activator, Baf family; PFAM: Bordetella pertussis Bvg accessory factor; KEGG: hch:HCH_06233 putative transcriptional regulator YP_957989.1 KEGG: hch:HCH_06232 hypothetical protein YP_957990.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_957991.1 Modulates Rho-dependent transcription termination YP_957992.1 PFAM: ribosomal protein L11; KEGG: csa:Csal_0410 ribosomal protein L11 YP_957993.1 PFAM: ribosomal protein L1; KEGG: hch:HCH_06227 ribosomal protein L1 YP_957994.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_957995.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_957996.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_957997.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_957998.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_957999.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_958000.1 TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; elongation factor G, domain IV; KEGG: hch:HCH_06220 translation elongation factor G YP_958001.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_958002.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_958003.1 PFAM: ribosomal protein L3; KEGG: abo:ABO_0397 50S ribosomal protein L3 YP_958004.1 PFAM: ribosomal protein L4/L1e; KEGG: hch:HCH_06216 ribosomal protein L4 YP_958005.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_958006.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_958007.1 TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; KEGG: hch:HCH_06213 ribosomal protein S19 YP_958008.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_958009.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_958010.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_958011.1 PFAM: ribosomal protein L29; KEGG: hch:HCH_06209 ribosomal protein L29 YP_958012.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_958013.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_958014.1 KEGG: csa:Csal_0432 ribosomal protein L24; TIGRFAM: ribosomal protein L24; PFAM: KOW domain protein; SMART: KOW (Kyrpides, Ouzounis, Woese) domain protein YP_958015.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_958016.1 PFAM: ribosomal protein S14; KEGG: hch:HCH_06204 ribosomal protein S14 YP_958017.1 PFAM: ribosomal protein S8; KEGG: pau:PA14_08990 30S ribosomal protein S8 YP_958018.1 PFAM: ribosomal protein L6; KEGG: pfo:Pfl_5064 ribosomal protein L6 YP_958019.1 TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: hch:HCH_06200 ribosomal protein L18 YP_958020.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_958021.1 PFAM: ribosomal protein L30; KEGG: hch:HCH_10027 ribosomal protein L30 YP_958022.1 PFAM: ribosomal protein L15; KEGG: ppr:PBPRA0339 putative ribosomal protein L15 YP_958023.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_958024.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif YP_958025.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_958026.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_958027.1 PFAM: ribosomal protein S4; RNA-binding S4 domain protein; KEGG: hch:HCH_06194 ribosomal protein S4 YP_958028.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_958029.1 PFAM: ribosomal protein L17; KEGG: hch:HCH_06192 ribosomal protein L17 YP_958030.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: hch:HCH_06191 excinuclease ABC, A subunit YP_958031.1 PFAM: major facilitator superfamily MFS_1; KEGG: hch:HCH_06190 permease of the major facilitator superfamily YP_958032.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: hch:HCH_06189 single-stranded DNA-binding protein YP_958033.1 KEGG: hch:HCH_06157 hypothetical protein YP_958034.1 PFAM: Fimbrial assembly family protein; KEGG: vch:VC0399 MSHA biogenesis protein MshI YP_958035.1 KEGG: pca:Pcar_0383 hypothetical protein YP_958037.1 TIGRFAM: pilus (MSHA type) biogenesis protein MshL; PFAM: type II and III secretion system protein; Secretin domain protein; Secretin/TonB, short N-terminal domain; KEGG: hch:HCH_06153 type II secretory pathway, component PulD YP_958038.1 SMART: AAA ATPase; KEGG: hch:HCH_06152 type II secretory pathway, component ExeA (predicted ATPase) YP_958039.1 KEGG: hch:HCH_06150 FOG: TPR repeat YP_958040.1 PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; KEGG: hch:HCH_06149 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB YP_958041.1 PFAM: type II secretion system protein; KEGG: hch:HCH_06148 type II secretory pathway, component PulF YP_958043.1 KEGG: vfi:VF1637 hypothetical protein YP_958044.1 KEGG: hch:HCH_06146 type II secretory pathway, pseudopilin PulG YP_958045.1 KEGG: hch:HCH_06144 type II secretory pathway, pseudopilin PulG YP_958046.1 KEGG: hch:HCH_06143 hypothetical protein YP_958047.1 KEGG: hch:HCH_06142 hypothetical protein YP_958048.1 KEGG: hch:HCH_06141 hypothetical protein YP_958049.1 KEGG: she:Shewmr4_3473 MSHA biogenesis protein MshQ YP_958050.1 KEGG: hch:HCH_01033 nitrogen regulation protein NR(I); TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase YP_958051.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: hch:HCH_01034 signal transduction histidine kinase, nitrogen specific YP_958052.1 KEGG: hch:HCH_01035 hypothetical protein YP_958053.1 KEGG: hch:HCH_01036 glutamine synthetase, type I; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp YP_958054.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: pau:PA14_67560 GTP-binding protein TypA/BipA YP_958055.1 KEGG: ppu:PP_5028 proline iminopeptidase; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold YP_958056.1 PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: sgl:SG2225 hypothetical protein YP_958057.1 KEGG: hch:HCH_01041 outer membrane protein (porin) YP_958058.1 PFAM: adenylate cyclase; KEGG: psp:PSPPH_0240 hypothetical protein YP_958059.1 PFAM: Ion transport 2 domain protein,; KEGG: oih:OB3278 potassium channel protein YP_958060.1 PFAM: glutamate-ammonia ligase adenylyltransferase; KEGG: pen:PSEEN5144 glutamine synthetase adenylyltransferase YP_958061.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_958062.1 catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position YP_958063.1 PFAM: glycosyl transferase, group 1; KEGG: sgl:SG2202 putative lipopolysaccharide glycosyltransferase YP_958064.1 PFAM: O-antigen polymerase; KEGG: rso:RSc2204 probable transmembrane protein YP_958065.1 PFAM: WavE lipopolysaccharide synthesis; KEGG: vch:VC0229 hypothetical protein YP_958068.1 TIGRFAM: D,D-heptose 1,7-bisphosphate phosphatase; histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: ppr:PBPRA2939 putative histidinol phosphatase-related protein YP_958069.1 PFAM: glycosyl transferase, family 9; KEGG: pha:PSHAa2318 ADP-heptose:LPS heptosyltransferase YP_958070.1 catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose YP_958071.1 TIGRFAM: phosphoheptose isomerase; PFAM: sugar isomerase (SIS); KEGG: pha:PSHAa2324 phosphoheptose isomerase YP_958072.1 TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: csa:Csal_0008 ADP-L-glycero-D-manno-heptose-6-epimerase YP_958073.1 TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase, family 9; KEGG: csa:Csal_0009 lipopolysaccharide heptosyltransferase II YP_958074.1 PFAM: glycosyl transferase, family 2; KEGG: hdu:HD1201 UDP-glucose--Lipooligosaccharide beta 1-4 glucosyltransferase YP_958075.1 PFAM: glycosyl transferase, group 1; KEGG: ppr:PBPRA0216 putative capsular polysaccharide biosynthesis protein YP_958076.1 PFAM: glycosyl transferase, group 1; KEGG: vfi:VF0133 glycosyltransferase YP_958077.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: hch:HCH_00023 lauroyl/myristoyl acyltransferase YP_958078.1 KEGG: csa:Csal_1692 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase, type II; Nucleotidyl transferase; Cupin 2, conserved barrel domain protein YP_958079.1 KEGG: ssn:SSO_3355 hypothetical protein YP_958081.1 PFAM: glycosyl transferase, group 1; KEGG: aci:ACIAD0602 putative glycosyltransferase YP_958082.1 PFAM: glycosyl transferase, group 1; KEGG: aci:ACIAD0482 putative glycosyltransferase YP_958083.1 KEGG: tbd:Tbd_1867 hypothetical protein YP_958084.1 TIGRFAM: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; PFAM: lipid A biosynthesis acyltransferase; KEGG: hch:HCH_01058 lauroyl/myristoyl acyltransferase YP_958085.1 PFAM: glycosyl transferase, group 1; Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: hch:HCH_05997 3-deoxy-D-manno-octulosonic-acid transferase YP_958086.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: hch:HCH_05996 outer membrane protein YP_958087.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_958088.1 PFAM: NUDIX hydrolase; KEGG: hch:HCH_05994 NTP pyrophosphohydrolase including oxidative damage repair enzyme YP_958089.1 PFAM: protein of unknown function DUF1249; KEGG: hch:HCH_05993 hypothetical protein YP_958090.1 PFAM: metallophosphoesterase; Calcineurin phosphoesterase C-terminal domain protein; KEGG: hch:HCH_05992 predicted phosphohydrolase YP_958091.1 KEGG: pst:PSPTO_3479 hypothetical protein YP_958092.1 KEGG: pfo:Pfl_5598 hypothetical protein YP_958093.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine YP_958094.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bur:Bcep18194_B0361 transcriptional regulator, LysR family YP_958095.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor YP_958096.1 PFAM: protein of unknown function Met10; conserved hypothetical protein 95; KEGG: tcx:Tcr_1849 methyltransferase small YP_958097.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: abo:ABO_2350 hypothetical protein YP_958098.1 hydrolyzes diadenosine polyphosphate YP_958099.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; GAF domain protein; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: hch:HCH_05983 signal transduction protein containing GAF and PtsI domains YP_958100.1 PFAM: Patatin; KEGG: hch:HCH_05982 predicted esterase of the alpha-beta hydrolase superfamily YP_958101.1 heat shock protein involved in degradation of misfolded proteins YP_958102.1 heat shock protein involved in degradation of misfolded proteins YP_958103.1 PFAM: Sporulation domain protein; KEGG: hch:HCH_05978 cell division protein YP_958104.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_958105.1 PFAM: Ig domain protein, group 1 domain protein; KEGG: pat:Patl_2358 Ig-like, group 1 YP_958106.1 KEGG: pae:PA5050 primosomal protein N'; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like YP_958107.1 PFAM: ribosomal protein L31; KEGG: hch:HCH_05975 ribosomal protein L31 YP_958108.1 PFAM: malic enzyme domain protein; malic enzyme, NAD-binding; KEGG: hch:HCH_05974 malic enzyme YP_958109.1 KEGG: hch:HCH_05973 membrane carboxypeptidase/penicillin-binding protein; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase YP_958110.1 TIGRFAM: type IV pilus assembly protein PilM; KEGG: hch:HCH_05972 Tfp pilus assembly protein, ATPase PilM YP_958111.1 PFAM: Fimbrial assembly family protein; KEGG: hch:HCH_05971 Tfp pilus assembly protein PilN YP_958112.1 PFAM: Pilus assembly protein, PilO; KEGG: pae:PA5042 type 4 fimbrial biogenesis protein PilO YP_958113.1 PFAM: Pilus assembly protein, PilQ; KEGG: hch:HCH_10024 Tfp pilus assembly protein PilP YP_958114.1 TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB, short N-terminal domain; KEGG: hch:HCH_05969 type 4 fimbrial biogenesis protein PilQ YP_958115.1 PFAM: 3-dehydroquinate synthase; KEGG: pau:PA14_66600 3-dehydroquinate synthase YP_958116.1 PFAM: Sporulation domain protein; KEGG: aeh:Mlg_1631 sporulation domain protein YP_958117.1 catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate YP_958118.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate YP_958119.1 KEGG: hch:HCH_05963 uroporphyrinogen decarboxylase; TIGRFAM: uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D) YP_958120.1 PFAM: type IV pilus assembly PilZ; KEGG: pen:PSEEN0802 hypothetical protein YP_958122.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_958123.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_958124.1 PFAM: glycine hydroxymethyltransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase, class I and II; KEGG: pau:PA14_60890 glycine/serine hydroxymethyltransferase YP_958125.1 PFAM: ATP-cone domain protein; KEGG: psb:Psyr_4463 ATP-cone domain protein YP_958126.1 KEGG: aeh:Mlg_0375 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein YP_958127.1 bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis YP_958128.1 PFAM: 6,7-dimethyl-8-ribityllumazine synthase; KEGG: pen:PSEEN0591 6,7-dimethyl-8-ribityllumazine synthase (lumazine synthase)(riboflavin synthase beta chain) YP_958129.1 TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: pau:PA14_11450 NusB YP_958130.1 KEGG: pae:PA4051 thiamine monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein YP_958131.1 PFAM: phosphatidylglycerophosphatase A; KEGG: pfo:Pfl_5013 phosphatidylglycerophosphatase A YP_958132.1 KEGG: hch:HCH_05950 hypothetical protein YP_958133.1 KEGG: hch:HCH_05947 hypothetical protein YP_958134.1 PFAM: protein of unknown function UPF0089; KEGG: hch:HCH_05944 predicted membrane-associated, metal-dependent hydrolase YP_958135.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: mca:MCA2269 transcriptional regulator, LysR family YP_958136.1 KEGG: sit:TM1040_2583 putative glutathione S-transferase YP_958137.1 PFAM: Polyprenyl synthetase; KEGG: hch:HCH_05943 geranylgeranyl pyrophosphate synthase YP_958138.1 PFAM: ribosomal protein L21; KEGG: hch:HCH_05941 ribosomal protein L21 YP_958139.1 involved in the peptidyltransferase reaction during translation YP_958140.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_958141.2 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_958142.1 PFAM: ribosomal protein S20; KEGG: hch:HCH_05937 ribosomal protein S20 YP_958143.1 TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: hch:HCH_05935 integral membrane protein MviN YP_958144.1 KEGG: csa:Csal_0480 riboflavin biosynthesis protein RibF; TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase / FAD synthetase YP_958145.1 TIGRFAM: isoleucyl-tRNA synthetase; KEGG: hch:HCH_05933 isoleucyl-tRNA synthetase YP_958146.1 KEGG: csa:Csal_0482 lipoprotein signal peptidase; TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8, signal peptidase II YP_958147.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: psp:PSPPH_0723 peptidyl-prolyl cis-trans isomerase, FKBP-type YP_958148.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_958149.1 KEGG: pca:Pcar_2159 putative type-4 fimbrial pilin related signal peptide protein YP_958150.1 TIGRFAM: type IV pilus modification protein PilV; KEGG: noc:Noc_2271 type IV fimbrial biogenesis protein PilV YP_958151.1 KEGG: pca:Pcar_2157 type IV pilus assembly protein PilW YP_958152.1 KEGG: xfa:XF0031 PilX protein YP_958154.1 KEGG: pat:Patl_3171 Tfp pilus assembly protein tip-associated adhesin PilY1-like YP_958155.1 KEGG: noc:Noc_2275 general secretion pathway protein H YP_958156.1 KEGG: hch:HCH_10022 Tfp pilus assembly protein FimT YP_958157.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: hch:HCH_05925 sigma 54-dependent transcriptional activator containing CheY-like receiver domain YP_958158.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: hch:HCH_05924 signal transduction histidine kinase YP_958159.1 KEGG: hch:HCH_05923 NAD synthase; TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD+ synthase YP_958160.1 KEGG: hch:HCH_05922 DNA uptake lipoprotein YP_958161.1 KEGG: hch:HCH_05920 pseudouridylate synthases, 23S RNA-specific; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase YP_958162.1 PFAM: protein of unknown function DUF152; KEGG: cvi:CV2191 conserved hypothetical protein YP_958163.1 PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: hch:HCH_05918 ATPase with chaperone activity, ATP-binding subunit YP_958164.1 KEGG: hch:HCH_05917 hypothetical protein YP_958165.1 catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; also known as acetolactate synthase large subunit YP_958166.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_958167.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_958168.1 KEGG: hch:HCH_05913 CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_958169.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ YP_958170.1 PFAM: Ferric reductase domain protein transmembrane component, N-terminal domain; KEGG: xcv:XCV1687 hypothetical protein YP_958171.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: bxe:Bxe_C0885 transposase, TnpA YP_958172.1 KEGG: ilo:IL0633 lipoprotein signal peptidase; TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8, signal peptidase II YP_958173.1 KEGG: bxe:Bxe_C0883 heavy metal/H+ antiporter, CDF family YP_958174.1 PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; SMART: AAA ATPase; KEGG: hch:HCH_06235 IstB helper protein, IS21 family YP_958175.1 PFAM: Integrase, catalytic region; KEGG: hch:HCH_06236 transposase, IS21 family YP_958176.1 KEGG: bxe:Bxe_C0883 heavy metal/H+ antiporter, CDF family YP_958177.1 TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: abo:ABO_1367 transcriptional regulator, MerR family YP_958178.1 PFAM: response regulator receiver; KEGG: hch:HCH_04303 FOG: CheY-like receiver YP_958179.1 PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: hch:HCH_04306 signal transduction histidine kinase YP_958180.1 PFAM: TPR repeat-containing protein; response regulator receiver; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: hch:HCH_04305 FOG: CheY-like receiver YP_958181.1 TIGRFAM: PAS sensor protein; PFAM: Na+/solute symporter; response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: hch:HCH_05072 Na+/proline symporter YP_958182.1 KEGG: csa:Csal_0870 hypothetical protein YP_958183.1 PFAM: Na+/solute symporter; KEGG: csa:Csal_0871 Na+/solute symporter YP_958184.1 KEGG: csa:Csal_0872 hypothetical protein YP_958185.1 KEGG: ppu:PP_0353 exonuclease; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease YP_958186.1 PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294, nucleotidyltransferase putative; KEGG: pen:PSEEN5129 nucleotidyltransferase, CBS domain/cAMP binding YP_958187.1 PFAM: Smr protein/MutS2; KEGG: hch:HCH_05041 hypothetical protein YP_958188.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: hch:HCH_05037 aerobic-type carbon monoxide dehydrogenase small subunit CoxS/CutS-like protein YP_958189.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: hch:HCH_05036 aerobic-type carbon monoxide dehydrogenase large subunit CoxL/CutL-like protein YP_958190.1 PFAM: class II aldolase/adducin family protein; KEGG: hch:HCH_01844 ribulose-5-phosphate 4-epimerase and related epimerase and aldolases YP_958191.1 PFAM: Acireductone dioxygenase, ARD; KEGG: hch:HCH_01845 uncharacterized conserved protein, contains double-stranded beta-helix domain YP_958192.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: psb:Psyr_1857 HAD-superfamily hydrolase, subfamily IA, variant 1:2,3-diketo-5-methylthio-1-phosphopentane phosphatase YP_958193.1 KEGG: hch:HCH_01854 hypothetical protein YP_958194.1 PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; KEGG: hch:HCH_01853 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB YP_958195.1 KEGG: hch:HCH_01855 predicted membrane protein YP_958196.1 PFAM: flavodoxin/nitric oxide synthase; KEGG: psb:Psyr_3703 flavodoxin/nitric oxide synthase YP_958197.1 TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: noc:Noc_0186 arsenate reductase YP_958198.1 PFAM: Redoxin domain protein; KEGG: ppu:PP_1646 thioredoxin, putative YP_958199.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase YP_958200.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein YP_958201.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: hch:HCH_01863 predicted ATPase of the PP-loop superfamily implicated in cell cycle control YP_958202.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_958203.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_958204.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_958205.1 PFAM: Septum formation initiator; KEGG: hch:HCH_01868 septum formation initiator YP_958206.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers YP_958207.1 KEGG: pau:PA14_17420 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase YP_958208.1 PFAM: tRNA pseudouridine synthase D, TruD; KEGG: sde:Sde_1249 pseudouridylate synthase YP_958209.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_958210.1 KEGG: sde:Sde_1250 protein-L-isoaspartate(D-aspartate) O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_958211.1 PFAM: protein of unknown function DUF368; KEGG: vch:VCA0040 hypothetical protein YP_958212.1 PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: hch:HCH_01876 membrane protein related to metalloendopeptidase YP_958213.1 TIGRFAM: RNA polymerase sigma factor RpoS; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: hch:HCH_01877 nonessential primary sigma factor YP_958214.1 KEGG: hch:HCH_01878 hypothetical protein YP_958215.1 KEGG: hch:HCH_01887 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop YP_958216.1 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase YP_958217.1 TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; KEGG: hch:HCH_01889 predicted NADH:ubiquinone oxidoreductase, subunit RnfG YP_958218.1 TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; KEGG: hch:HCH_01891 predicted NADH:ubiquinone oxidoreductase, subunit RnfD YP_958219.1 TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: hch:HCH_01892 predicted NADH:ubiquinone oxidoreductase, subunit RnfC YP_958220.1 TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: hch:HCH_01893 predicted NADH:ubiquinone oxidoreductase, subunit RnfB YP_958221.1 TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: hch:HCH_01895 predicted NADH:ubiquinone oxidoreductase, subunit RnfA YP_958222.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_958223.1 PFAM: protein of unknown function DUF59; KEGG: hch:HCH_01899 ATPase involved in chromosome partitioning YP_958224.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis YP_958225.1 KEGG: hch:HCH_01902 hypothetical protein YP_958226.1 transaminase C; catalyzes transamination of alanine, valine, and 2-aminobutyrate with their respective 2-keto acids; also catalyzes terminal step in valine biosynthesis YP_958227.1 KEGG: hch:HCH_01904 hypothetical protein YP_958228.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: ppu:PP_1664 phosphoribosylglycinamide formyltransferase YP_958229.1 KEGG: hch:HCH_01906 phosphoribosylaminoimidazole (AIR) synthetase; TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein YP_958230.1 KEGG: hch:HCH_01907 hypothetical protein YP_958231.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: hch:HCH_01908 phosphatidylglycerophosphate synthase YP_958232.1 PFAM: Chromosomal replication initiator, DnaA; KEGG: pfo:Pfl_1636 DnaA family protein YP_958233.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: hch:HCH_01910 ParA family protein YP_958234.1 PFAM: protein of unknown function DUF446; KEGG: pau:PA14_62180 hypothetical protein YP_958235.1 KEGG: pfl:PFL_0851 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase YP_958236.1 PFAM: protein of unknown function DUF1631; KEGG: pau:PA14_58690 hypothetical protein YP_958237.1 PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: pfl:PFL_0853 N-acetyl-anhydromuramyl-L-alanine amidase AmpD YP_958238.1 KEGG: hch:HCH_01922 membrane protein required for beta-lactamase induction YP_958239.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: hch:HCH_01925 methyl-accepting chemotaxis protein YP_958240.1 TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: hch:HCH_01926 hypothetical protein YP_958241.1 KEGG: hch:HCH_01927 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE, N-terminal domain protein; Ketopantoate reductase ApbA/PanE, C-terminal domain protein YP_958242.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_958243.1 PFAM: DNA polymerase III chi subunit, HolC; KEGG: hch:HCH_01930 DNA polymerase III, chi subunit YP_958244.1 PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: hch:HCH_01931 leucyl aminopeptidase YP_958245.1 PFAM: permease YjgP/YjgQ family protein; KEGG: hch:HCH_01933 predicted permease YP_958246.1 PFAM: permease YjgP/YjgQ family protein; KEGG: hch:HCH_01934 predicted permease YP_958247.1 PFAM: RDD domain containing protein; KEGG: pfo:Pfl_4396 RDD YP_958248.1 KEGG: hch:HCH_05209 alanyl-tRNA synthetase; TIGRFAM: alanyl-tRNA synthetase; PFAM: alanyl-tRNA synthetase, class IIc; phosphoesterase, DHHA1; Threonyl/alanyl tRNA synthetase, SAD YP_958249.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation. YP_958250.1 PFAM: carbon storage regulator; KEGG: sdn:Sden_1214 carbon storage regulator YP_958251.1 KEGG: hch:HCH_01554 hypothetical protein YP_958252.1 PFAM: helicase domain protein; DbpA, RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: pae:PA0455 RNA helicase DbpA YP_958253.1 TIGRFAM: sodium pump decarboxylases, gamma subunit; PFAM: sodium pump decarboxylase, gamma subunit; KEGG: hch:HCH_05203 putative oxaloacetate decarboxylase gamma chain YP_958254.1 catalyzes the formation of pyruvate from oxaloacetate YP_958255.1 KEGG: hch:HCH_05201 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit YP_958256.1 KEGG: mca:MCA2164 DNA polymerase III, alpha subunit, putative; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: phosphoesterase PHP domain protein YP_958257.1 KEGG: vvy:VV1295 hypothetical protein YP_958258.1 KEGG: aeh:Mlg_1095 hypothetical protein YP_958259.1 PFAM: transcriptional coactivator/pterin dehydratase; KEGG: csa:Csal_1321 transcriptional coactivator/pterin dehydratase YP_958260.1 TIGRFAM: integron integrase; PFAM: phage integrase family protein; KEGG: dar:Daro_3427 integron integrase YP_958261.1 PFAM: phage integrase family protein; KEGG: son:SO2528 site-specific recombinase, phage integrase family YP_958262.1 PFAM: putative transposase; KEGG: son:SO2212 transposase, IS91 family, putative YP_958264.1 PFAM: transposase, IS4 family protein; KEGG: sth:STH2706 transposase YP_958265.1 PFAM: transposase, IS4 family protein; KEGG: pol:Bpro_5331 transposase, IS4 YP_958267.1 PFAM: transposase, IS4 family protein; KEGG: pca:Pcar_0534 transposase IS4 family YP_958268.1 KEGG: ngo:NGO1387 hypothetical protein YP_958269.1 PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; SMART: AAA ATPase; KEGG: hch:HCH_06235 IstB helper protein, IS21 family YP_958270.1 PFAM: Integrase, catalytic region; KEGG: hch:HCH_06236 transposase, IS21 family YP_958271.1 KEGG: hch:HCH_06237 protein containing OB-fold nucleic acid binding domain YP_958272.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ilo:IL2074 glyoxalase/dioxygenase superfamily protein YP_958273.1 KEGG: vvu:VV12436 hypothetical protein YP_958274.1 PFAM: transposase IS116/IS110/IS902 family protein; SMART: Helix-hairpin-helix DNA-binding, class 1; KEGG: dar:Daro_3434 transposase IS116/IS110/IS902 YP_958276.1 PFAM: transposase IS116/IS110/IS902 family protein; SMART: Helix-hairpin-helix DNA-binding, class 1; KEGG: dar:Daro_3434 transposase IS116/IS110/IS902 YP_958278.1 PFAM: Integrase, catalytic region; KEGG: eba:ebA2485 transposase YP_958279.1 PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; SMART: AAA ATPase; KEGG: hch:HCH_06235 IstB helper protein, IS21 family YP_958280.1 PFAM: transposase IS3/IS911 family protein; KEGG: tcx:Tcr_1853 transposase IS3/IS911 YP_958281.1 PFAM: Integrase, catalytic region; KEGG: sfx:S0235 IS911 orfA YP_958282.1 KEGG: sde:Sde_3066 transglutaminase-like YP_958283.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bha:BH1868 hypothetical protein YP_958284.1 KEGG: hch:HCH_00932 hypothetical protein YP_958285.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: mmr:Mmar10_2206 transcriptional regulator, AraC family YP_958286.1 PFAM: NmrA family protein; KEGG: bur:Bcep18194_C6882 NmrA-like YP_958287.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sru:SRU_2488 response regulator DrrA YP_958288.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: bxe:Bxe_B0814 periplasmic sensor signal transduction histidine kinase YP_958289.1 KEGG: pcr:Pcryo_1427 peptide methionine sulfoxide reductase; TIGRFAM: peptide methionine sulfoxide reductase; methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; Methionine sulfoxide reductase B YP_958290.1 KEGG: mfa:Mfla_0088 hypothetical protein YP_958291.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: tbd:Tbd_1581 secretion protein HlyD YP_958292.1 PFAM: protein of unknown function DUF214; KEGG: aeh:Mlg_1574 protein of unknown function DUF214 YP_958293.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tbd:Tbd_1583 ABC transporter ATPase YP_958294.1 KEGG: abo:ABO_2425 glutathione S-transferase YP_958295.1 PFAM: UspA domain protein; KEGG: aeh:Mlg_1516 UspA domain protein YP_958296.1 KEGG: noc:Noc_0272 peptidase M41, FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase YP_958297.1 KEGG: hch:HCH_01843 hypothetical protein YP_958298.1 KEGG: csa:Csal_2329 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase YP_958299.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine YP_958300.1 TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal repeat, beta-propeller; KEGG: hch:HCH_04983 DNA gyrase, A subunit YP_958301.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine YP_958302.1 TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: csa:Csal_2166 chorismate mutase YP_958303.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_958304.1 KEGG: hch:HCH_04980 3-phosphoshikimate 1-carboxyvinyltransferase; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); Prephenate dehydrogenase; 6-phosphogluconate dehydrogenase, NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein YP_958305.1 KEGG: hch:HCH_04979 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region YP_958306.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_958307.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control YP_958308.1 KEGG: csa:Csal_2153 hypothetical protein YP_958309.1 KEGG: cbu:CBU_0530 TPR domain protein YP_958310.1 KEGG: vvu:VV12977 orotidine-5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase YP_958311.1 PFAM: aminotransferase, class I and II; KEGG: hch:HCH_04972 aspartate/tyrosine/aromatic aminotransferase YP_958312.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_958313.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: hch:HCH_02609 acetyltransferase YP_958314.1 PFAM: RimK domain protein ATP-grasp; KEGG: hch:HCH_02610 glutathione synthase/ribosomal protein S6 modification enzyme (glutaminyl transferase) YP_958315.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: hch:HCH_04967 predicted Co/Zn/Cd cation transporters YP_958316.1 PFAM: dihydroorotate dehydrogenase; KEGG: pau:PA14_24640 dihydroorotate dehydrogenase YP_958317.1 PFAM: ribosome modulation factor; KEGG: hch:HCH_10018 ribosome modulation factor YP_958318.1 catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA YP_958319.1 KEGG: hch:HCH_04963 hypothetical protein YP_958320.1 KEGG: hch:HCH_04960 hypothetical protein YP_958321.1 catalyzes the removal of amino acids from the N termini of peptides YP_958322.1 KEGG: dde:Dde_1531 hypothetical protein YP_958323.1 PFAM: lipolytic enzyme, G-D-S-L family; KEGG: pfo:Pfl_4014 lipolytic enzyme, G-D-S-L YP_958324.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfl:PFL_4279 ABC transporter, ATP-binding protein YP_958325.1 PFAM: protein of unknown function DUF214; KEGG: hch:HCH_04951 predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component YP_958326.1 SMART: extracellular solute-binding protein, family 3; KEGG: hch:HCH_05423 ABC-type amino acid transport/signal transduction system, periplasmic component/domain YP_958327.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: hch:HCH_05054 alcohol dehydrogenase, class IV YP_958328.1 KEGG: hch:HCH_05055 hypothetical protein YP_958329.1 PFAM: TPR repeat-containing protein; peptidase M48, Ste24p; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: hch:HCH_04948 putative Zn-dependent protease YP_958330.1 PFAM: protein of unknown function DUF599; KEGG: hch:HCH_04947 predicted membrane protein YP_958331.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: hch:HCH_04946 uncharacterized protein, possibly involved in aromatic compounds catabolism YP_958332.1 PFAM: thioesterase superfamily protein; KEGG: hch:HCH_04945 uncharacterized protein, possibly involved in aromatic compounds catabolism YP_958333.1 molecular chaperone YP_958334.1 KEGG: hch:HCH_04776 hypothetical protein YP_958335.1 KEGG: csa:Csal_0159 catalase/peroxidase HPI; TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase YP_958336.1 PFAM: dihydrouridine synthase, DuS; KEGG: pst:PSPTO_2169 dihydrouridine synthase family protein YP_958337.1 PFAM: fructose-bisphosphate aldolase, class-I; KEGG: net:Neut_1996 fructose-bisphosphate aldolase YP_958338.1 KEGG: ade:Adeh_2305 dehydrogenase-like YP_958339.1 PFAM: GCN5-related N-acetyltransferase; KEGG: syn:sll1671 putative acetyltransferase YP_958340.1 PFAM: small multidrug resistance protein; KEGG: bpe:BP2476 putative mebrane transport protein YP_958341.1 TIGRFAM: aspartate racemase; PFAM: Asp/Glu racemase; KEGG: xcv:XCV1832 putative aspartate racemase YP_958343.1 KEGG: abo:ABO_0062 hypothetical protein YP_958344.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: sde:Sde_2773 hypothetical protein YP_958345.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sde:Sde_2774 LysR family transcriptional regulator YP_958346.1 PFAM: nitroreductase; KEGG: sde:Sde_2776 ricin B lectin YP_958347.1 PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: ter:Tery_2853 TPR repeat YP_958348.1 KEGG: pat:Patl_2622 transcriptional regulator, AraC family YP_958349.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: pat:Patl_2623 alkylhydroperoxidase like protein, AhpD family YP_958351.1 KEGG: sde:Sde_3924 hypothetical protein YP_958352.1 KEGG: hch:HCH_00993 hypothetical protein YP_958353.1 KEGG: dde:Dde_0843 glycosyltransferase involved in cell wall biogenesis-like YP_958354.1 PFAM: Integrase, catalytic region; KEGG: hch:HCH_06236 transposase, IS21 family YP_958355.1 PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; SMART: AAA ATPase; KEGG: hch:HCH_06235 IstB helper protein, IS21 family YP_958356.1 KEGG: hch:HCH_04688 glycosyltransferase involved in cell wall biogenesis YP_958357.1 PFAM: DinB family protein; KEGG: bbr:BB1389 hypothetical protein YP_958359.1 PFAM: beta-lactamase; KEGG: hch:HCH_02299 beta-lactamase class A YP_958360.1 KEGG: sde:Sde_3066 transglutaminase-like YP_958361.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cps:CPS_3114 acetyltransferase, GNAT family YP_958363.1 KEGG: hch:HCH_04896 ribonucleotide reductase, alpha subunit YP_958364.1 KEGG: hch:HCH_04895 ribonucleotide reductase, alpha subunit; TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: ribonucleotide reductase large subunit YP_958366.1 PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: pau:PA14_14370 putative ABC-transporter ATP-binding component YP_958367.1 PFAM: inner-membrane translocator; KEGG: rru:Rru_A2105 inner-membrane translocator YP_958368.1 PFAM: protein of unknown function DUF534; KEGG: hch:HCH_04501 ABC-type uncharacterized transport system, periplasmic component YP_958369.1 PFAM: AMP-dependent synthetase and ligase; KEGG: hch:HCH_04499 long-chain acyl-CoA synthetases (AMP-forming) YP_958370.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_04498 ABC-type Fe3+ transport system, permease component YP_958371.1 PFAM: extracellular solute-binding protein, family 1; KEGG: hch:HCH_04497 ABC-type Fe3+ transport system, periplasmic component YP_958372.1 PFAM: type IV pilus assembly PilZ; KEGG: sde:Sde_0313 HAD-superfamily subfamily IB, PSPase-like YP_958373.1 KEGG: hch:HCH_04494 hypothetical protein YP_958374.1 KEGG: hch:HCH_04493 HD-GYP domain YP_958375.1 KEGG: hch:HCH_04492 ABC-type transport system involved in resistance to organic solvents, permease component YP_958376.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hch:HCH_04491 ABC-type multidrug transport system, ATPase component YP_958377.1 PFAM: ABC-2 type transporter; KEGG: abo:ABO_0879 ABC transporter permease component YP_958378.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis YP_958379.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; MASE2 domain protein; KEGG: hch:HCH_04487 adenylate cyclase, family 3 YP_958380.1 PFAM: nitroreductase; KEGG: pau:PA14_22710 putative nitroreductase family protein YP_958381.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella YP_958382.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod YP_958383.1 PFAM: flagellar hook capping protein; KEGG: hch:HCH_04480 flagellar hook capping protein YP_958384.1 PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: hch:HCH_04479 flagellar hook protein FlgE YP_958385.1 FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod YP_958386.1 makes up the distal portion of the flagellar basal body rod YP_958387.1 PFAM: flagellar L-ring protein; KEGG: hch:HCH_04476 flagellar basal body L-ring protein YP_958388.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum YP_958389.1 KEGG: hch:HCH_04474 muramidase (flagellum-specific); TIGRFAM: flagellar rod assembly protein/muramidase FlgJ; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2 YP_958390.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: hch:HCH_04473 flagellar hook-associated protein YP_958391.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes. YP_958392.1 TIGRFAM: S-adenosylmethionine--tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; KEGG: pau:PA14_14590 S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_958393.1 KEGG: psp:PSPPH_1300 queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylases, various specificities; queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase YP_958394.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: hch:HCH_04468 preprotein translocase, YajC subunit YP_958395.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_958396.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_958397.1 PFAM: inositol monophosphatase; KEGG: hch:HCH_04465 archaeal fructose-1,6-bisphosphatase and related enzyme of inositol monophosphatase family YP_958398.1 TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: hch:HCH_04464 rRNA methylase YP_958399.1 TIGRFAM: serine O-acetyltransferase; KEGG: hch:HCH_04463 serine O-acetyltransferase YP_958400.1 TIGRFAM: putative transcriptional regulator, Rrf2 family; iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; KEGG: sde:Sde_1412 rrf2 family protein YP_958401.1 PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pau:PA14_14730 cysteine desulfurase YP_958402.1 PFAM: nucleoside diphosphate kinase; KEGG: hch:HCH_04460 nucleoside diphosphate kinase YP_958403.1 TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: hch:HCH_04459 predicted Fe-S-cluster redox enzyme YP_958404.1 KEGG: pst:PSPTO_1432 type IV pilus biogenesis protein PilF; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein YP_958405.1 KEGG: hch:HCH_04457 hypothetical protein YP_958406.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_958407.1 KEGG: hch:HCH_04455 histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S); Anticodon-binding domain protein YP_958408.1 KEGG: hch:HCH_04454 hypothetical protein YP_958409.1 PFAM: Pyrrolo-quinoline quinone; KEGG: pae:PA3800 hypothetical protein YP_958410.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_958411.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate YP_958412.1 TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: cvi:CV1531 acetate kinase YP_958413.1 KEGG: hch:HCH_04449 predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_958414.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; domain of unknown function DUF1731; KEGG: mca:MCA0496 conserved hypothetical protein TIGR01777 YP_958415.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: hch:HCH_04767 hypothetical protein YP_958416.1 PFAM: protein of unknown function DUF924; KEGG: hch:HCH_04766 hypothetical protein YP_958417.1 PFAM: regulatory protein, TetR; KEGG: hch:HCH_04765 hypothetical protein YP_958418.1 PFAM: MOSC domain containing protein; MOSC domain protein beta barrel domain protein; KEGG: hch:HCH_04763 uncharacterized Fe-S protein YP_958419.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN3732 ABC transporter, ATP-binding protein YP_958420.1 KEGG: hch:HCH_04761 hypothetical protein YP_958421.1 PFAM: UspA domain protein; KEGG: csa:Csal_2397 UspA YP_958422.1 KEGG: hch:HCH_04758 hypothetical protein YP_958423.1 includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids YP_958424.1 FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids YP_958425.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity YP_958426.1 PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: bxe:Bxe_B0704 putative 3-hydroxyisobutyrate dehydrogenase YP_958427.1 KEGG: hch:HCH_04750 citrate synthase I; TIGRFAM: citrate synthase I; PFAM: Citrate synthase YP_958428.1 TIGRFAM: fumarate reductase, D subunit; PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: hch:HCH_04749 succinate dehydrogenase (C subunit) YP_958429.1 KEGG: hch:HCH_04748 succinate dehydrogenase, hydrophobic anchor subunit YP_958430.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_958431.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase YP_958432.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide YP_958433.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA YP_958434.1 E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_958435.1 KEGG: pae:PA1588 succinyl-CoA synthetase beta chain; TIGRFAM: succinyl-CoA synthetase, beta subunit; PFAM: ATP-citrate lyase/succinyl-CoA ligase; ATP-grasp domain protein YP_958436.1 TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: vvu:VV10154 succinyl-CoA synthetase alpha chain YP_958437.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_958438.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: hch:HCH_04738 hypothetical protein YP_958439.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: pfl:PFL_1600 segregation and condensation protein B YP_958440.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pfo:Pfl_1492 pseudouridine synthase, Rsu YP_958441.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pfl:PFL_4320 GGDEF domain protein YP_958442.1 PFAM: regulatory protein GntR, HTH; KEGG: hch:HCH_04733 transcriptional regulator YP_958443.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; KEGG: pen:PSEEN1767 chromosome segregation SMC protein YP_958444.1 TIGRFAM: cell division protein ZipA; PFAM: ZipA, C-terminal FtsZ-binding region; KEGG: hch:HCH_04730 cell division protein ZipA YP_958445.1 KEGG: hch:HCH_04729 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation; SMART: Helix-hairpin-helix DNA-binding, class 1; NAD-dependent DNA ligase-like YP_958446.1 KEGG: hch:HCH_04728 hypothetical protein YP_958447.1 PFAM: CBS domain containing protein; KEGG: net:Neut_0994 putative signal transduction protein with CBS domains YP_958448.1 PFAM: FAD dependent oxidoreductase; protein of unknown function DUF752; KEGG: cvi:CV1942 hypothetical protein YP_958449.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: pau:PA14_22450 peptidyl-prolyl cis-trans isomerase A YP_958450.1 KEGG: hch:HCH_04723 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB YP_958451.1 PFAM: FlgN family protein; KEGG: hch:HCH_04722 putative flagella synthesis protein FlgN YP_958452.1 PFAM: Anti-sigma-28 factor, FlgM family protein; KEGG: pfo:Pfl_4255 anti-sigma-28 factor, FlgM YP_958453.1 PFAM: SAF domain; KEGG: ppu:PP_4394 flagella basal body P-ring formation protein FlgA YP_958454.1 PFAM: response regulator receiver; CheW domain protein; KEGG: hch:HCH_04719 chemotaxis signal transduction protein YP_958455.1 PFAM: MCP methyltransferase, CheR-type; KEGG: pst:PSPTO_1928 chemotaxis protein methyltransferase CheR YP_958456.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: hch:HCH_01700 transcriptional regulator YP_958457.1 KEGG: hch:HCH_03078 hypothetical protein YP_958458.1 KEGG: ilo:IL0065 predicted transcription negative regulator YP_958459.1 PFAM: isochorismatase hydrolase; KEGG: bam:Bamb_1889 isochorismatase hydrolase YP_958460.1 PFAM: Auxin Efflux Carrier; KEGG: csa:Csal_2471 auxin efflux carrier YP_958461.1 PFAM: acylphosphatase; KEGG: mca:MCA0713 acylphosphatase YP_958462.1 PFAM: cytochrome c, class I; KEGG: bur:Bcep18194_B0408 cytochrome c, class I YP_958463.1 PFAM: cytochrome c, class I; KEGG: pfl:PFL_3403 cytochrome c family protein YP_958464.1 KEGG: sil:SPO2906 hypothetical protein YP_958465.1 PFAM: branched-chain amino acid transport; KEGG: rfr:Rfer_2863 branched-chain amino acid transport YP_958466.1 PFAM: AzlC family protein; KEGG: mba:Mbar_A2616 hypothetical protein YP_958467.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: aeh:Mlg_1098 methyl-accepting chemotaxis sensory transducer YP_958469.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: hch:HCH_04041 response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain YP_958470.1 KEGG: pau:PA14_30660 excinuclease ABC subunit C; TIGRFAM: excinuclease ABC, C subunit; PFAM: Excinuclease ABC, C subunit domain protein; excinuclease ABC, C subunit domain protein; UvrB/UvrC protein; SMART: Helix-hairpin-helix DNA-binding, class 1 YP_958471.1 KEGG: hch:HCH_04043 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_958472.1 KEGG: pfl:PFL_0097 lipoprotein, putative YP_958473.1 PFAM: Mammalian cell entry related domain protein; KEGG: pfo:Pfl_0039 hypothetical protein YP_958474.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfl:PFL_0099 ABC transporter, ATP-binding protein YP_958475.1 PFAM: protein of unknown function DUF140; KEGG: pfl:PFL_0100 ABC transporter, permease protein, putative YP_958476.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mes:Meso_3261 ABC transporter, ATPase subunit, ThiQ subfamily YP_958477.1 TIGRFAM: thiamine ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfx:S0064 putative transport system permease protein YP_958478.1 TIGRFAM: ABC transporter, periplasmic binding protein, thiB subfamily; thiamine ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: vch:VC2539 thiamine transport system substrate-binding protein YP_958479.1 KEGG: pfo:Pfl_3377 hypothetical protein YP_958480.1 KEGG: pst:PSPTO_4057 site-specific recombinase, phage integrase family YP_958485.1 PFAM: peptidase S24, S26A and S26B; KEGG: abo:ABO_1583 LexA repressor YP_958486.1 KEGG: dvu:DVU2906 umuC protein YP_958487.1 PFAM: phage integrase family protein; KEGG: sfr:Sfri_3483 phage integrase family protein YP_958488.1 KEGG: sfr:Sfri_3482 hypothetical protein YP_958489.1 KEGG: sfr:Sfri_3481 phage integrase family protein YP_958490.1 PFAM: transposase, IS4 family protein; KEGG: sme:SMc03260 putative transposase for insertion sequence ISRM17 YP_958491.1 KEGG: sfr:Sfri_3481 phage integrase family protein YP_958492.1 KEGG: sfr:Sfri_3480 TetR family transcriptional regulator-like protein YP_958493.1 PFAM: chemotaxis sensory transducer; KEGG: sdn:Sden_3066 chemotaxis sensory transducer YP_958494.1 KEGG: nar:Saro_2284 beta-lactamase-like YP_958495.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: hch:HCH_02459 HD-GYP domain YP_958496.1 KEGG: mag:amb2066 nucleotidyltransferase/DNA polymerase involved in DNA repair YP_958497.1 PFAM: EAL domain protein; KEGG: pat:Patl_3437 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) YP_958498.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: csa:Csal_1091 alcohol dehydrogenase GroES-like protein YP_958499.1 PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pho:PH1886 L-isoaspartyl protein carboxyl methyltransferase YP_958500.1 KEGG: pfo:Pfl_3376 hypothetical protein YP_958501.1 PFAM: Integrase, catalytic region; KEGG: hch:HCH_06236 transposase, IS21 family YP_958502.1 PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; SMART: AAA ATPase; KEGG: hch:HCH_06235 IstB helper protein, IS21 family YP_958503.1 KEGG: mag:amb2207 hypothetical protein YP_958504.1 PFAM: microcompartments protein; KEGG: sfv:SFV_2506 hypothetical protein YP_958505.1 KEGG: spt:SPA0399 putative ethanolamine utilization protein YP_958506.1 PFAM: protein of unknown function DUF861, cupin_3; Ethanolamine utilisation EutQ family protein; KEGG: ecp:ECP_2472 ethanolamine utilization protein EutQ YP_958507.1 PFAM: cobalamin adenosyltransferase; KEGG: ecp:ECP_2471 ethanolamine utilization cobalamin adenosyltransferase YP_958508.1 in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta YP_958509.1 PFAM: microcompartments protein; KEGG: dps:DP3034 probable ethanolamine utilization protein (EutM) YP_958510.1 PFAM: microcompartments protein; KEGG: sbo:SBO_2472 detox protein YP_958511.1 PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: sbo:SBO_2471 detox protein YP_958512.1 PFAM: aldehyde dehydrogenase; KEGG: dps:DP3039 probable ethanolamine utilization protein (EutE) YP_958513.1 TIGRFAM: ethanolamine utilization protein EutJ family protein; KEGG: dps:DP3038 probable ethanolamine utilization protein (EutJ) YP_958514.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: eci:UTI89_C2777 ethanolamine utilization protein EutG iron-containing alcohol dehydrogenase YP_958515.1 PFAM: Ethanolamine utilisation protein, EutH; KEGG: ecp:ECP_2464 ethanolamine utilization protein EutH YP_958516.1 ethanolamine utilization protein EutA YP_958517.1 PFAM: Ethanolamine ammonia lyase large subunit; KEGG: stm:STM2458 ethanolamine ammonia-lyase, heavy chain YP_958518.1 catalyzes the formation of acetaldehyde from ethanolamine YP_958519.1 PFAM: microcompartments protein; KEGG: ctc:CTC02174 ethanolamine utilization protein eutL YP_958520.1 PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: sus:Acid_0709 respiratory-chain NADH dehydrogenase domain, 51 kDa subunit YP_958521.1 PFAM: microcompartments protein; KEGG: sus:Acid_0708 microcompartments protein YP_958522.1 KEGG: hch:HCH_04912 quinolinate synthetase complex, A subunit YP_958523.1 PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: ilo:IL2420 EXOIII family exonuclease YP_958525.1 KEGG: bca:BCE_A0177 hypothetical protein YP_958526.1 KEGG: bca:BCE_A0178 hypothetical protein YP_958527.1 PFAM: regulatory protein, TetR; KEGG: eba:ebA6247 transcriptional regulator, TetR family YP_958528.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: eba:ebA6248 hypothetical protein YP_958529.1 PFAM: protein of unknown function DUF214; KEGG: tbd:Tbd_1360 ABC transporter permease protein YP_958530.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tbd:Tbd_1359 ABC transporter ATPase YP_958531.1 KEGG: rme:Rmet_1260 hypothetical protein YP_958532.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: tbd:Tbd_1356 RND efflux system outer membrane lipoprotein NodT YP_958533.1 PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: sfr:Sfri_3464 resolvase, N-terminal domain protein YP_958534.1 PFAM: transposase Tn3 family protein; KEGG: net:Neut_2562 transposase Tn3 family protein YP_958535.1 PFAM: phage integrase family protein; KEGG: stm:PSLT031 resolvase YP_958536.1 KEGG: sag:SAG0550 hypothetical protein YP_958537.1 KEGG: hch:HCH_05024 hypothetical protein YP_958538.1 KEGG: rme:Rmet_3041 hypothetical protein YP_958539.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: xac:XAC3952 hypothetical protein YP_958540.1 SMART: TIR protein; KEGG: rha:RHA1_ro09117 hypothetical protein YP_958542.1 KEGG: bte:BTH_I3133 hypothetical protein YP_958546.1 PFAM: leucine-rich repeat protein; KEGG: lil:LA1530 leucine rich repeat protein YP_958547.1 PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: net:Neut_0054 cytochrome c biogenesis protein, transmembrane region YP_958548.1 KEGG: hch:HCH_03039 hypothetical protein YP_958549.1 PFAM: cytochrome c, class I; KEGG: rsp:RSP_3264 probable C-type cytochrome YP_958550.1 KEGG: sus:Acid_5189 hypothetical protein YP_958551.1 PFAM: protein of unknown function DUF411; KEGG: aeh:Mlg_2643 protein of unknown function DUF411 YP_958554.1 KEGG: neu:NE0835 transposase Tn3 family YP_958555.1 KEGG: ana:all8090 phosphonate transport system ATP-binding protein; TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_958556.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: ana:all8089 putative phosphonate transport system substrate-binding protein YP_958557.1 TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ana:all8088 phosphonate transport system permease protein YP_958558.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: ana:all8087 glycerate dehydrogenase YP_958559.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: ana:all8086 transcriptional regulator YP_958560.1 KEGG: gsu:GSU3151 hypothetical protein YP_958561.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: sde:Sde_2491 quinolinate synthetase A YP_958562.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: bmb:BruAb2_0223 sensor histidine kinase YP_958563.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bte:BTH_II0903 DNA-binding response regulator YP_958564.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; FAD-binding 8 domain protein; Ferric reductase domain protein transmembrane component, N-terminal domain; KEGG: eba:ebA3186 hypothetical protein YP_958565.1 KEGG: eba:ebA3195 hypothetical protein YP_958566.1 KEGG: eba:ebA3194 hypothetical protein YP_958567.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; PepSY-associated TM helix domain protein; flavodoxin/nitric oxide synthase; Oxidoreductase FAD-binding domain protein; KEGG: eba:ebA3193 putative oxidoreductase, FAD-binding YP_958568.1 PFAM: protein of unknown function DUF125, transmembrane; KEGG: csa:Csal_2162 protein of unknown function DUF125, transmembrane YP_958569.1 KEGG: sdn:Sden_0608 hypothetical protein YP_958570.1 KEGG: bxe:Bxe_C0883 heavy metal/H+ antiporter, CDF family YP_958571.1 KEGG: ilo:IL1216 uncharacterized conserved secreted protein with internal repeats YP_958572.1 PFAM: Integrase, catalytic region; KEGG: aeh:Mlg_2334 integrase, catalytic region YP_958573.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: aeh:Mlg_1531 IstB domain protein ATP-binding protein YP_958574.1 PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; SMART: AAA ATPase; KEGG: hch:HCH_06235 IstB helper protein, IS21 family YP_958575.1 PFAM: Integrase, catalytic region; KEGG: hch:HCH_06236 transposase, IS21 family YP_958576.1 KEGG: ppr:PBPRA1708 hypothetical protein YP_958577.1 KEGG: csa:Csal_3241 hypothetical protein YP_958578.1 PFAM: protein of unknown function DUF159; KEGG: aba:Acid345_3891 protein of unknown function DUF159 YP_958580.1 KEGG: aeh:Mlg_1474 transcriptional regulator-like protein YP_958581.1 KEGG: eba:p1B331 hypothetical protein YP_958583.1 PFAM: 5-nucleotidase; KEGG: ppu:PP_2531 5-nucleotidase, putative YP_958587.1 PFAM: metallophosphoesterase; KEGG: hch:HCH_04712 diadenosine tetraphosphatase and related serine/threonine protein phosphatase YP_958588.1 PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like; KEGG: deh:cbdb_A108 putative helicase (SNF2 family) YP_958590.1 PFAM: SNF2-related protein; helicase domain protein; type III restriction enzyme, res subunit; SMART: DEAD-like helicases-like; KEGG: ecs:ECs5261 putative ATP-dependent helicase YP_958591.1 KEGG: ecs:ECs5262 hypothetical protein YP_958592.1 PFAM: protein of unknown function DUF262; protein of unknown function DUF1524 RloF; KEGG: eba:p2A52 hypothetical protein YP_958595.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: ecs:ECs5263 putative RNA helicase YP_958596.1 KEGG: hch:HCH_05710 superfamily I DNA and RNA helicase YP_958597.1 KEGG: dps:DP1718 hypothetical protein YP_958598.1 KEGG: sma:SAV1859 ADP-ribosylglycohydrolase YP_958599.1 KEGG: sfr:Sfri_0452 UvrD/REP helicase YP_958600.1 KEGG: tbd:Tbd_0938 hypothetical protein YP_958602.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: gvi:gll4066 putative transposase YP_958603.1 PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; KEGG: sth:STH2702 transposase subunit YP_958604.1 PFAM: Integrase, catalytic region; KEGG: sfr:Sfri_3414 integrase, catalytic region YP_958605.1 KEGG: rpc:RPC_4491 IstB-like ATP-binding protein YP_958606.1 PFAM: Integrase, catalytic region; KEGG: ecc:c5144 hypothetical protein YP_958607.1 PFAM: metallophosphoesterase; KEGG: cps:CPS_1287 Ser/Thr protein phosphatase family protein YP_958608.1 KEGG: mag:amb3617 hypothetical protein YddU; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein YP_958609.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: tbd:Tbd_1059 rRNA (guanine-N1-)-methyltransferase, putative YP_958610.1 KEGG: csa:Csal_2117 hypothetical protein YP_958611.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: pat:Patl_1543 cold-shock DNA-binding domain protein YP_958612.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport YP_958613.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pau:PA14_56770 putative permease YP_958614.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: wsu:WS1419 periplasmic component of efflux system YP_958615.1 PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: eba:ebA1848 transmembrane ATP-binding ABC transporter protein YP_958616.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: eba:ebA1847 probable outer membrane protein YP_958617.1 KEGG: eba:ebA6078 hypothetical protein YP_958618.1 KEGG: eba:ebB215 hypothetical protein YP_958619.1 PFAM: carbohydrate kinase, FGGY; KEGG: hch:HCH_04623 sugar (pentulose and hexulose) kinase YP_958620.1 PFAM: FAD dependent oxidoreductase; KEGG: hch:HCH_04624 glycerol-3-phosphate dehydrogenase YP_958621.1 PFAM: FAD linked oxidase domain protein; KEGG: hch:HCH_04625 FAD/FMN-containing dehydrogenase YP_958622.1 KEGG: hch:HCH_03939 predicted periplasmic protein YP_958623.1 KEGG: hch:HCH_03938 hypothetical protein YP_958624.1 KEGG: hch:HCH_03937 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase YP_958625.1 TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: hch:HCH_03936 general secretion pathway protein F YP_958626.1 TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: pae:PA3101 general secretion pathway protein G YP_958627.1 TIGRFAM: general secretion pathway protein H; KEGG: hch:HCH_03933 general secretion pathway protein H YP_958628.1 TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; KEGG: pau:PA14_24050 general secretion pathway protein I YP_958629.1 TIGRFAM: general secretion pathway protein J; KEGG: pau:PA14_24060 general secretion pathway protein J YP_958630.1 PFAM: General secretion pathway protein K; KEGG: hch:HCH_03930 type II secretory pathway, component PulK YP_958631.1 TIGRFAM: general secretion pathway protein L; PFAM: General secretion pathway L; KEGG: hch:HCH_03929 type II secretory pathway, component PulL YP_958632.1 PFAM: General secretion pathway M protein; KEGG: hch:HCH_03928 type II secretory pathway, component PulM YP_958633.1 PFAM: GCN5-related N-acetyltransferase; KEGG: hch:HCH_03926 histone acetyltransferase HPA2/related acetyltransferase YP_958634.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: pfl:PFL_3398 glutathione reductase YP_958635.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: hch:HCH_03924 signal transduction histidine kinase YP_958636.1 KEGG: dar:Daro_0134 hypothetical protein YP_958637.1 PFAM: TonB-dependent receptor, plug; KEGG: hch:HCH_03922 outer membrane receptor protein, mostly Fe transport YP_958638.1 KEGG: hch:HCH_05543 protein containing DnaJ domain YP_958639.1 KEGG: xcb:XC_3894 hypothetical protein YP_958640.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pau:PA14_43480 putative transcriptional regulator, GntR family YP_958641.1 KEGG: bam:Bamb_5336 alpha/beta hydrolase fold-3 domain protein YP_958642.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cvi:CV3222 probable transcriptional regulator, LysR family YP_958643.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: vch:VC1581 NADH dehydrogenase, putative YP_958644.1 KEGG: tcx:Tcr_0854 hypothetical protein YP_958645.1 KEGG: son:SO3602 sulfate ABC transporter, ATP-binding protein; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_958646.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shm:Shewmr7_3094 sulfate ABC transporter, inner membrane subunit CysW YP_958647.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: she:Shewmr4_3013 sulfate ABC transporter, inner membrane subunit CysT YP_958648.1 TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: she:Shewmr4_3012 sulfate ABC transporter, periplasmic sulfate-binding protein YP_958649.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_958650.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ilo:IL1440 Zn-dependent alcohol dehydrogenase YP_958651.1 KEGG: hch:HCH_06015 hypothetical protein YP_958652.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: sma:SAV4404 hypothetical protein YP_958653.1 PFAM: protein of unknown function DUF182; KEGG: pau:PA14_61120 putative xanthine dehydrogenase accessory factor X YP_958654.1 PFAM: protein kinase; SMART: serine/threonine protein kinase; KEGG: hch:HCH_03684 serine/threonine protein kinase YP_958655.1 PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: hch:HCH_03685 2-oxoglutarate dehydrogenase E2 YP_958656.1 PFAM: Transketolase, central region; Transketolase domain protein; KEGG: hch:HCH_03686 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit YP_958657.1 PFAM: dehydrogenase, E1 component; KEGG: hch:HCH_03687 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit YP_958658.1 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate YP_958659.1 KEGG: pol:Bpro_3366 putative protein-S-isoprenylcysteine methyltransferase-like YP_958661.1 KEGG: pol:Bpro_5212 hypothetical protein YP_958662.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: son:SO4299 chloramphenicol acetyltransferase YP_958663.1 KEGG: net:Neut_0054 cytochrome c biogenesis protein, transmembrane region YP_958664.1 KEGG: hch:HCH_03039 hypothetical protein YP_958665.1 PFAM: cytochrome c, class I; KEGG: rsp:RSP_3264 probable C-type cytochrome YP_958666.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: noc:Noc_2758 mercuric reductase MerA YP_958667.1 TIGRFAM: mercuric transport protein periplasmic component; PFAM: Heavy metal transport/detoxification protein; KEGG: net:Neut_2569 mercuric transport protein periplasmic component YP_958668.1 PFAM: Mercuric transport protein MerT; KEGG: rme:Rmet_2313 mercuric transport protein MerT YP_958669.1 TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: net:Neut_2571 transcriptional regulator, MerR family YP_958671.1 KEGG: pen:PSEEN1816 disulfide isomerase, thiol-disulphide oxidase, periplasmic YP_958672.1 PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: dvu:DVU0999 ThiO:disulfide interchange protein, putative YP_958674.1 PFAM: electron transport protein SCO1/SenC; Redoxin domain protein; KEGG: eba:ebA2886 predicted uncharacterized protein SCO1/SenC/PrrC,involved in biogenesis of respiratory and photosynthetic systems YP_958675.1 PFAM: Redoxin domain protein; KEGG: pol:Bpro_3502 hypothetical protein YP_958676.1 TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: bxe:Bxe_C0882 transcriptional regulator, MerR family YP_958677.1 TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: aeh:Mlg_0398 apolipoprotein N-acyltransferase YP_958678.1 KEGG: noc:Noc_2276 signal peptidase II; TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8, signal peptidase II YP_958679.1 PFAM: beta-lactamase domain protein; KEGG: tbd:Tbd_0043 hypothetical protein YP_958680.1 PFAM: Bile acid:sodium symporter; KEGG: msu:MS0879 predicted Na+-dependent transporter YP_958681.1 TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: bxe:Bxe_C0882 transcriptional regulator, MerR family YP_958682.1 KEGG: abo:ABO_1368 cation efflux system permease, putative YP_958683.1 KEGG: ilo:IL1241 lipoprotein signal peptidase; TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8, signal peptidase II YP_958684.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: psp:PSPPH_4906 antioxidant, AhpC/Tsa family YP_958685.1 TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: pae:PA1480 cytochrome C-type biogenesis protein CcmF YP_958686.1 TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: Redoxin domain protein; KEGG: psb:Psyr_3387 periplasmic protein thiol:disulfide oxidoreductase DsbE YP_958687.1 PFAM: cytochrome C biogenesis protein; KEGG: psb:Psyr_3386 cytochrome c biogenesis protein YP_958688.1 KEGG: psb:Psyr_3385 TPR repeat YP_958689.1 PFAM: prolipoprotein diacylglyceryl transferase; KEGG: csa:Csal_2573 prolipoprotein diacylglyceryl transferase YP_958690.1 PFAM: regulatory protein, MerR; KEGG: csa:Csal_3005 transcriptional regulator, MerR family YP_958691.1 PFAM: regulatory protein, TetR; KEGG: ana:alr1721 transcriptional regulator YP_958692.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sfr:Sfri_1435 efflux transporter, RND family, MFP subunit YP_958693.1 PFAM: acriflavin resistance protein; KEGG: sfr:Sfri_1436 acriflavin resistance protein YP_958694.1 PFAM: LysR, substrate-binding; KEGG: pha:PSHAa1236 transcriptional regulator YP_958696.1 PFAM: MltA-interacting MipA family protein; KEGG: rme:Rmet_5596 MltA-interacting MipA YP_958697.1 KEGG: tbd:Tbd_0610 conserved secreted protein with internal repeats YP_958698.1 PFAM: Citrate transporter; KEGG: hch:HCH_05779 Na+/H+ antiporter NhaD and related arsenite permease YP_958699.1 KEGG: abo:ABO_0443 hypothetical protein YP_958700.1 PFAM: cation transporter; KEGG: csa:Csal_2171 cation transporter YP_958701.1 KEGG: sat:SYN_02761 glycogen phosphorylase; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase, family 35 YP_958702.1 PFAM: short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; KR; KEGG: bur:Bcep18194_B1464 short-chain dehydrogenase/reductase SDR YP_958703.1 PFAM: type IV pilus assembly PilZ YP_958704.1 KEGG: aeh:Mlg_0961 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase, family 77 YP_958705.1 PFAM: glycoside hydrolase, family 57; KEGG: aeh:Mlg_0960 glycoside hydrolase, family 57 YP_958706.1 TIGRFAM: glucose-1-phosphate adenylyltransferase; PFAM: Nucleotidyl transferase; KEGG: noc:Noc_0905 glucose-1-phosphate adenylyltransferase YP_958707.1 KEGG: noc:Noc_0904 glycogen branching enzyme; TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; alpha amylase, C-terminal all-beta; SMART: alpha amylase, catalytic sub domain YP_958708.1 KEGG: mca:MCA1476 glycogen synthase; TIGRFAM: glycogen/starch synthases, ADP-glucose type; PFAM: glycosyl transferase, group 1; Starch synthase catalytic domain protein YP_958709.1 KEGG: aeh:Mlg_0956 alpha-glucan phosphorylase; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase, family 35 YP_958710.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: vpa:VPA0416 hypothetical protein YP_958711.1 KEGG: abo:ABO_0735 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like YP_958712.1 KEGG: pau:PA14_66450 hypothetical protein YP_958713.1 KEGG: cvi:CV1119 hypothetical protein YP_958714.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: csa:Csal_2710 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_958716.1 KEGG: hch:HCH_05157 hypothetical protein YP_958717.1 PFAM: glycosyl transferase, group 1; KEGG: tbd:Tbd_0614 glycosyltransferase YP_958718.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: abo:ABO_1721 phosphate ABC transporter periplasmic-binding protein YP_958719.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: csa:Csal_2744 ABC transporter related YP_958720.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: abo:ABO_1723 hypothetical protein YP_958722.1 KEGG: hch:HCH_04038 hypothetical protein YP_958724.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: abo:ABO_0297 ABC transporter, ATP-binding protein, putative YP_958725.1 PFAM: ABC-2 type transporter; KEGG: abo:ABO_0298 ATP-binding cassette (ABC) transporters, permease, putative YP_958726.1 PFAM: protein of unknown function DUF192; KEGG: csa:Csal_2673 protein of unknown function DUF192 YP_958727.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpa:RPA2316 enoyl-CoA hydratase YP_958728.1 KEGG: shm:Shewmr7_3642 putative outer membrane adhesin like protein YP_958729.1 PFAM: transposase, IS4 family protein; KEGG: bxe:Bxe_C0019 putative transposase YP_958732.1 KEGG: sus:Acid_1680 conserved hypothetical protein YP_958733.1 KEGG: lin:lin0833 hypothetical protein YP_958734.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: mmr:Mmar10_2552 methyltransferase type 11 YP_958735.1 PFAM: cytochrome bd ubiquinol oxidase, subunit I; KEGG: csa:Csal_2001 cytochrome bd ubiquinol oxidase, subunit I YP_958736.1 TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; KEGG: csa:Csal_2000 cytochrome d ubiquinol oxidase, subunit II YP_958737.1 KEGG: csa:Csal_1999 ABC transporter related; TIGRFAM: ABC transporter, transmembrane region, type 1; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase YP_958738.1 KEGG: csa:Csal_1998 ABC transporter related; TIGRFAM: ABC transporter, transmembrane region, type 1; PFAM: ABC transporter related; SMART: AAA ATPase YP_958739.1 PFAM: Saccharopine dehydrogenase; KEGG: bur:Bcep18194_C7476 putative saccharopine dehydrogenase YP_958742.1 PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: hch:HCH_03949 electron transfer flavoprotein, alpha subunit YP_958743.1 PFAM: electron transfer flavoprotein beta-subunit; KEGG: hch:HCH_03950 electron transfer flavoprotein, beta subunit YP_958744.1 PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: hch:HCH_03954 dehydrogenase YP_958745.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: hch:HCH_06609 FKBP-type peptidyl-prolyl cis-trans isomerases 2 YP_958746.1 PFAM: protein of unknown function DUF1285; KEGG: psp:PSPPH_1653 hypothetical protein YP_958747.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: ppr:PBPRB0038 hypothetical protein YP_958748.1 PFAM: Phosphoglycerate mutase; KEGG: pae:PA1616 phosphohistidine phosphatase YP_958749.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_958750.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: hch:HCH_02762 anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) YP_958751.1 PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: hch:HCH_02761 serine phosphatase RsbU, regulator of sigma subunit YP_958752.1 SMART: metal-dependent phosphohydrolase, HD region; KEGG: hch:HCH_02760 HD superfamily phosphohydrolase YP_958753.1 PFAM: FAD dependent oxidoreductase; KEGG: pfo:Pfl_4732 FAD dependent oxidoreductase YP_958754.1 PFAM: fatty acid desaturase; KEGG: xom:XOO_1815 delta 9 acyl-lipid fatty acid desaturase YP_958755.1 KEGG: dps:DP2146 hypothetical protein YP_958756.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Male sterility C-terminal domain; KR; KEGG: csa:Csal_0463 short-chain dehydrogenase/reductase SDR YP_958757.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: vfi:VFA0762 putative dehydrogenase YP_958758.1 PFAM: protein of unknown function DUF1365; KEGG: xcb:XC_2909 hypothetical protein YP_958759.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pfl:PFL_5152 cyclopropane-fatty-acyl-phospholipid synthase YP_958760.1 KEGG: pst:PSPTO_1115 hypothetical protein YP_958762.1 KEGG: pen:PSEEN2076 exonuclease III; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase YP_958763.1 PFAM: regulatory protein, TetR; KEGG: hch:HCH_02756 transcriptional regulator YP_958764.1 TIGRFAM: poly(hydroxyalkanoate) granule-associated protein; PFAM: poly granule associated family protein; KEGG: hch:HCH_02755 hypothetical protein YP_958765.1 PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: pol:Bpro_4846 protein of unknown function DUF395, YeeE/YedE YP_958766.1 PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: reu:Reut_A0232 YeeE/YedE YP_958767.1 PFAM: protein of unknown function DUF442; KEGG: abo:ABO_1944 hypothetical protein YP_958768.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic YP_958769.1 PFAM: LamB/YcsF family protein; KEGG: csa:Csal_1029 LamB/YcsF YP_958770.1 PFAM: Allophanate hydrolase subunit 1; KEGG: tko:TK0333 allophanate hydrolase, subunit 1 YP_958771.1 PFAM: Allophanate hydrolase subunit 2; KEGG: ilo:IL1479 allophanate hydrolase subunit 2 YP_958772.1 PFAM: phage integrase family protein; KEGG: aeh:Mlg_0637 phage integrase family protein YP_958775.1 KEGG: rso:RSc2483 hypothetical protein YP_958776.1 PFAM: protein of unknown function DUF927; KEGG: eba:ebA1345 hypothetical protein YP_958779.1 KEGG: pau:PA14_62170 hypothetical protein YP_958780.1 KEGG: pca:Pcar_1823 putative integrase prophage protein YP_958781.1 KEGG: dvu:DVU1527 site-specific recombinase, phage integrase family YP_958782.1 PFAM: Prophage CP4-57 regulatory; KEGG: vvy:VV0262 prophage regulatory protein YP_958783.1 KEGG: mmu:17886 myosin, heavy polypeptide 9, non-muscle YP_958784.1 KEGG: xcv:XCV2222 hypothetical protein YP_958786.1 TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: bcl:ABC1341 phage-related tail protein YP_958789.1 PFAM: protein of unknown function UPF0005; KEGG: pen:PSEEN2225 hypothetical protein YP_958790.1 PFAM: DsrE family protein; KEGG: hch:HCH_02548 uncharacterized conserved protein involved in intracellular sulfur reduction YP_958791.1 PFAM: DsrE family protein; KEGG: csa:Csal_1924 DsrE-like protein YP_958792.1 KEGG: vpa:VP2774 putative uncharacterized protein involved in oxidation of intracellular sulfur YP_958793.1 PFAM: DsrC family protein; KEGG: csa:Csal_1922 DsrC-like protein YP_958795.1 KEGG: abo:ABO_0977 hypothetical protein YP_958796.1 PFAM: HesB/YadR/YfhF-family protein; nitrogen-fixing NifU domain protein; KEGG: hch:HCH_02543 thioredoxin-like protein YP_958797.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity YP_958798.1 KEGG: ilo:IL2326 hypothetical protein YP_958799.1 PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: hch:HCH_02538 sulfite reductase, beta subunit (hemoprotein) YP_958800.1 PFAM: Uncharacterised conserved protein UCP030820; KEGG: hch:HCH_02537 hypothetical protein YP_958801.1 SohB; periplasmic protein; member of the peptidase S49 family YP_958802.1 PFAM: Sterol-binding domain protein; KEGG: hch:HCH_02532 putative sterol carrier protein YP_958803.1 KEGG: hch:HCH_02530 methyl-accepting chemotaxis protein YP_958804.1 KEGG: hch:HCH_02528 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease YP_958805.1 PFAM: ribonuclease H; KEGG: csa:Csal_1942 ribonuclease H YP_958806.1 PFAM: Methyltransferase type 11; KEGG: hch:HCH_02526 SAM-dependent methyltransferase YP_958807.1 PFAM: beta-lactamase domain protein; KEGG: pat:Patl_1895 hydroxyacylglutathione hydrolase YP_958808.1 PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase, catalytic; KEGG: hch:HCH_02524 soluble lytic murein transglycosylase and related regulatory protein (some contain LysM/invasin domains) YP_958809.1 PFAM: extracellular solute-binding protein, family 5; KEGG: aeh:Mlg_2274 extracellular solute-binding protein, family 5 YP_958810.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfl:PFL_3303 peptide ABC transporter, permease protein YP_958811.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pae:PA1808 putative peptide transport system permease protein YP_958812.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: psp:PSPPH_1704 ABC transporter, ATP-binding protein YP_958813.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: hch:HCH_02517 enoyl-[acyl-carrier-protein] reductase (NADH) YP_958814.1 PFAM: type IV pilus assembly PilZ YP_958815.1 KEGG: hch:HCH_02514 hypothetical protein YP_958816.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive YP_958817.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: hch:HCH_02450 uroporphyrinogen-III methylase YP_958818.1 KEGG: hch:HCH_02449 seryl-tRNA synthetase; TIGRFAM: seryl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S); seryl-tRNA synthetase, class IIa YP_958819.1 PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pae:PA2613 putative ATPase YP_958820.1 participates with LolB in the incorporation of lipoprotein into the outer membrane YP_958821.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: hch:HCH_02445 cell division protein FtsK YP_958822.1 KEGG: sde:Sde_2071 dihydrolipoamide dehydrogenase; TIGRFAM: O-succinylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase YP_958823.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_958824.1 PFAM: Colicin V production protein; KEGG: hch:HCH_02441 uncharacterized membrane protein, required for colicin V production YP_958825.1 PFAM: Sporulation domain protein; KEGG: hch:HCH_02440 probable DedD protein YP_958826.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: noc:Noc_1023 folylpolyglutamate synthetase YP_958827.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: pau:PA14_23860 acetyl-CoA carboxylase beta subunit YP_958828.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_958829.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_958830.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: pen:PSEEN1690 N-(5'-phosphoribosyl)anthranilate isomerase (PRAI) YP_958831.1 KEGG: hch:HCH_02434 tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase YP_958832.1 PFAM: Tetratricopeptide TPR_4; KEGG: hch:HCH_02433 protein containing tetratricopeptide repeats YP_958833.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde YP_958834.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_958835.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D YP_958836.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate YP_958837.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pfl:PFL_2062 transcriptional regulator, LysR family YP_958838.1 PFAM: nucleoside:H+ symporter; major facilitator superfamily MFS_1; KEGG: abo:ABO_1472 hypothetical protein YP_958839.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_958840.1 involved in methylation of ribosomal protein L3 YP_958841.1 PFAM: Patatin; KEGG: hch:HCH_02419 predicted esterase of the alpha-beta hydrolase superfamily YP_958842.1 KEGG: hch:HCH_02418 hypothetical protein YP_958843.1 PFAM: alpha/beta hydrolase fold; KEGG: hch:HCH_02417 predicted hydrolase or acyltransferase (alpha/beta hydrolase superfamily) YP_958844.1 PFAM: type IV pilus assembly PilZ; KEGG: hch:HCH_02415 Tfp pilus assembly protein PilZ YP_958845.1 KEGG: abo:ABO_1075 DNA polymerase III, delta prime subunit YP_958846.1 PFAM: transglutaminase domain protein; KEGG: hch:HCH_02669 transglutaminase-like enzyme, putative cysteine protease YP_958847.1 PFAM: protein of unknown function DUF58; KEGG: pae:PA2874 hypothetical protein YP_958848.1 KEGG: hch:HCH_02667 hypothetical protein YP_958849.1 KEGG: hch:HCH_02664 hypothetical protein YP_958851.1 TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I and chorismate binding protein; KEGG: pae:PA1758 para-aminobenzoate synthase component I YP_958852.1 catalyzes the formation of serine from phosphoserine; also has phosphoserine:homoserine phosphotransferase activity YP_958853.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite YP_958854.1 LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation YP_958855.1 PFAM: regulatory protein, LuxR; Tetratricopeptide TPR_4; Sigma-70, region 4 type 2; SMART: Tetratricopeptide domain protein; KEGG: hch:HCH_02655 ATP-dependent transcriptional regulator YP_958856.1 helicase involved in DNA repair and perhaps also replication YP_958857.1 KEGG: hch:HCH_02653 hypothetical protein YP_958858.1 PFAM: Peptidoglycan-binding domain 1 protein; SMART: AAA ATPase; KEGG: hch:HCH_02652 type II secretory pathway, component ExeA (predicted ATPase) YP_958859.1 PFAM: Patatin; KEGG: hch:HCH_02651 predicted esterase of the alpha-beta hydrolase superfamily YP_958860.1 PFAM: VacJ family lipoprotein; KEGG: hch:HCH_02650 surface lipoprotein YP_958861.1 PFAM: thioesterase superfamily protein; KEGG: bpm:BURPS1710b_1871 thioesterase family protein YP_958862.1 catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_958863.1 KEGG: hch:HCH_02648 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases-like YP_958864.1 activates fatty acids by binding to coenzyme A; involved in the #-oxidation of n-alkanoic and n-phenylalkanoic acids YP_958865.1 PFAM: MaoC domain protein dehydratase; KEGG: hch:HCH_02642 acyl dehydratase YP_958866.1 KEGG: hch:HCH_02634 hypothetical protein YP_958867.1 KEGG: hch:HCH_02633 biopolymer transport protein YP_958868.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: hch:HCH_02632 hypothetical protein YP_958869.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: hch:HCH_02631 biopolymer transport protein YP_958871.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: hch:HCH_02628 FOG: TPR repeat YP_958872.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: hch:HCH_02627 hypothetical protein YP_958873.1 KEGG: hch:HCH_02626 FOG: TPR repeat YP_958874.1 KEGG: sfr:Sfri_1231 helix-turn-helix, AraC type YP_958875.1 KEGG: hch:HCH_02624 hypothetical protein YP_958876.1 PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: hch:HCH_02623 MoxR-like ATPase YP_958877.1 PFAM: von Willebrand factor, type A; KEGG: hch:HCH_02620 uncharacterized protein containing a von Willebrand factor type A (vWA) domain YP_958879.1 PFAM: protein of unknown function UPF0153; KEGG: sde:Sde_1340 hypothetical protein YP_958880.1 PFAM: protein of unknown function DUF709; KEGG: hch:HCH_02617 hypothetical protein YP_958881.1 PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: pau:PA14_47460 ribonuclease D YP_958882.1 KEGG: csa:Csal_1460 recombination protein RecR; TIGRFAM: recombination protein RecR; PFAM: RecR protein; TOPRIM domain protein; SMART: Toprim sub domain protein YP_958883.1 PFAM: conserved hypothetical protein 103; KEGG: hch:HCH_02614 hypothetical protein YP_958884.1 KEGG: pfo:Pfl_1805 AAA ATPase, central region; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase YP_958885.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: tcx:Tcr_0041 2OG-Fe(II) oxygenase YP_958886.1 PFAM: Aldose 1-epimerase; KEGG: pae:PA5422 hypothetical protein YP_958887.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: hch:HCH_02752 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_958888.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; KEGG: hch:HCH_02751 nucleoside-diphosphate-sugar epimerase YP_958889.1 TIGRFAM: histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: hch:HCH_02749 signal transduction histidine kinase YP_958890.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: hch:HCH_02748 acetoacetate metabolism regulatory protein AtoC (sigma 54-dependent transcriptional regulator) YP_958891.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: hch:HCH_02747 FOG: TPR repeat YP_958892.1 PFAM: Fibronectin, type III domain protein; PA14 domain protein; SMART: PA14-related domain protein; KEGG: sde:Sde_1146 hypothetical protein YP_958893.1 PFAM: protein of unknown function DUF1555; KEGG: sde:Sde_1129 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) YP_958894.1 KEGG: xcb:XC_0771 hypothetical protein YP_958895.1 TIGRFAM: eight transmembrane protein EpsH; KEGG: hch:HCH_02741 hypothetical protein YP_958896.1 KEGG: cps:CPS_5003 hypothetical protein YP_958897.1 PFAM: glycosyl transferase, family 2; KEGG: pab:PAB0772 glycosyl transferase YP_958898.1 KEGG: pol:Bpro_5331 transposase, IS4 YP_958899.1 PFAM: Integrase, catalytic region; KEGG: eba:ebA2485 transposase YP_958900.1 PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; SMART: AAA ATPase; KEGG: bxe:Bxe_A1794 putative transposase-related ATP-binding subunit YP_958901.1 KEGG: pol:Bpro_5331 transposase, IS4 YP_958902.1 PFAM: transposase, mutator type; KEGG: bxe:Bxe_B0295 transposase YP_958903.1 KEGG: pol:Bpro_5331 transposase, IS4 YP_958904.1 KEGG: mca:MCA2548 hypothetical protein YP_958906.1 PFAM: polysaccharide deacetylase; KEGG: mca:MCA0187 hypothetical protein YP_958907.1 TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II; asparagine synthase; KEGG: noc:Noc_2478 asparagine synthase, glutamine-hydrolyzing YP_958908.1 PFAM: polysaccharide biosynthesis protein; KEGG: rru:Rru_A3093 membrane protein involved in the export of O-antigen and teichoic acid-like YP_958909.1 PFAM: glycosyl transferase, group 1; KEGG: dde:Dde_0846 glycosyltransferase-like YP_958910.1 KEGG: gsu:GSU1954 hypothetical protein YP_958911.1 PFAM: polysaccharide deacetylase; KEGG: sus:Acid_5417 polysaccharide deacetylase YP_958912.1 PFAM: glycosyl transferase, group 1; KEGG: dde:Dde_0839 glycosyltransferase-like YP_958913.1 PFAM: glycosyl transferase, family 2; KEGG: ana:alr3073 probable glycosyl transferase YP_958915.1 PFAM: acid phosphatase/vanadium-dependent haloperoxidase related; KEGG: dsy:DSY2350 hypothetical protein YP_958916.1 catalyzes the formation of decaprenylphosphoryl-5-phosphoribose from phosphoribose diphosphate and decaprenyl phosphate YP_958917.1 KEGG: cte:CT0171 hypothetical protein YP_958918.1 PFAM: FAD linked oxidase domain protein; KEGG: dar:Daro_1709 FAD linked oxidase, N-terminal YP_958919.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dar:Daro_1708 short-chain dehydrogenase/reductase SDR YP_958920.1 KEGG: gsu:GSU1948 hypothetical protein YP_958921.1 PFAM: glycosyl transferase, group 1; KEGG: mta:Moth_0666 glycosyl transferase, group 1 YP_958922.1 KEGG: gsu:GSU1951 hypothetical protein YP_958923.1 KEGG: nmu:Nmul_A0291 possible CapK protein YP_958924.1 PFAM: glycosyl transferase, group 1; KEGG: gsu:GSU1976 glycosyl transferase, group 1 family protein YP_958925.1 PFAM: acyltransferase 3; KEGG: chu:CHU_0898 acyltransferase family protein YP_958926.1 PFAM: glycosyl transferase, family 2; KEGG: gsu:GSU1977 glycosyl transferase, group 2 family protein YP_958927.1 PFAM: polysaccharide deacetylase; KEGG: hch:HCH_02719 predicted xylanase/chitin deacetylase YP_958928.1 KEGG: hch:HCH_02718 hypothetical protein YP_958929.1 KEGG: hch:HCH_02717 putative polysaccharide biosynthesis protein YP_958930.1 PFAM: lipopolysaccharide biosynthesis; KEGG: hch:HCH_02716 uncharacterized protein involved in exopolysaccharide biosynthesis YP_958931.1 PFAM: polysaccharide export protein; KEGG: hch:HCH_02715 periplasmic protein involved in polysaccharide export YP_958932.1 PFAM: sugar transferase; KEGG: hch:HCH_02714 sugar transferase involved in lipopolysaccharide synthesis YP_958933.1 functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C YP_958934.1 TIGRFAM: putative AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453; KEGG: reu:Reut_A1811 protein of unknown function DUF453 YP_958935.1 Catalyzes the conversion of citrate to isocitrate YP_958936.1 catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity YP_958937.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate YP_958938.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: hch:HCH_02709 transcriptional regulator YP_958939.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space YP_958941.1 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan YP_958943.1 TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: hch:HCH_04897 UTP-glucose-1-phosphate uridylyltransferase YP_958944.1 KEGG: hch:HCH_04898 hypothetical protein YP_958945.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: csa:Csal_1173 bifunctional deaminase-reductase-like protein YP_958946.1 KEGG: csa:Csal_1174 hypothetical protein YP_958947.1 PFAM: glycosyl transferase, group 1; KEGG: csa:Csal_1176 glycosyl transferase, group 1 YP_958948.1 KEGG: csa:Csal_1177 hypothetical protein YP_958949.1 KEGG: csa:Csal_1178 putative dehydrogenase YP_958950.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: csa:Csal_1179 CDP-alcohol phosphatidyltransferase YP_958951.1 PFAM: YceI family protein; KEGG: rde:RD1_2350 YceI-like family protein YP_958952.1 KEGG: sfr:Sfri_0197 hypothetical protein YP_958953.1 KEGG: sdn:Sden_1123 hypothetical protein YP_958954.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: abo:ABO_1115 hypothetical protein YP_958956.1 KEGG: pst:PSPTO_2025 hypothetical protein YP_958957.1 PFAM: pseudouridine synthase; KEGG: hch:HCH_02226 pseudouridylate synthases, 23S RNA-specific YP_958958.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: hch:HCH_04902 nucleoside-diphosphate-sugar epimerase YP_958959.1 KEGG: hch:HCH_04903 hypothetical protein YP_958960.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_958961.1 KEGG: hch:HCH_04905 uncharacterized lipoprotein YP_958962.1 TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: hch:HCH_04906 dihydrodipicolinate synthase YP_958963.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: ppu:PP_1235 AhpC/TSA family protein YP_958964.1 PFAM: protein of unknown function UPF0118; KEGG: hch:HCH_04909 predicted permease YP_958965.1 PFAM: SirA family protein; KEGG: hch:HCH_04910 predicted redox protein, regulator of disulfide bond formation YP_958966.1 PFAM: peptidase M48, Ste24p; Tetratricopeptide TPR_2 repeat protein; KEGG: hch:HCH_04911 putative Zn-dependent protease, contains TPR repeats YP_958967.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_958968.1 TIGRFAM: Tetratricopeptide domain protein; KEGG: hch:HCH_04913 hypothetical protein YP_958969.1 PFAM: OmpA/MotB domain protein; KEGG: hch:HCH_04914 outer membrane protein and related peptidoglycan-associated (LipO)protein YP_958970.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA YP_958971.1 TIGRFAM: TonB family protein; PFAM: TolA family protein; KEGG: hch:HCH_04916 TolA family protein YP_958972.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: csa:Csal_1851 biopolymer transport protein ExbD/TolR YP_958973.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: hch:HCH_04919 biopolymer transport protein YP_958974.1 PFAM: thioesterase superfamily protein; KEGG: hch:HCH_04920 predicted thioesterase YP_958975.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_958976.1 KEGG: sdy:SDY_1148 Holliday junction helicase subunit B; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: RuvA domain protein; DNA recombination protein RuvA, domain I; SMART: Helix-hairpin-helix DNA-binding, class 1 YP_958977.1 TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; KEGG: ilo:IL1087 holliday junction resolvasome, endonuclease subunit YP_958978.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_958979.1 negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis YP_958980.1 PFAM: histidine triad (HIT) protein; KEGG: hch:HCH_04937 diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase YP_958981.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: hch:HCH_04938 predicted UDP-glucose 6-dehydrogenase YP_958982.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: hch:HCH_04939 UDP-glucose 4-epimerase YP_958983.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: hch:HCH_04940 cytosine/adenosine deaminases YP_958984.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: csa:Csal_1091 alcohol dehydrogenase GroES-like protein YP_958985.1 KEGG: tbd:Tbd_1811 hypothetical protein YP_958986.1 PFAM: DNA mismatch endonuclease vsr; KEGG: nha:Nham_2517 DNA mismatch endonuclease vsr YP_958987.1 KEGG: net:Neut_2260 conserved hypothetical protein YP_958989.1 PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: net:Neut_2258 TrbL/VirB6 plasmid conjugal transfer protein YP_958990.1 KEGG: net:Neut_0674 hypothetical protein YP_958991.1 KEGG: net:Neut_2257 putative mating pair formation protein YP_958992.1 PFAM: transposase, mutator type; KEGG: net:Neut_0357 transposase, mutator type YP_958993.1 KEGG: net:Neut_2256 putative stabilization protein YP_958994.1 PFAM: replication C family protein; KEGG: sty:HCM1.221 putative replication protein YP_958995.1 KEGG: net:Neut_2254 putative DNA helicase YP_958996.1 PFAM: Prophage CP4-57 regulatory; KEGG: net:Neut_2253 phage transcriptional regulator, AlpA YP_958997.1 PFAM: phage integrase family protein; KEGG: pau:PA14_15350 putative integrase YP_958998.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_958999.1 KEGG: hch:HCH_04943 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase YP_959000.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides YP_959001.1 PFAM: AMP-dependent synthetase and ligase; KEGG: aeh:Mlg_1396 AMP-dependent synthetase and ligase YP_959002.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: hch:HCH_04707 cold shock protein YP_959003.1 TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: hch:HCH_05146 2-isopropylmalate synthase YP_959004.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: hch:HCH_05144 transcriptional regulator YP_959005.1 PFAM: regulatory protein, TetR; KEGG: hch:HCH_04770 transcriptional regulator YP_959006.1 TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S); Anticodon-binding domain protein; YbaK/prolyl-tRNA synthetase associated region; KEGG: hch:HCH_04773 prolyl-tRNA synthetase YP_959007.1 KEGG: pst:PSPTO_3842 UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein YP_959008.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: pau:PA14_25540 phosphotyrosine protein phosphatase YP_959009.1 KEGG: hch:HCH_02706 3-deoxy-D-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase YP_959010.1 PFAM: protein of unknown function DUF343; KEGG: hch:HCH_02705 hypothetical protein YP_959011.1 KEGG: aeh:Mlg_1434 tetraacyldisaccharide 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase YP_959012.1 KEGG: hch:HCH_02703 lipid A export ATP-binding/permease protein MsbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase YP_959013.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: hch:HCH_02701 biopolymer transport protein YP_959014.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: hch:HCH_02700 biopolymer transport protein YP_959015.1 TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: mca:MCA2627 DNA internalization-related competence protein ComEC/Rec2 YP_959016.1 KEGG: hch:HCH_02698 hypothetical protein YP_959017.1 KEGG: psb:Psyr_1905 ABC transporter; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_959018.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: hch:HCH_02350 ABC-type transport system, involved in lipoprotein release, permease component YP_959019.1 KEGG: pfl:PFL_1960 hypothetical protein YP_959020.1 KEGG: hch:HCH_02348 hypothetical protein YP_959021.1 PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: hch:HCH_02347 Peptidylarginine deiminase and related enzyme YP_959022.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: abo:ABO_1046 carbon-nitrogen hydrolase family protein YP_959023.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: pau:PA14_26910 putative MoxR protein YP_959024.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: hch:HCH_02344 thioredoxin-disulfide reductase YP_959025.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate YP_959026.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_959027.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA YP_959028.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: hch:HCH_02337 cold shock protein YP_959029.1 PFAM: pseudouridine synthase; KEGG: psp:PSPPH_4378 ribosomal large subunit pseudouridine synthase E YP_959030.1 PFAM: NUDIX hydrolase; KEGG: psb:Psyr_3189 NUDIX hydrolase YP_959031.1 PFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; PP-loop domain protein; KEGG: pau:PA14_30150 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase YP_959032.1 HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis YP_959033.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_959034.1 PFAM: Cupin 4 family protein; SMART: transcription factor jumonji, jmjC domain protein; KEGG: psp:PSPPH_3105 YcfD protein YP_959035.1 PFAM: GCN5-related N-acetyltransferase; KEGG: hch:HCH_02329 histone acetyltransferase HPA2/related acetyltransferase YP_959036.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: hch:HCH_02324 transcriptional regulator YP_959037.1 KEGG: hch:HCH_02307 hypothetical protein YP_959038.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: hch:HCH_02306 signal transduction histidine kinase YP_959039.1 PFAM: regulatory protein, MarR; KEGG: rru:Rru_A0021 transcriptional regulator, MarR family YP_959040.1 PFAM: glutathione peroxidase; KEGG: bte:BTH_I2011 glutathione peroxidase YP_959041.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor YP_959042.1 KEGG: hch:HCH_02300 hypothetical protein YP_959043.1 PFAM: peptidase M48, Ste24p; HtpX domain protein; KEGG: hch:HCH_02296 Zn-dependent protease with chaperone function YP_959044.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: hch:HCH_02292 phosphoglycerate dehydrogenase and related dehydrogenase YP_959045.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: abo:ABO_1920 ATP-dependent RNA helicase RhlB YP_959046.1 PFAM: protein of unknown function DUF462; KEGG: csa:Csal_2402 protein of unknown function DUF462 YP_959047.1 PFAM: cytochrome c biogenesis protein, transmembrane region; Thioredoxin domain; KEGG: hch:HCH_02282 thiol:disulfide interchange protein YP_959048.1 PFAM: SirA family protein; KEGG: hch:HCH_02280 predicted redox protein, regulator of disulfide bond formation YP_959049.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: hch:HCH_02279 hypothetical protein YP_959050.1 KEGG: eca:ECA1017 hypothetical protein YP_959051.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor, extracellular region 2; Diverse 7TM receptor, transmembrane region; KEGG: sde:Sde_3939 response regulator receiver domain protein (CheY-like) YP_959052.1 KEGG: abo:ABO_1591 alpha/beta-hydrolase protein family, putative YP_959053.1 TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; PFAM: cytochrome c oxidase, subunit I; KEGG: hch:HCH_02276 cytochrome c oxidase, cbb3-type, subunit I YP_959054.1 TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase, mono-heme subunit/FixO; KEGG: hch:HCH_02275 cytochrome c oxidase, cbb3-type, subunit II YP_959055.1 PFAM: Cbb3-type cytochrome oxidase component; KEGG: hch:HCH_02274 cytochrome c oxidase, cbb3-type, subunit CcoQ YP_959056.1 TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c, class I; KEGG: hch:HCH_02273 cytochrome c oxidase, cbb3-type, subunit III YP_959057.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: hch:HCH_02272 polyferredoxin YP_959058.1 KEGG: dar:Daro_0718 hypothetical protein YP_959059.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: hch:HCH_02269 copper-translocating P-type ATPase YP_959060.1 TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: hch:HCH_02268 cytochrome oxidase maturation protein, cbb3-type YP_959061.1 KEGG: pfo:Pfl_1814 hypothetical protein YP_959062.1 PFAM: PP-loop domain protein; KEGG: hch:HCH_02174 predicted ATPase of the PP-loop superfamily implicated in cell cycle control YP_959063.1 PFAM: regulatory protein, TetR; KEGG: ccr:CC0772 transcriptional regulator, TetR family YP_959064.1 PFAM: heat shock protein DnaJ domain protein; KEGG: pae:PA1191 hypothetical protein YP_959065.1 PFAM: polysaccharide deacetylase; KEGG: hch:HCH_02169 predicted xylanase/chitin deacetylase YP_959066.1 KEGG: hch:HCH_02168 hypothetical protein YP_959067.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: hch:HCH_02167 long-chain fatty acid transport protein YP_959068.1 PFAM: transposase, IS4 family protein; KEGG: sme:SMc03260 putative transposase for insertion sequence ISRM17 YP_959069.1 KEGG: hch:HCH_02166 hypothetical protein YP_959070.1 PFAM: peptidase C39, bacteriocin processing; KEGG: hch:HCH_02165 predicted double-glycine peptidase YP_959071.1 TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: csa:Csal_1795 anion transporter YP_959072.1 KEGG: csa:Csal_1430 transcriptional regulators, TraR/DksA family YP_959073.1 KEGG: csa:Csal_2464 hypothetical protein YP_959074.1 TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: hch:HCH_02425 poly(3-hydroxyalkanoate) synthetase YP_959075.1 KEGG: aeh:Mlg_2675 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; CBS domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_959076.1 KEGG: hch:HCH_02634 hypothetical protein YP_959077.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: hch:HCH_02633 biopolymer transport protein YP_959078.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: hch:HCH_02632 hypothetical protein YP_959079.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: hch:HCH_02631 biopolymer transport protein YP_959080.1 KEGG: hch:HCH_02604 hypothetical protein YP_959081.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: hch:HCH_02603 FOG: TPR repeat YP_959082.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: hch:HCH_02602 hypothetical protein YP_959083.1 KEGG: hch:HCH_02601 protein containing tetratricopeptide repeats YP_959084.1 KEGG: hch:HCH_02600 hypothetical protein YP_959085.1 KEGG: hch:HCH_02599 hypothetical protein YP_959086.1 KEGG: hch:HCH_02598 hypothetical protein YP_959087.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; Thioredoxin domain; KEGG: hch:HCH_02597 thiol-disulfide isomerase and thioredoxins YP_959088.1 KEGG: hch:HCH_02596 hypothetical protein YP_959089.1 PFAM: protein of unknown function DUF1058; KEGG: hch:HCH_02595 hypothetical protein YP_959090.1 KEGG: hch:HCH_02594 hypothetical protein YP_959091.1 KEGG: hch:HCH_02593 hypothetical protein YP_959092.1 KEGG: hch:HCH_02592 hypothetical protein YP_959093.1 KEGG: hch:HCH_02591 hypothetical protein YP_959094.1 PFAM: ApbE family lipoprotein; KEGG: hch:HCH_02590 membrane-associated lipoprotein involved in thiamine biosynthesis YP_959095.1 PFAM: Extracellular ligand-binding receptor; KEGG: hch:HCH_01937 ABC-type branched-chain amino acid transport system, periplasmic component YP_959096.1 in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane YP_959097.1 PFAM: Uracil-DNA glycosylase superfamily; KEGG: neu:NE1122 hypothetical protein YP_959098.1 KEGG: hch:HCH_00434 glucokinase; TIGRFAM: glucokinase; PFAM: Glucokinase YP_959099.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate YP_959100.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_959101.1 KEGG: hch:HCH_00349 2-keto-3-deoxy-6-phosphogluconate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase YP_959102.1 TIGRFAM: 6-phosphogluconolactonase; KEGG: hch:HCH_00348 6-phosphogluconolactonase YP_959103.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_959104.1 Represses the expression of the zwf, eda, glp and gap YP_959105.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: hch:HCH_02164 parvulin-like peptidyl-prolyl isomerase YP_959106.1 PFAM: histone family protein DNA-binding protein; KEGG: hch:HCH_02163 bacterial nucleoid DNA-binding protein YP_959107.1 KEGG: hch:HCH_02162 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase YP_959108.1 binds and unfolds substrates as part of the ClpXP protease YP_959109.1 KEGG: csa:Csal_2046 ATP-dependent Clp protease, proteolytic subunit ClpP; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14, ClpP YP_959110.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_959111.1 PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: csa:Csal_2048 methylenetetrahydrofolate dehydrogenase (NADP+) YP_959112.1 catalyzes the formation of malate from glyoxylate and acetyl-CoA YP_959113.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_959114.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_959115.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: hch:HCH_02152 peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family YP_959116.1 TIGRFAM: UDP-2,3-diacylglucosamine hydrolase; PFAM: metallophosphoesterase; KEGG: pau:PA14_41400 putative UDP-2,3-diacylglucosamine hydrolase YP_959117.1 PFAM: ChaB family protein; KEGG: nmu:Nmul_A2443 ChaB YP_959118.1 TIGRFAM: ectoine hydroxylase; PFAM: Phytanoyl-CoA dioxygenase; KEGG: csa:Csal_3003 ectoine hydroxylase YP_959119.1 KEGG: hch:HCH_00407 hypothetical protein YP_959120.1 PFAM: response regulator receiver; KEGG: rpd:RPD_1497 ATP-binding region, ATPase-like YP_959121.1 PFAM: Integrase, catalytic region; KEGG: eba:ebA2485 transposase YP_959122.1 PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; SMART: AAA ATPase; KEGG: hch:HCH_06235 IstB helper protein, IS21 family YP_959123.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: csa:Csal_0983 transcriptional regulator, Crp/Fnr family YP_959124.1 KEGG: mma:MM2393 hypothetical protein YP_959125.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: hch:HCH_04388 flavodoxin reductases (ferredoxin-NADPH reductases) family 1 YP_959126.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: hch:HCH_04389 transcriptional regulator YP_959127.1 PFAM: tRNA--hydroxylase; KEGG: abo:ABO_1203 tRNA-(ms(2)io(6)a)-hydroxylase YP_959128.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate YP_959129.1 TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: csa:Csal_1248 sodium/proline symporter YP_959130.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: hch:HCH_01825 AraC-type DNA-binding domain-containing protein YP_959131.1 PFAM: thymidylate kinase; KEGG: pen:PSEEN1624 thymidylate kinase YP_959132.1 PFAM: aminodeoxychorismate lyase; KEGG: pau:PA14_25730 putative aminodeoxychorismate lyase YP_959133.1 PFAM: aminotransferase, class IV; KEGG: noc:Noc_1662 aminotransferase, class IV YP_959134.1 PFAM: beta-ketoacyl synthase; KEGG: pau:PA14_25690 beta-ketoacyl-acyl carrier protein synthase II YP_959135.1 TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; KEGG: hch:HCH_02145 acyl carrier protein YP_959136.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: ppu:PP_1914 3-oxoacyl-(acyl-carrier-protein) reductase YP_959137.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase domain protein; KEGG: pfo:Pfl_4158 malonyl CoA-acyl carrier protein transacylase YP_959138.1 TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein; KEGG: lpp:lpp1347 fatty acid/phospholipid synthesis protein YP_959139.1 TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: hch:HCH_10002 ribosomal protein L32 YP_959140.1 PFAM: protein of unknown function DUF177; KEGG: csa:Csal_1597 protein of unknown function DUF177 YP_959141.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: stm:STM1189 putative inhibitor of septum formation YP_959142.1 PFAM: peptidase S49; KEGG: hch:HCH_02138 periplasmic serine protease (ClpP class) YP_959143.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: csa:Csal_1594 HAD-superfamily hydrolase, subfamily IA, variant 1 YP_959144.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: msu:MS1624 pseudouridylate synthases, 23S RNA-specific YP_959145.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: hch:HCH_02135 ribonucleases G and E YP_959146.1 TIGRFAM: yecA family protein; KEGG: hch:HCH_02133 predicted metal-binding protein related to the C-terminal domain of SecA YP_959147.1 PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: sde:Sde_1718 hypothetical protein YP_959148.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity YP_959149.1 PFAM: SH3, type 3 domain protein; SMART: SH3 domain protein domain protein; KEGG: hch:HCH_02128 SH3 domain protein YP_959150.1 PFAM: type IV pilus assembly PilZ; KEGG: hch:HCH_02127 hypothetical protein YP_959151.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity YP_959152.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_959153.1 PFAM: protein of unknown function DUF299; KEGG: hch:HCH_02122 hypothetical protein YP_959154.1 PFAM: peptidase M16 domain protein; Peptidase M16C associated domain protein; KEGG: noc:Noc_2076 peptidase M16-like YP_959155.1 KEGG: hch:HCH_02118 hypothetical protein YP_959156.1 PFAM: MORN repeat-containing protein; PEGA domain protein; KEGG: hch:HCH_02117 hypothetical protein YP_959157.1 PFAM: response regulator receiver; KEGG: hch:HCH_02116 FOG: CheY-like receiver YP_959158.1 KEGG: abo:ABO_2115 hypothetical protein YP_959159.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_959160.1 PFAM: periplasmic solute binding protein; KEGG: sme:SMc04245 probable high-affinity zinc uptake system ABC transporter protein YP_959161.1 PFAM: Auxin Efflux Carrier; KEGG: hch:HCH_06644 predicted permease YP_959162.1 KEGG: abo:ABO_2326 nucleoside diphosphate kinase regulator YP_959163.1 PFAM: cytochrome P450; KEGG: bmb:BruAb2_0813 hypothetical heme-thiolate monooxygenase YP_959164.1 TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: plu:plu2551 selenide, water dikinase (selenophosphate synthase) (selenium donnor protein) YP_959165.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: ape:APE1226 cystathionine gamma-lyase YP_959166.1 KEGG: pfl:PFL_2978 hypothetical protein YP_959167.1 PFAM: glycosyl transferase, group 1; KEGG: nmu:Nmul_A1732 glycosyl transferase, group 1 YP_959168.1 KEGG: pau:PA14_24530 hypothetical protein YP_959169.1 KEGG: pae:PA3061 hypothetical protein YP_959170.1 KEGG: pau:PA14_24500 putative lipoprotein YP_959171.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: nmu:Nmul_A1735 tetratricopeptide TPR_4 YP_959172.1 KEGG: pae:PA3064 hypothetical protein YP_959173.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sme:SMc02271 ribitol type dehydrogenase protein YP_959174.1 catalyzes the formation of methylglyoxal from glycerone phosphate YP_959175.1 KEGG: shm:Shewmr7_0582 hypothetical protein YP_959176.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: ppu:PP_3827 hypothetical protein YP_959177.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: she:Shewmr4_1722 methyltransferase type 12 YP_959178.1 PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sfr:Sfri_3842 type III restriction enzyme, res subunit YP_959179.1 KEGG: eca:ECA1107 hypothetical protein YP_959180.1 SMART: helix-turn-helix domain protein; KEGG: ecp:ECP_4776 putative bacterial regulatory protein, MerR family YP_959181.1 KEGG: son:SOA0069 hypothetical protein YP_959182.1 KEGG: abo:ABO_0074 CBS domain protein YP_959183.1 PFAM: Uncharacterised conserved protein UCP025560; KEGG: ilo:IL1245 hypothetical protein YP_959184.1 KEGG: ilo:IL1246 possible outer membrane lipoprotein YP_959185.1 KEGG: pae:PA5307 hypothetical protein YP_959186.1 TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase, DuS; KEGG: pfo:Pfl_3824 dihydrouridine synthase TIM-barrel protein YjbN YP_959187.1 KEGG: pat:Patl_3622 transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase YP_959188.1 PFAM: protein of unknown function DUF1332; KEGG: hch:HCH_06740 hypothetical protein YP_959189.1 PFAM: DAHP synthetase I/KDSA; KEGG: hch:HCH_02697 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase YP_959190.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: hch:HCH_02696 glycerophosphoryl diester phosphodiesterase YP_959191.1 catalyzes the conversion of NADPH to NADH YP_959192.1 PFAM: protein of unknown function DUF539; KEGG: hch:HCH_02693 hypothetical protein YP_959193.1 PFAM: ApbE family lipoprotein; KEGG: csa:Csal_1575 ApbE-like lipoprotein YP_959194.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_959195.1 Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol. YP_959196.1 Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm YP_959197.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_959198.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_959199.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_959200.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent YP_959201.1 KEGG: pae:PA3002 transcription-repair coupling protein Mfd; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like YP_959202.1 KEGG: hch:HCH_02682 hypothetical protein YP_959203.1 PFAM: purine phosphorylase, family 2; KEGG: hch:HCH_02681 methylthioadenosine phosphorylase YP_959204.1 PFAM: MscS Mechanosensitive ion channel; KEGG: hch:HCH_02680 small-conductance mechanosensitive channel YP_959205.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: eba:ebA5408 hypothetical protein YP_959206.1 PFAM: regulatory protein, TetR; KEGG: hch:HCH_02677 transcriptional regulator YP_959207.1 KEGG: hch:HCH_02674 hypothetical protein YP_959208.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_959209.1 PFAM: methyltransferase small; Methyltransferase type 12; KEGG: pst:PSPTO_4645 methyltransferase, putative YP_959210.1 PFAM: methyltransferase small; Methyltransferase small, N-terminal domain protein; KEGG: pae:PA4627 ribosomal RNA small subunit methyltransferase C YP_959211.1 PFAM: carbonic anhydrase; KEGG: rso:RSc0277 probable carbonic anhydrase protein YP_959212.1 PFAM: NAD-glutamate dehydrogenase; KEGG: hch:HCH_04777 NAD-specific glutamate dehydrogenase YP_959213.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: pau:PA14_24430 putative MoxR-like ATPase YP_959214.1 PFAM: protein of unknown function DUF58; KEGG: mca:MCA3083 hypothetical protein YP_959215.1 KEGG: xom:XOO_1065 hypothetical protein YP_959216.1 PFAM: von Willebrand factor, type A; KEGG: hch:HCH_04783 uncharacterized protein containing a von Willebrand factor type A (vWA) domain YP_959217.1 PFAM: TPR repeat-containing protein; von Willebrand factor, type A; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pat:Patl_1658 TPR repeat YP_959218.1 KEGG: hch:HCH_04785 hypothetical protein YP_959219.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: bpa:BPP2886 transposase YP_959220.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: hch:HCH_04361 cytochrome c biogenesis factor YP_959221.1 PFAM: cytochrome C biogenesis protein; KEGG: pen:PSEEN3775 cytochrome c-type biogenesis protein CycL YP_959222.1 TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: Redoxin domain protein; KEGG: vch:VC2051 thiol:disulfide interchange protein DsbE YP_959223.1 TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: hch:HCH_04364 cytochrome c-type biogenesis protein CcmF YP_959224.1 PFAM: CcmE/CycJ protein; KEGG: pae:PA1479 cytochrome C-type biogenesis protein CcmE YP_959225.1 KEGG: pha:PSHAa0825 heme exporter protein D (cytochrome c-type biogenesis protein CcmD) YP_959226.1 TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: pfo:Pfl_1579 cytochrome c-type biogenesis protein CcmC YP_959227.1 TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: hch:HCH_04368 heme exporter protein CcmB YP_959228.1 ATP-binding protein; required for proper cytochrome c maturation YP_959229.1 KEGG: pfo:Pfl_1576 hypothetical protein YP_959230.1 KEGG: hch:HCH_04371 uncharacterized flagellar protein FhlB cytoplasmic domain YP_959231.1 PFAM: ATPase associated with various cellular activities, AAA_5; KEGG: lic:LIC12902 hypothetical protein YP_959232.1 PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: noc:Noc_2895 type II secretion system protein E YP_959233.1 KEGG: sfr:Sfri_1208 hypothetical protein YP_959234.1 PFAM: CheW domain protein; KEGG: hch:HCH_05161 chemotaxis signal transduction protein YP_959235.1 PFAM: CheW domain protein; KEGG: hch:HCH_05162 protein containing CheW-like domain YP_959236.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: hch:HCH_05163 ATPase involved in chromosome partitioning YP_959237.1 Homologous to MotB. These organism have both MotB and MotD. With MotC (a MotA homolog) forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine. Either MotAB or MotCD is sufficient for swimming, but both are necessary for swarming motility YP_959238.1 homologous to MotA; this protein with a related protein (a MotB homolog) forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; either MotAB or MotCD is sufficient for swimming, but both are necessary for swarming motility; these organisms have both MotA and MotC YP_959239.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins YP_959240.1 PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: hch:HCH_05168 chemotaxis protein histidine kinase and related kinase YP_959241.1 PFAM: Chemotaxis phosphatase, CheZ; KEGG: hch:HCH_05169 chemotaxis protein YP_959242.1 PFAM: response regulator receiver; KEGG: hch:HCH_05170 FOG: CheY-like receiver YP_959243.1 TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: hch:HCH_05171 flagellar biosynthesis sigma factor FliA YP_959244.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: hch:HCH_05172 flagellar synthesis regulator FleN YP_959245.1 PFAM: GTP-binding signal recognition particle SRP54, G- domain; SMART: AAA ATPase; KEGG: hch:HCH_05173 flagellar GTP-binding protein YP_959246.1 membrane protein involved in the flagellar export apparatus YP_959247.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_959248.1 TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: hch:HCH_04644 xanthine/uracil permease YP_959249.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export YP_959250.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus YP_959251.1 with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus YP_959252.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus YP_959253.1 PFAM: flagellar biosynthesis protein, FliO; KEGG: hch:HCH_05179 flagellar biogenesis protein YP_959254.1 One of three proteins involved in switching the direction of the flagellar rotation YP_959255.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation YP_959256.1 PFAM: flagellar basal body-associated protein FliL; KEGG: pen:PSEEN3807 flagellar protein FliL YP_959257.1 PFAM: flagellar hook-length control protein; KEGG: hch:HCH_05183 flagellar hook-length control protein YP_959258.1 PFAM: Hpt domain protein; KEGG: hch:HCH_05184 FOG: HPt domain YP_959259.1 PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: hch:HCH_05185 response regulator containing a CheY-like receiver domain and a GGDEF domain YP_959260.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: hch:HCH_05187 protein containing STAS (sulphate transporter and AntiSigma factor antagonist) domain YP_959261.1 TIGRFAM: flagellar export protein FliJ; KEGG: hch:HCH_05189 flagellar biosynthesis chaperone YP_959262.1 involved in type III protein export during flagellum assembly YP_959263.1 PFAM: flagellar assembly protein FliH; KEGG: hch:HCH_05191 putative flagellar assembly protein YP_959264.1 One of three proteins involved in switching the direction of the flagellar rotation YP_959265.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod YP_959266.1 TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: hch:HCH_05195 flagellar hook-basal body complex protein (FliE) YP_959267.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: hch:HCH_05196 sigma 54-dependent transcriptional activator containing CheY-like receiver domain YP_959268.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: PAS domain containing protein; KEGG: hch:HCH_05197 signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation YP_959269.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; flagellar regulatory FleQ domain protein; SMART: AAA ATPase; KEGG: hch:HCH_05199 transcription regulator FleQ (sigma 54-dependent transcriptional activator) YP_959271.1 PFAM: protein of unknown function DUF1329; KEGG: hch:HCH_02064 protein of unknown function (DUF1329) YP_959273.1 KEGG: pen:PSEEN3723 hypothetical protein YP_959274.1 KEGG: yps:YPTB1454 putative cell division inhibitor YP_959275.1 Represses a number of genes involved in the response to DNA damage YP_959276.1 KEGG: ilo:IL1070 hypothetical protein YP_959277.1 PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: sde:Sde_2941 glutamine amidotransferase related enzyme YP_959278.1 PFAM: protein of unknown function DUF541; KEGG: nwi:Nwi_2778 protein of unknown function DUF541 YP_959279.1 PFAM: protein of unknown function DUF490; KEGG: psb:Psyr_2479 protein of unknown function DUF490 YP_959280.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: ppu:PP_2892 putative outer membrane protein YP_959281.1 KEGG: hch:HCH_02754 hypothetical protein YP_959282.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis YP_959283.1 involved in the import of serine and threonine coupled with the import of sodium YP_959284.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_959285.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_959287.1 KEGG: hch:HCH_04600 hypothetical protein YP_959288.1 KEGG: hch:HCH_04602 hypothetical protein YP_959289.1 KEGG: hch:HCH_04603 phosphoribosylcarboxyaminoimidazole (NCAIR) mutase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_959290.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway YP_959291.1 PFAM: manganese and iron superoxide dismutase; KEGG: hch:HCH_04606 superoxide dismutase YP_959292.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: hch:HCH_04607 predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain YP_959293.1 PFAM: LemA family protein; KEGG: hch:HCH_04608 hypothetical protein YP_959294.1 PFAM: peptidase M48, Ste24p; KEGG: abo:ABO_1909 protease, putative YP_959295.1 TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: hch:HCH_04610 type II secretory pathway, component PulD YP_959296.1 KEGG: hch:HCH_04611 general secretion pathway protein C YP_959297.1 KEGG: hch:HCH_04612 hypothetical protein YP_959298.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_959299.1 PFAM: chaperonin Cpn10; KEGG: hch:HCH_04614 Co-chaperonin GroES (HSP10) YP_959300.1 PFAM: FxsA cytoplasmic membrane protein; KEGG: vvy:VV3117 protein affecting phage T7 exclusion by the F plasmid YP_959301.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_959302.1 TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: pat:Patl_4291 methylated-DNA--protein-cysteine methyltransferase YP_959303.1 TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: hch:HCH_04987 tartrate dehydratase alpha subunit/fumarate hydratase class I, N-terminal domain YP_959304.1 KEGG: hch:HCH_04988 hypothetical protein YP_959305.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pfo:Pfl_4235 alpha-methylacyl-CoA racemase YP_959306.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: hch:HCH_04634 AraC-type DNA-binding domain-containing protein YP_959307.1 KEGG: hch:HCH_05012 protein containing tetratricopeptide repeat YP_959308.1 PFAM: protein of unknown function DUF195; KEGG: csa:Csal_2954 protein of unknown function DUF195 YP_959310.1 PFAM: protein of unknown function DUF785; KEGG: vch:VC1162 hypothetical protein YP_959311.1 KEGG: tcx:Tcr_1106 hypothetical protein YP_959312.1 TIGRFAM: alpha-L-glutamate ligase-like protein; KEGG: tcx:Tcr_1107 alpha-L-glutamate ligase-related protein YP_959313.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: abo:ABO_0808 choline/carnitine/betaine transporter family protein YP_959314.1 PFAM: ferredoxin-dependent glutamate synthase; KEGG: aeh:Mlg_0235 ferredoxin-dependent glutamate synthase YP_959315.1 PFAM: major facilitator superfamily MFS_1; KEGG: sit:TM1040_2672 major facilitator superfamily MFS_1 YP_959316.1 PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO1709 integral membrane transport protein YP_959317.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the protein from Pseudomonas does not have this domain YP_959318.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: sil:SPO3009 proline dehydrogenase transcriptional activator YP_959319.1 PFAM: glycerate kinase; KEGG: gka:GK3465 glycerate kinase YP_959320.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: mag:amb3351 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase YP_959321.1 KEGG: aeh:Mlg_2585 hypothetical protein YP_959322.1 PFAM: regulatory protein, MerR; KEGG: pfl:PFL_2118 transcriptional regulator, MerR family YP_959323.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control YP_959324.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_959325.1 KEGG: hch:HCH_04575 phenylalanyl-tRNA synthetase, alpha subunit; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase, class IIc; aminoacyl tRNA synthetase, class II domain protein YP_959326.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_959327.1 PFAM: ribosomal protein L35; KEGG: pcr:Pcryo_2301 ribosomal protein L35 YP_959328.1 PFAM: initiation factor 3; KEGG: hch:HCH_04579 translation initiation factor 3 (IF-3) YP_959329.1 TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S); TGS domain protein; Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase, SAD; KEGG: hch:HCH_04580 threonyl-tRNA synthetase YP_959330.1 TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ppr:PBPRA0388 putative TRAP-type uncharacterized transport system, fused permease component YP_959331.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: vpa:VP1655 immunogenic protein YP_959332.1 KEGG: hch:HCH_04584 predicted exporters of the RND superfamily YP_959333.1 KEGG: hch:HCH_04585 uncharacterized protein related to plant photosystem II stability/assembly factor YP_959334.1 PFAM: protein of unknown function DUF1329; KEGG: hch:HCH_04586 protein with unknown function (DUF1329) YP_959335.1 TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: pae:PA3083 aminopeptidase N YP_959336.1 KEGG: hch:HCH_04588 hypothetical protein YP_959337.1 PFAM: protein of unknown function DUF1315; KEGG: hch:HCH_04589 hypothetical protein YP_959338.1 PFAM: Rhomboid family protein; KEGG: csa:Csal_1309 rhomboid-like protein YP_959339.1 KEGG: hch:HCH_04591 diadenosine tetraphosphatase and related serine/threonine protein phosphatase YP_959340.1 catalyzes the phosphorylation of NAD to NADP YP_959341.1 KEGG: hch:HCH_04595 ATPase involved in DNA repair YP_959342.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: hch:HCH_04596 NADH:flavin oxidoreductase, Old Yellow enzyme family YP_959343.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: pau:PA14_24140 putative transcriptional regulator, AraC family YP_959344.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: abo:ABO_1715 transcriptional regulator, AraC family YP_959345.1 PFAM: MaoC domain protein dehydratase; KEGG: abo:ABO_1719 MaoC domain protein, putative YP_959346.1 PFAM: peptidase S16, lon domain protein; KEGG: hch:HCH_05226 predicted ATP-dependent protease YP_959347.1 KEGG: hch:HCH_05227 hypothetical protein YP_959348.1 KEGG: hch:HCH_04885 multimeric flavodoxin WrbA YP_959349.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_959350.1 PFAM: CinA domain protein; KEGG: yps:YPTB0822 putative competence-damaged protein YP_959351.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rfr:Rfer_1601 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_959352.1 PFAM: glycosyl transferase, family 2; KEGG: noc:Noc_0588 glycosyl transferase, family 2 YP_959353.1 KEGG: aeh:Mlg_0754 hypothetical protein YP_959354.1 This protein performs the mismatch recognition step during the DNA repair process YP_959355.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: csa:Csal_0620 4Fe-4S ferredoxin, iron-sulfur binding YP_959356.1 KEGG: abo:ABO_2692 hypothetical protein YP_959357.1 PFAM: DegV family protein; KEGG: xcv:XCV3635 DegV family protein YP_959358.1 KEGG: hch:HCH_06800 predicted metal-dependent hydrolase YP_959359.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: cps:CPS_4258 hypothetical protein YP_959360.1 activates fatty acids by binding to coenzyme A YP_959361.1 KEGG: ppu:PP_3552 sensory box histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_959362.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: pfl:PFL_2164 DNA-binding response regulator, LuxR family YP_959363.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: hch:HCH_06834 transcriptional regulator containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs YP_959365.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: abo:ABO_1724 phenazine biosynthesis-like protein, putative YP_959366.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; KEGG: hch:HCH_04127 predicted flavoprotein YP_959367.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: ppr:PBPRB1025 hypothetical protein YP_959368.1 PFAM: UspA domain protein; KEGG: ilo:IL2130 UspA-related nucleotide-binding protein YP_959369.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: ilo:IL2129 probable sulfate permease, MFS superfamily YP_959370.1 KEGG: aeh:Mlg_0542 membrane protein YP_959371.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: rpa:RPA1722 alkylated DNA repair protein YP_959372.1 PFAM: histidine kinase, HAMP region domain protein; KEGG: bbr:BB1564 hypothetical protein YP_959373.1 PFAM: heat shock protein DnaJ domain protein; KEGG: csa:Csal_0100 heat shock protein DnaJ-like protein YP_959374.1 KEGG: hch:HCH_00359 putative protein-S-isoprenylcysteine methyltransferase YP_959375.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_959376.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor, extracellular region 2; Diverse 7TM receptor, transmembrane region; KEGG: sde:Sde_3939 response regulator receiver domain protein (CheY-like) YP_959377.1 PFAM: pseudouridine synthase; KEGG: gme:Gmet_0267 pseudouridine synthase YP_959378.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: hch:HCH_06300 methyl-accepting chemotaxis protein YP_959379.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: hch:HCH_04033 membrane-fusion protein YP_959380.1 catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit YP_959381.1 KEGG: hch:HCH_06859 acetolactate synthase (isozyme II), small (regulatory) subunit YP_959382.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_959383.1 KEGG: abo:ABO_0648 acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein YP_959384.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: abo:ABO_2662 acyl-CoA dehydrogenase YP_959385.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bam:Bamb_2597 short-chain dehydrogenase/reductase SDR YP_959386.1 PFAM: regulatory protein, MerR; KEGG: sfr:Sfri_2726 transcriptional regulator, MerR family protein YP_959387.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: ilo:IL0874 acyl-CoA dehydrogenase YP_959388.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: sdn:Sden_3360 transposase IS116/IS110/IS902 YP_959389.1 PFAM: carboxyl transferase; KEGG: sfr:Sfri_2728 propionyl-CoA carboxylase YP_959390.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ilo:IL0876 enoyl-CoA hydratase/isomerase family protein YP_959391.1 PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: ilo:IL0877 3-methylcrotonyl-CoA carboxylase alpha chain YP_959392.1 PFAM: pyruvate carboxyltransferase; KEGG: dar:Daro_0086 pyruvate carboxyltransferase YP_959393.1 PFAM: lipolytic enzyme, G-D-S-L family; KEGG: abo:ABO_0574 hypothetical protein YP_959394.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: aeh:Mlg_1717 uncharacterized domain 1 YP_959395.1 KEGG: pae:PA3569 3-hydroxyisobutyrate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding YP_959396.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: hch:HCH_00639 enoyl-CoA hydratase/carnithine racemase YP_959397.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_959398.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: hch:HCH_00641 acyl-CoA dehydrogenase YP_959399.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: ilo:IL0870 methylmalonate-semialdehyde dehydrogenase YP_959400.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; Cupin 2, conserved barrel domain protein; KEGG: pae:PA3571 transcriptional regulator MmsR YP_959401.1 PFAM: extracellular solute-binding protein, family 1; KEGG: sdn:Sden_3031 extracellular solute-binding protein, family 1 YP_959402.1 KEGG: sdn:Sden_3030 spermidine/putrescine ABC transporter ATP-binding subunit; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase YP_959403.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sdn:Sden_3029 binding-protein-dependent transport systems inner membrane component YP_959404.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1273 polyamine ABC transporter, permease protein YP_959405.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: cps:CPS_1537 hydrophobe/amphiphile efflux-1 family protein YP_959406.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cps:CPS_1536 efflux transporter, MFP subunit, AcrA/E family YP_959407.1 PFAM: proline racemase; KEGG: csa:Csal_2339 proline racemase YP_959408.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: csa:Csal_2340 alcohol dehydrogenase, zinc-binding YP_959409.1 PFAM: protein of unknown function UPF0118; KEGG: rru:Rru_A3520 hypothetical protein YP_959410.1 PFAM: putative thiol-disulphide oxidoreductase DCC; KEGG: vpa:VPA0025 hypothetical protein YP_959411.1 KEGG: xcv:XCV4157 hypothetical protein YP_959412.1 PFAM: transposase, mutator type; KEGG: bxe:Bxe_B0295 transposase YP_959413.1 KEGG: sec:SC2242 putative inner membrane protein YP_959414.1 PFAM: protein of unknown function DUF323; KEGG: aci:ACIAD3113 hypothetical protein; putative conserved domain YP_959415.1 PFAM: Peptidoglycan-binding LysM; KEGG: aci:ACIAD3114 hypothetical protein YP_959416.1 KEGG: aeh:Mlg_0649 hypothetical protein YP_959417.1 PFAM: Rhs element Vgr protein; KEGG: eca:ECA2104 VgrG protein YP_959418.1 KEGG: bpm:BURPS1710b_A1412 hypothetical protein YP_959419.1 PFAM: beta-lactamase domain protein; KEGG: pau:PA14_56540 putative flavoprotein YP_959420.1 PFAM: protein of unknown function DUF28; KEGG: csa:Csal_0810 protein of unknown function DUF28 YP_959421.1 Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group YP_959422.1 KEGG: pau:PA14_28140 hypothetical protein YP_959423.1 KEGG: pae:PA2778 hypothetical protein YP_959424.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: aeh:Mlg_0420 methyltransferase type 12 YP_959425.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: pau:PA14_53520 transcriptional regulator OruR YP_959426.1 KEGG: aba:Acid345_1066 hypothetical protein YP_959427.1 KEGG: hch:HCH_02664 hypothetical protein YP_959428.1 PFAM: cobalamin synthesis protein, P47K; KEGG: hch:HCH_01308 putative GTPase (G3E family) YP_959429.1 TIGRFAM: 2'-5' RNA ligase; PFAM: 2',5' RNA ligase; KEGG: lic:LIC10097 2'-5' RNA ligase YP_959430.1 KEGG: hch:HCH_00592 hypothetical protein YP_959431.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: rfr:Rfer_2416 alpha/beta hydrolase fold-3 YP_959432.1 KEGG: pfo:Pfl_5432 hypothetical protein YP_959433.1 PFAM: Abortive infection protein; KEGG: aeh:Mlg_2598 abortive infection protein YP_959434.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: abo:ABO_0148 enoyl-CoA hydratase/isomerase, putative YP_959435.1 PFAM: beta-lactamase domain protein; KEGG: hch:HCH_04868 metal-dependent hydrolase of the beta-lactamase superfamily III YP_959436.1 KEGG: ilo:IL1557 antibiotic biosynthesis monooxygenase family enzyme YP_959437.1 PFAM: UspA domain protein; KEGG: aeh:Mlg_0834 UspA domain protein YP_959438.1 PFAM: protein of unknown function DUF980; KEGG: ana:all4231 hypothetical protein YP_959439.1 KEGG: sde:Sde_2806 hypothetical protein YP_959440.1 TIGRFAM: uncharacterized domain; PFAM: OsmC family protein; protein of unknown function DUF181; KEGG: ilo:IL2181 multidomain protein containing OsmC-like N-terminal domain and uncharacterized conserved domain YP_959441.1 PFAM: protein of unknown function DUF1428; KEGG: lpp:lpp2085 hypothetical protein YP_959442.1 PFAM: DGPFAETKE family protein; KEGG: hch:HCH_05597 hypothetical protein YP_959443.1 PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: hch:HCH_05594 predicted RNA polymerase sigma factor containing a TPR repeat domain YP_959444.1 PFAM: diacylglycerol kinase, catalytic region; KEGG: gbe:GbCGDNIH1_0844 diacylglycerol kinase family protein YP_959445.1 TIGRFAM: conserved hypothetical selenoprotein; PFAM: Selenoprotein W-related; KEGG: mca:MCA0202 hypothetical protein YP_959446.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pau:PA14_09870 hypothetical protein YP_959447.1 PFAM: protein of unknown function DUF461; KEGG: nha:Nham_2200 protein of unknown function DUF461 YP_959448.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: vvy:VVA1097 predicted signal transduction protein YP_959449.1 PFAM: protein of unknown function DUF533; KEGG: csa:Csal_1008 protein of unknown function DUF533 YP_959450.1 TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein-like; KEGG: pau:PA14_01560 putative alkylphosphonate uptake protein YP_959451.1 PFAM: Phosphoglycerate mutase; KEGG: pol:Bpro_4901 phosphoglycerate mutase YP_959452.1 PFAM: protein of unknown function DUF188; KEGG: dar:Daro_2879 protein of unknown function DUF188 YP_959453.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: noc:Noc_0115 ABC transporter, transmembrane region YP_959454.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: stm:STM0192 ABC superfamily (atp_bind), hydroxymate-dependent iron transport YP_959455.1 PFAM: periplasmic binding protein; KEGG: vvy:VVA1505 ABC-type hydroxamate-dependent iron transport system, periplasmic component YP_959456.1 part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome YP_959458.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: hch:HCH_01398 outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid YP_959459.1 PFAM: glucose sorbosone dehydrogenase; KEGG: cyb:CYB_1374 glucose/sorbosone dehydrogenase family protein YP_959460.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: bpe:BP1512 hypothetical protein YP_959461.1 PFAM: Glutathione S-transferase, N-terminal domain; KEGG: aci:ACIAD1392 hypothetical protein YP_959462.1 KEGG: abo:ABO_1965 D-alanyl-D-alanine-carboxypeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13, D-Ala-D-Ala carboxypeptidase C YP_959463.1 PFAM: beta-Ig-H3/fasciclin; KEGG: cps:CPS_1375 putative adhesion lipoprotein YP_959464.1 KEGG: jan:Jann_0888 hypothetical protein YP_959465.1 KEGG: pfl:PFL_1561 lipoprotein, putative YP_959466.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sfr:Sfri_2071 short-chain dehydrogenase/reductase SDR YP_959467.1 PFAM: Phosphoglycerate mutase; KEGG: sfr:Sfri_2072 phosphoglycerate mutase YP_959468.1 PFAM: aminoglycoside phosphotransferase; KEGG: hch:HCH_06636 predicted aminoglycoside phosphotransferase YP_959469.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: mxa:MXAN_5896 oxidoreductase, short chain dehydrogenase/reductase family YP_959470.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: sdn:Sden_3360 transposase IS116/IS110/IS902 YP_959471.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: hch:HCH_06638 acyl-CoA dehydrogenase YP_959472.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sfr:Sfri_2073 transcriptional regulator, LysR family protein YP_959474.1 PFAM: EAL domain protein; KEGG: sdn:Sden_0914 EAL domain protein YP_959475.1 PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: aeh:Mlg_0489 3-isopropylmalate dehydrogenase YP_959476.1 PFAM: aminotransferase class-III; KEGG: aeh:Mlg_0491 acetylornithine transaminase YP_959477.1 KEGG: hch:HCH_06945 protein of unknown function (DUF1439) YP_959478.1 KEGG: abo:ABO_0448 hypothetical protein YP_959479.1 PFAM: aminotransferase, class V; aminotransferase, class I and II; KEGG: aeh:Mlg_0877 aminotransferase, class I and II YP_959480.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: aeh:Mlg_0876 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding YP_959481.1 PFAM: fatty acid desaturase; KEGG: mxa:MXAN_3463 fatty acid desaturase YP_959482.1 PFAM: Integrase, catalytic region; KEGG: aeh:Mlg_2334 integrase, catalytic region YP_959483.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: aeh:Mlg_1531 IstB domain protein ATP-binding protein YP_959484.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: hch:HCH_05073 response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain YP_959485.1 TIGRFAM: acetate--CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: hch:HCH_04804 acetate--CoA ligase YP_959486.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility family protein; Male sterility C-terminal domain; KEGG: hch:HCH_05075 putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzyme YP_959487.1 PFAM: Cobyrinic acid a,c-diamide synthase; SMART: AAA ATPase; KEGG: pfo:Pfl_1562 cobyrinic acid a,c-diamide synthase YP_959488.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; HDOD; KEGG: rfr:Rfer_2486 histidine kinase YP_959489.1 KEGG: mfa:Mfla_1183 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_959490.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: hch:HCH_05078 methylase involved in ubiquinone/menaquinone biosynthesis YP_959491.1 PFAM: protein of unknown function DUF470; KEGG: hch:HCH_05079 hypothetical protein YP_959492.1 KEGG: hch:HCH_05080 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu racemase YP_959493.1 PFAM: NUDIX hydrolase; KEGG: pau:PA14_40950 putative NADH pyrophosphatase YP_959494.1 PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA YP_959495.1 PFAM: protein of unknown function DUF548; KEGG: ppu:PP_1513 hypothetical protein YP_959497.1 PFAM: peptidase M22, glycoprotease; KEGG: ppu:PP_1507 hypothetical protein YP_959498.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_959499.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; HDOD; KEGG: hch:HCH_01812 predicted signal transduction protein YP_959500.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate YP_959501.1 KEGG: hch:HCH_01809 hypothetical protein YP_959502.1 KEGG: pfl:PFL_1146 hypothetical protein YP_959503.1 TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: hch:HCH_01808 predicted pyrophosphatase YP_959504.1 KEGG: hch:HCH_01807 GTP pyrophosphokinase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; RelA/SpoT domain protein YP_959505.1 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S] YP_959506.1 catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide YP_959507.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: hch:HCH_01804 signal transduction histidine kinase YP_959508.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) YP_959509.1 TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O, RecO; KEGG: nmu:Nmul_A1757 DNA repair protein RecO YP_959510.1 TIGRFAM: small GTP-binding protein; GTP-binding protein Era; PFAM: GTP-binding protein, HSR1-related; KH, type 2 domain protein; KEGG: pau:PA14_54320 GTP-binding protein Era YP_959511.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity YP_959512.1 KEGG: hch:HCH_01799 hypothetical protein YP_959513.1 KEGG: hch:HCH_01798 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B YP_959514.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_959515.1 KEGG: bxe:Bxe_A3034 putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS/PAC and CHASE sensors; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; CHASE domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein YP_959516.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: ppr:PBPRB1569 putative transcriptional regulator, LysR family YP_959517.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: shm:Shewmr7_2191 alcohol dehydrogenase, zinc-binding domain protein YP_959518.1 PFAM: putative esterase; KEGG: sfr:Sfri_3426 carboxylesterase YP_959519.1 KEGG: noc:Noc_0414 hypothetical protein YP_959520.1 PFAM: PilT protein domain protein; KEGG: noc:Noc_0413 PilT protein-like YP_959521.1 PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; SMART: AAA ATPase; KEGG: hch:HCH_06235 IstB helper protein, IS21 family YP_959522.1 PFAM: Integrase, catalytic region; KEGG: eba:ebA2485 transposase YP_959523.1 KEGG: dar:Daro_3432 hypothetical protein YP_959524.1 TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: hch:HCH_01795 serine protease MucD precursor YP_959525.1 PFAM: Positive regulator of sigma(E), RseC/MucC; KEGG: hch:HCH_01793 sigma factor AlgU negative regulatory protein MucC YP_959526.1 PFAM: MucB/RseB family protein; KEGG: hch:HCH_01792 sigma factor AlgU negative regulatory protein MucB YP_959527.1 PFAM: Anti sigma-E protein RseA family protein; KEGG: hch:HCH_01791 sigma factor AlgU negative regulatory protein MucA YP_959528.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: hch:HCH_01790 RNA polymerase sigma factor AlgU YP_959529.1 catalyzes the formation of oxaloacetate from L-aspartate YP_959530.1 PFAM: protein of unknown function DUF339; KEGG: pau:PA14_54470 hypothetical protein YP_959532.1 KEGG: psp:PSPPH_3959 glycine cleavage T-protein (aminomethyl transferase) YP_959533.1 PFAM: HDOD; KEGG: hch:HCH_01785 predicted signal transduction protein YP_959534.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine YP_959535.1 TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase, class II (D, K and N); nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: abo:ABO_1648 lysyl-tRNA synthetase YP_959536.1 TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: hch:HCH_01782 peptide chain release factor 2 YP_959537.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: ppu:PP_1477 single-stranded-DNA-specific exonuclease RecJ YP_959538.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_959539.1 PFAM: homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase, NAD-binding; KEGG: pau:PA14_16070 homoserine dehydrogenase YP_959540.1 KEGG: hch:HCH_01777 protein-disulfide isomerase YP_959541.1 TIGRFAM: tyrosine recombinase XerD; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: pfo:Pfl_1025 tyrosine recombinase XerD YP_959542.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_959543.1 KEGG: vvy:VV2786 tRNA-(guanine-N1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase YP_959544.1 Essential for efficient processing of 16S rRNA YP_959545.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_959546.1 PFAM: helix-turn-helix domain protein; KEGG: vpa:VPA1391 hypothetical protein YP_959547.1 KEGG: sfr:Sfri_3419 hypothetical protein YP_959548.1 PFAM: helicase domain protein; type III restriction enzyme, res subunit; SMART: DEAD-like helicases-like; KEGG: sfr:Sfri_3418 type III restriction enzyme, res subunit YP_959549.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: pol:Bpro_2236 phosphonate-binding periplasmic protein YP_959550.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvu:DVU1936 phosphonate ABC transporter, ATP-binding protein YP_959551.1 TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ssp:SSP1425 ABC-type phosphate phosphonate transport system permease component YP_959552.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: ana:all2221 phosphonate metabolism protein YP_959553.1 KEGG: tbd:Tbd_2296 putative phosphonate metabolism protein PhnG; K06166 PhnG protein YP_959554.1 PFAM: phosphonate metabolism; KEGG: tbd:Tbd_2295 putative PhnH protein, phosphonate metabolism, function unknown YP_959555.1 PFAM: phosphonate metabolism; KEGG: tbd:Tbd_2294 phosphonate metabolism protein YP_959556.1 PFAM: phosphonate metabolism PhnJ; KEGG: tbd:Tbd_2293 phosphonate metabolism protein PhnJ YP_959557.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tbd:Tbd_2292 ABC phosphonate transport system ATPase YP_959558.1 KEGG: tbd:Tbd_2291 ABC phosphonate transport system ATPase; TIGRFAM: phosphonate C-P lyase system protein PhnL; PFAM: ABC transporter related; SMART: AAA ATPase YP_959559.1 PFAM: major facilitator superfamily MFS_1; KEGG: rpd:RPD_4124 major facilitator superfamily MFS_1 YP_959560.1 TIGRFAM: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; SMART: guanylate kinase/L-type calcium channel region; KEGG: tbd:Tbd_2289 guanylate kinase/L-type calcium channel region YP_959561.1 required for the use of phosphonates and phosphite as phosphorus sources YP_959562.1 PFAM: heat shock protein DnaJ domain protein; KEGG: csa:Csal_0951 heat shock protein DnaJ-like protein YP_959563.1 KEGG: csa:Csal_0952 hypothetical protein YP_959567.1 KEGG: psp:PSPPH_B0057 resolvase, putative YP_959568.1 SMART: AAA ATPase; KEGG: pol:Bpro_1706 putative ATP-dependent exoDNAse (exonuclease V), alpha subunit YP_959569.1 KEGG: pol:Bpro_1707 hypothetical protein YP_959570.1 KEGG: pmu:PM1946 unknown YP_959571.1 KEGG: pmu:PM1947 unknown YP_959572.1 PFAM: phage integrase family protein; KEGG: xac:XAC2903 hypothetical protein YP_959573.1 PFAM: phage integrase family protein; KEGG: xac:XAC2904 integrase/recombinase YP_959574.1 KEGG: hch:HCH_01771 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54, G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase YP_959575.1 PFAM: cytochrome c assembly protein; KEGG: hch:HCH_01769 ABC-type uncharacterized transport system, permease component YP_959576.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: hch:HCH_01768 putative Mg2+ and Co2+ transporter CorB YP_959577.1 PFAM: protein of unknown function DUF1631; KEGG: hch:HCH_01766 hypothetical protein YP_959578.1 KEGG: cme:CMH001C similar to hedgehog protein Pfam: Kelch_2 Kelch_1 Hint PROSITE: INTEIN_N_TER PRO_RICH THR_RICH YP_959579.1 TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: hch:HCH_01764 glutaredoxin-related protein YP_959580.1 KEGG: hch:HCH_01762 ornithine carbamoyltransferase; TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YP_959581.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pau:PA14_18600 putative ABC transporter, ATP-binding protein YP_959582.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase, FGGY; KEGG: pae:PA3579 probable carbohydrate kinase YP_959583.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: hch:HCH_01758 signal transduction histidine kinase YP_959584.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: hch:HCH_01757 response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain YP_959585.1 KEGG: hch:HCH_01756 putative hemolysin YP_959586.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: hch:HCH_01754 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_959587.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: hch:HCH_01755 FKBP-type peptidyl-prolyl cis-trans isomerases 2 YP_959588.1 KEGG: hch:HCH_01753 acetyl-CoA hydrolase YP_959590.1 PFAM: aldo/keto reductase; KEGG: hch:HCH_01747 predicted oxidoreductase (related to aryl-alcohol dehydrogenase) YP_959591.1 PFAM: glycosyl transferase, group 1; KEGG: hch:HCH_01746 glycosyltransferase YP_959592.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: hch:HCH_01745 membrane-associated phospholipid phosphatase YP_959593.1 KEGG: hch:HCH_04158 hypothetical protein YP_959594.1 KEGG: hch:HCH_04159 hypothetical protein YP_959595.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: eba:ebA1024 DNA polymerase IV YP_959596.1 PFAM: protein of unknown function DUF1244; KEGG: pst:PSPTO_1180 hypothetical protein YP_959597.1 KEGG: sde:Sde_2897 hypothetical protein YP_959598.1 blocks the formation of polar Z-ring septums YP_959599.1 TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: hch:HCH_01743 septum site-determining protein MinD YP_959600.1 TIGRFAM: cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE; KEGG: hch:HCH_01742 cell division topological specificity factor MinE YP_959601.1 KEGG: hch:HCH_05040 hypothetical protein YP_959602.1 PFAM: lipid-binding START domain protein; KEGG: hch:HCH_01741 protein containing StAR-related lipid-transfer (START) domain YP_959603.1 PFAM: CBS domain containing protein; KEGG: hch:HCH_01740 FOG: CBS domain YP_959604.1 PFAM: PhoH family protein; SMART: Nucleotide binding protein, PINc; KEGG: hch:HCH_01737 predicted ATPase related to phosphate starvation-inducible protein PhoH YP_959605.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: ppu:PP_4508 transcriptional regulator, AraC family YP_959606.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: rfr:Rfer_3510 fumarate reductase/succinate dehydrogenase flavoprotein-like YP_959607.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: ccr:CC1151 L-lactate dehydrogenase YP_959608.1 thiamine-pyrophosphate requiring enzyme YP_959609.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: ilo:IL1880 methyl-accepting chemotaxis protein (contains HAMP domain) YP_959610.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: hch:HCH_00326 sigma 54-dependent transcriptional activator containing CheY-like receiver domain YP_959611.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: hch:HCH_00325 signal transduction histidine kinase regulating C4-dicarboxylate transport system YP_959612.1 TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: csa:Csal_2409 TRAP transporter, 4TM/12TM fusion protein YP_959613.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: csa:Csal_2408 TRAP transporter solute receptor, TAXI family YP_959614.1 PFAM: protein of unknown function UPF0047; KEGG: abo:ABO_2390 hypothetical protein YP_959615.1 PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: csa:Csal_1199 succinylglutamate desuccinylase/aspartoacylase YP_959616.1 TIGRFAM: alpha-L-glutamate ligases, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: vfi:VF0658 ribosomal protein S6 modification protein YP_959617.1 PFAM: protein of unknown function DUF785; KEGG: hch:HCH_01738 hypothetical protein YP_959618.1 PFAM: MscS Mechanosensitive ion channel; KEGG: aeh:Mlg_2381 MscS mechanosensitive ion channel YP_959619.1 KEGG: sru:SRU_0809 hypothetical protein YP_959620.1 PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein; KEGG: hch:HCH_01735 deoxyribodipyrimidine photolyase YP_959621.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: pfo:Pfl_4746 UBA/ThiF-type NAD/FAD binding fold YP_959622.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; Methyltransferase type 11; KEGG: pfl:PFL_5158 HemK protein YP_959623.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_959624.1 PFAM: glutamyl-tRNA reductase; Shikimate/quinate 5-dehydrogenase; KEGG: pau:PA14_61710 glutamyl-tRNA reductase YP_959625.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: hch:HCH_01729 FOG: TPR repeat YP_959626.1 PFAM: outer membrane lipoprotein LolB; KEGG: pfl:PFL_5162 outer membrane lipoprotein LolB YP_959627.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis YP_959628.1 KEGG: hch:HCH_01726 phosphoribosylpyrophosphate synthetase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase YP_959629.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_959630.1 PFAM: peptidyl-tRNA hydrolase; KEGG: csa:Csal_1522 aminoacyl-tRNA hydrolase YP_959631.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_959632.1 KEGG: sit:TM1040_1048 ABC-type amino acid transport/signal transduction system YP_959634.1 PFAM: beta-lactamase; KEGG: reu:Reut_B4649 beta-lactamase YP_959635.1 KEGG: noc:Noc_2714 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase YP_959636.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_959637.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: pau:PA14_27000 putative methyl-accepting chemotaxis protein YP_959638.1 KEGG: abo:ABO_1535 transport protein, putative YP_959639.1 KEGG: syf:Synpcc7942_1800 hypothetical protein YP_959640.1 essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc) YP_959641.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: hch:HCH_01717 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase YP_959642.1 PFAM: dTDP-4-dehydrorhamnose reductase; KEGG: hch:HCH_01716 dTDP-4-dehydrorhamnose reductase-like protein YP_959644.1 KEGG: hch:HCH_01715 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein YP_959645.1 unwinds double stranded DNA YP_959646.1 PFAM: ribosomal protein L9; KEGG: hch:HCH_01713 ribosomal protein L9 YP_959647.1 KEGG: pau:PA14_65160 hypothetical protein YP_959648.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_959649.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_959650.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; KEGG: pae:PA4936 probable rRNA methylase YP_959651.1 KEGG: hch:HCH_01709 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B, OB region N-terminal domain; Ribonuclease R winged-helix domain protein; SMART: Cold shock protein YP_959652.1 TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: noc:Noc_2903 type I restriction-modification system M subunit YP_959653.1 PFAM: transposase, IS4 family protein; KEGG: sme:SMc03260 putative transposase for insertion sequence ISRM17 YP_959654.1 PFAM: restriction modification system DNA specificity domain; KEGG: mja:MJ1218 type I restriction-modification enzyme, S subunit, putative YP_959655.1 KEGG: noc:Noc_2909 type I site-specific deoxyribonuclease HsdR; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases-like YP_959656.1 PFAM: protein of unknown function DUF45; KEGG: noc:Noc_2910 protein of unknown function DUF45 YP_959657.1 KEGG: eli:ELI_14760 hypothetical protein YP_959659.1 PFAM: Integrase, catalytic region; KEGG: eba:ebA2485 transposase YP_959660.1 PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; SMART: AAA ATPase; KEGG: hch:HCH_06235 IstB helper protein, IS21 family YP_959661.1 KEGG: hch:HCH_00059 hypothetical protein YP_959662.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: hch:HCH_05789 acyl-CoA dehydrogenase YP_959663.1 TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: csa:Csal_1536 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_959664.1 TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: psp:PSPPH_4665 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase YP_959665.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis YP_959666.1 functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase YP_959667.1 KEGG: tcx:Tcr_0229 hypothetical protein YP_959668.1 PFAM: ABC-1 domain protein; KEGG: hch:HCH_05835 predicted unusual protein kinase YP_959669.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: hch:HCH_00786 response regulator containing a CheY-like receiver domain and a GGDEF domain YP_959670.1 TIGRFAM: lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; KEGG: pau:PA14_12120 lipoate-protein ligase B YP_959671.1 PFAM: protein of unknown function DUF493; KEGG: csa:Csal_1550 protein of unknown function DUF493 YP_959672.1 PFAM: beta-lactamase; peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: hch:HCH_05839 D-alanyl-D-alanine carboxypeptidase YP_959673.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; KEGG: hch:HCH_05840 lipoprotein YP_959674.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: hch:HCH_05842 rod shape-determining protein RodA YP_959675.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: hch:HCH_05843 cell division protein FtsI/penicillin-binding protein 2 YP_959676.1 PFAM: protein of unknown function DUF163; KEGG: yps:YPTB1098 hypothetical protein YP_959677.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: hch:HCH_05845 uncharacterized plant iojap protein YP_959678.1 KEGG: csa:Csal_1542 putative nicotinate-nucleotide adenylyltransferase; TIGRFAM: cytidyltransferase-related domain; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase YP_959679.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_959680.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: hch:HCH_05848 FOG: GGDEF domain YP_959681.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: hch:HCH_05849 response regulator containing a CheY-like receiver domain and a GGDEF domain YP_959682.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: hch:HCH_05850 uncharacterized membrane-associated protein YP_959683.1 PFAM: peptidase S16, lon domain protein; KEGG: hch:HCH_05851 hypothetical protein YP_959684.1 PFAM: cyclic nucleotide-binding; metal-dependent phosphohydrolase, HD sub domain; HDOD; KEGG: hch:HCH_05853 predicted signal transduction protein YP_959685.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_959686.1 PFAM: Peptidoglycan-binding domain 1 protein YP_959687.1 PFAM: protein of unknown function UPF0118; KEGG: abo:ABO_2628 hypothetical protein YP_959688.1 KEGG: hch:HCH_01470 hypothetical protein YP_959690.1 PFAM: alpha/beta hydrolase fold; KEGG: abo:ABO_2415 haloallkane dehalogenase YP_959691.1 KEGG: pfo:Pfl_4024 acyl-CoA thioesterase II, putative YP_959692.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: dar:Daro_1118 helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal YP_959693.1 PFAM: dihydrofolate reductase region; KEGG: abo:ABO_2343 dihydrofolate reductase YP_959694.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived YP_959695.1 PFAM: prolipoprotein diacylglyceryl transferase; KEGG: hch:HCH_05858 prolipoprotein diacylglyceryl transferase YP_959696.1 PFAM: protein of unknown function DUF81; KEGG: hch:HCH_05859 predicted permease YP_959697.1 PFAM: protein of unknown function DUF833; KEGG: hch:HCH_05861 hypothetical protein YP_959698.1 TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit; KEGG: hch:HCH_05864 exodeoxyribonuclease VII, small subunit YP_959699.1 PFAM: Polyprenyl synthetase; KEGG: ppu:PP_0528 geranyltranstransferase YP_959700.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_959701.1 catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate YP_959702.1 TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: hch:HCH_05870 molybdenum cofactor biosynthesis protein C YP_959703.1 TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; thiamine monophosphate synthase; KEGG: pfl:PFL_4779 mutator MutT protein, putative YP_959704.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate YP_959705.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_959706.1 PFAM: peptidase M23B; KEGG: hch:HCH_05874 membrane protein related to metalloendopeptidase YP_959707.1 KEGG: hch:HCH_05875 hypothetical protein YP_959708.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_959709.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_959710.1 PFAM: cell division protein FtsA; KEGG: hch:HCH_05879 cell division protein FtsA YP_959711.1 PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein, FtsQ-type; KEGG: ppu:PP_1340 cell division protein FtsQ YP_959712.1 TIGRFAM: D-alanine--D-alanine ligase; PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201; D-alanine--D-alanine ligase domain protein; KEGG: pfl:PFL_5059 D-alanylalanine synthetase YP_959713.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_959714.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_959715.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: hch:HCH_05884 bacterial cell division membrane protein YP_959716.1 TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: pfl:PFL_5063 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_959717.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_959718.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: pfo:Pfl_4677 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D -alanyl ligase YP_959719.1 TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: pae:PA4417 UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase YP_959720.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: hch:HCH_05889 penicillin-binding protein 2 YP_959721.1 PFAM: cell division protein FtsL; KEGG: aeh:Mlg_2200 cell division protein FtsL YP_959722.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: sde:Sde_0840 S-adenosyl-methyltransferase MraW YP_959723.1 TIGRFAM: MraZ protein; PFAM: protein of unknown function UPF0040; KEGG: sde:Sde_0839 MraZ protein YP_959724.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: hch:HCH_05893 predicted methyltransferase YP_959725.1 PFAM: LppC family lipoprotein; KEGG: hch:HCH_05894 putative lipoprotein YP_959726.1 PFAM: protein of unknown function UPF0102; KEGG: csa:Csal_2201 protein of unknown function UPF0102 YP_959727.1 KEGG: pfo:Pfl_4686 phosphoheptose isomerase YP_959728.1 PFAM: Stringent starvation protein B; KEGG: hch:HCH_10003 stringent starvation protein B YP_959729.1 PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: hch:HCH_05897 glutathione S-transferase YP_959730.1 PFAM: cytochrome c1; KEGG: hch:HCH_05898 cytochrome c1 YP_959731.1 PFAM: Cytochrome b/b6, N-terminal domain; Cytochrome b/b6, C-terminal domain; KEGG: hch:HCH_05899 cytochrome b subunit of the bc complex YP_959732.1 KEGG: pau:PA14_57570 putative cytochrome c reductase, iron-sulfur subun; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein YP_959733.1 PFAM: ribosomal protein S9; KEGG: pfl:PFL_5081 ribosomal protein S9 YP_959734.2 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_959735.1 PFAM: TatD-related deoxyribonuclease; KEGG: stt:t4607 putative deoxyribonuclease YP_959736.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein YP_959737.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: xcv:XCV3688 putative acetyltransferase YP_959738.1 KEGG: csa:Csal_2993 hypothetical protein YP_959739.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis YP_959740.1 KEGG: ppu:PP_1457 phosphoribosylglycinamide formyltransferase 2; TIGRFAM: phosphoribosylglycinamide formyltransferase 2; PFAM: ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp YP_959741.1 PFAM: protein of unknown function DUF1289; KEGG: hch:HCH_02198 predicted Fe-S protein YP_959742.1 KEGG: pau:PA14_15870 putative acetyltransferase YP_959743.1 PFAM: NUDIX hydrolase; KEGG: pfl:PFL_1085 hydrolase, NUDIX family YP_959744.1 PFAM: NUDIX hydrolase; KEGG: bte:BTH_I2508 pyrophosphatase, MutT/NUDIX family YP_959745.1 KEGG: sde:Sde_1197 hypothetical protein YP_959746.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_959747.1 PFAM: Lytic transglycosylase, catalytic; SMART: extracellular solute-binding protein, family 3; KEGG: hch:HCH_02190 predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein YP_959748.1 PFAM: regulatory protein RecX; KEGG: noc:Noc_0925 regulatory protein RecX YP_959749.1 KEGG: hch:HCH_02188 hypothetical protein YP_959750.1 KEGG: hch:HCH_02187 hypothetical protein YP_959751.1 KEGG: pau:PA14_42090 putative acyl-CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein YP_959752.1 PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: hch:HCH_02185 3-hydroxyacyl-CoA dehydrogenase YP_959753.1 KEGG: hch:HCH_02184 periplasmic protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41 YP_959754.1 KEGG: hch:HCH_02183 hypothetical protein YP_959755.1 KEGG: pau:PA14_23250 putative initiation factor 2 subunit; TIGRFAM: eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: initiation factor 2B related YP_959756.1 Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline YP_959757.1 Involved in ubiquinone biosynthesis YP_959758.1 KEGG: hch:HCH_04358 predicted phosphatase; TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase YP_959759.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: pau:PA14_23200 putative oxidoreductase, short-chain dehydrogenase/reductase family YP_959760.1 PFAM: glutaredoxin 2; KEGG: pen:PSEEN3761 hypothetical protein YP_959761.1 PFAM: protein of unknown function DUF328; KEGG: eca:ECA3888 hypothetical protein YP_959762.1 KEGG: pen:PSEEN4797 hypothetical protein YP_959763.1 Required for efficient pilin antigenic variation YP_959764.1 PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: hch:HCH_04815 acyl-CoA synthetase (NDP forming) YP_959765.1 PFAM: histone deacetylase superfamily; KEGG: hch:HCH_04816 deacetylases, including yeast histone deacetylase and acetoin utilization protein YP_959766.1 PFAM: OmpA/MotB domain protein; KEGG: hch:HCH_04990 outer membrane protein and related peptidoglycan-associated (LipO)protein YP_959767.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis YP_959768.1 Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A) YP_959769.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; KR; KEGG: hch:HCH_04995 short-chain alcohol dehydrogenase-like protein YP_959770.1 KEGG: hch:HCH_04999 hypothetical protein YP_959771.1 PFAM: peptidase M16 domain protein; KEGG: hch:HCH_05001 secreted/periplasmic Zn-dependent peptidase, insulinase-like YP_959773.1 PFAM: permease; KEGG: ilo:IL2591 uncharacterized conserved membrane protein, probable transporter YP_959774.1 PFAM: Glutathione S-transferase, N-terminal domain; KEGG: pat:Patl_0620 glutathione S-transferase-like YP_959775.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: pen:PSEEN1697 oxidoreductase, short chain dehydrogenase/reductase family YP_959776.1 KEGG: tcx:Tcr_1008 hypothetical protein YP_959777.1 KEGG: tbd:Tbd_2249 hypothetical protein YP_959779.1 KEGG: noc:Noc_1609 multisensor diguanylate cyclase/phophodiesterase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_959780.1 KEGG: ppr:PBPRA2539 hypothetical protein YP_959781.1 KEGG: ppr:PBPRA2540 hypothetical protein YP_959782.1 KEGG: ppr:PBPRA2541 hypothetical protein YP_959783.1 KEGG: ppr:PBPRA2542 hypothetical protein YP_959784.1 KEGG: syf:Synpcc7942_1212 hypothetical protein YP_959785.1 KEGG: plu:plu1887 hypothetical protein YP_959786.1 PFAM: beta-lactamase domain protein; KEGG: eba:ebA2717 putative metallo-beta-lactamase family protein YP_959787.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: sdn:Sden_1963 chemotaxis sensory transducer YP_959788.1 KEGG: hch:HCH_05003 hypothetical protein YP_959789.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain; KEGG: hch:HCH_05004 putative translation factor (SUA5) YP_959790.1 PFAM: BolA family protein; KEGG: csa:Csal_2994 BolA-like protein YP_959791.1 KEGG: ypn:YPN_1631 DNA topoisomerase III; TIGRFAM: DNA topoisomerase III; PFAM: TOPRIM domain protein; DNA topoisomerase, type IA, central domain protein; DNA topoisomerase, type IA, zn finger domain protein; SMART: DNA topoisomerase I, ATP-binding; DNA topoisomerase I, DNA-binding; Toprim sub domain protein YP_959792.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: hch:HCH_05008 response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain YP_959793.1 PFAM: Peptidoglycan-binding LysM; KEGG: hch:HCH_05009 protein containing LysM domain YP_959794.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; CHASE2 domain protein; PAS fold-4 domain protein; KEGG: hch:HCH_05010 signal transduction histidine kinase YP_959796.1 PFAM: ribonuclease HII/HIII; KEGG: stm:STM0230 RNAse HII YP_959797.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM YP_959798.1 KEGG: hch:HCH_05239 acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam ine O-acyltransferase; TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; PFAM: transferase hexapeptide repeat containing protein YP_959799.1 TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; KEGG: hch:HCH_05240 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ YP_959800.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis YP_959801.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: hch:HCH_05242 outer membrane protein YP_959802.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: hch:HCH_05243 outer membrane protein/protective antigen OMA87 YP_959803.1 TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: csa:Csal_0570 peptidase M50, putative membrane-associated zinc metallopeptidase YP_959804.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_959805.1 PFAM: phosphatidate cytidylyltransferase; KEGG: pfo:Pfl_1106 phosphatidate cytidylyltransferase YP_959806.1 KEGG: hch:HCH_05248 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase YP_959807.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_959808.1 Catalyzes the phosphorylation of UMP to UDP YP_959809.1 TIGRFAM: translation elongation factor Ts; PFAM: ubiquitin-associated- domain-containing protein; elongation factor Ts; KEGG: hch:HCH_05252 translation elongation factor Ts YP_959810.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_959811.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: hch:HCH_05254 methionine aminopeptidase, type I YP_959812.1 Catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein YP_959813.1 PFAM: aminotransferase, class I and II; KEGG: pae:PA3659 N-succinyldiaminopimelate aminotransferase YP_959814.1 PFAM: arsenate reductase and related; KEGG: sal:Sala_2210 hypothetical protein YP_959815.1 KEGG: psp:PSPPH_3846 tetrahydrodipicolinate succinylase, putative YP_959816.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica. YP_959817.1 PFAM: SlyX family protein; KEGG: sfx:S4396 host factor for lysis of phiX174 infection YP_959818.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: hch:HCH_05263 cold shock protein YP_959819.1 KEGG: pau:PA14_49400 hypothetical protein YP_959821.1 KEGG: psb:Psyr_1683 hypothetical protein YP_959822.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: csa:Csal_0685 glyoxalase/bleomycin resistance protein/dioxygenase YP_959823.1 KEGG: pae:PA5264 hypothetical protein YP_959825.1 TIGRFAM: YD repeat protein; PFAM: RHS protein; YD repeat-containing protein; KEGG: pau:PA14_43100 putative rhs family protein YP_959826.1 KEGG: pst:PSPTO_5437 hypothetical protein YP_959827.1 PFAM: Rhs element Vgr protein; KEGG: eca:ECA2104 VgrG protein YP_959828.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: sde:Sde_3210 sucrose phosphorylase YP_959829.1 KEGG: hch:HCH_00270 glycosyltransferase involved in cell wall biogenesis YP_959830.1 KEGG: hch:HCH_00271 predicted hydrolase (HAD superfamily); TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; mannosyl-3-phosphoglycerate phosphatase family; PFAM: Haloacid dehalogenase domain protein hydrolase, type 3 YP_959831.1 PFAM: protein of unknown function UPF0061; KEGG: mxa:MXAN_0863 hypothetical protein YP_959832.1 TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: pau:PA14_43100 putative rhs family protein YP_959833.1 KEGG: pst:PSPTO_5437 hypothetical protein YP_959834.1 PFAM: Rhs element Vgr protein; KEGG: eca:ECA2104 VgrG protein YP_959835.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: sde:Sde_3210 sucrose phosphorylase YP_959836.1 KEGG: hch:HCH_00270 glycosyltransferase involved in cell wall biogenesis YP_959837.1 KEGG: hch:HCH_00271 predicted hydrolase (HAD superfamily); TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; mannosyl-3-phosphoglycerate phosphatase family; PFAM: Haloacid dehalogenase domain protein hydrolase, type 3 YP_959838.1 PFAM: protein of unknown function UPF0061; KEGG: mxa:MXAN_0863 hypothetical protein YP_959839.1 TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: pau:PA14_43100 putative rhs family protein YP_959840.1 KEGG: pst:PSPTO_5437 hypothetical protein YP_959841.1 PFAM: Rhs element Vgr protein; KEGG: eca:ECA2104 VgrG protein YP_959842.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: sde:Sde_3210 sucrose phosphorylase YP_959843.1 KEGG: hch:HCH_00270 glycosyltransferase involved in cell wall biogenesis YP_959844.1 KEGG: hch:HCH_00271 predicted hydrolase (HAD superfamily); TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; mannosyl-3-phosphoglycerate phosphatase family; PFAM: Haloacid dehalogenase domain protein hydrolase, type 3 YP_959845.1 PFAM: protein of unknown function UPF0061; KEGG: mxa:MXAN_0863 hypothetical protein YP_959846.1 PFAM: major facilitator superfamily MFS_1; KEGG: csa:Csal_2143 major facilitator superfamily MFS_1 YP_959847.1 putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription YP_959848.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: hch:HCH_04621 response regulator containing a CheY-like receiver domain and a GGDEF domain YP_959849.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: hch:HCH_04627 AraC-type DNA-binding domain-containing protein YP_959850.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_959851.1 PFAM: flagellar protein FliS; KEGG: hch:HCH_04817 flagellar protein FliS YP_959852.1 PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: hch:HCH_04818 flagellar capping protein YP_959853.1 PFAM: flagellar protein FlaG protein; KEGG: hch:HCH_04819 uncharacterized flagellar protein FlaG YP_959854.1 PFAM: flagellin domain protein; flagellin hook IN repeat protein; KEGG: noc:Noc_2367 flagellin YP_959855.1 PFAM: glycosyl transferase, family 2; KEGG: xcb:XC_2258 O-antigen biosynthesis protein YP_959856.1 KEGG: vvu:VV12891 hypothetical protein YP_959857.1 KEGG: bth:BT3374 putative carbamoyl-phosphate-synthetase YP_959858.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: fth:FTH_0601 ECA biosynthesis protein YP_959859.1 PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; KEGG: abo:ABO_0914 dTDP-4-dehydrorhamnose 3,5-epimerase YP_959861.1 PFAM: flagellin domain protein; flagellin hook IN repeat protein; KEGG: net:Neut_1824 flagellin domain protein YP_959862.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: hch:HCH_04823 FOG: TPR repeat YP_959863.1 PFAM: SNF2-related protein; helicase domain protein; zinc finger, SWIM domain protein; SMART: DEAD-like helicases-like; KEGG: hch:HCH_06999 superfamily II DNA/RNA helicase, SNF2 family YP_959864.1 Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates YP_959865.1 KEGG: ilo:IL2507 hypothetical protein YP_959866.1 KEGG: ilo:IL2508 hypothetical protein YP_959867.1 KEGG: pau:PA14_61940 hypothetical protein YP_959868.1 PFAM: response regulator receiver; KEGG: hch:HCH_01662 chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain YP_959869.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; KEGG: sde:Sde_0392 response regulator receiver domain protein (CheY-like) YP_959870.1 KEGG: csa:Csal_1652 transcriptional regulator MvaT, P16 subunit YP_959871.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: net:Neut_0226 UDP-glucose/GDP-mannose dehydrogenase YP_959872.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: eba:ebA5857 putative metallo-beta-lactamase family protein YP_959873.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility C-terminal domain; KEGG: cps:CPS_0594 polysaccharide biosynthesis protein YP_959874.1 PFAM: sugar transferase; KEGG: ilo:IL0563 sugar transferase YP_959875.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: pol:Bpro_3986 NAD-dependent epimerase/dehydratase YP_959876.1 PFAM: glycosyl transferase, group 1; KEGG: bbr:BB0883 putative glycosyltransferase YP_959877.1 PFAM: glycosyl transferase, group 1; KEGG: pat:Patl_4007 glycosyl transferase, group 1 YP_959879.1 PFAM: glycosyl transferase, family 2; KEGG: pat:Patl_3065 glycosyl transferase, family 2 YP_959880.1 KEGG: dps:DPPB78 hypothetical protein YP_959881.1 PFAM: coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; KEGG: sme:SMb20252 hypothetical protein YP_959882.1 PFAM: polysaccharide biosynthesis protein; KEGG: mlo:mll5270 probable succinoglycan transport protein YP_959883.1 PFAM: Citrate transporter; TrkA-C domain protein; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: csa:Csal_1684 TrkA-like protein YP_959884.1 converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis YP_959885.1 KEGG: sde:Sde_2143 sulfate adenylyltransferase; TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein YP_959886.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_959887.1 PFAM: phosphoesterase, DHHA1; KEGG: tbd:Tbd_0209 hypothetical protein YP_959888.1 KEGG: ter:Tery_4433 hypothetical protein YP_959889.1 PFAM: glycosyl transferase, family 2; KEGG: rru:Rru_B0044 glycosyl transferase, family 2 YP_959890.1 KEGG: bxe:Bxe_A3800 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related YP_959891.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: cvi:CV4012 glucose-1-phosphate thymidylyltransferase YP_959892.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: cvi:CV4011 dTDP-4-dehydrorhamnose reductase YP_959893.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: eba:ebA2278 putative dTDP-D-glucose 4, 6-dehydratase YP_959894.1 KEGG: hch:HCH_02411 predicted glycosyltransferase YP_959895.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ana:all0916 putative ABC-2 type transport system ATP-binding protein YP_959896.1 PFAM: ABC-2 type transporter; KEGG: bha:BH3660 teichoic acid transport system permease protein YP_959897.1 PFAM: glycosyl transferase, family 2; KEGG: sye:Syncc9902_0124 hypothetical protein YP_959898.1 KEGG: sye:Syncc9902_0125 hypothetical protein YP_959899.1 KEGG: pat:Patl_3225 hypothetical protein YP_959900.1 PFAM: Methyltransferase type 12; KEGG: cps:CPS_2928 hypothetical protein YP_959901.1 PFAM: type II and III secretion system protein; NolW domain protein; KEGG: pat:Patl_3236 type II and III secretion system protein YP_959904.1 KEGG: pau:PA14_29560 hypothetical protein YP_959906.1 KEGG: pau:PA14_29540 putative type II secretion system protein YP_959907.1 KEGG: pau:PA14_29520 type II secretion system protein YP_959908.1 TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: pau:PA14_29510 putative type II secretion system protein YP_959909.1 PFAM: type II secretion system protein; KEGG: pau:PA14_29500 putative type II secretion system protein YP_959910.1 PFAM: type II secretion system protein E; SMART: AAA ATPase; KEGG: pau:PA14_29490 putative type II secretion protein YP_959911.1 PFAM: Fibronectin, type III domain protein; KEGG: sde:Sde_3542 general secretion pathway protein I YP_959912.1 KEGG: cps:CPS_0108 hypothetical protein YP_959913.1 TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: ilo:IL0573 3'-phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase YP_959914.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: hch:HCH_01515 predicted exonuclease of the beta-lactamase fold involved in RNA processing YP_959915.1 PFAM: superoxide dismutase, copper/zinc binding; KEGG: csa:Csal_0397 superoxide dismutase, copper/zinc binding YP_959916.1 TIGRFAM: nucleotidyltransferase substrate binding protein, HI0074 family; KEGG: net:Neut_0172 nucleotidyltransferase substrate binding protein, HI0074 family protein YP_959917.1 PFAM: DNA polymerase, beta domain protein region; KEGG: lpf:lpl2848 hypothetical protein YP_959918.1 PFAM: cytochrome c, class I; KEGG: dar:Daro_3327 cytochrome c, class I YP_959919.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: plu:plu0253 hypothetical protein YP_959921.1 KEGG: ppu:PP_0646 hypothetical protein YP_959922.1 PFAM: Integrase, catalytic region; KEGG: hch:HCH_06236 transposase, IS21 family YP_959923.1 PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; SMART: AAA ATPase; KEGG: hch:HCH_06235 IstB helper protein, IS21 family YP_959924.1 PFAM: PAAR repeat-containing protein; KEGG: ppu:PP_0646 hypothetical protein YP_959925.1 KEGG: sal:Sala_3183 putative CcdB-like protein YP_959926.1 KEGG: sme:SMc00348 hypothetical protein YP_959927.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: chu:CHU_3800 alkylated DNA repair protein YP_959928.1 KEGG: pca:Pcar_1786 transcriptional regulator, XRE family YP_959929.1 KEGG: ppu:PP_3900 HicA protein YP_959930.1 PFAM: HicB family protein; KEGG: ppu:PP_3899 HicB protein YP_959931.1 KEGG: bbr:BB1688 hypothetical protein YP_959932.1 KEGG: psp:PSPPH_B0005 transcriptional regulator, Cro/CI family YP_959933.1 PFAM: protein of unknown function DUF891; KEGG: psp:PSPPH_B0006 hypothetical protein YP_959934.1 SMART: helix-turn-helix domain protein; KEGG: ypn:YPN_PCP0006 transcriptional regulator YP_959935.1 KEGG: plu:plu0441 hypothetical protein YP_959936.1 KEGG: eba:ebA1554 hypothetical transposase YP_959937.1 KEGG: rco:RC0477 hypothetical protein YP_959938.1 KEGG: cch:Cag_0520 hypothetical protein YP_959939.1 PFAM: helix-turn-helix domain protein; KEGG: ana:all1719 putative transcriptional regulator YP_959940.1 KEGG: ilo:IL0301 hypothetical protein YP_959941.1 PFAM: protein of unknown function DUF1568; KEGG: eba:ebA1554 hypothetical transposase YP_959942.1 PFAM: Fimbrial protein pilin; KEGG: lpn:lpg1915 Tfp pilus assembly protein, major type IV pilin class A YP_959943.1 TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: hch:HCH_05278 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB YP_959944.1 PFAM: type II secretion system protein; KEGG: hch:HCH_05279 type II secretory pathway, component PulF YP_959945.1 PFAM: peptidase A24A, prepilin type IV; peptidase A24A domain protein; KEGG: dar:Daro_0637 peptidase A24A, prepilin type IV:peptidase A24A, N-terminal YP_959946.1 KEGG: ilo:IL0449 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase YP_959947.1 KEGG: hch:HCH_05283 hypothetical protein YP_959948.1 PFAM: protein of unknown function UPF0066; KEGG: plu:plu0693 hypothetical protein YP_959949.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: hch:HCH_05286 signal transduction histidine kinase YP_959950.1 PFAM: protein of unknown function DUF329; KEGG: plu:plu3643 zinc-binding protein YP_959951.1 PFAM: YfaZ family protein; KEGG: hch:HCH_05290 hypothetical protein YP_959952.1 KEGG: hch:HCH_05291 hypothetical protein YP_959953.1 KEGG: ppr:PBPRA1850 hypothetical bax protein YP_959954.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: hch:HCH_05295 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_959955.1 PFAM: regulatory protein, LuxR; Tetratricopeptide TPR_4; KEGG: pfo:Pfl_4706 ATP-dependent transcriptional regulator, MalT related, LuxR family YP_959956.1 PFAM: protein of unknown function DUF1329; KEGG: pau:PA14_13140 hypothetical protein YP_959957.1 PFAM: protein of unknown function DUF1302; KEGG: hch:HCH_05297 ABC-type dipeptide transport system, periplasmic component YP_959958.1 KEGG: abo:ABO_0648 acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase YP_959959.1 PFAM: AFG1-family ATPase; KEGG: hch:HCH_05300 predicted ATPase YP_959960.1 PFAM: protein of unknown function DUF1043; KEGG: hch:HCH_05301 hypothetical protein YP_959961.1 PFAM: protein of unknown function DUF34; KEGG: abo:ABO_0566 hypothetical protein YP_959962.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_959963.1 PFAM: histidinol dehydrogenase; KEGG: pfl:PFL_0929 histidinol dehydrogenase YP_959964.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ YP_959965.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_959966.1 KEGG: sde:Sde_3171 toluene-tolerance protein, putative YP_959968.1 PFAM: toluene tolerance family protein; KEGG: hch:HCH_05311 ABC-type transport system involved in resistance to organic solvents, auxiliary component YP_959969.1 PFAM: Mammalian cell entry related domain protein; KEGG: hch:HCH_05312 ABC-type transport system involved in resistance to organic solvents, periplasmic component YP_959970.1 PFAM: protein of unknown function DUF140; KEGG: hch:HCH_05313 ABC-type transport system involved in resistance to organic solvents, permease component YP_959971.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hch:HCH_05314 ABC-type transport system involved in resistance to organic solvents, ATPase component YP_959972.1 KEGG: ppu:PP_0957 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS) YP_959973.1 TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: hch:HCH_05316 low specificity phosphatase (HAD superfamily) YP_959974.1 PFAM: protein of unknown function DUF1239; KEGG: hch:HCH_05317 hypothetical protein YP_959975.1 PFAM: OstA family protein; KEGG: pau:PA14_57920 hypothetical protein YP_959976.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vpa:VP2669 ABC transporter, ATP-binding protein YP_959977.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen YP_959978.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: hch:HCH_05322 ribosome-associated protein Y (PSrp-1) YP_959979.1 TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: hch:HCH_05323 PTS IIA-like nitrogen-regulatory protein PtsN YP_959980.1 PFAM: Uncharacterised P-loop ATPase protein UPF0042; KEGG: hch:HCH_05324 predicted P-loop-containing kinase YP_959981.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: hch:HCH_05325 phosphocarrier protein HPr YP_959982.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: hch:HCH_05326 magnesium transporter YP_959983.1 PFAM: protein of unknown function DUF615; KEGG: hch:HCH_05327 hypothetical protein YP_959984.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: hch:HCH_05328 predicted amidohydrolase YP_959985.1 KEGG: hch:HCH_05329 predicted membrane protein YP_959986.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: hch:HCH_05330 ribonucleases G and E YP_959987.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: ssn:SSO_3389 hypothetical protein YP_959988.1 PFAM: Rod shape-determining protein MreD; KEGG: csa:Csal_2238 rod shape-determining protein MreD YP_959989.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_959990.1 functions in MreBCD complex in some organisms YP_959991.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase, C subunit; KEGG: hch:HCH_05336 glutamyl-tRNA(Gln) amidotransferase, C subunit YP_959992.1 KEGG: noc:Noc_2636 glutamyl-tRNA(Gln) amidotransferase A subunit; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A subunit; PFAM: Amidase YP_959993.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_959994.1 KEGG: pau:PA14_52420 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme YliG; PFAM: deoxyribonuclease/rho motif-related TRAM; Radical SAM domain protein; Protein of unknown function UPF0004-like; SMART: Elongator protein 3/MiaB/NifB YP_959995.1 PFAM: type IV pilus assembly PilZ; KEGG: hch:HCH_05341 hypothetical protein YP_959996.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_959997.1 KEGG: hch:HCH_05344 GTPase - sulfate adenylate transferase subunit 1; TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein YP_959998.1 PFAM: 37kDa nucleoid-associated protein; KEGG: hch:HCH_05346 nucleoid-associated protein YP_959999.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: sde:Sde_2003 tRNA (guanosine-2'-O-)-methyltransferase YP_960000.1 KEGG: abo:ABO_1934 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; tRNA-i(6)A37 thiotransferase enzyme MiaB; PFAM: deoxyribonuclease/rho motif-related TRAM; Radical SAM domain protein; Protein of unknown function UPF0004-like; SMART: Elongator protein 3/MiaB/NifB YP_960001.1 PFAM: PhoH family protein; KEGG: hch:HCH_05349 phosphate starvation-inducible protein PhoH, predicted ATPase YP_960002.1 PFAM: protein of unknown function UPF0054; KEGG: hch:HCH_05350 predicted metal-dependent hydrolase YP_960003.1 PFAM: CBS domain containing protein; transporter-associated region; KEGG: hch:HCH_05351 putative Mg2+ and Co2+ transporter CorC YP_960004.1 TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: psb:Psyr_4349 apolipoprotein N-acyltransferase YP_960005.1 KEGG: hch:HCH_05353 predicted metalloendopeptidase YP_960006.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_960007.1 PFAM: Rare lipoprotein B; KEGG: hch:HCH_05356 rare lipoprotein B YP_960008.1 KEGG: pen:PSEEN4815 DNA polymerase III, delta subunit, probably ATP hydrolase; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta YP_960009.1 KEGG: hch:HCH_05358 hypothetical protein YP_960010.1 PFAM: Endonuclease I; KEGG: hch:HCH_05359 endonuclease I YP_960011.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: hch:HCH_05360 acyl-CoA dehydrogenase YP_960012.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: hch:HCH_05361 acyl-CoA dehydrogenase YP_960013.1 KEGG: mmr:Mmar10_0096 hypothetical protein YP_960014.1 PFAM: protein of unknown function DUF1078 domain protein; KEGG: hch:HCH_05365 flagellar hook protein FlgE YP_960015.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium YP_960016.1 TIGRFAM: biotin biosynthesis protein BioC; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: hch:HCH_05368 SAM-dependent methyltransferase YP_960017.1 KEGG: ppu:PP_0363 8-amino-7-oxononanoate synthase; TIGRFAM: 8-amino-7-oxononanoate synthase; PFAM: Orn/Lys/Arg decarboxylase, major region; aminotransferase, class I and II YP_960018.1 KEGG: hch:HCH_05371 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB YP_960019.1 KEGG: pae:PA0489 probable phosphoribosyl transferase YP_960020.1 PFAM: FAD dependent oxidoreductase; KEGG: reu:Reut_A1259 FAD dependent oxidoreductase YP_960021.1 KEGG: hch:HCH_05376 hypothetical protein YP_960022.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages YP_960023.1 KEGG: pfo:Pfl_1065 hypothetical protein YP_960024.1 TIGRFAM: putative methyltransferase; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: gme:Gmet_2532 methyltransferase YP_960025.1 TIGRFAM: putative methyltransferase; PFAM: methyltransferase, putative; Methyltransferase type 11; KEGG: hch:HCH_02237 SAM-dependent methyltransferase YP_960026.1 PFAM: adenylosuccinate synthetase; KEGG: hch:HCH_05377 adenylosuccinate synthetase YP_960027.1 PFAM: tRNA synthetase, class II (G, H, P and S); KEGG: pau:PA14_65250 putative ATP phosphoribosyltransferase YP_960028.1 TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: hch:HCH_05380 HflC protein YP_960029.1 TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: hch:HCH_05381 HflK protein YP_960030.1 PFAM: GTP-binding protein, HSR1-related; KEGG: hch:HCH_05382 GTPase YP_960031.1 TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein, core; KEGG: hch:HCH_05383 uncharacterized host factor I protein YP_960032.1 KEGG: psp:PSPPH_0564 tRNA delta(2)-isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase YP_960033.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex YP_960034.1 PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: hch:HCH_05387 N-acetylmuramoyl-L-alanine amidase YP_960035.1 PFAM: protein of unknown function UPF0079; KEGG: she:Shewmr4_0594 protein of unknown function UPF0079 YP_960036.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family N-terminal domain protein; KEGG: sde:Sde_2672 ribosomal protein S15 YP_960037.1 TIGRFAM: putative iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: psb:Psyr_0566 4Fe-4S cluster binding YP_960038.1 3'-5' exoribonuclease specific for small oligoribonuclotides YP_960039.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity YP_960040.1 PFAM: OmpA/MotB domain protein; KEGG: hch:HCH_05393 flagellar motor protein YP_960041.1 KEGG: hch:HCH_05394 flagellar motor component YP_960042.1 KEGG: hch:HCH_05397 phosphatidylserine decarboxylase; TIGRFAM: phosphatidylserine decarboxylase; PFAM: phosphatidylserine decarboxylase-related YP_960043.1 TIGRFAM: lysyl-tRNA synthetase-related protein GenX; PFAM: tRNA synthetase, class II (D, K and N); KEGG: msu:MS1633 truncated, possibly inactive Class II lysyl-tRNA synthetase YP_960044.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_960045.1 TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein; KEGG: csa:Csal_2532 protein of unknown function DUF160 YP_960046.1 KEGG: hch:HCH_05401 GTPase - translation elongation factor YP_960047.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: hch:HCH_05402 predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain YP_960048.1 KEGG: hch:HCH_05403 phosphoserine phosphatase SerB; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: amino acid-binding ACT domain protein; Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase, subfamily IB hypothetical 1; Haloacid dehalogenase domain protein hydrolase, type 3 YP_960049.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_960051.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: she:Shewmr4_0924 methyl-accepting chemotaxis sensory transducer YP_960052.1 PFAM: YceI family protein; KEGG: abo:ABO_0038 hypothetical protein YP_960053.1 PFAM: cytochrome B561; KEGG: abo:ABO_0037 putative cytochrome YP_960054.1 PFAM: EAL domain protein; KEGG: mfa:Mfla_2288 diguanylate phosphodiesterase (EAL domain) YP_960055.1 PFAM: Citrate transporter; TrkA-C domain protein; KEGG: csa:Csal_1106 TrkA-like protein YP_960056.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_960057.1 KEGG: sth:STH595 hypothetical protein YP_960058.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: hch:HCH_05735 subtilisin-like serine protease YP_960059.1 PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: hch:HCH_00560 probable membrane protein, transporter-related YP_960060.1 KEGG: hch:HCH_06837 hypothetical protein YP_960061.1 PFAM: transposase, mutator type; KEGG: net:Neut_0357 transposase, mutator type YP_960062.1 KEGG: abo:ABO_1760 hypothetical protein YP_960063.1 PFAM: regulatory protein, TetR; KEGG: pfo:Pfl_3944 transcriptional regulator, TetR family YP_960064.1 PFAM: protein of unknown function DUF1446; KEGG: hch:HCH_05745 predicted ATPase YP_960065.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: hch:HCH_05746 short-chain alcohol dehydrogenase-like protein YP_960066.1 PFAM: carboxyl transferase; KEGG: pae:PA2888 propionyl-CoA carboxylase beta chain YP_960067.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: hch:HCH_05750 acyl-CoA dehydrogenase YP_960068.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: abo:ABO_0987 enoyl-CoA hydratase YP_960069.1 PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: hch:HCH_05752 acetyl/propionyl-CoA carboxylase, alpha subunit YP_960070.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pfo:Pfl_5211 short chain dehydrogenase YP_960071.1 activates fatty acids by binding to coenzyme A YP_960072.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: hch:HCH_04350 NADPH:quinone reductase and related Zn-dependent oxidoreductase YP_960073.1 PFAM: BLUF domain protein; KEGG: aci:ACIAD1499 hypothetical protein YP_960074.1 PFAM: protein of unknown function UPF0126; KEGG: bte:BTH_I1558 YadS protein YP_960075.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: pau:PA14_62440 putative transporter YP_960076.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_960077.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: csa:Csal_0543 fumarylacetoacetate (FAA) hydrolase YP_960078.1 PFAM: ABC-1 domain protein; KEGG: hch:HCH_01665 predicted unusual protein kinase YP_960079.1 PFAM: Silent information regulator protein Sir2; KEGG: hch:HCH_00109 NAD-dependent protein deacetylases, SIR2 family YP_960080.1 PFAM: FAD linked oxidase domain protein; KEGG: hch:HCH_01647 FAD/FMN-containing dehydrogenase YP_960081.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_960082.1 KEGG: sfr:Sfri_2036 uncharacterized conserved coiled coil protein YP_960083.1 PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: hch:HCH_01540 outer membrane protein and related peptidoglycan-associated (LipO)protein YP_960084.1 PFAM: alpha/beta hydrolase fold; KEGG: hch:HCH_01539 lysophospholipase YP_960085.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: abo:ABO_2108 lipase/esterase YP_960086.1 PFAM: Excinuclease ABC, C subunit domain protein; KEGG: yps:YPTB0498 putative endonuclease YP_960087.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: cvi:CV3339 hypothetical protein YP_960088.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: aeh:Mlg_1377 two component, sigma54 specific, transcriptional regulator, fis family YP_960089.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: ilo:IL2583 signal transduction histidine kinase, contains HAMP domain YP_960090.1 KEGG: csa:Csal_1035 hypothetical protein YP_960091.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: csa:Csal_3140 TRAP dicarboxylate transporter-DctP subunit YP_960092.1 PFAM: MscS Mechanosensitive ion channel; KEGG: ilo:IL2542 small-conductance mechanosensitive channel YP_960093.1 KEGG: noc:Noc_1913 hypothetical protein YP_960094.1 PFAM: protein of unknown function DUF519; KEGG: csa:Csal_3310 protein of unknown function DUF519 YP_960095.1 KEGG: vpa:VP1920 putative iron-regulated protein A YP_960096.1 PFAM: protein of unknown function DUF1111; KEGG: pau:PA14_56840 putative thiol oxidoreductase YP_960097.1 KEGG: vvy:VV2117 predicted periplasmic lipoprotein YP_960098.1 PFAM: Uncharacterised conserved protein UCP028101; KEGG: sme:SMc00460 hypothetical protein YP_960099.1 KEGG: abo:ABO_2575 hypothetical protein YP_960100.1 KEGG: cvi:CV3914 hypothetical protein YP_960101.1 PFAM: chemotaxis sensory transducer; KEGG: pae:PA4290 probable chemotaxis transducer YP_960102.1 PFAM: protein of unknown function DUF839; KEGG: eba:ebA1724 predicted phosphatase YP_960103.1 KEGG: csa:Csal_2505 hypothetical protein YP_960105.1 PFAM: fatty acid desaturase; KEGG: aci:ACIAD1411 terminal alkane-1-monooxygenase YP_960106.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_960107.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: abo:ABO_0833 acyl-CoA dehydrogenase family protein YP_960108.1 PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; KEGG: abo:ABO_0832 transcriptional regulator, AraC family YP_960110.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rha:RHA1_ro01415 2,4-dienoyl-CoA reductase (NADPH) YP_960111.1 subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+ YP_960112.1 PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: pau:PA14_50720 hypothetical protein YP_960113.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: pae:PA1056 multicomponent K+:H+ antiporter subunit D YP_960114.1 PFAM: cation antiporter; KEGG: tcx:Tcr_0060 cation antiporter YP_960115.1 PFAM: multiple resistance and pH regulation protein F; KEGG: abo:ABO_2654 multisubunit Na+/H+ antiporter, MnhF subunit YP_960116.1 subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport YP_960117.1 subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+ YP_960118.1 subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_960119.1 subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_960120.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: aeh:Mlg_2093 NADH dehydrogenase (quinone) YP_960121.1 PFAM: cation antiporter; KEGG: aeh:Mlg_2094 cation antiporter YP_960122.1 PFAM: multiple resistance and pH regulation protein F; KEGG: aeh:Mlg_2095 multiple resistance and pH regulation protein F YP_960123.1 TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: aeh:Mlg_2096 monovalent cation/proton antiporter, MnhG/PhaG subunit YP_960124.1 PFAM: protein of unknown function DUF1255; KEGG: abo:ABO_2626 hypothetical protein YP_960125.1 activates fatty acids by binding to coenzyme A YP_960126.1 PFAM: FAD dependent oxidoreductase; KEGG: par:Psyc_0158 probable D-amino acid dehydrogenase subunit YP_960127.1 PFAM: translation initiation factor SUI1; KEGG: pca:Pcar_1480 hypothetical protein YP_960128.1 KEGG: ppr:PBPRB1261 hypothetical protein YP_960129.1 PFAM: protein of unknown function UPF0029; KEGG: aeh:Mlg_2174 protein of unknown function UPF0029 YP_960130.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: sus:Acid_7044 integral membrane sensor signal transduction histidine kinase YP_960131.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: aba:Acid345_4460 two component transcriptional regulator, winged helix family YP_960133.1 PFAM: protein of unknown function DUF482; KEGG: hch:HCH_00354 hypothetical protein YP_960135.1 PFAM: protein of unknown function DUF1458; KEGG: cps:CPS_0923 hypothetical protein YP_960136.1 KEGG: csa:Csal_3034 hypothetical protein YP_960137.1 KEGG: hch:HCH_02113 hypothetical protein YP_960138.1 PFAM: branched-chain amino acid transport; KEGG: vpa:VPA1004 putative transmembrane protein YP_960139.1 PFAM: AzlC family protein; KEGG: vpa:VPA1003 putataive branched-chain amino acid transport protein AzlC YP_960140.1 PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; KEGG: pat:Patl_2995 Glu/Leu/Phe/Val dehydrogenase, dimerisation region YP_960141.1 PFAM: sodium:neurotransmitter symporter; KEGG: csa:Csal_3274 sodium:neurotransmitter symporter YP_960142.1 PFAM: Silent information regulator protein Sir2; KEGG: xcb:XC_0318 NAD-dependent deacetylase YP_960143.1 PFAM: protein of unknown function DUF1415; KEGG: fth:FTH_0036 conserved hypothetical protein YP_960144.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pau:PA14_39130 putative ATP-binding component of ABC transporter YP_960145.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pae:PA4176 peptidyl-prolyl cis-trans isomerase C2 YP_960146.1 KEGG: hch:HCH_00756 hypothetical protein YP_960147.1 KEGG: aeh:Mlg_2173 hypothetical protein YP_960148.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: csa:Csal_0148 transcriptional regulator, LysR family YP_960150.1 PFAM: AMP-dependent synthetase and ligase; KEGG: hch:HCH_04499 long-chain acyl-CoA synthetases (AMP-forming) YP_960151.1 PFAM: arginine N-succinyltransferase beta subunit; KEGG: pha:PSHAa0195 arginine succinyltransferase YP_960152.1 KEGG: pha:PSHAb0425 hypothetical protein YP_960153.1 KEGG: nha:Nham_1929 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; Methyltransferase type 11 YP_960155.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: sde:Sde_2893 hypothetical protein YP_960156.1 PFAM: protein of unknown function DUF112, transmembrane; KEGG: csa:Csal_1455 protein of unknown function DUF112, transmembrane YP_960157.1 KEGG: csa:Csal_1454 putative tricarboxylic transport membrane protein YP_960158.1 PFAM: Uncharacterized protein UPF0065; KEGG: csa:Csal_1453 uncharacterized protein UPF0065 YP_960159.1 PFAM: ATP-binding region, ATPase domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: bat:BAS0527 sensor histidine kinase YP_960160.1 PFAM: response regulator receiver; KEGG: vvy:VV1604 response regulator of citrate/malate metabolism YP_960162.1 PFAM: protein of unknown function DUF1328; KEGG: pat:Patl_4137 protein of unknown function DUF1328 YP_960163.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: pae:PA3358 hypothetical protein YP_960164.1 KEGG: psb:Psyr_0176 hypothetical protein YP_960165.1 PFAM: sodium:dicarboxylate symporter; KEGG: mbu:Mbur_1020 sodium--dicarboxylate symporter YP_960166.1 PFAM: Lytic transglycosylase, catalytic; KEGG: cps:CPS_4758 transglycosylase SLT domain protein YP_960167.1 KEGG: sdn:Sden_3042 conserved hypothetical spermidine synthase YP_960168.1 KEGG: pat:Patl_4263 hypothetical protein YP_960169.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pen:PSEEN4317 16S rRNA pseudouridylate 516 synthase YP_960170.1 Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro, suggesting its involvement in the formation of the first peptide bond of a protein YP_960171.1 PFAM: thioesterase superfamily protein; KEGG: cbu:CBU_1269 long chain acyl-CoA thioester hydrolase family protein YP_960172.1 KEGG: ppu:PP_2167 hypothetical protein YP_960173.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_960174.1 KEGG: sde:Sde_0104 membrane protein-like YP_960175.1 KEGG: bbr:BB2790 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein YP_960176.1 KEGG: hch:HCH_04883 ABC-type amino acid transport/signal transduction system, periplasmic component/domain YP_960177.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: ppu:PP_3950 methyl-accepting chemotaxis transducer YP_960178.1 KEGG: noc:Noc_2135 hypothetical protein YP_960179.1 KEGG: bba:Bd1175 nucleoside-diphosphate-sugar epimerase YP_960180.1 PFAM: Class I peptide chain release factor; KEGG: csa:Csal_0173 class I peptide chain release factor YP_960181.1 PFAM: BCCT transporter; KEGG: csa:Csal_2888 BCCT transporter YP_960182.1 KEGG: aci:ACIAD3405 hypothetical protein YP_960183.1 KEGG: hch:HCH_00267 hypothetical protein YP_960184.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sru:SRU_1391 acetyltransferase YP_960185.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: sdn:Sden_3022 glutathione-dependent formaldehyde-activating, GFA YP_960186.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: pol:Bpro_5332 pyridoxamine 5'-phosphate oxidase-related, FMN-binding YP_960189.1 PFAM: ThiJ/PfpI domain protein; KEGG: mba:Mbar_A3285 transcriptional regulator, AraC family YP_960190.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bcn:Bcen_4712 GCN5-related N-acetyltransferase YP_960191.1 PFAM: Negative transcriptional regulator; KEGG: ilo:IL0303 transcriptional regulator, PaiB homolog YP_960192.1 KEGG: noc:Noc_0407 hypothetical protein YP_960193.1 KEGG: sfr:Sfri_2035 hypothetical protein YP_960194.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: pae:PA3897 hypothetical protein YP_960195.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: pfl:PFL_0999 transcriptional regulator, AraC family YP_960196.1 TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase, family 51; KEGG: sfr:Sfri_3569 monofunctional biosynthetic peptidoglycan transglycosylase YP_960197.1 KEGG: mxa:MXAN_2223 hypothetical protein YP_960198.1 PFAM: major facilitator superfamily MFS_1; KEGG: noc:Noc_1010 major facilitator superfamily MFS_1 YP_960199.1 KEGG: hch:HCH_00683 hypothetical protein YP_960200.1 KEGG: hch:HCH_00682 hypothetical protein YP_960201.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor, transmembrane region; KEGG: she:Shewmr4_0313 diguanylate cyclase YP_960202.1 PFAM: Ethanolamine ammonia lyase large subunit; KEGG: rfr:Rfer_0586 ethanolamine ammonia lyase large subunit YP_960203.1 catalyzes the formation of acetaldehyde from ethanolamine YP_960204.1 KEGG: hch:HCH_03007 hypothetical protein YP_960205.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; Male sterility C-terminal domain; KEGG: abo:ABO_0903 hypothetical protein YP_960206.1 KEGG: pau:PA14_56360 hypothetical protein YP_960207.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: ppu:PP_0893 ThiJ/PfpI family protein YP_960208.1 PFAM: Glutathione S-transferase, N-terminal domain; KEGG: bxe:Bxe_B0273 putative glutathione S-transferase YP_960209.1 PFAM: GatB/Yqey domain protein; KEGG: abo:ABO_2061 hypothetical protein YP_960210.1 PFAM: zinc/iron permease; KEGG: cps:CPS_2539 ZIP zinc transporter family protein YP_960211.1 KEGG: abo:ABO_2395 hypothetical protein YP_960212.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: bam:Bamb_4710 transcriptional regulator, GntR family YP_960213.1 KEGG: ava:Ava_1934 hypothetical protein YP_960214.1 PFAM: MgtC/SapB transporter; KEGG: gsu:GSU1929 MgtC family protein YP_960215.1 PFAM: protein of unknown function UPF0118; KEGG: noc:Noc_1381 hypothetical protein YP_960216.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: abo:ABO_0153 cold-shock protein YP_960217.1 TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: helix-turn-helix- domain containing protein, AraC type; methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: rso:RSc2570 probable ADA regulatory of adaptative response contains: methylated-DNA--protein-cysteine methyltransferaseO-6-methylguanine-DNA transcription regulator YP_960219.1 KEGG: abo:ABO_2055 hypothetical protein YP_960220.1 PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: pha:PSHAa1985 ATP-dependent helicase with nucleoside TriP hydrolase domain YP_960221.1 KEGG: abo:ABO_0143 hypothetical protein YP_960222.1 KEGG: pau:PA14_19950 hypothetical protein YP_960223.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: pat:Patl_1568 peptidylprolyl isomerase, FKBP-type YP_960224.1 PFAM: protein of unknown function DUF938; KEGG: noc:Noc_1253 protein of unknown function DUF938 YP_960225.1 KEGG: bam:Bamb_3584 hypothetical protein YP_960226.1 PFAM: protein of unknown function DUF891; KEGG: plt:Plut_0606 hypothetical protein YP_960227.1 PFAM: Cold-shock protein, DNA-binding; protein of unknown function DUF1294; SMART: Cold shock protein; KEGG: dps:DP2067 hypothetical protein YP_960228.1 PFAM: SEC-C motif domain protein; KEGG: vfi:VF1407 hypothetical protein YP_960229.1 KEGG: pat:Patl_3816 hypothetical protein YP_960230.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: hch:HCH_00852 ABC-type proline/glycine betaine transport system, periplasmic components YP_960231.1 PFAM: nucleoside 2-deoxyribosyltransferase; KEGG: atc:AGR_L_1489 hypothetical protein YP_960232.1 PFAM: Ankyrin YP_960233.1 KEGG: plt:Plut_1815 hypothetical protein YP_960234.1 PFAM: DNA polymerase, beta domain protein region; KEGG: cch:Cag_0331 hypothetical protein YP_960235.1 KEGG: pfo:Pfl_0229 hypothetical protein YP_960236.1 PFAM: conserved hypothetical protein 730; KEGG: hch:HCH_02003 predicted Rossmann fold nucleotide-binding protein YP_960238.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: mfa:Mfla_1161 thioredoxin YP_960239.1 KEGG: abo:ABO_0299 hypothetical protein YP_960240.1 KEGG: hch:HCH_06741 hypothetical protein YP_960241.1 PFAM: protein of unknown function UPF0156; KEGG: pfo:Pfl_3061 predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain YP_960242.1 PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; SMART: AAA ATPase; KEGG: hch:HCH_06235 IstB helper protein, IS21 family YP_960243.1 PFAM: Integrase, catalytic region; KEGG: eba:ebA2485 transposase YP_960244.1 PFAM: zinc finger, DksA/TraR C4-type; KEGG: ilo:IL0756 DnaK suppressor protein YP_960246.1 KEGG: bja:blr0872 hypothetical protein YP_960248.1 KEGG: she:Shewmr4_1551 hypothetical protein YP_960249.1 PFAM: NERD domain protein; DNA topoisomerase, type IA, zn finger domain protein; KEGG: sat:SYN_02043 hypothetical membrane protein YP_960250.1 PFAM: HupE/UreJ protein; KEGG: pcr:Pcryo_0886 HupE/UreJ protein YP_960251.1 TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein, P47K; KEGG: csa:Csal_2302 urease accessory protein UreG YP_960252.1 PFAM: Urease accessory protein UreF; KEGG: pcr:Pcryo_0884 urease accessory protein UreF YP_960253.1 PFAM: UreE urease accessory domain protein domain protein; UreE urease accessory domain protein; KEGG: pcr:Pcryo_0883 UreE urease accessory-like YP_960254.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits YP_960255.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo, while the other operon does not seem to be active YP_960256.1 UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter YP_960257.1 PFAM: Urease accessory protein UreD; KEGG: pha:PSHAa1756 urease accessory protein UreD YP_960258.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: csa:Csal_2309 ABC transporter related YP_960259.1 PFAM: ABC transporter related; KEGG: csa:Csal_2310 ABC transporter related YP_960260.1 PFAM: inner-membrane translocator; KEGG: abo:ABO_2511 branched-chain amino acid ABC transporter, permease protein YP_960261.1 PFAM: inner-membrane translocator; KEGG: csa:Csal_2312 inner-membrane translocator YP_960262.1 KEGG: hch:HCH_04519 ABC-type branched-chain amino acid transport system, periplasmic component YP_960264.1 KEGG: pfo:Pfl_4041 competence protein ComEA helix-hairpin-helix region; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding, class 1 YP_960265.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: gsu:GSU0574 hypothetical protein YP_960266.1 KEGG: abo:ABO_0095 lactoylglutathione lyase; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_960267.1 PFAM: regulatory protein GntR, HTH; KEGG: hch:HCH_04733 transcriptional regulator YP_960269.1 PFAM: conserved hypothetical protein 374; KEGG: ilo:IL0119 hypothetical protein YP_960270.1 PFAM: glycosyl transferase, group 1; KEGG: ilo:IL0120 membrane-associated protein YP_960271.1 PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; KEGG: abo:ABO_0764 hypothetical protein YP_960272.1 PFAM: protein of unknown function DUF481; KEGG: sfr:Sfri_0652 protein of unknown function DUF481 YP_960273.1 PFAM: Rhodanese domain protein; KEGG: sfr:Sfri_1535 rhodanese domain protein YP_960274.1 PFAM: DSBA oxidoreductase; KEGG: ade:Adeh_4049 DsbA oxidoreductase YP_960275.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: pfo:Pfl_5104 2-nitropropane dioxygenase, NPD YP_960276.1 PFAM: protein of unknown function DUF479; KEGG: pha:PSHAa2467 hypothetical protein YP_960277.1 KEGG: tcx:Tcr_0235 hypothetical protein YP_960279.1 KEGG: hch:HCH_04198 hypothetical protein YP_960280.1 KEGG: tcx:Tcr_0235 hypothetical protein YP_960282.1 KEGG: cps:CPS_2516 hypothetical protein YP_960283.1 KEGG: hch:HCH_00523 hypothetical protein YP_960284.1 PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: hch:HCH_00524 DnaJ-class molecular chaperone YP_960286.1 KEGG: hch:HCH_06861 hypothetical protein YP_960287.1 PFAM: major facilitator superfamily MFS_1; KEGG: xac:XAC1363 MFS transporter YP_960288.1 KEGG: abo:ABO_0236 hypothetical protein YP_960289.1 KEGG: abo:ABO_0235 hypothetical protein YP_960290.1 PFAM: OmpA/MotB domain protein; KEGG: abo:ABO_0234 flagellar motor protein YP_960291.1 KEGG: abo:ABO_0233 hypothetical protein YP_960292.1 PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein; KEGG: pfl:PFL_0589 transglutaminase domain protein YP_960293.1 PFAM: protein of unknown function DUF403; protein of unknown function DUF404; protein of unknown function DUF407; KEGG: dar:Daro_3009 protein of unknown function DUF403 YP_960294.1 PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein; KEGG: dar:Daro_3010 transglutaminase-like YP_960295.1 PFAM: protein of unknown function DUF403; KEGG: sde:Sde_3100 hypothetical protein YP_960296.1 PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: hch:HCH_00983 hypothetical protein YP_960297.1 KEGG: hch:HCH_03595 hypothetical protein YP_960298.1 KEGG: abo:ABO_2612 fructose-1,6-bisphosphate aldolase; TIGRFAM: ketose-bisphosphate aldolases; fructose-bisphosphate aldolase, class II, Calvin cycle subtype; PFAM: ketose-bisphosphate aldolase, class-II YP_960299.1 PFAM: phosphoglycerate kinase; KEGG: hch:HCH_01537 3-phosphoglycerate kinase YP_960300.1 PFAM: glyceraldehyde 3-phosphate dehydrogenase; KEGG: hch:HCH_01536 D-erythrose-4-phosphate dehydrogenase YP_960301.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_960302.1 PFAM: regulatory protein, ArsR; Methyltransferase type 11; Methyltransferase type 12; KEGG: hch:HCH_01534 SAM-dependent methyltransferase YP_960303.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_960304.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_960305.1 TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; KEGG: hch:HCH_01531 5,10-methylenetetrahydrofolate reductase YP_960306.1 PFAM: extracellular solute-binding protein, family 3; SMART: ionotropic glutamate receptor; KEGG: csa:Csal_3298 extracellular solute-binding protein, family 3 YP_960307.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csa:Csal_3297 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine YP_960308.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: csa:Csal_3296 ABC transporter related YP_960309.1 KEGG: hch:HCH_06841 hypothetical protein YP_960310.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate YP_960311.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_960312.1 KEGG: hch:HCH_01527 hypothetical protein YP_960313.1 PFAM: HDOD; KEGG: xac:XAC0101 hypothetical protein YP_960314.1 TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: hch:HCH_01524 ribonuclease BN-like family protein YP_960315.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: hch:HCH_01519 lactate dehydrogenase and related dehydrogenase YP_960316.1 PFAM: thiopurine S-methyltransferase; KEGG: pfo:Pfl_3985 thiopurine S-methyltransferase YP_960317.1 PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: hch:HCH_01481 putative Ser protein kinase YP_960318.1 PFAM: protein of unknown function DUF444; KEGG: hch:HCH_01480 hypothetical protein YP_960319.1 PFAM: SpoVR family protein; KEGG: hch:HCH_01479 hypothetical protein YP_960320.1 PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: csa:Csal_0631 periplasmic sensor signal transduction histidine kinase YP_960321.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: csa:Csal_0630 two component transcriptional regulator, winged helix family YP_960322.1 PFAM: Propeptide, PepSY amd peptidase M4; KEGG: csa:Csal_0629 hypothetical protein YP_960323.1 KEGG: csa:Csal_0628 hypothetical protein YP_960324.1 catalyzes the formation of L-tryptophan from indole and L-serine YP_960325.1 PFAM: LrgB family protein; KEGG: tcx:Tcr_1938 LrgB-like protein YP_960326.1 PFAM: LrgA family protein; KEGG: dar:Daro_3105 LrgA YP_960327.1 PFAM: Bile acid:sodium symporter; KEGG: syn:sll1428 P3 protein YP_960328.1 PFAM: protein of unknown function UPF0089; KEGG: abo:ABO_1804 acyltransferase YP_960329.1 PFAM: regulatory protein, TetR; KEGG: abo:ABO_1718 transcriptional regulator, TetR family YP_960330.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: abo:ABO_1717 flavodoxin reductases (ferredoxin-NADPH reductase)putative YP_960331.1 PFAM: fatty acid desaturase; KEGG: mmc:Mmcs_1259 fatty acid desaturase YP_960332.1 TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: sde:Sde_0101 hypothetical protein YP_960333.1 PFAM: protein of unknown function DUF454; KEGG: aeh:Mlg_1021 protein of unknown function DUF454 YP_960334.1 KEGG: csa:Csal_2076 molybdenum cofactor synthesis-like protein; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB YP_960335.1 PFAM: NosL family protein; KEGG: hch:HCH_03384 predicted lipoprotein involved in nitrous oxide reduction YP_960336.1 KEGG: pau:PA14_20170 nitrous-oxide reductase, NosY component YP_960337.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hch:HCH_03386 ABC-type multidrug transport system, ATPase component YP_960338.1 PFAM: periplasmic copper-binding; SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: hch:HCH_03387 nitrous oxidase accessory protein YP_960339.1 reduces nitrous oxide to nitrogen YP_960340.1 PFAM: FMN-binding domain protein; KEGG: pau:PA14_20230 NosR regulatory protein for N2O reductase YP_960341.1 KEGG: rfr:Rfer_2344 hypothetical protein YP_960342.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: pau:PA14_06870 transcriptional regulator Dnr YP_960343.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: abo:ABO_0542 peptidylprolyl isomerase YP_960344.1 TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase, gamma subunit; KEGG: abo:ABO_0543 respiratory nitrate reductase 1 gamma chain YP_960345.1 TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase, delta subunit; KEGG: eca:ECA2033 respiratory nitrate reductase 1 delta chain YP_960346.1 KEGG: csa:Csal_1331 nitrate reductase, beta subunit; TIGRFAM: nitrate reductase, beta subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_960347.1 TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: eca:ECA2031 respiratory nitrate reductase 1 alpha chain YP_960348.1 PFAM: major facilitator superfamily MFS_1; KEGG: nha:Nham_2459 major facilitator superfamily MFS_1 YP_960349.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: eca:ECA2029 nitrate/nitrite sensor kinase YP_960350.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: sdy:SDY_1275 NarL YP_960351.1 PFAM: Sterol-binding domain protein; KEGG: pau:PA14_13320 putative lipid carrier protein YP_960352.1 TIGRFAM: diguanylate cyclase; hemerythrin-like metal-binding protein; PFAM: GGDEF domain containing protein; EAL domain protein; Hemerythrin HHE cation binding domain protein; KEGG: rfr:Rfer_1983 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) YP_960353.1 PFAM: protein of unknown function DUF488; KEGG: noc:Noc_2090 protein of unknown function DUF488 YP_960354.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; FAD-binding 8 domain protein; Ferric reductase domain protein transmembrane component, N-terminal domain; KEGG: mag:amb3335 predicted ferric reductase YP_960355.1 PFAM: regulatory protein, TetR; KEGG: net:Neut_1933 transcriptional regulator, TetR family protein YP_960356.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: aeh:Mlg_1058 efflux transporter, RND family, MFP subunit YP_960357.1 PFAM: acriflavin resistance protein; KEGG: aeh:Mlg_1057 acriflavin resistance protein YP_960358.1 PFAM: peptidase U32; KEGG: cvi:CV4085 hypothetical protein YP_960359.1 PFAM: peptidase U32; KEGG: cps:CPS_2131 peptidase, U32 family YP_960360.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Nitrate and nitrite sensing domain protein; KEGG: ilo:IL1421 methyl-accepting chemotaxis protein YP_960361.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_960362.1 PFAM: deoxyribodipyrimidine photolyase-related protein; KEGG: pen:PSEEN2739 photolyase YP_960363.1 KEGG: sde:Sde_2275 cellulose-binding, family II YP_960364.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: abo:ABO_0119 haloacid dehalogenase-like hydrolase, putative YP_960365.1 KEGG: sfr:Sfri_0778 hypothetical protein YP_960366.1 PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein; KEGG: hne:HNE_3082 deoxyribodipyrimidine photolyase family protein YP_960367.1 PFAM: UspA domain protein; KEGG: rxy:Rxyl_0169 UspA YP_960368.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: cef:CE2664 putative transport protein YP_960369.1 TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: dar:Daro_2633 Cd(II)/Pb(II)-responsive transcriptional regulator YP_960370.1 PFAM: cation efflux protein; KEGG: pol:Bpro_3481 cation efflux protein YP_960371.1 KEGG: ava:Ava_3743 hypothetical protein YP_960372.1 PFAM: peptidase M12B, ADAM/reprolysin; Fibronectin, type III domain protein; KEGG: ade:Adeh_0912 fibronectin, type III/multicopper oxidase, type 2 YP_960373.1 PFAM: Rhomboid family protein; KEGG: vpa:VP0924 hypothetical protein YP_960374.1 PFAM: Auxin Efflux Carrier; KEGG: mag:amb2287 predicted permease YP_960375.1 PFAM: cytochrome c, class I; KEGG: cps:CPS_0600 nitric-oxide reductase, C subunit YP_960376.1 PFAM: cytochrome c oxidase, subunit I; KEGG: hch:HCH_04410 nitric oxide reductase large subunit YP_960377.1 KEGG: eba:ebA186 iron-sulfur cluster-binding protein YP_960378.1 PFAM: von Willebrand factor, type A; KEGG: tbd:Tbd_0555 putative nitric oxide reductase activation protein YP_960379.1 PFAM: cytochrome c oxidase, subunit III; KEGG: cps:CPS_2320 cytochrome c oxidase subunit III family protein YP_960381.1 KEGG: dar:Daro_3195 hypothetical protein YP_960382.1 PFAM: ATPase associated with various cellular activities, AAA_5; CbbQ/NirQ/NorQ C-terminal domain protein; KEGG: cps:CPS_2319 denitrification regulatory protein NirQ YP_960384.1 PFAM: cytochrome d1, heme region; KEGG: pae:PA0516 heme d1 biosynthesis protein NirF YP_960385.1 KEGG: hch:HCH_04417 cytochrome c, mono- and diheme variants YP_960386.1 PFAM: cytochrome d1, heme region; KEGG: pae:PA0519 nitrite reductase / hydroxylamine reductase YP_960387.1 KEGG: pau:PA14_06710 heme d1 biosynthesis protein NirD YP_960388.1 KEGG: cps:CPS_4224 putative heme biosynthesis protein YP_960389.1 KEGG: tbd:Tbd_0073 possible transcriptional regulator, AsnC family YP_960390.1 KEGG: sil:SPOA0226 nitrite reductase heme biosynthesis H protein YP_960391.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tbd:Tbd_0071 elongator protein 3/MiaB/NifB YP_960392.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pen:PSEEN2217 siroheme synthase YP_960393.1 PFAM: cytochrome c, class I; cytochrome d1, heme region; KEGG: hch:HCH_04424 cytochrome c, mono- and diheme variants YP_960394.1 KEGG: chu:CHU_1677 cyclic nucleotide binding regulatory protein YP_960395.1 TIGRFAM: flavoprotein WrbA; PFAM: flavodoxin/nitric oxide synthase; KEGG: stm:STM1119 trp-repressor binding protein YP_960396.1 TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: abo:ABO_2634 membrane protein, hemolysin III homolog, putative YP_960397.1 PFAM: NnrS family protein; KEGG: net:Neut_0425 NnrS family protein YP_960398.1 KEGG: aeh:Mlg_1004 nitrate/nitrite antiporter YP_960399.1 PFAM: Ankyrin; KEGG: aeh:Mlg_2666 ankyrin YP_960400.1 PFAM: major facilitator superfamily MFS_1; KEGG: aeh:Mlg_1007 major facilitator superfamily MFS_1 YP_960401.1 PFAM: UspA domain protein; KEGG: aeh:Mlg_1008 UspA domain protein YP_960402.1 PFAM: major facilitator superfamily MFS_1; KEGG: csa:Csal_1329 nitrate transporter YP_960403.1 PFAM: protein of unknown function DUF55; KEGG: hch:HCH_00785 hypothetical protein YP_960404.1 PFAM: Ion transport protein; KEGG: cps:CPS_3585 cation channel family protein YP_960405.1 PFAM: Invasion gene expression up-regulator, SirB; KEGG: cvi:CV4078 hypothetical protein YP_960406.1 PFAM: NnrS family protein; KEGG: abo:ABO_2561 hypothetical protein YP_960407.1 PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: mes:Meso_4050 activator of HSP90 ATPase-like YP_960408.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP YP_960409.1 PFAM: beta-ketoacyl synthase; KEGG: pat:Patl_3383 beta-ketoacyl synthase YP_960410.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: hch:HCH_00532 AraC-type DNA-binding domain-containing protein YP_960411.1 PFAM: peptidase U32; KEGG: sde:Sde_1363 regulatory protein, LacI YP_960412.1 with SufCD activates cysteine desulfurase SufS YP_960413.1 KEGG: hch:HCH_01414 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase YP_960414.1 TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: hch:HCH_01413 FeS assembly protein SufD YP_960415.1 TIGRFAM: cysteine desulfurases, SufS subfamily; PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: hch:HCH_01412 selenocysteine lyase YP_960416.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: hch:HCH_01411 hypothetical protein YP_960417.1 PFAM: protein of unknown function DUF59; KEGG: hch:HCH_01409 predicted metal-sulfur cluster biosynthetic enzyme YP_960418.1 PFAM: Fe-S metabolism associated SufE; KEGG: hch:HCH_01408 SufE protein probably involved in Fe-S center assembly YP_960419.1 KEGG: hch:HCH_01368 hypothetical protein YP_960420.1 PFAM: protein of unknown function DUF400; KEGG: hch:HCH_01367 hypothetical protein YP_960421.1 PFAM: Polynucleotide adenylyltransferase region; KEGG: ppu:PP_0394 tRNA nucleotidyltransferase (CCA-adding enzyme) YP_960422.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: abo:ABO_2053 dehydrogenase/reductase YP_960423.1 KEGG: hch:HCH_01365 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase YP_960424.1 TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pau:PA14_67710 putative RNA methylase YP_960425.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA YP_960426.1 PFAM: Rhodanese domain protein; KEGG: hch:HCH_01353 rhodanese-related sulfurtransferase YP_960427.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate YP_960428.1 PFAM: peptidase M23B; KEGG: abo:ABO_2275 hypothetical protein YP_960429.1 KEGG: hch:HCH_01350 periplasmic protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41 YP_960430.1 PFAM: protein of unknown function DUF610, YibQ; KEGG: hch:HCH_01349 hypothetical protein YP_960431.1 TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis; KEGG: hch:HCH_01347 imidazoleglycerol-phosphate synthase YP_960432.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_960433.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_960434.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_960435.1 KEGG: hch:HCH_01341 hypothetical protein YP_960436.1 PFAM: AsmA family protein; KEGG: ppu:PP_0287 putative AsmA protein YP_960437.1 KEGG: abo:ABO_2285 A/G specific adenine glycosylase; TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop YP_960438.1 PFAM: Fe(II) trafficking protein YggX; KEGG: sde:Sde_0336 thiamine biosynthesis protein ThiC YP_960439.1 PFAM: phage integrase family protein; KEGG: rso:RSc1655 probable integrase/recombinase protein YP_960440.1 PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; SMART: AAA ATPase; KEGG: hch:HCH_06235 IstB helper protein, IS21 family YP_960441.1 PFAM: Integrase, catalytic region; KEGG: eba:ebA2485 transposase YP_960442.1 PFAM: Integrase, catalytic region; KEGG: nmu:Nmul_A2174 integrase, catalytic region YP_960443.1 PFAM: transposase IS3/IS911 family protein; KEGG: nmu:Nmul_A0169 transposase IS3/IS911 YP_960444.1 KEGG: ilo:IL1616 transposase Tra5 related protein YP_960445.1 KEGG: sde:Sde_0207 cobyric acid synthase CobQ YP_960446.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: sde:Sde_0208 hypothetical protein YP_960447.1 KEGG: hch:HCH_05634 hypothetical protein YP_960448.1 PFAM: Integrase, catalytic region; KEGG: hch:HCH_06236 transposase, IS21 family YP_960449.1 PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; SMART: AAA ATPase; KEGG: hch:HCH_06235 IstB helper protein, IS21 family YP_960450.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: csa:Csal_0148 transcriptional regulator, LysR family YP_960451.1 KEGG: csa:Csal_2472 hypothetical protein YP_960452.1 TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: eli:ELI_10830 putative chromate transport protein YP_960453.1 KEGG: rfr:Rfer_2446 chromate resistance exported protein YP_960454.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: abo:ABO_2470 cation efflux family protein YP_960455.1 PFAM: protein of unknown function DUF156; KEGG: ret:RHE_PE00217 hypothetical protein YP_960457.1 KEGG: pcr:Pcryo_1770 putative ORF1 (plasmid pTOM9) YP_960458.1 KEGG: pcr:Pcryo_1771 putative (L31491) ORF2; putative (plasmid pTOM9) YP_960459.1 TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: noc:Noc_2763 virulence-associated protein, putative YP_960460.1 PFAM: plasmid maintenance system killer; KEGG: noc:Noc_2762 plasmid maintenance system killer YP_960461.1 PFAM: Uncharacterized protein UPF0114; KEGG: plt:Plut_1520 hypothetical protein YP_960462.1 PFAM: transposase, mutator type; KEGG: bxe:Bxe_B0295 transposase YP_960464.1 TIGRFAM: integron integrase; PFAM: phage integrase family protein; KEGG: sdn:Sden_1131 integron integrase YP_960468.1 PFAM: phage integrase family protein; KEGG: bps:BPSL0587 phage integrase family protein YP_960469.1 KEGG: ilo:IL1216 uncharacterized conserved secreted protein with internal repeats YP_960470.1 KEGG: bxe:Bxe_C0883 heavy metal/H+ antiporter, CDF family YP_960471.1 KEGG: sdn:Sden_0608 hypothetical protein YP_960472.1 PFAM: protein of unknown function DUF125, transmembrane; KEGG: csa:Csal_2162 protein of unknown function DUF125, transmembrane YP_960473.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; PepSY-associated TM helix domain protein; flavodoxin/nitric oxide synthase; Oxidoreductase FAD-binding domain protein; KEGG: eba:ebA3193 putative oxidoreductase, FAD-binding YP_960474.1 KEGG: eba:ebA3194 hypothetical protein YP_960475.1 KEGG: eba:ebA3195 hypothetical protein YP_960476.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; FAD-binding 8 domain protein; Ferric reductase domain protein transmembrane component, N-terminal domain; KEGG: eba:ebA3186 hypothetical protein YP_960477.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bte:BTH_II0903 DNA-binding response regulator YP_960478.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: bmb:BruAb2_0223 sensor histidine kinase YP_960479.1 PFAM: regulatory protein, TetR; KEGG: abo:ABO_0675 transcriptional regulator, TetR family YP_960480.1 KEGG: abo:ABO_0674 hypothetical protein YP_960481.1 KEGG: abo:ABO_0673 hypothetical protein YP_960482.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: abo:ABO_0672 oxidoreductase YP_960483.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: abo:ABO_0671 oxidoreductase YP_960484.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: abo:ABO_0670 oxidoreductase YP_960485.1 KEGG: abo:ABO_0669 hypothetical protein YP_960486.1 PFAM: alpha/beta hydrolase fold; KEGG: abo:ABO_0668 hydrolase YP_960487.1 KEGG: abo:ABO_0667 BNR domain protein, putative YP_960488.1 KEGG: abo:ABO_0666 hypothetical protein YP_960489.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: abo:ABO_0665 probable transctiptional regulator YP_960490.1 KEGG: xac:XACb0013 ISxac2 transposase YP_960491.1 KEGG: abo:ABO_0664 hypothetical protein YP_960492.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: sde:Sde_2274 AraC-type DNA-binding domain-containing proteins-like YP_960493.1 KEGG: gsu:GSU3151 hypothetical protein YP_960494.1 KEGG: sme:SMb20780 putative reverse transcriptasematurase of intron RmInt1 protein YP_960495.1 KEGG: eba:ebA4939 reverse transcriptase/maturase YP_960496.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: ana:all8086 transcriptional regulator YP_960497.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: ana:all8087 glycerate dehydrogenase YP_960498.1 TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ana:all8088 phosphonate transport system permease protein YP_960499.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: ana:all8089 putative phosphonate transport system substrate-binding protein YP_960500.1 KEGG: ana:all8090 phosphonate transport system ATP-binding protein; TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_960501.1 KEGG: neu:NE0835 transposase Tn3 family YP_960504.1 PFAM: protein of unknown function DUF411; KEGG: aeh:Mlg_2643 protein of unknown function DUF411 YP_960505.1 KEGG: sus:Acid_5189 hypothetical protein YP_960506.1 PFAM: cytochrome c, class I; KEGG: rsp:RSP_3264 probable C-type cytochrome YP_960507.1 KEGG: hch:HCH_03039 hypothetical protein YP_960508.1 PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: net:Neut_0054 cytochrome c biogenesis protein, transmembrane region YP_960510.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_960511.1 PFAM: acetyl-CoA hydrolase/transferase; KEGG: rru:Rru_A2513 acetyl-CoA hydrolase/transferase YP_960512.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: pen:PSEEN2877 phosphonate-binding periplasmic protein YP_960513.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: ppu:PP_3182 GGDEF domain protein YP_960514.1 KEGG: mxa:MXAN_0271 putative lipoprotein YP_960515.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: wsu:WS1549 phosphate-binding protein of phosphonate ABC transporter YP_960516.1 KEGG: csa:Csal_0248 phosphonate ABC transporter PhnC, ATP-binding; TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_960517.1 TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csa:Csal_0249 phosphonate uptake transporter YP_960518.1 TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpc:RPC_3863 phosphonate uptake transporter YP_960519.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rde:RD1_3618 hydrolase, putative YP_960520.1 KEGG: pat:Patl_1752 hypothetical protein YP_960523.1 KEGG: nar:Saro_0110 phenylacetic acid degradation-related protein YP_960525.1 KEGG: sit:TM1040_1048 ABC-type amino acid transport/signal transduction system YP_960527.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Nitrate and nitrite sensing domain protein; KEGG: cps:CPS_1937 methyl-accepting chemotaxis protein YP_960528.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; KEGG: hch:HCH_03107 FOG: PAS/PAC domain YP_960529.1 KEGG: hch:HCH_02060 hypothetical protein YP_960530.1 KEGG: ilo:IL1216 uncharacterized conserved secreted protein with internal repeats YP_960531.1 KEGG: bxe:Bxe_C0883 heavy metal/H+ antiporter, CDF family YP_960532.1 KEGG: ilo:IL0633 lipoprotein signal peptidase; TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8, signal peptidase II YP_960533.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: sil:SPO1387 cation efflux system protein YP_960534.1 PFAM: Bile acid:sodium symporter; KEGG: gox:GOX0688 putative efflux protein YP_960535.1 PFAM: DSBA oxidoreductase; KEGG: net:Neut_0081 DsbA oxidoreductase YP_960536.1 KEGG: hch:HCH_04018 predicted membrane protein YP_960537.1 PFAM: electron transport protein SCO1/SenC; KEGG: hch:HCH_04019 uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems YP_960540.1 PFAM: beta-lactamase; KEGG: atc:AGR_C_1692 hypothetical protein YP_960541.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: bpe:BP3092 putative phospholipase D protein YP_960542.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN1517 methyl-accepting chemotaxis transducer YP_960543.1 PFAM: NADPH-dependent FMN reductase; KEGG: neu:NE1004 hypothetical protein YP_960545.1 KEGG: csa:Csal_1669 hypothetical protein YP_960546.1 PFAM: phospholipase/Carboxylesterase; KEGG: ppr:PBPRB0318 hypothetical phospholipase/carboxylesterase family protein YP_960547.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: aeh:Mlg_2422 ATPase, ParA family YP_960548.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: vvy:VV0097 putative threonine efflux protein YP_960549.1 TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: dde:Dde_1854 K+-dependent Na+/Ca+ exchanger related-protein YP_960550.1 KEGG: hch:HCH_04116 hypothetical protein YP_960551.1 PFAM: periplasmic binding protein; KEGG: bld:BLi00466 similar to ferrichrome ABC transporter (binding protein); RBL01331 YP_960552.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: plu:plu2850 unnamed protein product; similar to outer membrane protein precursor YP_960553.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: csa:Csal_2679 transcriptional regulator, LysR family YP_960554.1 PFAM: periplasmic binding protein; KEGG: csa:Csal_2699 periplasmic binding protein YP_960555.1 PFAM: transport system permease protein; KEGG: csa:Csal_2700 transport system permease protein YP_960556.1 PFAM: transport system permease protein; KEGG: csa:Csal_2701 transport system permease protein YP_960557.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: csa:Csal_2702 ABC transporter related YP_960558.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: aeh:Mlg_1176 drug resistance transporter, Bcr/CflA subfamily YP_960559.1 KEGG: abo:ABO_2054 hypothetical protein YP_960560.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: par:Psyc_1652 glycolate oxidase iron-sulfur subunit YP_960561.1 PFAM: FAD linked oxidase domain protein; KEGG: par:Psyc_1651 glycolate oxidase subunit GlcE YP_960562.1 PFAM: FAD linked oxidase domain protein; KEGG: par:Psyc_1650 glycolate oxidase subunit D YP_960563.1 PFAM: protein of unknown function DUF336; KEGG: cps:CPS_4893 putative GlcG protein YP_960564.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pau:PA14_70710 glc operon transcriptional activator YP_960565.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hch:HCH_05213 ABC-type histidine transport system, ATPase component YP_960566.1 PFAM: extracellular solute-binding protein, family 3; KEGG: csa:Csal_2793 extracellular solute-binding protein, family 3 YP_960567.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csa:Csal_2782 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine YP_960568.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_05216 ABC-type arginine/histidine transport system, permease component YP_960569.1 catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism YP_960570.1 PFAM: acriflavin resistance protein; KEGG: hch:HCH_05601 cation/multidrug efflux pump YP_960571.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: mca:MCA2814 efflux transporter, RND family, MFP subunit YP_960572.1 PFAM: regulatory protein, TetR; KEGG: sru:SRU_2786 transcriptional regulator, TetR family protein YP_960573.1 catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation YP_960574.1 PFAM: aldehyde dehydrogenase; KEGG: ilo:IL2316 succinylglutamic semialdehyde dehydrogenase YP_960575.1 PFAM: arginine N-succinyltransferase beta subunit; KEGG: hch:HCH_01949 arginine N-succinyltransferase, beta subunit YP_960576.1 PFAM: arginine N-succinyltransferase beta subunit; KEGG: hch:HCH_01948 arginine N-succinyltransferase, alpha subunit YP_960577.1 DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate YP_960578.1 KEGG: bxe:Bxe_A3516 putative transposase YP_960579.1 KEGG: pha:PSHAa0696 hypothetical protein YP_960580.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pau:PA14_05840 glutaryl-CoA dehydrogenase YP_960581.1 KEGG: pae:PA5265 hypothetical protein YP_960582.1 KEGG: pst:PSPTO_0779 hypothetical protein YP_960583.1 KEGG: pst:PSPTO_0779 hypothetical protein YP_960584.1 KEGG: pst:PSPTO_0779 hypothetical protein YP_960585.1 KEGG: hch:HCH_01273 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein YP_960586.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC YP_960587.1 KEGG: aeh:Mlg_1185 radical SAM domain protein YP_960588.1 KEGG: hch:HCH_01259 hypothetical protein YP_960589.1 TIGRFAM: thioredoxin; PFAM: Redoxin domain protein; Thioredoxin domain; KEGG: hch:HCH_01258 thioredoxin domain-containing protein YP_960590.1 KEGG: hch:HCH_01256 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase YP_960591.1 PFAM: regulatory protein, MarR; Penicillinase repressor; KEGG: vch:VC1278 transcriptional regulator, MarR family YP_960592.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sde:Sde_1193 hypothetical protein YP_960593.1 PFAM: Extracellular ligand-binding receptor; KEGG: psb:Psyr_3845 extracellular ligand-binding receptor YP_960594.1 PFAM: inner-membrane translocator; KEGG: hch:HCH_01254 branched-chain amino acid ABC-type transport system, permease components YP_960595.1 Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine YP_960596.1 Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine YP_960597.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hch:HCH_01250 ABC-type branched-chain amino acid transport system, ATPase component YP_960598.1 KEGG: pst:PSPTO_5471 hypothetical protein YP_960599.1 KEGG: noc:Noc_2202 hypothetical protein YP_960600.1 KEGG: noc:Noc_2201 hypothetical protein YP_960601.1 KEGG: noc:Noc_2200 lipoprotein, putative YP_960602.1 KEGG: hch:HCH_01244 polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein YP_960603.1 PFAM: ribosomal protein S15; KEGG: hch:HCH_01243 ribosomal protein S15 YP_960604.1 KEGG: sbo:SBO_3216 tRNA pseudouridine 5S synthase; TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein YP_960605.1 PFAM: ribosome-binding factor A; KEGG: hch:HCH_01240 ribosome-binding factor A YP_960606.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_960607.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_960608.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins YP_960609.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: hch:HCH_01236 preprotein translocase, SecG subunit YP_960610.1 PFAM: triosephosphate isomerase; KEGG: tcx:Tcr_0815 triosephosphate isomerase YP_960611.1 TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: hch:HCH_01234 phosphoglucosamine mutase YP_960612.1 KEGG: pfo:Pfl_0773 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS YP_960613.1 KEGG: hch:HCH_01232 ATP-dependent Zn protease; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase YP_960614.1 PFAM: protein of unknown function UPF0044; KEGG: hch:HCH_01230 predicted RNA-binding protein containing KH domain, possibly ribosomal protein YP_960615.1 TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: hch:HCH_01229 transcription elongation factor YP_960616.1 TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; protein of unknown function DUF201; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain, oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: psp:PSPPH_4202 carbamoyl-phosphate synthase, large subunit YP_960617.1 TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl-phosphate synthase, small chain; KEGG: pae:PA4758 carbamoyl-phosphate synthase small chain YP_960618.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_960619.1 TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ central domain protein; heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: hch:HCH_01225 DnaJ-class molecular chaperone with C-terminal Zn finger domain YP_960620.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_960621.1 PFAM: GrpE protein; KEGG: hch:HCH_01223 molecular chaperone GrpE (heat shock protein) YP_960622.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: psp:PSPPH_4208 DNA repair protein RecN YP_960623.1 PFAM: ferric-uptake regulator; KEGG: hch:HCH_01221 Fe2+/Zn2+ uptake regulation protein YP_960624.1 PFAM: SmpA/OmlA domain protein; KEGG: hch:HCH_01219 small protein A (tmRNA-binding) YP_960625.1 PFAM: protein of unknown function UPF0125; KEGG: hch:HCH_01218 hypothetical protein YP_960626.1 PFAM: cyclase/dehydrase; KEGG: hch:HCH_01217 oligoketide cyclase/lipid transport protein YP_960627.1 PFAM: sodium:neurotransmitter symporter; KEGG: csa:Csal_3274 sodium:neurotransmitter symporter YP_960628.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_960629.1 PFAM: condensation domain protein; protein of unknown function UPF0089; KEGG: hch:HCH_01214 hypothetical protein YP_960630.1 PFAM: protein of unknown function DUF159; KEGG: pca:Pcar_0985 hypothetical protein YP_960631.1 KEGG: vvy:VV0804 hypothetical protein YP_960633.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: gsu:GSU2438 prevent-host-death family protein YP_960634.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: ppr:PBPRB1201 putative relE protein YP_960635.1 PFAM: phage integrase family protein; KEGG: nmu:Nmul_A2184 phage integrase YP_960636.1 KEGG: nwi:Nwi_1258 hypothetical protein YP_960638.1 PFAM: N-6 DNA methylase; KEGG: noc:Noc_1809 type I restriction enzyme M protein YP_960639.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: ypn:YPN_0496 hypothetical protein YP_960640.1 PFAM: restriction modification system DNA specificity domain; KEGG: pol:Bpro_1941 restriction endonuclease S subunits-like YP_960641.1 PFAM: restriction endonuclease; KEGG: ttj:TTHA1364 hypothetical protein YP_960642.1 KEGG: hch:HCH_06453 hypothetical protein YP_960643.1 TIGRFAM: DNA binding domain, excisionase family; PFAM: regulatory protein, MerR; KEGG: hch:HCH_06454 type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit YP_960644.1 KEGG: noc:Noc_1804 type I site-specific deoxyribonuclease HsdR; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases-like YP_960645.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: dde:Dde_3420 PDZ/DHR/GLGF YP_960646.1 PFAM: peptidase M48, Ste24p; KEGG: mfa:Mfla_1159 peptidase M48, Ste24p YP_960647.1 KEGG: mfa:Mfla_1160 hypothetical protein YP_960648.1 KEGG: dde:Dde_3417 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_960649.1 KEGG: dde:Dde_3415 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; SMART: AAA ATPase YP_960650.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: mfa:Mfla_1169 phospholipase D/transphosphatidylase YP_960651.1 PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: mfa:Mfla_1170 ATPase AAA-2 YP_960652.1 PFAM: heat shock protein Hsp20; KEGG: dde:Dde_3412 small HspC2 heat shock protein YP_960653.1 KEGG: csa:Csal_2718 exopolysaccharide synthesis, ExoD YP_960654.1 PFAM: response regulator receiver; CheW domain protein; KEGG: shm:Shewmr7_1437 response regulator receiver modulated CheW protein YP_960655.1 catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis YP_960656.1 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate YP_960657.1 TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: hch:HCH_03699 Ca2+/Na+ antiporter YP_960658.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: lpn:lpg0551 1-acyl-sn-glycerol-3-phosphate acetyltransferase YP_960659.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress YP_960660.1 KEGG: abo:ABO_1530 methionine sulfoxide peptide reductase; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A YP_960661.1 PFAM: metallophosphoesterase; KEGG: hch:HCH_04892 predicted phosphohydrolase YP_960662.1 PFAM: protein of unknown function DUF46; KEGG: hch:HCH_02040 CDP-diglyceride synthetase YP_960663.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle YP_960664.1 KEGG: hch:HCH_01602 hypothetical protein YP_960665.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; uncharacterized peroxidase-related enzyme; PFAM: Carboxymuconolactone decarboxylase; KEGG: bam:Bamb_4745 uncharacterized peroxidase-related enzyme YP_960666.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: eba:ebA3654 alcohol dehydrogenase YP_960667.1 PFAM: regulatory protein, TetR; KEGG: dar:Daro_1527 regulatory protein, TetR YP_960668.1 PFAM: aldehyde dehydrogenase; KEGG: hch:HCH_01852 NAD-dependent aldehyde dehydrogenase YP_960669.1 PFAM: protein of unknown function UPF0089; KEGG: hch:HCH_01086 non-ribosomal peptide synthetase modules and related protein YP_960670.1 KEGG: hch:HCH_01085 hypothetical protein YP_960671.1 KEGG: hch:HCH_01084 hypothetical protein YP_960672.1 TIGRFAM: putative polyhydroxyalkanoic acid system protein; KEGG: hch:HCH_01083 hypothetical protein YP_960673.1 TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: hch:HCH_01082 methylase involved in ubiquinone/menaquinone biosynthesis YP_960674.1 PFAM: protein of unknown function DUF1243; KEGG: hch:HCH_01081 hypothetical protein YP_960675.1 TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: hch:HCH_01080 2-polyprenylphenol 6-hydroxylase YP_960676.1 PFAM: phosphoribosyl-AMP cyclohydrolase; KEGG: pen:PSEEN5076 phosphoribosyl-AMP cyclohydrolase YP_960677.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis YP_960678.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: abo:ABO_2250 sec-independent protein translocase protein TatA/E homolog YP_960679.1 TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: hch:HCH_01075 twin-arginine translocation protein TatB YP_960680.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: vfi:VF0051 sec-independent protein translocase protein TatC YP_960681.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_960682.1 PFAM: protein of unknown function DUF808; KEGG: tbd:Tbd_0220 hypothetical protein YP_960683.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: pfl:PFL_5965 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase YP_960684.1 Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone YP_960685.1 PFAM: peptidase M24; peptidase M24B, X-Pro dipeptidase/aminopeptidase domain protein; KEGG: pau:PA14_69000 aminopeptidase P YP_960686.1 PFAM: protein of unknown function UPF0149; KEGG: aeh:Mlg_2541 YecA family protein YP_960687.1 KEGG: hch:HCH_00656 ABC-type metal ion transport system, periplasmic component/surface adhesin YP_960688.1 KEGG: pat:Patl_0305 hypothetical protein YP_960689.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mfa:Mfla_0705 ABC transporter related YP_960690.1 PFAM: protein of unknown function DUF214; KEGG: vpa:VP0300 putative ABC transport system permease protein YP_960691.1 KEGG: hch:HCH_01066 hypothetical protein YP_960692.1 PFAM: protein of unknown function DUF710; KEGG: hch:HCH_01065 hypothetical protein YP_960693.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: csa:Csal_0021 5-formyltetrahydrofolate cyclo-ligase YP_960694.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway YP_960695.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway YP_960696.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pau:PA14_44590 putative acyl-CoA dehydrogenase YP_960697.1 PFAM: Inorganic pyrophosphatase; KEGG: hch:HCH_01060 inorganic pyrophosphatase YP_960698.1 KEGG: hch:HCH_06000 hypothetical protein YP_960699.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: hch:HCH_06001 FOG: EAL domain YP_960700.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: hch:HCH_06003 response regulator containing a CheY-like receiver domain and a GGDEF domain YP_960701.1 KEGG: hch:HCH_06004 chorismate mutase, putative; TIGRFAM: 3-dehydroquinate dehydratase, type II; PFAM: dehydroquinase, class II YP_960702.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: abo:ABO_2009 acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_960703.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: hch:HCH_06006 acetyl-CoA carboxylase, biotin carboxylase YP_960704.1 TIGRFAM: ribosomal protein L11 methyltransferase; PFAM: methyltransferase small; ribosomal L11 methyltransferase; Methyltransferase type 12; KEGG: pau:PA14_64140 ribosomal protein L11 methyltransferase YP_960705.1 TIGRFAM: MJ0042 family finger-like protein; KEGG: pau:PA14_64170 hypothetical protein YP_960706.1 TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; dihydroorotate dehydrogenase; KEGG: pau:PA14_64180 putative tRNA-dihydrouridine synthase YP_960707.1 Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription YP_960708.1 involved in de novo purine biosynthesis YP_960709.1 KEGG: vpa:VP2898 phosphoribosylamine-glycine ligase; TIGRFAM: phosphoribosylamine--glycine ligase; PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; protein of unknown function DUF201 YP_960710.1 PFAM: alpha/beta hydrolase fold; KEGG: hch:HCH_00360 predicted hydrolase or acyltransferase (alpha/beta hydrolase superfamily) YP_960711.1 PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: rde:RD1_1689 putative potassium efflux transporter YP_960712.1 PFAM: protein of unknown function DUF323; KEGG: ade:Adeh_2207 protein of unknown function DUF323 YP_960713.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: aeh:Mlg_1408 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family YP_960714.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: aeh:Mlg_1409 efflux transporter, RND family, MFP subunit YP_960715.1 PFAM: regulatory protein, TetR; Tetracycline transcriptional repressor MAATS-type, C-terminal domain protein; KEGG: csa:Csal_0947 transcriptional regulator, TetR family YP_960716.1 PFAM: Citrate transporter; TrkA-C domain protein; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ilo:IL2505 Na+/anion symporter YP_960717.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: cvi:CV0688 probable transcriptional regulatory protein YP_960718.1 KEGG: reu:Reut_B5394 hypothetical protein YP_960719.1 KEGG: rso:RSc0446 probable lipoprotein YP_960720.1 PFAM: peptidase C39, bacteriocin processing; KEGG: rso:RSc0445 hypothetical signal peptide protein YP_960721.1 KEGG: net:Neut_1086 conserved hypothetical protein YP_960722.1 KEGG: pat:Patl_2314 dentin sialophosphoprotein YP_960723.1 Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates YP_960724.1 PFAM: protein of unknown function DUF1538; KEGG: aeh:Mlg_0659 protein of unknown function DUF1538 YP_960725.1 KEGG: aeh:Mlg_0660 hypothetical protein YP_960726.1 PFAM: CBS domain containing protein; KEGG: aeh:Mlg_0661 putative signal-transduction protein with CBS domains YP_960727.1 KEGG: mlo:mll0907 probable secreted protein YP_960728.1 putative role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport YP_960729.1 KEGG: reu:Reut_B5701 helix-turn-helix protein, CopG YP_960730.1 PFAM: protein of unknown function DUF399; KEGG: tcx:Tcr_0011 protein of unknown function DUF399 YP_960731.1 PFAM: protein of unknown function DUF541; KEGG: sfr:Sfri_2301 protein of unknown function DUF541 YP_960732.1 PFAM: Hyaluronidase; KEGG: rfe:RF_pd56 hyaluronidase YP_960733.1 PFAM: acyltransferase 3; KEGG: chu:CHU_1343 acyltransferase family protein YP_960734.1 KEGG: ilo:IL1219 hypothetical protein YP_960735.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: vpa:VP1911 extracellular solute-binding protein, family 7 YP_960736.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: hch:HCH_00416 TRAP-type mannitol/chloroaromatic compound transport system, small permease component YP_960737.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: hch:HCH_00417 TRAP-type mannitol/chloroaromatic compound transport system, large permease component YP_960738.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: bat:BAS3207 cyclopropane-fatty-acyl-phospholipid synthase YP_960739.1 TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: cya:CYA_1990 geranylgeranyl reductase family protein YP_960740.1 PFAM: porin, Gram-negative type; KEGG: ppr:PBPRA1012 OmpH porin-like protein H precursor YP_960741.1 KEGG: vpa:VPA1584 hypothetical protein YP_960742.1 KEGG: abo:ABO_0289 hypothetical protein YP_960743.1 PFAM: Ferritin, Dps family protein; KEGG: ilo:IL2352 ferritin-like DNA-binding protein YP_960744.1 KEGG: vvy:VV2913 predicted membrane protein YP_960745.1 Catalyzes the oxidation of dihydrolipoamide to lipoamide YP_960746.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pfl:PFL_5120 transporter, LysE family YP_960747.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive YP_960748.1 PFAM: NolW domain protein; KEGG: hch:HCH_00903 hypothetical protein YP_960749.1 PFAM: heat shock protein DnaJ domain protein; KEGG: mag:amb0578 hypothetical protein YP_960750.1 PFAM: protein of unknown function UPF0074; regulatory proteins, IclR; Helix-turn-helix, type 11 domain protein; KEGG: mfa:Mfla_2558 transcriptional regulator, IclR family YP_960751.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bur:Bcep18194_B1193 secretion protein, HlyD family YP_960752.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: bur:Bcep18194_B1194 hydrophobe/amphiphile efflux pump, HAE1 family YP_960753.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: noc:Noc_0200 secretion protein HlyD YP_960754.1 PFAM: acriflavin resistance protein; KEGG: noc:Noc_0201 acriflavin resistance protein YP_960755.1 SMART: helix-turn-helix- domain containing protein, AraC type; KEGG: pau:PA14_32060 transcriptional regulator XylS YP_960756.1 KEGG: hch:HCH_05569 hypothetical protein YP_960757.1 PFAM: aminotransferase, class I and II; KEGG: aeh:Mlg_2554 aminotransferase, class I and II YP_960758.1 PFAM: inositol monophosphatase; KEGG: hch:HCH_06096 archaeal fructose-1,6-bisphosphatase and related enzyme of inositol monophosphatase family YP_960759.1 FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly YP_960760.1 PFAM: thiazole biosynthesis family protein; KEGG: aeh:Mlg_0034 thiazole biosynthesis family protein YP_960761.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: pfl:PFL_5851 thiamine biosynthesis protein ThiS YP_960762.1 PFAM: protein of unknown function DUF423; KEGG: pat:Patl_2201 protein of unknown function DUF423 YP_960763.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP YP_960764.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_960765.1 KEGG: pfo:Pfl_5134 pyridoxal phosphate biosynthetic protein PdxA; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA YP_960766.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: hch:HCH_06105 parvulin-like peptidyl-prolyl isomerase YP_960767.1 PFAM: Organic solvent tolerance protein; KEGG: hch:HCH_06106 organic solvent tolerance protein OstA YP_960768.1 PFAM: aminoglycoside phosphotransferase; KEGG: hch:HCH_06108 predicted phosphotransferase related to Ser/Thr protein kinase YP_960769.1 PFAM: Nucleotidyl transferase; KEGG: pfo:Pfl_5130 nucleotidyl transferase YP_960770.1 PFAM: heat shock protein DnaJ domain protein; KEGG: sdy:SDY_0080 putative DNA-binding protein YP_960772.1 PFAM: ribulose-phosphate 3-epimerase; KEGG: hch:HCH_06112 ribulose-phosphate 3-epimerase YP_960773.1 KEGG: ppu:PP_0416 phosphoglycolate phosphatase; TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase YP_960774.1 KEGG: hch:HCH_06125 anthranilate synthase component I; TIGRFAM: anthranilate synthase component I; PFAM: Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein YP_960775.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity YP_960776.1 TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase, family 3; KEGG: abo:ABO_2025 anthranilate phosphoribosyltransferase YP_960777.1 PFAM: Indole-3-glycerol phosphate synthase; KEGG: pae:PA0651 indole-3-glycerol-phosphate synthase YP_960778.1 PFAM: multi antimicrobial extrusion protein MatE; KEGG: cpf:CPF_1735 MATE efflux family protein YP_960779.1 PFAM: IucA/IucC family protein; KEGG: bcl:ABC1947 siderophore biosynthesis protein YP_960780.1 PFAM: IucA/IucC family protein; KEGG: rpa:RPA2389 possible rhizobactin siderophore biosynthesis protein RhsF YP_960781.1 activates fatty acids by binding to coenzyme A YP_960782.1 KEGG: rpb:RPB_4395 hypothetical protein YP_960783.1 KEGG: bcl:ABC1951 hypothetical protein YP_960784.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rpa:RPA2386 hypothetical protein YP_960785.1 KEGG: hch:HCH_01311 hypothetical protein YP_960786.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_1696 ABC transporter related YP_960787.1 PFAM: transport system permease protein; ABC-3 protein; KEGG: pfl:PFL_3501 heme/hemin ABC transporter, permease protein YP_960788.1 KEGG: bam:Bamb_1693 ABC-type Fe3+-hydroxamate transport system periplasmic component-like protein YP_960789.1 TIGRFAM: TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pat:Patl_3414 TonB-dependent receptor YP_960790.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: pat:Patl_3412 periplasmic sensor signal transduction histidine kinase YP_960791.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pat:Patl_3411 two component transcriptional regulator, winged helix family YP_960792.1 KEGG: sde:Sde_1463 glutamyl-tRNA synthetase YP_960793.1 PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: pat:Patl_3984 glutathione S-transferase-like YP_960794.1 KEGG: mca:MCA0369 hydrolase, alpha/beta fold family YP_960795.1 KEGG: abo:ABO_1928 hypothetical protein YP_960796.1 KEGG: bba:Bd1057 ABC transporter, periplasmic domain YP_960797.1 PFAM: protein of unknown function DUF306, Meta and HslJ; KEGG: ilo:IL2392 probable secreted protein containing HslJ-like protein YP_960798.1 PFAM: protein of unknown function DUF306, Meta and HslJ; KEGG: sit:TM1040_1898 twin-arginine translocation pathway signal YP_960799.1 PFAM: Glutathione S-transferase, N-terminal domain; KEGG: hch:HCH_01621 glutathione S-transferase YP_960800.1 PFAM: alpha/beta hydrolase fold; KEGG: pfl:PFL_4600 hydrolase, alpha/beta fold family YP_960801.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: dps:DP0457 probable molybdenum ABC transporter, substrate binding periplasmic protein (ModA) YP_960802.1 TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pau:PA14_40410 molybdenum transport protein ModB YP_960803.1 KEGG: mca:MCA1380 molybdenum ABC transporter, ATP-binding protein; TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase YP_960804.1 PFAM: alpha/beta hydrolase fold; KEGG: pae:PA3324 short chain dehydrogenase YP_960805.1 PFAM: von Willebrand factor, type A; protein of unknown function DUF1555; KEGG: ter:Tery_1039 hypothetical protein YP_960806.1 complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons YP_960807.1 PFAM: OsmC family protein; KEGG: abo:ABO_2022 hypothetical protein YP_960808.1 S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine YP_960809.1 PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: abo:ABO_0025 pirin family protein YP_960810.1 PFAM: phosphoribulokinase/uridine kinase; KEGG: hch:HCH_06138 phosphoribulokinase YP_960811.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; type IV pilus assembly PilZ; protein of unknown function DUF1631; KEGG: hch:HCH_01032 predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain YP_960812.1 KEGG: rme:Rmet_3150 putative zinc protease protein YP_960813.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis YP_960814.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis YP_960815.1 KEGG: hch:HCH_01028 hypothetical protein YP_960816.1 KEGG: hch:HCH_01027 acetylglutamate kinase; TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase YP_960817.1 PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: hch:HCH_01025 phosphomannomutase YP_960818.1 KEGG: pau:PA14_70260 deoxyuridine 5'-triphosphate nucleotidohydrolase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase YP_960819.1 KEGG: shm:Shewmr7_0358 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein YP_960820.1 PFAM: DNA repair protein RadC; KEGG: noc:Noc_0236 DNA repair protein RadC YP_960821.1 required for 70S ribosome assembly YP_960822.1 PFAM: ribosomal protein L33; KEGG: csa:Csal_2970 ribosomal protein L33 YP_960823.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: hch:HCH_01017 metal-dependent hydrolase YP_960824.1 PFAM: DSBA oxidoreductase; KEGG: noc:Noc_0551 DsbA oxidoreductase YP_960825.1 PFAM: cytochrome c, class I; KEGG: pau:PA14_72460 cytochrome c4 precursor YP_960826.1 PFAM: GTP-binding protein, HSR1-related; KEGG: abo:ABO_2652 GTP-binding protein YP_960827.1 PFAM: regulatory protein, TetR; KEGG: hch:HCH_01013 transcriptional regulator YP_960828.1 PFAM: aldehyde dehydrogenase; KEGG: hch:HCH_01011 NAD-dependent aldehyde dehydrogenase YP_960829.1 KEGG: pau:PA14_04790 hypothetical protein YP_960830.1 PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: rme:Rmet_3596 glucose-methanol-choline oxidoreductase YP_960831.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_960832.1 KEGG: ppr:PBPRA1213 hypothetical protein YP_960833.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate YP_960834.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_960835.1 KEGG: hch:HCH_01001 hypothetical protein YP_960837.1 PFAM: regulatory protein, TetR; KEGG: hch:HCH_00999 transcriptional regulator YP_960838.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: ilo:IL1542 acyl-CoA dehydrogenase YP_960839.1 KEGG: pcr:Pcryo_1963 protein of unknown function DUF503 YP_960840.1 PFAM: Pyridoxal-dependent decarboxylase; KEGG: hch:HCH_00996 glutamate decarboxylase and related PLP-dependent protein YP_960841.1 KEGG: hch:HCH_00885 hypothetical protein YP_960842.1 PFAM: phosphate transporter; KEGG: hch:HCH_00788 phosphate/sulphate permease YP_960843.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: hch:HCH_00786 response regulator containing a CheY-like receiver domain and a GGDEF domain YP_960844.1 PFAM: flavodoxin/nitric oxide synthase; KEGG: hch:HCH_00784 flavodoxins YP_960845.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Diverse 7TM receptor, extracellular region 2; Diverse 7TM receptor, transmembrane region; KEGG: hch:HCH_00783 predicted signal transduction protein containing sensor and EAL domains YP_960846.1 PFAM: acyl-CoA thioesterase; KEGG: hch:HCH_00781 acyl-CoA thioesterase II YP_960847.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: hch:HCH_00777 NAD(P)H-nitrite reductase YP_960848.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: hch:HCH_00776 rubredoxin YP_960849.1 Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively YP_960850.1 PFAM: Chorismate lyase; KEGG: pau:PA14_70720 chorismate-pyruvate lyase YP_960851.1 TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; KEGG: csa:Csal_3252 4-hydroxybenzoate polyprenyl transferase YP_960852.1 TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pst:PSPTO_5477 phosphate regulon transcriptional regulatory protein PhoB YP_960853.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold domain protein; KEGG: hch:HCH_00770 signal transduction histidine kinase YP_960854.1 PFAM: response regulator receiver; KEGG: hch:HCH_00769 FOG: CheY-like receiver YP_960855.1 TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: hch:HCH_02605 membrane-bound lytic murein transglycosylase B YP_960856.1 PFAM: protein of unknown function DUF1555; KEGG: shm:Shewmr7_3642 putative outer membrane adhesin like protein YP_960857.1 PFAM: membrane-bound metal-dependent hydrolase; KEGG: abo:ABO_2484 hypothetical protein YP_960858.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: abo:ABO_2537 pseudouridylate synthase YP_960859.1 KEGG: sal:Sala_0464 asparaginase YP_960860.1 PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; KEGG: aeh:Mlg_2349 peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 YP_960861.1 PFAM: EAL domain protein; Diverse 7TM receptor, transmembrane region; KEGG: hch:HCH_00783 predicted signal transduction protein containing sensor and EAL domains YP_960862.1 PFAM: PAAR repeat-containing protein; KEGG: vch:VCA0284 hypothetical protein YP_960863.1 PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: pae:PA3613 hypothetical protein YP_960864.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; KEGG: aeh:Mlg_1025 ATPase, P-type (transporting), HAD superfamily, subfamily IC YP_960865.1 PFAM: Alkaline phosphatase; KEGG: hch:HCH_01191 phosphodiesterase/alkaline phosphatase D YP_960866.1 PFAM: protein of unknown function DUF1282; KEGG: sde:Sde_3158 rod shape-determining protein MreC, subtype YP_960867.1 PFAM: dienelactone hydrolase; KEGG: gme:Gmet_0790 dienelactone hydrolase YP_960868.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: cps:CPS_4529 cold-shock DNA-binding domain family protein YP_960869.1 TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: csa:Csal_2589 CrcB protein YP_960870.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA YP_960871.1 transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA YP_960872.1 PFAM: protein of unknown function DUF540; KEGG: hch:HCH_00768 uncharacterized protein involved in cysteine biosynthesis YP_960873.1 PFAM: VanZ family protein; KEGG: reu:Reut_A1376 VanZ like protein YP_960874.1 PFAM: Methyltransferase type 12; KEGG: hch:HCH_00765 predicted methyltransferase YP_960875.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA YP_960876.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pha:PSHAa0948 hypothetical protein YP_960877.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: hch:HCH_00762 hypothetical protein YP_960878.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: hch:HCH_00760 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductase YP_960879.1 PFAM: histidine triad (HIT) protein; KEGG: hch:HCH_00759 diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase YP_960880.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; KEGG: abo:ABO_1022 hemolysin, putative YP_960881.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: hch:HCH_00754 phosphate transport system regulatory protein PhoU YP_960882.1 KEGG: abo:ABO_2682 phosphate ABC transporter ATP-binding protein; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_960883.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: abo:ABO_2683 phosphate ABC transporter permease protein YP_960884.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: abo:ABO_2684 phosphate ABC transporter permease protein YP_960885.1 KEGG: abo:ABO_2685 phosphate ABC transporter periplasmic binding protein YP_960886.1 PFAM: thioesterase superfamily protein; KEGG: hch:HCH_00745 acyl-CoA hydrolase YP_960887.1 PFAM: glycosyl transferase, group 1; KEGG: aeh:Mlg_1606 glycosyl transferase, group 1 YP_960888.1 PFAM: major facilitator superfamily MFS_1; KEGG: ilo:IL2408 permease of the major facilitator superfamily YP_960889.1 PFAM: conserved hypothetical protein 245; KEGG: aeh:Mlg_0076 conserved hypothetical protein 245 YP_960890.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aeh:Mlg_0077 ABC transporter related YP_960891.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sde:Sde_0124 short chain dehydrogenase family protein YP_960892.1 PFAM: major facilitator superfamily MFS_1; KEGG: sfr:Sfri_4001 major facilitator superfamily MFS_1 YP_960893.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate YP_960894.1 PFAM: regulatory protein, ArsR; KEGG: psb:Psyr_1504 regulatory protein, ArsR YP_960895.1 PFAM: NADPH-dependent FMN reductase; KEGG: abo:ABO_2677 arsenical resistance protein ArsH YP_960896.1 TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: aeh:Mlg_2709 bile acid:sodium symporter YP_960897.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_960898.1 unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair. YP_960899.1 KEGG: sfr:Sfri_2331 methyl-accepting chemotaxis sensory transducer YP_960900.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: sfr:Sfri_2331 methyl-accepting chemotaxis sensory transducer YP_960901.1 KEGG: sdn:Sden_1599 hypothetical protein YP_960902.1 KEGG: sdn:Sden_1598 ABC-type phosphate transport system, periplasmic component YP_960903.1 PFAM: aldehyde dehydrogenase; KEGG: aeh:Mlg_0875 succinate-semialdehyde dehydrogenase (NAD(P)(+)) YP_960904.1 PFAM: histone deacetylase superfamily; KEGG: aeh:Mlg_1020 histone deacetylase superfamily YP_960905.1 Required for the synthesis of the thiazole moiety YP_960906.1 PFAM: conserved hypothetical protein 730; KEGG: hch:HCH_00651 predicted Rossmann fold nucleotide-binding protein YP_960907.1 PFAM: cytochrome c, class I; KEGG: vvy:VV2537 cytochrome c553 YP_960908.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ilo:IL0868 enoyl-CoA hydratase/isomerase family protein YP_960909.1 KEGG: hch:HCH_00625 FOG: ankyrin repeat YP_960910.1 PFAM: GCN5-related N-acetyltransferase; protein of unknown function DUF699, ATPase putative; SMART: AAA ATPase; KEGG: aeh:Mlg_1022 protein of unknown function DUF699, ATPase putative YP_960911.1 PFAM: UvrD/REP helicase; KEGG: hch:HCH_00593 superfamily I DNA and RNA helicase YP_960912.1 PFAM: Thrombospondin type 3 repeat; OmpA/MotB domain protein; OmpF family protein; KEGG: hch:HCH_00763 outer membrane protein and related peptidoglycan-associated (LipO)protein YP_960913.1 KEGG: hch:HCH_04645 SAM-dependent methyltransferase YP_960914.1 member of the SPOUT superfamily of methyltransferases YP_960915.1 PFAM: FAD dependent oxidoreductase; KEGG: rsp:RSP_3113 D-amino acid dehydrogenase small subunit YP_960916.1 PFAM: protein of unknown function DUF344; KEGG: bur:Bcep18194_A6457 protein of unknown function DUF344 YP_960917.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: bba:Bd1042 TatD related DNase YP_960918.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: cvi:CV0368 hypothetical protein YP_960919.1 TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Pi-cotransporter; KEGG: hch:HCH_00018 Na+/phosphate symporter YP_960920.1 KEGG: dar:Daro_3099 PAS:GGDEF; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_960921.1 KEGG: eba:ebA6324 predicted substrate-binding protein involved in ABC-type nitrate/sulfonate/bicarbonate transport system YP_960922.1 PFAM: protein of unknown function DUF340, membrane; KEGG: vvy:VV1444 predicted membrane protein YP_960923.1 KEGG: hch:HCH_05060 hypothetical protein YP_960924.1 KEGG: hch:HCH_05741 FOG: CheY-like receiver YP_960925.1 PFAM: response regulator receiver; HDOD; KEGG: pfl:PFL_0187 response regulator YP_960926.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; Hpt domain protein; KEGG: mag:amb3006 response regulator containing a CheY-like receiver domain and a GGDEF domain YP_960927.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: hch:HCH_04668 signal transduction histidine kinase YP_960928.1 PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; KEGG: dar:Daro_2378 PAS YP_960929.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; CHASE domain protein; KEGG: hch:HCH_00809 signal transduction histidine kinase YP_960930.1 TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain protein; KEGG: csa:Csal_2962 aconitate hydratase 1 YP_960931.1 KEGG: pat:Patl_2249 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; MHYT domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_960932.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: sfr:Sfri_2505 response regulator receiver modulated metal dependent phosphohydrolase YP_960933.1 KEGG: hch:HCH_02671 hypothetical protein YP_960934.1 PFAM: Rhomboid family protein; KEGG: hch:HCH_02672 uncharacterized membrane protein YP_960935.1 PFAM: OmpA/MotB domain protein; KEGG: hch:HCH_05015 outer membrane protein and related peptidoglycan-associated (LipO)protein YP_960936.1 PFAM: membrane-associated proteins in eicosanoid and glutathione metabolism (MAPEG); KEGG: sfr:Sfri_0395 hypothetical protein YP_960937.1 PFAM: Transglycosylase-associated protein; KEGG: csa:Csal_1287 transglycosylase-associated protein YP_960938.1 KEGG: pfo:Pfl_1743 1-acyl-sn-glycerol-3-phosphate acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase YP_960939.1 TIGRFAM: sortase family protein; PFAM: peptidase C60, sortase A and B; KEGG: sde:Sde_0123 sortase (surface protein transpeptidase)-like YP_960940.1 PFAM: von Willebrand factor, type A; Vault protein inter-alpha-trypsin domain protein; SMART: Vault protein inter-alpha-trypsin, metazoa; KEGG: hch:HCH_00089 uncharacterized protein containing a von Willebrand factor type A (vWA) domain YP_960941.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sde:Sde_1016 response regulator receiver domain protein (CheY-like) YP_960942.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: hch:HCH_04354 signal transduction histidine kinase YP_960943.1 KEGG: cps:CPS_1702 hypothetical protein YP_960944.1 PFAM: protein of unknown function DUF815; SMART: AAA ATPase; KEGG: hch:HCH_05795 predicted ATPase (AAA+ superfamily) YP_960945.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; extracellular solute-binding protein, family 3; KEGG: she:Shewmr4_0697 diguanylate cyclase YP_960946.1 TIGRFAM: cysteine synthases; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: ppu:PP_4571 cysteine synthase A YP_960947.1 PFAM: OmpA domain protein transmembrane region-containing protein; KEGG: sfr:Sfri_0734 OmpA domain protein transmembrane region-containing protein YP_960948.1 KEGG: hch:HCH_00241 hypothetical protein YP_960949.1 KEGG: rha:RHA1_ro05901 hypothetical protein YP_960950.1 PFAM: protein of unknown function DUF785; KEGG: noc:Noc_1082 protein of unknown function DUF785 YP_960951.1 catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA YP_960952.1 KEGG: par:Psyc_1179 hypothetical protein YP_960953.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: noc:Noc_1114 glycerophosphoryl diester phosphodiesterase YP_960954.1 KEGG: vvy:VV3101 hypothetical protein YP_960955.1 KEGG: hch:HCH_00992 ATPase involved in DNA repair YP_960956.1 KEGG: hch:HCH_00991 hypothetical protein YP_960957.1 KEGG: hch:HCH_00989 hypothetical protein YP_960958.1 KEGG: hch:HCH_00988 hypothetical protein YP_960959.1 PFAM: PspA/IM30 family protein; KEGG: sdn:Sden_0697 PspA/IM30 YP_960960.1 KEGG: hch:HCH_00985 hypothetical protein YP_960961.1 PFAM: Rhomboid family protein; KEGG: rsp:RSP_2167 hypothetical protein YP_960962.1 KEGG: pau:PA14_56190 hypothetical protein YP_960963.1 KEGG: pst:PSPTO_0779 hypothetical protein YP_960964.1 PFAM: Integrase, catalytic region; KEGG: hch:HCH_06236 transposase, IS21 family YP_960965.1 PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; SMART: AAA ATPase; KEGG: hch:HCH_06235 IstB helper protein, IS21 family YP_960966.1 KEGG: pst:PSPTO_0779 hypothetical protein YP_960967.1 KEGG: pae:PA5264 hypothetical protein YP_960968.1 PFAM: transposase, IS4 family protein; KEGG: psp:PSPPH_3329 ISPsy2, transposase YP_960970.1 KEGG: pst:PSPTO_0779 hypothetical protein YP_960972.1 KEGG: pst:PSPTO_0779 hypothetical protein YP_960973.1 KEGG: pae:PA5265 hypothetical protein YP_960975.1 PFAM: Rhs element Vgr protein; KEGG: eca:ECA2104 VgrG protein YP_960976.1 PFAM: ImcF domain protein; protein of unknown function DUF1215; KEGG: vch:VCA0120 IcmF-related protein YP_960977.1 PFAM: ImpA domain protein; KEGG: aeh:Mlg_0056 ImpA domain protein YP_960978.1 KEGG: aeh:Mlg_0055 hypothetical protein YP_960979.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: aeh:Mlg_0054 sigma54 specific transcriptional regulator, fis family YP_960980.1 PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: vch:VCA0116 ClpB protein YP_960981.1 KEGG: aeh:Mlg_0053 hypothetical protein YP_960982.1 PFAM: protein of unknown function DUF876; KEGG: vch:VCA0114 hypothetical protein YP_960983.1 KEGG: plu:plu0366 hypothetical protein YP_960984.1 KEGG: eca:ECA3440 hypothetical protein YP_960985.1 PFAM: protein of unknown function DUF1305; KEGG: aeh:Mlg_0049 protein of unknown function DUF1305 YP_960986.1 PFAM: protein of unknown function DUF879; KEGG: vch:VCA0110 hypothetical protein YP_960987.1 PFAM: protein of unknown function DUF1316; KEGG: aeh:Mlg_0047 protein of unknown function DUF1316 YP_960988.1 PFAM: protein of unknown function DUF877; KEGG: vch:VCA0108 hypothetical protein YP_960989.1 PFAM: Uncharacterised conserved protein UCP028301; KEGG: vch:VCA0107 hypothetical protein YP_960990.1 PFAM: acyl-coA-binding protein, ACBP; KEGG: hch:HCH_00589 acyl-CoA-binding protein YP_960991.1 KEGG: hch:HCH_00588 integrase YP_960993.1 TIGRFAM: transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: hch:HCH_00585 transcription elongation factor GreB YP_960994.1 KEGG: hch:HCH_00581 hypothetical protein YP_960995.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: hch:HCH_00580 signal transduction histidine kinase YP_960996.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: hch:HCH_00579 response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain YP_960997.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: abo:ABO_1233 hydroxypyruvate isomerase YP_960998.1 PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: abo:ABO_1232 2-hydroxy-3-oxopropionate reductase YP_960999.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters YP_961000.1 PFAM: protein of unknown function DUF214; KEGG: aeh:Mlg_2661 protein of unknown function DUF214 YP_961001.1 KEGG: hch:HCH_00573 predicted ATPase involved in cell division; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase YP_961002.1 KEGG: pau:PA14_04900 signal recognition particle receptor FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase YP_961003.1 TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: yps:YPTB0220 putative methylase YP_961004.1 PFAM: fatty acid desaturase; KEGG: hch:HCH_00568 fatty-acid desaturase YP_961005.1 KEGG: hch:HCH_00567 formamidopyrimidine-DNA glycosylase; TIGRFAM: formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycolase YP_961006.1 KEGG: hch:HCH_00566 hypothetical protein YP_961007.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: tbd:Tbd_0839 HAD-superfamily hydrolase subfamily IA, variant 3 YP_961008.1 PFAM: RNA-binding S4 domain protein; KEGG: hch:HCH_00563 ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) YP_961009.1 PFAM: Hsp33 protein; KEGG: pae:PA5193 heat shock protein HSP33 YP_961010.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP YP_961011.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: bpa:BPP2886 transposase YP_961012.1 PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: hch:HCH_00560 probable membrane protein, transporter-related YP_961013.1 KEGG: hch:HCH_00558 hypothetical protein YP_961014.1 PFAM: histone family protein DNA-binding protein; KEGG: hch:HCH_00556 bacterial nucleoid DNA-binding protein YP_961015.1 KEGG: hch:HCH_00559 hypothetical protein YP_961016.1 TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; KEGG: pfl:PFL_5834 dihydroorotase, multifunctional complex type YP_961017.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_961018.1 PFAM: phosphoribosyltransferase; KEGG: hch:HCH_00552 pyrimidine operon attenuation protein/uracil phosphoribosyltransferase YP_961019.1 PFAM: Holliday junction resolvase YqgF; SMART: Resolvase, RNase H domain protein fold; KEGG: eca:ECA3926 putative Holliday junction resolvase YP_961020.1 PFAM: protein of unknown function DUF179; KEGG: hch:HCH_00550 putative transcriptional regulator YP_961021.1 TIGRFAM: TonB family protein; KEGG: hch:HCH_00548 periplasmic protein TonB, links inner and outer membranes YP_961022.1 KEGG: hch:HCH_00547 glutathione synthetase; TIGRFAM: glutathione synthetase; PFAM: glutathione synthetase domain protein; glutathione synthetase, ATP-binding; RimK domain protein ATP-grasp YP_961023.1 PFAM: response regulator receiver; KEGG: hch:HCH_00546 FOG: CheY-like receiver YP_961024.1 PFAM: response regulator receiver; KEGG: hch:HCH_00545 FOG: CheY-like receiver YP_961025.1 PFAM: CheW domain protein; KEGG: hch:HCH_00544 chemotaxis signal transduction protein YP_961026.1 PFAM: chemotaxis sensory transducer; KEGG: hch:HCH_00543 methyl-accepting chemotaxis protein YP_961027.1 PFAM: MCP methyltransferase, CheR-type; KEGG: hch:HCH_00542 methylase of chemotaxis methyl-accepting protein YP_961028.1 PFAM: response regulator receiver; CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: pae:PA0413 still frameshift probable component of chemotactic signal transduction system YP_961029.1 PFAM: CheB methylesterase; KEGG: hch:HCH_00540 chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain YP_961030.1 PFAM: CheW domain protein; KEGG: hch:HCH_00539 protein containing CheW-like domain YP_961031.1 PFAM: ferric-uptake regulator; KEGG: pfl:PFL_0078 transcriptional regulator, Fur family YP_961032.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: psp:PSPPH_0264 zinc ABC transporter, ATP-binding protein YP_961033.1 PFAM: ABC-3 protein; KEGG: pau:PA14_72590 permease of ABC zinc transporter ZnuB YP_961034.1 SMART: PAS domain containing protein YP_961035.1 KEGG: pau:PA14_29690 hypothetical protein YP_961036.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: vvy:VV2684 GGDEF family protein YP_961037.1 PFAM: alpha/beta hydrolase fold; KEGG: pfl:PFL_0960 hydrolase, alpha/beta fold family YP_961038.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_961039.1 catalyzes the formation of dihydromonapterin triphosphate from dihydroneopterin triphosphate YP_961040.1 PFAM: CoA-binding domain protein; KEGG: plu:plu1781 hypothetical protein YP_961041.1 KEGG: hch:HCH_02459 HD-GYP domain; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region YP_961042.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: hch:HCH_00344 predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain YP_961044.1 PFAM: regulatory protein, MerR; KEGG: hch:HCH_06734 predicted transcriptional regulator YP_961045.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: abo:ABO_2353 Cu(I)-exporting ATPase YP_961046.1 PFAM: protein of unknown function DUF411; KEGG: abo:ABO_2356 predicted metal-binding protein YP_961047.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; KEGG: rpa:RPA1296 putative diguanylate cyclase (GGDEF) with HAMP domain YP_961048.1 KEGG: hch:HCH_06838 exoribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B, OB region N-terminal domain; SMART: Cold shock protein YP_961049.1 KEGG: hch:HCH_04225 hypothetical protein YP_961050.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: hch:HCH_02048 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_961051.1 PFAM: alpha/beta hydrolase fold; KEGG: abo:ABO_2214 polyhydroxyalkanoate synthase YP_961052.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bja:bll2332 transcriptional regulatory protein YP_961053.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: mag:amb0291 permease of the major facilitator superfamily YP_961054.1 PFAM: Redoxin domain protein; KEGG: pfl:PFL_2858 thiol peroxidase YP_961055.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: aeh:Mlg_1639 MATE efflux family protein YP_961056.1 KEGG: bxe:Bxe_B2091 hypothetical protein YP_961057.1 PFAM: NUDIX hydrolase; beta-lactamase domain protein; KEGG: reu:Reut_B4249 NUDIX hydrolase:beta-lactamase-like YP_961058.1 PFAM: protein of unknown function UPF0057; KEGG: rxy:Rxyl_0694 protein of unknown function UPF0057 YP_961059.1 PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: sde:Sde_0100 deacylase-like YP_961060.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: aeh:Mlg_0716 protein of unknown function DUF6, transmembrane YP_961061.1 PFAM: Carbohydrate-binding family V/XII; KEGG: hch:HCH_01957 probable glycosyl hydrolase YP_961062.1 PFAM: aminotransferase, class I and II; KEGG: mca:MCA1021 aminotransferase, classes I and II YP_961063.1 PFAM: Auxin Efflux Carrier; KEGG: dar:Daro_0205 auxin efflux carrier YP_961064.1 PFAM: UbiA prenyltransferase; KEGG: aeh:Mlg_1759 UbiA prenyltransferase YP_961065.1 PFAM: chemotaxis sensory transducer; KEGG: pst:PSPTO_3685 methyl-accepting chemotaxis protein YP_961066.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: hch:HCH_04437 acyl-CoA dehydrogenase YP_961067.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: vpa:VPA0315 putative transcriptional regulator, LysR family YP_961068.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: vpa:VPA0314 hypothetical protein YP_961069.1 PFAM: ChaC family protein; KEGG: ilo:IL2170 uncharacterized protein involved in cation transport YP_961070.1 PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: dde:Dde_1840 multiple antibiotic resistance (MarC)-related protein YP_961071.1 catalyzes the synthesis of pseudouridine from U-2604 in the 23S ribosomal RNA YP_961072.1 PFAM: Sterol desaturase; KEGG: rso:RS01698 probable transmembrane protein YP_961073.1 KEGG: chu:CHU_0664 hypothetical protein YP_961074.1 KEGG: pfo:Pfl_5597 rhs element Vgr protein YP_961075.1 KEGG: rme:Rmet_3598 flavin-containing monooxygenase FMO YP_961076.1 PFAM: regulatory protein, TetR; KEGG: pau:PA14_44540 hypothetical protein YP_961078.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: abo:ABO_2039 oxidoreductase, FMN-binding YP_961079.1 PFAM: helix-turn-helix, HxlR type; KEGG: abo:ABO_2040 hypothetical protein YP_961080.1 PFAM: OmpW family protein; KEGG: pst:PSPTO_0679 outer membrane protein OmpW YP_961081.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: ppr:PBPRB1232 putative ATP-dependent RNA helicase RhlE YP_961082.1 PFAM: Redoxin domain protein; KEGG: pau:PA14_32600 probable thiol:disulfide interchange protein YP_961083.1 KEGG: rru:Rru_A2561 hypothetical protein YP_961084.1 PFAM: regulatory protein, MerR; KEGG: ppu:PP_3841 transcriptional regulator, MerR family YP_961085.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: pfl:PFL_2354 hypothetical protein YP_961086.1 KEGG: abo:ABO_0282 monooxygenase, flavin-binding family YP_961087.1 KEGG: nmu:Nmul_A2196 hypothetical protein YP_961088.1 PFAM: transposase, IS4 family protein; KEGG: psp:PSPPH_3329 ISPsy2, transposase YP_961089.1 KEGG: csa:Csal_2472 hypothetical protein YP_961090.1 PFAM: histone deacetylase superfamily; KEGG: rde:RD1_4135 acetylpolyamine aminohydrolase YP_961091.1 KEGG: hch:HCH_00210 ABC-type sugar transport system, periplasmic component YP_961092.1 KEGG: pfl:PFL_1770 hypothetical protein YP_961093.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rru:Rru_A1417 thioredoxin-disulfide reductase YP_961094.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: abo:ABO_2431 alkyl hydroperoxide reductase, C subunit YP_961095.1 KEGG: sfr:Sfri_1945 putative transporter, BCCT family protein YP_961096.1 catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine YP_961097.1 catalyzes the formation of betaine from betaine aldehyde YP_961098.1 HTH-type; bet1; Repressor involved in choline regulation of the bet genes YP_961099.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: gme:Gmet_3284 enoyl-CoA hydratase/isomerase YP_961100.1 PFAM: GGDEF domain containing protein; EAL domain protein; Diverse 7TM receptor, extracellular region 2; Diverse 7TM receptor, transmembrane region; KEGG: hch:HCH_00783 predicted signal transduction protein containing sensor and EAL domains YP_961101.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: csa:Csal_2364 glutathione-dependent formaldehyde-activating, GFA YP_961102.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: vvu:VV21595 sensor histidine kinase YP_961104.1 KEGG: pat:Patl_0861 hypothetical protein YP_961105.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: eca:ECA2819 hypothetical protein YP_961106.1 KEGG: pat:Patl_1413 virulence gene repressor RsaL YP_961107.1 KEGG: pat:Patl_4068 hypothetical protein YP_961108.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: ana:alr0058 D-lactate dehydrogenase YP_961109.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bte:BTH_II1690 LysE family protein, putative YP_961110.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: pfo:Pfl_2165 transcriptional regulator, AraC family YP_961111.1 PFAM: ribonucleotide reductase; KEGG: hch:HCH_06928 ribonucleotide reductase, beta subunit YP_961112.1 Catalyzes the rate-limiting step in dNTP synthesis YP_961113.1 KEGG: sru:SRU_1591 hypothetical protein YP_961114.1 KEGG: sde:Sde_2969 putative formamidase regulatory protein FmdB YP_961115.1 PFAM: Acetamidase/Formamidase; KEGG: abo:ABO_1978 formamidase YP_961116.1 PFAM: ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: abo:ABO_1979 chaperone-associated ATPase, putative YP_961117.1 aliphatic amidase; catalyzes the hydrolysis of short-chain aliphatic amides to their organic acids and can also transfer the acyl moiety of short-chain amides to hydroxylamine to form hydroxamates YP_961118.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: abo:ABO_1981 amino acid ABC transporter, ATP-binding protein, putative YP_961119.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: abo:ABO_1982 branched-chain amino acid ABC transporter, ATP-binding prote YP_961120.1 PFAM: inner-membrane translocator; KEGG: abo:ABO_1983 branched-chain amino acid ABC transporter,permease protein YP_961121.1 PFAM: inner-membrane translocator; KEGG: abo:ABO_1984 branched-chain amino acid ABC transporter,permease protein YP_961122.1 PFAM: Extracellular ligand-binding receptor; KEGG: abo:ABO_1985 ABC transporter, periplasmic substrate-binding protein YP_961123.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: abo:ABO_1986 two-component sensor histidine kinase protein, putative YP_961124.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: sde:Sde_2977 response regulator receiver domain protein (CheY-like) YP_961125.1 KEGG: hch:HCH_00277 ABC-type amino acid transport/signal transduction system, periplasmic component/domain YP_961126.1 involved in regulation of intracellular pH under alkaline conditions YP_961127.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_961128.1 KEGG: sde:Sde_3959 UDP-N-acetylglucosamine diphosphorylase; TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; transferase hexapeptide repeat containing protein; Nucleotidyl transferase YP_961129.1 TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: H+-transporting two-sector ATPase, delta/epsilon subunit; KEGG: hch:HCH_07070 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) YP_961130.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_961131.1 KEGG: hch:HCH_07072 F0F1-type ATP synthase, gamma subunit; TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+-transporting two-sector ATPase, gamma subunit YP_961132.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_961133.1 TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+-transporting two-sector ATPase, delta (OSCP) subunit; KEGG: sde:Sde_3969 helix-turn-helix, AraC type YP_961134.1 TIGRFAM: ATP synthase F0, B subunit; PFAM: H+-transporting two-sector ATPase, B/B' subunit; KEGG: hch:HCH_07076 F0F1-type ATP synthase, subunit B YP_961135.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0 YP_961136.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_961137.1 PFAM: ATP synthase I chain; KEGG: hch:HCH_10033 F0F1-type ATP synthase, subunit I YP_961138.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: hch:HCH_07080 predicted transcriptional regulator YP_961139.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: hch:HCH_07081 ParA family protein YP_961140.1 TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: psb:Psyr_5131 glucose inhibited division protein YP_961141.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_961142.1 PFAM: EAL domain protein; KEGG: bur:Bcep18194_A6290 diguanylate phosphodiesterase (EAL domain) YP_961143.1 PFAM: acriflavin resistance protein; KEGG: aeh:Mlg_1187 acriflavin resistance protein YP_961144.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: abo:ABO_2747 RND efflux membrane fusion protein, putative YP_961145.1 KEGG: sde:Sde_2838 lipoprotein, putative YP_961146.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pae:PA1284 probable acyl-CoA dehydrogenase YP_961147.1 TIGRFAM: ectoine hydroxylase; PFAM: Phytanoyl-CoA dioxygenase; KEGG: csa:Csal_3003 ectoine hydroxylase YP_961148.1 KEGG: hch:HCH_04883 ABC-type amino acid transport/signal transduction system, periplasmic component/domain YP_961149.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_961150.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria YP_961151.1 PFAM: protein of unknown function DUF37; KEGG: pen:PSEEN5557 hypothetical protein YP_961152.1 TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: csa:Csal_3317 ribonuclease P protein component YP_961153.1 in Escherichia coli transcription of this gene is enhanced by polyamines