-- dump date 20140619_135647 -- class Genbank::CDS -- table cds_note -- id note YP_005093729.1 PFAM: Sigma-70, region 4 YP_005093730.1 PFAM: Transcriptional Coactivator p15 (PC4) YP_005093731.1 PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family YP_005093735.1 PFAM: CHC2 zinc finger; DnaB-like helicase C terminal domain YP_005093739.1 PFAM: PemK-like protein YP_005093741.1 IMG reference gene:2509101791_SP YP_005095759.1 PFAM: domain; Bacterial dnaA protein; TIGRFAM: chromosomal replication initiator protein DnaA YP_005095760.1 PFAM: Peptide methionine sulfoxide reductase; TIGRFAM: methionine-S-sulfoxide reductase YP_005095761.1 PFAM: Nitroreductase family; TIGRFAM: SagB-type dehydrogenase domain YP_005095763.1 PFAM: Endonuclease V YP_005095764.1 PFAM: YgbB family; TIGRFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_005095765.1 PFAM: DNA polymerase III beta subunit, C-terminal domain; DNA polymerase III beta subunit, N-terminal domain; DNA polymerase III beta subunit, central domain; TIGRFAM: DNA polymerase III, beta subunit YP_005095766.1 PFAM: Glycerophosphoryl diester phosphodiesterase family YP_005095767.1 PFAM: Rubrerythrin YP_005095768.1 PFAM: Protein of unknown function, DUF400 YP_005095769.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_005095770.1 PFAM: PhoH-like protein; manually curated; non-canonical start codon YP_005095771.1 PFAM: HD domain; 7TM receptor with intracellular HD hydrolase; TIGRFAM: uncharacterized domain HDIG YP_005095772.1 PFAM: Uncharacterized protein family UPF0054; TIGRFAM: metalloprotein, YbeY/UPF0054 family YP_005095773.1 PFAM: Protein of unknown function (DUF1015) YP_005095774.1 PFAM: C4-dicarboxylate transporter/malic acid transport protein; TIGRFAM: C4-dicarboxylate transporter/malic acid transport protein YP_005095775.1 PFAM: Bacterial regulatory protein, arsR family YP_005095776.1 PFAM: SirA-like protein YP_005095777.1 PFAM: YeeE/YedE family (DUF395) YP_005095778.1 PFAM: Rhodanese-like domain YP_005095779.1 PFAM: DsrE/DsrF-like family YP_005095781.1 PFAM: DsrH like protein; TIGRFAM: sulfur relay protein TusB/DsrH YP_005095782.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; TIGRFAM: dihydrolipoamide dehydrogenase YP_005095783.1 PFAM: Bacterial regulatory protein, arsR family; SirA-like protein YP_005095784.1 PFAM: Sugar fermentation stimulation protein; TIGRFAM: sugar fermentation stimulation protein YP_005095785.1 PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG YP_005095786.1 PFAM: Activator of Hsp90 ATPase homolog 1-like protein YP_005095787.1 PFAM: Beta-eliminating lyase YP_005095788.1 PFAM: Predicted permease YP_005095790.1 PFAM: NUDIX domain YP_005095792.1 PFAM: Hydantoinase/oxoprolinase; TIGRFAM: conserved hypothetical protein YP_005095793.1 PFAM: Aminotransferase class I and II YP_005095794.1 PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_005095795.1 PFAM: GGDEF domain YP_005095797.1 PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily; HAD-superfamily hydrolase, subfamily IIB YP_005095798.1 PFAM: Protein of unknown function (DUF2800) YP_005095799.1 PFAM: Type II/IV secretion system protein; Viral (Superfamily 1) RNA helicase; TIGRFAM: DNA helicase, putative YP_005095800.1 PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; TIGRFAM: beta-ketoacyl-acyl-carrier-protein synthase II YP_005095801.1 PFAM: Uncharacterised protein, DegV family COG1307; TIGRFAM: EDD domain protein, DegV family YP_005095802.1 PFAM: FabA-like domain; TIGRFAM: beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ YP_005095803.1 PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III YP_005095804.1 PFAM: 2-nitropropane dioxygenase; TIGRFAM: putative enoyl-(acyl-carrier-protein) reductase II YP_005095805.1 PFAM: Acyl transferase domain; TIGRFAM: malonyl CoA-acyl carrier protein transacylase YP_005095806.1 PFAM: Pyroglutamyl peptidase; TIGRFAM: pyroglutamyl-peptidase I YP_005095807.1 PFAM: Putative transposase, YhgA-like; TIGRFAM: conserved hypothetical protein (putative transposase or invertase) YP_005095808.1 PFAM: DAHP synthetase I family; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase YP_005095809.1 PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase YP_005095810.1 PFAM: Calcineurin-like phosphoesterase YP_005095814.1 PFAM: Phosphoribosyl transferase domain; TIGRFAM: adenine phosphoribosyltransferase YP_005095815.1 PFAM: Phosphoglucose isomerase YP_005095816.1 PFAM: Dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase YP_005095817.1 PFAM: Bacterial extracellular solute-binding protein YP_005095818.1 PFAM: Bacterial regulatory proteins, tetR family YP_005095819.1 PFAM: Phosphate transporter family YP_005095820.1 PFAM: Protein of unknown function DUF47; TIGRFAM: TIGR00153 family protein YP_005095821.1 PFAM: Adenylate and Guanylate cyclase catalytic domain; CHASE2 domain YP_005095822.1 PFAM: HD domain YP_005095823.1 PFAM: Protein of unknown function (DUF3307) YP_005095825.1 PFAM: HD domain; GAF domain; TIGRFAM: uncharacterized domain HDIG YP_005095826.1 PFAM: ATPase family associated with various cellular activities (AAA); DNA polymerase III subunits gamma and tau domain III; TIGRFAM: DNA polymerase III, delta' subunit; DNA polymerase III, subunit gamma and tau YP_005095827.1 PFAM: Glycosyl transferase family 2 YP_005095828.1 PFAM: Ribosome recycling factor; TIGRFAM: ribosome recycling factor YP_005095829.1 PFAM: Putative undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase YP_005095830.1 PFAM: Cytidylyltransferase family YP_005095831.1 PFAM: DHHA1 domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetases class II (A); TIGRFAM: alanine--tRNA ligase YP_005095832.1 PFAM: Citrate transporter YP_005095833.1 PFAM: Glu-tRNAGln amidotransferase C subunit; TIGRFAM: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit YP_005095834.1 PFAM: Uncharacterised protein family UPF0102; TIGRFAM: TIGR00252 family protein YP_005095835.1 PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YP_005095837.1 PFAM: tRNA pseudouridine synthase; TIGRFAM: pseudouridylate synthase I YP_005095839.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005095840.1 PFAM: ABC transporter; NIL domain YP_005095841.1 PFAM: NLPA lipoprotein; TIGRFAM: lipoprotein, YaeC family YP_005095842.1 PFAM: Flagellar FliJ protein; TIGRFAM: flagellar export protein FliJ YP_005095843.1 PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; PAS fold; TIGRFAM: PAS domain S-box YP_005095845.1 PFAM: short chain dehydrogenase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase YP_005095846.1 PFAM: HD domain; TGS domain; Region found in RelA / SpoT proteins; TIGRFAM: (p)ppGpp synthetase, RelA/SpoT family YP_005095847.1 PFAM: D-Tyr-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase YP_005095849.1 PFAM: 3'-5' exonuclease; 5'-3' exonuclease, C-terminal SAM fold; DNA polymerase family A; 5'-3' exonuclease, N-terminal resolvase-like domain; TIGRFAM: DNA polymerase I YP_005095851.1 PFAM: Rho termination factor, N-terminal domain; Rho termination factor, RNA-binding domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: transcription termination factor Rho YP_005095852.1 PFAM: Putative lysophospholipase YP_005095853.1 PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signaling domain YP_005095854.1 PFAM: Amidohydrolase family YP_005095855.1 PFAM: Radical SAM superfamily; TIGRFAM: radical SAM protein, TIGR01212 family YP_005095856.1 PFAM: Rubrerythrin YP_005095857.1 PFAM: Desulfoferrodoxin; TIGRFAM: desulfoferrodoxin ferrous iron-binding domain YP_005095858.1 TIGRFAM: putative iron-only hydrogenase system regulator YP_005095859.1 PFAM: Radical SAM superfamily; Biotin and Thiamin Synthesis associated domain; TIGRFAM: iron-only hydrogenase maturation rSAM protein HydG; thiazole biosynthesis protein ThiH YP_005095860.1 PFAM: Radical SAM superfamily; TIGRFAM: iron-only hydrogenase maturation rSAM protein HydE YP_005095861.1 PFAM: GTPase of unknown function; TIGRFAM: hydrogenase maturation GTPase HydF; small GTP-binding protein domain YP_005095862.1 PFAM: Lyase YP_005095864.1 PFAM: Radical SAM superfamily YP_005095865.1 PFAM: Uncharacterised BCR, YbaB family COG0718; TIGRFAM: DNA-binding protein, YbaB/EbfC family YP_005095866.1 PFAM: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I YP_005095867.1 PFAM: Triosephosphate isomerase; Phosphoglycerate kinase; TIGRFAM: triosephosphate isomerase YP_005095872.1 PFAM: ABC transporter YP_005095873.1 PFAM: ABC-2 type transporter YP_005095875.1 PFAM: RNA methyltransferase; TIGRFAM: RNA methyltransferase, RsmE family YP_005095876.1 PFAM: tRNA synthetase class II core domain (G, H, P, S and T); Seryl-tRNA synthetase N-terminal domain; TIGRFAM: seryl-tRNA synthetase YP_005095877.1 PFAM: OstA-like protein YP_005095879.1 PFAM: Patatin-like phospholipase YP_005095881.1 PFAM: PEGA domain YP_005095882.1 PFAM: MarR family YP_005095883.1 PFAM: Predicted membrane protein (DUF2232) YP_005095884.1 PFAM: tRNA (Uracil-5-)-methyltransferase; TIGRFAM: 23S rRNA (uracil-5-)-methyltransferase RumA YP_005095885.1 PFAM: Carbohydrate phosphorylase; Protein of unknown function (DUF3417); TIGRFAM: alpha-glucan phosphorylases YP_005095887.1 PFAM: Helix-turn-helix; Peptidase S24-like YP_005095888.1 PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase YP_005095889.1 PFAM: Putative transcriptional regulators (Ypuh-like); TIGRFAM: segregation and condensation protein B YP_005095891.1 PFAM: tRNA synthetases class I (W and Y); TIGRFAM: tryptophanyl-tRNA synthetase YP_005095894.1 PFAM: Glycine cleavage system P-protein YP_005095895.1 PFAM: Glycine cleavage system P-protein YP_005095896.1 PFAM: Glycine cleavage H-protein; TIGRFAM: glycine cleavage system H protein YP_005095897.1 PFAM: Aminomethyltransferase folate-binding domain; Glycine cleavage T-protein C-terminal barrel domain; TIGRFAM: glycine cleavage system T protein YP_005095899.1 PFAM: Phosphofructokinase; TIGRFAM: 6-phosphofructokinase YP_005095900.1 PFAM: Pyruvate kinase, barrel domain; Pyruvate kinase, alpha/beta domain; TIGRFAM: pyruvate kinase YP_005095901.1 PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit YP_005095902.1 PFAM: Protein of unknown function (DUF401); TIGRFAM: converved hypothetical integral membrane protein YP_005095903.1 PFAM: Serine hydroxymethyltransferase YP_005095904.1 PFAM: Aminotransferase class I and II YP_005095905.1 PFAM: Acetokinase family; TIGRFAM: butyrate kinase YP_005095906.1 PFAM: Phosphate acetyl/butaryl transferase; TIGRFAM: phosphate butyryltransferase YP_005095907.1 PFAM: Acetokinase family; TIGRFAM: butyrate kinase YP_005095909.1 PFAM: 4Fe-4S binding domain YP_005095910.1 PFAM: domain; Transketolase, C-terminal domain YP_005095911.1 PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YP_005095912.1 PFAM: Pyruvate ferredoxin/flavodoxin oxidoreductase; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family YP_005095913.1 PFAM: Deoxynucleoside kinase YP_005095914.1 PFAM: Deoxynucleoside kinase YP_005095916.1 PFAM: Type I restriction modification DNA specificity domain YP_005095918.1 PFAM: DNA methylase YP_005095919.1 PFAM: Type III restriction enzyme, res subunit YP_005095920.1 PFAM: Protein of unknown function (DUF1703); Predicted AAA-ATPase YP_005095921.1 PFAM: Uncharacterised protein family (UPF0158) YP_005095922.1 PFAM: Protein of unknown function (DUF1703); Predicted AAA-ATPase YP_005095924.1 PFAM: Domain of unknown function DUF83; UvrD/REP helicase YP_005095925.1 PFAM: Queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylases, various specificities; tRNA-guanine transglycosylase, queuosine-34-forming YP_005095926.1 PFAM: Formiminotransferase-cyclodeaminase YP_005095927.1 PFAM: Phosphorylase superfamily; TIGRFAM: purine nucleoside phosphorylase I, inosine and guanosine-specific; inosine guanosine and xanthosine phosphorylase family YP_005095928.1 PFAM: DHH family; DHHA1 domain YP_005095929.1 PFAM: Na+/H+ ion antiporter subunit YP_005095930.1 PFAM: Multiple resistance and pH regulation protein F (MrpF / PhaF) YP_005095931.1 PFAM: Na+/H+ antiporter subunit; TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit YP_005095932.1 PFAM: Bacterial extracellular solute-binding proteins, family 3 YP_005095933.1 PFAM: Domain related to MnhB subunit of Na+/H+ antiporter YP_005095934.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 4L YP_005095935.1 PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains YP_005095938.1 PFAM: Ferrous iron transport protein B; Ferrous iron transport protein B C terminus; Nucleoside recognition; TIGRFAM: ferrous iron transporter FeoB; small GTP-binding protein domain YP_005095940.1 PFAM: FeoA domain YP_005095941.1 PFAM: O-Antigen ligase YP_005095943.1 PFAM: Uncharacterised protein, DegV family COG1307; TIGRFAM: EDD domain protein, DegV family YP_005095944.1 PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecG YP_005095945.1 PFAM: Conserved hypothetical protein 95; TIGRFAM: RNA methyltransferase, RsmD family YP_005095946.1 PFAM: Late competence development protein ComFB YP_005095948.1 PFAM: CBS domain; Poly A polymerase head domain YP_005095953.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase YP_005095955.1 PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; ClpX C4-type zinc finger; TIGRFAM: endopeptidase Clp ATP-binding regulatory subunit (clpX) YP_005095956.1 PFAM: Glycoprotease family; TIGRFAM: putative glycoprotease GCP; metallohydrolase, glycoprotease/Kae1 family YP_005095957.1 PFAM: Dihydrouridine synthase (Dus); TIGRFAM: putative TIM-barrel protein, nifR3 family YP_005095959.1 PFAM: Response regulator receiver domain YP_005095960.1 PFAM: ABC transporter; ABC transporter transmembrane region YP_005095961.1 PFAM: ABC transporter; ABC transporter transmembrane region YP_005095962.1 PFAM: Radical SAM superfamily; TIGRFAM: radical SAM additional 4Fe4S-binding domain YP_005095966.1 PFAM: Archaeal ATPase; Archaea bacterial proteins of unknown function; manually curated; non-canonical start codon YP_005095967.1 PFAM: DNA alkylation repair enzyme YP_005095968.1 PFAM: Archaeal ATPase; Archaea bacterial proteins of unknown function YP_005095971.1 PFAM: Uncharacterized protein conserved in bacteria C-term(DUF2220) YP_005095973.1 PFAM: Response regulator receiver domain; TIGRFAM: intein N-terminal splicing region YP_005095974.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; TIGRFAM: PAS domain S-box YP_005095975.1 PFAM: Domain of unknown function (DUF1987) YP_005095977.1 PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_005095978.1 PFAM: Cache domain; Stage II sporulation protein E (SpoIIE) YP_005095979.1 PFAM: EamA-like transporter family YP_005095980.1 PFAM: Serine dehydratase alpha chain YP_005095981.1 PFAM: NAD-dependent DNA ligase OB-fold domain; NAD-dependent DNA ligase adenylation domain; BRCA1 C Terminus (BRCT) domain; NAD-dependent DNA ligase C4 zinc finger domain; TIGRFAM: DNA ligase, NAD-dependent YP_005095982.1 PFAM: MgtC family YP_005095983.1 PFAM: 4'-phosphopantetheinyl transferase superfamily; TIGRFAM: phosphopantethiene--protein transferase domain; holo-[acyl-carrier-protein] synthase YP_005095984.1 PFAM: Cell division protein FtsA; TIGRFAM: cell division protein FtsA YP_005095985.1 PFAM: MutS domain V; Smr domain; TIGRFAM: MutS2 family protein YP_005095987.1 PFAM: Transketolase, C-terminal domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; Transketolase, pyrimidine binding domain; TIGRFAM: 1-deoxy-D-xylulose-5-phosphate synthase YP_005095988.1 PFAM: NusB family; TIGRFAM: transcription antitermination factor NusB YP_005095989.1 PFAM: Protein of unknown function (DUF322) YP_005095990.1 PFAM: Elongation factor P, C-terminal; Elongation factor P (EF-P) KOW-like domain; Elongation factor P (EF-P) OB domain; TIGRFAM: translation elongation factor P YP_005095991.1 PFAM: Metallopeptidase family M24; Creatinase/Prolidase N-terminal domain YP_005095992.1 PFAM: MutS family domain IV; MutS domain II; MutS domain V; MutS domain I; MutS domain III; TIGRFAM: DNA mismatch repair protein MutS YP_005095993.1 PFAM: Clp protease; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP YP_005095994.1 PFAM: Domain of unknown function (DUF370) YP_005095995.1 PFAM: GTPase of unknown function; GTP1/OBG; Domain of unknown function (DUF1967); TIGRFAM: Obg family GTPase CgtA; Obg family GTPase CgtA, C-terminal extension; small GTP-binding protein domain YP_005095996.1 PFAM: Cytidylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase YP_005095997.1 PFAM: Shikimate dehydrogenase substrate binding domain; Shikimate / quinate 5-dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase YP_005095998.1 PFAM: S-adenosylmethionine-dependent methyltransferase YP_005096000.1 PFAM: DRTGG domain; DHH family; DHHA2 domain; CBS domain YP_005096001.1 PFAM: Outer membrane protein (OmpH-like) YP_005096002.1 PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter YP_005096003.1 PFAM: Possible lysine decarboxylase; TIGRFAM: TIGR00725 family protein YP_005096004.1 PFAM: tRNA synthetases class I (E and Q), catalytic domain; TIGRFAM: glutamyl-tRNA synthetase, bacterial family YP_005096005.1 PFAM: DNA / pantothenate metabolism flavoprotein; Flavoprotein; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic YP_005096006.1 PFAM: LysM domain; L,D-transpeptidase catalytic domain YP_005096007.1 PFAM: Membrane transport protein YP_005096008.1 PFAM: CoA binding domain YP_005096009.1 PFAM: MviN-like protein; TIGRFAM: integral membrane protein MviN YP_005096010.1 PFAM: pfkB family carbohydrate kinase; TIGRFAM: hexose kinase, 1-phosphofructokinase family YP_005096011.1 PFAM: CBS domain YP_005096012.1 PFAM: Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: MiaB-like tRNA modifying enzyme; radical SAM methylthiotransferase, MiaB/RimO family YP_005096013.1 PFAM: Aminotransferase class IV YP_005096014.1 PFAM: Protein of unknown function (DUF721) YP_005096015.1 PFAM: Toprim domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase B subunit, carboxyl terminus; TIGRFAM: DNA gyrase, B subunit YP_005096017.1 PFAM: Cell division protein FtsA; TIGRFAM: cell division protein FtsA YP_005096018.1 PFAM: Tubulin/FtsZ family, GTPase domain; FtsZ family, C-terminal domain; TIGRFAM: cell division protein FtsZ YP_005096019.1 PFAM: Type II/IV secretion system protein YP_005096022.1 PFAM: CRISPR associated protein Cas6; TIGRFAM: CRISPR-associated endoribonuclease Cas6 YP_005096023.1 PFAM: CRISPR-associated protein (Cas_CXXC_CXXC) YP_005096024.1 TIGRFAM: CRISPR-associated autoregulator DevR family; CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP YP_005096025.1 PFAM: CRISPR-associated protein (Cas_Cas5); TIGRFAM: CRISPR-associated protein Cas5, subtype I-B/TNEAP; CRISPR-associated protein Cas5, N-terminal domain YP_005096026.1 PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: CRISPR-associated helicase Cas3; CRISPR-associated endonuclease Cas3-HD YP_005096027.1 PFAM: Domain of unknown function DUF83; TIGRFAM: CRISPR-associated protein Cas4 YP_005096028.1 PFAM: CRISPR associated protein Cas1; TIGRFAM: CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP; CRISPR-associated endonuclease Cas1 YP_005096029.1 PFAM: CRISPR associated protein Cas2; TIGRFAM: CRISPR-associated endoribonuclease Cas2 YP_005096030.1 PFAM: Integrase core domain YP_005096031.1 PFAM: Transposase YP_005096036.1 PFAM: ABC transporter transmembrane region; ABC transporter YP_005096037.1 PFAM: ABC transporter; ABC transporter transmembrane region YP_005096038.1 PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: pyridoxal-phosphate dependent TrpB-like enzyme YP_005096040.1 PFAM: Recombinase; Resolvase, N terminal domain YP_005096043.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; STAS domain YP_005096044.1 PFAM: T5orf172 domain YP_005096045.1 PFAM: DNA methylase; Restriction endonuclease YP_005096046.1 PFAM: Helix-turn-helix; Peptidase S24-like YP_005096047.1 PFAM: Helix-turn-helix YP_005096050.1 PFAM: RecT family YP_005096051.1 PFAM: Metallo-beta-lactamase superfamily YP_005096052.1 PFAM: Conserved phage C-terminus (Phg_2220_C); TIGRFAM: phage conserved hypothetical protein, C-terminal domain YP_005096054.1 PFAM: DnaB-like helicase C terminal domain; TIGRFAM: replicative DNA helicase; manually curated YP_005096055.1 PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb) YP_005096056.1 PFAM: dUTPase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase (dut) YP_005096059.1 PFAM: Endodeoxyribonuclease RusA YP_005096066.1 PFAM: Helix-turn-helix; TIGRFAM: putative zinc finger/helix-turn-helix protein, YgiT family YP_005096068.1 PFAM: Phage terminase large subunit; TIGRFAM: phage terminase, large subunit, PBSX family YP_005096074.1 PFAM: Phage major capsid protein E YP_005096082.1 PFAM: Phage-related minor tail protein; TIGRFAM: phage tail tape measure protein, TP901 family, core region YP_005096088.1 PFAM: Calcineurin-like phosphoesterase YP_005096091.1 PFAM: Phage holin protein (Holin_LLH) YP_005096093.1 PFAM: Orthopoxvirus protein of unknown function (DUF830) YP_005096094.1 PFAM: Bacterial sugar transferase YP_005096095.1 PFAM: Protein of unknown function (DUF402) YP_005096096.1 PFAM: RecF/RecN/SMC N terminal domain; TIGRFAM: DNA repair protein RecN YP_005096098.1 PFAM: FAD binding domain; UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase YP_005096099.1 PFAM: DUF218 domain YP_005096100.1 PFAM: GTPase of unknown function; TIGRFAM: ribosome biogenesis GTPase YqeH; small GTP-binding protein domain YP_005096101.1 PFAM: Propanediol utilisation protein PduL YP_005096102.1 PFAM: Methyltransferase domain; TIGRFAM: methyltransferase, FkbM family YP_005096103.1 PFAM: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_005096105.1 PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; TIGRFAM: leucyl-tRNA synthetase, eubacterial and mitochondrial family YP_005096106.1 PFAM: CoA binding domain; Putative DNA-binding protein N-terminus YP_005096107.1 PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: probable S-adenosylmethionine-dependent methyltransferase, YraL family YP_005096108.1 PFAM: Exonuclease VII, large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit YP_005096110.1 PFAM: Predicted membrane protein (DUF2238) YP_005096111.1 PFAM: Glycosyl transferase family 2 YP_005096112.1 PFAM: Aldo/keto reductase family YP_005096113.1 PFAM: pfkB family carbohydrate kinase; TIGRFAM: hexose kinase, 1-phosphofructokinase family YP_005096114.1 PFAM: Phosphoribosyl transferase domain; TIGRFAM: orotate phosphoribosyltransferase, Thermus family YP_005096115.1 PFAM: Orotidine 5'-phosphate decarboxylase / HUMPS family; TIGRFAM: orotidine 5'-phosphate decarboxylase, subfamily 2 YP_005096116.1 PFAM: Dihydroorotate dehydrogenase; TIGRFAM: dihydroorotate dehydrogenase (subfamily 1) family protein YP_005096117.1 PFAM: Oxidoreductase FAD-binding domain; Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B YP_005096118.1 PFAM: Amidohydrolase family; TIGRFAM: dihydroorotase, multifunctional complex type YP_005096119.1 PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; Aspartate carbamoyltransferase regulatory chain, metal binding domain; Aspartate carbamoyltransferase regulatory chain, allosteric domain; TIGRFAM: aspartate carbamoyltransferase, regulatory subunit; aspartate carbamoyltransferase YP_005096120.1 PFAM: AIR carboxylase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, PurE protein YP_005096121.1 PFAM: SAICAR synthetase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase YP_005096122.1 PFAM: Phosphoribosylformylglycinamidine (FGAM) synthase; TIGRFAM: phosphoribosylformylglycinamidine synthase, purS protein YP_005096123.1 PFAM: Glutamine amidotransferase class-I; TIGRFAM: phosphoribosylformylglycinamidine synthase I YP_005096124.1 PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: phosphoribosylformylglycinamidine synthase II YP_005096125.1 PFAM: Phosphoribosyl transferase domain; Glutamine amidotransferases class-II; TIGRFAM: amidophosphoribosyltransferase YP_005096126.1 PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: phosphoribosylaminoimidazole synthetase YP_005096127.1 PFAM: Formyl transferase; TIGRFAM: phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent YP_005096128.1 PFAM: AICARFT/IMPCHase bienzyme; MGS-like domain; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_005096129.1 PFAM: Phosphoribosylglycinamide synthetase, N domain; Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, C domain; TIGRFAM: phosphoribosylamine--glycine ligase YP_005096130.1 PFAM: Membrane protein of unknown function (DUF340) YP_005096131.1 PFAM: Membrane protein of unknown function (DUF340) YP_005096132.1 PFAM: Sodium:neurotransmitter symporter family YP_005096134.1 PFAM: Citrate transporter YP_005096135.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_005096136.1 PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_005096137.1 PFAM: PhoU domain; TIGRFAM: phosphate transport system regulatory protein PhoU YP_005096138.1 PFAM: ABC transporter; TIGRFAM: phosphate ABC transporter, ATP-binding protein YP_005096139.1 PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease protein PstA YP_005096140.1 PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease protein PstC YP_005096141.1 TIGRFAM: phosphate binding protein YP_005096142.1 PFAM: Inorganic H+ pyrophosphatase; TIGRFAM: vacuolar-type H(+)-translocating pyrophosphatase YP_005096143.1 PFAM: Domain of unknown function (DUF2828) YP_005096144.1 PFAM: Eukaryotic and archaeal DNA primase small subunit YP_005096145.1 PFAM: CRISPR associated protein Cas1; TIGRFAM: CRISPR-associated endonuclease Cas1 YP_005096146.1 PFAM: CRISPR associated protein Cas2; TIGRFAM: CRISPR-associated endoribonuclease Cas2 YP_005096148.1 PFAM: Domain of unknown function (DUF1874); CRISPR-associated protein (cas_TM1812); TIGRFAM: CRISPR-associated DxTHG motif protein YP_005096149.1 PFAM: CRISPR-associated protein (Cas_APE2256) YP_005096150.1 PFAM: Uncharacterized conserved protein (DUF2276); TIGRFAM: CRISPR-associated endoribonuclease Cas6 YP_005096151.1 PFAM: RAMP superfamily; TIGRFAM: CRISPR type III-B/RAMP module RAMP protein Cmr6 YP_005096152.1 PFAM: CRISPR-associated protein (Cas_Cmr5); TIGRFAM: CRISPR type III-B/RAMP module-associated protein Cmr5 YP_005096153.1 PFAM: RAMP superfamily; TIGRFAM: CRISPR type III-B/RAMP module RAMP protein Cmr4 YP_005096154.1 PFAM: CRISPR-associated protein (Cas_Cmr3); TIGRFAM: CRISPR type III-B/RAMP module-associated protein Cmr3 YP_005096155.1 PFAM: CRISPR-associated protein; TIGRFAM: CRISPR-associated protein Cas10/Cmr2, subtype III-B YP_005096156.1 TIGRFAM: CRISPR type III-B/RAMP module RAMP protein Cmr1 YP_005096157.1 PFAM: Protein of unknown function (DUF1703); Predicted AAA-ATPase YP_005096160.1 PFAM: Trypsin YP_005096163.1 PFAM: Protein of unknown function (DUF1232) YP_005096164.1 PFAM: Predicted AAA-ATPase YP_005096165.1 PFAM: Cyclic nucleotide-binding domain YP_005096166.1 PFAM: Bacterial regulatory proteins, lacI family; family YP_005096167.1 PFAM: Calcineurin-like phosphoesterase YP_005096168.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005096169.1 PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 1 YP_005096170.1 PFAM: Endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP, putative YP_005096171.1 PFAM: Anticodon binding domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetase class II core domain (G, H, P, S and T); TGS domain; TIGRFAM: threonyl-tRNA synthetase YP_005096172.1 PFAM: Cyclic nucleotide-binding domain YP_005096173.1 PFAM: Cyclic nucleotide-binding domain YP_005096174.1 PFAM: Glycosyl transferases group 1 YP_005096175.1 PFAM: Uncharacterised protein family (UPF0104); TIGRFAM: conserved hypothetical protein YP_005096176.1 PFAM: Glycosyl transferases group 1 YP_005096179.1 PFAM: SPFH domain / Band 7 family YP_005096180.1 PFAM: NfeD-like YP_005096181.1 PFAM: Metallo-beta-lactamase superfamily; TIGRFAM: ribonuclease Z, Thermotoga type YP_005096182.1 PFAM: Ribosomal protein L9, N-terminal domain; Ribosomal protein L9, C-terminal domain; TIGRFAM: ribosomal protein L9 YP_005096183.1 PFAM: Ribosomal protein S18; TIGRFAM: ribosomal protein S18 YP_005096184.1 PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb) YP_005096185.1 PFAM: Ribosomal protein S6; TIGRFAM: ribosomal protein S6 YP_005096186.1 PFAM: Exonuclease; TIGRFAM: exonuclease, DNA polymerase III, epsilon subunit family YP_005096187.1 PFAM: PhoH-like protein YP_005096189.1 PFAM: Protein of unknown function; TIGRFAM: HAD-superfamily hydrolase, subfamily IIIA; HAD superfamily (subfamily IIIA) phosphatase, TIGR01668 YP_005096190.1 PFAM: Uncharacterised protein family UPF0047; TIGRFAM: secondary thiamine-phosphate synthase enzyme YP_005096191.1 PFAM: Glycosyl hydrolase family 1 YP_005096193.1 PFAM: Bacterial regulatory protein, arsR family YP_005096195.1 PFAM: HTH domain YP_005096196.1 PFAM: Putative transposase, YhgA-like; TIGRFAM: conserved hypothetical protein (putative transposase or invertase) YP_005096197.1 PFAM: Uncharacterized protein family (UPF0051) YP_005096198.1 PFAM: ABC transporter; TIGRFAM: FeS assembly ATPase SufC YP_005096199.1 PFAM: Protein of unknown function DUF45 YP_005096200.1 PFAM: Threonyl and Alanyl tRNA synthetase second additional domain YP_005096201.1 PFAM: Hsp70 protein; TIGRFAM: chaperone protein DnaK YP_005096202.1 PFAM: DALR anticodon binding domain; Arginyl tRNA synthetase N terminal domain; tRNA synthetases class I (R); TIGRFAM: arginyl-tRNA synthetase YP_005096204.1 PFAM: Radical SAM superfamily; B12 binding domain; TIGRFAM: B12-binding domain/radical SAM domain protein, MJ_1487 family YP_005096206.1 PFAM: Iron-containing alcohol dehydrogenase YP_005096207.1 PFAM: Protein of unknown function DUF124; TIGRFAM: TIGR00266 family protein YP_005096208.1 PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III (xth) YP_005096209.1 PFAM: EamA-like transporter family YP_005096210.1 PFAM: Queuosine biosynthesis protein; TIGRFAM: S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_005096211.1 PFAM: GTPase of unknown function; Protein of unknown function (DUF933); TIGRFAM: GTP-binding protein YchF YP_005096212.1 PFAM: Uncharacterised P-loop hydrolase UPF0079; TIGRFAM: ATPase, YjeE family; manually curated; non-canonical start codon YP_005096213.1 PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: glycerol kinase YP_005096214.1 PFAM: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, A subunit YP_005096215.1 PFAM: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, B subunit YP_005096216.1 PFAM: Thioesterase superfamily YP_005096217.1 PFAM: Prokaryotic protein of unknown function (DUF849) YP_005096218.1 PFAM: Zinc-binding dehydrogenase YP_005096219.1 PFAM: Lysine-2,3-aminomutase; Radical SAM superfamily; TIGRFAM: KamA family protein; lysine-2,3-aminomutase YP_005096220.1 PFAM: MaoC like domain YP_005096222.1 PFAM: MutS domain V YP_005096223.1 PFAM: D-Lysine 5,6-aminomutase alpha subunit YP_005096224.1 PFAM: B12 binding domain YP_005096225.1 PFAM: short chain dehydrogenase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase YP_005096226.1 PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases YP_005096227.1 PFAM: ABC-2 type transporter YP_005096228.1 PFAM: ABC-2 type transporter YP_005096229.1 PFAM: ABC transporter YP_005096230.1 PFAM: Peptidase family S41 YP_005096232.1 PFAM: PspC domain YP_005096234.1 PFAM: Sodium/calcium exchanger protein; TIGRFAM: K+-dependent Na+/Ca+ exchanger related-protein YP_005096235.1 PFAM: Metallo-beta-lactamase superfamily YP_005096236.1 PFAM: Thioredoxin YP_005096237.1 PFAM: Cobalamin adenosyltransferase; TIGRFAM: ATP:cob(I)alamin adenosyltransferase YP_005096238.1 PFAM: Protein of unknown function (DUF503) YP_005096239.1 PFAM: HD domain; TIGRFAM: putative HD superfamily hydrolase of NAD metabolism YP_005096241.1 PFAM: Cell envelope-related transcriptional attenuator domain; TIGRFAM: cell envelope-related function transcriptional attenuator common domain YP_005096242.1 PFAM: Predicted permease YP_005096243.1 PFAM: ABC transporter YP_005096244.1 PFAM: Nucleoside diphosphate kinase YP_005096245.1 PFAM: S-adenosylmethionine-dependent methyltransferase YP_005096247.1 PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate adenylyltransferase, GlgD subunit YP_005096248.1 PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate adenylyltransferase, GlgD subunit; glucose-1-phosphate adenylyltransferase YP_005096251.1 PFAM: Radical SAM superfamily YP_005096252.1 PFAM: Respiratory-chain NADH dehydrogenase 51 Kd subunit; SLBB domain; TIGRFAM: electron transport complex, RnfABCDGE type, C subunit YP_005096253.1 PFAM: NQR2, RnfD, RnfE family; TIGRFAM: electron transport complex, RnfABCDGE type, D subunit YP_005096254.1 PFAM: FMN-binding domain; TIGRFAM: electron transport complex, RnfABCDGE type, G subunit YP_005096255.1 PFAM: Rnf-Nqr subunit, membrane protein; TIGRFAM: electron transport complex, RnfABCDGE type, E subunit YP_005096256.1 PFAM: Rnf-Nqr subunit, membrane protein; TIGRFAM: electron transport complex, RnfABCDGE type, A subunit YP_005096257.1 PFAM: Putative Fe-S cluster; TIGRFAM: electron transport complex, RnfABCDGE type, B subunit YP_005096259.1 PFAM: MMPL family YP_005096262.1 PFAM: Peptidase family S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc) YP_005096263.1 PFAM: Phosphoribulokinase / Uridine kinase family YP_005096264.1 PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family YP_005096265.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YP_005096266.1 PFAM: Bacterial extracellular solute-binding protein YP_005096267.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005096268.1 PFAM: ABC transporter; TOBE domain; TIGRFAM: spermidine/putrescine ABC transporter ATP-binding subunit YP_005096269.1 PFAM: Bacterial extracellular solute-binding protein YP_005096270.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005096271.1 PFAM: ABC transporter; TOBE domain; TIGRFAM: spermidine/putrescine ABC transporter ATP-binding subunit YP_005096272.1 PFAM: FtsJ-like methyltransferase; S4 domain; TIGRFAM: hemolysin TlyA family protein YP_005096273.1 PFAM: GMP synthase C terminal domain; Glutamine amidotransferase class-I; NAD synthase; TIGRFAM: GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit; GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit YP_005096274.1 PFAM: CBS domain; IMP dehydrogenase / GMP reductase domain; TIGRFAM: inosine-5'-monophosphate dehydrogenase YP_005096275.1 PFAM: Major Facilitator Superfamily YP_005096276.1 PFAM: Oligopeptidase F; Peptidase family M3; TIGRFAM: oligoendopeptidase, pepF/M3 family YP_005096277.1 PFAM: Bacteriocin class IId cyclical uberolysin-like; TIGRFAM: circular bacteriocin, circularin A/uberolysin family YP_005096279.1 PFAM: Integral membrane protein DUF95 YP_005096282.1 PFAM: Alpha amylase, catalytic domain YP_005096283.1 PFAM: Peptidase family M1 YP_005096285.1 PFAM: Protein of unknown function(DUF2089) YP_005096286.1 PFAM: Isochorismatase family YP_005096287.1 PFAM: Aminotransferase class-V YP_005096288.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; TIGRFAM: D-3-phosphoglycerate dehydrogenase YP_005096290.1 PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: septum site-determining protein MinD YP_005096292.1 PFAM: Uncharacterised protein family UPF0047; TIGRFAM: secondary thiamine-phosphate synthase enzyme YP_005096293.1 PFAM: HAMP domain; Cache domain; Methyl-accepting chemotaxis protein (MCP) signaling domain YP_005096294.1 PFAM: GGDEF domain; Bacterial extracellular solute-binding proteins, family 3; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain YP_005096295.1 PFAM: Receptor family ligand binding region YP_005096297.1 PFAM: Haemolysin-III related; TIGRFAM: channel protein, hemolysin III family YP_005096298.1 PFAM: MGS-like domain; TIGRFAM: methylglyoxal synthase YP_005096299.1 PFAM: ATP synthase subunit D; TIGRFAM: H(+)-transporting ATP synthase, vacuolar type, subunit D YP_005096300.1 PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain YP_005096301.1 PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain YP_005096302.1 PFAM: ATP synthase (E/31 kDa) subunit YP_005096303.1 PFAM: ATP synthase (F/14-kDa) subunit YP_005096304.1 PFAM: ATP synthase subunit C YP_005096305.1 PFAM: V-type ATPase 116kDa subunit family YP_005096306.1 PFAM: ATP synthase (C/AC39) subunit YP_005096308.1 PFAM: Calcineurin-like phosphoesterase; TIGRFAM: phosphoesterase, MJ0936 family YP_005096309.1 PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_005096310.1 PFAM: Amidohydrolase family YP_005096311.1 PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_005096312.1 PFAM: E1-E2 ATPase; Heavy-metal-associated domain; haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase YP_005096313.1 PFAM: Bacterial regulatory protein, arsR family YP_005096314.1 PFAM: Protein of unknown function (DUF996) YP_005096315.1 PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YP_005096317.1 PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: amidohydrolase YP_005096318.1 PFAM: Aminotransferase class-III YP_005096319.1 PFAM: Amino acid kinase family; TIGRFAM: aspartate kinase, monofunctional class; aspartate kinase YP_005096320.1 PFAM: Tetrahydrodipicolinate succinyltransferase N-terminal; Bacterial transferase hexapeptide (three repeats); TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase YP_005096321.1 PFAM: Dihydrodipicolinate reductase, N-terminus; Dihydrodipicolinate reductase, C-terminus; TIGRFAM: dihydrodipicolinate reductase YP_005096322.1 PFAM: Dihydrodipicolinate synthetase family; TIGRFAM: dihydrodipicolinate synthase YP_005096323.1 PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; TIGRFAM: diaminopimelate decarboxylase YP_005096324.1 PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) YP_005096326.1 PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_005096327.1 PFAM: 4Fe-4S binding domain YP_005096328.1 PFAM: pfkB family carbohydrate kinase YP_005096330.1 PFAM: ABC transporter transmembrane region; ABC transporter YP_005096331.1 PFAM: ABC transporter YP_005096333.1 PFAM: Protein of unknown function (DUF990) YP_005096334.1 PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; HAD superfamily (subfamily IA) hydrolase, TIGR02254 YP_005096335.1 PFAM: Methyltransferase domain YP_005096336.1 PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_005096338.1 PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_005096339.1 PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_005096340.1 PFAM: HD domain YP_005096341.1 PFAM: PP-loop family; TIGRFAM: tRNA(Ile)-lysidine synthetase, N-terminal domain YP_005096342.1 PFAM: FtsH Extracellular; Peptidase family M41; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent metalloprotease FtsH YP_005096343.1 PFAM: Thioesterase superfamily YP_005096344.1 PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_005096345.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_005096346.1 PFAM: Pyrimidine nucleoside phosphorylase C-terminal domain; Glycosyl transferase family, a/b domain; Glycosyl transferase family, helical bundle domain; TIGRFAM: pyrimidine-nucleoside phosphorylase YP_005096348.1 PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain YP_005096349.1 PFAM: Bacterial regulatory protein, arsR family YP_005096350.1 PFAM: Na+/H+ ion antiporter subunit YP_005096351.1 PFAM: Multiple resistance and pH regulation protein F (MrpF / PhaF) YP_005096352.1 PFAM: Na+/H+ antiporter subunit; TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit YP_005096354.1 PFAM: Domain related to MnhB subunit of Na+/H+ antiporter YP_005096355.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 4L YP_005096356.1 PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains YP_005096357.1 PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains YP_005096358.1 PFAM: NADH dehydrogenase YP_005096359.1 PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, B subunit YP_005096360.1 PFAM: Respiratory-chain NADH dehydrogenase, 30 Kd subunit YP_005096361.1 PFAM: Respiratory-chain NADH dehydrogenase, 49 Kd subunit YP_005096362.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase YP_005096363.1 PFAM: YjeF-related protein N-terminus; Carbohydrate kinase; TIGRFAM: yjeF N-terminal region; yjeF C-terminal region, hydroxyethylthiazole kinase-related YP_005096364.1 PFAM: Sigma-54 factor, Activator interacting domain (AID); Adenosine deaminase z-alpha domain; Sigma-54, DNA binding domain YP_005096365.1 PFAM: Thiamin pyrophosphokinase, vitamin B1 binding domain; Thiamin pyrophosphokinase, catalytic domain; TIGRFAM: thiamine pyrophosphokinase YP_005096366.1 PFAM: Tub family; MarR family YP_005096367.1 PFAM: NAD dependent epimerase/dehydratase family YP_005096368.1 PFAM: Methyl-accepting chemotaxis protein (MCP) signaling domain YP_005096369.1 PFAM: Metallo-beta-lactamase superfamily YP_005096370.1 PFAM: LVIVD repeat YP_005096371.1 PFAM: Chromate transporter; TIGRFAM: chromate transporter, chromate ion transporter (CHR) family YP_005096372.1 PFAM: Acylphosphatase YP_005096373.1 PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase YP_005096375.1 PFAM: LVIVD repeat YP_005096376.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_005096378.1 PFAM: Positive regulator of sigma(E), RseC/MucC YP_005096379.1 PFAM: Major Facilitator Superfamily YP_005096380.1 PFAM: Helicase conserved C-terminal domain; UvrB/uvrC motif; Type III restriction enzyme, res subunit; Ultra-violet resistance protein B; TIGRFAM: excinuclease ABC, B subunit YP_005096382.1 PFAM: Phosphofructokinase YP_005096383.1 PFAM: Phosphate transporter family YP_005096384.1 PFAM: Protein of unknown function DUF47; TIGRFAM: TIGR00153 family protein YP_005096385.1 PFAM: DnaJ domain YP_005096386.1 PFAM: CAAX amino terminal protease family YP_005096387.1 PFAM: Glutamine amidotransferase class-I; CTP synthase N-terminus; TIGRFAM: CTP synthase YP_005096388.1 PFAM: Phosphopantetheine attachment site; TIGRFAM: acyl carrier protein YP_005096390.1 PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: histidyl-tRNA synthetase YP_005096391.1 PFAM: Cation transport protein; TIGRFAM: potassium uptake protein, TrkH family YP_005096392.1 PFAM: TrkA-N domain; TrkA-C domain YP_005096393.1 PFAM: TrkA-N domain YP_005096394.1 PFAM: Response regulator receiver domain YP_005096395.1 PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent protease HslVU, ATPase subunit YP_005096396.1 PFAM: Polysaccharide biosynthesis/export protein; SLBB domain YP_005096397.1 PFAM: Tetratricopeptide repeat YP_005096399.1 PFAM: Domain of unknown function (DUF205); TIGRFAM: acyl-phosphate glycerol 3-phosphate acyltransferase YP_005096400.1 PFAM: GTPase of unknown function; TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein domain YP_005096401.1 PFAM: S1 RNA binding domain; TIGRFAM: ribosomal protein S1 YP_005096402.1 PFAM: LytB protein; TIGRFAM: (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) YP_005096403.1 PFAM: Cytidylate kinase; TIGRFAM: cytidylate kinase YP_005096404.1 PFAM: GAD domain; tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: aspartyl-tRNA synthetase, bacterial type YP_005096405.1 PFAM: S-layer homology domain YP_005096406.1 PFAM: HD domain YP_005096407.1 PFAM: Alpha amylase, catalytic domain YP_005096408.1 PFAM: Transglycosylase SLT domain YP_005096409.1 PFAM: MOFRL family YP_005096410.1 PFAM: Alpha amylase, C-terminal all-beta domain; Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Alpha amylase, catalytic domain; TIGRFAM: alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase YP_005096411.1 PFAM: pfkB family carbohydrate kinase; TIGRFAM: ribokinase YP_005096413.1 PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: ornithine carbamoyltransferase YP_005096414.1 PFAM: Amino acid kinase family; TIGRFAM: carbamate kinase YP_005096415.1 PFAM: Calcineurin-like phosphoesterase YP_005096416.1 PFAM: HI0933-like protein; TIGRFAM: flavoprotein, HI0933 family YP_005096417.1 PFAM: Periplasmic solute binding protein family YP_005096419.1 PFAM: RNase H YP_005096420.1 PFAM: OB-fold nucleic acid binding domain YP_005096421.1 PFAM: Flavodoxin; Metallo-beta-lactamase superfamily YP_005096422.1 PFAM: 4Fe-4S binding domain YP_005096423.1 PFAM: Metallo-beta-lactamase superfamily YP_005096424.1 PFAM: Response regulator receiver domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_005096426.1 PFAM: Protein of unknown function (DUF554) YP_005096427.1 PFAM: Diacylglycerol kinase catalytic domain; TIGRFAM: lipid kinase, YegS/Rv2252/BmrU family YP_005096428.1 PFAM: Radical SAM superfamily; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein YP_005096429.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase YP_005096430.1 PFAM: Amidohydrolase family YP_005096431.1 PFAM: Branched-chain amino acid transport system / permease component YP_005096432.1 PFAM: Branched-chain amino acid transport system / permease component YP_005096433.1 PFAM: ABC transporter YP_005096434.1 PFAM: Basic membrane protein YP_005096436.1 PFAM: Survival protein SurE; TIGRFAM: 5'/3'-nucleotidase SurE YP_005096437.1 PFAM: Polypeptide deformylase; TIGRFAM: peptide deformylase YP_005096438.1 PFAM: Formyl transferase; Formyl transferase, C-terminal domain; TIGRFAM: methionyl-tRNA formyltransferase YP_005096440.1 PFAM: Uncharacterised protein family (UPF0104); TIGRFAM: conserved hypothetical protein YP_005096442.1 PFAM: Archaeal ATPase YP_005096443.1 PFAM: BFD-like [2Fe-2S] binding domain; FAD dependent oxidoreductase YP_005096445.1 PFAM: Alpha amylase, catalytic domain; Carbohydrate-binding module 48 (Isoamylase N-terminal domain); TIGRFAM: glycogen debranching enzyme GlgX YP_005096446.1 PFAM: Probable molybdopterin binding domain; Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA N-terminal domain; competence/damage-inducible protein CinA C-terminal domain; molybdenum cofactor synthesis domain YP_005096447.1 PFAM: CheW-like domain; P2 response regulator binding domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Signal transducing histidine kinase, homodimeric domain; Hpt domain YP_005096448.1 PFAM: CheW-like domain YP_005096449.1 PFAM: Response regulator receiver domain YP_005096451.1 PFAM: FliP family; TIGRFAM: flagellar biosynthetic protein FliP YP_005096452.1 PFAM: Bacterial export proteins, family 3; TIGRFAM: flagellar biosynthetic protein FliQ YP_005096453.1 PFAM: Bacterial export proteins, family 1; TIGRFAM: flagellar biosynthetic protein FliR YP_005096454.1 PFAM: FlhB HrpN YscU SpaS Family; TIGRFAM: flagellar biosynthetic protein FlhB YP_005096455.1 PFAM: FHIPEP family; TIGRFAM: flagellar biosynthesis protein FlhA YP_005096456.1 PFAM: SRP54-type protein, GTPase domain; TIGRFAM: flagellar biosynthetic protein FlhF YP_005096457.1 PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_005096459.1 PFAM: CheC-like family YP_005096460.1 PFAM: CheD YP_005096461.1 PFAM: Histone acetyltransferases subunit 3; Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family YP_005096463.1 PFAM: Helicase conserved C-terminal domain; TRCF domain; CarD-like/TRCF domain; DEAD/DEAH box helicase; TIGRFAM: transcription-repair coupling factor (mfd) YP_005096467.1 PFAM: Staphylococcal nuclease homologue YP_005096468.1 PFAM: NUDIX domain YP_005096470.1 PFAM: Aspartate decarboxylase; TIGRFAM: L-aspartate-alpha-decarboxylase YP_005096471.1 PFAM: Protein of unknown function (DUF795) YP_005096472.1 PFAM: Alpha amylase, catalytic domain YP_005096473.1 PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: primosomal protein N' YP_005096474.1 PFAM: Bacterial flagellin N-terminal helical region; Bacterial flagellin C-terminal helical region YP_005096475.1 PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signaling domain YP_005096476.1 PFAM: CheW-like domain YP_005096477.1 PFAM: WD40-like Beta Propeller Repeat YP_005096478.1 PFAM: Yqey-like protein YP_005096479.1 PFAM: Bacterial regulatory proteins, tetR family YP_005096480.1 PFAM: 2-nitropropane dioxygenase; manually curated; non-canonical start codon YP_005096481.1 PFAM: Phosphopantetheine attachment site; TIGRFAM: acyl carrier protein YP_005096482.1 PFAM: ABC transporter YP_005096485.1 PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor YP_005096486.1 PFAM: TRAM domain; Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB; radical SAM methylthiotransferase, MiaB/RimO family YP_005096487.1 PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain YP_005096488.1 PFAM: NOL1/NOP2/sun family; NusB family; TIGRFAM: ribosomal RNA small subunit methyltransferase RsmB YP_005096489.1 PFAM: Asparaginase; TIGRFAM: L-asparaginases, type I; L-asparaginases, type II YP_005096490.1 PFAM: Domain of unknown function DUF20 YP_005096493.1 PFAM: Glycoprotease family; TIGRFAM: universal bacterial protein YeaZ YP_005096495.1 PFAM: Fibronectin type III domain YP_005096497.1 PFAM: Papain family cysteine protease YP_005096499.1 PFAM: Plasmid stabilisation system protein YP_005096501.1 PFAM: Alpha amylase, catalytic domain YP_005096503.1 PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; Signal peptide binding domain; TIGRFAM: signal recognition particle protein YP_005096504.1 PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16 YP_005096506.1 PFAM: PRC-barrel domain; RimM N-terminal domain; TIGRFAM: 16S rRNA processing protein RimM YP_005096507.1 PFAM: tRNA (Guanine-1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase YP_005096508.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2168) YP_005096509.1 PFAM: Ribosomal protein L19; TIGRFAM: ribosomal protein L19, bacterial type YP_005096510.1 PFAM: Peptidase S26; Peptidase S24-like; TIGRFAM: signal peptidase I, bacterial type YP_005096511.1 PFAM: rRNA small subunit methyltransferase G; TIGRFAM: 16S rRNA (guanine(527)-N(7))-methyltransferase GidB YP_005096512.1 PFAM: Biotin/lipoate A/B protein ligase family YP_005096513.1 PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signaling domain YP_005096514.1 PFAM: Citrate transporter YP_005096515.1 PFAM: Bacterial extracellular solute-binding protein YP_005096516.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005096517.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005096518.1 PFAM: HD domain YP_005096519.1 PFAM: Ham1 family; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family YP_005096520.1 PFAM: Ribulose-phosphate 3 epimerase family; TIGRFAM: ribulose-phosphate 3-epimerase YP_005096521.1 PFAM: Protein of unknown function, DUF258; TIGRFAM: ribosome small subunit-dependent GTPase A YP_005096522.1 PFAM: PASTA domain YP_005096523.1 PFAM: Radical SAM superfamily; TIGRFAM: 23S rRNA m2A2503 methyltransferase YP_005096525.1 PFAM: Double-stranded RNA binding motif; RNase3 domain; TIGRFAM: ribonuclease III, bacterial YP_005096526.1 PFAM: Transketolase, thiamine diphosphate binding domain; Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain YP_005096527.1 PFAM: Protein of unknown function (DUF2905) YP_005096528.1 PFAM: PSP1 C-terminal conserved region YP_005096530.1 PFAM: Protein of unknown function (DUF327) YP_005096531.1 PFAM: R3H domain YP_005096532.1 PFAM: 60Kd inner membrane protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family, C-terminal domain YP_005096533.1 PFAM: Domain of unknown function DUF37; TIGRFAM: conserved hypothetical protein YidD YP_005096534.1 PFAM: Ribonuclease P; TIGRFAM: ribonuclease P protein component, eubacterial YP_005096535.1 PFAM: Ribosomal protein L34; TIGRFAM: ribosomal protein L34, bacterial type YP_005096536.1 PFAM: HD domain YP_005096537.1 PFAM: LysM domain YP_005096538.1 PFAM: NIF3 (NGG1p interacting factor 3); TIGRFAM: dinuclear metal center protein, YbgI/SA1388 family YP_005096539.1 PFAM: ABC transporter; TOBE domain YP_005096540.1 PFAM: Phd_YefM; TIGRFAM: prevent-host-death family protein YP_005096542.1 PFAM: PQQ enzyme repeat YP_005096544.1 PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: asparaginyl-tRNA synthetase YP_005096545.1 PFAM: ADP-ribosylglycohydrolase YP_005096546.1 PFAM: HD domain YP_005096547.1 PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signaling domain YP_005096548.1 PFAM: Bacterial extracellular solute-binding protein YP_005096549.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005096550.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005096551.1 PFAM: SIS domain; Helix-turn-helix domain, rpiR family YP_005096552.1 PFAM: Alpha amylase, catalytic domain YP_005096554.1 PFAM: MotA/TolQ/ExbB proton channel family YP_005096555.1 PFAM: OmpA family YP_005096557.1 PFAM: ABC transporter YP_005096559.1 PFAM: PEP-utilising enzyme, mobile domain; PEP-utilising enzyme, TIM barrel domain; Pyruvate phosphate dikinase, PEP/pyruvate binding domain; TIGRFAM: pyruvate, phosphate dikinase YP_005096560.1 PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus YP_005096561.1 PFAM: MazG nucleotide pyrophosphohydrolase domain YP_005096564.1 PFAM: Major Facilitator Superfamily YP_005096565.1 PFAM: Ribosomal protein L17; TIGRFAM: ribosomal protein L17 YP_005096566.1 PFAM: RNA polymerase Rpb3/Rpb11 dimerisation domain; RNA polymerase Rpb3/RpoA insert domain; Bacterial RNA polymerase, alpha chain C terminal domain; TIGRFAM: DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type YP_005096567.1 PFAM: Ribosomal protein S4/S9 N-terminal domain; S4 domain; TIGRFAM: ribosomal protein S4, bacterial/organelle type YP_005096568.1 PFAM: Ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11 YP_005096569.1 PFAM: Ribosomal protein S13/S18; TIGRFAM: 30S ribosomal protein S13 YP_005096570.1 PFAM: Ribosomal protein L36; TIGRFAM: ribosomal protein L36, bacterial type YP_005096571.1 PFAM: Translation initiation factor 1A / IF-1; TIGRFAM: translation initiation factor IF-1 YP_005096572.1 PFAM: Metallopeptidase family M24; TIGRFAM: methionine aminopeptidase, type I YP_005096573.1 PFAM: Adenylate kinase, active site lid; Adenylate kinase; TIGRFAM: adenylate kinases YP_005096574.1 PFAM: eubacterial secY protein; TIGRFAM: preprotein translocase, SecY subunit YP_005096575.1 PFAM: Ribosomal protein L18e/L15; TIGRFAM: ribosomal protein L15, bacterial/organelle YP_005096576.1 PFAM: Ribosomal protein L30p/L7e; TIGRFAM: ribosomal protein L30, bacterial/organelle YP_005096577.1 PFAM: Ribosomal protein S5, C-terminal domain; Ribosomal protein S5, N-terminal domain; TIGRFAM: ribosomal protein S5, bacterial/organelle type YP_005096578.1 PFAM: Ribosomal L18p/L5e family; TIGRFAM: ribosomal protein L18, bacterial type YP_005096579.1 PFAM: Ribosomal protein L6; TIGRFAM: ribosomal protein L6, bacterial type YP_005096580.1 PFAM: Ribosomal protein S8 YP_005096581.1 PFAM: Ribosomal protein S14p/S29e YP_005096582.1 PFAM: ribosomal L5P family C-terminus; Ribosomal protein L5 YP_005096583.1 PFAM: KOW motif; TIGRFAM: ribosomal protein L24, bacterial/organelle YP_005096584.1 PFAM: Ribosomal protein L14p/L23e; TIGRFAM: ribosomal protein L14, bacterial/organelle YP_005096585.1 PFAM: Ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17 YP_005096586.1 PFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29 YP_005096587.1 PFAM: Ribosomal protein L16p/L10e; TIGRFAM: ribosomal protein L16, bacterial/organelle YP_005096588.1 PFAM: KH domain; Ribosomal protein S3, C-terminal domain; Ribosomal protein S3, N-terminal domain; TIGRFAM: ribosomal protein S3, bacterial type YP_005096589.1 PFAM: Ribosomal protein L22p/L17e; TIGRFAM: ribosomal protein L22, bacterial type YP_005096590.1 PFAM: Ribosomal protein S19; TIGRFAM: ribosomal protein S19, bacterial/organelle YP_005096591.1 PFAM: Ribosomal Proteins L2, RNA binding domain; Ribosomal Proteins L2, C-terminal domain; TIGRFAM: ribosomal protein L2, bacterial/organellar YP_005096592.1 PFAM: Ribosomal protein L23 YP_005096593.1 PFAM: Ribosomal protein L4/L1 family; TIGRFAM: 50S ribosomal protein L4, bacterial/organelle YP_005096594.1 PFAM: Ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3, bacterial YP_005096595.1 PFAM: Ribosomal protein S10p/S20e; TIGRFAM: ribosomal protein S10, bacterial/organelle YP_005096596.1 PFAM: Elongation factor Tu C-terminal domain; Elongation factor Tu domain 2; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation elongation factor TU YP_005096597.1 PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain YP_005096598.1 PFAM: Ribosomal protein S7p/S5e; TIGRFAM: ribosomal protein S7, bacterial/organelle YP_005096599.1 PFAM: Ribosomal protein S12; TIGRFAM: ribosomal protein S12, bacterial/organelle YP_005096601.1 PFAM: ThiS family; TIGRFAM: thiamine biosynthesis protein ThiS YP_005096602.1 PFAM: Thiazole biosynthesis protein ThiG YP_005096603.1 PFAM: Radical SAM superfamily; Biotin and Thiamin Synthesis associated domain; TIGRFAM: thiazole biosynthesis protein ThiH YP_005096604.1 PFAM: ThiC family; TIGRFAM: thiamine biosynthesis protein ThiC YP_005096605.1 PFAM: Phosphomethylpyrimidine kinase; Archaeal phosphomethylpyrimidine kinase YP_005096606.1 PFAM: Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase YP_005096608.1 PFAM: Major Facilitator Superfamily YP_005096609.1 PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; manually curated YP_005096610.1 PFAM: Iron only hydrogenase large subunit, C-terminal domain; Methyl-accepting chemotaxis protein (MCP) signaling domain YP_005096611.1 PFAM: Streptococcal 67 kDa myosin-cross-reactive antigen like family YP_005096612.1 PFAM: Bacterial regulatory proteins, tetR family; TIGRFAM: probable dihydroxyacetone kinase regulator YP_005096613.1 PFAM: Fic/DOC family YP_005096614.1 PFAM: ABC transporter; ABC transporter transmembrane region YP_005096615.1 PFAM: ABC transporter; ABC transporter transmembrane region YP_005096616.1 PFAM: MarR family YP_005096617.1 PFAM: Radical SAM superfamily; Helix-hairpin-helix motif YP_005096618.1 PFAM: Transposase, Mutator family YP_005096619.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; MutL C terminal dimerisation domain; DNA mismatch repair protein, C-terminal domain; TIGRFAM: DNA mismatch repair protein MutL YP_005096620.1 PFAM: SpoU rRNA Methylase family; RNA 2'-O ribose methyltransferase substrate binding; TIGRFAM: rRNA methylase, putative, group 3 YP_005096621.1 PFAM: RNase3 domain YP_005096624.1 PFAM: Radical SAM superfamily YP_005096626.1 PFAM: ABC transporter; ABC transporter transmembrane region YP_005096627.1 PFAM: Archaeal ATPase; Protein of unknown function (DUF1703) YP_005096630.1 PFAM: Radical SAM superfamily; TIGRFAM: radical SAM additional 4Fe4S-binding domain YP_005096631.1 TIGRFAM: radical SAM additional 4Fe4S-binding domain YP_005096633.1 PFAM: ABC transporter YP_005096635.1 PFAM: ABC transporter; ABC transporter transmembrane region YP_005096636.1 PFAM: Archaeal ATPase; Protein of unknown function (DUF1703) YP_005096640.1 PFAM: ABC transporter YP_005096643.1 PFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_005096644.1 PFAM: 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase YP_005096645.1 PFAM: RibD C-terminal domain; Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: riboflavin-specific deaminase C-terminal domain; riboflavin biosynthesis protein RibD YP_005096646.1 PFAM: Lumazine binding domain; TIGRFAM: riboflavin synthase, alpha subunit YP_005096647.1 PFAM: tRNA synthetases class II (D, K and N) YP_005096650.1 PFAM: Protein of unknown function DUF58 YP_005096651.1 PFAM: ATPase family associated with various cellular activities (AAA) YP_005096652.1 PFAM: Uncharacterized ACR, COG1993 YP_005096653.1 PFAM: CrcB-like protein; TIGRFAM: crcB protein YP_005096654.1 PFAM: Bacterial DNA-binding protein YP_005096655.1 PFAM: Eco57I restriction endonuclease YP_005096656.1 PFAM: Uracil DNA glycosylase superfamily; TIGRFAM: uracil-DNA glycosylase, family 4 YP_005096657.1 PFAM: Predicted permease YjgP/YjgQ family YP_005096658.1 PFAM: PhoU domain YP_005096659.1 PFAM: ATP-NAD kinase YP_005096660.1 PFAM: YGGT family YP_005096661.1 PFAM: Alanine racemase, N-terminal domain; TIGRFAM: pyridoxal phosphate enzyme, YggS family YP_005096662.1 PFAM: Holliday junction DNA helicase ruvB C-terminus; Holliday junction DNA helicase ruvB N-terminus; TIGRFAM: Holliday junction DNA helicase, RuvB subunit YP_005096663.1 PFAM: Peptidase family M50; TIGRFAM: RIP metalloprotease RseP YP_005096664.1 PFAM: GcpE protein; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase YP_005096665.1 PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_005096666.1 PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase YP_005096667.1 PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: aminoacyl-histidine dipeptidase YP_005096668.1 PFAM: Amidohydrolase family YP_005096669.1 PFAM: Pyridoxal-phosphate dependent enzyme YP_005096670.1 PFAM: Molybdopterin-binding domain of aldehyde dehydrogenase; Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain YP_005096671.1 manually curated YP_005096672.1 PFAM: Acetyltransferase (GNAT) family YP_005096673.1 PFAM: HMGL-like; Conserved carboxylase domain YP_005096675.1 PFAM: Cyclic nucleotide-binding domain YP_005096676.1 PFAM: Predicted permease YP_005096677.1 PFAM: Putative Fe-S cluster; Predicted permease YP_005096678.1 PFAM: Ferric uptake regulator family YP_005096679.1 PFAM: NusA N-terminal domain; TIGRFAM: transcription termination factor NusA YP_005096680.1 PFAM: Uncharacterised BCR, YhbC family COG0779 YP_005096681.1 PFAM: Bacterial DNA polymerase III alpha subunit; TIGRFAM: DNA-directed DNA polymerase III (polc) YP_005096682.1 PFAM: Putative transposase, YhgA-like; TIGRFAM: conserved hypothetical protein (putative transposase or invertase) YP_005096683.1 PFAM: Domain of unknown function (DUF814); Fibronectin-binding protein A N-terminus (FbpA) YP_005096684.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; NADH:flavin oxidoreductase / NADH oxidase family YP_005096685.1 PFAM: 4Fe-4S binding domain YP_005096686.1 PFAM: Dinitrogenase iron-molybdenum cofactor YP_005096687.1 PFAM: Dinitrogenase iron-molybdenum cofactor YP_005096688.1 PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_005096689.1 PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; 4Fe-4S binding domain YP_005096692.1 PFAM: Adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthase YP_005096693.1 PFAM: Ribosomal RNA adenine dimethylase; TIGRFAM: dimethyladenosine transferase YP_005096694.1 PFAM: Domain of unknown function DUF20 YP_005096695.1 PFAM: Uncharacterised protein family (UPF0081); TIGRFAM: RNAse H-fold protein YqgF YP_005096697.1 PFAM: DHHA1 domain; DHH family; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ YP_005096699.1 PFAM: AAA domain (Cdc48 subfamily); Clp amino terminal domain; C-terminal, D2-small domain, of ClpB protein; ATPase family associated with various cellular activities (AAA) YP_005096700.1 TIGRFAM: flagella basal body P-ring formation protein FlgA YP_005096701.1 PFAM: Flagellar L-ring protein YP_005096702.1 PFAM: Flagellar P-ring protein YP_005096705.1 PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor YP_005096708.1 PFAM: Flagella basal body rod protein; Domain of unknown function (DUF1078); TIGRFAM: flagellar basal-body rod protein FlgF; fagellar hook-basal body proteins YP_005096709.1 PFAM: Flagella basal body rod protein; Domain of unknown function (DUF1078); TIGRFAM: flagellar basal-body rod protein FlgF; fagellar hook-basal body proteins; flagellar basal-body rod protein FlgG, Gram-negative bacteria YP_005096710.1 PFAM: Mechanosensitive ion channel YP_005096711.1 PFAM: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; S-adenosyl-L-homocysteine hydrolase; TIGRFAM: adenosylhomocysteinase YP_005096712.1 PFAM: Radical SAM superfamily; TIGRFAM: KamA family protein YP_005096713.1 PFAM: ABC transporter YP_005096714.1 PFAM: FecCD transport family YP_005096715.1 PFAM: Periplasmic binding protein YP_005096716.1 PFAM: LVIVD repeat YP_005096717.1 PFAM: PQQ enzyme repeat YP_005096718.1 PFAM: Carbon starvation protein CstA YP_005096719.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain YP_005096720.1 PFAM: Histidine kinase; 5TMR of 5TMR-LYT; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_005096723.1 PFAM: Iron only hydrogenase large subunit, C-terminal domain; 2Fe-2S iron-sulfur cluster binding domain; NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; Iron hydrogenase small subunit; TIGRFAM: hydrogenase, Fe-only YP_005096724.1 PFAM: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; Respiratory-chain NADH dehydrogenase 51 Kd subunit YP_005096725.1 PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit YP_005096726.1 PFAM: Thermophilic metalloprotease (M29) YP_005096727.1 PFAM: SIS domain YP_005096728.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005096729.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005096730.1 PFAM: Bacterial extracellular solute-binding protein YP_005096731.1 PFAM: Glycosyl hydrolase family 3 N terminal domain YP_005096732.1 PFAM: Bacterial regulatory protein, arsR family; ROK family YP_005096734.1 PFAM: Archaeal ATPase YP_005096735.1 PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle YP_005096736.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005096737.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005096738.1 PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain YP_005096739.1 PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain YP_005096740.1 PFAM: Glycosyl hydrolase family 1 YP_005096741.1 PFAM: Bacterial regulatory proteins, lacI family; family YP_005096742.1 PFAM: Uncharacterised protein, DegV family COG1307; TIGRFAM: EDD domain protein, DegV family YP_005096743.1 manually curated YP_005096744.1 PFAM: Putative modulator of DNA gyrase YP_005096745.1 PFAM: Putative modulator of DNA gyrase YP_005096746.1 PFAM: HhH-GPD superfamily base excision DNA repair protein; Iron-sulfur binding domain of endonuclease III; Helix-hairpin-helix motif; TIGRFAM: endonuclease III YP_005096747.1 PFAM: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase; Glycosyl transferases group 1 YP_005096748.1 PFAM: Cytidylyltransferase; TIGRFAM: cytidyltransferase-related domain; glycerol-3-phosphate cytidylyltransferase YP_005096749.1 PFAM: Archaeal ATPase; Archaea bacterial proteins of unknown function YP_005096750.1 PFAM: Protein of unknown function (DUF1703); Predicted AAA-ATPase YP_005096751.1 PFAM: haloacid dehalogenase-like hydrolase YP_005096752.1 PFAM: Bacterial regulatory proteins, lacI family; family YP_005096753.1 PFAM: Glycosyl hydrolase family 1 YP_005096754.1 PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain YP_005096755.1 PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain YP_005096756.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005096757.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005096758.1 PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle YP_005096759.1 PFAM: Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: lon-related putative ATP-dependent protease YP_005096760.1 PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family YP_005096761.1 PFAM: HD domain; Bacterial extracellular solute-binding proteins, family 3; TIGRFAM: uncharacterized domain HDIG YP_005096762.1 PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signaling domain YP_005096763.1 PFAM: Nucleotidyl transferase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YP_005096766.1 TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like YP_005096767.1 PFAM: Tellurite resistance protein TehB YP_005096768.1 PFAM: Uncharacterized protein family UPF0029; Domain of unknown function (DUF1949); TIGRFAM: uncharacterized protein, YigZ family YP_005096769.1 PFAM: Alanine racemase, C-terminal domain; Alanine racemase, N-terminal domain; TIGRFAM: alanine racemase YP_005096770.1 PFAM: HD domain; OB-fold nucleic acid binding domain; TIGRFAM: uncharacterized domain HDIG YP_005096771.1 PFAM: Toprim domain; Topoisomerase DNA binding C4 zinc finger; DNA topoisomerase; TIGRFAM: DNA topoisomerase I, bacterial YP_005096772.1 PFAM: D-ala D-ala ligase C-terminus; D-ala D-ala ligase N-terminus; TIGRFAM: D-alanine--D-alanine ligase YP_005096773.1 PFAM: Radical SAM superfamily YP_005096774.1 PFAM: Iron-containing alcohol dehydrogenase YP_005096775.1 PFAM: Phosphoglycerate mutase family YP_005096776.1 PFAM: 2-phosphosulpholactate phosphatase YP_005096777.1 PFAM: Fibronectin-binding protein (FBP); PPIC-type PPIASE domain YP_005096779.1 PFAM: CoA-ligase; ATP-grasp domain; TIGRFAM: succinyl-CoA synthetase, beta subunit YP_005096780.1 PFAM: CoA binding domain; TIGRFAM: succinyl-CoA synthetase, alpha subunit YP_005096781.1 PFAM: Predicted Permease Membrane Region; TIGRFAM: AspT/YidE/YbjL antiporter duplication domain YP_005096783.1 PFAM: Predicted SPOUT methyltransferase; TIGRFAM: rRNA large subunit m3Psi methyltransferase RlmH YP_005096784.1 PFAM: Cell cycle protein YP_005096785.1 PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG YP_005096786.1 PFAM: Bacterial extracellular solute-binding proteins, family 3 YP_005096787.1 PFAM: Domain of unknown function (DUF2520) YP_005096788.1 PFAM: Ketopantoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_005096789.1 PFAM: Biotin/lipoate A/B protein ligase family; TIGRFAM: birA, biotin-[acetyl-CoA-carboxylase] ligase region; manually curated; non-canonical start codon YP_005096790.1 PFAM: Phosphoribosyl transferase domain; TIGRFAM: hypoxanthine phosphoribosyltransferase YP_005096791.1 PFAM: Phosphorylase superfamily; TIGRFAM: purine nucleoside phosphorylase I, inosine and guanosine-specific; inosine guanosine and xanthosine phosphorylase family YP_005096792.1 PFAM: Transglycosylase SLT domain YP_005096793.1 PFAM: Secretory protein of YscJ/FliF family; Flagellar M-ring protein C-terminal; TIGRFAM: flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) YP_005096794.1 PFAM: FliG C-terminal domain; TIGRFAM: flagellar motor switch protein FliG YP_005096796.1 PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: ATPase FliI/YscN family; flagellar protein export ATPase FliI YP_005096797.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005096798.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005096800.1 PFAM: IPP transferase; TIGRFAM: tRNA dimethylallyltransferase YP_005096801.1 PFAM: LSM domain; TIGRFAM: RNA chaperone Hfq YP_005096802.1 PFAM: GTPase of unknown function; TIGRFAM: GTP-binding protein HflX; small GTP-binding protein domain YP_005096803.1 PFAM: Peptidase family M23 YP_005096804.1 PFAM: S-adenosylmethionine synthetase, C-terminal domain; S-adenosylmethionine synthetase, N-terminal domain; S-adenosylmethionine synthetase, central domain; TIGRFAM: S-adenosylmethionine synthetase YP_005096805.1 PFAM: Ribosomal protein S20; TIGRFAM: ribosomal protein S20 YP_005096806.1 PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YP_005096807.1 PFAM: Protein of unknown function (DUF1292) YP_005096808.1 PFAM: Calcineurin-like phosphoesterase YP_005096809.1 PFAM: Protein of unknown function (DUF3307) YP_005096810.1 PFAM: SNO glutamine amidotransferase family; TIGRFAM: pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2 YP_005096811.1 PFAM: SOR/SNZ family; TIGRFAM: pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 YP_005096813.1 PFAM: 6-O-methylguanine DNA methyltransferase, DNA binding domain; TIGRFAM: O-6-methylguanine DNA methyltransferase YP_005096814.1 PFAM: Serine dehydrogenase proteinase YP_005096815.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005096816.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005096817.1 PFAM: Bacterial extracellular solute-binding protein YP_005096818.1 PFAM: Protein of unknown function DUF88; TIGRFAM: TIGR00288 family protein YP_005096819.1 PFAM: FAD dependent oxidoreductase YP_005096820.1 PFAM: Pyridoxal-phosphate dependent enzyme YP_005096821.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YP_005096822.1 PFAM: 4Fe-4S binding domain; Domain of unknown function (DUF362) YP_005096823.1 PFAM: Protein of unknown function (DUF1393) YP_005096826.1 PFAM: Helix-turn-helix YP_005096827.1 PFAM: Dihydroorotate dehydrogenase; TIGRFAM: dihydroorotate dehydrogenase (subfamily 1) family protein YP_005096828.1 PFAM: Na+/H+ antiporter family YP_005096829.1 PFAM: Cobalt transport protein YP_005096831.1 PFAM: Patatin-like phospholipase; manually curated; non-canonical start codon YP_005096833.1 PFAM: EamA-like transporter family YP_005096834.1 PFAM: ZIP Zinc transporter YP_005096835.1 PFAM: Putative neutral zinc metallopeptidase YP_005096836.1 PFAM: Serine dehydratase beta chain; TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, beta subunit YP_005096837.1 PFAM: Serine dehydratase alpha chain; TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, alpha subunit YP_005096838.1 PFAM: C-terminal domain of 1-Cys peroxiredoxin; AhpC/TSA family YP_005096839.1 PFAM: HD domain; Cache domain YP_005096840.1 PFAM: Adenosine specific kinase YP_005096841.1 PFAM: Heme NO binding; Methyl-accepting chemotaxis protein (MCP) signaling domain YP_005096843.1 PFAM: Mur ligase family, glutamate ligase domain; Mur ligase family, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramate--alanine ligase YP_005096844.1 PFAM: Glycosyltransferase family 28 C-terminal domain; Glycosyltransferase family 28 N-terminal domain YP_005096845.1 PFAM: Cell cycle protein YP_005096846.1 PFAM: Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_005096847.1 PFAM: Bacterial transferase hexapeptide (three repeats) YP_005096848.1 PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signaling domain YP_005096849.1 PFAM: Aldehyde ferredoxin oxidoreductase, N-terminal domain; Aldehyde ferredoxin oxidoreductase, domains 2 & 3 YP_005096850.1 PFAM: ThiS family; TIGRFAM: MoaD family protein, archaeal YP_005096851.1 PFAM: Probable molybdopterin binding domain; MoeA N-terminal region (domain I and II); MoeA C-terminal region (domain IV); TIGRFAM: molybdenum cofactor synthesis domain YP_005096852.1 PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: threonine synthase YP_005096853.1 PFAM: 2Fe-2S iron-sulfur cluster binding domain; [2Fe-2S] binding domain YP_005096854.1 PFAM: FAD binding domain in molybdopterin dehydrogenase; CO dehydrogenase flavoprotein C-terminal domain YP_005096855.1 PFAM: FAD binding domain in molybdopterin dehydrogenase; CO dehydrogenase flavoprotein C-terminal domain YP_005096856.1 PFAM: 2Fe-2S iron-sulfur cluster binding domain; [2Fe-2S] binding domain YP_005096857.1 PFAM: Molybdopterin-binding domain of aldehyde dehydrogenase; Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain YP_005096858.1 PFAM: Endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP, putative YP_005096860.1 PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase, RluA family YP_005096862.1 PFAM: Uncharacterised ACR, YagE family COG1723 YP_005096863.1 PFAM: Glycosyl hydrolases family 31 YP_005096865.1 manually curated; non-canonical start codon YP_005096866.1 PFAM: RecF/RecN/SMC N terminal domain; SMC proteins Flexible Hinge Domain; TIGRFAM: chromosome segregation protein SMC, common bacterial type YP_005096867.1 PFAM: Major Facilitator Superfamily YP_005096868.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YP_005096869.1 PFAM: Protein of unknown function (DUF1703); Predicted AAA-ATPase YP_005096873.1 PFAM: Protein of unknown function (DUF1703); Predicted AAA-ATPase YP_005096877.1 PFAM: Protein of unknown function (DUF524) YP_005096878.1 PFAM: AAA domain (dynein-related subfamily) YP_005096882.1 PFAM: Polysaccharide biosynthesis protein YP_005096883.1 PFAM: Glycosyl transferases group 1 YP_005096884.1 PFAM: Polysaccharide pyruvyl transferase YP_005096885.1 PFAM: Radical SAM superfamily; TIGRFAM: radical SAM additional 4Fe4S-binding domain YP_005096890.1 PFAM: Glycosyl transferases group 1; PIGA (GPI anchor biosynthesis) YP_005096891.1 PFAM: NAD dependent epimerase/dehydratase family YP_005096892.1 PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: GDP-mannose 4,6-dehydratase YP_005096894.1 PFAM: Glycosyl transferases group 1 YP_005096897.1 PFAM: Glycosyl transferases group 1 YP_005096898.1 PFAM: NAD dependent epimerase/dehydratase family YP_005096899.1 PFAM: Bacterial transferase hexapeptide (three repeats) YP_005096900.1 PFAM: Glycosyl transferases group 1 YP_005096901.1 PFAM: Bacterial sugar transferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; Undecaprenyl-phosphate galactose phosphotransferase, WbaP; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase YP_005096902.1 PFAM: tRNA synthetases class I (C) catalytic domain; DALR domain; TIGRFAM: cysteinyl-tRNA synthetase YP_005096903.1 PFAM: tRNA synthetases class I (E and Q), catalytic domain; TIGRFAM: glutamyl-tRNA synthetase, bacterial family YP_005096905.1 PFAM: Response regulator receiver domain; Stage II sporulation protein E (SpoIIE) YP_005096906.1 PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: cytidine deaminase, homotetrameric YP_005096907.1 PFAM: CBS domain; Domain of unknown function DUF21; Transporter associated domain YP_005096908.1 PFAM: Uncharacterized BCR, YitT family COG1284; Uncharacterized protein conserved in bacteria (DUF2179) YP_005096909.1 PFAM: DnaJ C terminal region; DnaJ central domain (4 repeats); DnaJ domain; TIGRFAM: chaperone protein DnaJ YP_005096910.1 PFAM: GrpE YP_005096911.1 PFAM: Domain of unknown function; HrcA protein C terminal domain; TIGRFAM: heat shock gene repressor HrcA YP_005096912.1 PFAM: Mur ligase family, glutamate ligase domain; Mur ligase family, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase YP_005096913.1 PFAM: Mur ligase family, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase YP_005096914.1 PFAM: Glycosyl transferase family 4; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase YP_005096916.1 PFAM: Plasmid maintenance system killer protein; TIGRFAM: addiction module toxin, RelE/StbE family YP_005096917.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_005096918.1 PFAM: S-adenosyl-l-methionine hydroxide adenosyltransferase YP_005096919.1 PFAM: Bacterial fructose-1,6-bisphosphatase, glpX-encoded; TIGRFAM: fructose-1,6-bisphosphatase, class II YP_005096920.1 PFAM: Aminopeptidase I zinc metalloprotease (M18) YP_005096923.1 PFAM: Chain length determinant protein; CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family YP_005096924.1 PFAM: PHP domain YP_005096925.1 PFAM: Chain length determinant protein YP_005096926.1 PFAM: Bacterial sugar transferase YP_005096927.1 PFAM: Glycosyl transferase family 2 YP_005096928.1 PFAM: Glycosyl transferase family 11 YP_005096929.1 PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: GDP-mannose 4,6-dehydratase YP_005096930.1 PFAM: NAD dependent epimerase/dehydratase family YP_005096933.1 PFAM: Glycosyl transferases group 1 YP_005096934.1 PFAM: GHMP kinases C terminal; GHMP kinases N terminal domain YP_005096935.1 PFAM: SIS domain; Ribosomal protein S2; TIGRFAM: phosphoheptose isomerase YP_005096936.1 PFAM: Polynucleotide kinase 3 phosphatase; Nucleotidyl transferase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIIA; D,D-heptose 1,7-bisphosphate phosphatase; histidinol-phosphate phosphatase family domain YP_005096937.1 PFAM: Glycosyl transferases group 1 YP_005096938.1 PFAM: Glycosyl transferase family 2 YP_005096939.1 PFAM: Polysaccharide biosynthesis protein YP_005096942.1 PFAM: Protein of unknown function (DUF2922) YP_005096943.1 PFAM: Protein of unknown function (DUF1659) YP_005096944.1 PFAM: Bacterial sugar transferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; Undecaprenyl-phosphate galactose phosphotransferase, WbaP YP_005096945.1 PFAM: Glycosyl transferases group 1 YP_005096946.1 PFAM: Glycosyl transferases group 1 YP_005096947.1 PFAM: O-Antigen ligase YP_005096948.1 PFAM: Chain length determinant protein YP_005096949.1 PFAM: Glycosyl transferases group 1 YP_005096951.1 PFAM: FemAB family YP_005096952.1 PFAM: Glycosyl transferases group 1 YP_005096954.1 PFAM: Polysaccharide biosynthesis protein YP_005096955.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase YP_005096957.1 PFAM: Nucleotidyl transferase YP_005096958.1 PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: GDP-mannose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase YP_005096959.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family YP_005096960.1 PFAM: Bacterial transferase hexapeptide (three repeats); TIGRFAM: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family YP_005096961.1 PFAM: Asparagine synthase YP_005096962.1 PFAM: Bacterial capsule synthesis protein PGA_cap YP_005096964.1 PFAM: Glycosyl transferase family 2 YP_005096965.1 PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: UDP-glucose-4-epimerase YP_005096966.1 PFAM: Prokaryotic N-terminal methylation motif; Bacterial type II secretion system protein G; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_005096967.1 PFAM: Bacterial regulatory proteins, tetR family YP_005096969.1 PFAM: GatB/GatE catalytic domain; GatB domain; TIGRFAM: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit YP_005096970.1 PFAM: Amidase; TIGRFAM: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit YP_005096971.1 PFAM: Putative transposase, YhgA-like; TIGRFAM: conserved hypothetical protein (putative transposase or invertase) YP_005096972.1 PFAM: HD domain YP_005096973.1 PFAM: Rhomboid family YP_005096974.1 PFAM: ROK family; TIGRFAM: ROK family protein (putative glucokinase) YP_005096975.1 PFAM: Uncharacterized protein family UPF0007; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_005096976.1 PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: apurinic endonuclease (APN1) YP_005096977.1 PFAM: SPFH domain / Band 7 family; TIGRFAM: HflK protein YP_005096978.1 PFAM: SPFH domain / Band 7 family; TIGRFAM: HflC protein YP_005096980.1 PFAM: Methyltransferase small domain YP_005096981.1 PFAM: Thymidylate kinase; TIGRFAM: thymidylate kinase YP_005096982.1 PFAM: Archaeal ATPase YP_005096984.1 PFAM: Domain of unknown function (DUF74) YP_005096986.1 PFAM: ABC transporter YP_005096987.1 PFAM: Bacterial regulatory proteins, gntR family YP_005096988.1 PFAM: Amidohydrolase family; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase YP_005096989.1 PFAM: HD domain YP_005096991.1 PFAM: Major Facilitator Superfamily YP_005096992.1 PFAM: Calcineurin-like phosphoesterase YP_005096993.1 PFAM: Putative methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase YP_005096994.1 PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signaling domain YP_005096995.1 PFAM: Methyl-accepting chemotaxis protein (MCP) signaling domain YP_005096996.1 PFAM: DNA polymerase family B; DNA polymerase family B, exonuclease domain YP_005096997.1 PFAM: Homoserine dehydrogenase, NAD binding domain; Domain of unknown function DUF108; TIGRFAM: aspartate dehydrogenase YP_005096998.1 PFAM: Quinolinate synthetase A protein; TIGRFAM: quinolinate synthetase complex, A subunit YP_005096999.1 PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; Quinolinate phosphoribosyl transferase, N-terminal domain; TIGRFAM: nicotinate-nucleotide pyrophosphorylase YP_005097000.1 PFAM: ABC transporter; TIGRFAM: FeS assembly ATPase SufC YP_005097001.1 PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufB YP_005097002.1 PFAM: Uncharacterized protein family (UPF0051) YP_005097003.1 PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurases, SufS subfamily YP_005097004.1 PFAM: NifU-like N terminal domain; TIGRFAM: SUF system FeS assembly protein, NifU family YP_005097005.1 PFAM: Uncharacterized protein family UPF0027 YP_005097006.1 PFAM: Protein of unknown function DUF89 YP_005097007.1 PFAM: Calcineurin-like phosphoesterase; 5'-nucleotidase, C-terminal domain YP_005097008.1 PFAM: Protein of unknown function (DUF1703) YP_005097009.1 PFAM: 'Cold-shock' DNA-binding domain YP_005097010.1 PFAM: 'Cold-shock' DNA-binding domain YP_005097011.1 PFAM: GPR1/FUN34/yaaH family YP_005097012.1 PFAM: DeoC/LacD family aldolase; TIGRFAM: deoxyribose-phosphate aldolase YP_005097013.1 PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG YP_005097015.1 PFAM: Protein of unknown function (DUF2466); TIGRFAM: DNA repair protein radc YP_005097016.1 PFAM: Maf-like protein; TIGRFAM: MAF protein YP_005097017.1 PFAM: Heptaprenyl diphosphate synthase component I YP_005097018.1 PFAM: Protein of unknown function (DUF1312) YP_005097019.1 PFAM: ApbE family YP_005097020.1 PFAM: Radical SAM superfamily YP_005097021.1 PFAM: AMMECR1; TIGRFAM: uncharacterized protein, PH0010 family YP_005097022.1 PFAM: TruB family pseudouridylate synthase (N terminal domain); TIGRFAM: tRNA pseudouridine 55 synthase YP_005097023.1 PFAM: Ribosome-binding factor A; TIGRFAM: ribosome-binding factor A YP_005097024.1 PFAM: HDOD domain; TIGRFAM: uncharacterized domain HDIG YP_005097025.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_005097026.1 PFAM: Protein of unknown function (DUF1667) YP_005097027.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase YP_005097028.1 PFAM: BFD-like [2Fe-2S] binding domain; FAD dependent oxidoreductase YP_005097031.1 PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain YP_005097032.1 PFAM: Tetratricopeptide repeat YP_005097033.1 PFAM: Vacuole effluxer Atg22 like YP_005097034.1 PFAM: Phosphorylase superfamily; TIGRFAM: purine-nucleoside phosphorylase, family 1 (deoD); uridine phosphorylase YP_005097037.1 PFAM: LVIVD repeat YP_005097042.1 PFAM: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family YP_005097043.1 PFAM: Elongation factor Tu domain 2; Translation-initiation factor 2; Translation initiation factor IF-2, N-terminal region; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation initiation factor IF-2 YP_005097045.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family YP_005097046.1 PFAM: CoA binding domain; Polysaccharide biosynthesis protein YP_005097047.1 PFAM: Glycosyl transferase family 4 YP_005097049.1 PFAM: Phosphoenolpyruvate carboxykinase YP_005097050.1 PFAM: Major Facilitator Superfamily YP_005097051.1 PFAM: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase, dimerisation domain YP_005097052.1 PFAM: Acetokinase family; TIGRFAM: acetate kinase YP_005097053.1 PFAM: ABC transporter YP_005097054.1 PFAM: Predicted permease YP_005097057.1 PFAM: ABC transporter YP_005097058.1 PFAM: Calcineurin-like phosphoesterase; TIGRFAM: phosphoesterase, MJ0936 family YP_005097059.1 PFAM: MreB/Mbl protein; TIGRFAM: cell shape determining protein, MreB/Mrl family YP_005097060.1 PFAM: Clostripain family YP_005097061.1 PFAM: KH domain; HD domain; Domain of unknown function (DUF3552); TIGRFAM: conserved hypothetical protein YmdA/YtgF; uncharacterized domain HDIG YP_005097062.1 PFAM: RecX family YP_005097063.1 PFAM: recA bacterial DNA recombination protein; TIGRFAM: protein RecA YP_005097064.1 PFAM: 2',5' RNA ligase family; TIGRFAM: 2'-5' RNA ligase YP_005097065.1 PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_005097066.1 PFAM: Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: ribosomal protein S12 methylthiotransferase RimO; radical SAM methylthiotransferase, MiaB/RimO family YP_005097068.1 PFAM: Alanine racemase, N-terminal domain YP_005097069.1 PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter YP_005097070.1 PFAM: PHP domain YP_005097072.1 PFAM: Bacterial type II secretion system protein F domain YP_005097077.1 PFAM: Bacterial type II and III secretion system protein YP_005097078.1 PFAM: Memo-like protein YP_005097079.1 PFAM: Protein of unknown function (DUF322) YP_005097080.1 PFAM: DAK2 domain; TIGRFAM: DAK2 domain fusion protein YloV YP_005097081.1 PFAM: Glycyl-tRNA synthetase alpha subunit; TIGRFAM: glycyl-tRNA synthetase, tetrameric type, alpha subunit YP_005097082.1 PFAM: Glycyl-tRNA synthetase beta subunit; DALR anticodon binding domain; TIGRFAM: glycyl-tRNA synthetase, tetrameric type, beta subunit YP_005097083.1 TIGRFAM: RecB family nuclease, putative, TM0106 family YP_005097084.1 PFAM: GTPase of unknown function; KH domain; TIGRFAM: GTP-binding protein Era; small GTP-binding protein domain YP_005097085.1 PFAM: Inosine-uridine preferring nucleoside hydrolase YP_005097086.1 PFAM: Predicted permease YP_005097087.1 PFAM: ABC transporter YP_005097089.1 PFAM: Outer membrane efflux protein YP_005097091.1 PFAM: Phosphate acetyl/butaryl transferase; TIGRFAM: phosphate butyryltransferase YP_005097093.1 PFAM: Carbon-nitrogen hydrolase; TIGRFAM: apolipoprotein N-acyltransferase YP_005097094.1 PFAM: NAD synthase; manually curated; non-canonical start codon YP_005097095.1 PFAM: Calcineurin-like phosphoesterase; TIGRFAM: phosphoesterase, MJ0936 family YP_005097096.1 PFAM: Stage V sporulation protein S (SpoVS) YP_005097097.1 PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E YP_005097099.1 PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; TIGRFAM: penicillin-binding protein 2 YP_005097102.1 PFAM: MreB/Mbl protein; TIGRFAM: cell shape determining protein, MreB/Mrl family YP_005097103.1 PFAM: Crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC YP_005097107.1 PFAM: SecA DEAD-like domain; SecA preprotein cross-linking domain; Helicase conserved C-terminal domain; SecA Wing and Scaffold domain; TIGRFAM: preprotein translocase, SecA subunit YP_005097108.1 PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 1; peptide chain release factor 2 YP_005097109.1 PFAM: MatE; TIGRFAM: putative efflux protein, MATE family YP_005097110.1 PFAM: Multi-copper polyphenol oxidoreductase laccase; TIGRFAM: uncharacterized protein, YfiH family YP_005097111.1 PFAM: NAD synthase; Carbon-nitrogen hydrolase; TIGRFAM: NAD+ synthetase YP_005097113.1 PFAM: N-6 DNA Methylase YP_005097114.1 PFAM: Ion channel; TrkA-N domain; TrkA-C domain YP_005097115.1 PFAM: PQQ enzyme repeat YP_005097119.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain YP_005097120.1 PFAM: Receptor family ligand binding region YP_005097121.1 PFAM: HD domain; Response regulator receiver domain YP_005097122.1 PFAM: Fructose-bisphosphate aldolase class-II; TIGRFAM: ketose-bisphosphate aldolases; fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist YP_005097123.1 PFAM: Protein of unknown function (DUF3214) YP_005097124.1 PFAM: Radical SAM superfamily; B12 binding domain YP_005097125.1 PFAM: Bordetella pertussis Bvg accessory factor family; TIGRFAM: pantothenate kinase, type III YP_005097126.1 PFAM: yrdC domain; SUA5 domain; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein YP_005097128.1 PFAM: Flagellar protein FliS; TIGRFAM: flagellar biosynthetic protein FliS YP_005097130.1 PFAM: Cupin domain; Helix-turn-helix YP_005097131.1 PFAM: S-adenosylmethionine decarboxylase; TIGRFAM: S-adenosylmethionine decarboxylase proenzyme, Bacillus form YP_005097132.1 PFAM: Spermine/spermidine synthase; TIGRFAM: spermidine synthase YP_005097133.1 PFAM: Protein of unknown function (DUF1622) YP_005097134.1 PFAM: DNA recombination-mediator protein A; TIGRFAM: DNA protecting protein DprA YP_005097135.1 PFAM: Protein of unknown function, DUF400 YP_005097136.1 PFAM: Bacterial extracellular solute-binding protein YP_005097137.1 PFAM: Metallo-beta-lactamase superfamily YP_005097138.1 PFAM: Calcineurin-like phosphoesterase; TIGRFAM: phosphoesterase, MJ0936 family YP_005097139.1 PFAM: Hsp20/alpha crystallin family YP_005097140.1 PFAM: Transposase IS116/IS110/IS902 family; Transposase YP_005097142.1 PFAM: Phosphoribulokinase / Uridine kinase family; TIGRFAM: uridine kinase YP_005097143.1 PFAM: Cyclic nucleotide-binding domain YP_005097144.1 PFAM: Ion channel; TrkA-N domain YP_005097145.1 PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signaling domain YP_005097146.1 PFAM: KH domain; S1 RNA binding domain; 3' exoribonuclease family, domain 1; 3' exoribonuclease family, domain 2; Polyribonucleotide nucleotidyltransferase, RNA binding domain; TIGRFAM: polyribonucleotide nucleotidyltransferase YP_005097147.1 PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16) YP_005097148.1 PFAM: HD domain YP_005097149.1 PFAM: HD domain YP_005097150.1 PFAM: HD domain YP_005097153.1 PFAM: C-methyltransferase YP_005097154.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family YP_005097156.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase YP_005097157.1 PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Oxidoreductase family, C-terminal alpha/beta domain YP_005097158.1 PFAM: Sigma 54 modulation protein / S30EA ribosomal protein; TIGRFAM: ribosomal subunit interface protein YP_005097159.1 PFAM: Cytidylyltransferase YP_005097160.1 PFAM: Bacterial extracellular solute-binding protein YP_005097161.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005097162.1 PFAM: Amidohydrolase family; TIGRFAM: adenine deaminase YP_005097163.1 PFAM: Basic membrane protein YP_005097164.1 PFAM: ABC transporter YP_005097165.1 PFAM: Branched-chain amino acid transport system / permease component YP_005097166.1 PFAM: Branched-chain amino acid transport system / permease component YP_005097167.1 PFAM: BioY family YP_005097168.1 PFAM: Citrate transporter YP_005097169.1 PFAM: Aminotransferase class I and II YP_005097171.1 PFAM: Galactose-1-phosphate uridyl transferase, N-terminal domain; TIGRFAM: galactose-1-phosphate uridylyltransferase, family 1 YP_005097172.1 PFAM: Starch synthase catalytic domain; Glycosyl transferases group 1; TIGRFAM: glycogen/starch synthases, ADP-glucose type YP_005097173.1 PFAM: Metallo-beta-lactamase superfamily YP_005097174.1 PFAM: CBS domain; ACT domain YP_005097175.1 PFAM: Uncharacterised protein, DegV family COG1307; TIGRFAM: EDD domain protein, DegV family YP_005097176.1 PFAM: MgsA AAA+ ATPase C terminal; Holliday junction DNA helicase ruvB N-terminus YP_005097177.1 PFAM: S4 domain YP_005097178.1 PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain YP_005097179.1 PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain YP_005097180.1 PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle YP_005097181.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005097182.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005097183.1 PFAM: Starch binding domain; Glycosyl hydrolase family 57; Domain of unknown function (DUF2223) YP_005097184.1 PFAM: Pantoate-beta-alanine ligase; TIGRFAM: pantoate--beta-alanine ligase; cytidyltransferase-related domain YP_005097185.1 PFAM: Methyl-accepting chemotaxis protein (MCP) signaling domain YP_005097186.1 PFAM: CheW-like domain YP_005097187.1 PFAM: MOSC domain YP_005097188.1 PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: tungstate ABC transporter binding protein WtpA YP_005097189.1 PFAM: ABC transporter YP_005097190.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005097191.1 PFAM: Molybdenum Cofactor Synthesis C; Radical SAM superfamily; TIGRFAM: molybdenum cofactor biosynthesis protein A, bacterial YP_005097192.1 PFAM: MoaC family; TIGRFAM: molybdenum cofactor biosynthesis protein MoaC YP_005097193.1 PFAM: Probable molybdopterin binding domain; TIGRFAM: molybdenum cofactor synthesis domain YP_005097194.1 PFAM: Probable molybdopterin binding domain; MoeA N-terminal region (domain I and II); MoeA C-terminal region (domain IV); TIGRFAM: molybdenum cofactor synthesis domain YP_005097195.1 PFAM: Radical SAM superfamily; TIGRFAM: radical SAM additional 4Fe4S-binding domain YP_005097196.1 PFAM: 3-dehydroquinate synthase; Shikimate kinase YP_005097197.1 PFAM: Chorismate synthase; TIGRFAM: chorismate synthase YP_005097198.1 PFAM: VIT family; Rubrerythrin YP_005097203.1 PFAM: Radical SAM superfamily; TIGRFAM: radical SAM additional 4Fe4S-binding domain YP_005097204.1 PFAM: Radical SAM superfamily; TIGRFAM: radical SAM additional 4Fe4S-binding domain YP_005097205.1 PFAM: Radical SAM superfamily; TIGRFAM: radical SAM additional 4Fe4S-binding domain YP_005097206.1 PFAM: ABC-2 type transporter YP_005097207.1 PFAM: ABC transporter YP_005097208.1 PFAM: GTPase of unknown function; TIGRFAM: ribosome biogenesis GTP-binding protein YlqF YP_005097210.1 PFAM: Ribose 5-phosphate isomerase A (phosphoriboisomerase A); FlhB HrpN YscU SpaS Family; TIGRFAM: flhB C-terminus-related protein YP_005097211.1 PFAM: Tetratricopeptide repeat YP_005097214.1 PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signaling domain YP_005097216.1 PFAM: Ribonucleotide reductase, all-alpha domain; Ribonucleotide reductase, barrel domain; TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent YP_005097217.1 PFAM: Bacterial regulatory proteins, tetR family; manually curated YP_005097218.1 PFAM: MMPL family YP_005097219.1 PFAM: Bacterial flagellin N-terminal helical region; Bacterial flagellin C-terminal helical region YP_005097221.1 PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signaling domain YP_005097222.1 PFAM: Glycosyl transferase WecB/TagA/CpsF family; TIGRFAM: bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family YP_005097223.1 PFAM: ATP-dependent protease La (LON) domain; ATPase family associated with various cellular activities (AAA); Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: ATP-dependent protease La YP_005097224.1 PFAM: GTPase of unknown function; TIGRFAM: ribosome biogenesis GTP-binding protein YsxC/EngB; small GTP-binding protein domain YP_005097225.1 PFAM: Dihydrodipicolinate reductase, N-terminus YP_005097227.1 PFAM: Pyridoxal-phosphate dependent enzyme YP_005097229.1 PFAM: D-Lysine 5,6-aminomutase alpha subunit; B12 binding domain YP_005097232.1 PFAM: CAAX amino terminal protease family YP_005097234.1 PFAM: GTPase of unknown function; GTP-binding protein TrmE N-terminus; TIGRFAM: small GTP-binding protein domain; tRNA modification GTPase TrmE YP_005097235.1 PFAM: Acetyltransferase (GNAT) family YP_005097236.1 PFAM: GHMP kinases C terminal; GHMP kinases N terminal domain; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase YP_005097237.1 PFAM: NUDIX domain YP_005097238.1 PFAM: Proteasome subunit; TIGRFAM: ATP-dependent protease HslVU, peptidase subunit YP_005097240.1 PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_005097241.1 PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_005097242.1 PFAM: YicC-like family, N-terminal region; Domain of unknown function (DUF1732); TIGRFAM: TIGR00255 family protein YP_005097243.1 PFAM: Domain of unknown function (DUF370) YP_005097244.1 PFAM: Guanylate kinase; TIGRFAM: guanylate kinase YP_005097249.1 PFAM: Phosphoribosyl transferase domain; TIGRFAM: comF family protein YP_005097251.1 PFAM: Domain of unknown function (DUF1957); Glycosyl hydrolase family 57 YP_005097252.1 PFAM: Pyruvate ferredoxin/flavodoxin oxidoreductase; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family YP_005097253.1 PFAM: 4Fe-4S binding domain; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family YP_005097254.1 PFAM: domain YP_005097255.1 PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YP_005097256.1 PFAM: PPIC-type PPIASE domain YP_005097257.1 PFAM: Pterin binding enzyme; B12 binding domain; Homocysteine S-methyltransferase; TIGRFAM: methylmalonyl-CoA mutase C-terminal domain YP_005097258.1 PFAM: Vitamin B12 dependent methionine synthase, activation domain YP_005097259.1 PFAM: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; TIGRFAM: 6-phosphogluconolactonase YP_005097260.1 PFAM: N-acetylmuramoyl-L-alanine amidase YP_005097261.1 PFAM: Peptidase family M23; LysM domain YP_005097262.1 PFAM: CheB methylesterase; Response regulator receiver domain YP_005097263.1 PFAM: Prokaryotic diacylglycerol kinase YP_005097264.1 PFAM: Pyruvate ferredoxin/flavodoxin oxidoreductase YP_005097265.1 PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YP_005097266.1 PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region YP_005097267.1 PFAM: Radical SAM superfamily; HemN C-terminal region; TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase YP_005097269.1 PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; GTP-binding protein LepA C-terminus; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein domain YP_005097270.1 PFAM: Peptidase family S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc) YP_005097272.1 PFAM: Riboflavin kinase; FAD synthetase; TIGRFAM: riboflavin kinase/FMN adenylyltransferase YP_005097273.1 PFAM: Phosphofructokinase; TIGRFAM: phosphofructokinase YP_005097274.1 PFAM: CheC-like family YP_005097277.1 PFAM: ATP synthase A chain; TIGRFAM: ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) YP_005097278.1 PFAM: ATP synthase subunit C; TIGRFAM: ATP synthase, F0 subunit c YP_005097279.1 PFAM: ATP synthase B/B' CF(0); TIGRFAM: ATP synthase, F0 subunit b YP_005097280.1 PFAM: ATP synthase delta (OSCP) subunit; TIGRFAM: ATP synthase, F1 delta subunit YP_005097281.1 PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: proton translocating ATP synthase, F1 alpha subunit YP_005097282.1 PFAM: ATP synthase; TIGRFAM: ATP synthase, F1 gamma subunit YP_005097283.1 PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: ATP synthase, F1 beta subunit YP_005097284.1 PFAM: ATP synthase, Delta/Epsilon chain, beta-sandwich domain; ATP synthase, Delta/Epsilon chain, long alpha-helix domain; TIGRFAM: ATP synthase, F1 epsilon subunit (delta in mitochondria) YP_005097285.1 PFAM: Lyase; Adenylosuccinate lyase C-terminus; TIGRFAM: adenylosuccinate lyase YP_005097286.1 PFAM: Metallo-beta-lactamase superfamily YP_005097287.1 PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_005097288.1 PFAM: Bacterial trigger factor protein (TF) C-terminus; Bacterial trigger factor protein (TF); TIGRFAM: trigger factor YP_005097289.1 PFAM: Tex-like protein N-terminal domain; S1 RNA binding domain; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat region YP_005097290.1 PFAM: Protein of unknown function (DUF861) YP_005097291.1 PFAM: Flagellar hook-basal body complex protein FliE; TIGRFAM: flagellar hook-basal body complex protein FliE YP_005097292.1 PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; TIGRFAM: flagellar basal-body rod protein FlgC; flagellar basal-body rod protein FlgB YP_005097293.1 PFAM: Flagella basal body rod protein; TIGRFAM: flagellar basal-body rod protein FlgB YP_005097294.1 PFAM: Polysaccharide pyruvyl transferase; TIGRFAM: polysaccharide pyruvyl transferase CsaB YP_005097296.1 PFAM: OsmC-like protein YP_005097297.1 PFAM: ParA/MinD ATPase like; Anion-transporting ATPase YP_005097298.1 PFAM: Initiation factor 2 subunit family; TIGRFAM: eIF-2B alpha/beta/delta-related uncharacterized proteins; S-methyl-5-thioribose-1-phosphate isomerase YP_005097301.1 PFAM: Archaeal ATPase; Protein of unknown function (DUF1703) YP_005097304.1 PFAM: ABC transporter transmembrane region; ABC transporter YP_005097305.1 PFAM: ABC transporter transmembrane region; ABC transporter YP_005097306.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005097307.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005097308.1 PFAM: Putative RNA methylase family UPF0020; manually curated YP_005097309.1 PFAM: HD domain YP_005097311.1 PFAM: Phosphoribosyl transferase domain; TIGRFAM: uracil phosphoribosyltransferase YP_005097312.1 PFAM: ABC-2 type transporter YP_005097313.1 PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase; pyridoxal phosphate-dependent acyltransferase, putative; 2-amino-3-ketobutyrate coenzyme A ligase YP_005097314.1 PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; TIGRFAM: L-threonine 3-dehydrogenase; 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase YP_005097316.1 PFAM: Cyclic nucleotide-binding domain YP_005097317.1 PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase YP_005097318.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2344); TIGRFAM: radical SAM-linked protein YP_005097319.1 PFAM: Response regulator receiver domain YP_005097320.1 PFAM: Stage II sporulation protein E (SpoIIE) YP_005097321.1 PFAM: Domain of unknown function DUF28; TIGRFAM: DNA-binding regulatory protein, YebC/PmpR family YP_005097323.1 PFAM: CheR methyltransferase, SAM binding domain; CheR methyltransferase, all-alpha domain YP_005097324.1 PFAM: Signal peptidase (SPase) II; TIGRFAM: lipoprotein signal peptidase YP_005097325.1 PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase, RluA family YP_005097326.1 PFAM: Uncharacterized ACR, COG1399 YP_005097327.1 PFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32 YP_005097328.1 PFAM: Fatty acid synthesis protein; TIGRFAM: fatty acid/phospholipid synthesis protein PlsX YP_005097329.1 PFAM: SIS domain; Glutamine amidotransferases class-II; TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase (isomerizing) YP_005097330.1 PFAM: Domain of unknown function DUF143; TIGRFAM: iojap-like ribosome-associated protein YP_005097331.1 PFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type YP_005097332.1 PFAM: Cobinamide kinase / cobinamide phosphate guanyltransferase YP_005097333.1 PFAM: Cobalamin-5-phosphate synthase; TIGRFAM: cobalamin 5'-phosphate synthase/cobalamin synthase YP_005097334.1 PFAM: Phosphoglycerate mutase family; TIGRFAM: alpha-ribazole phosphatase YP_005097335.1 PFAM: AIR synthase related protein, N-terminal domain YP_005097340.1 PFAM: Histidine kinase YP_005097341.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain YP_005097342.1 PFAM: ABC transporter YP_005097343.1 PFAM: Predicted permease (DUF2074) YP_005097347.1 PFAM: Radical SAM superfamily; TIGRFAM: radical SAM additional 4Fe4S-binding domain YP_005097349.1 PFAM: ABC-2 type transporter YP_005097350.1 PFAM: ABC transporter YP_005097351.1 PFAM: Uncharacterized conserved protein (DUF2249); Domain of unknown function (DUF1858) YP_005097352.1 PFAM: Ribosomal prokaryotic L21 protein; TIGRFAM: ribosomal protein L21 YP_005097353.1 PFAM: Protein of unknown function (DUF464) YP_005097354.1 PFAM: Ribosomal L27 protein; TIGRFAM: ribosomal protein L27 YP_005097356.1 PFAM: Ribosomal protein L13; TIGRFAM: ribosomal protein L13, bacterial type; ribosomal protein L13, archaeal/eukaryotic YP_005097357.1 PFAM: Ribosomal protein S9/S16 YP_005097358.1 PFAM: Toprim domain; CHC2 zinc finger; DNA primase catalytic core, N-terminal domain; TIGRFAM: DNA primase, catalytic core YP_005097359.1 PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 factor, region 1.1; Sigma-70 region 2; Sigma-70 factor, region 1.2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma factor RpoD, C-terminal domain YP_005097360.1 PFAM: UvrD/REP helicase YP_005097361.1 PFAM: Amino acid permease; TIGRFAM: transporter, basic amino acid/polyamine antiporter (APA) family YP_005097362.1 PFAM: Amidinotransferase; TIGRFAM: arginine deiminase YP_005097364.1 PFAM: FAD binding domain in molybdopterin dehydrogenase; CO dehydrogenase flavoprotein C-terminal domain YP_005097365.1 PFAM: 2Fe-2S iron-sulfur cluster binding domain; [2Fe-2S] binding domain YP_005097366.1 PFAM: Molybdopterin-binding domain of aldehyde dehydrogenase; Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain YP_005097367.1 PFAM: Permease family; TIGRFAM: uracil-xanthine permease YP_005097368.1 PFAM: Protein of unknown function (DUF2877) YP_005097369.1 PFAM: CoA binding domain; CoA-ligase YP_005097370.1 PFAM: Protein of unknown function (DUF1116) YP_005097371.1 PFAM: Putative cyclase YP_005097373.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: thioredoxin-disulfide reductase YP_005097374.1 TIGRFAM: Glutaredoxin-like domain protein YP_005097375.1 PFAM: Transcriptional regulator PadR-like family YP_005097376.1 PFAM: HD domain; PAS fold; Bacterial extracellular solute-binding proteins, family 3; TIGRFAM: PAS domain S-box YP_005097377.1 PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_005097379.1 PFAM: alpha/beta hydrolase fold YP_005097381.1 PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: peptidase T YP_005097382.1 PFAM: subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit YP_005097383.1 PFAM: 4Fe-4S binding domain YP_005097384.1 PFAM: domain; Transketolase, C-terminal domain YP_005097385.1 PFAM: Stage V sporulation protein S (SpoVS) YP_005097387.1 PFAM: Protein of unknown function (DUF1385) YP_005097388.1 PFAM: Ribosomal protein S15; TIGRFAM: ribosomal protein S15, bacterial/organelle YP_005097389.1 PFAM: Amidohydrolase family; TIGRFAM: putative selenium metabolism protein SsnA YP_005097390.1 PFAM: Amidohydrolase family; TIGRFAM: dihydroorotase, multifunctional complex type YP_005097391.1 PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: ornithine carbamoyltransferase; probable carbamoyltransferase YgeW YP_005097392.1 PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: putative selenium metabolism hydrolase; M20/DapE family protein YgeY YP_005097393.1 PFAM: Cytochrome C biogenesis protein transmembrane region YP_005097395.1 PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain YP_005097396.1 PFAM: Ribosomal protein L33; TIGRFAM: ribosomal protein L33, bacterial type YP_005097397.1 PFAM: SecE/Sec61-gamma subunits of protein translocation complex; TIGRFAM: preprotein translocase, SecE subunit, bacterial YP_005097398.1 PFAM: Transcription termination factor nusG; KOW motif; TIGRFAM: transcription termination/antitermination factor NusG YP_005097399.1 PFAM: Ribosomal protein L11, RNA binding domain; Ribosomal protein L11, N-terminal domain; TIGRFAM: 50S ribosomal protein L11 YP_005097400.1 PFAM: Ribosomal protein L1p/L10e family; TIGRFAM: ribosomal protein L1, bacterial/chloroplast YP_005097401.1 PFAM: Ribosomal protein L10 YP_005097402.1 PFAM: Ribosomal protein L7/L12 C-terminal domain; TIGRFAM: ribosomal protein L7/L12 YP_005097403.1 PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 6; RNA polymerase beta subunit external 1 domain; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase, beta subunit YP_005097404.1 PFAM: RNA polymerase Rpb1, domain 2; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 5 YP_005097405.1 PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: ABC transporter periplasmic binding protein, thiB subfamily YP_005097406.1 PFAM: Bacterial regulatory proteins, tetR family YP_005097407.1 PFAM: Radical SAM superfamily YP_005097408.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_005097409.1 PFAM: NUDIX domain YP_005097410.1 PFAM: Phosphomannose isomerase type I YP_005097411.1 PFAM: EamA-like transporter family YP_005097413.1 PFAM: MoeZ/MoeB domain; ThiF family YP_005097415.1 PFAM: S-layer homology domain YP_005097416.1 PFAM: S4 domain; tRNA synthetases class I (W and Y); TIGRFAM: tyrosyl-tRNA synthetase YP_005097417.1 PFAM: Preprotein translocase SecG subunit; TIGRFAM: protein translocase, SecG subunit YP_005097418.1 PFAM: Zinc ribbon domain; TIGRFAM: putative regulatory protein, FmdB family YP_005097419.1 PFAM: S1 RNA binding domain YP_005097420.1 PFAM: Ribosomal protein L31; TIGRFAM: ribosomal protein L31 YP_005097421.1 PFAM: Calcineurin-like phosphoesterase YP_005097423.1 PFAM: Type IV leader peptidase family YP_005097424.1 PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase YP_005097425.1 PFAM: ABC transporter YP_005097426.1 PFAM: SmpB protein; TIGRFAM: SsrA-binding protein YP_005097427.1 PFAM: DisA bacterial checkpoint controller nucleotide-binding; DisA bacterial checkpoint controller linker region; Helix-hairpin-helix motif YP_005097428.1 PFAM: KaiC; TIGRFAM: DNA repair protein RadA YP_005097429.1 PFAM: AAA domain (Cdc48 subfamily); Clp amino terminal domain; C-terminal, D2-small domain, of ClpB protein; ATPase family associated with various cellular activities (AAA) YP_005097430.1 PFAM: Citrate transporter YP_005097431.1 PFAM: Macro domain YP_005097433.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YP_005097434.1 PFAM: Bacterial DNA polymerase III alpha subunit; PHP domain; Exonuclease; OB-fold nucleic acid binding domain; TIGRFAM: exonuclease, DNA polymerase III, epsilon subunit family; DNA polymerase III, alpha chain, Gram-positive type YP_005097435.1 PFAM: Response regulator receiver domain YP_005097436.1 PFAM: Histone deacetylase domain YP_005097437.1 PFAM: Transglutaminase-like superfamily YP_005097438.1 PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain YP_005097439.1 PFAM: Rubredoxin YP_005097441.1 PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signaling domain YP_005097442.1 PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain; TIGRFAM: glutamine synthetase, type I YP_005097444.1 PFAM: Methyltransferase small domain YP_005097445.1 PFAM: ABC transporter YP_005097446.1 PFAM: ABC transporter YP_005097447.1 PFAM: Translation initiation factor IF-3, C-terminal domain; Translation initiation factor IF-3, N-terminal domain; TIGRFAM: translation initiation factor IF-3; manually curated; non-canonical start codon YP_005097448.1 PFAM: Ribosomal protein L35; TIGRFAM: ribosomal protein L35 YP_005097449.1 PFAM: Ribosomal protein L20; TIGRFAM: ribosomal protein L20 YP_005097450.1 PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; Valyl tRNA synthetase tRNA binding arm; TIGRFAM: valyl-tRNA synthetase YP_005097451.1 PFAM: Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: folylpolyglutamate synthase/dihydrofolate synthase YP_005097452.1 PFAM: RuvA, C-terminal domain; Helix-hairpin-helix motif; TIGRFAM: Holliday junction DNA helicase, RuvA subunit YP_005097453.1 PFAM: Nucleotidyl transferase; TIGRFAM: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase YP_005097454.1 PFAM: Phosphoribosyl transferase domain; TIGRFAM: ribose-phosphate pyrophosphokinase YP_005097455.1 PFAM: Ribosomal L25p family; TIGRFAM: ribosomal protein L25, Ctc-form YP_005097456.1 PFAM: Peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase YP_005097458.1 PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor YP_005097459.1 PFAM: Inorganic H+ pyrophosphatase; TIGRFAM: vacuolar-type H(+)-translocating pyrophosphatase YP_005097460.1 PFAM: Phosphofructokinase YP_005097461.1 PFAM: GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain YP_005097462.1 PFAM: ABC transporter YP_005097463.1 PFAM: Alpha amylase, N-terminal ig-like domain; Alpha amylase, catalytic domain YP_005097464.1 PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor YP_005097465.1 PFAM: Glutaredoxin; TIGRFAM: Glutaredoxin-like protein, YruB-family YP_005097466.1 PFAM: Phosphoribulokinase / Uridine kinase family YP_005097467.1 PFAM: Transcriptional regulator PadR-like family YP_005097468.1 PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signaling domain YP_005097469.1 PFAM: Global regulator protein family; TIGRFAM: carbon storage regulator (csrA) YP_005097470.1 PFAM: FliW protein YP_005097471.1 PFAM: Bacterial flagellin N-terminal helical region; Bacterial flagellin C-terminal helical region; TIGRFAM: flagellar hook-associated protein 3 YP_005097472.1 PFAM: Domain of unknown function (DUF1078); TIGRFAM: flagellar hook-associated protein FlgK YP_005097473.1 PFAM: FlgN protein YP_005097474.1 PFAM: Anti-sigma-28 factor, FlgM; TIGRFAM: flagellar biosynthesis anti-sigma factor FlgM YP_005097475.1 PFAM: tRNA synthetase B5 domain; B3/4 domain; Ferredoxin-fold anticodon binding domain; Putative tRNA binding domain; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial YP_005097476.1 PFAM: tRNA synthetases class II core domain (F); Aminoacyl tRNA synthetase class II, N-terminal domain; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit YP_005097477.1 PFAM: Putative transposase, YhgA-like; TIGRFAM: conserved hypothetical protein (putative transposase or invertase) YP_005097480.1 PFAM: Transaldolase; TIGRFAM: fructose-6-phosphate aldolase, TalC/MipB family YP_005097482.1 PFAM: Ribonuclease E/G family; TIGRFAM: ribonuclease, Rne/Rng family YP_005097484.1 PFAM: Prolyl oligopeptidase family YP_005097485.1 PFAM: Bacterial flagellin N-terminal helical region; Bacterial flagellin C-terminal helical region YP_005097486.1 PFAM: Bacterial flagellin N-terminal helical region; Bacterial flagellin C-terminal helical region YP_005097487.1 PFAM: Protein export membrane protein; SecD/SecF GG Motif; TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF YP_005097488.1 PFAM: Protein export membrane protein; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family YP_005097489.1 PFAM: Preprotein translocase subunit; TIGRFAM: preprotein translocase, YajC subunit YP_005097492.1 PFAM: Asp/Glu/Hydantoin racemase; TIGRFAM: glutamate racemase YP_005097493.1 PFAM: P-loop ATPase protein family YP_005097494.1 PFAM: Sporulation Regulator WhiA N terminal; Sporulation Regulator WhiA C terminal domain; TIGRFAM: conserved hypothetical protein YP_005097495.1 PFAM: ATP cone domain; TIGRFAM: transcriptional regulator NrdR YP_005097496.1 PFAM: domain; Transcription elongation factor, GreA/GreB, C-term; TIGRFAM: transcription elongation factor GreA YP_005097497.1 PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial YP_005097498.1 PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28 YP_005097499.1 PFAM: PilZ domain YP_005097503.1 PFAM: Glycosyl transferases group 1; Domain of unknown function (DUF3492) YP_005097505.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2194) YP_005097506.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase family; TIGRFAM: 5,10-methenyltetrahydrofolate synthetase YP_005097507.1 PFAM: Carbon-nitrogen hydrolase YP_005097508.1 PFAM: TM1410 hypothetical-related protein; TIGRFAM: possible cysteinyl-tRNA synthetase, Methanococcus type YP_005097509.1 PFAM: Protein of unknown function, DUF265 YP_005097510.1 PFAM: Bacitracin resistance protein BacA; TIGRFAM: undecaprenyl-diphosphatase UppP YP_005097511.1 PFAM: Small integral membrane protein (DUF2273); Domain of unknown function (DUF368) YP_005097512.1 PFAM: ABC-type uncharacterized transport system YP_005097516.1 PFAM: Cache domain; HAMP domain; Methyl-accepting chemotaxis protein (MCP) signaling domain YP_005097517.1 PFAM: Dehydroquinase class II; TIGRFAM: 3-dehydroquinate dehydratase, type II YP_005097518.1 PFAM: Helicase conserved C-terminal domain; DbpA RNA binding domain; DEAD/DEAH box helicase YP_005097519.1 PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase YP_005097520.1 PFAM: Peptidase family U32 YP_005097521.1 PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; TIGRFAM: signal recognition particle-docking protein FtsY YP_005097522.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2225) YP_005097523.1 PFAM: 3D domain; Peptidase family M23; LysM domain YP_005097524.1 PFAM: Transcriptional regulator; TIGRFAM: Rrf2 family protein YP_005097525.1 PFAM: tRNA methyl transferase; TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase YP_005097526.1 PFAM: Cytidylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase, bacterial; cytidyltransferase-related domain YP_005097527.1 PFAM: Elongation factor TS; UBA/TS-N domain; TIGRFAM: translation elongation factor Ts YP_005097528.1 PFAM: Amino acid kinase family; TIGRFAM: uridylate kinase YP_005097529.1 PFAM: Enolase, N-terminal domain; Enolase, C-terminal TIM barrel domain; TIGRFAM: phosphopyruvate hydratase YP_005097531.1 PFAM: M42 glutamyl aminopeptidase YP_005097532.1 PFAM: M42 glutamyl aminopeptidase YP_005097533.1 PFAM: M42 glutamyl aminopeptidase YP_005097534.1 PFAM: Septum formation inhibitor MinC, C-terminal domain; TIGRFAM: septum site-determining protein MinC YP_005097535.1 PFAM: Methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain YP_005097536.1 PFAM: B12 binding domain; TIGRFAM: methylmalonyl-CoA mutase C-terminal domain YP_005097537.1 PFAM: ArgK protein; TIGRFAM: LAO/AO transport system ATPase YP_005097538.1 PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: methylmalonyl-CoA epimerase YP_005097539.1 PFAM: Carboxyl transferase domain YP_005097540.1 PFAM: Oxaloacetate decarboxylase, gamma chain YP_005097541.1 PFAM: Biotin-requiring enzyme YP_005097543.1 PFAM: short chain dehydrogenase YP_005097544.1 PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; Zinc finger found in FPG and IleRS; TIGRFAM: isoleucyl-tRNA synthetase YP_005097545.1 PFAM: Response regulator receiver domain YP_005097546.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box YP_005097547.1 PFAM: Uncharacterized BCR, YitT family COG1284; Uncharacterized protein conserved in bacteria (DUF2179) YP_005097548.1 PFAM: Thiamine biosynthesis protein (ThiI); THUMP domain; TIGRFAM: thiazole biosynthesis/tRNA modification protein ThiI YP_005097549.1 PFAM: Acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases YP_005097550.1 PFAM: Uncharacterised ACR, COG1259 YP_005097551.1 PFAM: Polyprenyl synthetase YP_005097554.1 PFAM: Prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase YP_005097555.1 PFAM: Cupin domain YP_005097556.1 PFAM: TatD related DNase; TIGRFAM: hydrolase, TatD family YP_005097557.1 PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain; TIGRFAM: glutamine synthetase, type I YP_005097558.1 PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate thymidylylransferase, long form YP_005097559.1 PFAM: Inositol monophosphatase family YP_005097560.1 PFAM: Radical SAM superfamily; TIGRFAM: radical SAM family uncharacterized protein YP_005097561.1 PFAM: Receptor family ligand binding region YP_005097562.1 PFAM: Branched-chain amino acid transport system / permease component YP_005097563.1 PFAM: Branched-chain amino acid transport system / permease component YP_005097564.1 PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter YP_005097565.1 PFAM: ABC transporter YP_005097566.1 PFAM: QueT transporter YP_005097568.1 PFAM: DnaB-like helicase N terminal domain; DnaB-like helicase C terminal domain; TIGRFAM: replicative DNA helicase YP_005097569.1 PFAM: RNB domain; Ribonuclease B OB domain; S1 RNA binding domain; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonucleases YP_005097570.1 PFAM: Ferritin-like domain YP_005097572.1 PFAM: Iron only hydrogenase large subunit, C-terminal domain; NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; Iron hydrogenase small subunit; TIGRFAM: hydrogenase, Fe-only YP_005097573.1 PFAM: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; 4Fe-4S binding domain; Respiratory-chain NADH dehydrogenase 24 Kd subunit; Respiratory-chain NADH dehydrogenase 51 Kd subunit; SLBB domain YP_005097575.1 PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit YP_005097577.1 PFAM: Chaperonin 10 Kd subunit YP_005097578.1 PFAM: TCP-1/cpn60 chaperonin family; TIGRFAM: chaperonin GroL YP_005097579.1 PFAM: Peptidase family M20/M25/M40; TIGRFAM: dipeptidase, putative YP_005097580.1 PFAM: C4-dicarboxylate anaerobic carrier YP_005097583.1 PFAM: Flagellar hook capping protein YP_005097584.1 PFAM: Flagella basal body rod protein; Domain of unknown function (DUF1078); Flagellar basal body protein FlaE; TIGRFAM: fagellar hook-basal body proteins YP_005097585.1 PFAM: Flagellar protein (FlbD) YP_005097586.1 PFAM: MotA/TolQ/ExbB proton channel family YP_005097587.1 PFAM: OmpA family YP_005097588.1 PFAM: Flagellar basal body-associated protein FliL YP_005097589.1 PFAM: Surface presentation of antigens (SPOA); Flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM YP_005097590.1 PFAM: Surface presentation of antigens (SPOA); CheC-like family; TIGRFAM: flagellar motor switch protein FliN YP_005097592.1 PFAM: Metallo-beta-lactamase superfamily YP_005097593.1 PFAM: ABC transporter transmembrane region; ABC transporter; manually curated YP_005097594.1 PFAM: ABC transporter transmembrane region; ABC transporter YP_005097595.1 PFAM: Methyltransferase domain YP_005097596.1 PFAM: Major Facilitator Superfamily YP_005097598.1 PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle YP_005097599.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005097600.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005097601.1 PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain YP_005097602.1 PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain YP_005097603.1 PFAM: Cache domain; HAMP domain; Methyl-accepting chemotaxis protein (MCP) signaling domain YP_005097604.1 PFAM: Cache domain; HAMP domain; Methyl-accepting chemotaxis protein (MCP) signaling domain YP_005097605.1 PFAM: Cache domain; HAMP domain; Methyl-accepting chemotaxis protein (MCP) signaling domain YP_005097606.1 PFAM: Class II Aldolase and Adducin N-terminal domain; TIGRFAM: L-ribulose-5-phosphate 4-epimerase YP_005097607.1 PFAM: Aminotransferase class I and II YP_005097608.1 PFAM: Ribonuclease HII YP_005097609.1 PFAM: MazG nucleotide pyrophosphohydrolase domain; TIGRFAM: MazG family protein YP_005097611.1 PFAM: Domain of unknown function DUF59 YP_005097612.1 PFAM: Methyltransferase small domain; TIGRFAM: HemK family putative methylases; protein-(glutamine-N5) methyltransferase, release factor-specific YP_005097613.1 PFAM: Bacterial extracellular solute-binding proteins, family 3 YP_005097614.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_005097615.1 PFAM: HD domain; Response regulator receiver domain YP_005097616.1 PFAM: YbaK / prolyl-tRNA synthetases associated domain; Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: prolyl-tRNA synthetase, family II YP_005097617.1 PFAM: tRNA synthetases class I (M); Anticodon-binding domain; Putative tRNA binding domain; TIGRFAM: methionyl-tRNA synthetase C-terminal region/beta chain; methionyl-tRNA synthetase YP_005097618.1 PFAM: DNA gyrase C-terminal domain, beta-propeller; DNA gyrase/topoisomerase IV, subunit A; TIGRFAM: DNA gyrase, A subunit YP_005097619.1 PFAM: Archease protein family (DUF101/UPF0211) YP_005097620.1 PFAM: LexA DNA binding domain YP_005097621.1 PFAM: Ribose/Galactose Isomerase; TIGRFAM: ribose 5-phosphate isomerase B; sugar-phosphate isomerases, RpiB/LacA/LacB family YP_005097622.1 PFAM: Histone deacetylase domain YP_005097623.1 PFAM: 3-dehydroquinate synthase YP_005097625.1 PFAM: Helix-hairpin-helix motif; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat region; comEA protein YP_005097626.1 PFAM: Uncharacterized BCR, COG1636 YP_005097627.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_005097628.1 PFAM: Protein of unknown function (DUF342) YP_005097630.1 PFAM: Thymidylate synthase complementing protein; TIGRFAM: thymidylate synthase, flavin-dependent YP_005097631.1 PFAM: DRTGG domain YP_005097632.1 PFAM: CBS domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_005097633.1 PFAM: DRTGG domain YP_005097634.1 PFAM: PHP domain YP_005097635.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_005097636.1 PFAM: Surface antigen variable number repeat YP_005097638.1 PFAM: D-Ala-D-Ala carboxypeptidase 3 (S13) family; TIGRFAM: D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family YP_005097639.1 PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; TIGRFAM: diaminopimelate decarboxylase YP_005097640.1 PFAM: L,D-transpeptidase catalytic domain YP_005097641.1 PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle YP_005097642.1 PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle YP_005097643.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005097644.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005097645.1 PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain YP_005097646.1 PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain YP_005097647.1 PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent, prokaryotic type YP_005097648.1 PFAM: PUA domain; Amino acid kinase family; TIGRFAM: glutamate 5-kinase YP_005097649.1 PFAM: Aldehyde dehydrogenase family; TIGRFAM: gamma-glutamyl phosphate reductase YP_005097650.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; TIGRFAM: pyrroline-5-carboxylate reductase YP_005097651.1 PFAM: Aconitase C-terminal domain; TIGRFAM: 3-isopropylmalate dehydratase, small subunit YP_005097652.1 PFAM: Aconitase family (aconitate hydratase); TIGRFAM: 3-isopropylmalate dehydratase, large subunit; homoaconitate hydratase family protein YP_005097653.1 PFAM: Citrate synthase; TIGRFAM: 2-methylcitrate synthase/citrate synthase II YP_005097654.1 PFAM: LVIVD repeat YP_005097656.1 PFAM: Protein of unknown function (DUF1703); Predicted AAA-ATPase YP_005097657.1 PFAM: Beta propeller domain; LVIVD repeat YP_005097659.1 PFAM: Divergent AAA domain YP_005097660.1 PFAM: Predicted AAA-ATPase YP_005097661.1 PFAM: ABC transporter YP_005097662.1 PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family YP_005097663.1 PFAM: Bacterial extracellular solute-binding proteins, family 3 YP_005097664.1 PFAM: Ferric uptake regulator family YP_005097665.1 PFAM: Tetratricopeptide repeat YP_005097666.1 PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF); TIGRFAM: periplasmic serine protease, Do/DeqQ family YP_005097667.1 PFAM: ABC transporter; Binding-protein-dependent transport system inner membrane component YP_005097668.1 PFAM: UvrB/uvrC motif; UvrC Helix-hairpin-helix N-terminal; GIY-YIG catalytic domain; TIGRFAM: excinuclease ABC, C subunit YP_005097669.1 PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_005097670.1 PFAM: Protein of unknown function (DUF501) YP_005097671.1 PFAM: Ribosomal protein L11 methyltransferase (PrmA); TIGRFAM: ribosomal protein L11 methyltransferase YP_005097672.1 PFAM: PAP2 superfamily YP_005097673.1 PFAM: Rhomboid family YP_005097674.1 PFAM: Glucose inhibited division protein A; TIGRFAM: glucose-inhibited division protein A YP_005097675.1 PFAM: AhpC/TSA family YP_005097676.1 PFAM: tRNA (Uracil-5-)-methyltransferase; TIGRFAM: 23S rRNA (uracil-5-)-methyltransferase RumA YP_005097678.1 PFAM: Alpha amylase, catalytic domain; Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Bacterial pullanase-associated domain; TIGRFAM: pullulanase, type I YP_005097679.1 PFAM: MraW methylase family; TIGRFAM: S-adenosyl-methyltransferase MraW YP_005097681.1 PFAM: Penicillin binding protein transpeptidase domain; PASTA domain YP_005097682.1 PFAM: DNA polymerase III, delta subunit YP_005097684.1 PFAM: Archaeal ATPase; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_005097685.1 PFAM: PHP domain YP_005097686.1 PFAM: FlaG protein YP_005097687.1 PFAM: Flagellar hook-associated protein 2 C-terminus; Flagellin hook IN motif YP_005097688.1 PFAM: Carboxypeptidase Taq (M32) metallopeptidase YP_005097689.1 PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; TIGRFAM: phosphoglucosamine mutase YP_005097690.1 PFAM: Response regulator receiver domain YP_005097691.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_005097694.1 PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YP_005097695.1 PFAM: Formate--tetrahydrofolate ligase YP_005097697.1 PFAM: Response regulator receiver domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_005097698.1 PFAM: CheB methylesterase; manually curated; non-canonical start codon YP_005097699.1 PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Hpt domain YP_005097701.1 PFAM: CheR methyltransferase, SAM binding domain YP_005097702.1 PFAM: HD domain YP_005097703.1 PFAM: Permease family YP_005097704.1 PFAM: Bacterial regulatory proteins, luxR family YP_005097705.1 PFAM: MMPL family YP_005097708.1 PFAM: Basic membrane protein YP_005097709.1 PFAM: Calcineurin-like phosphoesterase YP_005097711.1 PFAM: LVIVD repeat YP_005097712.1 PFAM: TM1410 hypothetical-related protein; TIGRFAM: possible cysteinyl-tRNA synthetase, Methanococcus type YP_005097713.1 PFAM: EamA-like transporter family YP_005097714.1 PFAM: D-aminopeptidase YP_005097715.1 PFAM: HhH-GPD superfamily base excision DNA repair protein YP_005097716.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; TIGRFAM: D-3-phosphoglycerate dehydrogenase YP_005097717.1 PFAM: Protein of unknown function (DUF1703); Predicted AAA-ATPase YP_005097719.1 PFAM: Protein of unknown function(DUF2089) YP_005097721.1 PFAM: Metallo-beta-lactamase superfamily YP_005097722.1 PFAM: Major Facilitator Superfamily YP_005097723.1 PFAM: Peptidase family M3; TIGRFAM: oligoendopeptidase, M3 family YP_005097725.1 PFAM: Galactokinase galactose-binding signature; GHMP kinases C terminal; GHMP kinases N terminal domain; TIGRFAM: galactokinase YP_005097726.1 PFAM: Galactose-1-phosphate uridyl transferase, C-terminal domain; Galactose-1-phosphate uridyl transferase, N-terminal domain; TIGRFAM: galactose-1-phosphate uridylyltransferase, family 1 YP_005097727.1 PFAM: Melibiase YP_005097728.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005097729.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005097730.1 PFAM: Bacterial extracellular solute-binding protein YP_005097731.1 PFAM: Bacterial regulatory proteins, lacI family; family YP_005097732.1 PFAM: AzlC protein; TIGRFAM: 4-azaleucine resistance probable transporter AzlC YP_005097733.1 PFAM: Branched-chain amino acid transport protein (AzlD) YP_005097736.1 PFAM: Bacterial regulatory proteins, lacI family YP_005097737.1 PFAM: Bacterial extracellular solute-binding protein YP_005097738.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005097739.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005097740.1 PFAM: Domain of unknown function (DUF377) YP_005097741.1 PFAM: Dinitrogenase iron-molybdenum cofactor YP_005097742.1 PFAM: Major Facilitator Superfamily YP_005097743.1 PFAM: Indigoidine synthase A like protein YP_005097744.1 PFAM: MarR family; pfkB family carbohydrate kinase YP_005097745.1 PFAM: Predicted membrane protein (DUF2078) YP_005097746.1 PFAM: Uncharacterized protein domain (DUF2202) YP_005097747.1 TIGRFAM: putative DNA modification/repair radical SAM protein YP_005097748.1 TIGRFAM: probable DNA metabolism protein YP_005097750.1 PFAM: Chorismate mutase type I; TIGRFAM: monofunctional chorismate mutase, gram positive type, clade 1 YP_005097751.1 PFAM: Prismane/CO dehydrogenase family; TIGRFAM: hydroxylamine reductase YP_005097752.1 PFAM: MMPL family YP_005097754.1 PFAM: Bacterial regulatory proteins, tetR family YP_005097755.1 PFAM: Archaeal ATPase YP_005097757.1 PFAM: Major Facilitator Superfamily YP_005097759.1 PFAM: ABC transporter transmembrane region YP_005097763.1 PFAM: ABC transporter YP_005097767.1 PFAM: Membrane dipeptidase (Peptidase family M19) YP_005097769.1 PFAM: Bacterial extracellular solute-binding protein YP_005097770.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005097771.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005097772.1 PFAM: ABC transporter; TOBE domain YP_005097773.1 PFAM: Glycosyl transferases group 1 YP_005097774.1 PFAM: Bacterial regulatory proteins, lacI family; family YP_005097775.1 PFAM: Acetyltransferase (GNAT) family YP_005097776.1 PFAM: Magnesium chelatase, subunit ChlI; TIGRFAM: Mg chelatase-related protein YP_005097777.1 PFAM: Periplasmic solute binding protein family YP_005097778.1 PFAM: Ferric uptake regulator family YP_005097779.1 PFAM: ABC transporter YP_005097780.1 PFAM: ABC 3 transport family YP_005097781.1 PFAM: CorA-like Mg2+ transporter protein YP_005097784.1 PFAM: ABC transporter YP_005097786.1 PFAM: Thymidine kinase YP_005097787.1 PFAM: Competence protein; TIGRFAM: ComEC/Rec2-related protein YP_005097788.1 PFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Metalloenzyme superfamily; TIGRFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal form YP_005097789.1 PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase; 2-haloalkanoic acid dehalogenase, type II YP_005097790.1 PFAM: Domain of unknown function (DUF364) YP_005097791.1 IMG reference gene:2509099670_SP