-- dump date 20140619_134847 -- class Genbank::CDS -- table cds_note -- id note YP_863936.1 KEGG: pca:Pcar_0001 chromosomal replication initiator protein DnaA; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator, DnaA C-terminal domain; Chromosomal replication initiator, DnaA; SMART: ATPase AAA YP_863937.1 KEGG: gsu:GSU0001 DNA polymerase III beta subunit; TIGRFAM: DNA polymerase III subunit beta; PFAM: DNA polymerase III beta chain YP_863938.1 TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein; KEGG: gsu:GSU0002 RecF protein YP_863939.1 KEGG: psp:PSPPH_1028 ATP binding protein YP_863940.1 KEGG: psp:PSPPH_1029 hypothetical protein YP_863941.1 KEGG: vvy:VV0014 DNA gyrase subunit B; TIGRFAM: DNA gyrase subunit beta; PFAM: DNA gyrase subunit B domain protein; ATP-binding region, ATPase domain protein domain protein; TOPRIM domain protein; DNA topoisomerase, type IIA, subunit B, region 2 domain protein; SMART: DNA topoisomerase II YP_863944.1 TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ, family 3; KEGG: yps:YPTB1692 flagellar biosynthetic protein FliQ YP_863945.1 TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: cvi:CV3124 flagellar biosynthetic protein FliR YP_863946.1 TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; KEGG: sat:SYN_02832 flagellar biosynthesis pathway component YP_863947.1 PFAM: regulatory protein RecX; KEGG: sde:Sde_1289 RecX protein YP_863948.1 KEGG: nha:Nham_1621 alanyl-tRNA synthetase; TIGRFAM: alanyl-tRNA synthetase; PFAM: alanyl-tRNA synthetase, class IIc; phosphoesterase, DHHA1; threonyl/alanyl tRNA synthetase, SAD YP_863949.1 KEGG: ccr:CC3223 phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: phosphomethylpyrimidine kinase type-1 YP_863950.1 heat shock protein involved in degradation of misfolded proteins YP_863951.1 KEGG: dsy:DSY0277 hypothetical protein YP_863952.1 heat shock protein involved in degradation of misfolded proteins YP_863954.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate YP_863955.1 KEGG: bsu:BG13824 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase YP_863956.1 PFAM: peptidase A24A, prepilin type IV; peptidase A24A domain protein; KEGG: gme:Gmet_0959 peptidase A24A-like YP_863957.1 KEGG: gsu:GSU1490 shikimate 5-dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase; PFAM: shikimate/quinate 5-dehydrogenase; shikimate dehydrogenase substrate binding, N-terminal domain protein YP_863958.1 PFAM: protein of unknown function DUF34; KEGG: ppu:PP1302 conserved hypothetical protein TIGR00486 YP_863960.1 KEGG: tcx:Tcr_0123 uroporphyrinogen decarboxylase; TIGRFAM: uroporphyrinogen decarboxylase; PFAM: uroporphyrinogen decarboxylase (URO-D) YP_863961.1 KEGG: tcx:Tcr_0501 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: radical SAM protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB YP_863962.1 KEGG: csa:Csal_0796 protoporphyrinogen oxidase; TIGRFAM: protoporphyrinogen oxidase; PFAM: amine oxidase; FAD dependent oxidoreductase YP_863963.1 KEGG: rru:Rru_A3611 DNA polymerase III epsilon subunit; TIGRFAM: DNA polymerase III subunit epsilon; PFAM: exonuclease, RNase T and DNA polymerase III; SMART: exonuclease YP_863964.1 KEGG: vvy:VVA0641 cytochrome C553 YP_863965.1 KEGG: bbr:BB0776 hypothetical protein YP_863966.1 KEGG: bbr:BB3333 8-amino-7-oxononanoate synthase; TIGRFAM: 8-amino-7-oxononanoate synthase; PFAM: aminotransferase, class I and II YP_863967.1 KEGG: gox:GOX0721 biotin synthesis protein BioH YP_863968.1 TIGRFAM: biotin biosynthesis protein BioC; PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: bpa:BPP1773 biotin synthesis protein YP_863969.1 KEGG: lic:LIC11777 biotin synthase; TIGRFAM: biotin synthase; PFAM: radical SAM protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB YP_863971.1 TIGRFAM: dethiobiotin synthase; KEGG: syf:Synpcc7942_0030 dethiobiotin synthase YP_863972.1 TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: mag:amb2763 adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_863973.1 PFAM: hypothetical protein YP_863974.1 KEGG: tma:TM1077 pantoate--beta-alanine ligase; TIGRFAM: pantoate--beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase YP_863975.1 KEGG: sat:SYN_02773 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase YP_863976.1 TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG: tel:tll0178 2-amino-4-hydroxy-6-hydroxymethyldihydropteridin e pyrophosphokinase YP_863977.1 PFAM: peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins; KEGG: dde:Dde_0064 D-alanyl-D-alanine carboxypeptidase YP_863978.1 KEGG: tcx:Tcr_1751 peptidase M14, carboxypeptidase A YP_863979.1 catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate YP_863980.1 TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; KEGG: mag:amb3873 tetrahydrodipicolinate N-succinyltransferase YP_863981.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica. YP_863982.1 KEGG: mca:MCA0256 ferredoxin 2Fe-2S YP_863983.1 PFAM: DsrC family protein; KEGG: tbd:Tbd_2480 sulfite reductase YP_863984.1 PFAM: nitrate reductase, subunit gamma; KEGG: mag:amb3373 nitrate reductase subunit gamma YP_863985.1 KEGG: mag:amb3374 Fe-S oxidoreductase YP_863986.1 KEGG: bpm:BURPS1710b_3051 ribonuclease PH; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease YP_863987.1 KEGG: pol:Bpro_1341 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: radical SAM protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB YP_863988.1 PFAM: transposase, IS4 family protein; KEGG: gka:GK3116 transposase YP_863989.1 PFAM: chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: rme:Rmet_5641 methyl-accepting chemotaxis sensory transducer YP_863990.1 KEGG: dde:Dde_1553 alanine dehydrogenase; TIGRFAM: alanine dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; shikimate/quinate 5-dehydrogenase; alanine dehydrogenase/PNT domain protein YP_863991.1 PFAM: peptidase M48, Ste24p; KEGG: eli:ELI_12635 Zn-dependent protease YP_863992.1 TIGRFAM: flagellar export protein FliJ YP_863993.1 KEGG: bba:Bd3399 hypothetical protein YP_863994.1 PFAM: flagellin domain protein; KEGG: pha:PSHAa0781 flagellin YP_863997.1 PFAM: flagellin domain protein; KEGG: neu:NE1593 flagellin YP_863998.1 PFAM: flagellin domain protein; KEGG: gsu:GSU3038 flagellin FliC YP_863999.1 PFAM: flagellin domain protein; KEGG: pca:Pcar_1115 flagellin YP_864000.1 PFAM: flagellin domain protein; KEGG: pca:Pcar_1115 flagellin YP_864001.1 PFAM: flagellin domain protein; KEGG: pca:Pcar_1115 flagellin YP_864002.1 KEGG: sai:Saci_2354 hypothetical protein YP_864003.1 PFAM: flagellin domain protein; KEGG: pca:Pcar_1115 flagellin YP_864004.1 PFAM: flagellin domain protein; KEGG: pca:Pcar_1115 flagellin YP_864005.1 PFAM: flagellin domain protein; KEGG: pca:Pcar_1115 flagellin YP_864006.1 PFAM: flagellin domain protein; KEGG: pca:Pcar_1115 flagellin YP_864007.1 PFAM: flagellin domain protein; KEGG: pca:Pcar_1115 flagellin YP_864008.1 PFAM: flagellin domain protein; KEGG: pca:Pcar_1115 flagellin YP_864011.1 PFAM: flagellin domain protein; KEGG: ade:Adeh_1342 flagellin-like YP_864012.1 PFAM: flagellin domain protein; KEGG: mfa:Mfla_1986 flagellin-like protein YP_864013.1 PFAM: inositol monophosphatase; KEGG: cbu:CBU_1133 inositol-1-monophosphatase YP_864014.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; KEGG: lic:LIC13451 flagellar hook-associated protein 1 YP_864015.1 KEGG: sat:SYN_02811 flagellin and related hook-associated proteins YP_864016.1 PFAM: protein of unknown function DUF180; KEGG: dsy:DSY3025 hypothetical protein YP_864017.1 PFAM: flagellin domain protein; KEGG: pha:PSHAa0781 flagellin YP_864018.1 PFAM: flagellar protein FlaG protein; KEGG: cvi:CV3877 Flagellin protein YP_864019.1 PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: gme:Gmet_0444 flagellar hook-associated protein 2-like YP_864020.1 PFAM: flagellar protein FliS; KEGG: bba:Bd0611 flagellar protein FliS YP_864021.1 PFAM: flagellar protein FliS; KEGG: bba:Bd0611 flagellar protein FliS YP_864025.1 PFAM: shikimate kinase; KEGG: lic:LIC20099 shikimate kinase YP_864027.1 TIGRFAM: integration host factor, subunit alpha; PFAM: histone family protein DNA-binding protein; KEGG: ade:Adeh_1969 integration host factor, subunit alpha YP_864028.1 TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: psp:PSPPH_4384 glutamate-1-semialdehyde-2,1-aminomutase YP_864030.1 PFAM: beta-lactamase; KEGG: tbd:Tbd_1103 hydrolase YP_864032.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: ATPase AAA; KEGG: mca:MCA1096 sigma-54-dependent transcriptional regulator YP_864033.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding domain protein; KEGG: noc:Noc_0363 dihydroorotate dehydrogenase electron transfer subunit YP_864035.1 PFAM: nitrogen regulatory protein P-II; KEGG: mma:MM0930 nitrogen regulatory protein P-II YP_864036.1 PFAM: protein of unknown function DUF1538; KEGG: wsu:WS0013 hypothetical protein YP_864037.1 KEGG: gsu:GSU1272 dihydroorotase, multifunctional complex type; TIGRFAM: dihydroorotase; PFAM: amidohydrolase; amidohydrolase YP_864038.1 TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; KEGG: pca:Pcar_1615 aspartate carbamoyltransferase YP_864039.1 PFAM: phosphoribosyltransferase; KEGG: dra:DR1110 pyrimidine operon regulatory protein PyrR YP_864040.1 PFAM: NUDIX hydrolase; KEGG: pfl:PFL_0541 ADP-ribose pyrophosphatase YP_864042.1 KEGG: pho:PH0433 hypothetical protein YP_864043.1 KEGG: rpb:RPB_1530 conserved hypothetical protein ZK105.3 YP_864045.1 PFAM: permease; KEGG: tbd:Tbd_1427 permease YP_864046.1 KEGG: rpd:RPD_3416 thiol-disulfide isomerase and thioredoxins YP_864047.1 KEGG: xcb:XC_3587 hypothetical protein YP_864048.1 KEGG: cte:CT0910 hypothetical protein YP_864049.1 KEGG: dsy:DSY3991 hypothetical protein YP_864050.1 KEGG: tbd:Tbd_0555 nitric oxide reductase activation protein YP_864051.1 KEGG: tbd:Tbd_0556 iron-sulfur cluster-binding protein YP_864052.1 PFAM: ATPase associated with various cellular activities, AAA_5; CbbQ/NirQ/NorQ C-terminal domain protein; KEGG: tbd:Tbd_0558 nitric oxide reductase activation protein NorQ YP_864053.1 PFAM: cytochrome C oxidase subunit I; KEGG: hch:HCH_04410 nitric oxide reductase large subunit YP_864054.1 PFAM: cytochrome C, class I; KEGG: hch:HCH_04411 cytochrome C, mono- and diheme variants YP_864057.1 TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor G, domain IV; KEGG: gsu:GSU1933 translation elongation factor G YP_864059.1 KEGG: ilo:IL1814 hypothetical protein YP_864060.1 PFAM: peptidase M16 domain protein; KEGG: pca:Pcar_3059 peptidase, M16 family YP_864061.1 PFAM: protein of unknown function DUF486; KEGG: neu:NE1692 hypothetical protein YP_864062.1 TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: noc:Noc_0439 type I restriction-modification system M subunit YP_864064.1 KEGG: eba:ebA2608 DNA-binding protein YP_864065.1 PFAM: restriction modification system DNA specificity domain; KEGG: sab:SAB0265 type-I specificity determinant subunit YP_864066.1 KEGG: cch:Cag_1524 DNA-damage-inducible protein D YP_864067.1 KEGG: mfa:Mfla_1215 type I site-specific deoxyribonuclease, HsdR family; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases-like YP_864068.1 TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: rru:Rru_A3621 methylated-DNA-(protein)-cysteine S-methyltransferase YP_864069.1 PFAM: ribosomal protein L31; KEGG: gme:Gmet_0377 ribosomal protein L31 YP_864070.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_864071.1 PFAM: tRNA pseudouridine synthase D, TruD; KEGG: dge:Dgeo_0594 pseudouridylate synthase YP_864072.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding domain protein; KEGG: plt:Plut_0809 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductase-like YP_864073.1 KEGG: sdy:SDY_3404 stringent starvation protein B YP_864074.1 KEGG: sru:SRU_1567 hypothetical protein YP_864075.1 KEGG: rru:Rru_A3350 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase YP_864076.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: ppu:PP0067 methionyl-tRNA formyltransferase YP_864077.1 PFAM: peptidase M48, Ste24p; KEGG: cvi:CV4263 heat shock protein YP_864079.1 PFAM: protein of unknown function DUF344; KEGG: ana:alr2191 hypothetical protein YP_864080.1 PFAM: ATPase AAA, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA; SMART: ATPase AAA; KEGG: dsy:DSY1668 hypothetical protein YP_864081.1 PFAM: polysaccharide deacetylase; KEGG: dde:Dde_3250 polysaccharide deacetylase family protein YP_864083.1 TIGRFAM: HAD-superfamily phosphatase, subfamily IIIC; FkbH like protein; KEGG: rsp:RSP_1535 hypothetical protein YP_864084.1 KEGG: cjr:CJE1501 hypothetical protein YP_864085.1 PFAM: sulfate transporter/antisigma-factor antagonist STAS YP_864089.1 PFAM: type IV pilus assembly PilZ; KEGG: dps:DP0663 hypothetical protein YP_864090.1 PFAM: nucleoside recognition domain protein; KEGG: mag:amb1309 uncharacterized membrane protein YP_864091.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: ppr:PBPRA2447 N-acetylglucosaminyl transferase YP_864092.1 PFAM: AsmA family protein; KEGG: noc:Noc_2265 conserved hypothetical protein, AsmA YP_864093.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: mag:amb1437 nucleoside-diphosphate-sugar epimerase YP_864094.1 KEGG: afm:Afu2g17000 hypothetical protein YP_864095.1 KEGG: gme:Gmet_0193 hypothetical protein YP_864096.1 TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein; KEGG: hit:NTHI1618 thiamine-monophosphate kinase YP_864097.1 TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: deh:cbdb_A1206 N utilization substance protein B YP_864098.1 PFAM: 6,7-dimethyl-8-ribityllumazine synthase; KEGG: lip:LI0154 riboflavin synthase beta-chain YP_864099.1 PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: sat:SYN_02371 GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone-4-phosphate synthase YP_864100.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_864101.1 KEGG: mta:Moth_0915 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein YP_864102.1 PFAM: glycine hydroxymethyltransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rsp:RSP_0823 serine hydroxymethyltransferase protein YP_864103.1 TIGRFAM: sugar-phosphate isomerases, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: ribose/galactose isomerase; KEGG: mag:amb2338 ribose 5-phosphate isomerase RpiB YP_864104.1 PFAM: glycosyl transferase, group 1; KEGG: mac:MA4452 glycosyltransferase (group I) YP_864105.1 TIGRFAM: ribosomal protein S1; PFAM: RNA binding S1 domain protein; KEGG: mag:amb4261 ribosomal protein S1 YP_864106.1 KEGG: eca:ECA2592 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region YP_864107.1 KEGG: gsu:GSU2606 3-phosphoshikimate 1-carboxyvinyltransferase; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YP_864108.1 PFAM: prephenate dehydrogenase; KEGG: gsu:GSU2607 prephenate dehydrogenase YP_864109.1 TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; chorismate mutase; amino acid-binding ACT domain protein; KEGG: pca:Pcar_1887 chorismate mutase/prephenate dehydratase YP_864110.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: sde:Sde_2065 ammonium transporter YP_864111.1 KEGG: ljo:LJ0641 hypothetical protein YP_864112.1 KEGG: rno:304601 bromodomain adjacent to zinc finger domain, 2A (predicted) YP_864120.1 PFAM: lytic transglycosylase, catalytic; KEGG: gsu:GSU1826 lytic murein transglycosylase YP_864121.1 KEGG: dme:CG10910-PB CG10910 gene product from transcript CG10910-RB YP_864122.1 PFAM: lytic transglycosylase, catalytic; KEGG: chy:CHY_0404 transglycosylase YP_864125.1 KEGG: cps:CPS_3260 hypothetical protein YP_864126.1 KEGG: tbd:Tbd_1456 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_864127.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; hemerythrin HHE cation binding domain protein; KEGG: dde:Dde_0703 methyl-accepting chemotaxis sensory transducer YP_864129.1 PFAM: sulfate transporter/antisigma-factor antagonist STAS; KEGG: psb:Psyr_3452 sulfate transporter/antisigma-factor antagonist STAS YP_864131.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: ATPase AAA; KEGG: gme:Gmet_0339 sigma54 specific transcriptional regulator with PAS sensor, fis family YP_864132.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: dsy:DSY2161 hypothetical protein YP_864134.1 PFAM: protein of unknown function DUF29; KEGG: rru:Rru_A3570 protein of unknown function DUF29 YP_864135.1 KEGG: tbd:Tbd_1515 hypothetical protein YP_864136.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: nmu:Nmul_A0104 Sel1-like repeat YP_864137.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: noc:Noc_2705 Sel1-like repeat protein YP_864138.1 SMART: extracellular solute-binding protein, family 3; KEGG: bja:blr4446 ABC transporter amino acid-binding protein YP_864139.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: pae:PA1611 probable sensor/response regulator hybrid YP_864140.1 PFAM: Uncharacterized conserved protein UCP025560; KEGG: son:SO2062 hypothetical protein YP_864141.1 KEGG: cch:Cag_1043 hypothetical protein YP_864142.1 KEGG: rru:Rru_A1629 hypothetical protein YP_864143.1 KEGG: cbu:CBU_0937 hypothetical protein YP_864145.1 PFAM: protein of unknown function DUF336; KEGG: tcx:Tcr_1731 protein of unknown function DUF336 YP_864147.1 KEGG: mac:MA4541 Mrr restriction system protein YP_864148.1 PFAM: regulatory protein, MarR; transcriptional regulator TrmB; transcriptional regulator PadR family protein; KEGG: pha:PSHAa2967 transcriptional regulator YP_864149.1 KEGG: sme:SMb20481 asparagine synthetase (glutamine amidotransferase) protein; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II; asparagine synthase YP_864150.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sme:SMb20482 hypothetical protein YP_864153.1 PFAM: peptidase M20; peptidase M42 family protein; KEGG: eba:ebA5273 conserved hypothetical protein, predicted peptidase M42 family YP_864155.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pfo:Pfl_2616 GCN5-related N-acetyltransferase YP_864156.1 KEGG: reu:Reut_A1920 hypothetical protein YP_864157.1 KEGG: ana:alr7352 hypothetical protein YP_864159.1 PFAM: Na+/Pi-cotransporter; KEGG: tdn:Tmden_1943 Na+/Pi-cotransporter YP_864160.1 PFAM: GAF domain protein; KEGG: dps:DP2625 similar to serine/threonine protein phosphatase YP_864161.1 PFAM: protein of unknown function DUF47; KEGG: cbu:CBU_0015 conserved hypothetical protein TIGR00153 YP_864162.1 PFAM: phosphate transporter; KEGG: dps:DP2628 probable phosphate permease YP_864163.1 KEGG: dps:DP2625 similar to serine/threonine protein phosphatase YP_864164.1 KEGG: dsy:DSY0277 hypothetical protein YP_864165.1 KEGG: dar:Daro_3549 PAS; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; MASE1 domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_864166.1 KEGG: mag:amb1535 response regulator containing a CheY-like receiver domain and a GGDEF domain; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; cyclic nucleotide-binding; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein YP_864167.1 TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: pca:Pcar_0322 mutator MutT protein YP_864168.1 KEGG: dar:Daro_0068 heptaprenyl diphosphate synthase component I YP_864169.1 KEGG: dar:Daro_0069 hypothetical protein YP_864170.1 PFAM: ApbE family lipoprotein; KEGG: pca:Pcar_0035 membrane-associated lipoprotein involved in thiamine biosynthesis YP_864171.1 PFAM: protein of unknown function DUF558; KEGG: son:SO0832 conserved hypothetical protein TIGR00046 YP_864172.1 PFAM: chorismate lyase YP_864173.1 TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; KEGG: vvy:VV0121 4-hydroxybenzoate polyprenyltransferase YP_864174.1 PFAM: response regulator receiver; KEGG: dar:Daro_0110 response regulator receiver YP_864175.1 TIGRFAM: UbiD family decarboxylases; PFAM: carboxylyase-related protein; KEGG: vpa:VP2997 3-polyprenyl-4-hydroxybenzoate decarboxylase YP_864176.1 PFAM: redoxin; KEGG: aba:acid345_3927 thioredoxin-like YP_864177.1 PFAM: CutA1 divalent ion tolerance protein; KEGG: noc:Noc_1056 CutA1 divalent ion tolerance protein YP_864178.1 PFAM: cytochrome C biogenesis protein, transmembrane region; KEGG: rpa:RPA4472 c-type cytochrome biogenesis protein YP_864179.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_864180.1 PFAM: ribosomal protein S9; KEGG: rsp:RSP_0021 30S ribosomal protein S9 YP_864181.1 KEGG: pca:Pcar_1898 N-acetyl-gamma-glutamyl-phosphate reductase; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: semialdehyde dehydrogenase, NAD - binding; semialdehyde dehydrogenase, dimerisation region YP_864182.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: par:Psyc_0327 4Fe-4S ferredoxin YP_864183.1 PFAM: YicC N-terminal domain protein; domain of unknown function DUF1732; KEGG: mca:MCA3026 conserved hypothetical protein TIGR00255 YP_864184.1 KEGG: nar:Saro_1003 guanylate kinase; PFAM: guanylate kinase; SMART: guanylate kinase/L-type calcium channel region YP_864185.1 TIGRFAM: DNA-directed RNA polymerase subunit omega; PFAM: RNA polymerase Rpb6; KEGG: mlo:mlr7753 RNA polymerase omega subunit YP_864186.1 KEGG: mag:amb2253 guanosine polyphosphate pyrophosphohydrolase/synthetase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; RelA/SpoT domain protein YP_864187.1 TIGRFAM: endoribonuclease L-PSP; PFAM: endoribonuclease L-PSP; KEGG: sye:Syncc9902_0877 YjgF-like protein YP_864190.1 PFAM: DNA repair protein RadC; KEGG: det:DET1462 DNA repair protein, RadC family YP_864191.1 KEGG: sat:SYN_00640 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase, N-terminal domain protein; DnaB domain protein helicase, C-terminal domain protein; SMART: ATPase AAA YP_864192.1 KEGG: pca:Pcar_2234 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein YP_864193.1 SMART: extracellular solute-binding protein, family 3; KEGG: bja:blr5802 ABC transporter substrate-binding protein YP_864194.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: sat:SYN_00226 signal transduction histidine kinase YP_864195.1 PFAM: sporulation domain protein YP_864196.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_864197.1 PFAM: colicin V production protein; KEGG: son:SO3065 colicin V production protein YP_864198.1 TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase, class-II; phosphoribosyltransferase; KEGG: pca:Pcar_1326 amidophosphoribosyltransferase YP_864199.1 TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein; KEGG: pca:Pcar_1195 related to flagellar basal-body rod protein (FlgB) YP_864200.1 TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: bba:Bd3406 flagellar basal-body rod protein YP_864201.1 TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: dar:Daro_0776 flagellar hook-basal body complex protein FliE YP_864202.1 TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; flagellar M-ring C-terminal domain protein; KEGG: gme:Gmet_3112 flagellar FliF M-ring protein YP_864203.1 PFAM: flagellar motor switch protein FliG; KEGG: gsu:GSU0411 flagellar motor switch protein FliG YP_864204.1 KEGG: lic:LIC11394 flagellar assembly protein YP_864205.1 KEGG: pca:Pcar_1189 probable flagellum-specific ATP synthase (FliI); TIGRFAM: ATPase, FliI/YscN family; flagellar protein export ATPase FliI; PFAM: H+-transporting two-sector ATPase, alpha/subunit beta, central region; H+-transporting two-sector ATPase, alpha/subunit beta domain protein; SMART: ATPase AAA YP_864206.1 KEGG: hit:NTHI1094 hypothetical protein YP_864207.1 KEGG: pca:Pcar_2753 metal dependent phosphohydrolase YP_864208.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sde:Sde_2152 ATPase FliI/YscN YP_864209.1 KEGG: gsu:GSU2000 tRNA delta(2)-isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase YP_864210.1 TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein, core; KEGG: lpp:lpp0009 host factor-I protein YP_864211.1 PFAM: GTP-binding protein, HSR1-related; KEGG: mag:amb2373 GTPase YP_864212.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: cvi:CV0368 hypothetical protein YP_864214.1 KEGG: fnu:FN2111 hypothetical exported 24-amino acid repeat protein YP_864215.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: cch:Cag_0147 rubredoxin YP_864219.1 TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: sde:Sde_0900 arsenate reductase YP_864220.1 KEGG: pfo:Pfl_2552 hypothetical protein YP_864221.1 PFAM: hypothetical protein; protein of unknown function DUF323; KEGG: dps:DP2422 hypothetical protein YP_864222.1 KEGG: cvi:CV3267 hypothetical protein YP_864223.1 KEGG: cvi:CV3268 hypothetical protein YP_864224.1 PFAM: FAD dependent oxidoreductase; tryptophan halogenase; KEGG: cvi:CV3269 hypothetical protein YP_864226.1 PFAM: hypothetical protein; Tetratricopeptide TPR_4; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: bur:Bcep18194_A3340 hypothetical protein YP_864228.1 TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: mag:amb0203 chaperonin GroEL YP_864229.1 PFAM: chaperonin Cpn10; KEGG: atc:AGR_C_1221 10 KD chaperonin (protein CPN10) (protein GROES) YP_864230.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: tcx:Tcr_1381 sulfide-quinone reductase YP_864231.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: sat:SYN_00226 signal transduction histidine kinase YP_864233.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: ATPase AAA; KEGG: sat:SYN_01466 sigma-54 dependent transcriptional regulator YP_864234.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein YP_864235.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: ATPase AAA; KEGG: bba:Bd3432 response regulator of hydrogenase 3 activity (sensor HydH) YP_864236.1 involved in methylation of ribosomal protein L3 YP_864237.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dar:Daro_3868 GGDEF YP_864238.1 PFAM: Squalene/phytoene synthase; KEGG: aba:acid345_1745 squalene/phytoene synthase YP_864239.1 PFAM: Squalene/phytoene synthase; KEGG: dar:Daro_2706 squalene/phytoene synthase YP_864240.1 PFAM: amine oxidase; KEGG: bxe:Bxe_B0011 hypothetical protein YP_864241.1 KEGG: rru:Rru_A0941 competence lipoprotein ComL YP_864242.1 TIGRFAM: efflux transporter RND family, MFP subunit; KEGG: noc:Noc_1992 secretion protein HlyD YP_864243.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; hemerythrin HHE cation binding domain protein; KEGG: dps:DP2258 similar to methyl-accepting chemotaxis protein YP_864244.1 PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: pfl:PFL_4014 sensor histidine kinase YP_864245.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO4487 DNA-binding response regulator YP_864246.1 KEGG: mag:amb0190 predicted membrane protein YP_864247.1 KEGG: son:SO4485 diheme cytochrome C YP_864248.1 KEGG: rsp:RSP_2021 mono-heme class I cytochrome C YP_864249.1 PFAM: cytochrome B561; KEGG: son:SO4483 cytochrome b YP_864250.1 KEGG: hch:HCH_03218 superfamily I DNA and RNA helicase and helicase subunit YP_864251.1 KEGG: mta:Moth_2336 transposase IS66 YP_864253.1 PFAM: IS66 Orf2 family protein; KEGG: rme:Rmet_1275 IS66 Orf2 like YP_864254.1 PFAM: transposase IS66; KEGG: ppu:PP3985 ISPpu13, transposase Orf2 YP_864255.1 PFAM: transposase IS66; KEGG: ppu:PP3985 ISPpu13, transposase Orf2 YP_864256.1 PFAM: IS66 Orf2 family protein; KEGG: rme:Rmet_1275 IS66 Orf2 like YP_864259.1 PFAM: 3'-5' exonuclease; KEGG: rbe:RBE_0748 ribonuclease D YP_864260.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rsp:RSP_1075 short chain dehydrogenase YP_864261.1 TIGRFAM: dihydroneopterin aldolase; KEGG: mca:MCA2988 dihydroneopterin aldolase YP_864262.1 TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG: cyb:CYB_2920 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase YP_864263.1 TIGRFAM: PAS sensor protein; PFAM: extracellular solute-binding protein, family 3; response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: mag:amb1110 signal transduction histidine kinase YP_864264.1 PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: gox:GOX0044 phosphomannomutase YP_864265.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: rru:Rru_A2116 UDP-glucose 6-dehydrogenase YP_864266.1 PFAM: methyltransferase type 11; KEGG: mca:MCA1151 hypothetical protein YP_864267.1 TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: nucleotidyl transferase; KEGG: dps:DPPB68 probable UTP-glucose-1-phosphate uridylyltransferase YP_864268.1 KEGG: rba:RB11276 hypothetical protein-transmembrane region and signal peptide prediction YP_864269.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_864270.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_864272.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: vpa:VP2099 LuxO repressor protein YP_864273.1 PFAM: sulfatase; protein of unknown function DUF1705; KEGG: pcr:Pcryo_1245 sulfatase YP_864275.1 KEGG: dvu:DVU1136 host-nuclease inhibitor protein Gam YP_864276.1 SMART: helix-turn-helix domain protein YP_864278.1 catalyzes the formation of L-tryptophan from indole and L-serine YP_864279.1 PFAM: dienelactone hydrolase; KEGG: pae:PA1166 hypothetical protein YP_864280.1 PFAM: lytic transglycosylase, catalytic; KEGG: reu:Reut_A2357 lytic transglycosylase, catalytic YP_864281.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: par:Psyc_0693 peptidyl-prolyl cis-trans isomerase, cyclophilin type YP_864282.1 PFAM: Ppx/GppA phosphatase; KEGG: bfs:BF2669 phosphatase YP_864283.1 PFAM: 17 kDa surface antigen; KEGG: dps:DP0122 similar to 17 kDa surface antigen YP_864284.1 PFAM: RelA/SpoT domain protein; KEGG: sth:STH1636 GTP pyrophosphokinase YP_864286.1 TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: mfa:Mfla_0245 glutaredoxin-related protein YP_864287.1 PFAM: BolA family protein; KEGG: nmu:Nmul_A2742 BolA-like protein YP_864288.1 PFAM: cytochrome C1; KEGG: mag:amb4089 cytochrome b/c1 YP_864289.1 PFAM: cytochrome b/b6, N-terminal domain; cytochrome b/b6, C-terminal domain; KEGG: mag:amb4089 cytochrome b/c1 YP_864290.1 TIGRFAM: ubiquinol-cytochrome C reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: rru:Rru_A0364 ubiquinol-cytochrome C reductase, iron-sulfur subunit YP_864291.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: mta:Moth_1880 RNA methyltransferase TrmH, group 2 YP_864292.1 TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: atc:AGR_L_2256 phosphoglucomutase YP_864294.1 PFAM: hypothetical protein; Tetratricopeptide TPR_4; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: mba:Mbar_A2526 hypothetical protein YP_864295.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_864296.1 TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: rru:Rru_A3488 initiation factor 3 YP_864297.1 PFAM: ribosomal protein L35; KEGG: dps:DP1426 probable 50S ribosomal protein L35 YP_864298.1 TIGRFAM: ribosomal protein L20; KEGG: mlo:mll5057 50S ribosomal protein L20 YP_864299.1 KEGG: psp:PSPPH_2139 phenylalanyl-tRNA synthetase, alpha subunit; TIGRFAM: phenylalanyl-tRNA synthetase, subunit alpha; PFAM: phenylalanyl-tRNA synthetase, class IIc; aminoacyl tRNA synthetase, class II domain protein YP_864300.1 TIGRFAM: phenylalanyl-tRNA synthetase subunit beta; KEGG: pca:Pcar_1423 phenylalanyl-tRNA synthetase subunit beta YP_864301.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP YP_864302.1 PFAM: peptidoglycan-binding LysM; peptidase M23B; KEGG: rru:Rru_A1767 peptidase M23B YP_864303.1 KEGG: pca:Pcar_1428 hypothetical protein YP_864304.1 KEGG: gme:Gmet_1420 protein-L-isoaspartate(D-aspartate) O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; methyltransferase type 11 YP_864305.1 KEGG: noc:Noc_0789 acid phosphatase; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE YP_864306.1 KEGG: hch:HCH_04666 hypothetical protein YP_864307.1 KEGG: noc:Noc_2141 ABC transporter inner membrane protein YP_864308.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: noc:Noc_2142 ABC transporter ATPase YP_864309.1 KEGG: ade:Adeh_1674 protein of unknown function DUF59 YP_864312.1 PFAM: GTPase EngC; KEGG: vvy:VVA0067 predicted GTPase YP_864315.1 catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent YP_864316.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: jan:Jann_3164 glyoxalase/bleomycin resistance protein/dioxygenase YP_864317.1 PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; carbamoyl-phosphate synthase L chain, ATP-binding; carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: sil:SPO1101 propionyl-CoA carboxylase, subunit alpha YP_864318.1 PFAM: carboxyl transferase; KEGG: rfr:Rfer_2803 propionyl-CoA carboxylase YP_864319.1 TIGRFAM: LAO/AO transporter ATPase; PFAM: ArgK protein; KEGG: eba:ebA3741 arginine/ornithine transporter ATPase YP_864320.1 MDM; functions in conversion of succinate to propionate YP_864321.1 KEGG: bca:BCE0977 hypothetical protein YP_864322.1 PFAM: membrane bound O-acyl transferase, MBOAT family protein; KEGG: mca:MCA3074 alginate O-acetyltransferase YP_864323.1 PFAM: glycosyl transferase, group 1; KEGG: dde:Dde_3316 glycosyltransferase-like YP_864324.1 KEGG: pca:Pcar_0283 hypothetical protein YP_864325.1 PFAM: transglutaminase; transglutaminase, N-terminal domain protein; KEGG: sde:Sde_3099 transglutaminase-like superfamily domain protein YP_864326.1 PFAM: protein of unknown function DUF403; protein of unknown function DUF404; protein of unknown function DUF407; KEGG: sde:Sde_3098 protein of unknown function DUF403 YP_864327.1 PFAM: transglutaminase; transglutaminase, N-terminal domain protein; KEGG: mag:amb0821 transglutaminase-like enzyme YP_864328.1 KEGG: pca:Pcar_0073 hypothetical protein YP_864329.1 PFAM: methyltransferase type 11; KEGG: nar:Saro_0725 chromosome segregation ATPases-like YP_864330.1 PFAM: protein of unknown function DUF403; KEGG: sde:Sde_3100 hypothetical protein YP_864331.1 PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: hch:HCH_00983 hypothetical protein YP_864332.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: response regulator receiver; KEGG: mag:amb1682 hypothetical protein YP_864333.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: mag:amb3447 signal transduction histidine kinase YP_864334.1 KEGG: dde:Dde_3113 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein YP_864335.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: tdn:Tmden_0909 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) YP_864336.1 TIGRFAM: thymidylate synthase, flavin-dependent; PFAM: thymidylate synthase complementing protein ThyX; KEGG: nse:NSE_0163 thymidylate synthase, flavin-dependent YP_864337.1 KEGG: eba:c1A43 tRNA (guanine-N(7)-)-methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: methyltransferase YP_864339.1 PFAM: aldo/keto reductase; KEGG: gvi:gll3752 probable oxidoreductase YP_864340.1 KEGG: noc:Noc_2021 PAS sensor diguanylate cyclase/phophodiesterase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_864341.1 KEGG: reu:Reut_B4998 hypothetical protein YP_864342.1 KEGG: gme:Gmet_0069 diguanylate cyclase (GGDEF domain); TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; HDOD; SMART: GAF domain protein YP_864343.1 KEGG: psb:Psyr_3452 sulfate transporter/antisigma-factor antagonist STAS YP_864345.1 PFAM: glycosyl transferase, group 1; KEGG: bha:BH2688 alpha-D-mannose-alpha(1-6)phosphatidyl myo-inositol monomannoside transferase YP_864346.1 KEGG: mag:amb0663 thioredoxin reductase; TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_864347.1 KEGG: mca:MCA0509 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: cysteinyl-tRNA synthetase, class Ia YP_864348.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; KEGG: sdy:SDY_4409 hypothetical protein YP_864349.1 PFAM: peptidase M50; KEGG: mag:amb3272 hypothetical protein YP_864350.1 KEGG: mag:amb3273 membrane-fusion protein YP_864351.1 KEGG: mag:amb3274 membrane-fusion protein YP_864352.1 PFAM: outer membrane efflux protein; KEGG: mag:amb3276 outer membrane protein YP_864353.1 PFAM: cadherin; SMART: Dystroglycan-type cadherin domain protein; KEGG: mag:amb3277 RTX toxins and related Ca2+-binding protein YP_864354.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: mag:amb1138 AraC-type DNA-binding domain-containing protein YP_864355.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: mag:amb1137 AraC-type DNA-binding domain-containing protein YP_864356.1 PFAM: penicillin-binding protein, transpeptidase; KEGG: son:SO0837 beta-lactamase YP_864357.1 KEGG: dar:Daro_4142 PAS; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein YP_864358.1 KEGG: mag:amb2214 hypothetical protein YP_864359.1 TIGRFAM: para-aminobenzoate synthase component I; PFAM: anthranilate synthase component I and chorismate binding protein; KEGG: sru:SRU_1685 chorismate binding enzyme YP_864360.1 PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: chy:CHY_0065 succinate/fumarate oxidoreductase YP_864361.1 KEGG: gme:Gmet_0309 succinate dehydrogenase/fumarate reductase iron-sulfur protein; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin YP_864362.1 KEGG: cte:CT2042 succinate/fumarate oxidoreductase, flavoprotein subunit; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_864363.1 TIGRFAM: leucyl-tRNA synthetase; KEGG: pca:Pcar_1413 leucyl-tRNA synthetase YP_864365.1 PFAM: Hpt domain protein YP_864366.1 PFAM: response regulator receiver; stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: hch:HCH_05185 response regulator containing a CheY-like receiver domain and a GGDEF domain YP_864367.1 TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: gsu:GSU0483 ExsB protein YP_864368.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: pca:Pcar_0996 cell cycle protein MesJ YP_864369.1 KEGG: gsu:GSU1809 cell division protein FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; ATPase AAA, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: ATPase AAA YP_864370.1 KEGG: xac:XAC1733 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS YP_864371.1 PFAM: sulfate transporter/antisigma-factor antagonist STAS; KEGG: ppu:PP4364 anti-sigma F factor antagonist YP_864372.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: dps:DP2258 similar to methyl-accepting chemotaxis protein YP_864373.1 PFAM: transposase IS66; KEGG: hal:VNG0056H hypothetical protein encoded by ISH10 YP_864375.1 PFAM: DSBA oxidoreductase; KEGG: ade:Adeh_3950 DsbA oxidoreductase YP_864376.1 PFAM: cyclase/dehydrase; KEGG: rru:Rru_A1876 cyclase/dehydrase YP_864377.1 KEGG: dps:DP0822 probable glyceraldehyde 3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_864378.1 PFAM: citrate transporter; KEGG: sde:Sde_0065 Na+/H+ antiporter (NhaD family) YP_864379.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rru:Rru_A1795 HAD-superfamily hydrolase, subfamily IIA YP_864380.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: tcx:Tcr_1555 LysR family transcriptional regulator YP_864381.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: cpe:CPE0030 probable hemolysin-related protein YP_864382.1 PFAM: protein of unknown function DUF218; KEGG: nmu:Nmul_A0343 protein of unknown function DUF218 YP_864383.1 PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: mca:MCA0861 integrase/recombinase XerC YP_864384.1 KEGG: sde:Sde_0236 hypothetical protein YP_864385.1 PFAM: regulatory protein, ArsR; KEGG: cvi:CV3351 probable ArsR family transcriptional regulator YP_864386.1 PFAM: rhodanese; KEGG: mca:MCA2536 rhodanese domain protein YP_864387.1 TIGRFAM: thioredoxin; PFAM: thioredoxin domain; KEGG: mca:MCA2134 thioredoxin YP_864388.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: gka:GK2073 SAM-dependent methyltransferase YP_864389.1 PFAM: adenylate cyclase; KEGG: dsy:DSY1427 hypothetical protein YP_864390.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_864391.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: tbd:Tbd_0079 Crp/Fnr family transcriptional regulator YP_864392.1 KEGG: mba:Mbar_A2306 leucine-rich-repeat protein; TIGRFAM: small GTP-binding protein; PFAM: leucine-rich repeat protein; Miro domain protein; Ras family protein; SMART: Ras small GTPase, Rab type; leucine-rich repeat-containing protein, typical subtype YP_864393.1 PFAM: transferase; protein of unknown function DUF1058; SH3, type 3 domain protein; SMART: SH3 domain protein domain protein; KEGG: tcr:509269.4 Tb-291 membrane-associated protein-like Pfam: Plasmodium_HRP Vicilin_N PROSITE: ALA_RICH ARG_RICH GLU_RICH YP_864394.1 KEGG: son:SO0577 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_864395.1 PFAM: HPP family protein+B94; KEGG: dvu:DVU3251 membrane protein, HPP family YP_864396.1 PFAM: hypothetical protein; KEGG: nha:Nham_3508 hypothetical protein YP_864397.1 PFAM: OmpA/MotB domain protein; KEGG: rru:Rru_A1095 OmpA/MotB YP_864398.1 PFAM: TolB, N-terminal domain protein; WD40 domain protein beta Propeller; KEGG: sme:SMc04461 probable TOLB protein precursor YP_864399.1 TIGRFAM: TonB family protein YP_864400.1 TIGRFAM: TonB family protein; KEGG: nmu:Nmul_A2715 TonB-like YP_864401.1 PFAM: biopolymertransporter ExbD/TolR; KEGG: gox:GOX1685 ExbD/TolR family protein YP_864402.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: mca:MCA1226 TolQ protein YP_864403.1 PFAM: thioesterase superfamily protein; KEGG: mca:MCA1224 thioesterase family protein YP_864404.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_864405.1 PFAM: transposase IS66; KEGG: ppu:PP3985 ISPpu13, transposase Orf2 YP_864406.1 PFAM: IS66 Orf2 family protein; KEGG: rme:Rmet_1275 IS66 Orf2 like YP_864408.1 KEGG: sth:STH1160 Holliday junction DNA helicase RuvA; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: RuvA domain protein; DNA recombination protein RuvA, domain I; SMART: Helix-hairpin-helix DNA-binding, class 1 YP_864409.1 TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; KEGG: gsu:GSU1075 crossover junction endodeoxyribonuclease RuvC YP_864410.1 PFAM: protein of unknown function DUF28; KEGG: gme:Gmet_0743 hypothetical protein YP_864412.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: gsu:GSU1624 glycolate oxidase iron-sulfur subunit YP_864413.1 PFAM: import inner membrane translocase, subunit Tim44; KEGG: gme:Gmet_1927 import inner membrane translocase, subunit Tim44 YP_864415.1 PFAM: MltA domain protein; 3D domain protein; KEGG: sat:SYN_02860 membrane-bound lytic murein transglycosylase YP_864416.1 KEGG: psb:Psyr_3804 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase; SMART: DEAD-like helicases-like YP_864417.1 PFAM: extracellular ligand-binding receptor; KEGG: pae:PA4913 branched-chain amino acid transporter substrate-binding protein YP_864418.1 PFAM: inner-membrane translocator; KEGG: pfo:Pfl_0553 inner-membrane translocator YP_864419.1 PFAM: inner-membrane translocator; KEGG: psb:Psyr_0599 inner-membrane translocator YP_864420.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pae:PA4910 branched-chain amino acid transporter ATP-binding protein YP_864421.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pfo:Pfl_0556 ABC transporter-like YP_864422.1 PFAM: phosphatidylglycerophosphatase A; KEGG: mag:amb2547 phosphatidylglycerophosphatase A and related protein YP_864423.1 PFAM: damage inducible protein CinA; KEGG: mbo:Mb1936 probable cinA-like protein CinA YP_864424.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: ade:Adeh_2911 ErfK/YbiS/YcfS/YnhG YP_864425.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: mba:Mbar_A3708 hypothetical protein YP_864426.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: rba:RB8612 probable 3-demethylubiquinone-9 3-methyltransferase YP_864427.1 PFAM: metallophosphoesterase; KEGG: mta:Moth_1083 hypothetical protein YP_864428.1 KEGG: mag:amb1539 phosphoribosylaminoimidazolesuccinocarboxamide synthase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase YP_864429.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_864431.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: rfr:Rfer_1726 maf protein YP_864432.1 PFAM: rhodanese; KEGG: noc:Noc_0191 thiosulfate sulfurtransferase YP_864434.1 KEGG: vpa:VP2534 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54, G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54, helical bundle; SMART: ATPase AAA YP_864435.1 PFAM: ribosomal protein S16; KEGG: aci:ACIAD3313 30S ribosomal protein S16 YP_864436.1 TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: cvi:CV3674 16S rRNA processing protein YP_864437.1 KEGG: mta:Moth_0970 tRNA (guanine-N1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase YP_864438.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_864439.1 PFAM: ribonuclease HII/HIII; KEGG: sil:SPO3452 ribonuclease HII YP_864440.1 PFAM: GrpE protein; KEGG: sme:SMc01142 probable heat shock protein YP_864441.1 TIGRFAM: chaperone protein DnaK; PFAM: heat shock protein 70; KEGG: mag:amb4440 molecular chaperone YP_864442.1 TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ central domain protein; heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: psb:Psyr_4194 DnaJ central region:heat shock protein DnaJ, N-terminal:chaperone DnaJ, C-terminal YP_864443.1 PFAM: dihydrodipicolinate reductase; KEGG: tbd:Tbd_1125 dihydrodipicolinate reductase YP_864445.1 KEGG: mca:MCA1094 orotidine 5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase YP_864446.1 catalyzes the S-adenosylmethionine-dependent transmethylation of thiopurine compounds; may be involved in selenium cycling by forming dimethylselenide and/or dimethyldiselenide YP_864447.1 KEGG: dps:DP0123 hypothetical protein YP_864448.1 KEGG: mag:amb3721 hypothetical protein YP_864449.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: cpe:CPE0030 probable hemolysin-related protein YP_864450.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: pca:Pcar_2212 probable hemolysin-related protein YP_864451.1 PFAM: CHAD domain containing protein; KEGG: mag:amb1972 hypothetical protein YP_864452.1 KEGG: tcx:Tcr_1289 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase YP_864453.1 PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, subunit alpha; KEGG: rru:Rru_A3078 electron transfer flavoprotein YP_864454.1 PFAM: electron transfer flavoprotein beta-subunit; KEGG: atc:AGR_L_2463 electron transfer flavoprotein beta-subunit (beta-ETF) (electron transfer flavoprotein small subunit) (ETFSS) YP_864455.1 PFAM: DSBA oxidoreductase; KEGG: eba:ebA3617 thiol:disulfide interchange protein DsbA precursor YP_864456.1 PFAM: OsmC family protein; KEGG: mca:MCA1750 OsmC/Ohr family protein YP_864457.1 PFAM: phosphoesterase, RecJ domain protein; KEGG: gvi:glr0820 hypothetical protein YP_864458.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_864459.1 TIGRFAM: lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; KEGG: gvi:gll4414 lipoate-protein ligase B YP_864460.1 PFAM: NUDIX hydrolase; KEGG: mca:MCA0519 MutT/nudix family protein YP_864461.1 TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: mca:MCA2343 protease DO YP_864462.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: ppr:PBPRA1402 hypothetical extracellular solute-binding protein,family 7 YP_864464.1 KEGG: cel:ZK84.1 Hypothetical protein ZK84.1 YP_864465.1 KEGG: tbd:Tbd_1252 peptidase S16, ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; ATPase AAA, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: ATPase AAA YP_864466.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: tcx:Tcr_0349 HesB/YadR/YfhF YP_864467.1 KEGG: rme:Rmet_3150 zinc protease protein YP_864468.1 KEGG: neu:NE0634 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YP_864469.1 KEGG: cps:CPS_1654 hypothetical protein YP_864470.1 KEGG: cps:CPS_1653 hypothetical protein YP_864471.1 KEGG: cps:CPS_1652 conserved hypothetical protein YP_864472.1 PFAM: regulatory protein, TetR; KEGG: tbd:Tbd_0482 TetR family transcriptional regulator YP_864473.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: cvi:CV3248 hypothetical protein YP_864474.1 PFAM: chemotaxis sensory transducer; KEGG: mag:amb1538 methyl-accepting chemotaxis protein YP_864476.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cps:CPS_2473 DNA-binding response regulator YP_864477.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: sdn:Sden_0381 type I secretion outer membrane protein, TolC YP_864478.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD; KEGG: eca:ECA3269 HlyD family secretion protein YP_864479.1 PFAM: ABC transporter; peptidase C39, bacteriocin processing; SMART: ATPase AAA; KEGG: reu:Reut_C5973 ABC transporter transmembrane region:ABC transporter YP_864480.1 PFAM: Heme NO binding domain protein; KEGG: ccr:CC2992 hypothetical protein YP_864481.1 KEGG: ade:Adeh_1764 hypothetical protein YP_864482.1 KEGG: rfr:Rfer_4073 cytochrome C family protein YP_864483.1 KEGG: mca:MCA2523 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE, N-terminal domain protein; Ketopantoate reductase ApbA/PanE, C-terminal domain protein YP_864484.1 KEGG: tbd:Tbd_1840 hypothetical protein YP_864485.1 PFAM: Appr-1-p processing domain protein; KEGG: csa:Csal_0319 Appr-1-p processing YP_864486.1 PFAM: lytic transglycosylase, catalytic; KEGG: pca:Pcar_2486 soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)-like YP_864487.1 PFAM: alcohol dehydrogenase, zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: vpa:VP0028 zinc-binding alcohol dehydrogenase YP_864488.1 PFAM: cytochrome C, class I YP_864489.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: mca:MCA1725 serine protease YP_864490.1 PFAM: acylneuraminate cytidylyltransferase; KEGG: sru:SRU_0608 CMP-N-acetlyneuraminic acid synthetase YP_864491.1 PFAM: CBS domain containing protein; nucleotidyl transferase; KEGG: sru:SRU_0607 mannose-1-phosphate guanyltransferase YP_864492.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: ilo:IL0550 UDP-N-acetylglucosamine 2-epimerase YP_864493.1 PFAM: N-acetylneuraminic acid synthase, N-terminal domain; SAF domain; KEGG: syw:SYNW0448 N-acetylneuraminic acid synthetase YP_864494.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: mag:amb0078 predicted pyridoxal phosphate-dependent enzyme YP_864495.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: bxe:Bxe_A0190 hypothetical protein YP_864496.1 PFAM: heat shock protein DnaJ domain protein; KEGG: pae:PA1191 hypothetical protein YP_864497.1 KEGG: eli:ELI_14740 hypothetical protein YP_864498.1 KEGG: psp:PSPPH_4785 probable ATP-binding protein YP_864499.1 PFAM: Serum amyloid A protein; KEGG: sdn:Sden_2438 serum amyloid A protein YP_864500.1 KEGG: rru:Rru_A3121 asparagine synthase, glutamine-hydrolyzing; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II; asparagine synthase YP_864502.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: mca:MCA0625 carbohydrate ABC transporter ATP-binding protein YP_864503.1 PFAM: ABC transporter; KEGG: dde:Dde_0841 polysaccharide ABC transporter permease YP_864504.1 PFAM: Auxin Efflux Carrier; KEGG: ilo:IL2112 malate permease YP_864505.1 KEGG: cps:CPS_5006 hypothetical protein YP_864506.1 PFAM: protein of unknown function DUF343; methyltransferase type 11; methyltransferase type 12; KEGG: mbu:Mbur_1864 hypothetical protein YP_864507.1 PFAM: glycosyl transferase, group 1; KEGG: rru:Rru_A3096 glycosyl transferase, group 1 YP_864508.1 PFAM: glycosyl transferase, group 1; KEGG: neu:NE0794 glycosyl transferase group 1 YP_864509.1 PFAM: O-antigen polymerase; KEGG: tbd:Tbd_0297 hypothetical protein YP_864510.1 PFAM: sugar transferase; KEGG: tbd:Tbd_0199 glycosyltransferase YP_864511.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: gvi:gll4302 unknown protein YP_864512.1 PFAM: lipopolysaccharide biosynthesis; KEGG: neu:NE1804 chain length determinant protein YP_864513.1 KEGG: eba:ebA4250 probable exopolysaccharide biosynthesis protein YP_864514.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: dar:Daro_2402 UDP-N-acetylglucosamine 2-epimerase YP_864515.1 PFAM: polysaccharide deacetylase; KEGG: tbd:Tbd_0287 polysaccharide deacetylase YP_864516.1 KEGG: nmu:Nmul_A2523 hypothetical protein YP_864517.1 PFAM: glycosyl transferase, group 1; KEGG: tbd:Tbd_0289 glycosyl transferase group 1 YP_864518.1 PFAM: glycosyl transferase, group 1; KEGG: dar:Daro_2407 glycosyl transferase, group 1 YP_864521.1 KEGG: tbd:Tbd_2497 HPr kinase YP_864522.1 KEGG: tbd:Tbd_2498 hypothetical protein YP_864523.1 TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II; asparagine synthase; KEGG: noc:Noc_1975 asparagine synthase, glutamine-hydrolyzing YP_864524.1 KEGG: hch:HCH_00324 hypothetical protein YP_864525.1 TIGRFAM: acetate--CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: pae:PA4733 acetyl-coenzyme A synthetase YP_864527.1 TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: ComEC/Rec2-related protein; KEGG: noc:Noc_2672 DNA internalization-related competence protein ComEC/Rec2 YP_864528.1 PFAM: Queuosine biosynthesis protein; KEGG: sil:SPO2226 S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_864529.1 TIGRFAM: methyltransferase FkbM family; KEGG: cme:CMI076C hypothetical protein Pfam: glyco_transf_11 YP_864532.1 KEGG: gme:Gmet_0852 queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylases, various specificities; queuine tRNA-ribosyltransferase; PFAM: queuine/other tRNA-ribosyltransferase YP_864533.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: chemotaxis sensory transducer; hemerythrin HHE cation binding domain protein; KEGG: dps:DP0468 similar to methyl-accepting chemotaxis protein YP_864534.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: csa:Csal_2080 molybdopterin-guanine dinucleotide biosynthesis protein B YP_864535.1 KEGG: cbu:CBU_0937 hypothetical protein YP_864538.1 PFAM: carbamoyltransferase; KEGG: reu:Reut_B4385 carbamoyltransferase YP_864539.1 PFAM: nucleotidyl transferase; KEGG: mag:amb0798 nucleoside-diphosphate-sugar pyrophosphorylase YP_864540.1 PFAM: glycosyl transferase, family 2; KEGG: bsu:BG13230 similar to dolichol phosphate mannose synthase YP_864541.1 PFAM: transketolase, central region; transketolase domain protein; KEGG: mag:amb0067 transketolase C-terminal section YP_864542.1 PFAM: transketolase; KEGG: mag:amb0066 transketolase N-terminal section YP_864543.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mag:amb0793 predicted pyridoxal phosphate-dependent enzyme YP_864544.1 PFAM: GHMP kinase; GHMP kinase, C terminal domain protein; KEGG: mag:amb1073 predicted kinase YP_864545.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: mag:amb0797 nucleoside-diphosphate-sugar epimerase YP_864546.1 KEGG: pfo:Pfl_0328 hypothetical protein YP_864548.1 PFAM: glycosyl transferase, family 2; KEGG: pca:Pcar_1927 glycosyl transferase, group 2 family protein YP_864549.1 KEGG: rpd:RPD_4261 hypothetical protein YP_864550.1 KEGG: plu:plu4104 cell division protein; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; GTP-binding signal recognition particle SRP54, helical bundle; SMART: ATPase AAA YP_864551.1 PFAM: lytic transglycosylase, catalytic; KEGG: mag:amb2539 soluble lytic murein transglycosylase and related regulatory protein YP_864552.1 PFAM: MCP methyltransferase, CheR-type; KEGG: gme:Gmet_2420 MCP methyltransferase, CheR-type YP_864553.1 PFAM: CheB methylesterase; response regulator receiver; KEGG: ade:Adeh_1383 response regulator receiver (CheY-like) modulated CheB methylesterase YP_864554.1 KEGG: dvu:DVU1410 hypothetical protein YP_864555.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: pca:Pcar_1355 methyl-accepting chemotaxis sensory transducer YP_864556.1 PFAM: response regulator receiver; CheW domain protein; KEGG: cps:CPS_1474 chemotaxis protein CheV YP_864557.1 PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: gsu:GSU1290 chemotaxis protein CheA YP_864558.1 PFAM: response regulator receiver; KEGG: gsu:GSU1289 chemotaxis protein CheY YP_864559.1 PFAM: sulfate transporter/antisigma-factor antagonist STAS; KEGG: gme:Gmet_2429 anti-sigma-factor antagonist (STAS) domain protein YP_864560.1 PFAM: thiamine monophosphate synthase; KEGG: tbd:Tbd_0027 NUDIX hydrolase YP_864561.1 PFAM: radical SAM protein; KEGG: wsu:WS1656 conserved hypothetical protein-organic radical activating enzyme YP_864562.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: tte:TTE2368 6-pyruvoyltetrahydropterin synthase YP_864563.1 SMART: helicase c2; DEAD-like helicases-like; KEGG: dar:Daro_1779 helicase c2:DEAD/DEAH box helicase, N-terminal YP_864564.1 PFAM: peptidase M22, glycoprotease; KEGG: sme:SMc01118 hypothetical protein YP_864565.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; FR47 domain protein; KEGG: xac:XAC3563 ribosomal-protein-alanine acetyltransferase YP_864566.1 KEGG: tbd:Tbd_0067 hypothetical protein YP_864567.1 PFAM: CBS domain containing protein; KEGG: mth:MTH644 hypothetical protein YP_864568.1 SMART: guanylate kinase/L-type calcium channel region; KEGG: pac:PPA1190 guanylate kinase YP_864569.1 PFAM: adenylate cyclase; KEGG: syn:slr0698 hypothetical protein YP_864570.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP YP_864573.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: dvu:DVU0176 glycerophosphoryl diester phosphodiesterase family protein YP_864574.1 KEGG: cyb:CYB_1640 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_864575.1 PFAM: protein of unknown function DUF790; KEGG: gvi:glr1365 hypothetical protein YP_864576.1 PFAM: helicase; type III restriction enzyme, res subunit; DEAD/DEAH box helicase; SMART: DEAD-like helicases-like; KEGG: ava:Ava_0951 type III restriction enzyme, res subunit YP_864577.1 KEGG: tbd:Tbd_2491 hypothetical protein YP_864578.1 PFAM: transposase IS3/IS911 family protein; KEGG: par:Psyc_1688 transposase OrfA, IS3/IS911family YP_864579.1 PFAM: Integrase, catalytic region; KEGG: lpf:lpl1576 hypothetical protein YP_864580.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron, maturase-specific domain protein; KEGG: plu:plu1111 hypothetical protein YP_864581.1 KEGG: rso:RSp0548 ISRSO8-transposase orfB protein YP_864582.1 PFAM: IS66 Orf2 family protein; KEGG: rme:Rmet_1275 IS66 Orf2 like YP_864583.1 PFAM: transposase IS66; KEGG: ppu:PP3985 ISPpu13, transposase Orf2 YP_864584.1 KEGG: reu:Reut_C6183 transposase IS66 YP_864585.1 PFAM: patatin; KEGG: rfr:Rfer_1852 patatin YP_864586.1 KEGG: sat:SYN_01833 HesA/MoeB/ThiF type protein YP_864588.1 PFAM: IS66 Orf2 family protein; KEGG: rme:Rmet_1275 IS66 Orf2 like YP_864589.1 PFAM: transposase IS66; KEGG: ppu:PP3985 ISPpu13, transposase Orf2 YP_864590.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: sat:SYN_01833 HesA/MoeB/ThiF type protein YP_864591.1 KEGG: sat:SYN_01832 hypothetical cytosolic protein YP_864592.1 PFAM: phosphoribosyltransferase; KEGG: plt:Plut_1525 hypoxanthine phosphoribosyl transferase YP_864593.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; carbamoyl-phosphate synthase L chain, ATP-binding; carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: mlo:mll0203 biotin carboxylase YP_864594.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: gme:Gmet_0983 acetyl-CoA biotin carboxyl carrier YP_864595.1 KEGG: sgl:SG0154 3-dehydroquinate dehydratase II; TIGRFAM: 3-dehydroquinate dehydratase, type II; PFAM: dehydroquinase, class II YP_864596.1 KEGG: cal:orf19.4334 hypothetical protein YP_864597.1 fusion of thiS and thiG; functions in thiamine (vitamin B1) biosynthesis YP_864599.1 PFAM: Auxin Efflux Carrier; KEGG: csa:Csal_3143 auxin efflux carrier YP_864600.1 KEGG: rru:Rru_A2730 hypothetical protein YP_864601.1 KEGG: mta:Moth_2006 xanthine dehydrogenase accessory factor YP_864602.1 PFAM: KAP P-loop domain protein; KEGG: dra:DRC0009 hypothetical protein YP_864603.1 KEGG: ana:all3465 unknown protein YP_864604.1 PFAM: transposase IS66; KEGG: ppu:PP3985 ISPpu13, transposase Orf2 YP_864605.1 PFAM: IS66 Orf2 family protein; KEGG: rme:Rmet_1275 IS66 Orf2 like YP_864608.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB/Yqey domain protein; GatB N-terminal region; GatB, central domain protein; KEGG: mca:MCA0097 glutamyl-tRNA(Gln) amidotransferase, B subunit YP_864609.1 KEGG: cbu:CBU_1474 glutamyl-tRNA(Gln) amidotransferase, A subunit; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, subunit alpha; PFAM: amidase YP_864610.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase subunit C; KEGG: lin:lin1868 glutamyl-tRNA(Gln) amidotransferase (subunit C) YP_864612.1 TIGRFAM: electron transport complex, RnfABCDGE type, E subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: pca:Pcar_0260 NADH-ubiquinone oxidoreductase YP_864613.1 TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; KEGG: mca:MCA2820 electron transport complex, G subunit YP_864614.1 TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; KEGG: mca:MCA2821 electron transport complex, D subunit YP_864615.1 TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: eba:ebA2579 electron transport complex protein RnfC (nitrogen fixation protein RnfC) YP_864616.1 TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: sde:Sde_2400 NADH:ubiquinone oxidoreductase, subunit RnfB YP_864617.1 TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: vch:VC1017 RnfA-related protein YP_864618.1 PFAM: protein of unknown function DUF59; KEGG: mag:amb3487 ATPase involved in chromosome partitioning YP_864619.1 PFAM: protein of unknown function DUF218; KEGG: atc:AGR_L_144 hypothetical protein YP_864620.1 exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH YP_864621.1 KEGG: mca:MCA2638 hypothetical protein YP_864622.1 TIGRFAM: DNA binding domain, excisionase family; KEGG: rso:RSc3239 excisionase protein YP_864623.1 KEGG: rru:Rru_A0128 Na+/H+ antiporter NhaA YP_864624.1 TIGRFAM: methyltransferase FkbM family; KEGG: jan:Jann_0310 methyltransferase FkbM YP_864625.1 PFAM: aminotransferase, class I and II; KEGG: ret:RHE_CH02998 aspartate aminotransferase protein YP_864626.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-subunit beta is inserted between the strands, where it probes for the presence of a lesion YP_864628.1 PFAM: CheD family protein; KEGG: gme:Gmet_2419 CheD, stimulates methylation of MCP proteins YP_864629.1 KEGG: mag:amb4153 chemotaxis protein CheC YP_864630.1 PFAM: phosphoglycerate mutase; KEGG: noc:Noc_1928 phosphoglycerate/bisphosphoglycerate mutase YP_864631.1 KEGG: jan:Jann_1507 arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase YP_864632.1 PFAM: sporulation domain protein; KEGG: rso:RSc0286 hypothetical protein YP_864633.1 PFAM: glutamine amidotransferase, class-II; glutamate synthase, subunit alpha domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: noc:Noc_1604 glutamate synthase (ferredoxin) YP_864634.1 TIGRFAM: glutamate synthases, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: aba:acid345_3679 glutamate synthases, NADH/NADPH, small subunit YP_864635.1 KEGG: ana:all3838 similar to kinesin light chain YP_864636.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: lic:LIC12187 perosamine synthetase YP_864637.1 PFAM: cobalamin B12-binding domain protein; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mbu:Mbur_1602 Fe-S protein, radical SAM family YP_864638.1 PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: tdn:Tmden_0183 hypothetical protein YP_864640.1 PFAM: protein of unknown function DUF710; KEGG: sat:SYN_02981 hypothetical cytosolic protein YP_864641.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: sth:STH1192 5-formyltetrahydrofolate cyclo-ligase YP_864642.1 KEGG: pca:Pcar_2350 KH domain/HD domain protein; TIGRFAM: metal dependent phophohydrolase; PFAM: KH, type 1, domain protein; metal-dependent phosphohydrolase, HD sub domain; HDOD; SMART: metal-dependent phosphohydrolase, HD region; KH domain protein YP_864645.1 TIGRFAM: translation initiation factor IF-1; PFAM: RNA binding S1 domain protein; S1, IF1 family protein; KEGG: ssp:SSP0685 translation initiation factor IF-1 YP_864646.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_864648.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis YP_864649.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: rru:Rru_A1798 type I secretion outer membrane protein, TolC YP_864650.1 PFAM: nitrogen-fixing NifU domain protein; KEGG: pca:Pcar_2331 thioredoxin-like proteins and domains-like YP_864651.1 PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: sbo:SBO_0099 AmpD YP_864652.1 TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: noc:Noc_2347 UDP-N-acetylmuramate, L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase YP_864653.1 PFAM: protein of unknown function DUF179; KEGG: pha:PSHAa2600 hypothetical protein YP_864654.1 KEGG: tcx:Tcr_0203 hypothetical protein YP_864655.1 PFAM: pyruvate kinase; KEGG: rru:Rru_A2465 pyruvate kinase YP_864656.1 PFAM: Hemolysin-type calcium-binding region; KEGG: sde:Sde_1294 polyhydroxyalkanoate synthesis repressor PhaR YP_864657.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD; KEGG: mag:amb2378 membrane-fusion protein YP_864658.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: ATPase AAA; KEGG: mag:amb2377 ABC-type bacteriocin/lantibiotic exporters YP_864659.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: ATPase AAA; KEGG: mag:amb2376 ABC-type protease/lipase transporter, ATPase and permeases YP_864660.1 PFAM: helicase; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: xoo:XOO0166 ATP-dependent RNA helicase YP_864661.1 TIGRFAM: phosphonate ABC transporter periplasmic phosphonate-binding protein; KEGG: fnu:FN1135 phosphonates-binding protein YP_864662.1 TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; KEGG: mth:MTH1607 sensory transduction regulatory protein YP_864663.1 PFAM: uroporphyrinogen III synthase HEM4; KEGG: syf:Synpcc7942_0272 uroporphyrinogen-III synthase YP_864664.1 KEGG: sdn:Sden_0388 porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: porphobilinogen deaminase YP_864666.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: mag:amb3793 methyl-accepting chemotaxis protein YP_864667.1 KEGG: ade:Adeh_3687 metalloendopeptidase, , glycoprotease family; TIGRFAM: metalloendopeptidase, glycoprotease family; PFAM: peptidase M22, glycoprotease YP_864668.1 PFAM: NADP oxidoreductase, coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: gme:Gmet_0008 NAD-dependent glycerol-3-phosphate dehydrogenase-like YP_864669.1 KEGG: sma:SAV951 dTDP-6-deoxy-L-hexose 3-O-methyltransferase YP_864670.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: pca:Pcar_2345 transcriptional regulator, fis family YP_864671.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: pca:Pcar_2344 nitrogen regulation protein NtrY YP_864673.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_864674.1 TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ, GTPase; Tubulin/FtsZ domain protein; KEGG: sat:SYN_00437 cell division protein YP_864675.1 PFAM: cell division protein FtsA; KEGG: gsu:GSU3064 cell division protein FtsA YP_864676.1 PFAM: polypeptide-transport-associated domain protein, FtsQ-type; KEGG: bms:BR1427 cell division protein FtsQ YP_864677.1 KEGG: pca:Pcar_2199 D-alanine--D-alanine ligase; TIGRFAM: D-alanine--D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein YP_864678.1 KEGG: mag:amb3850 UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein YP_864679.1 TIGRFAM: UDP-N-acetylmuramate--alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: rpc:RPC_3305 UDP-N-acetylmuramate--alanine ligase YP_864680.1 KEGG: gme:Gmet_0412 N-acetylglucosaminyltransferase, MurG; TIGRFAM: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: glycosyl transferase, family 28; glycosyltransferase 28, C-terminal domain YP_864681.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: gme:Gmet_0411 cell cycle protein YP_864682.1 TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: gme:Gmet_0410 UDP-N-acetylmuramoylalanine-D-glutamate ligase YP_864683.1 KEGG: pca:Pcar_2205 phospho-N-acetylmuramoyl-pentapeptide-transferase; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: glycosyl transferase, family 4 YP_864684.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: noc:Noc_2865 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D -alanyl ligase YP_864685.1 TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetases; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: mta:Moth_0838 UDP-N-acetylmuramyl-tripeptide synthetases YP_864686.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: gsu:GSU3075 penicillin-binding protein YP_864688.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: pca:Pcar_2210 S-adenosyl-methyltransferase MraW YP_864689.1 PFAM: carbamoyltransferase; KEGG: mag:amb0035 predicted carbamoyl transferase YP_864690.1 KEGG: mag:amb0034 hypothetical protein YP_864691.1 KEGG: mag:amb0033 hypothetical protein YP_864693.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: gsu:GSU0018 transcriptional regulator, GntR family/aminotransferase class-I YP_864694.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate YP_864695.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; KEGG: cya:CYA_2679 UDP-glucose 4-epimerase YP_864696.1 PFAM: glycosyl transferase, family 2; KEGG: hch:HCH_04688 glycosyltransferase involved in cell wall biogenesis YP_864697.1 KEGG: gme:Gmet_1707 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_864698.1 KEGG: ppu:PP1308 methionine gamma-lyase; TIGRFAM: methionine gamma-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase, class I and II YP_864699.1 KEGG: plt:Plut_0488 hypothetical protein YP_864700.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bpa:BPP3781 LysR-family transcriptional regulator YP_864701.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: neu:NE2510 NADH:flavin oxidoreductase/NADH oxidase YP_864702.1 PFAM: pirin domain protein; Pirin domain protein; KEGG: gvi:glr2532 hypothetical protein YP_864703.1 PFAM: response regulator receiver; KEGG: plt:Plut_2012 response regulator receiver domain protein (CheY-like) YP_864705.1 PFAM: invasion associated locus B family protein; KEGG: rpa:RPA0830 hypothetical protein YP_864706.1 PFAM: polypeptide-transport-associated domain protein, ShlB-type; KEGG: cvi:CV1468 probable activation/secretion signal peptide protein YP_864707.1 TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: Haemagluttinin repeat-containing protein; filamentous haemagglutinin domain protein; KEGG: dps:DPPB56 hypothetical protein YP_864708.1 KEGG: gme:Gmet_1707 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_864709.1 PFAM: extracellular solute-binding protein, family 3; KEGG: mag:amb2290 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain YP_864710.1 PFAM: helicase; SMART: DEAD-like helicases-like; KEGG: nha:Nham_0580 helicase-like YP_864711.1 KEGG: nha:Nham_0581 hypothetical protein YP_864712.1 KEGG: eba:ebA2161 hypothetical protein YP_864714.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: noc:Noc_2928 site-specific DNA-methyltransferase (adenine-specific) YP_864715.1 KEGG: msu:MS2166 hypothetical protein YP_864716.1 TIGRFAM: death-on-curing family protein; PFAM: Death-on-curing protein; KEGG: wsu:WS1132 hypothetical protein YP_864717.1 PFAM: type III restriction enzyme, res subunit; KEGG: cte:CT0911 type III restriction system endonuclease YP_864718.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: dps:DP0292 chemotaxis transducer YP_864720.1 KEGG: tbd:Tbd_1253 hypothetical protein YP_864721.1 PFAM: SirA family protein; KEGG: tbd:Tbd_0574 hypothetical protein YP_864722.1 PFAM: regulatory protein, TetR; KEGG: tbd:Tbd_1255 TetR family transcriptional regulator YP_864724.1 PFAM: BLUF domain protein; KEGG: bba:Bd0763 hypothetical protein YP_864725.1 PFAM: ion transporter; KEGG: jan:Jann_0087 ion transporter YP_864727.1 KEGG: bja:bll5240 hypothetical protein YP_864728.1 KEGG: gox:GOX1742 hypothetical protein YP_864729.1 KEGG: xac:XAC2252 hypothetical protein YP_864730.1 TIGRFAM: RNA polymerase sigma factor RpoD; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70, non-essential domain protein; sigma-70 region 1.2; KEGG: mag:amb0697 DNA-directed RNA polymerase YP_864731.1 KEGG: eba:ebA4367 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger, CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core, N-terminal domain; SMART: Toprim sub domain protein YP_864732.1 PFAM: GatB/Yqey domain protein; KEGG: pca:Pcar_2682 hypothetical protein YP_864733.1 PFAM: carboxymuconolactone decarboxylase; Rieske [2Fe-2S] domain protein; KEGG: ret:RHE_CH01781 nitrite reductase [NAD(P)H], small subunit protein YP_864734.1 KEGG: mag:amb1448 hypothetical protein YP_864735.1 PFAM: polysaccharide export protein; KEGG: hch:HCH_04680 periplasmic protein involved in polysaccharide export YP_864736.1 KEGG: tcr:504039.180 mucin-associated surface protein (MASP) Pfam: Mucin PROSITE: ALA_RICH GLU_RICH YP_864737.1 KEGG: noc:Noc_0672 transposase, IS4 YP_864738.1 catalyzes the oxidation of malate to oxaloacetate YP_864739.1 KEGG: gsu:GSU1818 phosphoglycerate mutase family protein; TIGRFAM: phosphonopyruvate decarboxylase-related protein; proposed homoserine kinase; PFAM: metalloenzyme domain protein YP_864740.1 PFAM: ribosomal protein L28; KEGG: sil:SPO0974 ribosomal protein L28 YP_864742.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: gsu:GSU1432 TPR domain protein YP_864744.1 TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase, C terminal domain protein; KEGG: csa:Csal_1525 4-diphosphocytidyl-2C-methyl-D-erythritol kinase YP_864745.1 KEGG: bbr:BB0901 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase YP_864746.1 TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal protein L25; KEGG: nar:Saro_2115 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 YP_864747.1 PFAM: peptidyl-tRNA hydrolase; KEGG: rsp:RSP_0824 peptidyl-tRNA hydrolase YP_864748.1 TIGRFAM: GTP-binding protein YchF; PFAM: GTP-binding protein, HSR1-related; protein of unknown function DUF933; KEGG: pca:Pcar_2000 GTP binding protein YchF YP_864749.1 KEGG: cvi:CV0776 homoserine kinase; TIGRFAM: homoserine kinase; PFAM: aminoglycoside phosphotransferase YP_864750.1 TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: cvi:CV3337 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_864751.1 PFAM: peptidase U32; KEGG: bpm:BURPS1710b_2814 family U32 unassigned peptidase YP_864752.1 PFAM: peptidase U32; KEGG: rfr:Rfer_0135 peptidase U32 YP_864753.1 PFAM: protein of unknown function DUF526; KEGG: gox:GOX1133 hypothetical protein YP_864754.1 PFAM: aldehyde dehydrogenase; KEGG: nar:Saro_2378 aldehyde dehydrogenase YP_864755.1 KEGG: gsu:GSU0489 Mg chelatase-related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; SMART: AAA ATPase YP_864756.1 PFAM: helix-turn-helix domain protein; bacteriophage CI repressor; Cupin 2, conserved barrel domain protein; KEGG: cps:CPS_3286 DNA-binding protein YP_864757.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_864758.1 PFAM: ribosomal protein L33; KEGG: aae:aq_1930a 50S ribosomal protein L33 YP_864759.1 TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: tcx:Tcr_0282 SecE subunit of protein translocation complex YP_864760.1 KEGG: mag:amb3146 transcription antiterminator; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG; KOW domain protein; SMART: NGN domain protein; KOW (Kyrpides, Ouzounis, Woese) domain protein YP_864761.1 PFAM: ribosomal protein L11; KEGG: bja:bll5415 50S ribosomal protein L11 YP_864762.1 PFAM: ribosomal protein L1; KEGG: rru:Rru_A2698 ribosomal protein L1 YP_864763.1 PFAM: ribosomal protein L10; KEGG: pca:Pcar_0692 ribosomal protein L10 YP_864764.1 TIGRFAM: ribosomal protein L7/L12; PFAM: ribosomal protein L7/L12-like; KEGG: oih:OB0110 50S ribosomal protein L7/L12 YP_864765.1 KEGG: rru:Rru_A2695 DNA-directed RNA polymerase, beta subunit; TIGRFAM: DNA-directed RNA polymerase subunit beta; PFAM: RNA polymerase Rpb2, domain 6; RNA polymerase Rpb2, domain 7; RNA polymerase Rpb2, domain 2; RNA polymerase subunit beta; RNA polymerase Rpb2, domain 3 YP_864766.1 KEGG: rru:Rru_A2694 DNA-directed RNA polymerase; TIGRFAM: DNA-directed RNA polymerase subunit beta' PFAM: RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 5; RNA polymerase Rpb1, domain 4; SMART: RNA polymerase I subunit A domain protein YP_864767.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_864768.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_864769.1 TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; elongation factor G, domain IV; KEGG: pca:Pcar_0698 translation elongation factor G YP_864770.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_864771.1 PFAM: ribosomal protein S10; KEGG: rru:Rru_A2689 ribosomal protein S10 YP_864772.1 PFAM: ribosomal protein L3; KEGG: rsp:RSP_1716 50S ribosomal protein L3 YP_864773.1 PFAM: ribosomal protein L4/L1e; KEGG: gka:GK0107 50S ribosomal protein L4 YP_864774.1 PFAM: ribosomal protein L25/L23; KEGG: cvi:CV4184 50S ribosomal protein L23 YP_864775.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_864776.1 TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; KEGG: pca:Pcar_0705 probable 30S ribosomal protein S19 YP_864777.1 TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17; KEGG: ftl:FTL_0241 50S ribosomal protein L22 YP_864778.1 KEGG: rru:Rru_A2682 ribosomal protein S3; TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3-C-terminal domain protein; KH, type 2 domain protein; ribosomal protein S3, N-terminal domain; SMART: KH domain protein YP_864779.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_864780.1 PFAM: ribosomal protein L29; KEGG: gka:GK0114 50S ribosomal protein L29 YP_864781.1 PFAM: ribosomal protein S17; KEGG: cvi:CV4177 30S ribosomal protein S17 YP_864782.1 TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; KEGG: dde:Dde_2247 ribosomal protein L14 YP_864783.1 KEGG: mag:amb3119 ribosomal protein L24; TIGRFAM: ribosomal protein L24; PFAM: KOW domain protein; SMART: KOW (Kyrpides, Ouzounis, Woese) domain protein YP_864784.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_864785.1 PFAM: ribosomal protein S14; KEGG: aba:acid345_1239 ribosomal protein S14 YP_864786.1 PFAM: ribosomal protein S8; KEGG: sde:Sde_0973 30S ribosomal protein S8 YP_864787.1 PFAM: ribosomal protein L6; KEGG: tcx:Tcr_0310 ribosomal protein L6 YP_864788.1 TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: bqu:BQ08070 50S ribosomal protein L18 YP_864789.1 TIGRFAM: ribosomal protein S5; PFAM: ribosomal protein S5 domain protein; ribosomal protein S5-like; KEGG: mag:amb3113 ribosomal protein S5 YP_864790.1 PFAM: ribosomal protein L30; KEGG: lsl:LSL_1417 LSU ribosomal protein L30P YP_864791.1 PFAM: ribosomal protein L15; KEGG: pca:Pcar_0720 ribosomal protein L15 YP_864792.1 TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; KEGG: sat:SYN_01595 protein translocase subunit YP_864793.1 PFAM: ribosomal protein L36; KEGG: csa:Csal_0442 ribosomal protein L36 YP_864794.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_864795.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_864796.1 PFAM: ribosomal protein S4; RNA-binding S4 domain protein; KEGG: nmu:Nmul_A0791 ribosomal protein S4 YP_864797.1 KEGG: mag:amb3108 DNA-directed RNA polymerase, alpha subunit/40 kD subunit; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase, subunit alpha domain protein; RNA polymerase, dimerisation; RNA polymerase, insert; SMART: RNA polymerase, RpoA/D/Rpb3-type YP_864798.1 PFAM: ribosomal protein L17; KEGG: sil:SPO0512 ribosomal protein L17 YP_864800.1 PFAM: transposase IS66; KEGG: hal:VNG0056H hypothetical protein encoded by ISH10 YP_864801.1 PFAM: protein of unknown function DUF62; KEGG: cyb:CYB_0252 hypothetical protein YP_864802.1 KEGG: rfr:Rfer_3635 cytochrome C family protein YP_864803.1 PFAM: cytochrome B561; KEGG: rfr:Rfer_3634 cytochrome b561 YP_864804.1 PFAM: glutamine amidotransferase, class-II; KEGG: pol:Bpro_1189 glutamine amidotransferase, class-II YP_864805.1 PFAM: hydrogenase formation HypD protein; KEGG: nmu:Nmul_A1667 hydrogenase formation HypD protein YP_864806.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pho:PH1290 cytochrome-c3 hydrogenase alpha chain YP_864807.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding domain protein; KEGG: pab:PAB0639 cytochrome-c3 hydrogenase subunit gamma YP_864808.1 PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: tko:TK2070 cytosolic NiFe-hydrogenase, subunit delta YP_864809.1 PFAM: nickel-dependent hydrogenase, large subunit; KEGG: pho:PH1294 cytochrome-c3 hydrogenase alpha chain YP_864811.1 PFAM: peptidase M48, Ste24p; KEGG: sru:SRU_0656 CAAX prenyl protease 1 YP_864812.1 KEGG: ppu:PP0672 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_864813.1 PFAM: 3'-5' exonuclease; KEGG: dvu:DVU1082 3'-5' exonuclease domain protein YP_864815.1 PFAM: hypothetical protein; KEGG: rru:Rru_A0868 peptidase C14, caspase catalytic subunit P20 YP_864816.1 PFAM: AMP-dependent synthetase and ligase; KEGG: noc:Noc_2380 AMP-dependent synthetase and ligase YP_864818.1 PFAM: radical SAM protein; KEGG: mca:MCA0073 pyruvate formate lyase-activating enzyme YP_864819.1 PFAM: ferric-uptake regulator; KEGG: eba:ebB167 ferric uptake regulation protein (ferric uptake regulator) YP_864820.1 KEGG: dar:Daro_0973 PAS; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_864821.1 KEGG: neu:NE1856 hypothetical protein YP_864822.1 KEGG: rru:Rru_A1600 citrate synthase I; TIGRFAM: citrate synthase I; PFAM: citrate synthase YP_864823.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: mca:MCA2270 acetolactate synthase large subunit YP_864824.1 TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: gme:Gmet_1261 acetolactate synthase, small subunit YP_864825.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_864826.1 KEGG: bmb:BruAb1_0465 phosphatidylserine decarboxylase-related protein; TIGRFAM: phosphatidylserine decarboxylase related protein; PFAM: phosphatidylserine decarboxylase-related YP_864827.1 TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: tcx:Tcr_0610 CDP-diacylglycerol--serine O-phosphatidyltransferase YP_864828.1 TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: mca:MCA2275 2-isopropylmalate synthase YP_864830.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_864831.1 KEGG: mca:MCA1465 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B YP_864832.1 PFAM: ribonuclease III; double-stranded RNA binding domain protein; KEGG: mfa:Mfla_1007 ribonuclease III YP_864833.1 TIGRFAM: small GTP-binding protein; GTP-binding protein Era; PFAM: GTP-binding protein, HSR1-related; KH, type 2 domain protein; KEGG: bld:BLi02720 GTP-binding protein; RBL03905 YP_864834.1 TIGRFAM: DNA repair protein RecO; PFAM: recombination protein O, RecO; KEGG: gme:Gmet_2943 recombination protein O, RecO YP_864835.1 PFAM: protein of unknown function DUF343; KEGG: dar:Daro_3207 protein of unknown function DUF343 YP_864836.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; KEGG: det:DET1425 hypothetical protein YP_864837.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: pca:Pcar_2212 probable hemolysin-related protein YP_864838.1 KEGG: syf:Synpcc7942_1608 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase, type II; nucleotidyl transferase; Cupin 2, conserved barrel domain protein YP_864839.1 PFAM: histone family protein DNA-binding protein; KEGG: aci:ACIAD1408 DNA-binding protein HU-beta YP_864840.1 KEGG: rru:Rru_A1042 hypothetical protein YP_864842.1 KEGG: cch:Cag_0613 SapC-related protein YP_864843.1 PFAM: chemotaxis sensory transducer; KEGG: dps:DP2993 probable methyl-accepting chemotaxis protein (McpB) YP_864844.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: cch:Cag_1938 Sel1-like repeat YP_864845.1 PFAM: carbamoyltransferase; KEGG: mca:MCA1163 nodulation protein nolNO YP_864846.1 PFAM: glycosyl transferase, family 4; KEGG: mca:MCA1133 undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase YP_864847.1 PFAM: sporulation domain protein YP_864848.1 PFAM: sporulation domain protein; KEGG: xcb:XC_3284 hypothetical protein YP_864849.1 KEGG: ava:Ava_2675 multi-sensor hybrid histidine kinase YP_864850.1 KEGG: dps:DP1938 related to tetraacyldisaccharide 4'-kinase (LpxK); TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase YP_864851.1 PFAM: 3-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: csa:Csal_0018 three-deoxy-D-manno-octulosonic-acid transferase-like protein YP_864852.1 TIGRFAM: pilus (MSHA type) biogenesis protein MshL; PFAM: type II and III secretion system protein; KEGG: bbr:BB0784 type II secretion system protein YP_864854.1 PFAM: peptidoglycan-binding protein; sporulation domain protein; SMART: ATPase AAA; KEGG: bbr:BB0782 type II secretion system protein YP_864855.1 PFAM: type II secretion system protein E; general secretory system II, protein E domain protein; KEGG: bbr:BB0781 type II secretion system protein YP_864856.1 PFAM: type II secretion system protein; KEGG: bbr:BB0780 type II secretion system protein YP_864857.1 KEGG: bbr:BB0790 type II secretion system protein YP_864861.1 PFAM: protein kinase; Sel1 domain protein repeat-containing protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: nmu:Nmul_A0104 Sel1-like repeat YP_864862.1 PFAM: helicase; SMART: DEAD-like helicases-like; KEGG: tdn:Tmden_1967 helicase-like YP_864863.1 KEGG: lpn:lpg0596 hypothetical protein YP_864864.1 PFAM: ROK family protein; KEGG: mca:MCA0661 ROK family protein YP_864865.1 PFAM: beta-lactamase; KEGG: mba:Mbar_A3142 metal dependent hydrolase YP_864866.1 TIGRFAM: aspartyl-tRNA synthetase; PFAM: GAD domain protein; tRNA synthetase, class II (D, K and N); nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: pca:Pcar_1040 aspartyl-tRNA synthetase YP_864867.1 PFAM: SEC-C motif domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: neu:NE0808 SecA protein:SEC-C motif YP_864868.1 TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: mca:MCA1234 glutamyl-tRNA synthetase YP_864869.1 KEGG: ilo:IL1714 anti-anti-sigma regulatory factor YP_864870.1 KEGG: ppu:PP4364 anti-sigma F factor antagonist YP_864871.1 TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: radical SAM protein; KEGG: sde:Sde_1081 hypothetical protein YP_864872.1 TIGRFAM: translation elongation factor P; PFAM: Elongation factor P/YeiP protein; Elongation factor, KOW domain protein; KEGG: lpn:lpg0287 translation elongation factor P (EF-P) YP_864873.1 PFAM: tRNA synthetase, class II (D, K and N); KEGG: vvy:VV3096 lysyl-tRNA synthetase-related protein YP_864874.1 PFAM: redoxin; KEGG: gka:GK1635 hypothetical protein YP_864875.1 KEGG: pca:Pcar_0283 hypothetical protein YP_864876.1 PFAM: cyclic nucleotide-binding; KEGG: mlo:mlr3256 hypothetical protein YP_864877.1 PFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; KEGG: gsu:GSU2569 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase YP_864880.1 PFAM: sporulation domain protein; KEGG: dar:Daro_3404 ATPas YP_864881.1 KEGG: sil:SPO3160 hypothetical protein YP_864882.1 KEGG: dar:Daro_0836 hypothetical protein YP_864884.1 PFAM: CBS domain containing protein; KEGG: pca:Pcar_1004 CBS domain containing membrane protein YP_864885.1 PFAM: protein of unknown function UPF0079; KEGG: yps:YPTB0421 hypothetical protein YP_864886.1 PFAM: aminoglycoside phosphotransferase; KEGG: mca:MCA0600 hypothetical protein YP_864887.1 PFAM: nucleotidyl transferase; KEGG: pfl:PFL_5644 nucleotidyltransferase family protein YP_864888.1 PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: atc:AGR_C_3159 probable protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_864890.1 KEGG: gme:Gmet_1880 aspartate kinase; TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein YP_864891.1 TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: pca:Pcar_1007 2-isopropylmalate synthase YP_864893.1 PFAM: nitrogen regulatory protein P-II; KEGG: mag:amb0695 nitrogen regulatory protein PII YP_864894.1 PFAM: protein of unknown function DUF302; KEGG: tbd:Tbd_2156 hypothetical protein YP_864895.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: gvi:gll2226 hypothetical protein YP_864896.1 KEGG: noc:Noc_0987 hypothetical protein YP_864897.1 PFAM: UvrD/REP helicase; KEGG: noc:Noc_0988 UvrD/REP helicase YP_864898.1 PFAM: conserved hypothetical protein 730; KEGG: sat:SYN_01766 lysine decarboxylase family YP_864899.1 PFAM: polynucleotide adenylyltransferase region; KEGG: dge:Dgeo_0612 metal dependent phosphohydrolase YP_864900.1 KEGG: mag:amb0214 2-methylthioadenine synthetase; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: radical SAM protein; protein of unknown function UPF0004-like; SMART: Elongator protein 3/MiaB/NifB YP_864901.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; KR; KEGG: gme:Gmet_3144 NAD-dependent epimerase/dehydratase YP_864902.1 PFAM: transposase, IS4 family protein; KEGG: eba:p1B277 hypothetical protein, probable transposase YP_864903.1 PFAM: outer membrane efflux protein; KEGG: neu:NE0036 outer membrane efflux protein YP_864904.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: vch:VCA0639 AcrA/AcrE family protein YP_864905.1 PFAM: acriflavin resistance protein; KEGG: son:SO3103 AcrB/AcrD/AcrF family protein YP_864908.1 KEGG: mag:amb0164 hypothetical protein YP_864911.1 KEGG: rru:Rru_A1783 hypothetical protein YP_864912.1 KEGG: rru:Rru_A2086 glutamine synthetase type I; TIGRFAM: glutamine synthetase; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp YP_864913.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: mfa:Mfla_0682 ABC transporter YP_864914.1 KEGG: noc:Noc_2645 ABC transporter permease YP_864915.1 KEGG: neu:NE2551 hypothetical protein YP_864917.1 PFAM: EAL domain protein; KEGG: mfa:Mfla_2288 diguanylate phosphodiesterase (EAL domain) YP_864918.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: psp:PSPPH_5001 ammonium transporter YP_864919.1 PFAM: nitrogen regulatory protein P-II; KEGG: cvi:CV4002 nitrogen regulatory protein P-II-2 YP_864920.1 KEGG: lma:LmjF03.0270 hypothetical protein YP_864921.1 KEGG: pfl:PFL_5943 hypothetical protein YP_864922.1 PFAM: HDOD; KEGG: mag:amb2955 response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain YP_864923.1 PFAM: OmpA/MotB domain protein; KEGG: pcr:Pcryo_0954 hypothetical protein YP_864925.1 KEGG: noc:Noc_1326 sterol desaturase-related protein YP_864926.1 PFAM: heat shock protein DnaJ domain protein; KEGG: mhu:Mhun_0257 heat shock protein DnaJ-like YP_864927.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: haloacid dehalogenase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: sat:SYN_01290 copper-exporting ATPase YP_864928.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: hch:HCH_04449 predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain YP_864930.1 PFAM: nitroreductase; KEGG: mfa:Mfla_1136 nitroreductase YP_864931.1 PFAM: CheD family protein; KEGG: tdn:Tmden_0977 CheD, stimulates methylation of MCP proteins YP_864932.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: tdn:Tmden_0976 histidine kinase YP_864933.1 TIGRFAM: DJ-1 family protein; PFAM: ThiJ/PfpI domain protein; KEGG: tbd:Tbd_1845 protease YP_864934.1 PFAM: YCII-related; KEGG: tbd:Tbd_1530 hypothetical protein YP_864936.1 KEGG: ret:RHE_CH01094 hypothetical protein YP_864938.1 KEGG: ret:RHE_CH01103 hypothetical protein YP_864941.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_864942.1 KEGG: xcv:XCV3445 binfunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor, GTP-binding; adenylylsulfate kinase; elongation factor Tu, domain 2 protein YP_864943.1 KEGG: hch:HCH_04519 ABC-type branched-chain amino acid transporter, periplasmic component YP_864944.1 PFAM: inner-membrane translocator; PBS lyase HEAT domain protein repeat-containing protein; KEGG: sme:SMb20604 ureashort-chain amide or branched-chain amino acid uptake ABC transporter permease, possibly fusion protein YP_864945.1 PFAM: inner-membrane translocator; KEGG: hch:HCH_04516 ABC-type branched-chain amino acid transporter, permease YP_864946.1 PFAM: ABC transporter; KEGG: hch:HCH_04515 uncharacterized ABC-type transporter, ATPase component YP_864947.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: hch:HCH_04514 ABC-type branched-chain amino acid transporter, ATPase component YP_864948.1 PFAM: Urease accessory protein UreD; KEGG: bja:blr1453 urease accessory protein YP_864949.1 KEGG: rpb:RPB_1800 urease, subunit gamma; TIGRFAM: urease, subunit gamma; PFAM: Urease, subunit gamma region YP_864950.1 KEGG: rsp:RSP_0308 urease subunit beta; TIGRFAM: urease, subunit beta; PFAM: Urease subunit beta YP_864951.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits YP_864952.1 PFAM: UreE urease accessory domain protein; KEGG: rpc:RPC_3691 UreE urease accessory-like YP_864953.1 PFAM: Urease accessory protein UreF; KEGG: rpd:RPD_3497 urease accessory protein UreF YP_864954.1 TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein, P47K; KEGG: ppu:PP2849 urease accessory protein UreG YP_864955.1 TIGRFAM: peptide chain release factor 2; PFAM: class I peptide chain release factor; PCRF domain protein; KEGG: bps:BPSL2280 peptide chain release factor 2 YP_864956.1 TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase, class II (D, K and N); nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: rme:Rmet_1034 lysyl-tRNA synthetase YP_864957.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: gsu:GSU2270 ABC transporter permease YP_864958.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gme:Gmet_2358 ABC transporter-related protein YP_864959.1 KEGG: dar:Daro_4142 PAS; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_864960.1 PFAM: peptidase M50; KEGG: dar:Daro_2460 peptidase M50 YP_864961.1 KEGG: son:SO0294 tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase, class Ib YP_864962.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: hit:NTHI1370 ribosomal large subunit pseudouridine synthase B YP_864963.1 PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: det:DET1612 DNA repair protein, HhH-GPD family YP_864964.1 TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region, ATPase domain protein domain protein; DNA mismatch repair protein, C-terminal domain protein; KEGG: mag:amb4416 DNA mismatch repair enzyme YP_864965.1 KEGG: hch:HCH_05071 predicted membrane protein YP_864966.1 PFAM: Na+/solute symporter; KEGG: eli:ELI_04655 sodium:solute symporter family protein YP_864967.1 PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294, nucleotidyltransferase KEGG: cps:CPS_4954 CBS domain protein YP_864968.1 PFAM: exonuclease, RNase T and DNA polymerase III; SMART: exonuclease; KEGG: cps:CPS_4955 DNA polymerase III subunit epsilon YP_864969.1 KEGG: neu:NE1223 transposase YP_864970.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; histidine kinase, HAMP region domain protein; KEGG: mag:amb3618 adenylate cyclase 1 YP_864971.1 TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; KEGG: pca:Pcar_1058 rRNA methylase-like YP_864972.1 TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: transketolase, central region; transketolase; KEGG: noc:Noc_1743 1-deoxy-D-xylulose-5-phosphate synthase YP_864973.1 PFAM: polyprenyl synthetase; KEGG: gsu:GSU1765 geranyltranstransferase YP_864974.1 TIGRFAM: exodeoxyribonuclease VII small subunit; PFAM: exonuclease VII, small subunit; KEGG: efa:EF0980 exodeoxyribonuclease VII small subunit YP_864975.1 PFAM: peptidase M23B; KEGG: noc:Noc_2436 peptidase M23B YP_864976.1 KEGG: ssn:SSO_2591 exonuclease VII, large subunit; TIGRFAM: exodeoxyribonuclease VII large subunit; PFAM: exonuclease VII, large subunit; nucleic acid binding, OB-fold, tRNA/helicase-type YP_864977.1 PFAM: protein of unknown function DUF455; KEGG: noc:Noc_2112 protein of unknown function DUF455 YP_864979.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: ana:alr3336 similar to methionine adenosyltransferase YP_864980.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: mag:amb0071 SAM-dependent methyltransferase YP_864981.1 PFAM: radical SAM protein; KEGG: mag:amb0070 predicted Fe-S oxidoreductase YP_864982.1 PFAM: transketolase, central region; transketolase domain protein; KEGG: mag:amb0067 transketolase C-terminal section YP_864983.1 PFAM: transketolase; KEGG: mag:amb0066 transketolase N-terminal section YP_864984.1 PFAM: aminoglycoside phosphotransferase; KEGG: bja:blr5425 hypothetical protein YP_864985.1 KEGG: mag:amb0064 hypothetical protein YP_864986.1 TIGRFAM: cytidyltransferase-related domain; PFAM: cytidylyltransferase; PfkB domain protein; KEGG: mag:amb0062 ADP-heptose synthase YP_864987.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: lil:LA1580 UDP-glucose 4-epimerase YP_864988.1 PFAM: radical SAM protein; KEGG: tdn:Tmden_0182 radical SAM YP_864989.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_864990.1 PFAM: electron transporter SCO1/SenC; KEGG: mca:MCA1191 SCO1/SenC family protein YP_864991.1 PFAM: protein of unknown function DUF461; KEGG: vvu:VV21240 hypothetical protein YP_864992.1 KEGG: son:SO1135 hypothetical protein YP_864993.1 KEGG: ilo:IL1620 hypothetical protein YP_864995.1 PFAM: CheW domain protein; KEGG: dps:DP2643 related to purine-binding chemotaxis protein CheW YP_864996.1 TIGRFAM: DNA gyrase subunit alpha; PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal repeat, beta-propeller; KEGG: vpa:VP1932 DNA gyrase subunit A YP_864997.1 TIGRFAM: seryl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S); seryl-tRNA synthetase, class IIa; KEGG: gme:Gmet_3528 seryl-tRNA synthetase YP_864998.1 PFAM: protein of unknown function DUF86; KEGG: neu:NE2225 protein of unknown function DUF86 YP_864999.1 PFAM: DNA polymerase, beta domain protein region; KEGG: neu:NE2224 hypothetical protein YP_865000.1 KEGG: mca:MCA1303 glutathione S-transferase YP_865001.1 PFAM: ATPase AAA, central domain protein; KEGG: mca:MCA0262 ATPase, AAA family YP_865003.1 PFAM: lipolytic enzyme, G-D-S-L family YP_865004.1 PFAM: sulfate transporter/antisigma-factor antagonist STAS; xanthine/uracil/vitamin C permease; sulfate transporter; KEGG: cps:CPS_4141 sulfate permease family protein YP_865005.1 PFAM: saccharopine dehydrogenase; KEGG: dvu:DVU0418 saccharopine dehydrogenase YP_865006.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: sde:Sde_1596 3-oxoacyl-(acyl-carrier-protein) reductase YP_865007.1 KEGG: sru:SRU_2747 ATP-dependent helicase HrpB; TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase; helicase-associated domain protein; DEAD/DEAH box helicase; Helicase ATP-dependent, C-terminal domain protein; SMART: DEAD-like helicases-like YP_865008.1 PFAM: peptidase M20; KEGG: oih:OB3286 N-carbamoyl-L-amino acid amidohydrolase YP_865010.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: tbd:Tbd_0522 HesA/MoeB/ThiF family protein YP_865011.1 PFAM: TatD-related deoxyribonuclease; KEGG: cvi:CV0628 probable deoxyribonuclease YP_865013.1 KEGG: tbd:Tbd_2013 hypothetical protein YP_865016.1 KEGG: dps:DP2650 chemotaxis protein CheX YP_865017.1 PFAM: cytochrome C, class I; KEGG: neu:NE1720 cytochrome c, class I YP_865018.1 KEGG: sde:Sde_3233 hypothetical protein; TIGRFAM: outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; cadherin; Ig family protein; LVIVD repeat protein; FG-GAP repeat protein; SMART: PKD domain containing protein; LamG domain protein jellyroll fold domain protein; Dystroglycan-type cadherin domain protein; Integrin alpha beta-propellor repeat protein YP_865020.1 PFAM: AFG1-family ATPase; KEGG: sil:SPO3819 ATPase, AFG1 family YP_865021.1 KEGG: sdn:Sden_0946 hypothetical protein YP_865022.1 PFAM: CoA-binding protein; KEGG: mbu:Mbur_1347 acyl-CoA synthetase YP_865023.1 KEGG: mag:amb2644 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; Hpt domain protein; hypothetical protein; SMART: PAS domain containing protein YP_865024.1 PFAM: cyclic nucleotide-binding; KEGG: dar:Daro_1294 cyclic nucleotide-binding:bacterial regulatory protein, Crp YP_865025.1 PFAM: major facilitator superfamily MFS_1; KEGG: rru:Rru_A2491 major facilitator superfamily MFS_1 YP_865026.1 PFAM: rhodanese; regulatory protein, ArsR; KEGG: tbd:Tbd_2736 rhodanese-like protein YP_865027.1 PFAM: DsrE family protein; KEGG: sdy:SDY_1271 hypothetical protein YP_865028.1 KEGG: noc:Noc_1326 sterol desaturase-related protein YP_865029.1 PFAM: rhodanese; KEGG: lpn:lpg0596 hypothetical protein YP_865030.1 PFAM: cytochrome C, class II; KEGG: rru:Rru_A2256 cytochrome C, class II YP_865031.1 KEGG: neu:NE1223 transposase YP_865032.1 PFAM: type II and III secretion system protein; KEGG: psp:PSPPH_3054 general secretion pathway protein GspD YP_865034.1 PFAM: cyclic nucleotide-binding; sulfate transporter/antisigma-factor antagonist STAS; xanthine/uracil/vitamin C permease; sulfate transporter; KEGG: mag:amb3535 sulfate permease and related transporters YP_865035.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; CHASE2 domain protein; KEGG: pol:Bpro_0721 adenylate/guanylate cyclase YP_865036.1 KEGG: mfa:Mfla_1127 hypothetical protein YP_865037.1 KEGG: mfa:Mfla_1126 hypothetical protein YP_865038.1 KEGG: sdn:Sden_0236 hypothetical protein YP_865039.1 PFAM: histone family protein DNA-binding protein; KEGG: tcx:Tcr_1180 histone-like DNA-binding protein YP_865040.1 PFAM: cobalamin B12-binding domain protein; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mka:MK0895 Fe-S oxidoreductase YP_865041.1 TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase, family 3; KEGG: sat:SYN_01945 anthranilate phosphoribosyltransferase YP_865042.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: ppu:PP0420 anthranilate synthase component II YP_865043.1 KEGG: gme:Gmet_2497 anthranilate synthase component I; TIGRFAM: anthranilate synthase component I; PFAM: anthranilate synthase component I and chorismate binding protein; anthranilate synthase component I domain protein YP_865044.1 KEGG: mba:Mbar_A2664 hypothetical protein YP_865045.1 KEGG: mag:amb0343 hypothetical protein YP_865046.1 PFAM: Recombinase; KEGG: mag:amb0344 site-specific recombinase YP_865048.1 PFAM: Integrase, catalytic region; KEGG: lpf:lpl1576 hypothetical protein YP_865049.1 PFAM: transposase IS3/IS911 family protein; KEGG: par:Psyc_1688 transposase OrfA, IS3/IS911family YP_865050.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron, maturase-specific domain protein; KEGG: plu:plu1111 hypothetical protein YP_865051.1 KEGG: rso:RSp0548 ISRSO8-transposase orfB protein YP_865052.1 KEGG: fra:Francci3_2696 hypothetical protein YP_865053.1 PFAM: protein of unknown function DUF323; KEGG: dps:DP2422 hypothetical protein YP_865054.1 PFAM: transposase IS66; KEGG: hal:VNG0056H hypothetical protein encoded by ISH10 YP_865056.1 PFAM: acyltransferase 3; KEGG: hch:HCH_04941 predicted acyltransferase YP_865057.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: sai:Saci_1030 hypothetical protein YP_865059.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: noc:Noc_1950 short-chain dehydrogenase/reductase SDR YP_865060.1 PFAM: FAD linked oxidase; KEGG: rpc:RPC_4213 FAD linked oxidase-like YP_865061.1 PFAM: glycosyl transferase, family 2; KEGG: hch:HCH_06165 glycosyltransferase, probably involved in cell wall biogenesis YP_865062.1 PFAM: acyltransferase 3; KEGG: hch:HCH_01439 predicted acyltransferase YP_865063.1 PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein; KEGG: atc:AGR_C_2249 blue-light photoreceptor YP_865064.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; methyltransferase type 11; methyltransferase type 12; KEGG: dde:Dde_2892 hypothetical protein YP_865065.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; Cache, type 2 domain protein; KEGG: aae:aq_563 hypothetical protein YP_865066.1 PFAM: peptidase M50; KEGG: eca:ECA0803 hypothetical protein YP_865067.1 PFAM: outer membrane efflux protein; sporulation domain protein; KEGG: cvi:CV0465 hypothetical protein YP_865068.1 KEGG: cvi:CV0466 hypothetical protein YP_865069.1 TIGRFAM: outer membrane adhesin like proteiin; KEGG: pub:SAR11_0932 hypothetical protein YP_865070.1 KEGG: dme:CG7709-PA CG7709 gene product from transcript CG7709-RA YP_865071.1 KEGG: pfo:Pfl_0146 hypothetical protein YP_865072.1 KEGG: pgi:PG0114 hypothetical protein YP_865073.1 PFAM: glycosyl transferase, group 1; KEGG: bxe:Bxe_B2250 glycosyltransferase YP_865074.1 KEGG: pgi:PG0113 hypothetical protein YP_865077.1 PFAM: aminotransferase, class I and II; KEGG: oih:OB1391 aminotransferase YP_865078.1 PFAM: AMP-dependent synthetase and ligase; KEGG: reu:Reut_A0866 AMP-dependent synthetase and ligase YP_865079.1 KEGG: mta:Moth_2293 hypothetical protein YP_865082.1 KEGG: bxe:Bxe_A2342 thiolase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: thiolase YP_865083.1 TIGRFAM: acetoacetyl-CoA reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: bxe:Bxe_A2341 acetoacetyl-CoA reductase YP_865084.1 TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: xcb:XC_1820 hypothetical protein YP_865085.1 TIGRFAM: phasin family protein YP_865086.1 TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit; KEGG: syn:slr1829 poly(3-hydroxyalkanoate) synthase component YP_865087.1 TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit; PFAM: alpha/beta hydrolase fold; KEGG: xcb:XC_1959 poly (3-hydroxybutyric acid) synthase YP_865088.1 PFAM: pyridoxal-dependent decarboxylase; KEGG: hsa:51380 cysteine sulfinic acid decarboxylase YP_865090.1 KEGG: nwi:Nwi_2828 hypothetical protein YP_865091.1 KEGG: nwi:Nwi_2827 hypothetical protein YP_865092.1 PFAM: polysaccharide deacetylase; KEGG: noc:Noc_2914 hypothetical protein YP_865093.1 KEGG: eba:ebA4278 hypothetical protein YP_865096.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: hemerythrin HHE cation binding domain protein; KEGG: dar:Daro_1420 hypothetical protein YP_865097.1 PFAM: HpcH/HpaI aldolase; KEGG: tdn:Tmden_1111 HpcH/HpaI aldolase YP_865098.1 KEGG: ecj:JW0783 conserved hypothetical protein YP_865099.1 KEGG: mca:MCA2834 hypothetical protein YP_865100.1 KEGG: eba:ebA2719 molybdenum import ATP-binding protein; TIGRFAM: molybdate ABC transporter ATPase; PFAM: ABC transporter related; TOBE domain protein; SMART: ATPase AAA YP_865101.1 TIGRFAM: molybdate ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rpd:RPD_0964 molybdate ABC transporter permease YP_865103.1 KEGG: wsu:WS0035 hypothetical protein YP_865105.1 PFAM: ferredoxin; KEGG: rpc:RPC_1840 ferredoxin YP_865106.1 PFAM: NifZ family protein; KEGG: eca:ECA2942 nitrogen fixation protein YP_865107.1 TIGRFAM: homocitrate synthase; PFAM: pyruvate carboxyltransferase; KEGG: mca:MCA0254 homocitrate synthase YP_865108.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dar:Daro_1510 4Fe-4S ferredoxin iron-sulfur binding YP_865109.1 PFAM: protein of unknown function DUF269; KEGG: dar:Daro_1508 protein of unknown function DUF269 YP_865110.1 PFAM: dinitrogenase iron-molybdenum cofactor biosynthesis; KEGG: dar:Daro_1506 dinitrogenase iron-molybdenum cofactor biosynthesis YP_865111.1 KEGG: dar:Daro_1505 nitrogenase molybdenum-iron cofactor biosynthesis protein; TIGRFAM: nitrogenase molybdenum-iron cofactor biosynthesis protein NifN; PFAM: oxidoreductase/nitrogenase, component 1 YP_865112.1 KEGG: dar:Daro_1501 nitrogenase MoFe cofactor biosynthesis protein NifE; TIGRFAM: nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: oxidoreductase/nitrogenase, component 1 YP_865113.1 KEGG: pca:Pcar_0881 hypothetical protein YP_865114.1 KEGG: mag:amb1587 hypothetical protein YP_865115.1 PFAM: dinitrogenase iron-molybdenum cofactor biosynthesis; KEGG: dar:Daro_1410 dinitrogenase iron-molybdenum cofactor biosynthesis YP_865116.1 PFAM: NifT/FixU family protein; KEGG: dar:Daro_1412 NifT/FixU YP_865117.1 KEGG: dar:Daro_1413 nitrogenase molybdenum-iron protein beta chain; TIGRFAM: nitrogenase molybdenum-iron protein beta chain; PFAM: oxidoreductase/nitrogenase, component 1 YP_865118.1 KEGG: dar:Daro_1414 nitrogenase molybdenum-iron protein alpha chain:nitrogenase component I, alpha chain; TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase, component 1 YP_865119.1 KEGG: dar:Daro_1415 nitrogenase iron protein; TIGRFAM: nitrogenase iron protein; PFAM: NifH/frxC-family protein YP_865120.1 KEGG: dar:Daro_1416 hypothetical protein YP_865121.1 KEGG: mca:MCA0764 transcriptional regulator NifA; TIGRFAM: Nif-specific regulatory protein; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; SMART: ATPase AAA YP_865122.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; histidine kinase, HAMP region domain protein; KEGG: mag:amb3618 adenylate cyclase 1 YP_865123.1 TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: dinitrogenase iron-molybdenum cofactor biosynthesis; radical SAM domain protein; KEGG: dar:Daro_1454 nitrogenase cofactor biosynthesis protein NifB YP_865124.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dar:Daro_1453 4Fe-4S ferredoxin iron-sulfur binding YP_865125.1 TIGRFAM: nitrogenase-associated protein; PFAM: arsenate reductase and related; KEGG: rpd:RPD_1186 nitrogenase-associated protein YP_865126.1 PFAM: NifQ family protein; KEGG: bxe:Bxe_B1476 nitrogen fixation-related protein(NifQ) YP_865127.1 KEGG: dar:Daro_1447 ADP-ribosylation/crystallin J1; TIGRFAM: ADP-ribosyl-[dinitrogen reductase] hydrolase; PFAM: ADP-ribosylation/crystallin J1 YP_865128.1 PFAM: isochorismatase hydrolase; KEGG: gsu:GSU2290 pyrazinamidase/nicotinamidase YP_865129.1 TIGRFAM: nicotinate phosphoribosyltransferase; PFAM: Quinolinate phosphoribosyl transferase; Nicotinate phosphoribosyltransferase and related; KEGG: sru:SRU_0348 nicotinate phosphoribosyltransferase YP_865130.1 KEGG: dar:Daro_1419 hypothetical protein YP_865132.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: ade:Adeh_4122 GAF sensor hybrid histidine kinase YP_865133.1 KEGG: rba:RB2547 signal peptide prediction YP_865134.1 KEGG: mag:amb1110 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_865135.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mca:MCA0119 acetyltransferase, GNAT family YP_865136.1 SMART: zinc finger, CDGSH-type domain protein; KEGG: vpa:VPA0765 glutamate synthetase YP_865137.1 PFAM: histidinol dehydrogenase; KEGG: rru:Rru_A2771 histidinol dehydrogenase YP_865138.1 TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: pae:PA4450 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_865139.1 PFAM: beta-lactamase; KEGG: eba:ebA2905 hypothetical protein YP_865140.1 PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: pha:PSHAa0856 glutathione-regulated potassium-efflux system protein ( K(+)/H(+) antiporter) YP_865141.1 PFAM: transposase IS66; KEGG: hal:VNG0056H hypothetical protein encoded by ISH10 YP_865143.1 KEGG: nwi:Nwi_1942 bacteriophage-related protein YP_865144.1 PFAM: Resolvase, N-terminal domain; Recombinase; KEGG: nwi:Nwi_1943 resolvase YP_865145.1 KEGG: mag:amb1200 hypothetical protein YP_865147.1 KEGG: sru:SRU_p0014 hypothetical protein YP_865148.1 KEGG: ana:all2661 unknown protein YP_865149.1 KEGG: nwi:Nwi_1961 hypothetical protein YP_865150.1 KEGG: hch:HCH_05689 hypothetical protein YP_865151.1 KEGG: mca:MCA2644 hypothetical protein YP_865152.1 PFAM: helicase; type III restriction enzyme, res subunit; DEAD/DEAH box helicase; SMART: ATPase AAA; DEAD-like helicases-like; KEGG: mag:amb0356 DNA or RNA helicase of superfamily II YP_865153.1 KEGG: rso:RSc3233 hypothetical protein YP_865154.1 KEGG: sfx:S1991 hypothetical bacteriophage protein YP_865155.1 KEGG: rso:RSc3231 hypothetical protein YP_865156.1 PFAM: TOPRIM domain protein; KEGG: wol:WD0609 regulatory protein RepA YP_865157.1 KEGG: mag:amb0359 hypothetical protein YP_865158.1 KEGG: mag:amb0360 hypothetical protein YP_865159.1 KEGG: rso:RS03910 hypothetical protein YP_865160.1 PFAM: peptidase M15A; KEGG: sil:SPO3675 hypothetical protein YP_865161.1 PFAM: histone family protein DNA-binding protein; KEGG: nmu:Nmul_A2068 integration host factor subunit beta YP_865164.1 KEGG: aba:acid345_3187 hypothetical protein YP_865165.1 KEGG: rba:RB8957 hypothetical protein YP_865166.1 PFAM: DNA methylase N-4/N-6 domain protein; ParB domain protein nuclease; KEGG: mag:amb1160 modification methylase DpnIIB YP_865167.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: sdy:SDY_4347 cold shock protein 7.4 YP_865168.1 PFAM: histone family protein DNA-binding protein; KEGG: oih:OB1792 non-specific DNA-binding protein YP_865169.1 KEGG: mca:MCA2656 hypothetical protein YP_865171.1 KEGG: wol:WD0264 hypothetical protein YP_865172.1 KEGG: rfr:Rfer_2987 CcdB-like toxin protein YP_865173.1 PFAM: Post-segregation antitoxin CcdA; KEGG: sde:Sde_3990 acetoacetyl-CoA synthase YP_865174.1 PFAM: phage terminase GpA; KEGG: bhe:BH03350 phage terminase large subunit (GP15) YP_865175.1 KEGG: pae:PA5269 hypothetical protein YP_865176.1 KEGG: mag:amb1170 hypothetical protein YP_865177.1 TIGRFAM: phage portal protein, lambda family; PFAM: phage portal protein, lambda; KEGG: mca:MCA2660 prophage LambdaMc01, portal protein, lambda family YP_865178.1 PFAM: peptidase S49; KEGG: rso:RSc0858 probable bacteriophage-related protein YP_865179.1 KEGG: bxe:Bxe_A3061 phage protein GP19 YP_865180.1 KEGG: wol:WD0274 hypothetical protein YP_865186.1 KEGG: hch:HCH_02903 hypothetical protein YP_865188.1 KEGG: hch:HCH_04219 hypothetical protein YP_865189.1 TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: sao:SAOUHSC_02182 tail length tape measure protein YP_865190.1 KEGG: eba:ebB249 hypothetical protein YP_865191.1 KEGG: sdn:Sden_3241 hypothetical protein YP_865196.1 KEGG: rso:RSc0879 probable transmembrane protein YP_865198.1 KEGG: gka:GKP08 type IIs modification methyltransferase; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase YP_865199.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: cch:Cag_1099 DNA modification methylase-like YP_865200.1 KEGG: bpe:BP1345 hypothetical protein YP_865201.1 KEGG: nar:Saro_2176 hypothetical protein YP_865202.1 KEGG: eci:UTI89_C5091 hypothetical protein YP_865203.1 KEGG: plu:plu4903 hypothetical protein YP_865204.1 PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: bca:BCE2662 hypothetical protein YP_865205.1 PFAM: response regulator receiver; KEGG: pca:Pcar_2629 response regulator receiver domain protein (CheY-like) YP_865206.1 PFAM: sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sye:Syncc9902_1520 type II alternative RNA polymerase sigma factor, sigma-70 family YP_865207.1 PFAM: sigma-54 factor, interaction domain-containing protein; SMART: ATPase AAA; KEGG: pae:PA4726 two-component response regulator CbrB YP_865208.1 PFAM: ATPase AAA, central domain protein; SMART: AAA ATPase; KEGG: tbd:Tbd_1692 ATPase YP_865209.1 KEGG: tbd:Tbd_1693 hypothetical protein YP_865210.1 KEGG: dps:DP0381 hypothetical protein YP_865211.1 KEGG: sme:SMa1784 hypothetical protein YP_865212.1 KEGG: fra:Francci3_0419 integrase YP_865213.1 KEGG: nwi:Nwi_1961 hypothetical protein YP_865214.1 KEGG: hch:HCH_05689 hypothetical protein YP_865215.1 KEGG: hch:HCH_05688 hypothetical protein YP_865216.1 KEGG: hypothetical protein YP_865217.1 PFAM: helicase; type III restriction enzyme, res subunit; DEAD/DEAH box helicase; SMART: DEAD-like helicases-like; KEGG: DNA/RNA helicase YP_865219.1 KEGG: sfx:S1991 hypothetical bacteriophage protein YP_865220.1 KEGG: rso:RSc3231 hypothetical protein YP_865221.1 PFAM: TOPRIM domain protein; KEGG: wol:WD0609 regulatory protein RepA YP_865222.1 KEGG: mag:amb0359 hypothetical protein YP_865223.1 KEGG: mag:amb0360 hypothetical protein YP_865224.1 KEGG: mag:amb0361 hypothetical protein YP_865225.1 TIGRFAM: integration host factor, subunit alpha; PFAM: histone family protein DNA-binding protein; KEGG: ade:Adeh_1969 integration host factor, subunit alpha YP_865226.1 PFAM: endonuclease I; KEGG: pfo:Pfl_1915 deoxyribonuclease I YP_865227.1 PFAM: peptidase M15A; KEGG: sil:SPO3675 hypothetical protein YP_865230.1 KEGG: aba:acid345_3187 hypothetical protein YP_865231.1 PFAM: plasmid stabilization system; KEGG: rru:Rru_A2376 hypothetical protein YP_865232.1 TIGRFAM: addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: rru:Rru_A2377 predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain YP_865233.1 SMART: HNH nuclease; KEGG: pca:Pcar_2805 hypothetical protein YP_865234.1 KEGG: mag:amb1168 hypothetical protein YP_865235.1 PFAM: DNA methylase N-4/N-6 domain protein; ParB domain protein nuclease; KEGG: mag:amb0363 modification methylase DpnIIB YP_865237.1 KEGG: mca:MCA2656 hypothetical protein YP_865239.1 PFAM: phage terminase GpA; KEGG: bhe:BH03350 phage terminase large subunit (GP15) YP_865240.1 KEGG: pae:PA5269 hypothetical protein YP_865241.1 KEGG: mag:amb1170 hypothetical protein YP_865242.1 TIGRFAM: phage portal protein, lambda family; PFAM: phage portal protein, lambda; KEGG: mca:MCA2660 prophage LambdaMc01, portal protein, lambda family YP_865243.1 PFAM: peptidase S49; KEGG: rso:RSc0858 probable bacteriophage-related protein YP_865244.1 KEGG: bxe:Bxe_A3061 phage protein GP19 YP_865245.1 KEGG: wol:WD0274 hypothetical protein YP_865251.1 KEGG: hch:HCH_02903 hypothetical protein YP_865253.1 PFAM: helix-turn-helix domain protein; KEGG: eba:ebD107 phage-like regulator protein YP_865254.1 PFAM: protein of unknown function DUF891; KEGG: eba:ebD106 hypothetical protein, phage-related YP_865255.1 TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: sao:SAOUHSC_02182 tail length tape measure protein YP_865256.1 KEGG: rso:RSc0874 probable transmembrane protein YP_865257.1 KEGG: mca:MCA2672 hypothetical protein YP_865262.1 KEGG: rso:RSc0879 probable transmembrane protein YP_865264.1 PFAM: peptidase M48, Ste24p; KEGG: dde:Dde_2161 peptidase, M48 family YP_865265.1 PFAM: heat shock protein Hsp20; KEGG: gme:Gmet_2986 heat shock protein HSP20 YP_865266.1 KEGG: rpd:RPD_0957 hypothetical protein YP_865269.1 PFAM: UvrD/REP helicase; KEGG: ecs:ECs5264 DNA helicase YP_865270.1 PFAM: helicase; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: ecs:ECs5263 RNA helicase YP_865271.1 KEGG: ecs:ECs5262 hypothetical protein YP_865272.1 PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like; KEGG: ece:Z5899 ATP-dependent helicase YP_865273.1 KEGG: nar:Saro_2176 hypothetical protein YP_865275.1 KEGG: plu:plu4903 hypothetical protein YP_865276.1 PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: bca:BCE2662 hypothetical protein YP_865277.1 PFAM: response regulator receiver; KEGG: pca:Pcar_2629 response regulator receiver domain protein (CheY-like) YP_865279.1 KEGG: bca:BCE0996 hypothetical protein YP_865280.1 PFAM: sigma-54 factor, interaction domain-containing protein; SMART: ATPase AAA; KEGG: xoo:XOO4202 two-component system regulatory protein YP_865281.1 KEGG: vvy:VV0274 hypothetical protein YP_865282.1 PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: gvi:gll0267 probable transcriptional regulator YP_865283.1 KEGG: sme:SMa1784 hypothetical protein YP_865284.1 KEGG: fra:Francci3_0419 integrase YP_865285.1 PFAM: Group II intron, maturase-specific domain protein; KEGG: plt:Plut_1820 RNA-directed DNA polymerase YP_865286.1 PFAM: Integrase, catalytic region; KEGG: pca:Pcar_1381 hypothetical protein YP_865287.1 PFAM: transposase IS3/IS911 family protein; KEGG: pca:Pcar_1382 hypothetical protein YP_865288.1 KEGG: pca:Pcar_2728 transcriptional regulator, fis family YP_865290.1 KEGG: eba:c2A230 transposase (fragment) YP_865293.1 PFAM: transposase IS66; KEGG: mxa:MXAN_4128 transposase, unclassified family YP_865294.1 KEGG: pcu:pc0902 hypothetical protein YP_865295.1 KEGG: tel:tlr1931 transposase YP_865298.1 KEGG: hch:HCH_01990 micrococcal nuclease-like protein YP_865299.1 PFAM: transposase, IS4 family protein; KEGG: dsy:DSY0689 hypothetical protein YP_865301.1 KEGG: dsy:DSY0277 hypothetical protein YP_865302.1 PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: mac:MA3293 hypothetical protein YP_865303.1 KEGG: noc:Noc_1459 peptidase M28 YP_865304.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; cyclic nucleotide-binding; KEGG: gme:Gmet_0773 cyclic nucleotide-binding domain (cNMP-BD) protein YP_865305.1 PFAM: SMC domain protein; ABC transporter; SMART: ATPase AAA; KEGG: gsu:GSU0913 ABC transporter ATP-binding protein YP_865306.1 KEGG: dar:Daro_2734 hypothetical protein YP_865307.1 PFAM: pseudouridine synthase; KEGG: rpc:RPC_0213 pseudouridine synthase YP_865309.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain YP_865310.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: gme:Gmet_1622 CMP/dCMP deaminase, zinc-binding protein YP_865311.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase; KEGG: gsu:GSU1694 hydrolase, haloacid dehalogenase-like family YP_865312.1 PFAM: type IV pilus assembly PilZ; KEGG: gme:Gmet_0191 hypothetical protein YP_865313.1 KEGG: mag:amb0510 N-acetylglutamate synthase; TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; PFAM: arginine biosynthesis protein ArgJ YP_865315.1 PFAM: NUDIX hydrolase; KEGG: mag:amb0509 NTP pyrophosphohydrolase YP_865316.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: wsu:WS0344 GGDEF domain protein YP_865317.1 PFAM: methyltransferase type 11; KEGG: mag:amb1605 SAM-dependent methyltransferase YP_865318.1 KEGG: dar:Daro_0617 phosphoribosyltransferase YP_865319.1 TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: mag:amb1606 glutaredoxin and related protein YP_865320.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: reu:Reut_A1028 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_865321.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: eba:ebA784 hypothetical protein YP_865322.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: plu:plu4658 dTDP-glucose 4,6-dehydratase YP_865323.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: nucleotidyl transferase; KEGG: eba:ebA2277 glucose-1-phosphate thymidylyltransferase YP_865324.1 KEGG: hch:HCH_04968 hypothetical protein YP_865326.1 PFAM: citrate transporter; TrkA-C domain protein; KEGG: pae:PA3839 probable sodium:sulfate symporter YP_865327.1 KEGG: tdn:Tmden_1269 3-deoxy-7-phosphoheptulonate synthase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase, class II YP_865328.1 KEGG: mag:amb4476 UTP:GlnB (protein PII) uridylyltransferase; TIGRFAM: protein-P-II uridylyltransferase; PFAM: amino acid-binding ACT domain protein; DNA polymerase, beta domain protein region; metal-dependent phosphohydrolase, HD sub domain; GlnD PII-uridylyltransferase; SMART: metal-dependent phosphohydrolase, HD region YP_865329.1 functions in MreBCD complex in some organisms YP_865330.1 TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; KEGG: jan:Jann_3646 rod shape-determining protein MreC YP_865331.1 PFAM: Rod shape-determining protein MreD; KEGG: csa:Csal_2238 rod shape-determining protein MreD YP_865332.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: rru:Rru_A0473 peptidoglycan glycosyltransferase YP_865333.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: vch:VC0949 rod shape-determining protein RodA YP_865334.1 TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; KEGG: cya:CYA_1015 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_865335.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: rba:RB6746 methyltransferase YP_865336.1 KEGG: hch:HCH_04839 hypothetical protein YP_865337.1 PFAM: protein of unknown function DUF463, YcjX family protein; KEGG: plu:plu2582 hypothetical protein YP_865338.1 KEGG: son:SO1811 hypothetical protein YP_865339.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine YP_865340.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_865341.1 TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: mfa:Mfla_0102 cobalamin biosynthesis protein CobD YP_865343.1 KEGG: gme:Gmet_0243 glycosyl transferase, family 39 YP_865344.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: ade:Adeh_4293 glycosyl transferase, family 2 YP_865345.1 PFAM: glycosyl transferase, family 2; KEGG: lic:LIC10452 glycosyltransferase YP_865346.1 TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: gme:Gmet_1311 GDP-mannose 4,6-dehydratase YP_865347.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: pcr:Pcryo_1612 Sel1 YP_865348.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: cps:CPS_2411 hypothetical protein YP_865349.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate kinase; HpcH/HpaI aldolase; KEGG: ade:Adeh_4234 pyruvate kinase YP_865350.1 TIGRFAM: methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: syw:SYNW0722 hypothetical protein YP_865351.1 KEGG: tte:TTE1486 phosphopantetheine adenylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain; PFAM: cytidylyltransferase YP_865352.1 KEGG: csa:Csal_2334 tRNA-i(6)A37 modification enzyme MiaB; TIGRFAM: RNA modification enzyme, MiaB family; tRNA-i(6)A37 thiotransferase enzyme MiaB; PFAM: deoxyribonuclease/rho motif-related TRAM; radical SAM protein; protein of unknown function UPF0004-like; SMART: Elongator protein 3/MiaB/NifB YP_865353.1 PFAM: PhoH family protein; KEGG: sme:SMc01114 hypothetical PHOH-like protein YP_865354.1 KEGG: pca:Pcar_1232 HD domain protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; metal-dependent phosphohydrolase, 7TM intracellular region; SMART: metal-dependent phosphohydrolase, HD region YP_865355.1 PFAM: protein of unknown function UPF0054; KEGG: rpa:RPA0446 protein of unknown function UPF0054 YP_865356.1 TIGRFAM: apolipoprotein N-acyltransferase; PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: gme:Gmet_2367 apolipoprotein N-acyltransferase YP_865357.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_865358.1 KEGG: yps:YPTB3916 glycyl-tRNA synthetase subunit beta YP_865359.1 KEGG: mca:MCA1868 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase; HRDC domain protein; DEAD/DEAH box helicase; SMART: DEAD-like helicases-like YP_865360.1 PFAM: protein of unknown function DUF107; KEGG: pfl:PFL_5949 hypothetical protein YP_865361.1 PFAM: band 7 protein; KEGG: ret:RHE_CH03557 membrane protease subunit protein YP_865362.1 KEGG: rru:Rru_A2420 transferase hexapeptide repeat YP_865363.1 PFAM: sporulation domain protein YP_865364.1 TIGRFAM: DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS domain protein; MutS III domain protein; MutS II domain protein; MutS IV domain protein; KEGG: csa:Csal_0621 DNA mismatch repair protein MutS YP_865366.1 PFAM: protein of unknown function DUF323; SMART: hypothetical protein; KEGG: dps:DP2422 hypothetical protein YP_865368.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; FAD dependent oxidoreductase; KEGG: gme:Gmet_2764 dihydrolipoamide dehydrogenase YP_865369.1 PFAM: methyltransferase type 11; KEGG: pmn:PMN2A_0954 hypothetical protein YP_865371.1 PFAM: NAD-glutamate dehydrogenase; KEGG: csa:Csal_1340 NAD-glutamate dehydrogenase YP_865372.1 KEGG: bxe:Bxe_B2645 hypothetical protein YP_865374.1 PFAM: protein of unknown function UPF0270; KEGG: sat:SYN_01320 hypothetical cytosolic protein YP_865375.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase, RNase H domain protein fold; KEGG: cvi:CV1537 probable transcriptional accessory protein YP_865376.1 KEGG: bja:bll0405 hypothetical protein YP_865377.1 KEGG: lic:LIC11862 hypothetical protein YP_865378.1 PFAM: cobalamin B12-binding domain protein; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mka:MK0895 Fe-S oxidoreductase YP_865379.1 PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter C-terminal domain protein; SMART: ATPase AAA; KEGG: mlo:mll5490 peptide ABC transporter ATP-binding protein YP_865380.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rme:Rmet_2144 binding-protein-dependent transport systems inner membrane component YP_865381.1 PFAM: response regulator receiver; Hpt domain protein; KEGG: xac:XAC0494 two-component system sensor protein YP_865382.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: ATPase AAA; KEGG: gsu:GSU0101 ABC transporter ATP-binding/permease YP_865383.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: ATPase AAA; KEGG: gme:Gmet_3423 ABC transporter-related protein YP_865384.1 KEGG: cvi:CV1609 peptidoglycan N-acetylmuramoylhydrolase YP_865385.1 TIGRFAM: lipoprotein A; PFAM: Rare lipoprotein A; sporulation domain protein; KEGG: mag:amb2452 lipoprotein YP_865386.1 PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: pae:PA3999 D-ala-D-ala-carboxypeptidase YP_865387.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: cjr:CJE0320 antioxidant, AhpC/Tsa family YP_865388.1 KEGG: lma:LmjF29.0110 hypothetical protein, conserved YP_865389.1 TIGRFAM: valyl-tRNA synthetase; KEGG: noc:Noc_1091 valyl-tRNA synthetase, class Ia YP_865390.1 KEGG: gsu:GSU1936 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase YP_865391.1 KEGG: gsu:GSU1935 birA biofunctional protein, TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; Helix-turn-helix, type 11 domain protein YP_865392.1 TIGRFAM: transcriptional activator, Baf family; PFAM: Bordetella pertussis Bvg accessory factor; KEGG: mta:Moth_0146 transcriptional acitvator, Baf YP_865393.1 PFAM: sporulation domain protein YP_865394.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: mag:amb3001 methyl-accepting chemotaxis protein YP_865395.1 PFAM: CheB methylesterase; response regulator receiver; KEGG: mag:amb3002 chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain YP_865396.1 KEGG: mag:amb3003 methylase of chemotaxis methyl-accepting protein; PFAM: MCP methyltransferase, CheR-type; TPR repeat-containing protein; hypothetical protein; SMART: hypothetical protein YP_865397.1 PFAM: response regulator receiver; CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Hpt domain protein; KEGG: mag:amb3004 Gliding motility regulatory protein YP_865398.1 PFAM: response regulator receiver; KEGG: mag:amb3005 response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain YP_865399.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: mag:amb3006 response regulator containing a CheY-like receiver domain and a GGDEF domain YP_865400.1 PFAM: CheW domain protein; KEGG: mag:amb3007 chemotaxis signal transduction protein YP_865402.1 KEGG: lpp:lpp2889 hypothetical protein YP_865403.1 PFAM: Di-haem cytochrome C peroxidase; KEGG: pol:Bpro_4821 cytochrome-c peroxidase YP_865404.1 KEGG: dvu:DVU0721 sensory box histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_865406.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ade:Adeh_4009 two component transcriptional regulator, winged helix family YP_865407.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; hypothetical protein; PAS fold domain protein; KEGG: gme:Gmet_2694 PAS/PAC sensor signal transduction histidine kinase YP_865408.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: bbr:BB0876 polysaccharide biosynthesis protein YP_865409.1 PFAM: oxidoreductase domain protein; oxidoreductase, C-terminal domain; KEGG: aba:acid345_1079 oxidoreductase YP_865410.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; molybdopterin biosynthesis MoaE; KEGG: reu:Reut_A1989 molybdopterin biosynthesis MoaE YP_865411.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: mca:MCA1567 molybdopterin biosynthesis MoeA protein YP_865412.1 TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: mta:Moth_2134 molybdenum cofactor biosynthesis protein C YP_865413.1 KEGG: tcx:Tcr_0158 molybdenum cofactor synthesis-like; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: radical SAM protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB YP_865414.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: mfa:Mfla_0085 UBA/ThiF-type NAD/FAD binding fold YP_865415.1 PFAM: helix-turn-helix domain protein; peptidase S24, S26A and S26B; KEGG: psb:Psyr_2812 helix-turn-helix motif:peptidase S24, S26A and S26B YP_865416.1 KEGG: cps:CPS_0989 hypothetical protein YP_865417.1 PFAM: regulatory protein, ArsR; KEGG: pae:PA2277 ArsR protein YP_865419.1 PFAM: transposase IS66; KEGG: hal:VNG0056H hypothetical protein encoded by ISH10 YP_865421.1 KEGG: dge:Dgeo_1337 5,10-methylenetetrahydrofolate reductase-related protein YP_865422.1 KEGG: mag:amb3576 hypothetical protein YP_865423.1 TIGRFAM: siroheme synthase; KEGG: plu:plu0708 sirohaem synthase YP_865424.1 KEGG: mag:amb2980 hypothetical 918 kDa protein Y4LL; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_865425.1 PFAM: Hpt domain protein; KEGG: sat:SYN_00227 hypothetical cytosolic protein YP_865426.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: eba:ebA4468 DNA-binding response regulator OmpR YP_865427.1 PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: sil:SPO2992 D-tyrosyl-tRNA(Tyr) deacylase YP_865428.1 PFAM: hydantoinase/oxoprolinase; hydantoinase B/oxoprolinase; hydantoinaseoxoprolinase domain protein; KEGG: tel:tlr2171 hydantoinase / oxoprolinase YP_865429.1 amylomaltase; acts to release glucose from maltodextrins YP_865431.1 KEGG: pca:Pcar_1372 methyl-accepting chemotaxis sensory transducer YP_865432.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose YP_865433.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain YP_865434.1 KEGG: sde:Sde_3357 integral membrane protein YP_865435.1 KEGG: rru:Rru_A2244 glycogen/starch/alpha-glucan phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylases; PFAM: glycosyl transferase, family 35 YP_865436.1 TIGRFAM: glycogen/starch synthases, ADP-glucose type; PFAM: glycosyl transferase, group 1; Starch synthase catalytic domain protein; KEGG: rru:Rru_A2245 glycogen/starch synthases, ADP-glucose type YP_865437.1 KEGG: rru:Rru_A2246 glucose-1-phosphate adenylyltransferase; TIGRFAM: glucose-1-phosphate adenylyltransferase; PFAM: nucleotidyl transferase YP_865438.1 PFAM: adenylosuccinate synthetase; KEGG: pae:PA4938 adenylosuccinate synthetase YP_865439.1 PFAM: rhodanese; KEGG: tbd:Tbd_0008 rhodanese-like protein YP_865440.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: dps:DP2258 similar to methyl-accepting chemotaxis protein YP_865441.1 PFAM: transposase, IS4 family protein; KEGG: gka:GK3116 transposase YP_865442.1 KEGG: dsy:DSY0277 hypothetical protein YP_865443.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; response regulator receiver; KEGG: bms:BRA0610 response regulator/GGDEF domain protein YP_865445.1 PFAM: CheC domain protein; type IV pilus assembly PilZ; KEGG: dps:DP2650 chemotaxis protein CheX YP_865446.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: tbd:Tbd_0079 Crp/Fnr family transcriptional regulator YP_865447.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: nmu:Nmul_A0104 Sel1-like repeat YP_865448.1 KEGG: lpp:lpp1174 hypothetical protein YP_865449.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: tko:TK0524 rubredoxin YP_865450.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; KEGG: mca:MCA1165 NAD-dependent epimerase/dehydratase family protein YP_865451.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: cvi:CV0473 probable sensor histidine kinase protein YP_865452.1 PFAM: response regulator receiver; KEGG: dar:Daro_0110 response regulator receiver YP_865453.1 PFAM: GAF domain protein; SMART: metal-dependent phosphohydrolase, HD region; KEGG: mag:amb3625 methyl-accepting chemotaxis protein YP_865454.1 TIGRFAM: phosphate ABC transporter inner membrane subunit PstC; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rru:Rru_A0599 phosphate ABC transporter permease PstC YP_865455.1 TIGRFAM: phosphate ABC transporter inner membrane subunit PstA; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: mca:MCA1073 phosphate ABC transporter permease YP_865456.1 KEGG: mag:amb1372 ABC-type phosphate transport system; TIGRFAM: phosphate ABC transporter ATPase; PFAM: ABC transporter related; SMART: ATPase AAA YP_865457.1 TIGRFAM: phosphate transporter regulatory protein PhoU; PFAM: PhoU family protein; KEGG: rru:Rru_A0602 phosphate uptake regulator, PhoU YP_865458.1 SMART: rhodanese; KEGG: tbd:Tbd_1650 rhodanese-like protein YP_865459.1 KEGG: mca:MCA0949 phosphate binding protein YP_865460.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: lpf:lpl2737 GTP-binding protein TypA YP_865461.1 PFAM: glycosyl transferase, group 1; KEGG: plu:plu4852 lipopolysaccharide core biosynthesis protein RfaG (glucosyltransferase I) YP_865462.1 PFAM: phosphoglycerate mutase; KEGG: sma:SAV7051 hypothetical protein YP_865463.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: sth:STH1238 hypothetical protein YP_865464.1 PFAM: glycosyl transferase, family 2; KEGG: dar:Daro_3929 glycosyl transferase, family 2 YP_865465.1 TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase, family 9; KEGG: pfl:PFL_0512 lipopolysaccharide heptosyltransferase I YP_865466.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: ade:Adeh_4171 lipid A biosynthesis acyltransferase YP_865467.1 TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase, family 9; KEGG: mfa:Mfla_0768 lipopolysaccharide heptosyltransferase II YP_865468.1 TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; KEGG: pca:Pcar_0024 ADP-L-glycero-D-mannoheptose-6-epimerase YP_865469.1 TIGRFAM: cytidyltransferase-related domain; rfaE bifunctional protein; PFAM: cytidylyltransferase; PfkB domain protein; KEGG: mfa:Mfla_0769 RfaE bifunctional protein, domain I YP_865470.1 TIGRFAM: histidinol-phosphate phosphatase; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bur:Bcep18194_A6030 hypothetical protein YP_865471.1 KEGG: gsu:GSU0673 hypothetical protein YP_865472.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_865473.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_865474.1 TIGRFAM: glycine cleavage system protein T; PFAM: glycine cleavage T protein (aminomethyl transferase); glycine cleavage T-protein, C-terminal barrel; KEGG: sgl:SG2002 aminomethyltransferase YP_865475.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein YP_865476.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein YP_865477.1 PFAM: enolase; KEGG: gka:GK3054 phosphopyruvate hydratase YP_865478.1 KEGG: dsy:DSY0277 hypothetical protein YP_865479.1 PFAM: regulatory protein, MerR; KEGG: nfa:nfa11590 transcriptional regulator YP_865480.1 TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: hch:HCH_02138 periplasmic serine protease (ClpP class) YP_865481.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate YP_865482.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dvu:DVU3079 glyoxalase family protein YP_865484.1 PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: cjr:CJE1366 sodium/hydrogen exchanger family protein YP_865486.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: cbu:CBU_1131 RNA methyltransferase, TrmH family, group 1 YP_865487.1 PFAM: protein of unknown function DUF558; KEGG: pca:Pcar_1549 hypothetical protein YP_865488.1 TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: pub:SAR11_0008 probable integral membrane proteinase YP_865489.1 TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: dde:Dde_2947 HflC protein YP_865490.1 KEGG: pca:Pcar_1896 hypothetical protein YP_865491.1 PFAM: protein of unknown function DUF177; KEGG: gme:Gmet_1596 protein of unknown function DUF177 YP_865492.1 KEGG: dps:DPPB61 hypothetical protein YP_865493.1 KEGG: dps:DPPB62 hypothetical protein YP_865495.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: dsy:DSY4014 anaerobic dehydrogenase YP_865496.1 PFAM: aminotransferase, class V; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: dsy:DSY4014 anaerobic dehydrogenase YP_865497.1 KEGG: noc:Noc_2028 hypothetical protein YP_865498.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; histidine kinase, HAMP region domain protein; KEGG: lil:LA3234 adenylate cyclase YP_865499.1 PFAM: extracellular solute-binding protein, family 1; KEGG: dvu:DVU2477 phosphate ABC transporter periplasmic phosphate-binding protein PstS YP_865500.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; hemerythrin HHE cation binding domain protein; KEGG: mag:amb3690 methyl-accepting chemotaxis protein YP_865501.1 TIGRFAM: 6-phosphogluconolactonase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: vfi:VFA0469 6-phosphogluconolactonase YP_865502.1 PFAM: NapC/NirT cytochrome C domain protein; KEGG: dar:Daro_3513 NapC/NirT cytochrome C, N-terminal YP_865503.1 PFAM: nitrate reductase cytochrome C subunit (NapB); KEGG: ppr:PBPRA0854 periplasmic nitrate reductase,cytochrome c-type protein YP_865504.1 TIGRFAM: ferredoxin-type protein, NapH/MauN family; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dar:Daro_3838 ferredoxin-type protein, NapH/MauN family YP_865505.1 TIGRFAM: MauM/NapG family ferredoxin-type protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dar:Daro_3839 MauM/NapG ferredoxin-type protein YP_865506.1 periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC YP_865507.1 PFAM: NapD family protein; KEGG: dar:Daro_3516 NapD YP_865508.1 TIGRFAM: ferredoxin-type protein NapF; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: eca:ECA1898 ferredoxin-type protein YP_865509.1 PFAM: TonB-dependent receptor, plug; KEGG: noc:Noc_1269 TonB-dependent receptor YP_865510.1 KEGG: dsy:DSY3991 hypothetical protein YP_865511.1 PFAM: TonB-dependent receptor; KEGG: hch:HCH_02561 outer membrane receptor for ferrienterochelin and colicins YP_865512.1 KEGG: hch:HCH_00860 hypothetical protein YP_865513.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: syn:slr2098 two-component hybrid histidine kinase YP_865514.1 KEGG: sat:SYN_00747 hypothetical protein YP_865516.1 PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: neu:NE2034 hypothetical protein YP_865518.1 KEGG: son:SO2629 isocitrate dehydrogenase, NADP-dependent; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate dehydrogenase NADP-dependent, monomeric type YP_865519.1 PFAM: helicase-associated; KEGG: cmu:TC0602 helicase YP_865520.1 PFAM: class II aldolase/adducin family protein; NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: yps:YPTB1684 short chain dehydrogenase YP_865521.1 PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: cch:Cag_1641 hypothetical protein YP_865522.1 KEGG: dde:Dde_2398 hypothetical protein YP_865523.1 KEGG: csa:Csal_2511 hypothetical protein YP_865524.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: mca:MCA1537 twitching motility protein PilT YP_865525.1 KEGG: gox:GOX1522 RecA protein; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: ATPase AAA YP_865526.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_865527.1 PFAM: tripartite ATP-independent periplasmic transporter DctQ component; KEGG: ppr:PBPRA1403 hypothetical permease YP_865528.1 TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transporter permease DctM subunit; KEGG: ppr:PBPRA1404 hypothetical permease of C4 dicarboxylatetransporter YP_865530.1 PFAM: cell divisionFtsK/SpoIIIE; SMART: ATPase AAA; KEGG: jan:Jann_0428 cell divisionFtsK/SpoIIIE YP_865531.1 PFAM: beta-lactamase; RNA-metabolising metallo-beta-lactamase; KEGG: gme:Gmet_0366 hypothetical protein YP_865532.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: bme:BMEI1083 sec-independent protein translocase protein TatC YP_865533.1 TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: ade:Adeh_0060 sec-independent translocation protein MttA/Hcf106 YP_865534.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: sat:SYN_00926 sec-independent protein translocase protein YP_865535.1 PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: mag:amb4203 cytochrome C biogenesis protein CycH YP_865536.1 KEGG: pca:Pcar_1864 formamidopyrimidine DNA glycosylase; TIGRFAM: formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycolase; zinc finger, Fpg domain protein YP_865537.1 PFAM: type IV pilus assembly PilZ YP_865538.1 PFAM: protein of unknown function DUF399; SMART: PDZ/DHR/GLGF domain protein; KEGG: nmu:Nmul_A2382 PDZ/DHR/GLGF YP_865539.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: lmo:lmo2565 conserved hypothetical protein YP_865540.1 KEGG: pfl:PFL_2652 hypothetical protein YP_865541.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_865542.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; hypothetical protein; KEGG: rpc:RPC_0440 4Fe-4S ferredoxin iron-sulfur binding YP_865544.1 TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: rpa:RPA0343 endonuclease III DNA-(apurinic or apyrimidinic site) lyase YP_865545.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: mag:amb3818 anaerobic dehydrogenase YP_865546.1 PFAM: glycoside hydrolase, family 3 domain protein; KEGG: rpa:RPA2852 sugar hydrolase YP_865547.1 PFAM: protein of unknown function DUF971; KEGG: noc:Noc_2342 protein of unknown function DUF971 YP_865548.1 PFAM: cobalamin B12-binding domain protein; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dvu:DVU3016 B12 binding domain protein/radical SAM protein YP_865549.1 KEGG: afm:Afu1g01020 hypothetical protein YP_865550.1 PFAM: glycosyl transferase, group 1; KEGG: neu:NE2092 glycosyl transferase group 1:TPR repeat YP_865551.1 PFAM: hypothetical protein; Tetratricopeptide TPR_4; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: gsu:GSU2601 TPR domain/SEC-C motif domain protein YP_865552.1 KEGG: dme:CG18412-PA CG18412 gene product from transcript CG18412-RA YP_865553.1 TIGRFAM: sulfate transporter; PFAM: sulfate transporter/antisigma-factor antagonist STAS; xanthine/uracil/vitamin C permease; sulfate transporter; KEGG: tbd:Tbd_2609 sulfate anion transporter YP_865554.1 KEGG: pfo:Pfl_4979 peptidase S16, lon-like YP_865555.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; HDOD; SMART: metal-dependent phosphohydrolase, HD region; KEGG: rfr:Rfer_0891 metal dependent phosphohydrolase YP_865556.1 PFAM: helicase; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: mag:amb1428 superfamily II DNA and RNA helicase YP_865557.1 PFAM: Cache, type 2 domain protein; KEGG: gsu:GSU1876 hypothetical protein YP_865558.1 TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: dra:DR2366 50S ribosomal protein L32 YP_865559.1 TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein; KEGG: noc:Noc_1668 fatty acid synthesis PlsX protein YP_865560.1 KEGG: tbd:Tbd_1551 beta-ketoacyl-acyl carrier protein synthase III (FabH); TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YP_865561.1 PFAM: lytic transglycosylase, catalytic; SMART: extracellular solute-binding protein, family 3; KEGG: sde:Sde_1477 extracellular solute-binding protein, family 3 YP_865562.1 KEGG: tbd:Tbd_2174 hypothetical protein YP_865563.1 PFAM: hemerythrin HHE cation binding domain protein; KEGG: wsu:WS1190 hypothetical protein YP_865564.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bbr:BB1960 hypothetical protein YP_865565.1 PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: noc:Noc_1382 heat shock protein DnaJ-like YP_865566.1 KEGG: ecs:ECs1492 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; DEAD/DEAH box helicase; SMART: DEAD-like helicases-like YP_865567.1 KEGG: mag:amb3721 hypothetical protein YP_865568.1 KEGG: sat:SYN_02093 hypothetical cytosolic protein YP_865569.1 KEGG: sat:SYN_00226 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_865570.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: mca:MCA2592 hypothetical protein YP_865571.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rfr:Rfer_3626 diguanylate cyclase with PAS/PAC sensor YP_865572.1 PFAM: beta-lactamase; KEGG: sil:SPO3168 hydroxyacylglutathione hydrolase YP_865573.1 PFAM: methyltransferase type 11; KEGG: rpc:RPC_0509 methyltransferase type 11 YP_865574.1 TIGRFAM: tyrosine recombinase XerD; PFAM: phage integrase family protein; phage integrase; KEGG: noc:Noc_2255 tyrosine recombinase XerD YP_865575.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: lpp:lpp2921 pteridine reductase YP_865576.1 KEGG: dps:DP2833 related to sodium/calcium exchange proteins (partial length) YP_865578.1 KEGG: rno:499168 similar to protein tyrosine phosphatase, receptor type, F (predicted) YP_865580.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: ATPase AAA; KEGG: rme:Rmet_5349 sigma-54 factor, interaction region YP_865581.1 PFAM: beta-lactamase; KEGG: neu:NE2342 metallo-beta-lactamase superfamily YP_865584.1 PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: cvi:CV1614 outer membrane lipoproteins carrier protein YP_865585.1 nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription YP_865586.1 KEGG: pca:Pcar_0034 MiaB-like tRNA modifying enzyme YliG; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme YliG; PFAM: radical SAM protein; protein of unknown function UPF0004-like; SMART: Elongator protein 3/MiaB/NifB YP_865587.1 PFAM: magnesium chelatase, ChlI subunit; ATPase AAA, central domain protein; SMART: ATPase AAA; KEGG: mag:amb3482 ATPase related to the helicase subunit of the Holliday junction resolvase YP_865588.1 TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: mca:MCA1973 CrcB protein domain protein YP_865589.1 PFAM: phage integrase family protein; KEGG: plt:Plut_1883 site-specific recombinase XerD-like YP_865590.1 PFAM: protein of unknown function DUF323; KEGG: mac:MA0649 hypothetical protein YP_865593.1 TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: rru:Rru_A2497 peptide chain release factor 3 YP_865594.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: eba:ebA4399 predicted peroxiredoxin YP_865595.1 PFAM: stress protein; KEGG: yps:YPTB0357 tellurium resistance protein YP_865596.1 PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: mca:MCA2048 oxidoreductase, Gfo/Idh/MocA family YP_865598.1 KEGG: dar:Daro_0141 nitroreductase; TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase YP_865600.1 KEGG: cfa:479965 similar to collagen, type XXIV, alpha 1 YP_865602.1 PFAM: peptidase M15A; KEGG: dde:Dde_0939 hypothetical protein YP_865605.1 PFAM: protein of unknown function DUF264; KEGG: tde:TDE1157 phage terminase, large subunit YP_865608.1 KEGG: mlo:mll3781 hypothetical protein YP_865609.1 molecular chaperone YP_865610.1 PFAM: protein of unknown function DUF423; KEGG: neu:NE1173 hypothetical protein YP_865611.1 KEGG: eli:ELI_14495 hypothetical protein YP_865612.1 TIGRFAM: anion transporter; PFAM: sodium/sulfate symporter; citrate transporter; KEGG: sth:STH127 sodium-dependent transporter YP_865613.1 PFAM: UspA domain protein; KEGG: afu:AF1612 cationic amino acid transporter (cat-1) YP_865614.1 catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA YP_865615.1 KEGG: mag:amb3955 exopolyphosphatase-related protein YP_865616.1 PFAM: ferrochelatase; KEGG: eca:ECA1181 ferrochelatase YP_865617.1 KEGG: rpc:RPC_2066 MRP ATP/GTP-binding protein YP_865618.1 TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: cobyrinic acid a,c-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: mag:amb3622 cobyrinic acid a,c-diamide synthase YP_865619.1 PFAM: DsrE family protein; KEGG: tbd:Tbd_2483 DsrE protein YP_865620.1 PFAM: DsrE family protein; KEGG: cch:Cag_1951 DsrF protein YP_865621.1 PFAM: DsrH family protein; KEGG: cch:Cag_1950 DsrH protein YP_865622.1 KEGG: tbd:Tbd_2476 hypothetical protein YP_865623.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mag:amb3377 Fe-S-cluster-containing hydrogenase components 1 YP_865624.1 PFAM: polysulphide reductase, NrfD; KEGG: tbd:Tbd_2474 molybdopterin oxidoreductase, membrane subunit YP_865625.1 KEGG: cvi:CV1033 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_865626.1 PFAM: peptidase U32; KEGG: son:SO1252 peptidase, U32 family YP_865627.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: bxe:Bxe_A0190 hypothetical protein YP_865630.1 KEGG: ret:RHE_CH01097 hypothetical protein YP_865632.1 KEGG: ret:RHE_CH01099 hypothetical protein YP_865633.1 KEGG: ret:RHE_CH01100 hypothetical protein YP_865634.1 KEGG: mlo:mll0452 hypothetical protein YP_865635.1 KEGG: gp68 YP_865636.1 KEGG: sat:SYN_02283 hypothetical cytosolic protein YP_865637.1 KEGG: nar:Saro_3000 hypothetical protein YP_865638.1 KEGG: bur:Bcep18194_C7374 YadA/haemagluttinin like protein YP_865640.1 KEGG: dar:Daro_0347 PAS; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; stage II sporulation E family protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; protein phosphatase 2C domain protein YP_865641.1 PFAM: sulfotransferase; SMART: Tetratricopeptide domain protein; KEGG: mlo:mll2645 hypothetical protein YP_865642.1 PFAM: citrate transporter; KEGG: dps:DP1441 similar to sodium-dependent transporter YP_865643.1 TIGRFAM: ferrous iron transporter B; small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Ferrous iron transporter B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; Miro domain protein; KEGG: mag:amb1024 Fe2+ transporter protein B YP_865644.1 PFAM: FeoA family protein; KEGG: mma:MM2578 ferrous iron transporter A YP_865645.1 TIGRFAM: molybdate transport repressor, ModE; PFAM: regulatory protein, LysR; TOBE domain protein; KEGG: mag:amb2949 molybdenum-pterin binding protein MopA YP_865646.1 TIGRFAM: molybdenum ABC transporter periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: bja:blr6951 molybdenum ABC transporter Molybdate-binding protein YP_865647.1 KEGG: mag:amb3301 response regulator containing a CheY-like receiver domain and a GGDEF domain; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: extracellular solute-binding protein, family 3 YP_865648.1 PFAM: sulfate transporter/antisigma-factor antagonist STAS; xanthine/uracil/vitamin C permease; sulfate transporter; KEGG: rru:Rru_A0164 sulfate transporter/antisigma-factor antagonist YP_865649.1 PFAM: cyclic nucleotide-binding; beta-lactamase domain protein; KEGG: mag:amb3095 hypothetical protein YP_865650.1 KEGG: sil:SPO0443 hypothetical protein YP_865651.1 PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; KEGG: rba:RB13094 conserved hypothetical protein- cobalamin synthesis protein CobW YP_865652.1 KEGG: rru:Rru_A3473 DNA-directed DNA polymerase; TIGRFAM: DNA polymerase III subunits gamma and tau; SMART: ATPase AAA YP_865653.1 PFAM: conserved hypothetical protein 103; KEGG: vfi:VF1686 hypothetical protein YP_865654.1 KEGG: csa:Csal_1460 recombination protein RecR; TIGRFAM: recombination protein RecR; PFAM: RecR protein; TOPRIM domain protein; SMART: Toprim sub domain protein YP_865655.1 PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: pmt:PMT0541 oxidoreductase, Fe-S subunit YP_865656.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; thiamine pyrophosphate enzyme domain protein TPP-binding; KEGG: rpb:RPB_0851 pyruvate flavodoxin/ferredoxin oxidoreductase YP_865659.1 PFAM: ferredoxin; KEGG: gme:Gmet_2912 ferredoxin YP_865660.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: gme:Gmet_2911 fumarate reductase/succinate dehydrogenase flavoprotein-like YP_865661.1 KEGG: rru:Rru_A1211 succinyl-CoA synthetase, beta subunit; TIGRFAM: succinyl-CoA synthetase subunit beta; PFAM: ATP-citrate lyase/succinyl-CoA ligase; ATP-grasp domain protein YP_865662.1 TIGRFAM: succinyl-CoA synthetase, subunit alpha; PFAM: CoA-binding protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: bba:Bd3811 succinyl-CoA synthetase alpha chain YP_865663.1 PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: btk:BT9727_3515 pyruvate ferredoxin oxidoreductase, subunit alpha YP_865664.1 TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, subunit beta; PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; KEGG: pai:PAE1558 2-oxoacid ferredoxin oxidoreductase beta subunit YP_865665.1 PFAM: pentapeptide repeat protein; KEGG: gvi:gll2892 hypothetical protein YP_865667.1 KEGG: ret:RHE_CH01696 adenylate kinase (ATP-AMP transphosphorylase) protein; TIGRFAM: adenylate kinases; PFAM: adenylate kinase; adenylate kinase, lid domain protein YP_865668.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient YP_865669.1 PFAM: aminotransferase, class I and II; KEGG: noc:Noc_2455 aminotransferase, class I and II YP_865670.1 PFAM: homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase, NAD-binding; KEGG: nmu:Nmul_A1551 homoserine dehydrogenase YP_865671.1 KEGG: cvi:CV2476 probable signal peptide protein YP_865672.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: mag:amb3730 single-stranded DNA-specific exonuclease YP_865673.1 PFAM: transposase, IS4 family protein; KEGG: gka:GK3116 transposase YP_865674.1 KEGG: bpm:BURPS1710b_1114 ATP-dependent Clp protease ATP-binding subunit ClpA; TIGRFAM: ATP-dependent Clp protease ATP-binding subunit clpA; PFAM: ATPase AAA, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: ATPase AAA YP_865675.1 PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: bbr:BB2017 ATP-dependent Clp protease adaptor protein ClpS YP_865677.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: pae:PA4763 DNA repair protein RecN YP_865678.1 PFAM: ATP-NAD/AcoX kinase; KEGG: gsu:GSU2065 ATP-NAD kinase YP_865679.1 PFAM: protein of unknown function DUF815; KEGG: gme:Gmet_1239 protein of unknown function DUF815 YP_865680.1 PFAM: protein of unknown function DUF198; KEGG: noc:Noc_2039 protein of unknown function DUF198 YP_865681.1 TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S); anticodon-binding domain protein; YbaK/prolyl-tRNA synthetase associated region; KEGG: pca:Pcar_0682 prolyl-tRNA synthetase YP_865682.1 KEGG: pca:Pcar_0567 chemotaxis protein CheX YP_865683.1 KEGG: pca:Pcar_0567 chemotaxis protein CheX YP_865684.1 KEGG: nmu:Nmul_A1743 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase YP_865685.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response YP_865686.1 PFAM: Positive regulator of sigma(E), RseC/MucC; KEGG: mca:MCA1468 sigma factor regulator MucC YP_865687.1 TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: mag:amb3492 trypsin-like serine protease YP_865689.1 TIGRFAM: ribosomal protein S21; KEGG: sme:SMc03934 30S ribosomal protein S21 YP_865690.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: nar:Saro_2318 ribonuclease, Rne/Rng family YP_865691.1 KEGG: mca:MCA1479 ribosomal large subunit pseudouridine synthase C; TIGRFAM: pseudouridine synthase; PFAM: RNA-binding S4 domain protein; pseudouridine synthase YP_865692.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: eli:ELI_01340 hydrolase, haloacid dehalogenase-like family protein YP_865693.1 TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: aconitate hydratase domain protein; KEGG: tbd:Tbd_1922 3-isopropylmalate dehydratase large subunit YP_865694.1 KEGG: mfa:Mfla_1704 3-isopropylmalate dehydratase, small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein YP_865695.1 KEGG: csa:Csal_2451 3-isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase YP_865696.1 KEGG: mag:amb0587 aspartate-semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: semialdehyde dehydrogenase, NAD - binding; semialdehyde dehydrogenase, dimerisation region YP_865697.1 KEGG: bpe:BP1247 translation initiation factor IF-2 YP_865699.1 PFAM: protein of unknown function DUF111; KEGG: gme:Gmet_0194 hypothetical protein YP_865700.1 PFAM: NUDIX hydrolase; KEGG: plt:Plut_0707 NUDIX/MutT family protein YP_865701.1 KEGG: noc:Noc_2990 hypothetical protein YP_865702.1 PFAM: sulfate transporter/antisigma-factor antagonist STAS YP_865703.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: dps:DP1898 similar to methyl-accepting chemotaxis protein (TlpB) YP_865704.1 PFAM: transposase IS66; KEGG: ppu:PP3985 ISPpu13, transposase Orf2 YP_865705.1 PFAM: IS66 Orf2 family protein; KEGG: rme:Rmet_1275 IS66 Orf2 like YP_865707.1 PFAM: GCN5-related N-acetyltransferase; acetyl-CoA hydrolase/transferase; KEGG: cps:CPS_1656 4-hydroxybutyrate coenzyme A transferase, /acetyltransferase, GNAT family YP_865708.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: extracellular solute-binding protein, family 3; KEGG: hch:HCH_00309 signal transduction histidine kinase YP_865709.1 KEGG: mfa:Mfla_0802 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_865710.1 KEGG: dps:DP1926 similar to two-component system sensory/regulatory protein (Ntr family); TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_865711.1 PFAM: permease; KEGG: dvu:DVU3386 permease YP_865713.1 KEGG: mag:amb3543 DMSO reductase anchor subunit YP_865714.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mag:amb3542 Fe-S-cluster-containing hydrogenase components 1 YP_865715.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: mag:amb3541 anaerobic dehydrogenase YP_865716.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: gsu:GSU2601 TPR domain/SEC-C motif domain protein YP_865717.1 PFAM: cyclic nucleotide-binding; KEGG: aor:AO090003000534 cAMP-dependent protein kinase types I and II, regulatory subunit YP_865719.1 PFAM: response regulator receiver; CheW domain protein; KEGG: ilo:IL1149 chemotaxis protein CheV YP_865720.1 KEGG: dsy:DSY1674 hypothetical protein YP_865721.1 PFAM: protein of unknown function DUF123; KEGG: mca:MCA2572 hypothetical protein YP_865723.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bbr:BB2382 probable ABC transporter ATP-binding protein YP_865724.1 PFAM: molybdopterin binding domain; KEGG: mfa:Mfla_0357 molybdopterin binding domain YP_865725.1 PFAM: Thrombospondin type 3 repeat; OmpA/MotB domain protein; KEGG: noc:Noc_2532 OmpA/MotB YP_865727.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: son:SO2366 response regulator YP_865729.1 KEGG: pae:PA0880 probable ring-cleaving dioxygenase YP_865730.1 catalyzes the reduction of hydroxylamine to ammonia and water YP_865731.1 PFAM: acriflavin resistance protein; KEGG: tbd:Tbd_2397 acriflavin resistance protein YP_865732.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: son:SO3102 AcrA/AcrE family protein YP_865733.1 KEGG: tcx:Tcr_1221 phosphonate-binding periplasmic protein YP_865734.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; hypothetical protein; KEGG: dde:Dde_0370 multi-sensor hybrid histidine kinase YP_865735.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; histidine kinase, HAMP region domain protein; KEGG: hch:HCH_04487 adenylate cyclase, family 3 YP_865736.1 KEGG: pae:PA5025 O-acetylhomoserine (thiol)-lyase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes YP_865737.1 PFAM: protein of unknown function DUF192; KEGG: mag:amb0899 hypothetical protein YP_865738.1 PFAM: response regulator receiver; KEGG: ccr:CC2324 sensor histidine kinase/response regulator YP_865739.1 KEGG: ppr:PBPRA1595 hypothetical protein YP_865740.1 PFAM: protein of unknown function DUF124; KEGG: sdn:Sden_2160 protein of unknown function DUF124 YP_865741.1 KEGG: mca:MCA1608 hypothetical protein YP_865742.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: tcr:414243.20 hypothetical protein Pfam: AflR PROSITE: ALA_RICH PRO_RICH YP_865743.1 KEGG: cvi:CV1033 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_865744.1 PFAM: CheW domain protein; KEGG: sth:STH1535 chemotaxis signal transduction protein YP_865745.1 PFAM: MCP methyltransferase, CheR-type; methyltransferase type 12; KEGG: ade:Adeh_1196 MCP methyltransferase, CheR-type YP_865746.1 PFAM: CheW domain protein; KEGG: ppu:PP4332 purine-binding chemotaxis protein CheW YP_865747.1 PFAM: chemotaxis sensory transducer; SMART: histidine kinase, HAMP region domain protein; KEGG: gme:Gmet_2709 methyl-accepting chemotaxis sensory transducer YP_865748.1 PFAM: response regulator receiver; CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Hpt domain protein; KEGG: nmu:Nmul_A0333 CheA signal transduction histidine kinase YP_865749.1 PFAM: CheB methylesterase; response regulator receiver; KEGG: gme:Gmet_2711 response regulator receiver (CheY-like) modulated CheB methylesterase YP_865751.1 TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC, N-terminal domain; zinc finger, HypF domain protein; KEGG: nmu:Nmul_A1668 (NiFe) hydrogenase maturation protein HypF YP_865752.1 KEGG: mfa:Mfla_0340 dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase YP_865753.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain; KEGG: vpa:VP1953 translation factor YP_865754.1 PFAM: ribosomal protein S2; KEGG: pca:Pcar_1921 30S ribosomal protein S2 YP_865755.1 TIGRFAM: translation elongation factor Ts; PFAM: ubiquitin-associated- domain-containing protein; elongation factor Ts; KEGG: mag:amb2497 translation elongation factor Ts YP_865756.1 TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: fnu:FN1622 uridylate kinase YP_865757.1 PFAM: ribosome recycling factor; KEGG: sme:SMc02098 probable ribosome recycling factor (ribosome releasing factor) protein YP_865758.1 KEGG: atc:AGR_C_2550 probable di-trans,poly-cis-decaprenylcistransferase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase YP_865759.1 PFAM: phosphatidate cytidylyltransferase; KEGG: lmo:lmo1316 phosphatidate cytidylyltransferase YP_865760.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_865761.1 TIGRFAM: membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: gme:Gmet_1257 peptidase M50, membrane-associated zinc metallopeptidase YP_865762.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: mag:amb2490 outer membrane protein/protective antigen OMA87 YP_865763.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: pca:Pcar_1252 outer membrane protein YP_865764.1 TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; KEGG: sgl:SG1932 (3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase YP_865765.1 KEGG: pca:Pcar_1255 UDP-N-acetylglucosamine acyltransferase; TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; PFAM: transferase YP_865766.1 PFAM: protein of unknown function DUF1009; KEGG: dps:DP2942 hypothetical protein YP_865767.1 PFAM: oxidoreductase domain protein; oxidoreductase, C-terminal domain; KEGG: pca:Pcar_1256 oxidoreductase, Gfo/Idh/MocA family YP_865768.1 KEGG: gsu:GSU2261 lipid-A-disaccharide synthase; TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase, family 19 YP_865769.1 TIGRFAM: thioredoxin; PFAM: thioredoxin domain; KEGG: sma:SAV7347 thioredoxin YP_865770.1 TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase subunit beta; PFAM: t-RNA-binding domain protein; KEGG: noc:Noc_0971 methionyl-tRNA synthetase, class Ia YP_865771.1 PFAM: GAF domain protein; SMART: metal-dependent phosphohydrolase, HD region; KEGG: dar:Daro_3357 GAF YP_865772.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; CHASE2 domain protein; KEGG: mfa:Mfla_2129 adenylate/guanylate cyclase YP_865773.1 TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; KEGG: bmb:BruAb1_0676 AcpS, holo-(acyl-carrier-protein) synthase YP_865774.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) YP_865775.1 KEGG: cvi:CV2096 probable transmembrane protein YP_865776.1 PFAM: glutamate-ammonia ligase adenylyltransferase; KEGG: pca:Pcar_2171 glutamate-ammonia ligase adenylyltransferase domain protein YP_865777.1 TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase, class IV; KEGG: dar:Daro_3294 branched-chain amino acid aminotransferase I YP_865778.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_865779.1 KEGG: hch:HCH_00616 hypothetical protein YP_865780.1 PFAM: type IV pilus assembly PilZ YP_865781.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; radical SAM protein; KEGG: gme:Gmet_2464 TatD-related deoxyribonuclease:radical SAM YP_865782.1 PFAM: PSP1 domain protein; KEGG: sth:STH3255 signal peptidase II YP_865783.1 KEGG: gsu:GSU2230 DNA polymerase III delta prime subunit; TIGRFAM: DNA polymerase III delta prime subunit; PFAM: ATPase AAA, central domain protein YP_865784.1 PFAM: thymidylate kinase; KEGG: dra:DR0111 dTMP kinase YP_865785.1 PFAM: aminodeoxychorismate lyase; KEGG: sde:Sde_1633 hypothetical protein YP_865786.1 PFAM: beta-ketoacyl synthase; KEGG: gsu:GSU1605 3-oxoacyl-(acyl-carrier-protein) synthase II YP_865787.1 TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; KEGG: nar:Saro_1339 acyl carrier protein YP_865788.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: vch:VC2021 3-oxoacyl-[acyl-carrier protein] reductase YP_865789.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase domain protein; KEGG: pca:Pcar_1437 malonyl CoA-acyl carrier protein transacylase YP_865791.1 PFAM: protein of unknown function DUF88; KEGG: rru:Rru_A1859 protein of unknown function DUF88 YP_865792.1 KEGG: csa:Csal_2134 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_865793.1 TIGRFAM: excinuclease ABC, C subunit; PFAM: excinuclease ABC, C subunit domain protein; excinuclease ABC, C subunit domain protein; UvrB/UvrC protein; KEGG: uvrC; excinuclease ABC, C subunit YP_865794.1 PFAM: prolipoprotein diacylglyceryl transferase; KEGG: ilo:IL0506 prolipoprotein diacylglyceryl transferase YP_865795.1 PFAM: prephenate dehydratase; KEGG: rru:Rru_A3162 prephenate dehydratase YP_865796.1 PFAM: protein of unknown function DUF548; KEGG: pfl:PFL_1155 hypothetical protein YP_865797.1 KEGG: noc:Noc_1301 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase; helicase-associated domain protein; protein of unknown function DUF1605; SMART: ATPase AAA; DEAD-like helicases-like YP_865798.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: gme:Gmet_1949 preprotein translocase SecG subunit YP_865799.1 PFAM: triosephosphate isomerase; KEGG: mag:amb1819 triosephosphate isomerase YP_865800.1 PFAM: phosphoglycerate kinase; KEGG: pca:Pcar_1332 phosphoglycerate kinase YP_865803.1 PFAM: purine phosphorylase, family 2; KEGG: afu:AF1788 methylthioadenosine phosphorylase (MtaP) YP_865804.1 PFAM: 2OG-Fe(II) oxygenase; SMART: prolyl 4-hydroxylase, subunit alpha; KEGG: sde:Sde_2920 fibro-slime YP_865805.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pae:PA1943 hypothetical protein YP_865806.1 PFAM: RimK domain protein ATP-grasp; KEGG: pae:PA1944 hypothetical protein YP_865807.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ade:Adeh_4009 two component transcriptional regulator, winged helix family YP_865808.1 TIGRFAM: efflux transporter RND family, MFP subunit; KEGG: sde:Sde_3096 membrane-fusion protein YP_865809.1 PFAM: acriflavin resistance protein; KEGG: pca:Pcar_0669 cobalt-zinc-cadmium resistance protein (CzcA)-like YP_865810.1 KEGG: gme:Gmet_0700 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein YP_865811.1 PFAM: hypothetical protein; Tetratricopeptide TPR_4; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: ccr:CC3128 TPR domain protein YP_865812.1 PFAM: response regulator receiver; KEGG: mag:amb3446 response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain YP_865813.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: mfa:Mfla_2395 periplasmic sensor signal transduction histidine kinase YP_865815.1 KEGG: ddi:DDB0220518 SNF2-related domain-containing protein YP_865817.1 SMART: rhodanese; KEGG: tcx:Tcr_1668 rhodanese-like YP_865818.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: mag:amb4076 methyl-accepting chemotaxis protein YP_865819.1 PFAM: 5'-nucleotidase domain protein; KEGG: bja:blr3515 probable Mn-dependent hydrolase YP_865820.1 KEGG: bja:blr3514 probable diheme cytochrome C YP_865821.1 KEGG: aae:aq_1809 hypothetical protein YP_865822.1 KEGG: rpb:RPB_4371 twin-arginine translocation pathway signal YP_865823.1 KEGG: bja:blr3511 probable cytochrome C YP_865824.1 PFAM: protein of unknown function DUF188; KEGG: rpb:RPB_3201 protein of unknown function DUF188 YP_865825.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: ilo:IL2493 cold shock protein YP_865826.1 KEGG: mfa:Mfla_1514 hypothetical protein YP_865829.1 PFAM: amidohydrolase; KEGG: pgi:PG0559 chlorohydrolase family protein YP_865830.1 PFAM: hypothetical protein; Tetratricopeptide TPR_4; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: sma:SAV250 hypothetical protein YP_865831.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis YP_865832.1 PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; FAD linked oxidase; KEGG: cvi:CV4235 probable (S)-2-hydroxy-acid oxidase YP_865833.1 TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: mca:MCA0774 aminopeptidase N YP_865834.1 PFAM: type IV pilus assembly PilZ YP_865835.1 PFAM: protein kinase; protein of unknown function DUF323; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: bte:BTH_II0256 serine/threonine protein kinase YP_865837.1 PFAM: glycosyl transferase, group 1; KEGG: plu:plu4862 WalR protein YP_865839.1 PFAM: protein of unknown function DUF454; KEGG: ade:Adeh_0524 protein of unknown function DUF454 YP_865840.1 PFAM: Uncharacterized conserved protein UCP033563; KEGG: mag:amb3480 hypothetical protein YP_865842.1 TIGRFAM: phosphonate ABC transporter periplasmic phosphonate-binding protein; KEGG: ana:all8089 phosphonate transport system substrate-binding protein YP_865843.1 KEGG: gme:Gmet_1707 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_865845.1 PFAM: glycosyl transferase, family 2; KEGG: mca:MCA0621 glycosyl transferase, group 2 family protein YP_865846.1 PFAM: protein of unknown function DUF805; KEGG: ppr:PBPRA2479 hypothetical protein YP_865847.1 PFAM: protein of unknown function DUF523; protein of unknown function DUF1722; KEGG: dps:DP2577 hypothetical protein YP_865849.1 PFAM: phosphoglucose isomerase (PGI); KEGG: rru:Rru_A2947 glucose-6-phosphate isomerase YP_865850.1 Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues YP_865853.1 PFAM: polynucleotide adenylyltransferase region; KEGG: psb:Psyr_4634 polynucleotide adenylyltransferase:metal-dependent phosphohydrolase, HD subdomain YP_865854.1 KEGG: dvu:DVU0501 hypothetical protein YP_865855.1 KEGG: rpd:RPD_4203 nitrogen fixation-related protein YP_865856.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: tcx:Tcr_0809 O-succinylhomoserine sulfhydrylase YP_865857.1 TIGRFAM: ribosomal protein L11 methyltransferase; PFAM: ribosomal L11 methyltransferase; KEGG: hit:NTHI1149 ribosomal protein L11 methyltransferase YP_865858.1 KEGG: rfr:Rfer_3749 translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase; TIGRFAM: eIF-2B alpha/beta/delta-related uncharacterized proteins; PFAM: initiation factor 2B related YP_865859.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: ppr:PBPRA0808 sodium-driven polar flagellar protein MotA YP_865860.1 PFAM: OmpA/MotB domain protein; KEGG: hch:HCH_05862 flagellar motor protein YP_865861.1 PFAM: type IV pilus assembly PilZ YP_865863.1 KEGG: mag:amb2980 hypothetical 918 kDa protein Y4LL; TIGRFAM: PAS sensor protein; diguanylate cyclase; ammonium transporter; PFAM: GGDEF domain containing protein; EAL domain protein; Rh family protein/ammonium transporter; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_865864.1 PFAM: thioredoxin domain; KEGG: sgl:SG2387 thioredoxin 1 YP_865865.1 PFAM: protein kinase; Sel1 domain protein repeat-containing protein; SMART: serine/threonine protein kinase; KEGG: nmu:Nmul_A0104 Sel1-like repeat YP_865866.1 PFAM: protein of unknown function DUF898, transmembrane; KEGG: rso:RSc0643 probable transmembrane protein YP_865867.1 PFAM: peptidase M48, Ste24p; KEGG: gme:Gmet_0096 peptidase M48, Ste24p YP_865868.1 PFAM: protein of unknown function DUF583; KEGG: cjr:CJE1229 hypothetical protein YP_865869.1 PFAM: peptidase M23B; KEGG: tdn:Tmden_1568 peptidase M23B YP_865870.1 PFAM: protein of unknown function UPF0047; KEGG: noc:Noc_1152 hypothetical protein YP_865871.1 PFAM: glycosyl transferase, family 2; KEGG: rru:Rru_A2124 glycosyl transferase, family 2 YP_865873.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: mma:MM2219 hypothetical protein YP_865874.1 KEGG: mlo:mlr7557 hypothetical protein YP_865876.1 KEGG: neu:NE1223 transposase YP_865878.1 PFAM: transposase IS66; KEGG: hal:VNG0056H hypothetical protein encoded by ISH10 YP_865879.1 PFAM: protein of unknown function DUF1568; KEGG: gsu:GSU2396 hypothetical protein YP_865881.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD; KEGG: bja:bll6292 probable Hemolysin secretion protein D YP_865882.1 KEGG: hch:HCH_06117 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter; peptidase C39, bacteriocin processing; SMART: AAA ATPase YP_865883.1 PFAM: Integrase, catalytic region; KEGG: nha:Nham_3914 integrase, catalytic region YP_865885.1 PFAM: IS66 Orf2 family protein; KEGG: rme:Rmet_1275 IS66 Orf2 like YP_865886.1 PFAM: transposase IS66; KEGG: ppu:PP3985 ISPpu13, transposase Orf2 YP_865887.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron, maturase-specific domain protein; KEGG: plu:plu1111 hypothetical protein YP_865888.1 PFAM: Integrase, catalytic region; KEGG: lpf:lpl1576 hypothetical protein YP_865889.1 PFAM: transposase, IS4 family protein; KEGG: gka:GK3116 transposase YP_865890.1 PFAM: transposase IS66; KEGG: ISPsy5, transposase YP_865891.1 KEGG: eba:ebA7202 reverse transcriptase/retron type YP_865892.1 PFAM: transposase IS66; KEGG: ppu:PP3985 ISPpu13, transposase Orf2 YP_865894.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron, maturase-specific domain protein; KEGG: sag:SAG0567 prophage LambdaSa1, reverse transcriptase/maturase family protein YP_865895.1 PFAM: IS66 Orf2 family protein; KEGG: rme:Rmet_1275 IS66 Orf2 like YP_865896.1 PFAM: transposase IS3/IS911 family protein; KEGG: par:Psyc_1688 transposase OrfA, IS3/IS911family YP_865897.1 PFAM: Integrase, catalytic region; KEGG: lpf:lpl1576 hypothetical protein YP_865899.1 PFAM: Integrase, catalytic region; KEGG: lpf:lpl1576 hypothetical protein YP_865900.1 PFAM: transposase IS3/IS911 family protein; KEGG: par:Psyc_1688 transposase OrfA, IS3/IS911family YP_865901.1 PFAM: transposase, IS4 family protein; KEGG: dsy:DSY0689 hypothetical protein YP_865902.1 KEGG: neu:NE1223 transposase YP_865903.1 PFAM: Appr-1-p processing domain protein; KEGG: stm:STM2587 phage tail assembly-like protein YP_865904.1 PFAM: metallophosphoesterase; KEGG: rfr:Rfer_4142 metallophosphoesterase YP_865905.1 PFAM: protein of unknown function DUF323; KEGG: dps:DP2422 hypothetical protein YP_865906.1 KEGG: mmu:11733 ankyrin 1, erythroid YP_865907.1 PFAM: metallophosphoesterase YP_865909.1 KEGG: tde:TDE2493 hypothetical protein YP_865910.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: nmu:Nmul_A0104 Sel1-like repeat YP_865914.1 PFAM: lytic transglycosylase, catalytic; KEGG: chy:CHY_0404 transglycosylase YP_865918.1 KEGG: eba:p1B277 hypothetical protein, probable transposase YP_865919.1 KEGG: vvy:VV1924 hypothetical protein YP_865920.1 PFAM: zinc finger, SWIM domain protein; KEGG: gvi:gll2284 hypothetical protein YP_865921.1 KEGG: noc:Noc_0660 hypothetical protein YP_865922.1 PFAM: helicase; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: hch:HCH_03804 distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster YP_865923.1 PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like; KEGG: hch:HCH_03805 superfamily II DNA/RNA helicase, SNF2 family YP_865924.1 KEGG: nar:Saro_0354 type II DNA modification enzyme YP_865926.1 KEGG: noc:Noc_1161 hypothetical protein YP_865927.1 KEGG: cdi:DIP0807 hypothetical protein YP_865928.1 KEGG: xft:PD2085 hypothetical protein YP_865930.1 KEGG: rpd:RPD_0957 hypothetical protein YP_865931.1 PFAM: heat shock protein Hsp20; KEGG: gme:Gmet_2986 heat shock protein HSP20 YP_865932.1 PFAM: peptidase M48, Ste24p; KEGG: dde:Dde_2161 peptidase, M48 family YP_865934.1 KEGG: rso:RSc0879 probable transmembrane protein YP_865936.1 KEGG: mca:MCA2675 hypothetical protein YP_865939.1 KEGG: mca:MCA2672 hypothetical protein YP_865940.1 KEGG: rso:RSc0874 probable transmembrane protein YP_865941.1 TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: sao:SAOUHSC_02182 tail length tape measure protein YP_865942.1 KEGG: eba:ebA5912 hypothetical protein YP_865943.1 KEGG: eba:ebA5913 hypothetical protein YP_865945.1 KEGG: hch:HCH_02903 hypothetical protein YP_865951.1 KEGG: wol:WD0274 hypothetical protein YP_865952.1 KEGG: bxe:Bxe_A3061 phage protein GP19 YP_865953.1 PFAM: peptidase S49; KEGG: rso:RSc0858 probable bacteriophage-related protein YP_865954.1 PFAM: response regulator receiver; KEGG: dde:Dde_1018 response regulator receiver domain protein (CheY-like) YP_865955.1 TIGRFAM: phage portal protein, lambda family; PFAM: phage portal protein, lambda; KEGG: mca:MCA2660 prophage LambdaMc01, portal protein, lambda family YP_865956.1 KEGG: mag:amb0373 hypothetical protein YP_865957.1 PFAM: phage terminase GpA; KEGG: bhe:BH03350 phage terminase large subunit (GP15) YP_865960.1 KEGG: mca:MCA2656 hypothetical protein YP_865961.1 PFAM: histone family protein DNA-binding protein; KEGG: mag:amb2023 bacterial nucleoid DNA-binding protein YP_865962.1 PFAM: DNA methylase N-4/N-6 domain protein; ParB domain protein nuclease; KEGG: mag:amb0363 modification methylase DpnIIB YP_865963.1 KEGG: mag:amb1168 hypothetical protein YP_865964.1 SMART: HNH nuclease; KEGG: pca:Pcar_2805 hypothetical protein YP_865965.1 TIGRFAM: addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: rru:Rru_A2377 predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain YP_865966.1 PFAM: plasmid stabilization system; KEGG: rru:Rru_A2376 hypothetical protein YP_865967.1 KEGG: aba:acid345_3187 hypothetical protein YP_865970.1 PFAM: histone family protein DNA-binding protein; KEGG: mag:amb4004 bacterial nucleoid DNA-binding protein YP_865971.1 PFAM: peptidase M15A; KEGG: sil:SPO3675 hypothetical protein YP_865972.1 PFAM: endonuclease I; KEGG: pfo:Pfl_1915 deoxyribonuclease I YP_865973.1 PFAM: histone family protein DNA-binding protein; KEGG: ade:Adeh_1969 integration host factor, subunit alpha YP_865974.1 KEGG: mag:amb0361 hypothetical protein YP_865975.1 KEGG: mag:amb0360 hypothetical protein YP_865976.1 KEGG: rso:RSc3228 bacteriophage-related protein YP_865977.1 PFAM: TOPRIM domain protein; KEGG: wol:WD0609 regulatory protein RepA YP_865978.1 KEGG: rso:RSc3231 hypothetical protein YP_865979.1 KEGG: sfx:S1991 hypothetical bacteriophage protein YP_865981.1 PFAM: helicase; type III restriction enzyme, res subunit; DEAD/DEAH box helicase; SMART: DEAD-like helicases-like; KEGG: DNA/RNA helicase YP_865982.1 KEGG: hypothetical protein YP_865983.1 KEGG: mca:MCA2644 hypothetical protein YP_865984.1 KEGG: hch:HCH_05689 hypothetical protein YP_865985.1 KEGG: nwi:Nwi_1961 hypothetical protein YP_865987.1 KEGG: dde:Dde_1928 sigma-24 (FecI-like) YP_865988.1 PFAM: peptidase S24, S26A and S26B; KEGG: lpf:plpl0056 DNA polymerase V YP_865989.1 KEGG: dde:Dde_1930 hypothetical protein YP_865990.1 KEGG: dde:Dde_0892 hypothetical protein YP_865991.1 KEGG: dde:Dde_0893 LexA repressor; TIGRFAM: LexA repressor; PFAM: regulatory protein, MarR; iron dependent repressor; peptidase S24, S26A and S26B; LexA DNA-binding domain protein YP_865992.1 KEGG: mfa:Mfla_2542 hypothetical protein YP_865993.1 KEGG: mag:amb0345 hypothetical protein YP_865994.1 PFAM: Resolvase, N-terminal domain; Recombinase; KEGG: mag:amb0344 site-specific recombinase YP_865995.1 KEGG: mag:amb0343 hypothetical protein YP_865996.1 KEGG: noc:Noc_0498 hypothetical protein YP_865998.1 KEGG: wsu:WS0762 phosphate ABC transporter YP_865999.1 KEGG: ava:Ava_0647 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_866000.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: rme:Rmet_4516 two component LuxR family transcriptional regulator YP_866001.1 PFAM: sulfate transporter/antisigma-factor antagonist STAS YP_866003.1 KEGG: sdn:Sden_2826 undecaprenol kinase, TIGRFAM: undecaprenol kinase; PFAM: bacitracin resistance protein BacA YP_866004.1 PFAM: Heavy metal transport/detoxification protein; KEGG: bsu:BG14107 similar to mercuric transporter YP_866005.1 KEGG: rru:Rru_A3352 pseudouridylate synthase; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase YP_866006.1 PFAM: protein of unknown function UPF0125; KEGG: mag:amb2619 hypothetical protein YP_866007.1 PFAM: cobyrinic acid a,c-diamide synthase; KEGG: csa:Csal_1494 cobyrinic acid a,c-diamide synthase YP_866009.1 catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide YP_866010.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: noc:Noc_1836 ABC transporter ATPase YP_866011.1 PFAM: conserved hypothetical protein 245; KEGG: hch:HCH_01607 ABC-type uncharacterized transporter, permease YP_866012.1 KEGG: dvu:DVU2907 umuD protein; TIGRFAM: LexA repressor; PFAM: peptidase S24, S26A and S26B; LexA DNA-binding domain protein YP_866013.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: syf:Synpcc7942_1550 DNA-directed DNA polymerase YP_866014.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sat:SYN_02058 4Fe-4S binding protein YP_866015.1 PFAM: protein of unknown function DUF362; KEGG: sat:SYN_02059 hypothetical cytosolic protein YP_866017.1 PFAM: aldo/keto reductase; KEGG: chy:CHY_1118 oxidoreductase, aldo/keto reductase family YP_866019.1 PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: cvi:CV1579 probable two-component hybrid sensor and regulator YP_866020.1 PFAM: CheB methylesterase; MCP methyltransferase, CheR-type; KEGG: cvi:CV1580 probable two-component hybrid sensor-regulator protein YP_866021.1 KEGG: bba:Bd2849 sensor histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_866022.1 PFAM: ribonuclease H; KEGG: rpa:RPA4269 ribonuclease H YP_866023.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: mca:MCA2449 capsular polysaccharide biosynthesis protein I YP_866024.1 KEGG: pca:Pcar_1946 3-deoxy-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase YP_866025.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: dvu:DVU3082 methyl-accepting chemotaxis protein YP_866026.1 forms a tetramer composed of 2 subunit alphas and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm YP_866027.1 PFAM: NAD(P) transhydrogenase subunit beta; KEGG: noc:Noc_0261 NAD(P) transhydrogenase subunit beta YP_866028.1 PFAM: histone family protein DNA-binding protein; KEGG: mlo:msr3202 integration host factor beta chain YP_866029.1 KEGG: mca:MCA2341 ParA family protein YP_866030.1 PFAM: ankyrin; KEGG: dge:Dgeo_1884 ankyrin YP_866031.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: syf:Synpcc7942_2099 dTDP-4-dehydrorhamnose reductase YP_866032.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: msu:MS0137 ATPase components of ABC transporters with duplicated ATPase domains YP_866033.1 PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase, FKBP-type; KEGG: par:Psyc_2090 peptidyl-prolyl isomerase YP_866034.1 PFAM: histone family protein DNA-binding protein; KEGG: nha:Nham_0066 integration host factor subunit beta YP_866035.1 PFAM: Insertion element protein YP_866036.1 PFAM: cell wall hydrolase/autolysin; KEGG: hch:HCH_05387 N-acetylmuramoyl-L-alanine amidase YP_866037.1 TIGRFAM: ubiquinone biosynthesis O-methyltransferase; PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: hch:HCH_04357 ubiquinone biosynthesis O-methyltransferase YP_866039.1 KEGG: ccr:CC0453 ribosomal large subunit pseudouridine synthase d; TIGRFAM: pseudouridine synthase; PFAM: RNA-binding S4 domain protein; pseudouridine synthase YP_866041.1 KEGG: dps:DP1989 hypothetical protein YP_866042.1 KEGG: dps:DP2650 chemotaxis protein CheX YP_866043.1 PFAM: PHP C-terminal domain protein; KEGG: bcl:ABC3814 capsular polysaccharide biosynthesis protein YP_866044.1 TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transporter permease DctM subunit; KEGG: pae:PA5169 probable C4-dicarboxylate transporter YP_866045.1 PFAM: tripartite ATP-independent periplasmic transporter DctQ component; KEGG: wsu:WS1864 small integral C4-dicarboxylate membrane transporter YP_866046.1 TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: wsu:WS1863 C4-dicarboxylate-binding periplasmic protein precursor YP_866047.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: hch:HCH_01604 peroxiredoxin YP_866048.1 KEGG: pca:Pcar_0593 hypothetical protein YP_866049.1 KEGG: mobA; molybdopterin-guanine dinucleotide biosynthesis protein A YP_866050.1 PFAM: peptidase M16 domain protein; KEGG: mfa:Mfla_0735 peptidase M16-like protein YP_866051.1 PFAM: peptidase M16 domain protein; KEGG: lpp:lpp2725 hypothetical protein YP_866053.1 TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8, signal peptidase II; KEGG: rpb:RPB_4181 lipoprotein signal peptidase YP_866054.1 TIGRFAM: isoleucyl-tRNA synthetase; KEGG: gme:Gmet_0351 isoleucyl-tRNA synthetase, class Ia YP_866055.1 TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: riboflavin kinase / FAD synthetase; KEGG: ppu:PP0602 hypothetical protein YP_866056.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: mca:MCA0533 peptidyl-prolyl cis-trans isomerse D YP_866057.1 PFAM: membrane-bound metal-dependent hydrolase; KEGG: noc:Noc_2227 membrane-bound metal-dependent hydrolase YP_866058.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: mag:amb3054 methyl-accepting chemotaxis protein YP_866059.1 PFAM: AMMECR1 domain protein; protein of unknown function DUF52; KEGG: tbd:Tbd_1586 hypothetical protein YP_866060.1 PFAM: extracellular solute-binding protein, family 5; KEGG: rme:Rmet_2146 extracellular solute-binding protein, family 5 YP_866061.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: reu:Reut_A2128 binding-protein-dependent transport systems inner membrane component YP_866062.1 KEGG: gvi:gll4136 unknown protein YP_866063.1 KEGG: cte:CT2249 sulfite reductase, dissimilatory-type, subunit alpha; TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region YP_866064.1 KEGG: cch:Cag_1955 sulfite reductase, dissimilatory-type subunit beta; TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region YP_866065.1 unknown function YP_866066.1 KEGG: tcx:Tcr_0149 hypothetical protein YP_866067.1 KEGG: cch:Cag_1953 hypothetical protein YP_866068.1 PFAM: transcriptional coactivator/pterin dehydratase; KEGG: neu:NE0077 pterin 4 alpha carbinolamine dehydratase YP_866069.1 PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: lma:LmjF27.0240 kinetoplast-associated protein-like protein YP_866071.1 PFAM: radical SAM protein; KEGG: tdn:Tmden_0182 radical SAM YP_866072.1 KEGG: pca:Pcar_1143 hypothetical protein YP_866073.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; KEGG: lic:LIC12199 UDP-glucose 4-epimerase YP_866075.1 PFAM: protein of unknown function UPF0153; KEGG: tcx:Tcr_1327 hypothetical protein YP_866076.1 PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; oligopeptidase F; KEGG: rru:Rru_A2192 peptidase M3B, oligoendopeptidase-related clade 3 YP_866077.1 PFAM: NUDIX hydrolase YP_866078.1 KEGG: bja:blr3251 hypothetical protein YP_866079.1 TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: Haemagluttinin repeat-containing protein; filamentous haemagglutinin domain protein; KEGG: dps:DPPB56 hypothetical protein YP_866080.1 PFAM: polypeptide-transport-associated domain protein, ShlB-type; KEGG: psp:PSPPH_0780 outer membrane protein, OMP85 family YP_866081.1 KEGG: nmu:Nmul_A0923 secretion protein HlyD YP_866082.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins YP_866083.1 KEGG: nmu:Nmul_A0925 peptidase, M50 family YP_866084.1 KEGG: sil:SPO2715 GAF domain protein YP_866085.1 KEGG: rba:RB10483 hypothetical protein YP_866086.1 TIGRFAM: outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; pentapeptide repeat protein; TMP repeat-containing protein; KEGG: mag:amb1268 large exoprotein YP_866087.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: mfa:Mfla_2534 type I secretion outer membrane protein, TolC YP_866088.1 PFAM: SapC family protein; KEGG: sil:SPO2717 SapC protein YP_866089.1 PFAM: protein of unknown function DUF77; KEGG: aae:aq_2067 hypothetical protein YP_866090.1 KEGG: cel:T20B6.3 Hypothetical protein T20B6.3 YP_866091.1 PFAM: transposase IS66; KEGG: ppu:PP3985 ISPpu13, transposase Orf2 YP_866092.1 PFAM: IS66 Orf2 family protein; KEGG: rme:Rmet_1275 IS66 Orf2 like YP_866094.1 KEGG: mac:MA1182 hypothetical protein YP_866095.1 PFAM: sulfate transporter/antisigma-factor antagonist STAS YP_866096.1 PFAM: FeoA family protein; KEGG: mba:Mbar_A1450 ferrous iron transporter A YP_866097.1 PFAM: transposase IS66; KEGG: ppu:PP3985 ISPpu13, transposase Orf2 YP_866098.1 PFAM: IS66 Orf2 family protein; KEGG: rme:Rmet_1275 IS66 Orf2 like YP_866100.1 TIGRFAM: sulfate transporter; PFAM: sulfate transporter/antisigma-factor antagonist STAS; xanthine/uracil/vitamin C permease; sulfate transporter; KEGG: tbd:Tbd_2609 sulfate anion transporter YP_866101.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_866102.1 PFAM: translation initiation factor SUI1; KEGG: pol:Bpro_2734 translation initiation factor SUI1 YP_866103.1 PFAM: Hemolysin-type calcium-binding region; glycosyl hydrolase, BNR repeat-containing protein; Haemagluttinin repeat-containing protein; KEGG: cch:Cag_0616 parallel beta-helix repeat YP_866104.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins YP_866105.1 PFAM: peptidase M50; KEGG: cch:Cag_1407 peptidase, M50 family YP_866106.1 KEGG: cch:Cag_1408 membrane-fusion protein-like YP_866107.1 PFAM: secretion protein HlyD; KEGG: cch:Cag_1409 membrane-fusion protein-like YP_866108.1 PFAM: outer membrane efflux protein; KEGG: cch:Cag_0615 outer membrane protein-like YP_866109.1 PFAM: SapC family protein; KEGG: cch:Cag_0613 SapC-related protein YP_866110.1 PFAM: transposase, IS4 family protein; KEGG: gka:GK3116 transposase YP_866111.1 PFAM: rubrerythrin; KEGG: mhu:Mhun_1807 rubrerythrin YP_866112.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: tma:TM1217 glutamate synthase (NADPH) small chain YP_866113.1 Catalyzes the transfer of electrons from NADH to quinone YP_866114.1 PFAM: NADH dehydrogenase (ubiquinone), 30 kDa subunit; KEGG: tma:TM1215 NADH dehydrogenase I chain C YP_866115.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen YP_866116.1 KEGG: tko:TK1218 membrane bound hydrogenase, MbxM subunit YP_866117.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: chy:CHY_1832 carbon monoxide-induced hydrogenase, membrane anchor subunit YP_866118.1 PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: pfu:PF1448 multicomponent Na+:H+ antiporter subunit C YP_866119.1 subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_866120.1 KEGG: pab:PAB0486.1n hypothetical protein YP_866121.1 subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport YP_866122.1 PFAM: multiple resistance and pH regulation protein F; KEGG: tma:TM1206 multicomponent Na+:H+ antiporter subunit F YP_866123.1 PFAM: cation antiporter; KEGG: pab:PAB0485 multicomponent Na+:H+ antiporter subunit E YP_866124.1 PFAM: methyltransferase small; methyltransferase type 11; methyltransferase type 12; KEGG: pha:PSHAa2245 ribosomal RNA small subunit methyltransferase D YP_866125.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: ccr:CC0231 cytidine and deoxycytidylate deaminase family protein YP_866127.1 KEGG: tcx:Tcr_1150 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; Cache, type 2 domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_866129.1 KEGG: cvi:CV3248 hypothetical protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_866130.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: rfr:Rfer_3416 conserved hypothetical protein, potential methyltransferase YP_866131.1 PFAM: histone deacetylase superfamily; KEGG: noc:Noc_0962 histone deacetylase superfamily YP_866132.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: ret:RHE_CH02484 uroporphyrin-III C-methyltransferase protein YP_866134.1 KEGG: tbd:Tbd_1456 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_866135.1 PFAM: regulatory protein, TetR; KEGG: mmp:MMP0791 TetR family transcriptional regulator member YP_866136.1 KEGG: son:SO0859 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_866137.1 PFAM: Integrase, catalytic region; KEGG: lpf:lpl1576 hypothetical protein YP_866138.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: hemerythrin HHE cation binding domain protein; KEGG: xcb:XC_1765 hypothetical protein YP_866141.1 KEGG: mag:amb1026 hypothetical protein YP_866142.1 PFAM: hypothetical protein; KEGG: mag:amb0971 TPR repeat YP_866144.1 KEGG: mag:amb0400 hypothetical protein YP_866145.1 KEGG: mag:amb1017 hypothetical protein YP_866146.1 PFAM: major facilitator superfamily MFS_1; ferric reductase domain protein transmembrane component, N-terminal domain; KEGG: mag:amb1016 permease of the major facilitator superfamily YP_866147.1 KEGG: mag:amb0400 hypothetical protein YP_866148.1 KEGG: mba:Mbar_A3708 hypothetical protein YP_866150.1 KEGG: cal:orf19.4334 hypothetical protein YP_866151.1 PFAM: type IV pilus assembly PilZ YP_866153.1 KEGG: lpf:lpl1070 hypothetical protein YP_866154.1 KEGG: lma:LmjF03.0270 hypothetical protein YP_866155.1 KEGG: mag:amb0976 hypothetical protein YP_866156.1 KEGG: mag:amb0975 hypothetical protein YP_866157.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: mag:amb1007 predicted Co/Zn/Cd cation transporters YP_866158.1 PFAM: LemA family protein; KEGG: mag:amb1005 hypothetical protein YP_866159.1 PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: ddi:DDB0216612 hypothetical protein YP_866160.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: mag:amb0971 TPR repeat YP_866161.1 KEGG: mag:amb0970 hypothetical protein YP_866162.1 PFAM: protein of unknown function DUF81; KEGG: mag:amb0969 trypsin-like serine protease YP_866163.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: mag:amb0967 predicted Co/Zn/Cd cation transporters YP_866165.1 KEGG: mag:amb0957 hypothetical protein YP_866166.1 KEGG: mag:amb0965 actin-like ATPase YP_866167.1 KEGG: lma:LmjF34.0690 hypothetical protein, conserved YP_866169.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; KEGG: pat:Patl_4285 metal dependent phosphohydrolase YP_866171.1 KEGG: mja:MJ0754 hypothetical protein YP_866172.1 KEGG: mag:amb0951 tightly bound bacterial magnetic particle protein YP_866173.1 KEGG: dme:CG7874-PA CG7874 gene product from transcript CG7874-RA YP_866174.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: mag:amb0963 trypsin-like serine protease typically periplasmic YP_866175.1 KEGG: mag:amb0962 hypothetical protein YP_866176.1 PFAM: major facilitator superfamily MFS_1; KEGG: mag:amb0961 permease of the major facilitator superfamily YP_866177.1 KEGG: mag:amb0400 hypothetical protein YP_866178.1 KEGG: gsu:GSU1032 methyl-accepting chemotaxis protein YP_866179.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: csa:Csal_1814 amino acid carrier protein YP_866181.1 KEGG: mag:amb0957 hypothetical protein YP_866182.1 KEGG: mag:amb1027 cell wall protein TIR3 precursor YP_866183.1 PFAM: cyclic nucleotide-binding YP_866184.1 exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH YP_866185.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO3999 sensor histidine kinase YP_866187.1 SMART: rhodanese; KEGG: tac:Ta0643 hypothetical protein YP_866188.1 KEGG: nmu:Nmul_A1424 hypothetical protein YP_866189.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; hypothetical protein; PAS fold domain protein; KEGG: sat:SYN_00226 signal transduction histidine kinase YP_866190.1 PFAM: CheC domain protein; KEGG: rpc:RPC_4604 CheC, inhibitor of MCP methylation YP_866191.1 PFAM: response regulator receiver; KEGG: mag:amb4152 FOG: CheY-like receiver YP_866192.1 PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: aba:acid345_1524 CheA signal transduction histidine kinases YP_866194.1 PFAM: ABC transporter; KEGG: xom:XOO_0342 permease YP_866195.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ccr:CC0188 ABC transporter ATP-binding protein YP_866196.1 PFAM: ROSMUCR transcriptional regulator; KEGG: mlo:mll6260 transcriptional regulator YP_866197.1 PFAM: diacylglycerol kinase; KEGG: tcx:Tcr_1599 diacylglycerol kinase YP_866198.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; KEGG: noc:Noc_2718 HAD-superfamily hydrolase subfamily IIB YP_866199.1 PFAM: endonuclease/exonuclease/phosphatase YP_866200.1 PFAM: glycosyl transferase, group 1; KEGG: rpd:RPD_1631 glycosyl transferase, group 1 YP_866201.1 KEGG: syn:sll1394 peptide methionine sulfoxide reductase; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: methionine sulfoxide reductase A YP_866203.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: nmu:Nmul_A0104 Sel1-like repeat YP_866204.1 PFAM: response regulator receiver; SMART: PAS domain containing protein; KEGG: ana:all5309 two-component hybrid sensor and regulator YP_866205.1 KEGG: rpa:RPA3927 phosphoheptose isomerase YP_866206.1 PFAM: YibE/F family protein; KEGG: sma:SAV4266 hypothetical protein YP_866208.1 PFAM: helix-turn-helix domain protein YP_866209.1 KEGG: xla:398236 Swift Pfam: BRCT HCV_NS4a PROSITE: GLN_RICH GLU_RICH BRCT YP_866210.1 PFAM: response regulator receiver; KEGG: dar:Daro_0007 response regulator receiver:metal-dependent phosphohydrolase, HD subdomain YP_866211.1 PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; KEGG: ava:Ava_0285 cobalamin synthesis protein/P47K YP_866212.1 PFAM: Hpt domain protein; KEGG: pol:Bpro_4465 adenylate/guanylate cyclase YP_866213.1 PFAM: response regulator receiver; Hpt domain protein; KEGG: dar:Daro_3006 PAS YP_866214.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: mag:amb2930 sensor protein BarA YP_866215.1 SMART: extracellular solute-binding protein, family 3; KEGG: nha:Nham_2071 extracellular solute-binding protein, family 3 YP_866216.1 KEGG: nme:NMB1820 pilin glycosylation protein PglB YP_866217.1 TIGRFAM: phosphoheptose isomerase; KEGG: lic:LIC11825 phosphoheptose isomerase YP_866218.1 PFAM: protein of unknown function DUF81; KEGG: noc:Noc_2511 protein of unknown function DUF81 YP_866219.1 PFAM: Chromosomal replication initiator, DnaA; KEGG: gsu:GSU1078 chromosomal replication initiator protein DnaA, truncation YP_866220.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: nwi:Nwi_1596 CDP-alcohol phosphatidyltransferase YP_866222.1 KEGG: reu:Reut_A2773 phosphoribosylaminoimidazole synthetase; TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein YP_866223.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase; KEGG: pca:Pcar_1292 phosphoribosylglycinamide formyltransferase YP_866225.1 PFAM: 3-dehydroquinate synthase; KEGG: tbd:Tbd_0315 3-dehydroquinate synthase YP_866227.1 KEGG: mag:amb3236 membrane carboxypeptidase/penicillin-binding protein; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase YP_866228.1 PFAM: NnrS family protein; KEGG: hch:HCH_01371 uncharacterized protein involved in response to NO YP_866229.1 TIGRFAM: RNA polymerase sigma factor RpoH; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: rru:Rru_A1110 sigma 32 (RpoH) YP_866230.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: bpm:BURPS1710b_0878 phospholipid and glycerol acyltransferase YP_866231.1 KEGG: xcv:XCV0900 dimethyladenosine transferase; TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase YP_866232.1 KEGG: ccr:CC1686 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: pyridoxal phosphate biosynthetic protein PdxA YP_866233.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: mca:MCA0602 peptidyl-prolyl cis-trans isomerase SurA YP_866234.1 PFAM: OstA family protein; organic solvent tolerance protein; KEGG: tbd:Tbd_2337 organic solvent tolerance transmembrane protein YP_866235.1 KEGG: rru:Rru_A3431 folylpolyglutamate synthetase; TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein YP_866236.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, subunit beta; KEGG: ilo:IL1016 acetylCoA carboxylase, carboxytransferase component subunit beta YP_866237.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: gsu:GSU2378 N-(5'phosphoribosyl)anthranilate isomerase YP_866238.1 PFAM: indole-3-glycerol phosphate synthase; KEGG: rpd:RPD_2829 indole-3-glycerol-phosphate synthase YP_866239.1 KEGG: pca:Pcar_2348 tyrosyl-tRNA synthetase; TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase, class Ib YP_866240.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling YP_866241.1 protein associated with Co2+ and Mg2+ efflux YP_866242.1 KEGG: tel:tlr1214 peptide methionine sulfoxide reductase; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: methionine sulfoxide reductase B YP_866243.1 KEGG: sat:SYN_00978 methyl-accepting chemotaxis protein domain YP_866245.1 SMART: GGDEF domain containing protein YP_866246.1 KEGG: cch:Cag_0030 ferredoxin 2Fe-2S YP_866248.1 PFAM: response regulator receiver; stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: hch:HCH_05185 response regulator containing a CheY-like receiver domain and a GGDEF domain YP_866251.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: eba:ebA4468 DNA-binding response regulator OmpR YP_866252.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rfr:Rfer_3645 periplasmic sensor signal transduction histidine kinase YP_866253.1 KEGG: tfu:Tfu_2516 hypothetical protein YP_866257.1 KEGG: mag:amb4367 predicted integral membrane protein linked to a cation pump YP_866258.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mlo:mll6626 nitrogen fixation protein FixG YP_866259.1 CcoN; FixN YP_866260.1 TIGRFAM: cytochrome C oxidase cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: sil:SPO3525 cytochrome C oxidase cbb3-type, subunit II YP_866261.1 TIGRFAM: cytochrome C oxidase cbb3-type, subunit III; KEGG: tbd:Tbd_0341 cytochrome C oxidase cbb3-type, subunit III YP_866263.1 KEGG: eba:ebB186 hypothetical protein YP_866264.1 PFAM: TrkA-N domain protein; ion transport 2 domain protein,; KEGG: mfa:Mfla_2071 TrkA-N YP_866265.1 TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: hch:HCH_02268 cytochrome oxidase maturation protein, cbb3-type YP_866266.1 KEGG: tcx:Tcr_1960 heavy metal translocating P-type ATPase; TIGRFAM: ATPase P; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: haloacid dehalogenase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein YP_866267.1 KEGG: tbd:Tbd_2115 RND multidrug efflux membrane fusion protein MexE precursor YP_866268.1 PFAM: outer membrane efflux protein; KEGG: tbd:Tbd_2116 hypothetical protein YP_866269.1 KEGG: aae:aq_1669 hypothetical protein YP_866271.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpd:RPD_1918 chemotaxis sensory transducer YP_866272.1 KEGG: tfu:Tfu_0435 hypothetical protein YP_866274.1 PFAM: antibiotic biosynthesis monooxygenase; KEGG: ttj:TTHB222 hypothetical protein YP_866275.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pae:PA3258 hypothetical protein YP_866276.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: dar:Daro_3350 response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal:Hpt YP_866277.1 KEGG: hch:HCH_02557 hypothetical protein YP_866278.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: gme:Gmet_1669 TonB-dependent receptor, plug YP_866279.1 KEGG: dsy:DSY0277 hypothetical protein YP_866280.1 KEGG: rfr:Rfer_1918 hypothetical protein YP_866281.1 PFAM: cobalbumin biosynthesis enzyme; KEGG: xac:XAC3187 adenosyl cobinamide kinase YP_866282.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: ccr:CC0093 integral membrane protein YP_866283.1 PFAM: FAD dependent oxidoreductase; protein of unknown function DUF752; KEGG: csa:Csal_0704 protein of unknown function DUF752 YP_866284.1 PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: hch:HCH_01618 signal transduction histidine kinase regulating C4-dicarboxylate transporter YP_866286.1 KEGG: tbd:Tbd_1456 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_866287.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bbr:BB2938 probable LysR-family transcriptional regulator YP_866288.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: mlo:mll1012 periplasmic ribose-binding protein YP_866289.1 KEGG: gme:Gmet_1707 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_866290.1 KEGG: eli:ELI_12150 DnaK suppressor protein YP_866291.1 KEGG: yps:YPTB2090 selenophosphate synthetase; TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein domain protein YP_866292.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA YP_866294.1 KEGG: dps:DP0663 hypothetical protein YP_866295.1 KEGG: dsy:DSY0035 hypothetical protein YP_866296.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: mfa:Mfla_0802 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) YP_866297.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: dps:DP0495 similar to methyl-accepting chemotaxis protein YP_866298.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: bja:bll7295 hypothetical protein YP_866299.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: gme:Gmet_1707 multi-sensor hybrid histidine kinase YP_866300.1 KEGG: tcx:Tcr_2180 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: extracellular solute-binding protein, family 3; response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_866301.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide YP_866302.1 KEGG: rru:Rru_A1214 dihydrolipoamide succinyltransferase; TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein YP_866303.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; KEGG: rru:Rru_A1215 dihydrolipoamide dehydrogenase YP_866304.1 PFAM: pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile region; KEGG: dps:DP0823 phosphoenolpyruvate synthase/pyruvate phosphate dikinase YP_866305.1 KEGG: dps:DP0103 related to glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_866306.1 PFAM: metallophosphoesterase; KEGG: hch:HCH_01549 predicted phosphohydrolase YP_866307.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: gsu:GSU1298 methyl-accepting chemotaxis protein YP_866308.1 PFAM: glycosyl transferase, group 1; KEGG: mca:MCA1168 colanic acid biosynthesis glycosyl transferase YP_866309.1 PFAM: O-antigen polymerase; KEGG: vch:VC0931 hypothetical protein YP_866311.1 PFAM: lipopolysaccharide biosynthesis; KEGG: hch:HCH_04679 chain length determinant protein YP_866312.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase; KEGG: nwi:Nwi_0649 HAD-superfamily hydrolase subfamily IA, variant 3 YP_866313.1 PFAM: GCN5-related N-acetyltransferase; N-acetylneuraminic acid synthase, N-terminal domain; SAF domain; KEGG: bsu:BG10613 spore coat polysaccharide biosynthesis protein spsE YP_866314.1 PFAM: NUDIX hydrolase; KEGG: gox:GOX1783 hypothetical protein YP_866315.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: mag:amb0716 predicted nucleoside-diphosphate sugar epimerase YP_866316.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: ccr:CC0234 flagellin modification protein FlmB YP_866317.1 KEGG: bba:Bd2942 hypothetical protein YP_866318.1 PFAM: LmbE family protein; KEGG: sme:SMb21247 conserved hypothetical protein, possibly membrane-associated YP_866319.1 KEGG: gme:Gmet_2018 cellulose biosynthesis-like protein YP_866320.1 PFAM: acylneuraminate cytidylyltransferase; KEGG: ppr:PBPRA2709 NeuA YP_866321.1 TIGRFAM: lipopolysaccharide heptosyltransferase III, PFAM: glycosyl transferase, family 9; KEGG: bps:BPSL1123 LPS core biosynthesis-related protein YP_866322.1 PFAM: glycosyl transferase, group 1; KEGG: dge:Dgeo_1099 glycosyl transferase, group 1 YP_866323.1 KEGG: bja:blr6001 hypothetical protein YP_866325.1 KEGG: sat:SYN_01564 phospholipid-lipopolysaccharide ABC transporter; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: ATPase AAA YP_866326.1 PFAM: glycosyl transferase, group 1; KEGG: fra:Francci3_1293 glycosyl transferase, group 1 YP_866327.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_866328.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: eli:ELI_13355 aminotransferase YP_866329.1 KEGG: eli:ELI_13350 acetyltransferase YP_866330.1 PFAM: oxidoreductase domain protein; oxidoreductase, C-terminal domain; KEGG: cvi:CV4127 probable dehydrogenase YP_866331.1 PFAM: PP-loop domain protein; KEGG: pae:PA3150 LPS biosynthesis protein WbpG YP_866332.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: mhu:Mhun_3088 ABC transporter YP_866333.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_866334.1 KEGG: noc:Noc_1958 hypothetical protein YP_866335.1 PFAM: glycosyl transferase, group 1; KEGG: ade:Adeh_2772 glycosyl transferase, group 1 YP_866336.1 TIGRFAM: methyltransferase FkbM family; KEGG: mka:MK0637 SAM-dependent methyltransferase YP_866337.1 PFAM: glycosyl transferase, group 1; KEGG: syn:slr1076 hypothetical protein YP_866339.1 PFAM: ABC transporter; KEGG: sat:SYN_02655 ABC-type polysaccharide/polyol phosphate export systems, permease YP_866340.1 PFAM: glycosyl transferase, group 1; KEGG: pmu:PM1006 hypothetical Synechocystis sp. YP_866341.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: syn:slr1072 GDP-D-mannose dehydratase YP_866342.1 PFAM: protein of unknown function UPF0052 and CofD; KEGG: dde:Dde_3600 hypothetical protein YP_866344.1 TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Pi-cotransporter; KEGG: vvy:VVA0097 hypothetical protein YP_866345.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; KEGG: rsp:RSP_2832 predicted conserved flavoprotein YP_866346.1 PFAM: response regulator receiver; KEGG: dar:Daro_0110 response regulator receiver YP_866347.1 PFAM: histidine triad (HIT) protein; KEGG: pha:PSHAa2385 HIT hydrolase YP_866348.1 PFAM: response regulator receiver; KEGG: dar:Daro_0110 response regulator receiver YP_866349.1 KEGG: mfa:Mfla_2010 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related YP_866350.1 PFAM: glycosyl transferase, family 2; KEGG: mma:MM2217 hypothetical protein YP_866351.1 PFAM: nucleotidyl transferase; KEGG: aba:acid345_0305 nucleotidyl transferase YP_866352.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose YP_866353.1 PFAM: glycosyl transferase, family 2; KEGG: gsu:GSU1962 glycosyl transferase, group 2 family protein YP_866354.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: tbd:Tbd_2225 sulfide-quinone reductase YP_866355.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: mag:amb0793 predicted pyridoxal phosphate-dependent enzyme YP_866356.1 KEGG: tcx:Tcr_1150 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_866357.1 KEGG: bba:Bd2075 D-ribose periplasmic binding protein YP_866358.1 PFAM: transposase, IS4 family protein; KEGG: gka:GK3116 transposase YP_866359.1 KEGG: mac:MA2013 sensory transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_866360.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: cyclic nucleotide-binding; hemerythrin HHE cation binding domain protein; KEGG: mag:amb1682 hypothetical protein YP_866361.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: dde:Dde_1942 metal dependent phosphohydrolase YP_866362.1 KEGG: son:SO0859 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; MHYT domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_866363.1 TIGRFAM: regulatory protein, FmdB family; KEGG: tde:TDE2661 hypothetical protein YP_866364.1 PFAM: ribosomal protein L9; KEGG: nme:NMB1320 50S ribosomal protein L9 YP_866365.1 KEGG: sat:SYN_00642 hypothetical membrane protein YP_866366.1 PFAM: ribosomal protein S18; KEGG: ccr:CC1668 30S ribosomal protein S18 YP_866367.1 PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: pha:PSHAa2441 primosomal replication protein N YP_866368.1 PFAM: ribosomal protein S6; KEGG: ccr:CC1669 30S ribosomal protein S6 YP_866369.1 PFAM: protein of unknown function DUF152; KEGG: mag:amb0593 hypothetical protein YP_866370.1 PFAM: lytic transglycosylase, catalytic; KEGG: bcl:ABC2523 lytic transglycosylase YP_866371.1 PFAM: NUDIX hydrolase; KEGG: mag:amb4159 NTP pyrophosphohydrolase including oxidative damage repair enzyme YP_866372.1 KEGG: tbd:Tbd_1716 hypothetical protein YP_866373.1 TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: endonuclease/exonuclease/phosphatase; KEGG: bte:BTH_I1847 exodeoxyribonuclease III YP_866374.1 PFAM: TGS domain protein; KEGG: lil:LA3085 GTP pyrophosphokinase YP_866375.1 KEGG: ade:Adeh_1134 hypothetical protein YP_866378.1 KEGG: ddi:DDB0217750 hypothetical protein YP_866379.1 KEGG: atc:AGR_C_3474 hypothetical 25.1 kDa protein in CobV 5'region (orf1) YP_866380.1 PFAM: protein of unknown function DUF540; KEGG: ypk:y1490 cysZ protein YP_866381.1 PFAM: CreA family protein; KEGG: creA; creA protein YP_866382.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: btk:BT9727_1112 O-antigen biosynthesis protein; glycosyltransferase; methyltransferase YP_866383.1 PFAM: response regulator receiver; KEGG: cyb:CYB_0917 response regulator YP_866384.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: dar:Daro_0972 PAS:GGDEF YP_866385.1 PFAM: hypothetical protein; KEGG: pae:PA1975 hypothetical protein YP_866386.1 KEGG: cyb:CYB_0507 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; ATP-binding region, ATPase domain protein domain protein YP_866387.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: pca:Pcar_2307 conserved hypothetical protein/hemolysin YP_866388.1 PFAM: protein of unknown function DUF490; KEGG: rru:Rru_A2098 protein of unknown function DUF490 YP_866389.1 PFAM: surface antigen (D15); KEGG: rru:Rru_A2099 surface antigen YP_866390.1 PFAM: ferric reductase domain protein transmembrane component, N-terminal domain; KEGG: mca:MCA0843 hypothetical protein YP_866391.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ YP_866392.1 TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: nmu:Nmul_A1669 hydrogenase expression/formation protein HypE YP_866393.1 PFAM: hydrogenase formation HypD protein; KEGG: tbd:Tbd_1384 hydrogenase expression/formation protein HypD YP_866394.1 TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein, P47K; KEGG: tbd:Tbd_1383 hydrogenase accessory protein HypB YP_866395.1 TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis, HypA; KEGG: tbd:Tbd_1382 hydrogenase expression/formation protein HypA YP_866396.1 TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: mca:MCA1600 hydrogenase assembly chaperone HypC/HupF YP_866397.1 PFAM: carbonic anhydrase; KEGG: dvu:DVU1777 carbonic anhydrase YP_866398.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: bja:bll7295 hypothetical protein YP_866399.1 PFAM: nickel-dependent hydrogenase, large subunit; KEGG: dar:Daro_3960 nickel-dependent hydrogenase, large subunit YP_866400.1 PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: rfr:Rfer_4120 uptake hydrogenase accessory protein HupU YP_866401.1 KEGG: bja:bll6924 two-component hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_866402.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: ATPase AAA; KEGG: dar:Daro_3962 helix-turn-helix, fis-type YP_866403.1 KEGG: mag:amb1644 Ni,Fe-hydrogenase I large subunit YP_866404.1 KEGG: mag:amb2662 hydrogenase expression/formation protein HupT YP_866406.1 PFAM: protein of unknown function UPF0153; KEGG: nar:Saro_2310 protein of unknown function UPF0153 YP_866407.1 TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: dar:Daro_3985 hydrogenase expression/formation protein (HUPF/HYPC) YP_866408.1 TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52, hydrogen uptake protein; KEGG: eci:UTI89_C3415 hydrogenase 2 maturation protease YP_866409.1 PFAM: nickel-dependent hydrogenase, large subunit; KEGG: mag:amb1647 Ni,Fe-hydrogenase I large subunit YP_866410.1 HybB; cytochrome b subunit of the hydrogenase 2 enzyme, composed of HybA, B, C, and O subunits YP_866411.1 Fe-S ferrodoxin type component; participates in the periplasmic electron-transferring activity of hydrogenase 2 YP_866412.1 KEGG: mag:amb1650 Ni,Fe-hydrogenase I small subunit; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; nickel-iron dehydrogenase small subunit, N-terminal domain protein YP_866413.1 PFAM: HEAT domain containing protein; KEGG: ret:RHE_CH03151 DNA alkylation repair protein YP_866414.1 PFAM: transposase, IS4 family protein; KEGG: gka:GK3116 transposase YP_866416.1 PFAM: acriflavin resistance protein; KEGG: hch:HCH_04032 cation/multidrug efflux pump YP_866417.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: hch:HCH_04033 membrane-fusion protein YP_866418.1 PFAM: regulatory protein, TetR; KEGG: pfl:PFL_1804 TetR family transcriptional regulator YP_866419.1 PFAM: protein of unknown function UPF0016; KEGG: dar:Daro_0933 hypothetical protein YP_866420.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: pol:Bpro_1916 hypothetical protein YP_866421.1 SMART: rhodanese; KEGG: dar:Daro_1790 rhodanese-like YP_866422.1 KEGG: ppu:PP2138 hypothetical protein YP_866423.1 PFAM: rhodanese; KEGG: pca:Pcar_2274 rhodanese-like domain protein YP_866424.1 PFAM: acetyl xylan esterase; KEGG: atc:AGR_C_708 hypothetical protein YP_866425.1 PFAM: esterase; KEGG: atc:AGR_C_710 hypothetical protein YP_866426.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages YP_866427.1 PFAM: protein of unknown function UPF0061; KEGG: noc:Noc_A0019 hypothetical protein YP_866428.1 KEGG: dps:DP0070 hypothetical protein YP_866429.1 PFAM: acriflavin resistance protein; KEGG: sru:SRU_1182 acriflavine resistance protein (cation efflux system) YP_866430.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: eba:ebA7103 HlyD-like secretion protein YP_866431.1 TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: pae:PA2765 iron-dependent peroxidase YP_866432.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; KEGG: cac:CAC2534 HD_GYP hydrolase domain fused to HD hydrolase domain YP_866433.1 PFAM: Di-haem cytochrome C peroxidase; KEGG: rru:Rru_A1789 cytochrome-c peroxidase YP_866434.1 PFAM: response regulator receiver; stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sde:Sde_2179 flagellar basal-body rod protein FlgC YP_866436.1 PFAM: Mg2+ transporter protein, CorA family protein; KEGG: tcx:Tcr_0935 Mg2+ transporter protein, CorA-like YP_866437.1 PFAM: FAD dependent oxidoreductase; KEGG: neu:NE0370 NAD binding site:D-amino acid oxidase YP_866438.1 PFAM: protein of unknown function DUF1255; KEGG: hch:HCH_05068 hypothetical protein YP_866439.1 TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein-like; KEGG: sdn:Sden_1233 alkylphosphonate utilization operon protein PhnA YP_866441.1 KEGG: eba:ebA6727 predicted ABC-type nitrate/sulfonate/bicarbonate transporter protein YP_866442.1 KEGG: dvu:DVU2616 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; hypothetical protein; SMART: PAS domain containing protein YP_866443.1 PFAM: major facilitator superfamily MFS_1; KEGG: dps:DP2747 similar to membrane-bound transporter YP_866444.1 KEGG: cel:Y41C4A.5 Hypothetical protein Y41C4A.5 YP_866447.1 KEGG: pfo:Pfl_3001 DNA topoisomerase III; TIGRFAM: DNA topoisomerase III; PFAM: TOPRIM domain protein; DNA topoisomerase, type IA, central domain protein; DNA topoisomerase, type IA, Zn finger domain protein; SMART: DNA topoisomerase I, ATP-binding; DNA topoisomerase I, DNA-binding; Toprim sub domain protein YP_866448.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: mag:amb1225 TRAP-type C4-dicarboxylate transporter YP_866449.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; histidine kinase, HAMP region domain protein; KEGG: mag:amb1226 adenylate cyclase 1 YP_866450.1 PFAM: BLUF domain protein; KEGG: rpc:RPC_3406 BLUF YP_866451.1 PFAM: Hemolysin-type calcium-binding region; KEGG: mag:amb1268 large exoprotein YP_866452.1 KEGG: rme:Rmet_3364 IstB-like ATP-binding protein YP_866453.1 KEGG: fra:Francci3_2880 conserved hypothetical protein YP_866454.1 PFAM: Integrase, catalytic region; KEGG: mxa:MXAN_1794 transposase YP_866455.1 PFAM: adenylylsulfate kinase; methyltransferase type 11; methyltransferase type 12; KEGG: mst:Msp_0059 hypothetical protein YP_866456.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: cch:Cag_0301 TPR repeat YP_866457.1 PFAM: Integrase, catalytic region; KEGG: lil:LA1768 integrase core domain containing protein YP_866458.1 PFAM: transposase, mutator type; KEGG: nha:Nham_2785 transposase, mutator type YP_866460.1 KEGG: rso:RSc0879 probable transmembrane protein YP_866462.1 KEGG: mca:MCA2675 hypothetical protein YP_866465.1 KEGG: mca:MCA2672 hypothetical protein YP_866466.1 KEGG: rso:RSc0874 probable transmembrane protein YP_866467.1 TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: sao:SAOUHSC_02182 tail length tape measure protein YP_866468.1 PFAM: protein of unknown function DUF891; KEGG: eba:ebD106 hypothetical protein, phage-related YP_866469.1 PFAM: helix-turn-helix domain protein; KEGG: eba:ebD107 phage-like regulator protein YP_866471.1 KEGG: hch:HCH_02903 hypothetical protein YP_866477.1 KEGG: wol:WD0274 hypothetical protein YP_866478.1 KEGG: bxe:Bxe_A3061 phage protein GP19 YP_866479.1 PFAM: peptidase S49; KEGG: rso:RSc0858 probable bacteriophage-related protein YP_866480.1 TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: sat:SYN_02228 DNA -damage-inducible protein J YP_866481.1 TIGRFAM: phage portal protein, lambda family; PFAM: phage portal protein, lambda; KEGG: mca:MCA2660 prophage LambdaMc01, portal protein, lambda family YP_866482.1 KEGG: mag:amb1170 hypothetical protein YP_866483.1 KEGG: pae:PA5269 hypothetical protein YP_866484.1 PFAM: phage terminase GpA; KEGG: bhe:BH03350 phage terminase large subunit (GP15) YP_866486.1 KEGG: mca:MCA2656 hypothetical protein YP_866488.1 PFAM: DNA methylase N-4/N-6 domain protein; ParB domain protein nuclease; KEGG: mag:amb0363 modification methylase DpnIIB YP_866489.1 KEGG: mag:amb1168 hypothetical protein YP_866490.1 KEGG: rba:RB8957 hypothetical protein YP_866491.1 KEGG: dsy:DSY0277 hypothetical protein YP_866492.1 KEGG: gme:Gmet_2039 transposase YP_866494.1 PFAM: glycosyl transferase, group 1 YP_866495.1 KEGG: cte:CT0220 hypothetical protein YP_866496.1 KEGG: eba:c2A230 transposase (fragment) YP_866497.1 PFAM: Integrase, catalytic region; KEGG: gox:GOX2592 transposase YP_866498.1 KEGG: dsy:DSY0277 hypothetical protein YP_866499.1 PFAM: transposase IS66; KEGG: ISPsy5, transposase YP_866500.1 KEGG: rso:RS03910 hypothetical protein YP_866501.1 KEGG: mag:amb0360 hypothetical protein YP_866502.1 KEGG: mag:amb0359 hypothetical protein YP_866503.1 PFAM: TOPRIM domain protein; KEGG: wol:WD0609 regulatory protein RepA YP_866504.1 KEGG: rso:RSc3231 hypothetical protein YP_866505.1 KEGG: jan:Jann_0243 hypothetical protein YP_866506.1 PFAM: MT-A70 family protein; KEGG: nmu:Nmul_A2608 MT-A70 YP_866508.1 PFAM: helicase; type III restriction enzyme, res subunit; DEAD/DEAH box helicase; SMART: DEAD-like helicases-like; KEGG: ana:alr7157 helicase YP_866509.1 KEGG: hch:HCH_05688 hypothetical protein YP_866510.1 KEGG: rso:RSc3235 hypothetical protein YP_866511.1 KEGG: nwi:Nwi_1961 hypothetical protein YP_866512.1 KEGG: dde:Dde_1928 sigma-24 (FecI-like) YP_866515.1 PFAM: protein of unknown function DUF955; KEGG: nwi:Nwi_1262 hypothetical protein YP_866516.1 PFAM: helix-turn-helix domain protein; KEGG: nwi:Nwi_1263 XRE family transcriptional regulator YP_866517.1 KEGG: mag:amb0346 hypothetical protein YP_866518.1 KEGG: mag:amb1200 hypothetical protein YP_866519.1 PFAM: Resolvase, N-terminal domain; Recombinase; KEGG: mag:amb0344 site-specific recombinase YP_866520.1 KEGG: mag:amb0343 hypothetical protein YP_866521.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: bba:Bd0584 two component sensor histidine kinase YP_866522.1 PFAM: transposase IS66; KEGG: ISPsy5, transposase YP_866523.1 PFAM: IS66 Orf2 family protein; KEGG: rme:Rmet_1275 IS66 Orf2 like YP_866525.1 KEGG: dsy:DSY2001 hypothetical protein YP_866526.1 KEGG: fra:Francci3_2696 hypothetical protein YP_866527.1 KEGG: lic:LIC10513 transposase, IS3 YP_866528.1 KEGG: tel:tlr1931 transposase YP_866529.1 KEGG: lic:LIC10513 transposase, IS3 YP_866531.1 PFAM: IS66 Orf2 family protein; KEGG: rme:Rmet_1275 IS66 Orf2 like YP_866532.1 PFAM: transposase IS66; KEGG: ppu:PP3985 ISPpu13, transposase Orf2 YP_866533.1 PFAM: transposase, IS4 family protein; KEGG: dsy:DSY0689 hypothetical protein YP_866534.1 PFAM: transposase IS66; KEGG: ppu:PP3985 ISPpu13, transposase Orf2 YP_866535.1 PFAM: IS66 Orf2 family protein; KEGG: rme:Rmet_1275 IS66 Orf2 like YP_866537.1 PFAM: CheB methylesterase; KEGG: mag:amb3329 hypothetical 1041 kDa protein in HypE 3'region YP_866538.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: aae:aq_035 hypothetical protein YP_866539.1 KEGG: dsy:DSY0277 hypothetical protein YP_866540.1 PFAM: transposase, IS4 family protein; KEGG: dsy:DSY0689 hypothetical protein YP_866541.1 KEGG: dsy:DSY3991 hypothetical protein YP_866542.1 PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: pha:PSHAa0856 glutathione-regulated potassium-efflux system protein ( K(+)/H(+) antiporter) YP_866543.1 KEGG: cvi:CV0841 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; BLUF domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_866544.1 PFAM: response regulator receiver; KEGG: bba:Bd0300 sensory transduction histidine kinase YP_866545.1 PFAM: transposase IS3/IS911 family protein; KEGG: par:Psyc_1688 transposase OrfA, IS3/IS911family YP_866546.1 PFAM: Integrase, catalytic region; KEGG: lpf:lpl1576 hypothetical protein YP_866548.1 KEGG: rha:RHA1_ro08389 transposase YP_866549.1 PFAM: extracellular ligand-binding receptor; KEGG: rpb:RPB_2081 twin-arginine translocation pathway signal YP_866550.1 KEGG: sat:SYN_00226 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein YP_866552.1 PFAM: transposase IS66; KEGG: ISPsy5, transposase YP_866553.1 PFAM: IS66 Orf2 family protein; KEGG: rme:Rmet_1275 IS66 Orf2 like YP_866555.1 PFAM: helicase; type III restriction enzyme, res subunit; DEAD/DEAH box helicase; SMART: DEAD-like helicases-like; KEGG: DNA/RNA helicase YP_866556.1 KEGG: hypothetical protein YP_866557.1 KEGG: mca:MCA2644 hypothetical protein YP_866558.1 KEGG: hch:HCH_05689 hypothetical protein YP_866559.1 KEGG: nwi:Nwi_1961 hypothetical protein YP_866560.1 KEGG: dde:Dde_1928 sigma-24 (FecI-like) YP_866563.1 PFAM: protein of unknown function DUF955; KEGG: nwi:Nwi_1262 hypothetical protein YP_866564.1 PFAM: helix-turn-helix domain protein; KEGG: nwi:Nwi_1263 XRE family transcriptional regulator YP_866565.1 PFAM: transposase IS66; KEGG: ppu:PP3985 ISPpu13, transposase Orf2 YP_866566.1 PFAM: IS66 Orf2 family protein; KEGG: rme:Rmet_1275 IS66 Orf2 like YP_866569.1 KEGG: mag:amb1200 hypothetical protein YP_866570.1 PFAM: Resolvase, N-terminal domain; Recombinase; KEGG: mag:amb0344 site-specific recombinase YP_866571.1 KEGG: mag:amb0343 hypothetical protein YP_866572.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: bba:Bd0584 two component sensor histidine kinase YP_866573.1 PFAM: cytochrome C assembly protein; KEGG: cvi:CV3832 hypothetical protein YP_866574.1 TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: noc:Noc_0854 4-diphosphocytidyl-2C-methyl-D-erythritol synthase YP_866575.1 KEGG: gka:GK0082 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase YP_866577.1 PFAM: DNA polymerase III chi subunit, HolC; KEGG: mag:amb3674 DNA polymerase III chi subunit YP_866578.1 PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: pfo:Pfl_0989 peptidase M17, leucyl aminopeptidase-like YP_866579.1 PFAM: permease YjgP/YjgQ family protein; KEGG: sat:SYN_00414 permease YP_866580.1 PFAM: permease YjgP/YjgQ family protein; KEGG: sit:TM1040_0948 permease YjgP/YjgQ YP_866581.1 KEGG: hhe:HH1649 hypothetical protein YP_866582.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; ion transport 2 domain protein,; KEGG: aae:aq_303 hypothetical protein YP_866583.1 PFAM: protein of unknown function DUF502; KEGG: pca:Pcar_1826 hypothetical protein YP_866584.1 PFAM: phosphoglycerate mutase YP_866585.1 KEGG: pca:Pcar_0582 hypothetical protein YP_866586.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bbr:BB3321 acetyltransferase YP_866587.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; TPR repeat-containing protein; SMART: hypothetical protein; KEGG: bja:bll5958 hypothetical protein YP_866589.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: sil:SPO1189 hypothetical protein YP_866590.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: pae:PA5350 rubredoxin 2 YP_866592.1 PFAM: cytochrome B561; KEGG: cvi:CV3071 probable hydrogenase cytochrome b-type subunit YP_866593.1 PFAM: response regulator receiver; KEGG: pfl:PFL_4997 DNA-binding response regulator YP_866594.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: extracellular solute-binding protein, family 3; KEGG: hch:HCH_00309 signal transduction histidine kinase YP_866595.1 PFAM: response regulator receiver; KEGG: vvy:VVA0633 signal transduction histidine kinase YP_866596.1 TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: Haemagluttinin repeat-containing protein; filamentous haemagglutinin domain protein; KEGG: dps:DP1520 hypothetical protein YP_866597.1 PFAM: polypeptide-transport-associated domain protein, ShlB-type; KEGG: pfl:PFL_1466 hemolysin activator protein, HlyB family YP_866598.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: nha:Nham_3913 IstB-like ATP-binding protein YP_866599.1 KEGG: fra:Francci3_2880 conserved hypothetical protein YP_866600.1 KEGG: fra:Francci3_2696 hypothetical protein YP_866601.1 KEGG: lic:LIC10513 transposase, IS3 YP_866602.1 KEGG: tel:tlr1931 transposase YP_866604.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron, maturase-specific domain protein; KEGG: plt:Plut_1820 RNA-directed DNA polymerase YP_866605.1 KEGG: fra:Francci3_0419 integrase YP_866606.1 KEGG: sme:SMa1784 hypothetical protein YP_866607.1 KEGG: gvi:glr3346 hypothetical protein YP_866608.1 PFAM: sigma-54 factor, interaction domain-containing protein; Helix-turn-helix, type 11 domain protein; SMART: ATPase AAA; KEGG: xoo:XOO4202 two-component system regulatory protein YP_866609.1 KEGG: bca:BCE0996 hypothetical protein YP_866611.1 KEGG: dsy:DSY0277 hypothetical protein YP_866612.1 PFAM: response regulator receiver; KEGG: pca:Pcar_2629 response regulator receiver domain protein (CheY-like) YP_866613.1 PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: bca:BCE2662 hypothetical protein YP_866614.1 KEGG: plu:plu4903 hypothetical protein YP_866615.1 KEGG: nar:Saro_2176 hypothetical protein YP_866616.1 KEGG: bpe:BP1345 hypothetical protein YP_866617.1 PFAM: SNF2-related protein; helicase; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: mca:MCA3005 ATP-dependent RNA helicase, DEAD/DEAH box family YP_866618.1 PFAM: protein of unknown function DUF1156; KEGG: noc:Noc_0655 protein of unknown function DUF1156 YP_866619.1 KEGG: noc:Noc_0654 hypothetical protein YP_866620.1 PFAM: IstB domain protein ATP-binding protein; KEGG: rpc:RPC_3057 IstB-like ATP-binding protein YP_866621.1 PFAM: Integrase, catalytic region; KEGG: rso:RSp0548 ISRSO8-transposase orfB protein YP_866622.1 PFAM: transposase IS200-family protein; KEGG: ppr:PBPRB1783 hypothetical transposase YP_866623.1 KEGG: dsy:DSY0277 hypothetical protein YP_866625.1 KEGG: rso:RSc0879 probable transmembrane protein YP_866630.1 KEGG: mca:MCA2672 hypothetical protein YP_866631.1 KEGG: rso:RSc0874 probable transmembrane protein YP_866632.1 TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: sao:SAOUHSC_02182 tail length tape measure protein YP_866633.1 PFAM: protein of unknown function DUF891; KEGG: eba:ebD106 hypothetical protein, phage-related YP_866634.1 PFAM: helix-turn-helix domain protein; KEGG: eba:ebD107 phage-like regulator protein YP_866636.1 KEGG: hch:HCH_02903 hypothetical protein YP_866642.1 KEGG: wol:WD0274 hypothetical protein YP_866643.1 KEGG: bxe:Bxe_A3061 phage protein GP19 YP_866644.1 PFAM: peptidase S49; KEGG: rso:RSc0858 probable bacteriophage-related protein YP_866645.1 TIGRFAM: phage portal protein, lambda family; PFAM: phage portal protein, lambda; KEGG: mca:MCA2660 prophage LambdaMc01, portal protein, lambda family YP_866646.1 KEGG: mag:amb1170 hypothetical protein YP_866647.1 PFAM: phage terminase GpA; KEGG: bhe:BH03350 phage terminase large subunit (GP15) YP_866650.1 KEGG: mca:MCA2656 hypothetical protein YP_866652.1 PFAM: DNA methylase N-4/N-6 domain protein; ParB domain protein nuclease; KEGG: mag:amb0363 modification methylase DpnIIB YP_866653.1 KEGG: mag:amb0371 hypothetical protein YP_866654.1 SMART: HNH nuclease; KEGG: pca:Pcar_2805 hypothetical protein YP_866655.1 TIGRFAM: addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: rru:Rru_A2377 predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain YP_866656.1 PFAM: plasmid stabilization system; KEGG: rru:Rru_A2376 hypothetical protein YP_866657.1 KEGG: aba:acid345_3187 hypothetical protein YP_866660.1 PFAM: histone family protein DNA-binding protein; KEGG: mag:amb4004 bacterial nucleoid DNA-binding protein YP_866661.1 PFAM: peptidase M15A; KEGG: sil:SPO3675 hypothetical protein YP_866662.1 KEGG: rso:RS03910 hypothetical protein YP_866663.1 KEGG: mag:amb0360 hypothetical protein YP_866664.1 KEGG: rso:RSc3228 bacteriophage-related protein YP_866665.1 PFAM: TOPRIM domain protein; KEGG: wol:WD0609 regulatory protein RepA YP_866666.1 KEGG: rso:RSc3231 hypothetical protein YP_866667.1 KEGG: sfx:S1991 hypothetical bacteriophage protein YP_866668.1 KEGG: rso:RSc3233 hypothetical protein YP_866669.1 PFAM: helicase; type III restriction enzyme, res subunit; DEAD/DEAH box helicase; SMART: DEAD-like helicases-like; KEGG: DNA/RNA helicase YP_866670.1 KEGG: mca:MCA2644 hypothetical protein YP_866671.1 KEGG: hch:HCH_05689 hypothetical protein YP_866672.1 KEGG: nwi:Nwi_1961 hypothetical protein YP_866674.1 PFAM: helix-turn-helix domain protein; peptidase S24, S26A and S26B; KEGG: son:SO0641 prophage MuSo1, transcriptional regulator, Cro/CI family YP_866675.1 KEGG: mag:amb1200 hypothetical protein YP_866676.1 PFAM: Resolvase, N-terminal domain; Recombinase; KEGG: mag:amb0344 site-specific recombinase YP_866677.1 KEGG: mag:amb0343 hypothetical protein YP_866679.1 PFAM: SEC-C motif domain protein; KEGG: hch:HCH_00244 hypothetical protein YP_866680.1 KEGG: fra:Francci3_2880 conserved hypothetical protein YP_866681.1 PFAM: Integrase, catalytic region; KEGG: mxa:MXAN_1794 transposase YP_866682.1 KEGG: pcu:pc0902 hypothetical protein YP_866683.1 KEGG: neu:NE1553 transposase YP_866684.1 KEGG: fra:Francci3_2880 conserved hypothetical protein YP_866685.1 KEGG: fra:Francci3_2696 hypothetical protein YP_866686.1 KEGG: lil:LA1768 integrase core domain containing protein YP_866687.1 PFAM: protein of unknown function DUF323; KEGG: dps:DP2422 hypothetical protein YP_866688.1 PFAM: transposase, IS4 family protein; KEGG: bte:BTH_II0087 transposase YP_866689.1 KEGG: dps:DP0590 periplasmic protein YP_866690.1 KEGG: dps:DP0589 hypothetical protein YP_866691.1 KEGG: plt:Plut_0084 hypothetical protein YP_866692.1 KEGG: mma:MM2238 hypothetical protein YP_866693.1 PFAM: sporulation domain protein; KEGG: plt:Plut_0082 hypothetical protein YP_866694.1 PFAM: transposase IS66; KEGG: mxa:MXAN_4128 transposase, unclassified family YP_866697.1 KEGG: mca:MCA2676 hypothetical protein YP_866702.1 KEGG: mca:MCA2672 hypothetical protein YP_866703.1 KEGG: rso:RSc0874 probable transmembrane protein YP_866704.1 TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: sao:SAOUHSC_02182 tail length tape measure protein YP_866705.1 KEGG: hch:HCH_04219 hypothetical protein YP_866707.1 KEGG: hch:HCH_02903 hypothetical protein YP_866713.1 KEGG: wol:WD0274 hypothetical protein YP_866714.1 KEGG: bxe:Bxe_A3061 phage protein GP19 YP_866715.1 PFAM: peptidase S49; KEGG: rso:RSc0858 probable bacteriophage-related protein YP_866716.1 PFAM: response regulator receiver; KEGG: dde:Dde_1018 response regulator receiver domain protein (CheY-like) YP_866717.1 TIGRFAM: phage portal protein, lambda family; PFAM: phage portal protein, lambda; KEGG: mca:MCA2660 prophage LambdaMc01, portal protein, lambda family YP_866718.1 KEGG: mag:amb1170 hypothetical protein YP_866719.1 PFAM: phage terminase GpA; KEGG: bhe:BH03350 phage terminase large subunit (GP15) YP_866722.1 KEGG: mca:MCA2656 hypothetical protein YP_866723.1 PFAM: histone family protein DNA-binding protein; KEGG: mag:amb2023 bacterial nucleoid DNA-binding protein YP_866724.1 PFAM: DNA methylase N-4/N-6 domain protein; ParB domain protein nuclease; KEGG: mag:amb0363 modification methylase DpnIIB YP_866725.1 KEGG: mag:amb1168 hypothetical protein YP_866726.1 SMART: HNH nuclease; KEGG: pca:Pcar_2805 hypothetical protein YP_866727.1 TIGRFAM: addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: rru:Rru_A2377 predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain YP_866728.1 PFAM: plasmid stabilization system; KEGG: rru:Rru_A2376 hypothetical protein YP_866729.1 KEGG: aba:acid345_3187 hypothetical protein YP_866732.1 PFAM: peptidase M15A; KEGG: sil:SPO3675 hypothetical protein YP_866733.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: hemerythrin HHE cation binding domain protein; KEGG: ctc:CTC02359 hemerythrin-like domain protein DcrH YP_866734.1 PFAM: endonuclease I; KEGG: pfo:Pfl_1915 deoxyribonuclease I YP_866735.1 KEGG: dsy:DSY3991 hypothetical protein YP_866736.1 TIGRFAM: integration host factor, subunit alpha; PFAM: histone family protein DNA-binding protein; KEGG: ade:Adeh_1969 integration host factor, subunit alpha YP_866737.1 KEGG: mag:amb0361 hypothetical protein YP_866738.1 KEGG: mag:amb0360 hypothetical protein YP_866739.1 KEGG: mag:amb0359 hypothetical protein YP_866740.1 PFAM: TOPRIM domain protein; KEGG: wol:WD0609 regulatory protein RepA YP_866741.1 KEGG: rso:RSc3231 hypothetical protein YP_866742.1 KEGG: sfx:S1991 hypothetical bacteriophage protein YP_866744.1 PFAM: helicase; type III restriction enzyme, res subunit; DEAD/DEAH box helicase; SMART: DEAD-like helicases-like; KEGG: DNA/RNA helicase YP_866745.1 KEGG: hypothetical protein YP_866746.1 KEGG: mca:MCA2644 hypothetical protein YP_866747.1 KEGG: hch:HCH_05689 hypothetical protein YP_866748.1 KEGG: nwi:Nwi_1961 hypothetical protein YP_866749.1 KEGG: dde:Dde_1928 sigma-24 (FecI-like) YP_866752.1 PFAM: protein of unknown function DUF955; KEGG: nwi:Nwi_1262 hypothetical protein YP_866753.1 PFAM: helix-turn-helix domain protein; KEGG: nwi:Nwi_1263 XRE family transcriptional regulator YP_866754.1 KEGG: mag:amb0346 hypothetical protein YP_866755.1 KEGG: mag:amb1200 hypothetical protein YP_866756.1 PFAM: Resolvase, N-terminal domain; Recombinase; KEGG: mag:amb0344 site-specific recombinase YP_866757.1 KEGG: mag:amb0343 hypothetical protein YP_866758.1 TIGRFAM: yecA family protein; PFAM: SEC-C motif domain protein; KEGG: rpd:RPD_2224 YgfB and YecA YP_866759.1 KEGG: pol:Bpro_4806 phage integrase YP_866760.1 PFAM: phage integrase family protein; KEGG: vvy:VVA1570 integrase YP_866761.1 PFAM: transposase; KEGG: eba:p2A174 transposase YP_866762.1 KEGG: fra:Francci3_2880 conserved hypothetical protein YP_866763.1 PFAM: Integrase, catalytic region; KEGG: lil:LA1768 integrase core domain containing protein YP_866764.1 PFAM: glycosyl transferase, family 39; KEGG: pmt:PMT1982 dolichyl-phosphate-mannose-protein mannosyltransferase YP_866765.1 KEGG: eba:c2A230 transposase (fragment) YP_866766.1 PFAM: transposase IS66; KEGG: mxa:MXAN_4128 transposase, unclassified family YP_866767.1 PFAM: glycosyl transferase, family 2; KEGG: ava:Ava_3351 glycosyl transferase, family 2 YP_866769.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility C-terminal domain; KEGG: dge:Dgeo_2646 NAD-dependent epimerase/dehydratase YP_866770.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: mag:amb3785 nucleoside-diphosphate-sugar epimerase YP_866772.1 KEGG: rso:RSc0879 probable transmembrane protein YP_866777.1 KEGG: sdn:Sden_3241 hypothetical protein YP_866778.1 KEGG: rso:RSc0874 probable transmembrane protein YP_866779.1 TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: eca:ECA2605 bacteriophage tail fiber protein T (tape measure) YP_866780.1 KEGG: gvi:glr1124 hypothetical protein YP_866781.1 KEGG: gvi:gsr1125 hypothetical protein YP_866783.1 KEGG: hch:HCH_02903 hypothetical protein YP_866789.1 KEGG: wol:WD0274 hypothetical protein YP_866790.1 KEGG: bxe:Bxe_A3061 phage protein GP19 YP_866791.1 PFAM: peptidase S49; KEGG: rso:RSc0858 probable bacteriophage-related protein YP_866792.1 PFAM: plasmid maintenance system killer; KEGG: dvu:DVU1729 killer protein YP_866793.1 TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: mag:amb0660 plasmid maintenance system antidote protein YP_866794.1 TIGRFAM: phage portal protein, lambda family; PFAM: phage portal protein, lambda; KEGG: mca:MCA2660 prophage LambdaMc01, portal protein, lambda family YP_866795.1 KEGG: mag:amb1170 hypothetical protein YP_866796.1 PFAM: phage terminase GpA; KEGG: bhe:BH03350 phage terminase large subunit (GP15) YP_866797.1 KEGG: wol:WD0264 hypothetical protein YP_866799.1 KEGG: mag:amb1166 hypothetical protein YP_866800.1 PFAM: histone family protein DNA-binding protein; KEGG: oih:OB1792 non-specific DNA-binding protein YP_866801.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: sdy:SDY_4347 cold shock protein 7.4 YP_866802.1 PFAM: DNA methylase N-4/N-6 domain protein; ParB domain protein nuclease; KEGG: mag:amb1160 modification methylase DpnIIB YP_866803.1 KEGG: rba:RB8957 hypothetical protein YP_866804.1 KEGG: aba:acid345_3187 hypothetical protein YP_866807.1 PFAM: histone family protein DNA-binding protein; KEGG: gox:GOX0133 integration host factor beta-subunit YP_866808.1 PFAM: peptidase M15A; KEGG: sil:SPO3675 hypothetical protein YP_866809.1 KEGG: rso:RS03910 hypothetical protein YP_866810.1 KEGG: mag:amb0360 hypothetical protein YP_866811.1 KEGG: mag:amb0359 hypothetical protein YP_866812.1 KEGG: mag:amb0358 hypothetical protein YP_866813.1 KEGG: mag:amb0357 hypothetical protein YP_866814.1 PFAM: helicase; type III restriction enzyme, res subunit; DEAD/DEAH box helicase; SMART: DEAD-like helicases-like; KEGG: mag:amb0356 DNA or RNA helicase of superfamily II YP_866815.1 KEGG: mag:amb0355 hypothetical protein YP_866816.1 KEGG: mag:amb0354 hypothetical protein YP_866817.1 KEGG: mag:amb0353 hypothetical protein YP_866818.1 KEGG: mag:amb0352 hypothetical protein YP_866819.1 KEGG: nwi:Nwi_1961 hypothetical protein YP_866821.1 PFAM: helix-turn-helix domain protein; peptidase S24, S26A and S26B; KEGG: son:SO0641 prophage MuSo1, transcriptional regulator, Cro/CI family YP_866822.1 KEGG: mag:amb1200 hypothetical protein YP_866823.1 PFAM: Resolvase, N-terminal domain; Recombinase; KEGG: mag:amb0344 site-specific recombinase YP_866824.1 KEGG: mag:amb0343 hypothetical protein YP_866825.1 PFAM: plasmid pRiA4b ORF-3 family protein; KEGG: mac:MA1921 hypothetical protein YP_866826.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; KEGG: ppu:PP5147 hydrolase, haloacid dehalogenase-like family YP_866828.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: mag:amb3690 methyl-accepting chemotaxis protein YP_866829.1 SMART: HNH nuclease; KEGG: bba:Bd2878 hypothetical protein YP_866830.1 TIGRFAM: glycine oxidase ThiO; PFAM: FAD dependent oxidoreductase; KEGG: ade:Adeh_0139 glycine oxidase ThiO YP_866831.1 PFAM: GCN5-related N-acetyltransferase; KEGG: hch:HCH_01030 amino-acid N-acetyltransferase YP_866832.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: chemotaxis sensory transducer; hemerythrin HHE cation binding domain protein; KEGG: dps:DP2258 similar to methyl-accepting chemotaxis protein YP_866833.1 PFAM: peptidase M16 domain protein; peptidase M16C associated domain protein; KEGG: noc:Noc_2076 peptidase M16-like YP_866834.1 PFAM: major facilitator superfamily MFS_1; KEGG: mag:amb4488 permease of the major facilitator superfamily YP_866835.1 PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: mag:amb4534 imidazoleglycerol-phosphate dehydratase YP_866836.1 TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I; CobB/CobQ domain protein glutamine amidotransferase; KEGG: bxe:Bxe_A0402 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit YP_866837.1 KEGG: dps:DP0388 hypothetical protein YP_866838.1 KEGG: dps:DP0387 hypothetical protein YP_866839.1 KEGG: wsu:WS1436 two-component sensor; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: PAS domain containing protein YP_866840.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: wsu:WS0344 GGDEF domain protein YP_866841.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; KEGG: psp:PSPPH_1043 HDIG domain protein YP_866842.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: son:SO0860 response regulator YP_866843.1 KEGG: rru:Rru_A2361 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_866844.1 PFAM: Di-haem cytochrome C peroxidase; KEGG: pol:Bpro_4821 cytochrome-c peroxidase YP_866845.1 KEGG: dsy:DSY4239 hypothetical protein YP_866846.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: pae:PA1159 probable cold-shock protein YP_866847.1 PFAM: Desulfoferrodoxin, ferrous iron-binding region; KEGG: tdn:Tmden_0990 hypothetical protein YP_866848.1 KEGG: gme:Gmet_1707 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_866849.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: mag:amb3054 methyl-accepting chemotaxis protein YP_866850.1 KEGG: mca:MCA1204 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_866851.1 PFAM: hypothetical protein; KEGG: dar:Daro_4141 hypothetical protein YP_866852.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: tbd:Tbd_1268 multi-sensor hybrid histidine kinase YP_866853.1 PFAM: response regulator receiver; stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: pae:PA3346 probable two-component response regulator YP_866854.1 PFAM: sulfate transporter/antisigma-factor antagonist STAS; KEGG: pae:PA3347 hypothetical protein YP_866855.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: eba:ebA2966 LysR family transcriptional regulator YP_866857.1 KEGG: rru:Rru_A1207 exopolyphosphatase-related protein YP_866858.1 TIGRFAM: molybdenum ABC transporter periplasmic molybdate-binding protein; KEGG: ppr:PBPRB1349 hypothetical molybdenum ABC transporterperiplasmic molybdenum-binding protein YP_866859.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: mag:amb1111 signal transduction histidine kinase YP_866860.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mag:amb1667 Fe-S oxidoreductase YP_866861.1 PFAM: alpha/beta hydrolase fold; KEGG: bba:Bd3462 hydrolase YP_866862.1 TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: rru:Rru_A1928 yeast 2-isopropylmalate synthase YP_866863.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: mlo:mlr3966 arsenate reductase YP_866864.1 PFAM: peptidase M48, Ste24p; KEGG: dar:Daro_0246 peptidase M48, Ste24p YP_866865.1 PFAM: pseudouridine synthase; KEGG: rpc:RPC_0213 pseudouridine synthase YP_866866.1 PFAM: regulatory protein, ArsR; KEGG: pfl:PFL_2186 arsenic resistance transcriptional regulator YP_866867.1 KEGG: son:SO0538 glyceraldehyde 3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_866868.1 PFAM: major facilitator superfamily MFS_1; KEGG: vvu:VV11143 permease of the major facilitator superfamily YP_866869.1 KEGG: neu:NE1700 diguanylate cyclase/phosphodiesterase domain 2 (EAL); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_866870.1 KEGG: tdn:Tmden_0965 cache sensor signal transduction histidine kinase; TIGRFAM: diguanylate cyclase; PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; SMART: GGDEF domain containing protein YP_866871.1 PFAM: TM1410 hypothetical-related protein; KEGG: nar:Saro_1621 signal peptide protein YP_866872.1 KEGG: rso:RSc3137 hypothetical protein YP_866873.1 KEGG: eba:ebA900 predicted N-acetylglucosaminyl transferase YP_866874.1 KEGG: rpd:RPD_0476 OmpA/MotB YP_866875.1 KEGG: pfl:PFL_2974 lipoprotein YP_866876.1 KEGG: nar:Saro_1624 hypothetical protein YP_866878.1 PFAM: glycosyl transferase, group 1; KEGG: nar:Saro_1626 glycosyl transferase, group 1 YP_866879.1 KEGG: nmu:Nmul_A2433 hypothetical protein YP_866880.1 KEGG: cyb:CYB_1293 macrocin-O-methyltransferase domain protein YP_866882.1 PFAM: sulfotransferase; hypothetical protein; hypothetical protein; hypothetical protein; SMART: hypothetical protein; KEGG: rpc:RPC_3120 TPR repeat YP_866883.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD; KEGG: mag:amb3159 membrane-fusion protein YP_866884.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: mag:amb3158 protease secretion ATP-binding protein PrtD YP_866885.1 PFAM: Hemolysin-type calcium-binding region; KEGG: spn:SP1772 cell wall surface anchor family protein YP_866886.1 PFAM: Hemolysin-type calcium-binding region; KEGG: spn:SP1772 cell wall surface anchor family protein YP_866887.1 PFAM: outer membrane efflux protein; KEGG: mag:amb3157 outer membrane protein YP_866889.1 PFAM: nucleoside diphosphate kinase; KEGG: mca:MCA2886 nucleoside diphosphate kinase YP_866890.1 TIGRFAM:radical SAM protein; PFAM: radical SAM domain protein; KEGG: rpd:RPD_0709 hypothetical protein YP_866891.1 KEGG: tcx:Tcr_0450 hypothetical protein YP_866892.1 PFAM: cytochrome C, class I; KEGG: pfo:Pfl_2741 cytochrome c, class I YP_866893.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cch:Cag_2004 sulfide dehydrogenase, flavoprotein subunit YP_866894.1 KEGG: rpa:RPA4467 sulfur oxidation protein SoxY YP_866895.1 KEGG: aae:aq_1809 hypothetical protein YP_866896.1 KEGG: lpl:lp_2541 ABC transporter substrate binding protein YP_866897.1 KEGG: bba:Bd0300 sensory transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; GAF domain protein YP_866898.1 PFAM: toluene tolerance family protein; KEGG: sat:SYN_01265 toluene tolerance protein YP_866899.1 PFAM: VacJ family lipoprotein; KEGG: pca:Pcar_0450 surface lipoprotein-like YP_866900.1 KEGG: dar:Daro_3162 lipoprotein YP_866901.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: mfa:Mfla_0499 tetratricopeptide TPR_2 YP_866902.1 KEGG: nmu:Nmul_A1883 ErfK/YbiS/YcfS/YnhG YP_866903.1 PFAM: NUDIX hydrolase; KEGG: sth:STH2884 MutT-like protein YP_866905.1 PFAM: NUDIX hydrolase; KEGG: sat:SYN_02072 MutT/NUDIX family protein YP_866906.1 TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; KEGG: sco:SCO2902 HAM1 protein YP_866907.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: aae:aq_231 histidine kinase sensor protein YP_866908.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; KEGG: chy:CHY_1855 sigma-54 dependent transcriptional regulator/response regulator YP_866909.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mag:amb0729 predicted signal transduction protein YP_866911.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_866912.1 KEGG: mfa:Mfla_1141 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase YP_866913.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: pfo:Pfl_0771 ribosomal RNA methyltransferase RrmJ/FtsJ YP_866914.1 TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: mlo:mll2568 transcriptional elongation factor YP_866915.1 TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; protein of unknown function DUF201; carbamoyl-phosphate synthase L chain, ATP-binding; carbamoyl-phosphate synthetase large chain, oligomerisation; carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: bbr:BB1447 carbamoyl-phosphate synthase large chain YP_866916.1 TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; carbamoyl-phosphate synthase, small chain; KEGG: pca:Pcar_1613 carbamoyl-phosphate synthase small subunit YP_866917.1 PFAM: PDZ/DHR/GLGF domain protein; KEGG: rso:RSc1058 probable periplasmic protease signal peptide protein YP_866918.1 PFAM: sugar fermentation stimulation protein; KEGG: mag:amb1604 DNA-binding protein YP_866919.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: lpp:lpp1684 methionyl aminopeptidase YP_866920.1 PFAM: response regulator receiver; stage II sporulation E family protein; KEGG: pae:PA3346 probable two-component response regulator YP_866921.1 KEGG: ttj:TTHA1962 6-phosphofructokinase; TIGRFAM: 6-phosphofructokinase; PFAM: phosphofructokinase YP_866922.1 KEGG: rfr:Rfer_0059 hypothetical protein YP_866923.1 PFAM: response regulator receiver; KEGG: tcx:Tcr_1040 response regulator receiver sensor signal transduction histidine kinase YP_866924.1 PFAM: type IV pilus assembly PilZ; KEGG: dps:DP0663 hypothetical protein YP_866925.1 PFAM: response regulator receiver; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: tcx:Tcr_1040 response regulator receiver sensor signal transduction histidine kinase YP_866926.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; response regulator receiver; KEGG: lic:LIC20094 adenylate/guanylate cyclase YP_866927.1 KEGG: gme:Gmet_1083 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_866928.1 KEGG: gsu:GSU2314 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_866930.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: tel:tlr1953 hypothetical protein YP_866931.1 KEGG: pca:Pcar_1105 related to flagellar biosynthetic protein (FlhB) YP_866934.1 TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: lic:LIC11380 RNA polymerase sigma-28 factor YP_866935.1 PFAM: cobyrinic acid a,c-diamide synthase; KEGG: sat:SYN_02828 flagellar synthesis regulator YP_866936.1 PFAM: GTP-binding signal recognition particle SRP54, G- domain; SMART: ATPase AAA; KEGG: sth:STH2986 flagellar GTP-binding protein YP_866937.1 TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: gsu:GSU3056 flagellar biosynthetic protein FlhA YP_866939.1 PFAM: membrane bound O-acyl transferase, MBOAT family protein; KEGG: ppu:PP1280 alginate O-acetylation protein AlgI YP_866940.1 PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: eba:ebA1383 MFS permease YP_866941.1 PFAM: major facilitator superfamily MFS_1; KEGG: sme:SMa1641 probable NreB protein YP_866942.1 PFAM: methyltransferase type 12 YP_866944.1 KEGG: rpc:RPC_1203 dipeptidyl aminopeptidases/acylaminoacyl-peptidases-like YP_866945.1 PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: ppr:PBPRB1236 hypothetical protein YP_866947.1 KEGG: pca:Pcar_0279 hypothetical protein YP_866948.1 KEGG: rfr:Rfer_3046 transcriptional factor YP_866950.1 PFAM: transposase, IS4 family protein; KEGG: eba:p1B277 hypothetical protein, probable transposase YP_866951.1 KEGG: hch:HCH_03574 hypothetical protein YP_866952.1 KEGG: hch:HCH_04116 hypothetical protein YP_866953.1 PFAM: protein of unknown function DUF528; KEGG: dar:Daro_1956 protein of unknown function DUF528 YP_866954.1 PFAM: ferredoxin; KEGG: mag:amb3023 ferredoxin YP_866955.1 TIGRFAM: Fe-S protein assembly chaperone HscA; PFAM: heat shock protein 70; KEGG: vvy:VV0759 hSP70 molecular chaperone HscA YP_866956.1 TIGRFAM: co-chaperone Hsc20; PFAM: heat shock protein DnaJ domain protein; HSCB oligomerisation domain protein; KEGG: ade:Adeh_0595 co-chaperone Hsc20 YP_866957.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: msu:MS1723 IscA protein YP_866958.1 TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: mca:MCA0248 NifU family protein YP_866959.1 TIGRFAM: cysteine desulfurase IscS; PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mag:amb3028 cysteine sulfinate desulfinase/cysteine desulfurase and related enzyme YP_866960.1 PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: noc:Noc_1649 aminotransferase, class V YP_866961.1 TIGRFAM: transcriptional regulator, Rrf2 family; iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; KEGG: nmu:Nmul_A0674 transcriptional regulator, BadM/Rrf2 family YP_866962.1 TIGRFAM: serine O-acetyltransferase; KEGG: pca:Pcar_1862 serine acetyltransferase YP_866966.1 KEGG: pae:PA3347 hypothetical protein YP_866967.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-3 domain protein; KEGG: mag:amb1841 hypothetical protein YP_866968.1 PFAM: response regulator receiver; stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: hch:HCH_05185 response regulator containing a CheY-like receiver domain and a GGDEF domain YP_866969.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: mag:amb1840 response regulator containing a CheY-like receiver domain and an HD-GYP domain YP_866970.1 KEGG: pfo:Pfl_0128 hypothetical protein YP_866971.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: noc:Noc_2801 divalent cation transporter YP_866972.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: bba:Bd0300 sensory transduction histidine kinase YP_866974.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: mag:amb2807 RNA polymerase sigma-32 factor YP_866975.1 PFAM: heat shock protein Hsp20; KEGG: gme:Gmet_2986 heat shock protein HSP20 YP_866976.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: sat:SYN_02432 cold shock protein YP_866977.1 KEGG: dvu:DVU2710 hypothetical protein YP_866980.1 The second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione YP_866981.1 PFAM: protein of unknown function DUF1704; KEGG: sme:SMb21585 hypothetical protein YP_866982.1 KEGG: sme:SMb21584 hypothetical protein YP_866984.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2202 LysR family transcriptional regulator YP_866985.1 PFAM: thioesterase superfamily protein; KEGG: sil:SPO0440 thioesterase family protein YP_866987.1 PFAM: glycosyl transferase, group 1; KEGG: msu:MS1496 RfaG protein YP_866988.1 PFAM: ExsB family protein; PP-loop domain protein; KEGG: eli:ELI_13315 LPS biosynthesis protein WbpG YP_866989.1 PFAM: carbon storage regulator; KEGG: cbu:CBU_1050 carbon storage regulator YP_866991.1 PFAM: anti-sigma-28 factor, FlgM family protein; KEGG: dde:Dde_0638 anti-sigma-28 factor, FlgM YP_866992.1 KEGG: gme:Gmet_0435 flagellar protein FlgJ-like protein YP_866993.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum YP_866994.1 PFAM: flagellar L-ring protein; KEGG: pca:Pcar_1154 related to flagellar L-ring protein precursor (FlgH) YP_866995.1 KEGG: gme:Gmet_0432 flageller protein FlgA YP_866996.1 TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: gsu:GSU3051 flagellar basal-body rod protein FlgG YP_866997.1 PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: lip:LI0740 flagellar basal body rod protein YP_866998.1 TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: pae:PA0935 MazG protein YP_866999.1 PFAM: sulfate transporter/antisigma-factor antagonist STAS YP_867000.1 PFAM: invasion associated locus B family protein; KEGG: ret:RHE_CH00951 hypothetical protein YP_867001.1 PFAM: protein of unknown function DUF839; KEGG: rru:Rru_A3006 protein of unknown function DUF839 YP_867005.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: type IV pilus assembly PilZ; KEGG: ade:Adeh_0219 hemerythrin-like, metal-binding protein YP_867006.1 PFAM: protein of unknown function DUF159; KEGG: gvi:gll2498 hypothetical protein YP_867008.1 KEGG: mmu:13067 cytochrome C, testis YP_867010.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: noc:Noc_1273 ABC transporter ATPase YP_867013.1 PFAM: protein of unknown function DUF328; KEGG: pae:PA3539 hypothetical protein YP_867015.1 KEGG: rpb:RPB_4128 adenylate/guanylate cyclase YP_867017.1 KEGG: sth:STH1622 hypothetical protein YP_867018.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: rpb:RPB_1549 hypothetical protein YP_867020.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: cvi:CV0368 hypothetical protein YP_867022.1 PFAM: aminotransferase, class I and II; KEGG: xac:XAC3189 cobalamin biosynthetic protein YP_867023.1 TIGRFAM: cobyric acid synthase CobQ; PFAM: cobyrinic acid a,c-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: xcb:XC_1097 cobyric acid synthase YP_867024.1 TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: mca:MCA2293 precorrin-3B C17-methyltransferase/conserved domain protein YP_867025.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: dar:Daro_1686 cobalamin (vitamin B12) biosynthesis CbiG protein YP_867026.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: pol:Bpro_2773 cobalamin (vitamin B12) biosynthesis CbiG protein YP_867027.1 TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dar:Daro_1688 precorrin-2 C20-methyltransferase YP_867028.1 TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; KEGG: mca:MCA2296 precorrin-6Y C5,15-methyltransferase (decarboxylating) YP_867029.1 Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A YP_867030.1 PFAM: precorrin-8X methylmutase CbiC/CobH; KEGG: mca:MCA2298 precorrin-8X methylmutase YP_867031.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: mca:MCA2299 CbiX protein YP_867032.1 TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: mca:MCA2300 precorrin-4 C11-methyltransferase YP_867033.1 PFAM: cobyrinic acid a,c-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: mca:MCA2290 cobyrinic acid a,c-diamide synthase YP_867034.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: mag:amb4338 ABC-type cobalt transporter, ATPase component YP_867035.1 TIGRFAM: cobalt ABC transporter inner membrane subunit CbiQ; PFAM: cobalt transporter; KEGG: mag:amb4337 ABC-type cobalt transporter, permease CbiQ and related transporters YP_867036.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: rpc:RPC_1959 cobalamin (vitamin B12) biosynthesis CbiM protein YP_867037.1 KEGG: rpc:RPC_1958 hypothetical protein YP_867038.1 PFAM: Forkhead-associated protein; adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: reu:Reut_B4853 adenylyl cyclase class-3/4/guanylyl cyclase YP_867039.1 SMART: protein phosphatase 2C domain protein; KEGG: ade:Adeh_3691 serine/threonine phosphatase YP_867040.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_867041.1 KEGG: noc:Noc_2654 hypothetical protein YP_867042.1 KEGG: gvi:gsr0247 hypothetical protein YP_867043.1 KEGG: neu:NE1377 protein of unknown function DUF132 YP_867044.1 KEGG: rso:RSc3165 hypothetical protein YP_867045.1 PFAM: SirA family protein; KEGG: gka:GK2066 hypothetical protein YP_867046.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: lpf:lpl2012 hypothetical protein YP_867047.1 KEGG: rru:Rru_A1671 hypothetical protein YP_867048.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; KEGG: mag:amb1467 response regulator YP_867049.1 PFAM: HpcH/HpaI aldolase; KEGG: mag:amb3948 citrate lyase subunit beta YP_867050.1 TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: hit:NTHI2023 probable GTPase YP_867051.1 TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis; KEGG: gme:Gmet_0388 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase YP_867052.1 TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis; KEGG: csa:Csal_0516 imidazoleglycerol phosphate synthase, cyclase subunit YP_867053.1 PFAM: phosphoribosyl-AMP cyclohydrolase; KEGG: tcx:Tcr_0217 phosphoribosyl-AMP cyclohydrolase YP_867054.1 PFAM: phosphoribosyl-ATP pyrophosphohydrolase; KEGG: gsu:GSU3094 phosphoribosyl-ATP pyrophosphohydrolase YP_867055.1 PFAM: histidine triad (HIT) protein; KEGG: sth:STH513 protein kinase C inhibitor YP_867056.1 PFAM: regulatory protein, TetR; KEGG: pol:Bpro_5551 TetR family transcriptional regulator YP_867057.1 TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: dps:DP1697 probable acriflavine resistance protein B YP_867058.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: dps:DP1698 related to acriflavine resistance protein E [precursor] septum formation and cell membrane permeability YP_867059.1 KEGG: cps:CPS_4165 sensory box histidine kinase/response regulator YP_867060.1 KEGG: mag:amb1841 hypothetical protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_867061.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: son:SO0860 response regulator YP_867062.1 PFAM: peptidase M48, Ste24p; HtpX domain protein; KEGG: ppr:PBPRA2322 heat shock protein HtpX YP_867063.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: nmu:Nmul_A1110 transcriptional regulator, LysR family YP_867064.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; hemerythrin HHE cation binding domain protein; KEGG: gsu:GSU1041 methyl-accepting chemotaxis protein YP_867066.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine YP_867067.1 KEGG: mmu:16681 keratin complex 2, basic, gene 17 YP_867069.1 PFAM: protein of unknown function DUF350; KEGG: lil:LA2456 hypothetical protein YP_867070.1 KEGG: oih:OB0939 hypothetical protein YP_867071.1 PFAM: PspA/IM30 family protein; KEGG: aae:aq_1345 hypothetical protein YP_867073.1 KEGG: rpd:RPD_3345 S-adenosylmethionine decarboxylase-like YP_867074.1 KEGG: pha:PSHAb0245 hypothetical protein YP_867075.1 PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; KEGG: mfa:Mfla_1229 cobalamin synthesis protein, P47K YP_867076.1 PFAM: ABC transporter; KEGG: bmb:BruAb2_1061 ZnuB, zinc ABC transporter permease YP_867077.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ret:RHE_CH02711 zinc uptake ABC transporter ATP-binding protein YP_867078.1 KEGG: rpb:RPB_0524 ferric uptake regulator, FUR family YP_867079.1 PFAM: periplasmic solute binding protein; KEGG: atc:AGR_C_2805 adhesin YP_867080.1 PFAM: Calcium-binding EF-hand-containing protein; KEGG: psp:PSPPH_2002 calcium-binding protein YP_867081.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: noc:Noc_0676 two comoponent transcriptional regulator, winged helix family YP_867082.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: noc:Noc_0675 signal transduction histidine kinase YP_867083.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: vvu:VV21321 membrane-fusion protein YP_867084.1 PFAM: acriflavin resistance protein; KEGG: hch:HCH_05479 cation/multidrug efflux pump YP_867085.1 KEGG: tdn:Tmden_0219 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: extracellular solute-binding protein, family 3; response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_867086.1 KEGG: mfa:Mfla_2480 homoserine O-acetyltransferase; TIGRFAM: homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold YP_867087.1 TIGRFAM: methionine biosynthesis protein MetW; PFAM: methionine biosynthesis MetW; methyltransferase type 11; methyltransferase type 12; KEGG: mag:amb3971 SAM-dependent methyltransferase YP_867088.1 KEGG: ret:RHE_CH03800 hypoxanthine phosphoribosyltransferase protein; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_867089.1 KEGG: atc:AGR_C_2974 phosphoglycolate phosphatase; TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase YP_867090.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors YP_867091.1 TIGRFAM: sodium pump decarboxylases, subunit gamma; PFAM: sodium pump decarboxylase, subunit gamma; KEGG: stm:STM0766 Oxalacetate decarboxylase: gamma chain YP_867092.1 catalyzes the formation of pyruvate from oxaloacetate YP_867093.1 KEGG: pha:PSHAa0540 oxaloacetate decarboxylase, beta subunit; TIGRFAM: sodium ion-translocating decarboxylase subunit beta; PFAM: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase subunit beta YP_867094.1 TIGRFAM: ribosomal subunit interface protein; KEGG: dps:DP1086 similar to cold-shock protein YP_867095.1 PFAM: permease; KEGG: bca:BCE1837 hypothetical protein YP_867096.1 KEGG: syf:Synpcc7942_0435 hypothetical protein YP_867098.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: eba:ebD1 transcriptional regulator, Nnr-like YP_867099.1 KEGG: rpc:RPC_4302 hypothetical protein YP_867100.1 PFAM: CheW domain protein; KEGG: dsy:DSY2993 hypothetical protein YP_867103.1 KEGG: mag:amb1956 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; hypothetical protein; SMART: PAS domain containing protein YP_867105.1 PFAM: rhodanese; KEGG: tbd:Tbd_0235 rhodanese-like protein YP_867106.1 PFAM: response regulator receiver; KEGG: sat:SYN_00173 response regulator receiver domain YP_867107.1 TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: tcx:Tcr_1330 SecF protein YP_867108.1 TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecD; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: sat:SYN_01524 protein translocase subunit YP_867109.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: mag:amb2515 preprotein translocase subunit YajC YP_867110.1 PFAM: HDOD; KEGG: rfr:Rfer_1986 metal dependent phosphohydrolase YP_867111.1 PFAM: beta-lactamase; KEGG: rfr:Rfer_1985 beta-lactamase-like YP_867112.1 PFAM: protein of unknown function DUF323; KEGG: dps:DP2422 hypothetical protein YP_867113.1 PFAM: peptidase C14, caspase catalytic subunit p20; KEGG: xoo:XOO4635 polysaccharide deacetylase YP_867114.1 KEGG: mag:amb1380 fructose/tagatose bisphosphate aldolase; TIGRFAM: ketose-bisphosphate aldolases; fructose-bisphosphate aldolase, class II, Calvin cycle subtype; PFAM: ketose-bisphosphate aldolase, class-II YP_867115.1 KEGG: dsy:DSY3991 hypothetical protein YP_867116.1 PFAM: SMC domain protein; KEGG: ana:alr0507 unknown protein YP_867117.1 KEGG: ana:alr0508 unknown protein YP_867118.1 KEGG: mca:MCA1804 acetyl-CoA carboxylase, carboxyl transferase, subunit alpha; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, subunit alpha; PFAM: acetyl-CoA carboxylase, subunit alpha YP_867119.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dvu:DVU1805 GGDEF domain protein YP_867120.1 PFAM: EAL domain protein; KEGG: eba:ebA3785 phospholipase A2 family protein YP_867121.1 PFAM: flagellin domain protein; KEGG: hch:HCH_06962 flagellin and related hook-associated protein YP_867122.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; SMART: extracellular solute-binding protein, family 3; KEGG: wsu:WS0850 sensory transduction histidine kinase YP_867123.1 PFAM: response regulator receiver; KEGG: pmi:PMT9312_0130 transcriptional regulator YP_867124.1 KEGG: tel:tll0236 asparagine synthetase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II; asparagine synthase YP_867125.1 KEGG: gme:Gmet_1215 DNA polymerase III alpha subunit; TIGRFAM: DNA polymerase III subunit alpha; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: phosphoesterase PHP domain protein YP_867126.1 KEGG: dps:DP0402 hypothetical protein YP_867127.1 KEGG: bba:Bd1778 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu racemase YP_867128.1 PFAM: thioredoxin domain; KEGG: reu:Reut_A0822 thioredoxin YP_867129.1 KEGG: nfa:nfa55820 hypothetical protein YP_867130.1 PFAM: type IV pilus assembly PilZ YP_867131.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: hemerythrin HHE cation binding domain protein; KEGG: cps:CPS_4221 hemerythrin family protein YP_867134.1 TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, subunit alpha; hydro-lyases, Fe-S type, tartrate/fumarate subfamily subunit beta; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: bmb:BruAb1_0967 FumB, fumarate hydratase, class I YP_867135.1 KEGG: chy:CHY_1640 hypothetical protein YP_867136.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: mag:amb2333 methyl-accepting chemotaxis protein YP_867138.1 KEGG: hch:HCH_00794 FOG: PAS/PAC domain; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_867140.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: mba:Mbar_A1323 hypothetical protein YP_867141.1 Catalyzes the oxidation of dihydrolipoamide to lipoamide YP_867143.1 KEGG: aae:aq_090 hypothetical protein YP_867144.1 TIGRFAM: efflux transporter RND family, MFP subunit; KEGG: eba:ebA3872 AcrA/AcrE family membrane-fusion protein YP_867145.1 PFAM: acriflavin resistance protein; KEGG: gme:Gmet_3127 acriflavin resistance protein YP_867146.1 KEGG: mtc:MT0023 hypothetical protein YP_867147.1 KEGG: eba:ebA2155 hypothetical protein YP_867148.1 KEGG: aba:acid345_2010 hypothetical protein YP_867149.1 KEGG: ddi:DDB0188399 hypothetical protein YP_867150.1 KEGG: cel:Y43F8C.20 Hypothetical protein Y43F8C.20 YP_867151.1 KEGG: dme:CG9983-PD CG9983 gene product from transcript CG9983-RD CG9983 gene product from transcript CG9983-RF YP_867152.1 PFAM: cobyrinic acid a,c-diamide synthase; KEGG: aae:aq_aa35 hypothetical protein YP_867154.1 PFAM: cadherin; SMART: Dystroglycan-type cadherin domain protein; KEGG: rba:RB886 fat protein-possibly involved in cell-cell attachment YP_867155.1 TIGRFAM: pilus (MSHA type) biogenesis protein MshL; PFAM: type II and III secretion system protein; KEGG: tbd:Tbd_0549 type II secretory pathway component PulD YP_867156.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys YP_867157.1 KEGG: gme:Gmet_2983 DNA polymerase A; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2 YP_867158.1 PFAM: proton/sugar symporter, LacY; nucleoside:H+ symporter; major facilitator superfamily MFS_1; KEGG: noc:Noc_2803 nucleoside/H+ symporter, major facilitator superfamily MFS_1 YP_867159.1 KEGG: pca:Pcar_3032 hypothetical protein YP_867161.1 KEGG: ana:alr3988 exonuclease SbcC YP_867162.1 KEGG: mma:MM2005 phosphate-binding protein YP_867163.1 PFAM: glycosyl transferase, family 2; KEGG: rpb:RPB_3840 glycosyl transferase, family 2 YP_867164.1 PFAM: glycosyl transferase, family 2; KEGG: gka:GK2679 dolichyl-phosphate mannose synthase YP_867165.1 PFAM: hypothetical protein; Tetratricopeptide TPR_4; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: mag:amb2610 predicted O-linked N-acetylglucosamine transferase YP_867166.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: eba:ebA6036 rubredoxin reductase YP_867167.1 KEGG: aba:acid345_4059 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein YP_867168.1 TIGRFAM: cysteinyl-tRNA synthetase; PFAM: TM1410 hypothetical-related protein; KEGG: tma:TM1410 cysteinyl-tRNA synthetase YP_867169.1 PFAM: glycosyl transferase, group 1; KEGG: noc:Noc_2479 glycosyl transferase, group 1 YP_867170.1 KEGG: mca:MCA0222 hypothetical protein YP_867172.1 PFAM: aminotransferase, class I and II; KEGG: pfl:PFL_5269 aminotransferase, class I YP_867173.1 PFAM: glycosyl transferase, family 2; KEGG: chy:CHY_0980 glycosyl transferase, group 2 family YP_867174.1 catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole YP_867175.1 PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; KEGG: mca:MCA0463 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_867176.1 KEGG: dar:Daro_1459 hypothetical protein YP_867177.1 KEGG: ccr:CC2114 hypothetical protein YP_867178.1 PFAM: rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: det:DET0406 rubrerythrin/rubredoxin YP_867179.1 PFAM: inositol monophosphatase; KEGG: ccr:CC0308 inositol monophosphatase family protein YP_867180.1 PFAM: PfkB domain protein; KEGG: abo:ABO_0350 carbohydrate kinase, PfkB family YP_867181.1 PFAM: type IV pilus assembly PilZ; KEGG: gsu:GSU1192 hypothetical protein YP_867182.1 KEGG: sth:STH157 hydroxyethylthiazole kinase and thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase YP_867183.1 PFAM: Helix-turn-helix, type 11 domain protein YP_867184.1 PFAM: protein of unknown function DUF955; KEGG: vvu:VV10393 ribosomal protein L22 YP_867187.1 PFAM: transposase IS66; KEGG: ppu:PP3985 ISPpu13, transposase Orf2 YP_867188.1 PFAM: IS66 Orf2 family protein; KEGG: rme:Rmet_1275 IS66 Orf2 like YP_867190.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger, DksA/TraR C4-type; KEGG: sde:Sde_3372 transcriptional regulators, TraR/DksA family YP_867191.1 PFAM: FAD linked oxidase; KEGG: mca:MCA0182 oxidoreductase, FAD-binding YP_867192.1 PFAM: transport-associated; SMART: transport-associated and nodulation region, bacteria; KEGG: mag:amb4504 predicted periplasmic or secreted lipoprotein YP_867193.1 PFAM: protein of unknown function UPF0102; KEGG: sth:STH1475 predicted endonuclease YP_867194.1 PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: ava:Ava_1987 protein of unknown function UPF0011 YP_867195.1 KEGG: pca:Pcar_0105 ABC-type branched-chain amino acid transporters periplasmic component-like YP_867197.1 PFAM: regulatory protein, MarR YP_867198.1 SMART: RNA-processing protein, HAT helix repeating-containing protein; hypothetical protein; KEGG: pgi:PG1014 TPR domain protein YP_867199.1 KEGG: sde:Sde_0641 hypothetical protein YP_867200.1 TIGRFAM: ABC transporter NodJ family; PFAM: ABC-2 type transporter; KEGG: rme:Rmet_2458 ABC transporter NodJ family YP_867201.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bbr:BB3278 ABC, transporter ATP-binding protein YP_867202.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family N-terminal domain protein; KEGG: mta:Moth_2168 hypothetical protein YP_867203.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO2323 methyl-accepting chemotaxis protein YP_867204.1 KEGG: nar:Saro_1349 hypothetical protein YP_867205.1 KEGG: bja:bll4282 probable acetoacetyl-CoA synthetase YP_867206.1 PFAM: glycosyl transferase, group 1; KEGG: rpc:RPC_4204 glycosyl transferase, group 1 YP_867208.1 KEGG: bja:bll4282 probable acetoacetyl-CoA synthetase YP_867209.1 KEGG: rpc:RPC_0218 twin-arginine translocation pathway signal YP_867210.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: ath:At1g73250 GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase (GER1) YP_867213.1 KEGG: psb:Psyr_3746 hypothetical protein YP_867217.1 KEGG: sbo:SBO_P062 IS600 ORF1 YP_867218.1 KEGG: noc:Noc_1958 hypothetical protein YP_867219.1 TIGRFAM: preprotein translocase, Secsubunit alpha; PFAM: helicase; SEC-C motif domain protein; SecA DEAD domain protein; SecA Wing and Scaffold; SecA preprotein cross-linking region; KEGG: noc:Noc_2851 SecA protein YP_867220.1 PFAM: sporulation domain protein; KEGG: dar:Daro_0352 sporulation related YP_867222.1 KEGG: gme:Gmet_2875 hypothetical protein YP_867223.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_867224.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_867225.1 PFAM: Uncharacterized P-loop ATPase protein UPF0042; KEGG: hch:HCH_05324 predicted P-loop-containing kinase YP_867226.1 TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor, core-binding region; sigma-54, DNA-binding domain protein; KEGG: sde:Sde_3179 response regulator receiver domain protein (CheY-like) YP_867227.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sat:SYN_00946 ABC transporter ATP-binding protein YP_867228.1 PFAM: OstA family protein; KEGG: sat:SYN_00947 organic solvent tolerance protein YP_867229.1 PFAM: protein of unknown function DUF1239 YP_867230.1 TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: bbr:BB4502 probable hydrolase YP_867231.1 KEGG: csa:Csal_2221 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS) YP_867232.1 PFAM: CBS domain containing protein; KEGG: mja:MJ1225 hypothetical protein YP_867233.1 PFAM: CoA-binding protein; KEGG: pol:Bpro_4258 CoA-binding YP_867234.1 KEGG: mhu:Mhun_1334 molybdenum ABC transporter periplasmic molybdate-binding protein YP_867235.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: mag:amb3735 signal transduction histidine kinase YP_867236.1 KEGG: cvi:CV0882 probable sensor/response regulator hybrid protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein YP_867237.1 PFAM: protein of unknown function DUF163; KEGG: csa:Csal_1544 protein of unknown function DUF163 YP_867238.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: mlo:mll4005 hypothetical protein YP_867239.1 KEGG: noc:Noc_2661 nicotinic acid mononucleotide adenyltransferase; TIGRFAM: cytidyltransferase-related domain; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase YP_867240.1 TIGRFAM: gamma-glutamyl phosphate reductase; PFAM: aldehyde dehydrogenase; KEGG: mca:MCA1880 gamma-glutamyl phosphate reductase YP_867241.1 KEGG: dar:Daro_3473 glutamate 5-kinase, ProB-related; TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein YP_867242.1 PFAM: GTP-binding protein, HSR1-related; GTP1/OBG sub domain protein; KEGG: rru:Rru_A1240 GTP-binding protein YP_867243.1 involved in the peptidyltransferase reaction during translation YP_867244.1 PFAM: ribosomal protein L21; KEGG: mag:amb4077 ribosomal protein L21 YP_867245.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: csa:Csal_2237 maf protein YP_867246.1 PFAM: polyprenyl synthetase; KEGG: mag:amb2162 geranylgeranyl pyrophosphate synthase YP_867247.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; CHASE domain protein; KEGG: bba:Bd0596 two component sensor histidine kinase YP_867249.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: dar:Daro_1513 HesB/YadR/YfhF YP_867250.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: hemerythrin HHE cation binding domain protein; KEGG: vpa:VP1289 GGDEF family protein YP_867251.1 PFAM: protein kinase; Sel1 domain protein repeat-containing protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: tbd:Tbd_0475 serine/threonine protein kinase YP_867252.1 PFAM: protein kinase; Sel1 domain protein repeat-containing protein; SMART: serine/threonine protein kinase; KEGG: bte:BTH_II0256 serine/threonine protein kinase YP_867253.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: mfa:Mfla_1389 TPR repeat YP_867254.1 TIGRFAM: drug resistance transporter Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rba:RB11273 bicyclomycin resistance protein YP_867255.1 PFAM: protein of unknown function DUF45; KEGG: gox:GOX1405 hypothetical protein YP_867257.1 PFAM: peptidase S24, S26A and S26B; KEGG: son:SO0641 prophage MuSo1, transcriptional regulator, Cro/CI family YP_867258.1 KEGG: pcr:Pcryo_1599 protein of unknown function DUF534 YP_867259.1 KEGG: mag:amb1110 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_867260.1 PFAM: protein of unknown function DUF344; KEGG: tdn:Tmden_1884 protein of unknown function DUF344 YP_867261.1 PFAM: response regulator receiver; Hpt domain protein; KEGG: cya:CYA_2836 sensory box histidine kinase/response regulator YP_867263.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: bbr:BB1638 RNA polymerase sigma factor YP_867266.1 PFAM: paraquat-inducible protein A; KEGG: cvi:CV2549 probable transmembrane protein YP_867267.1 PFAM: paraquat-inducible protein A; KEGG: rme:Rmet_4089 hypothetical protein YP_867268.1 PFAM: hypothetical protein; KEGG: mca:MCA0363 paraquat-inducible protein B YP_867269.1 KEGG: mca:MCA0364 lipoprotein YP_867270.1 PFAM: major facilitator superfamily MFS_1; KEGG: bba:Bd0461 multidrug resistance protein YP_867271.1 TIGRFAM: DNA polymerase III subunit delta; PFAM: DNA polymerase III, delta; KEGG: rru:Rru_A3629 DNA polymerase III subunit delta YP_867272.1 TIGRFAM: helicase, RecD/TraA family; KEGG: dde:Dde_2725 helicase RecD/TraA YP_867273.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: eba:ebA4466 predicted histidine kinase-like ATPase YP_867274.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: eba:ebA4468 DNA-binding response regulator OmpR YP_867275.1 KEGG: eli:ELI_04495 heavy metal RND efflux outer membrane protein, CzcC family protein YP_867276.1 TIGRFAM: efflux transporter RND family, MFP subunit; KEGG: sde:Sde_1930 membrane-fusion protein-like YP_867277.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: hch:HCH_03020 silver efflux pump YP_867278.1 KEGG: pha:PSHAa0304 cation efflux system protein YP_867279.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: dar:Daro_3750 PAS:GGDEF YP_867280.1 PFAM: response regulator receiver; KEGG: mag:amb3446 response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain YP_867281.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: cvi:CV2323 probable transcriptional regulatory protein, LuxR family YP_867282.1 PFAM: CheB methylesterase; MCP methyltransferase, CheR-type; KEGG: mbu:Mbur_0399 MCP methyltransferase, CheR-type YP_867284.1 PFAM: transposase IS66; KEGG: hal:VNG0056H hypothetical protein encoded by ISH10 YP_867285.1 KEGG: mbu:Mbur_0399 MCP methyltransferase, CheR-type; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_867286.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: PAS domain containing protein; KEGG: mbu:Mbur_0400 PAS sensor signal transduction histidine kinase YP_867287.1 KEGG: mag:amb3329 hypothetical 1041 kDa protein in HypE 3'region; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_867288.1 KEGG: dar:Daro_4142 PAS; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_867292.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: pca:Pcar_0891 cation efflux family protein YP_867293.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: csa:Csal_0685 glyoxalase/bleomycin resistance protein/dioxygenase YP_867294.1 KEGG: gsu:GSU2314 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_867295.1 KEGG: gme:Gmet_1707 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_867296.1 TIGRFAM: phosphonate ABC transporter periplasmic phosphonate-binding protein; KEGG: ppr:PBPRB1010 hypothetical protein YP_867297.1 TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: uracil-DNA glycosylase superfamily; KEGG: mfa:Mfla_0414 phage SPO1 DNA polymerase-related protein YP_867298.1 PFAM: radical SAM protein; KEGG: plu:plu3368 hypothetical protein YP_867300.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: cps:CPS_4164 response regulator/phosphatase YP_867301.1 KEGG: aba:acid345_4059 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: extracellular solute-binding protein, family 3; response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_867302.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: ATPase AAA; KEGG: neu:NE2452 ABC transporter fused permease and ATPase domains YP_867303.1 KEGG: dge:Dgeo_0789 hypothetical protein YP_867304.1 PFAM: sporulation domain protein YP_867305.1 KEGG: mta:Moth_1968 SirA-like YP_867306.1 PFAM: histidine kinase A domain protein domain protein; Diverse 7TM receptor, extracellular region 2; Diverse 7TM receptor, transmembrane region; KEGG: bur:Bcep18194_B1562 periplasmic sensor signal transduction histidine kinase YP_867307.1 KEGG: sth:STH1127 molybdopterin biosynthesis protein YP_867308.1 TIGRFAM: cysteine synthases; cysteine synthase A; PFAM: pyridoxal-5'-phosphate-dependent enzyme subunit beta; KEGG: gme:Gmet_1558 cysteine synthase A YP_867309.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: sth:STH1126 molybdopterin biosynthesis protein YP_867310.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: mag:amb0200 predicted transcriptional regulator YP_867311.1 KEGG: rpb:RPB_0623 deoxyuridine 5'-triphosphate nucleotidohydrolase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase YP_867312.1 TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; KEGG: rsp:RSP_0599 phosphopantothenoylcysteine synthase/decarboxylase YP_867313.1 PFAM: GTP cyclohydrolase I; KEGG: noc:Noc_1696 GTP cyclohydrolase I YP_867314.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA YP_867315.1 PFAM: helicase; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sdn:Sden_0449 DEAD/DEAH box helicase-like protein YP_867316.1 PFAM: ribosomal protein S20; KEGG: mag:amb0635 ribosomal protein S20 YP_867317.1 TIGRFAM: integral membrane protein MviN; PFAM: multi antimicrobial extrusion protein MatE; virulence factor MVIN family protein; KEGG: noc:Noc_3038 virulence factor MviN-like YP_867318.1 TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase; KEGG: noc:Noc_2822 dihydroorotate dehydrogenase 1 YP_867319.1 PFAM: nuclease (SNase domain protein); KEGG: staphylococcal nuclease homologue YP_867320.1 KEGG: ngo:NGO0072 penicillin tolerance protein; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein YP_867321.1 KEGG: cps:CPS_1881 hypothetical protein YP_867322.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mag:amb1467 response regulator YP_867323.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: bur:Bcep18194_C7539 hypothetical protein YP_867324.1 catalyzes the hydrolysis of pyrophosphate to phosphate YP_867325.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate YP_867326.1 PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: gme:Gmet_1105 sodium/hydrogen exchanger YP_867327.1 KEGG: dde:Dde_3088 glycogen/starch/alpha-glucan phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylases; PFAM: glycosyl transferase, family 35 YP_867328.1 PFAM: cation transporter; KEGG: dde:Dde_2029 K+ transporter trk YP_867329.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain YP_867330.1 PFAM: ankyrin; KEGG: afm:Afu1g01020 hypothetical protein YP_867332.1 KEGG: dsy:DSY3991 hypothetical protein YP_867333.1 KEGG: cps:CPS_3512 Na+/H+ antiporter NhaD YP_867334.1 PFAM: response regulator receiver; KEGG: sat:SYN_02214 response regulator with sigma 54 interaction domain YP_867335.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: chy:CHY_1856 sensor histidine kinase YP_867336.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bpa:BPP4206 LysR family regulatory protein YP_867337.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bbr:BB4676 LysR family regulatory protein YP_867338.1 KEGG: sil:SPO3414 lipoprotein YP_867339.1 KEGG: mxa:MXAN_2206 hypothetical protein YP_867340.1 PFAM: DNA topoisomerase, type IA, Zn finger domain protein; KEGG: gme:Gmet_1797 DNA topoisomerase I:restriction endonuclease YP_867342.1 PFAM: Intracellular septation protein A; KEGG: mca:MCA1646 intracellular septation protein A YP_867343.1 KEGG: tbd:Tbd_2176 hypothetical protein YP_867344.1 KEGG: cya:CYA_1012 macrocin-O-methyltransferase domain protein YP_867345.1 KEGG: cvi:CV4307 hypothetical protein YP_867346.1 TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase, class-II; sugar isomerase (SIS); KEGG: rru:Rru_A3029 glucosamine-fructose-6-phosphate aminotransferase, isomerising YP_867347.1 KEGG: dar:Daro_0220 UDP-N-acetylglucosamine pyrophosphorylase; TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: transferase; nucleotidyl transferase YP_867348.1 TIGRFAM: ATP synthase F1 subunit epsilon; PFAM: H+-transporting two-sector ATPase, delta/subunit epsilon; KEGG: rru:Rru_A1227 H+-transporting two-sector ATPase, delta/subunit epsilon YP_867349.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_867350.1 KEGG: mag:amb4140 F0F1-type ATP synthase, gamma subunit; TIGRFAM: ATP synthase F1 subunit gamma; PFAM: H+-transporting two-sector ATPase, subunit gamma YP_867351.1 KEGG: eli:ELI_08770 ATP synthase subunit alpha; TIGRFAM: ATP synthase F1 subunit alpha; PFAM: H+-transporting two-sector ATPase, alpha/subunit beta, central region; H+-transporting two-sector ATPase, alpha/subunit beta domain protein YP_867352.1 TIGRFAM: ATP synthase F1 subunit delta; PFAM: H+-transporting two-sector ATPase, delta (OSCP) subunit; KEGG: nwi:Nwi_0429 H+-transporting two-sector ATPase, delta (OSCP) subunit YP_867353.1 PFAM: FxsA cytoplasmic membrane protein; KEGG: vch:VC2696 FxsA protein YP_867354.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain; KEGG: sat:SYN_02443 SUA5/YciO/YrdC/YwlC family protein YP_867355.1 KEGG: pca:Pcar_2230 probable phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_867356.1 KEGG: pca:Pcar_2231 phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylamine--glycine ligase; PFAM: phosphoribosylglycinamide synthetase YP_867359.1 KEGG: gsu:GSU0609 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: MGS domain protein; AICARFT/IMPCHase bienzyme, formylation region YP_867360.1 PFAM: Fmu (Sun) domain protein; KEGG: mfa:Mfla_0208 Fmu (Sun) YP_867361.1 PFAM: protein of unknown function UPF0118; KEGG: vch:VC2162 permease PerM YP_867362.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: pcr:Pcryo_1862 ErfK/YbiS/YcfS/YnhG YP_867363.1 PFAM: protein of unknown function UPF0005; KEGG: eba:ebA4143 hypothetical protein YP_867364.1 TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: gsu:GSU0159 dihydrodipicolinate synthase YP_867365.1 PFAM: cytochrome C, class I; KEGG: rsp:RSP_2577 isocytochrome C2 YP_867366.1 PFAM: cytochrome C, class I; KEGG: nar:Saro_0468 cytochrome C, class I YP_867367.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_867368.1 PFAM: hypothetical protein; peptidase C14, caspase catalytic subunit p20; KEGG: bbr:BB4985 hypothetical protein YP_867369.1 PFAM: Autotransporter beta- domain protein; KEGG: mag:amb1085 uncharacterized protein with a C-terminal OMP domain YP_867370.1 TIGRFAM: transketolase; PFAM: transketolase domain protein; transketolase, central region; KEGG: bca:BCE3718 transketolase YP_867371.1 PFAM: radical SAM protein; KEGG: gvi:gll0887 hypothetical protein YP_867372.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: neu:NE1215 short-chain dehydrogenase/reductase (SDR) superfamily YP_867373.1 PFAM: CBS domain containing protein; Cl- channel, voltage-gated family protein; KEGG: dde:Dde_0310 CBS YP_867374.1 PFAM: UvrD/REP helicase; KEGG: rru:Rru_A1536 UvrD/REP helicase YP_867375.1 TIGRFAM: gid protein; PFAM: glucose-inhibited division protein A; KEGG: nwi:Nwi_1764 glucose-inhibited division protein A YP_867377.1 PFAM: peptidase M24; KEGG: mbu:Mbur_1619 peptidase M24 YP_867378.1 PFAM: ThiJ/PfpI domain protein; KEGG: psb:Psyr_0290 ThiJ/PfpI YP_867379.1 KEGG: mfa:Mfla_2542 hypothetical protein YP_867380.1 KEGG: mfa:Mfla_2541 ribonucleoside-diphosphate reductase; TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: ribonucleotide reductase large subunit YP_867381.1 PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; KEGG: xcb:XC_2171 StrX protein YP_867383.1 TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases; PFAM: UbiE/COQ5 methyltransferase; methyltransferase type 11; methyltransferase type 12; KEGG: tcx:Tcr_0402 ubiquinone/menaquinone biosynthesis methyltransferase YP_867384.1 KEGG: sme:SMa1289 hypothetical protein YP_867385.1 TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: protein of unknown function RIO1; ABC transporter; KEGG: mca:MCA2019 ubiquinone biosynthesis protein AarF YP_867386.1 KEGG: pca:Pcar_2534 polypeptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase YP_867387.1 PFAM: amino acid-binding ACT domain protein; KEGG: gsu:GSU3457 glycine cleavage system transcriptional repressor YP_867388.1 PFAM: sporulation domain protein; KEGG: xtr:448168 ribosome binding protein 1 homolog 180kDa (dog) Pfam: Rib_recp_KP_reg Myosin_tail_1 DUF869 Filament KE2 Tropomyosin TPR_MLP1_2 PspA_IM30 MSG Not3 PROSITE: LYS_RICH PRO_RICH YP_867389.1 KEGG: chy:CHY_1384 sodium ABC transporter ATP-binding protein; TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; SMART: ATPase AAA YP_867390.1 PFAM: cytochrome C biogenesis protein CcmB; ABC-2 type transporter; KEGG: chy:CHY_1383 heme exporter protein CcmB YP_867391.1 TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome C assembly protein; KEGG: mag:amb4197 ABC-type transporter involved in cytochrome C biogenesis, permease YP_867392.1 PFAM: CcmE/CycJ protein; KEGG: ppr:PBPRA0951 cytochrome C biogenesis proteinCcmE YP_867393.1 PFAM: cytochrome C assembly protein; KEGG: sil:SPOA0198 cytochrome C biogenesis protein CycK YP_867394.1 TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: rme:Rmet_4055 periplasmic protein thiol YP_867395.1 PFAM: cytochrome C biogenesis protein; KEGG: rru:Rru_A0033 cytochrome C biogenesis protein YP_867396.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; methyltransferase type 12; KEGG: mxa:MXAN_4908 protein methyltransferase HemK YP_867397.1 PFAM: peptidase M23B; KEGG: hch:HCH_06239 membrane protein related to metalloendopeptidase YP_867398.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: tbd:Tbd_2578 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) YP_867399.1 PFAM: protein of unknown function DUF610, YibQ; KEGG: pca:Pcar_1672 hypothetical protein YP_867400.1 KEGG: gsu:GSU1772 carboxy-terminal processing protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41 YP_867401.1 PFAM: peptidase M23B; KEGG: csa:Csal_0045 peptidase M23B YP_867402.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate YP_867403.1 PFAM: citrate transporter; TrkA-C domain protein; TRAP C4-dicarboxylate transporter permease DctM subunit; KEGG: gsu:GSU2317 TrkA domain protein YP_867404.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: cch:Cag_0831 regulatory proteins, AsnC family YP_867405.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: tcx:Tcr_1797 alpha amylase, catalytic region YP_867406.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; KEGG: noc:Noc_2718 HAD-superfamily hydrolase subfamily IIB YP_867407.1 KEGG: syn:sll0045 sucrose phosphate synthase; TIGRFAM: sucrose-phosphate synthase; PFAM: glycosyl transferase, group 1; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase, type 3 YP_867408.1 PFAM: methyltransferase type 11; methyltransferase type 12 YP_867409.1 KEGG: cps:CPS_0256 hypothetical protein YP_867410.1 KEGG: rfr:Rfer_3901 CRISPR-associated helicase Cas3; TIGRFAM: CRISPR-associated helicase Cas3; PFAM: helicase domain protein; SMART: metal-dependent phosphohydrolase, HD region YP_867411.1 TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; KEGG: eba:ebA3290 hypothetical protein YP_867412.1 TIGRFAM: CRISPR-associated protein, Csd1 family; KEGG: eba:ebA3288 hypothetical protein YP_867413.1 TIGRFAM: CRISPR-associated protein, CT1132 family; CRISPR-associated protein, Csd2 family; PFAM: CRISPR-associated protein TM1801; KEGG: rfr:Rfer_3904 CRISPR-associated protein TM1801 YP_867414.1 TIGRFAM: CRISPR-associated protein Cas4; KEGG: xoo:XOO0868 RecB family exonuclease YP_867415.1 TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: cte:CT1130 hypothetical protein YP_867416.1 TIGRFAM: CRISPR-associated protein Cas2; KEGG: dvu:DVUA0135 CRISPR-associated protein Cas2 YP_867417.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; hypothetical protein; KEGG: aba:acid345_4059 multi-sensor hybrid histidine kinase YP_867418.1 PFAM: CheC domain protein; KEGG: rpc:RPC_4604 CheC, inhibitor of MCP methylation YP_867419.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: sdn:Sden_1684 GGDEF domain YP_867420.1 KEGG: cvi:CV0368 hypothetical protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region YP_867421.1 KEGG: rfr:Rfer_2637 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_867422.1 TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: neu:NE1611 bacterial general secretion pathway protein G YP_867423.1 KEGG: bba:Bd0596 two component sensor histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein YP_867424.1 KEGG: hch:HCH_05187 protein containing STAS (sulfate transporter and anti-Sigma factor antagonist) domain YP_867425.1 PFAM: response regulator receiver; stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: hch:HCH_05185 response regulator containing a CheY-like receiver domain and a GGDEF domain YP_867426.1 TIGRFAM: phosphonate ABC transporter periplasmic phosphonate-binding protein; KEGG: rpa:RPA1385 phosphonate transport system substrate-binding protein YP_867427.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: gme:Gmet_2956 multi-sensor signal transduction histidine kinase YP_867428.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: sme:SMa2355 DNA polymerase IV YP_867429.1 PFAM: alcohol dehydrogenase, zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: ava:Ava_3336 zinc-containing alcohol dehydrogenase superfamily YP_867430.1 PFAM: metallophosphoesterase; KEGG: bur:Bcep18194_C6632 metallophosphoesterase YP_867431.1 KEGG: cch:Cag_1092 hypothetical protein YP_867434.1 KEGG: ccr:CC2750 hypothetical protein YP_867435.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: ccr:CC2751 RNA polymerase sigma-70 factor, ECF subfamily YP_867436.1 SMART: Calcium-binding EF-hand-containing protein; KEGG: sil:SPO2757 EF hand domain protein YP_867437.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: gvi:glr1369 hypothetical protein YP_867438.1 PFAM: chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: bja:bll7295 hypothetical protein YP_867439.1 KEGG: pfl:PFL_4235 deoxyguanosinetriphosphate triphosphohydrolase, TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; SMART: metal-dependent phosphohydrolase, HD region YP_867441.1 PFAM: helix-turn-helix domain protein; peptidase S24, S26A and S26B; KEGG: psb:Psyr_2812 helix-turn-helix motif:peptidase S24, S26A and S26B YP_867442.1 PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: gme:Gmet_3011 6-phosphogluconate dehydrogenase, NAD-binding YP_867443.1 PFAM: hypothetical protein; Tetratricopeptide TPR_3; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: bxe:Bxe_A2482 sulfotransferase, TPR-domain protein YP_867444.1 PFAM: cytochrome C, class I; KEGG: rsp:RSP_0296 cytochrome c2 YP_867445.1 TIGRFAM: phosphate transporter regulatory protein PhoU; PFAM: PhoU family protein; KEGG: mag:amb1371 phosphate uptake regulator YP_867446.1 PFAM: AMP-dependent synthetase and ligase; KEGG: nmu:Nmul_A0095 AMP-dependent synthetase and ligase YP_867447.1 PFAM: enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: noc:Noc_0826 3-hydroxyacyl-CoA dehydrogenase YP_867448.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_867449.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA YP_867450.1 KEGG: hch:HCH_02753 hypothetical protein YP_867451.1 TIGRFAM: TonB-dependent copper receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: tcx:Tcr_1564 TonB-dependent receptor YP_867452.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: cyb:CYB_2726 TonB family protein YP_867453.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: eca:ECA0358 biopolymer transporter YP_867454.1 PFAM: biopolymertransporter ExbD/TolR; KEGG: bxe:Bxe_B2477 biopolymer transporter ExbD/TolR YP_867455.1 TIGRFAM: agmatinase; PFAM: arginase/agmatinase/formiminoglutamase; KEGG: syn:sll0228 agmatinase YP_867456.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus YP_867458.1 TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: pca:Pcar_1168 probable flagellar motor switch protein (FliN) YP_867459.1 PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: dvu:DVU0910 flagellar motor switch protein FliM YP_867460.1 PFAM: flagellar basal body-associated protein FliL; KEGG: tdn:Tmden_0840 flagellar basal body-associated protein FliL YP_867461.1 PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: ade:Adeh_1387 hypothetical protein YP_867462.1 PFAM: flagellar hook capping protein; KEGG: reu:Reut_B5627 flagellar hook capping protein YP_867463.1 PFAM: flagellar hook-length control protein; KEGG: tcx:Tcr_1437 flagellar hook-length control protein YP_867464.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; hemerythrin HHE cation binding domain protein; KEGG: gsu:GSU1041 methyl-accepting chemotaxis protein YP_867465.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: mag:amb1613 2-nitropropane dioxygenase YP_867467.1 PFAM: response regulator receiver; CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: dps:DP2642 related to two-component system sensory/regulatory protein (Che family) YP_867468.1 PFAM: CheW domain protein; KEGG: dps:DP2643 related to purine-binding chemotaxis protein CheW YP_867469.1 PFAM: chemotaxis sensory transducer; KEGG: dar:Daro_0724 chemotaxis sensory transducer YP_867470.1 PFAM: sulfate transporter/antisigma-factor antagonist STAS; KEGG: pae:PA3347 hypothetical protein YP_867471.1 PFAM: response regulator receiver; stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: hch:HCH_05185 response regulator containing a CheY-like receiver domain and a GGDEF domain YP_867472.1 PFAM: CheB methylesterase; response regulator receiver; KEGG: hch:HCH_05166 chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain YP_867473.1 PFAM: MCP methyltransferase, CheR-type; KEGG: pae:PA3348 probable chemotaxis protein methyltransferase YP_867474.1 PFAM: response regulator receiver; KEGG: wsu:WS0619 response regulator YP_867475.1 KEGG: gsu:GSU0404 hypothetical protein YP_867476.1 PFAM: response regulator receiver; KEGG: gsu:GSU0403 chemotaxis protein CheY YP_867477.1 PFAM: CBS domain containing protein YP_867478.1 TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Miro domain protein; KEGG: mta:Moth_1322 small GTP-binding protein domain YP_867479.1 PFAM: pyrrolo-quinoline quinone; KEGG: pfo:Pfl_4598 pyrrolo-quinoline quinone YP_867480.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: mag:amb1342 hypothetical protein YP_867481.1 KEGG: pca:Pcar_1041 histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S); anticodon-binding domain protein YP_867482.1 KEGG: gme:Gmet_1353 IspG protein; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG family protein YP_867483.1 KEGG: rru:Rru_A0746 hypothetical protein YP_867484.1 KEGG: mca:MCA0969 NAD(+) synthetase; TIGRFAM: NAD+ synthetase; PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD+ synthase YP_867485.1 TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase, class I and II; KEGG: ava:Ava_4334 histidinol-phosphate aminotransferase YP_867486.1 KEGG: bbr:BB0777 hypothetical protein YP_867487.1 KEGG: tcx:Tcr_0469 hypothetical protein YP_867489.1 PFAM: protein of unknown function DUF190; KEGG: mbu:Mbur_1418 protein of unknown function DUF190 YP_867490.1 KEGG: vch:VC1089 periplasmic binding protein-related protein YP_867491.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: ATPase AAA; KEGG: psp:PSPPH_0252 alginate biosynthesis transcriptional regulatory protein AlgB YP_867492.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: pae:PA5484 probable two-component sensor YP_867493.1 PFAM: cation transporter; KEGG: sat:SYN_01091 potassium uptake protein YP_867494.1 PFAM: TrkA-N domain protein; KEGG: chy:CHY_1574 potassium uptake protein KtrA YP_867495.1 KEGG: gme:Gmet_2343 hypothetical protein YP_867496.1 TIGRFAM: MJ0042 family finger-like protein; KEGG: sdn:Sden_1485 ATPase AAA containing von Willebrand factor type A (vWA) domain-like protein YP_867497.1 KEGG: hch:HCH_00573 predicted ATPase involved in cell division; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: ATPase AAA YP_867498.1 PFAM: protein of unknown function DUF214; KEGG: gsu:GSU1774 cell division ABC transporter permease FtsX YP_867499.1 TIGRFAM: glycine cleavage system protein H; PFAM: glycine cleavage H-protein; KEGG: ade:Adeh_1244 glycine cleavage system protein H YP_867500.1 KEGG: dsy:DSY0277 hypothetical protein YP_867501.1 KEGG: dsy:DSY0277 hypothetical protein YP_867502.1 PFAM: ROSMUCR transcriptional regulator; KEGG: sme:SMc00058 transcription regulator protein YP_867504.1 KEGG: mba:Mbar_A3646 hypothetical protein YP_867506.1 PFAM: methyltransferase type 11; KEGG: dde:Dde_0429 methylase involved in ubiquinone/menaquinone biosynthesis-like YP_867507.1 TIGRFAM: excinuclease ABC subunit A; PFAM: ABC transporter related; KEGG: pca:Pcar_0087 excinuclease ABC subunit A YP_867508.1 TIGRFAM: siroheme synthase; KEGG: chy:CHY_0754 siroheme synthase, N-terminal domain protein YP_867509.1 TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; (uracil-5)-methyltransferase; KEGG: eba:ebA771 23S rRNA (uracil-5-)-methyltransferase YP_867510.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_867511.1 KEGG: rpa:RPA1199 enoyl-acyl carrier protein reductase YP_867512.1 PFAM: protein of unknown function DUF185; KEGG: cya:CYA_1998 hypothetical protein YP_867513.1 KEGG: mag:amb2774 NADH:ubiquinone oxidoreductase subunit 2; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I) YP_867514.1 KEGG: rru:Rru_A1567 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I) YP_867515.1 KEGG: rru:Rru_A1566 NADH-plastoquinone oxidoreductase, chain 5; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I) YP_867516.1 PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: mag:amb2777 NADH:ubiquinone oxidoreductase subunit 11 or 4L YP_867517.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; KEGG: bmb:BruAb1_0825 NuoJ, NADH dehydrogenase I, J subunit YP_867518.1 Catalyzes the transfer of electrons from NADH to quinone YP_867519.1 PFAM: respiratory-chain NADH dehydrogenase, subunit 1; KEGG: nmu:Nmul_A1098 respiratory-chain NADH dehydrogenase, subunit 1 YP_867520.1 TIGRFAM: NADH-quinone oxidoreductase, chain G; PFAM: ferredoxin; molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; KEGG: rru:Rru_A1561 NADH-quinone oxidoreductase, chain G YP_867521.1 KEGG: rru:Rru_A1560 NADH-quinone oxidoreductase, F subunit; TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit YP_867522.1 TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: mag:amb2783 NADH:ubiquinone oxidoreductase 24 kD subunit YP_867523.1 Catalyzes the transfer of electrons from NADH to quinone YP_867524.1 KEGG: aor:AO090001000553 NADH-ubiquinone oxidoreductase, NDUFS3/30 kDa subunit; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone), 30 kDa subunit YP_867525.1 KEGG: mag:amb2786 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductase; TIGRFAM: NADH-quinone oxidoreductase, subunit beta; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit YP_867526.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; KEGG: rpc:RPC_2399 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 YP_867528.1 PFAM: transposase, IS4 family protein; KEGG: gka:GK3116 transposase YP_867529.1 PFAM: CoA-binding protein; KEGG: gme:Gmet_0306 CoA-binding protein YP_867530.1 PFAM: ATP-grasp domain protein; KEGG: gme:Gmet_0305 succinyl-CoA synthetase subunit beta-like YP_867531.1 KEGG: eca:ECA1150 ATP-dependent protease la; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: ATPase AAA YP_867532.1 binds and unfolds substrates as part of the ClpXP protease YP_867533.1 KEGG: vpa:VP0917 ATP-dependent Clp protease proteolytic subunit; TIGRFAM: ATP-dependent Clp protease proteolytic subunit ClpP; PFAM: peptidase S14, ClpP YP_867534.1 TIGRFAM: trigger factor; PFAM: peptidylprolyl isomerase, FKBP-type; trigger factor, C-terminal domain protein; trigger factor, N-terminal domain; KEGG: csa:Csal_2047 trigger factor YP_867535.1 PFAM: glutamyl-tRNA reductase; shikimate/quinate 5-dehydrogenase; KEGG: gme:Gmet_3233 glutamyl-tRNA reductase:shikimate/quinate 5-dehydrogenase YP_867536.1 TIGRFAM: peptide chain release factor 1; PFAM: class I peptide chain release factor; PCRF domain protein; KEGG: bha:BH3775 peptide chain release factor RF-1 YP_867537.1 KEGG: cte:CT1692 hypothetical protein YP_867538.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway YP_867539.1 PFAM: protein of unknown function UPF0047; KEGG: mhu:Mhun_1526 protein of unknown function UPF0047 YP_867540.1 PFAM: ribulose-phosphate 3-epimerase; KEGG: gme:Gmet_0067 ribulose-phosphate 3-epimerase YP_867541.1 KEGG: mag:amb4390 hypothetical protein YP_867542.1 PFAM: TatD-related deoxyribonuclease; KEGG: mmu:68972 TatD DNase domain containing 3 YP_867543.1 PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: mag:amb4312 glutamyl- and glutaminyl-tRNA synthetase YP_867544.1 PFAM: CheW domain protein; KEGG: gme:Gmet_2421 CheW protein YP_867545.1 PFAM: protein of unknown function DUF167; KEGG: pca:Pcar_0617 conserved hypothetical protein TIGR00251 YP_867546.1 PFAM: protein of unknown function YGGT; KEGG: plu:plu1178 hypothetical protein YP_867547.1 KEGG: ade:Adeh_2480 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein YP_867548.1 PFAM: alanine racemase domain protein; KEGG: pca:Pcar_0403 conserved hypothetical protein TIGR00044 YP_867549.1 TIGRFAM: thioredoxin; PFAM: thioredoxin domain; KEGG: mag:amb4286 thiol-disulfide isomerase and thioredoxins YP_867550.1 PFAM: glycosyl transferase, group 1; KEGG: mag:amb3527 glycosyltransferase YP_867551.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining; maintains net negative superhelicity YP_867552.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: mag:amb0681 predicted Rossmann fold nucleotide-binding protein YP_867553.1 PFAM: protein of unknown function DUF205; KEGG: jan:Jann_3906 protein of unknown function DUF205 YP_867554.1 KEGG: ret:RHE_CH01595 hypothetical protein YP_867555.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bcl:ABC4079 C4-dicarboxylate transporter substrate-binding protein YP_867556.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: zmo:ZMO1542 single-strand DNA binding protein YP_867558.1 PFAM: FAD dependent oxidoreductase; KEGG: cbu:CBU_1839 FAD-dependent oxidoreductase YP_867559.1 TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: tcx:Tcr_0191 sun protein YP_867560.1 TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; KEGG: oih:OB2075 GTP-binding protein (EngB family) YP_867561.1 TIGRFAM: hypothetical protein; PFAM: dihydrouridine synthase, DuS; KEGG: zmo:ZMO1127 tRNA-dihydrouridine synthase YP_867562.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: gme:Gmet_2562 signal transduction histidine kinase, nitrogen specific, NtrB YP_867563.1 KEGG: mag:amb2367 response regulator containing CheY-like receiver; TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: ATPase AAA YP_867564.1 KEGG: nha:Nham_0270 FoF1 ATP synthase, subunit I YP_867565.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_867566.1 TIGRFAM: ATP synthase F0 subunit chi; PFAM: H+-transporting two-sector ATPase, C subunit; KEGG: mag:amb3994 ATP synthase C chain YP_867567.1 TIGRFAM: ATP synthase F0 subunit beta; PFAM: H+-transporting two-sector ATPase, B/B' subunit; KEGG: sth:STH87 ATP synthase subunit beta YP_867568.1 KEGG: mca:MCA1161 hypothetical protein YP_867569.1 PFAM: membrane bound O-acyl transferase, MBOAT family protein; KEGG: mca:MCA1162 alginate O-acetyltransferase YP_867570.1 TIGRFAM: glutamate--cysteine ligase; PFAM: glutamate--cysteine ligase, GCS2; KEGG: xcb:XC_0768 glutamate-cysteine ligase precursor YP_867571.1 PFAM: TrkA-N domain protein; ion transporter; TrkA-C domain protein; ion transport 2 domain protein,; KEGG: tdn:Tmden_1332 TrkA-N:ion transporter YP_867572.1 PFAM: glutathione S-transferase, N-terminal domain; KEGG: sil:SPO0270 glutathione S-transferase family protein YP_867573.1 KEGG: ppu:PP5289 acetylglutamate kinase; TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase YP_867574.1 PFAM: SH3, type 3 domain protein; SMART: SH3 domain protein domain protein; KEGG: neu:NE2386 bacterial SH3 domain homologue YP_867575.1 PFAM: protein of unknown function DUF1538; KEGG: vpa:VP0810 PTS system mannose-specific, factor IIC YP_867576.1 PFAM: protein of unknown function DUF1538; KEGG: cps:CPS_1952 hypothetical protein YP_867577.1 KEGG: dps:DP0349 similar to nitrogen regulatory protein P-II family proteins YP_867578.1 PFAM: FAD dependent oxidoreductase; KEGG: lpn:lpg1276 electron transferring flavoprotein dehydrogenase YP_867579.1 KEGG: sgl:SG2073 hypothetical protein YP_867580.1 KEGG: rme:Rmet_1428 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation; SMART: Helix-hairpin-helix DNA-binding, class 1; NAD-dependent DNA ligase-like YP_867581.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity YP_867583.1 PFAM: regulatory protein, MerR; KEGG: tth:TT_P0056 probable transcriptional regulator YP_867584.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: sat:SYN_00226 signal transduction histidine kinase YP_867585.1 KEGG: syf:Synpcc7942_1337 integrins alpha chain; TIGRFAM: outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; FG-GAP repeat protein; SMART: Dystroglycan-type cadherin domain protein; Integrin alpha beta-propellor repeat protein YP_867586.1 PFAM: hypothetical protein; Sel1 domain protein repeat-containing protein; hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: mag:amb2236 TPR repeat YP_867587.1 KEGG: mag:amb2233 hypothetical protein YP_867588.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; CHASE2 domain protein; KEGG: mag:amb2235 adenylate cyclase YP_867589.1 PFAM: RNA-binding S4 domain protein; KEGG: bur:Bcep18194_A3836 RNA-binding S4 YP_867591.1 PFAM: protein of unknown function UPF0044; KEGG: son:SO1195 RNA-binding protein containing KH domain YP_867593.1 PFAM: methyltransferase small; KEGG: hch:HCH_02224 16S RNA G1207 methylase RsmC YP_867595.1 PFAM: regulatory protein, LuxR; KEGG: vvy:VVA0383 DNA-binding HTH domain-containing protein YP_867596.1 TIGRFAM: 6-phosphogluconolactonase; KEGG: pfo:Pfl_4362 6-phosphogluconolactonase YP_867597.1 KEGG: nfa:nfa860 hypothetical protein YP_867598.1 PFAM: beta-lactamase; KEGG: pca:Pcar_2012 metallo-beta-lactamase family protein YP_867599.1 PFAM: WGR domain protein; KEGG: noc:Noc_A0027 WGR YP_867600.1 PFAM: Mov34/MPN/PAD-1 family protein; KEGG: noc:Noc_0361 metal-dependent protease of the PAD1/JAB1 superfamily YP_867601.1 KEGG: gsu:GSU0536 conserved hypothetical protein TIGR00268 YP_867602.1 PFAM: protein kinase; sporulation domain protein; SMART: serine/threonine protein kinase; KEGG: mpa:MAP1049c PknE YP_867603.1 PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: mta:Moth_1516 methenyltetrahydrofolate cyclohydrolase YP_867604.1 PFAM: protein of unknown function DUF302; KEGG: mca:MCA1946 lipoprotein YP_867605.1 KEGG: bja:blr3514 probable diheme cytochrome C YP_867606.1 KEGG: aae:aq_1809 hypothetical protein YP_867607.1 KEGG: rpd:RPD_4255 twin-arginine translocation pathway signal YP_867608.1 KEGG: bja:blr3511 probable cytochrome C YP_867609.1 KEGG: aae:aq_1669 hypothetical protein YP_867610.1 KEGG: rpa:RPA4471 hypothetical protein YP_867611.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sec:SC3017 ABC-type cobalt transporter, ATPase component YP_867612.1 PFAM: sulfotransferase; hypothetical protein; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: gvi:gll1384 hypothetical protein YP_867613.1 KEGG: xcb:XC_1609 polynucleotide phosphorylase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein YP_867614.1 PFAM: ribosomal protein S15; KEGG: bmb:BruAb1_2141 RpsO, ribosomal protein S15 YP_867615.1 KEGG: mag:amb4115 pseudouridine synthase; TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein YP_867616.1 PFAM: ribosome-binding factor A; KEGG: tte:TTE1392 ribosome-binding factor A YP_867617.1 PFAM: protein of unknown function DUF503; KEGG: det:DET0968 hypothetical protein YP_867618.1 TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; translation initiation factor IF-2 domain protein; Initiation factor 2 associated domain protein,; KEGG: mag:amb4071 translation initiation factor 2 YP_867619.1 PFAM: protein of unknown function DUF448; KEGG: gsu:GSU1587 ribosomal protein L7Ae family protein YP_867620.1 KEGG: sme:SMc02912 probable N utilization substance protein A; TIGRFAM: transcription termination factor NusA; PFAM: RNA binding S1 domain protein; KH, type 1, domain protein; NusA N-terminal domain protein; SMART: KH domain protein YP_867621.1 PFAM: protein of unknown function DUF150; KEGG: gsu:GSU1585 hypothetical protein YP_867622.1 PFAM: septum formation initiator; KEGG: csa:Csal_2639 septum formation initiator YP_867623.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_867625.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_867626.1 PFAM: glycine cleavage T protein (aminomethyl transferase); glycine cleavage T-protein, C-terminal barrel; KEGG: rru:Rru_A2940 glycine cleavage T protein (aminomethyl transferase) YP_867627.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: pca:Pcar_3148 oxidoreductase, 2-nitropropane dioxygenase family YP_867628.1 KEGG: gsu:GSU0128 primosomal protein n'; TIGRFAM: primosomal protein N'; PFAM: helicase; type III restriction enzyme, res subunit; DEAD/DEAH box helicase; SMART: DEAD-like helicases-like YP_867629.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: cvi:CV4124 probable aminotransferase YP_867630.1 PFAM: diaminopimelate epimerase; KEGG: rru:Rru_A1183 diaminopimelate epimerase YP_867631.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: hch:HCH_00297 diaminopimelate decarboxylase YP_867632.1 TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: ppu:PP0184 argininosuccinate lyase YP_867633.1 PFAM: argininosuccinate synthase; KEGG: nmu:Nmul_A1043 argininosuccinate synthase YP_867634.1 KEGG: sat:SYN_02156 ornithine carbamoyltransferase; TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YP_867635.1 TIGRFAM: acetylornithine and succinylornithine aminotransferases; PFAM: aminotransferase class-III; KEGG: pca:Pcar_2414 acetylornithine aminotransferase YP_867636.1 KEGG: tbd:Tbd_0575 hypothetical protein YP_867637.1 PFAM: SirA family protein; KEGG: dar:Daro_3088 SirA-like YP_867639.1 KEGG: rru:Rru_A3632 hypothetical protein YP_867641.1 TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: chy:CHY_0010 stage 0 sporulation protein J YP_867642.1 PFAM: cobyrinic acid a,c-diamide synthase; KEGG: mag:amb0004 ATPase involved in chromosome partitioning YP_867645.1 TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: mag:amb0003 predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division YP_867646.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_867647.1 TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; KEGG: aae:aq_871 thiophene and furan oxidation protein YP_867648.1 PFAM: hypothetical protein; KEGG: gsu:GSU3466 membrane protein YP_867649.1 PFAM: protein of unknown function DUF37; KEGG: cya:CYA_2594 conserved hypothetical protein TIGR00278 YP_867650.1 TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: plu:plu4908 ribonuclease P protein component (RNaseP protein) (RNase P protein) (protein C5) YP_867651.1 PFAM: ribosomal protein L34; KEGG: smu:SMU.340 50S ribosomal protein L34