-- dump date 20140619_131559 -- class Genbank::CDS -- table cds_note -- id note YP_003162929.1 KEGG: cbh:CLC_0001 chromosomal replication initiation protein; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; SMART: replication initiation factor DnaA; ATPase AAA YP_003162930.1 TIGRFAM: S4 domain protein YaaA; PFAM: RNA-binding S4 domain protein; KEGG: cac:CAC0003 hypothetical protein YP_003162931.1 PFAM: protein of unknown function DUF1703; KEGG: fnu:FN1654 hypothetical protein YP_003162932.1 TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein; KEGG: fnu:FN2128 RecF protein YP_003162933.1 PFAM: protein of unknown function DUF721; KEGG: aae:aq_629 chromosome assembly protein YP_003162934.1 KEGG: rxy:Rxyl_2672 hypothetical protein YP_003162935.1 PFAM: hypothetical protein; TPR repeat-containing protein; SMART: hypothetical protein; KEGG: cth:Cthe_2680 peptidase S41 YP_003162936.1 KEGG: fjo:Fjoh_2518 hypothetical protein YP_003162937.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_003162938.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: cbb:CLD_3667 DMT family permease YP_003162939.1 PFAM: transporter permease; KEGG: bcl:ABC2895 enterochelin ABC transporter permease YP_003162940.1 PFAM: transporter permease; KEGG: bay:RBAM_004060 YclO YP_003162941.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cpy:Cphy_0733 ABC transporter YP_003162942.1 PFAM: periplasmic binding protein; KEGG: bcy:Bcer98_0362 periplasmic binding protein YP_003162943.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: fnu:FN0944 Na+ driven multidrug efflux pump YP_003162944.1 PFAM: pseudouridine synthase; KEGG: fnu:FN0651 ribosomal large subunit pseudouridine synthase D YP_003162945.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: spx:SPG_1848 MATE efflux family protein YP_003162946.1 KEGG: see:SNSL254_B0002 hypothetical protein YP_003162948.1 PFAM: protein of unknown function UPF0236; KEGG: tte:TTE2708 hypothetical protein YP_003162950.1 PFAM: anaerobic cobalt chelatase; KEGG: cpy:Cphy_1387 anaerobic cobalt chelatase YP_003162951.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: fnu:FN1521 peptide ABC transporter permease YP_003162952.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: fnu:FN1522 peptide ABC transporter permease YP_003162953.1 PFAM: extracellular solute-binding protein family 5; KEGG: fnu:FN1523 dipeptide-binding protein YP_003162954.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: fnu:FN1524 peptide ABC transporter ATP- binding protein YP_003162955.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: fnu:FN1525 peptide ABC transporter ATP- binding protein YP_003162956.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; uroporphyrinogen III synthase HEM4; KEGG: fnu:FN0644 uroporphyrinogen-III synthase YP_003162957.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_003162958.1 PFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like; shikimate/quinate 5-dehydrogenase; KEGG: fnu:FN0646 glutamyl-tRNA reductase YP_003162960.1 KEGG: psb:Psyr_0418 hypothetical protein YP_003162961.1 KEGG: mar:MAE_39710 ATPase YP_003162962.1 KEGG: spd:SPD_0716 IS630-Spn1, transposase Orf1 YP_003162964.1 PFAM: extracellular solute-binding protein family 5; KEGG: tte:TTE0208 ABC-type dipeptide/oligopeptide/nickel transporters, periplasmic components YP_003162965.1 KEGG: fnu:FN0721 hypothetical protein YP_003162966.1 cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase YP_003162967.1 TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: fnu:FN0975 CbiB protein YP_003162968.1 TIGRFAM: cobyric acid synthase CobQ; PFAM: CobB/CobQ domain protein glutamine amidotransferase; cobyrinic acid ac-diamide synthase; KEGG: fnu:FN0977 cobyric acid synthase YP_003162969.1 KEGG: amt:Amet_2984 hypothetical protein YP_003162970.1 KEGG: cdf:CD1266 ABC transporter permease protein YP_003162972.1 KEGG: hypothetical protein YP_003162974.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: cbe:Cbei_2373 MerR family transcriptional regulator YP_003162975.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: lin:lin0805 hypothetical protein YP_003162976.1 PFAM: protein of unknown function UPF0236; KEGG: tte:TTE2708 hypothetical protein YP_003162977.1 PFAM: transposase IS891/IS1136/IS1341 family; KEGG: bat:BAS3471 IS605 family transposase YP_003162978.1 TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS; KEGG: fnu:FN0912 cobalamin [5'-phosphate] synthase YP_003162979.1 PFAM: redoxin; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; KEGG: aoe:Clos_0675 redoxin domain-containing protein YP_003162980.1 KEGG: ssa:SSA_0499 ABC-type dipeptide transporter, periplasmic component, TIGRFAM: nickel ABC transporter periplasmic nickel- binding protein; PFAM: extracellular solute-binding protein family 5 YP_003162981.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: fnu:FN1503 nickel transporter permease NikB YP_003162982.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: san:gbs1575 hypothetical protein YP_003162983.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ssa:SSA_0503 peptide ABC transporter ATP- binding protein YP_003162984.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ssa:SSA_0504 peptide ABC transporter ATP- binding protein YP_003162985.1 PFAM: ethanolamine utilisation EutQ family protein; protein of unknown function DUF861 cupin_3; KEGG: ctc:CTC02163 ethanolamine utilization protein (transcriptional regulator) YP_003162986.1 PFAM: ethanolamine utilisation protein EutH; KEGG: fnu:FN0089 ethanolamine permease YP_003162987.1 PFAM: microcompartments protein; KEGG: fnu:FN0081 ethanolamine utilization protein EutL YP_003162988.1 catalyzes the formation of acetaldehyde from ethanolamine YP_003162989.1 PFAM: ethanolamine ammonia lyase large subunit; KEGG: ctc:CTC02176 ethanolamine ammonia-lyase heavy chain YP_003162990.1 ethanolamine utilization protein EutA YP_003162991.1 PFAM: histidine kinase dimerisation/phosphoacceptor; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: ctc:CTC02178 ethanolamine utilization sensory transduction histidine kinase YP_003162992.1 PFAM: response regulator receiver; ANTAR domain protein; SMART: response regulator receiver; KEGG: amt:Amet_0252 response regulator receiver/ANTAR domain-containing protein YP_003162993.1 PFAM: iron-containing alcohol dehydrogenase; 3- dehydroquinate synthase; KEGG: fnu:FN0092 NADPH-dependent butanol dehydrogenase YP_003162994.1 KEGG: fnu:FN0088 hypothetical protein YP_003162995.1 PFAM: ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: dde:Dde_3273 ethanolamine utilization protein EutN YP_003162996.1 KEGG: fnu:FN0086 hypothetical protein YP_003162997.1 PFAM: propanediol utilization protein; KEGG: ssa:SSA_0527 propanediol utilization protein PduL YP_003162998.1 PFAM: cobalamin adenosyltransferase; KEGG: ctc:CTC02171 cobalamin adenosyltransferase YP_003162999.1 TIGRFAM: acetaldehyde dehydrogenase (acetylating); KEGG: cno:NT01CX_0488 acetaldehyde dehydrogenase / alcohol dehydrogenase-like protein YP_003163000.1 PFAM: microcompartments protein; KEGG: fnu:FN0083 ethanolamine utilization protein EutM precursor YP_003163001.1 PFAM: microcompartments protein; KEGG: cpf:CPF_0894 ethanolamine utilization protein YP_003163002.1 TIGRFAM: ethanolamine utilization protein, EutP; KEGG: amt:Amet_0251 ethanolamine utilization protein, EutP YP_003163003.1 PFAM: microcompartments protein; KEGG: cdf:CD1908 ethanolamine/propanediol utilization protein YP_003163004.1 PFAM: microcompartments protein; KEGG: fnu:FN0083 ethanolamine utilization protein EutM precursor YP_003163005.1 PFAM: microcompartments protein; KEGG: fnu:FN0083 ethanolamine utilization protein EutM precursor YP_003163006.1 KEGG: fma:FMG_1585 hypothetical protein YP_003163007.1 TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin Txe/YoeB; KEGG: cyt:cce_4261 addiction module toxin, Txe/YoeB YP_003163008.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: smu:SMU.121 DinF, damage-inducible protein; cation efflux pump (multidrug resistance protein) YP_003163009.1 PFAM: helix-turn-helix HxlR type; KEGG: cac:CAC3399 transcriptional regulator YP_003163011.1 KEGG: esi:Exig_1265 CopG/DNA-binding domain- containing protein YP_003163012.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: fnu:FN0211 plasmid addiction system poison protein YP_003163013.1 TIGRFAM: cobalamin biosynthesis protein CbiM; PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: cbb:CLD_3643 cobalamin biosynthesis protein CbiM YP_003163014.1 PFAM: Cobalt transporter CbiN; KEGG: cno:NT01CX_1330 cobalt transporter CbiN YP_003163015.1 TIGRFAM: cobalt ABC transporter inner membrane protein CbiQ; PFAM: cobalt transporter; KEGG: cno:NT01CX_1331 cobalt transport protein YP_003163016.1 KEGG: mbu:Mbur_1697 cobalt ABC transporter ATPase subunit; TIGRFAM: cobalt ABC transporter ATPase; PFAM: ABC transporter related; SMART: ATPase AAA YP_003163017.1 TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: CobB/CobQ domain protein glutamine amidotransferase; cobyrinic acid ac-diamide synthase; KEGG: fnu:FN0972 cobyrinic acid a,c-diamide synthase YP_003163018.1 PFAM: precorrin-8X methylmutase CbiC/CobH; KEGG: fnu:FN0970 precorrin-8X methylmutase YP_003163019.1 TIGRFAM: cobalamin biosynthesis protein CbiD; PFAM: cobalamin (vitamin B12) biosynthesis CbiD protein; KEGG: amt:Amet_0070 cobalamin biosynthesis protein CbiD YP_003163020.1 KEGG: swo:Swol_0984 hypothetical protein YP_003163021.1 TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: fnu:FN0959 precorrin-2 C20-methyltransferase YP_003163022.1 KEGG: rty:RT0621 permease YP_003163023.1 KEGG: fnu:FN0958 hypothetical protein YP_003163024.1 PFAM: protein of unknown function DUF1016; KEGG: fma:FMG_0062 hypothetical protein YP_003163025.1 PFAM: helix-turn-helix HxlR type; KEGG: fnu:FN0589 MarR family transcriptional regulator YP_003163026.1 KEGG: fnu:FN0390 hypothetical protein YP_003163028.1 KEGG: hypothetical protein YP_003163029.1 TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: fnu:FN0957 precorrin-4 C11-methyltransferase YP_003163031.1 KEGG: conserved hypothetical protein YP_003163032.1 KEGG: lsa:LSA0263 integral membrane protein YP_003163033.1 KEGG: hypothetical protein YP_003163034.1 KEGG: hypothetical protein YP_003163035.1 KEGG: cac:CAC0709 glyceraldehyde 3-phosphate dehydrogenase, gene GapC; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_003163036.1 PFAM: anaerobic cobalt chelatase; KEGG: tde:TDE2656 cobalt chelatase YP_003163037.1 PFAM: cupin; KEGG: fnu:FN1305 cytoplasmic protein YP_003163038.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: fma:FMG_0285 methyltransferase YP_003163039.1 KEGG: fma:FMG_0285 methyltransferase YP_003163040.1 PFAM: small multi-drug export; KEGG: cbf:CLI_1102 transporter YP_003163041.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_003163042.1 TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: fnu:FN1722 glucose inhibited division protein B YP_003163043.1 TIGRFAM: oligoendopeptidase, M3 family; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: bce:BC1338 oligoendopeptidase F YP_003163044.1 KEGG: amt:Amet_2984 hypothetical protein YP_003163045.1 TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta; KEGG: cbe:Cbei_0577 cysteine synthase YP_003163046.1 TIGRFAM: serine O-acetyltransferase; KEGG: ctc:CTC00351 serine acetyltransferase YP_003163047.1 TIGRFAM: flavodoxin; PFAM: flavodoxin/nitric oxide synthase; KEGG: syf:Synpcc7942_1541 flavodoxin FldA YP_003163048.1 TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; KEGG: fnu:FN1921 biotin operon repressor YP_003163049.1 TIGRFAM: degV family protein; PFAM: Dak phosphatase; DegV family protein; KEGG: fnu:FN1927 DegV protein YP_003163050.1 TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: fnu:FN0213 N-acylneuraminate-9-phosphatase YP_003163051.1 KEGG: dps:DP0755 serine protease DegQ [precursor]; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein YP_003163052.1 PFAM: YCII-related; KEGG: cbe:Cbei_3842 YCII-related YP_003163053.1 PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; phosphopantetheine- binding; SMART: phospholipid/glycerol acyltransferase; KEGG: aae:aq_999 long-chain-fatty-acid CoA ligase YP_003163055.1 TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: chy:CHY_2365 lysyl-tRNA synthetase YP_003163057.1 KEGG: nph:NP2154A flagella accessory protein FlaCE YP_003163058.1 PFAM: protein of unknown function DUF163; KEGG: fnu:FN0463 cytoplasmic protein YP_003163059.1 TIGRFAM: DNA mismatch repair protein MutL; PFAM: MutL dimerisation; DNA mismatch repair protein domain protein; KEGG: fnu:FN0462 DNA mismatch repair protein MutL YP_003163060.1 KEGG: cbk:CLL_A2357 lipoprotein YP_003163061.1 KEGG: cth:Cthe_3139 hypothetical protein YP_003163062.1 TIGRFAM: diphosphomevalonate decarboxylase; PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: sgo:SGO_0240 diphosphomevalonate decarboxylase YP_003163063.1 TIGRFAM: mevalonate kinase; PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: sak:SAK_1357 mevalonate kinase YP_003163065.1 KEGG: fnu:FN1393 signal recognition particle, subunit FFH/SRP54; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: ATPase AAA YP_003163066.1 PFAM: helicase; SMART: helicase domain protein; DEAD-like helicases; KEGG: hmo:HM1_3006 SNF2 family RNA helicase YP_003163067.1 KEGG: hmo:HM1_3005 hypothetical protein YP_003163068.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: tex:Teth514_1828 site-specific DNA- methyltransferase (adenine-specific) YP_003163069.1 KEGG: hps:HPSH_07785 hypothetical protein YP_003163071.1 TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: cco:CCC13826_1068 addiction module antitoxin YP_003163072.1 KEGG: spa:M6_Spy1340 unknown phage protein YP_003163073.1 PFAM: type III restriction protein res subunit; KEGG: hmo:HM1_3003 type III restriction enzyme, res subunit YP_003163075.1 KEGG: hps:HPSH_08020 helicase YP_003163076.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_003163077.1 PFAM: protein of unknown function UPF0005; KEGG: fnu:FN0866 integral membrane protein YP_003163078.1 KEGG: mmz:MmarC7_1361 polysaccharide biosynthesis protein YP_003163079.1 KEGG: gfo:GFO_0498 hypothetical protein YP_003163080.1 TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: fnu:FN1437 50S ribosomal protein L28P YP_003163081.1 PFAM: protein of unknown function DUF1275; KEGG: cdf:CD0702 hypothetical protein YP_003163082.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: dsy:DSY1198 hypothetical protein YP_003163083.1 KEGG: fnu:FN1660 ATP-dependent DNA helicase RecG; TIGRFAM: ATP-dependent DNA helicase RecG; PFAM: DEAD/DEAH box helicase; helicase; type III restriction protein res subunit; nucleic acid binding OB-fold tRNA/helicase-type; SMART: DEAD-like helicases ; helicase domain protein YP_003163084.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: ckl:CKL_0691 transporter protein YP_003163085.1 KEGG: mla:Mlab_0191 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase YP_003163086.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: fnu:FN1489 methionyl-tRNA formyltransferase YP_003163087.1 modulates transcription in response to the NADH/NAD(+) redox state YP_003163088.1 PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: sul:SYO3AOP1_1067 methenyltetrahydrofolate cyclohydrolase YP_003163089.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: ftn:FTN_0563 acetyl-CoA carboxylase, biotin carboxy carrier protein subunit YP_003163090.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: fnu:FN1486 integral membrane protein YP_003163091.1 PFAM: NUDIX hydrolase; KEGG: lic:LIC20067 MutT-like protein YP_003163092.1 KEGG: cpr:CPR_1905 adenine phosphoribosyltransferase; TIGRFAM: adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_003163094.1 KEGG: fph:Fphi_0889 hypothetical protein YP_003163095.1 KEGG: bcz:BCZK0923 ankyrin repeat-containing protein YP_003163096.1 KEGG: hypothetical protein YP_003163097.1 KEGG: conserved hypothetical protein YP_003163098.1 SMART: hypothetical protein; KEGG: fnu:FN0847 hypotheticalprotein YP_003163099.1 PFAM: helix-turn-helix protein YlxM/p13 family protein; KEGG: fnu:FN1394 signal recognition particle associated protein YP_003163100.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: lac:LBA1577 transcriptional regulator YP_003163101.1 PFAM: glycoside hydrolase family 1; KEGG: efa:EF0271 6-phospho-beta-glucosidase YP_003163102.1 KEGG: fma:FMG_1610 hypothetical protein YP_003163103.1 KEGG: efa:EF1939 hypothetical protein YP_003163104.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: fnu:FN1050 lactoylglutathione lyase YP_003163105.1 KEGG: eca:ECA1475 hypothetical protein YP_003163106.1 KEGG: cts:Ctha_2029 hypothetical protein YP_003163107.1 KEGG: ckl:CKL_2457 hypothetical protein YP_003163108.1 PFAM: phospholipase/carboxylesterase; KEGG: cbe:Cbei_3272 glucan-binding protein D; BglB-like protein YP_003163109.1 KEGG: spw:SPCG_1982 IS630-Spn1, transposase Orf1 YP_003163110.1 KEGG: tde:TDE0586 hypothetical protein YP_003163111.1 PFAM: hypothetical protein; KEGG: tde:TDE0275 CAAX amino terminal protease family protein YP_003163112.1 TIGRFAM:UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-di aminopimelate/D-alanyl-D-alanylligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: fnu:FN1461 histidinol-phosphatase YP_003163113.1 KEGG: fnu:FN1459 phospho-N-acetylmuramoyl- pentapeptide-transferase; TIGRFAM:phospho-N-acetylmuramoyl-pentapeptide-transf erase; PFAM: glycosyl transferase family 4 YP_003163114.1 TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: fnu:FN1458 UDP-N-acetylmuramoylalanine--D- glutamate ligase YP_003163115.1 PFAM: cell cycle protein; KEGG: ckl:CKL_1187 hypothetical protein YP_003163116.1 PFAM: glycosyl transferase family 28; glycosyltransferase 28 domain; KEGG: fnu:FN1457 UDP-N-acetylglucosamine-N- acetylmuramyl-pentapeptide pyrophosphoryl-undecaprenol N- acetylglucosamine transferase YP_003163117.1 TIGRFAM: UDP-N-acetylmuramate/alanine ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: fnu:FN1456 UDP-N-acetylmuramate--alanine ligase YP_003163118.1 KEGG: fnu:FN1455 UDP-N- acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; FAD linked oxidase domain protein YP_003163119.1 PFAM: polypeptide-transport-associated domain protein FtsQ-type; KEGG: fnu:FN1453 hypothetical protein YP_003163120.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_003163121.1 TIGRFAM: ribosomal protein S6; PFAM: ribosomal protein S6; KEGG: fnu:FN1657 30S ribosomal protein S6P YP_003163122.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: fnu:FN1304 single-strand DNA binding protein YP_003163123.1 TIGRFAM: ribosomal protein S18; PFAM: ribosomal protein S18; KEGG: fnu:FN1656 30S ribosomal protein S18P YP_003163124.1 PFAM: transposase IS200-family protein; KEGG: ctc:CTC00621 transposase YP_003163125.1 KEGG: afl:Aflv_2013 transposase; TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB YP_003163126.1 KEGG: hypothetical protein YP_003163127.1 KEGG: sml:Smlt1384 hypothetical protein YP_003163128.1 TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: oca:OCAR_4903 CrcB protein YP_003163129.1 PFAM: major facilitator superfamily MFS_1; KEGG: pmo:Pmob_1458 major facilitator transporter YP_003163131.1 KEGG: mmz:MmarC7_0586 SMC domain-containing protein YP_003163133.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: fnu:FN2102 ABC transporter ATP-binding protein YP_003163135.1 PFAM: hypotheticalprotein; Sel1 domain protein repeat-containing protein; SMART: hypothetical protein; Sel1 domain protein repeat-containing protein; KEGG: cts:Ctha_0439 TPR repeat-containing protein YP_003163136.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: fma:FMG_0194 cell filamentation protein YP_003163137.1 KEGG: fnu:FN1292 hypothetical protein YP_003163138.1 KEGG: KRT9; keratin 9 ; K07604 type I keratin, acidic YP_003163139.1 PFAM: Sel1 domain protein repeat-containing protein; SMART: hypothetical protein; Sel1 domain protein repeat-containing protein; KEGG: aas:Aasi_0854 hypothetical protein YP_003163140.1 PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: cbl:CLK_3538 PAP2 family protein YP_003163141.1 PFAM: protein of unknown function DUF333; KEGG: spl:Spea_0124 hypothetical protein YP_003163142.1 PFAM: carbon starvation protein CstA; KEGG: fnu:FN0221 carbon starvation protein A YP_003163143.1 PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; KEGG: cdf:CD0784 N-acetylmuramoyl-L- alanine amidase YP_003163144.1 PFAM: ATPase AAA; KEGG: mmq:MmarC5_0620 transcriptional regulator YP_003163145.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_003163146.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_003163147.1 TIGRFAM: translation elongation factor G; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; elongation factor G domain IV; KEGG: fnu:FN1556 protein translation elongation factor G (EF-G) YP_003163148.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_003163149.1 TIGRFAM: ribosomal protein S10; PFAM: ribosomal protein S10; KEGG: fnu:FN1646 30S ribosomal protein S10P YP_003163150.1 PFAM: ribosomal protein L3; KEGG: fnu:FN1645 50S ribosomal protein L3P YP_003163151.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_003163152.1 PFAM: ribosomal protein L25/L23; KEGG: pth:PTH_0322 50S ribosomal protein L23 YP_003163153.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_003163154.1 TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; KEGG: sha:SH0806 30S ribosomal protein S19 YP_003163155.1 TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17; KEGG: fnu:FN1640 50S ribosomal protein L22P YP_003163156.1 KEGG: fnu:FN1639 30S ribosomal protein S3P; TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; KH type 2 domain protein; ribosomal protein S3 domain; SMART: KH domain protein YP_003163157.1 TIGRFAM: ribosomal protein L16; PFAM: ribosomal protein L16; KEGG: fnu:FN1638 50S ribosomal protein L16 YP_003163158.1 TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: lsp:Bsph_4606 50S ribosomal protein L29 YP_003163159.1 PFAM: ribosomal protein S17; KEGG: csc:Csac_2278 30S ribosomal protein S17 YP_003163160.1 TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; KEGG: fnu:FN1635 50S ribosomal protein L14P YP_003163161.1 TIGRFAM: ribosomal protein L24; KEGG: dge:Dgeo_1856 50S ribosomal protein L24 YP_003163162.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_003163163.1 PFAM: ribosomal protein S14; KEGG: fnu:FN1631 SSU ribosomal protein S14P YP_003163164.1 PFAM: ribosomal protein S8; KEGG: fnu:FN1630 30S ribosomal protein S8P YP_003163165.1 PFAM: ribosomal protein L6; KEGG: efa:EF0221 50S ribosomal protein L6 YP_003163166.1 TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: gka:GK0122 50S ribosomal protein L18 YP_003163167.1 TIGRFAM: ribosomal protein S5; PFAM: ribosomal protein S5 ; ribosomal protein S5 domain protein; KEGG: fnu:FN1627 30S ribosomal protein S5P YP_003163168.1 TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30; KEGG: fnu:FN1626 50S ribosomal protein L30P YP_003163169.1 TIGRFAM: ribosomal protein L15; PFAM: ribosomal protein L15; KEGG: fnu:FN1625 50S ribosomal protein L15P YP_003163170.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_003163171.1 SMART: SH3 domain protein YP_003163172.1 KEGG: fnu:FN1986 hypothetical protein YP_003163173.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: lpl:lp_0712 phosphonates ABC transporter permease protein YP_003163174.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: lpl:lp_0713 phosphonates ABC transporter permease protein YP_003163175.1 KEGG: oih:OB0977 phosphonate ABC transporter ATP- binding protein; TIGRFAM: phosphonate ABC transporter ATPase; PFAM: ABC transporter related; SMART: ATPase AAA YP_003163176.1 KEGG: hypothetical protein YP_003163177.1 KEGG: cbf:CLI_3758 peptidylprolyl isomerase YP_003163178.1 PFAM: phosphoglycerate mutase; KEGG: aoe:Clos_1154 phosphoglycerate mutase YP_003163179.1 TIGRFAM: precorrin-6x reductase; PFAM: precorrin-6x reductase CbiJ/CobK; KEGG: fnu:FN0950 precorrin-6X reductase YP_003163180.1 PFAM: Domain of unknown function DUF1858; KEGG: aoe:Clos_0147 hypothetical protein YP_003163181.1 PFAM: cobalamin synthesis protein P47K; KEGG: aoe:Clos_0148 cobalamin synthesis protein P47K YP_003163182.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: aoe:Clos_0149 ABC transporter YP_003163183.1 KEGG: nmn:NMCC_0596 hypothetical protein YP_003163188.1 PFAM: major facilitator superfamily MFS_1; KEGG: hac:Hac_0765 MccC-like protein YP_003163189.1 KEGG: gka:GK2575 peroxiredoxin; TIGRFAM: peroxiredoxin; PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin YP_003163190.1 KEGG: abm:ABSDF1486 alkyl hydroperoxide reductase subunit, FAD/NAD(P)-binding, detoxification of hydroperoxides YP_003163191.1 KEGG: apj:APJL_2082 thiol-disulfide isomerase and thioredoxins YP_003163192.1 PFAM: TraX family protein; KEGG: cbk:CLL_A2054 hypothetical protein YP_003163193.1 KEGG: conserved hypothetical protein YP_003163194.1 PFAM: beta-lactamase; KEGG: cac:CAC3686 metallo-beta-lactamase superfamily hydrolase YP_003163195.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: fnu:FN1016 lipid A biosynthesis lauroyl acyltransferase YP_003163196.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: glo:Glov_2205 radical SAM protein YP_003163197.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: amt:Amet_3280 radical SAM domain-containing protein YP_003163198.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mta:Moth_0831 radical SAM family protein YP_003163199.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mta:Moth_0831 radical SAM family protein YP_003163200.1 PFAM: GH3 auxin-responsive promoter; KEGG: acb:A1S_1770 hypothetical protein YP_003163201.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: glo:Glov_2205 radical SAM protein YP_003163202.1 KEGG: npu:Npun_R4696 hypothetical protein YP_003163203.1 KEGG: csc:Csac_2422 O-methyltransferase-like protein YP_003163204.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: fnu:FN1320 peptidyl-prolyl cis-trans isomerase YP_003163205.1 KEGG: hypothetical protein YP_003163206.1 KEGG: fnu:FN1334 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin YP_003163207.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: plt:Plut_0157 hypothetical protein YP_003163208.1 PFAM: phosphoglycerate kinase; KEGG: lin:lin2552 phosphoglycerate kinase YP_003163209.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cpy:Cphy_0287 GCN5-related N- acetyltransferase YP_003163210.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: fma:FMG_1443 cobalt ABC transporter ATP- binding protein YP_003163212.1 KEGG: fnu:FN0994 hypothetical protein YP_003163213.1 PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein; KEGG: lil:LA4133 Appr-1''-p processing enzyme family protein YP_003163214.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: fma:FMG_1444 cobalt ABC transporter ATP- binding protein YP_003163215.1 PFAM: cobalt transporter; KEGG: fno:Fnod_1257 cobalt transporter YP_003163216.1 KEGG: fma:FMG_1446 hypothetical protein YP_003163217.1 class B; non-specific; catalyzes the dephosphorylation of organic phosphomonoesters; also has phosphotransferase activity YP_003163219.1 PFAM: von Willebrand factor type A; KEGG: fnu:FN0557 hypothetical protein YP_003163220.1 PFAM: regulatory protein TetR; KEGG: cbt:CLH_0731 TetR family transcriptional regulator YP_003163221.1 PFAM: outer membrane efflux protein; KEGG: fnu:FN1273 outer membrane protein TolC YP_003163222.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: drm:Dred_2949 RND family efflux transporter MFP subunit YP_003163223.1 PFAM: acriflavin resistance protein; KEGG: fnu:FN1275 acriflavin resistance protein B YP_003163224.1 KEGG: fnu:FN1276 hypothetical protein YP_003163225.1 PFAM: Tubulin/FtsZ domain protein; Tubulin/FtsZ GTPase; KEGG: fnu:FN1451 cell division protein FtsZ YP_003163226.1 PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: fnu:FN0190 two-component sensor kinase YesM YP_003163227.1 PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: response regulator receiver; helix-turn- helix- domain containing protein AraC type; KEGG: fnu:FN0189 two-component response regulator YesN YP_003163228.1 PFAM: redoxin; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; KEGG: hip:CGSHiEE_04855 hypothetical protein YP_003163229.1 PFAM: cytochrome C biogenesis protein transmembrane region; KEGG: hiq:CGSHiGG_01145 hypothetical protein YP_003163230.1 TIGRFAM: methionine-R-sulfoxide reductase; peptide methionine sulfoxide reductase; PFAM: methionine sulfoxide reductase A; methionine sulfoxide reductase B; KEGG: hin:HI1455 bifunctional methionine sulfoxide reductase A/B protein YP_003163231.1 KEGG: dps:DP1416 hypothetical protein YP_003163232.1 TIGRFAM: rfaE bifunctional protein; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; KEGG: fnu:FN0930 glycerol-3-phosphate cytidylyltransferase YP_003163233.1 PFAM: protein of unknown function UPF0079; KEGG: fnu:FN0929 ATP/GTP hydrolase YP_003163234.1 PFAM: peptidase M22 glycoprotease; KEGG: cbe:Cbei_0468 peptidase M22, glycoprotease YP_003163235.1 KEGG: fnu:FN1074 signal recognition particle receptor FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: ATPase AAA YP_003163236.1 TIGRFAM: phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; KEGG: abu:Abu_0493 phosphate acetyltransferase YP_003163237.1 TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: fnu:FN1171 acetate kinase YP_003163238.1 PFAM: flavodoxin/nitric oxide synthase; KEGG: ckl:CKL_2165 flavodoxin YP_003163239.1 KEGG: fnu:FN1218 hypothetical protein YP_003163240.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_003163241.1 PFAM: protein of unknown function DUF558; KEGG: fnu:FN1215 cytoplasmic protein YP_003163242.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: bcy:Bcer98_3056 iojap-like protein YP_003163243.1 KEGG: fnu:FN1211 cell division protein FtsI; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain YP_003163244.1 PFAM: beta-lactamase; RNA- metabolising metallo-beta-lactamase; KEGG: fnu:FN1210 metal dependent hydrolase YP_003163245.1 PFAM: protein of unknown function UPF0044; KEGG: fnu:FN1209 RNA binding protein YP_003163246.1 PFAM: acid phosphatase/vanadium-dependent haloperoxidase related; KEGG: syn:slr1394 hypothetical protein YP_003163248.1 KEGG: tte:TTE2708 hypothetical protein YP_003163249.1 KEGG: aoe:Clos_1606 hemolysin A; TIGRFAM: hemolysin A; PFAM: RNA-binding S4 domain protein; ribosomal RNA methyltransferase RrmJ/FtsJ; SMART: RNA-binding S4 domain protein YP_003163250.1 KEGG: fnu:FN1205 protease; TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; SMART: peptidase S41; PDZ/DHR/GLGF domain protein YP_003163251.1 PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: fnu:FN1204 methyltransferase YP_003163252.1 PFAM: GTP-binding protein HSR1-related; KEGG: fnu:FN1203 GTP-binding protein YP_003163253.1 PFAM: glycosyl transferase group 1; KEGG: tde:TDE2034 glycosyl transferase, group 1 family protein YP_003163254.1 PFAM: glycosyl transferase group 1; KEGG: tle:Tlet_0010 glycosyl transferase group 1 YP_003163255.1 PFAM: cupin; KEGG: fnu:FN1972 hypothetical protein YP_003163256.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: bpu:BPUM_0340 L-cystine ABC transporter substrate-binding protein YP_003163257.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: bpu:BPUM_0340 L-cystine ABC transporter substrate-binding protein YP_003163258.1 TIGRFAM: polar amino acid ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: llm:llmg_1591 amino-acid ABC transporter permease protein YP_003163259.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cac:CAC0879 ABC-type polar amino acid transporter, ATPase component YP_003163260.1 TIGRFAM: polar amino acid ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: cbe:Cbei_2510 polar amino acid ABC transporter inner membrane protein YP_003163261.1 TIGRFAM: polar amino acid ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: cco:CCC13826_0662 SugE protein YP_003163262.1 PFAM: ABC transporter; SMC domain protein; SMART: ATPase AAA; KEGG: asu:Asuc_1949 ABC transporter YP_003163263.1 PFAM: sodium:dicarboxylate symporter; KEGG: sen:SACE_5070 Na(+)/glutamate:H(+) symporter YP_003163264.1 PFAM: RimK domain protein ATP-grasp; KEGG: bwe:BcerKBAB4_0879 RimK domain-containing protein ATP-grasp YP_003163265.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: ccv:CCV52592_0290 acriflavine resistance protein YP_003163267.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; RNA binding S1 domain protein; KEGG: fnu:FN0065 transcription accessory protein YP_003163268.1 TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: cbh:CLC_1058 L-lactate permease YP_003163269.1 TIGRFAM: isoleucyl-tRNA synthetase; KEGG: fnu:FN0067 isoleucyl-tRNA synthetase YP_003163270.1 TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; KEGG: fnu:FN0068 lipoprotein signal peptidase YP_003163271.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_003163272.1 KEGG: fnu:FN1701 ABC transporter ATP-binding protein YP_003163273.1 KEGG: fnu:FN1700 hypothetical protein YP_003163274.1 KEGG: fnu:FN0070 glycyl-tRNA synthetase beta chain; TIGRFAM: glycyl-tRNA synthetase subunit beta YP_003163275.1 PFAM: OmpA/MotB domain protein; KEGG: lch:Lcho_0958 OmpA/MotB domain-containing protein YP_003163276.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; KEGG: fnu:FN1782 phosphocarrier protein HPr YP_003163277.1 PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; KEGG: fnu:FN1781 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_003163278.1 PFAM: aminotransferase class IV; KEGG: lbl:LBL_0002 branched-chain amino acid aminotransferase YP_003163279.1 KEGG: cbf:CLI_1495 hypothetical protein YP_003163280.1 PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: ckl:CKL_1807 hypothetical protein YP_003163281.1 KEGG: cbe:Cbei_4190 sulfate ABC transporter ATPase subunit; TIGRFAM: sulfate ABC transporter ATPase; PFAM: ABC transporter related; SMART: ATPase AAA YP_003163282.1 catalyzes the reduction of adenosine 5'-phosphosulfate to AMP and sulfite YP_003163283.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cpy:Cphy_1831 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_003163284.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_003163285.1 KEGG: cpy:Cphy_1833 sulfate adenylyltransferase, large subunit; TIGRFAM: sulfate adenylyltransferase, large subunit; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein YP_003163286.1 TIGRFAM: sulfate ABC transporter periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: cpy:Cphy_1826 sulfate ABC transporter periplasmic sulfate-binding protein YP_003163287.1 TIGRFAM: sulfate ABC transporter inner membrane protein CysT; sulfate ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: cpy:Cphy_1827 sulfate ABC transporter inner membrane protein CysT YP_003163288.1 TIGRFAM: sulfate ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: cpy:Cphy_1828 sulfate ABC transporter inner membrane protein YP_003163289.1 TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: fnu:FN1170 pyruvate-flavodoxin oxidoreductase YP_003163290.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: fnu:FN0374 single-stranded-DNA-specific exonuclease RecJ YP_003163291.1 PFAM: diacylglycerol kinase; SMART: diacylglycerol kinase; KEGG: cth:Cthe_3168 lipid kinase YP_003163292.1 KEGG: lga:LGAS_0819 hypothetical protein YP_003163293.1 PFAM: Domain of unknown function DUF1957; glycoside hydrolase family 57; KEGG: ank:AnaeK_1135 domain of unknown function DUF1957 YP_003163294.1 KEGG: pfo:Pfl01_2683 outer membrane autotransporter barrel YP_003163295.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: fnu:FN1519 23S rRNA methyltransferase YP_003163296.1 KEGG: conserved hypothetical protein YP_003163297.1 TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; KEGG: fnu:FN0482 50S ribosomal protein L31P YP_003163298.1 KEGG: lwe:lwe0908 secreted protein YP_003163299.1 PFAM: FeoA family protein YP_003163300.1 KEGG: cdf:CD1480 hypothetical protein YP_003163301.1 PFAM: integrase family protein; KEGG: aoe:Clos_1046 integrase family protein YP_003163302.1 KEGG: sah:SaurJH1_2090 hypothetical protein YP_003163303.1 KEGG: efa:EFA0012 replication protein YP_003163304.1 SMART: helix-turn-helix domain protein; KEGG: cdf:CD2949 phage repressor YP_003163306.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: cdf:CD1573 transcriptional regulator YP_003163308.1 PFAM: protein of unknown function DUF262; protein of unknown function DUF1524 RloF; KEGG: ctc:CTC00689 hypothetical protein YP_003163309.1 KEGG: cbt:CLH_2507 hypothetical protein YP_003163310.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bsu:BSU04820 hypothetical protein YP_003163311.1 KEGG: conserved hypothetical protein YP_003163312.1 PFAM: amino acid-binding ACT domain protein; KEGG: mba:Mbar_A3182 hypothetical protein YP_003163313.1 PFAM: protein of unknown function DUF711; KEGG: mma:MM_0081 hypothetical protein YP_003163314.1 TIGRFAM: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: methyltransferase small; KEGG: cbb:CLD_3622 precorrin-6Y C5,15- methyltransferase (decarboxylating), CbiT subunit YP_003163315.1 PFAM: protein of unknown function DUF488; KEGG: tde:TDE0248 hypothetical protein YP_003163316.1 PFAM: NUDIX hydrolase; KEGG: fnu:FN1791 mutator MutT protein YP_003163317.1 KEGG: viral A-type inclusion protein YP_003163318.1 catalyzes the formation of cobalt-precorrin 4 from cobalt-precorrin 3 YP_003163319.1 TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: fnu:FN0951 precorrin-3B C17-methyltransferase YP_003163320.1 KEGG: ccv:CCV52592_1393 high-molecular- weight surface-exposed protein YP_003163321.1 KEGG: spb:M28_Spy1896 transposase YP_003163322.1 KEGG: ctc:CTC00561 argininosuccinate synthase; TIGRFAM: argininosuccinate synthase; PFAM: argininosuccinate synthase YP_003163323.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: fnu:FN0342 peptidyl-prolyl cis-trans isomerase YP_003163325.1 PFAM: TraX family protein; KEGG: cpy:Cphy_3371 hypothetical protein YP_003163326.1 KEGG: fnu:FN0057 endonuclease III; TIGRFAM: endonuclease III; PFAM: HhH-GPD family protein; helix-hairpin-helix motif; SMART: HhH-GPD family protein YP_003163327.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: fnu:FN0060 D-alanyl-D-alanine carboxypeptidase YP_003163328.1 PFAM: OmpA/MotB domain protein; KEGG: fnu:FN0253 outer membrane protein YP_003163329.1 PFAM: OstA family protein; KEGG: glo:Glov_1235 organic solvent tolerance protein YP_003163330.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: fnu:FN1724 potassium uptake protein KtrA YP_003163331.1 KEGG: fnu:FN1725 potassium uptake protein KtrB; TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter YP_003163332.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: cpr:CPR_0773 MarR family transcriptional regulator YP_003163333.1 PFAM: protein of unknown function UPF0118; KEGG: efa:EF0699 hypothetical protein YP_003163334.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_003163335.1 PFAM: protein of unknown function DUF441; KEGG: lpl:lp_1894 integral membrane protein YP_003163336.1 KEGG: fnu:FN0033 hypothetical protein YP_003163337.1 KEGG: cdf:CD0341 hypothetical protein YP_003163338.1 PFAM: ABC transporter; transporter permease protein; KEGG: dsy:DSY0095 hypothetical protein YP_003163339.1 PFAM: ABC transporter; transporter permease protein; KEGG: dsy:DSY0094 hypothetical protein YP_003163340.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ayw:AYWB_623 ABC-type Mn/Zn transporter, ATP-binding protein YP_003163341.1 PFAM: periplasmic solute binding protein; KEGG: fnu:FN0668 high-affinity zinc uptake system protein ZnuA precursor YP_003163342.1 PFAM: iron dependent repressor; FeoA family protein; regulatory protein MarR; SMART: iron dependent repressor; KEGG: efa:EF1005 iron-dependent repressor YP_003163343.1 PFAM: BioY protein; KEGG: rca:Rcas_0018 BioY protein YP_003163344.1 KEGG: fnu:FN1271 protease IV; TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: peptidase S49 YP_003163345.1 TIGRFAM: sugar fermentation stimulation protein; PFAM: sugar fermentation stimulation protein; KEGG: tme:Tmel_0826 sugar fermentation stimulation protein YP_003163347.1 PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: cbe:Cbei_4404 heat shock protein DnaJ domain protein YP_003163348.1 KEGG: lsp:Bsph_3602 hypothetical protein YP_003163349.1 KEGG: cbk:CLL_A1603 hypothetical protein YP_003163350.1 KEGG: cbe:Cbei_4400 serine/threonine protein phosphatase-like protein YP_003163351.1 KEGG: viral A-type inclusion protein YP_003163352.1 PFAM: tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: lsp:Bsph_3606 MAP/microtubule affinity- regulating kinase 4 YP_003163353.1 KEGG: lsp:Bsph_3596 molecular chaperone-like protein YP_003163354.1 TIGRFAM: efflux transporter RND family, MFP subunit; KEGG: cbf:CLI_0141 RND family marcrolide efflux protein YP_003163355.1 KEGG: ngk:NGK_0997 hypothetical protein YP_003163357.1 TIGRFAM: PTS system, mannose/fructose/sorbose family, IID subunit; PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: llc:LACR_1865 mannose-specific PTS system component IID YP_003163358.1 PFAM: phosphotransferase system PTS sorbose- specific IIC subunit; KEGG: llc:LACR_1864 mannose-specific PTS system component IIC YP_003163359.1 KEGG: efa:EF0020 PTS system, mannose-specific IIAB components; TIGRFAM: PTS system, mannose/fructose/sorbose family, IIA subunit; PFAM: PTS system sorbose subfamily IIB component; PTS system fructose subfamily IIA component YP_003163360.1 KEGG: emi:Emin_0145 hypothetical protein YP_003163361.1 PFAM: aminotransferase class V; KEGG: cpy:Cphy_2907 cysteine desulfurase NifS YP_003163362.1 KEGG: dth:DICTH_1166 Ser/Thr protein phosphatase family protein YP_003163363.1 KEGG: dth:DICTH_1165 transcriptional regulator YP_003163364.1 TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: haloacid dehalogenase type 3; haloacid dehalogenase; sucrose-6F-phosphate phosphohydrolase; KEGG: fnu:FN0391 HAD superfamily hydrolase YP_003163365.1 KEGG: fnu:FN1383 DNA polymerase III alpha subunit; TIGRFAM: DNA polymerase III subunit alpha; PFAM: DNA polymerase III subunit alpha; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein YP_003163366.1 KEGG: conserved hypothetical protein YP_003163367.1 TIGRFAM: methyltransferase; PFAM: protein of unknown function methylase KEGG: fnu:FN1329 methyltransferase YP_003163368.1 PFAM: exonuclease VII small subunit; KEGG: fnu:FN1328 exodeoxyribonuclease VII small subunit YP_003163369.1 PFAM: polyprenyl synthetase; KEGG: fnu:FN1327 dimethylallyltransferase YP_003163370.1 KEGG: Formin Homology 2 Domain containing protein YP_003163371.1 PFAM: protein of unknown function DUF152; KEGG: fnu:FN1561 cytoplasmic protein YP_003163372.1 KEGG: conserved hypothetical protein YP_003163373.1 TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: cbe:Cbei_0291 5-formyltetrahydrofolate cyclo- ligase YP_003163374.1 PFAM: cobalbumin biosynthesis protein; KEGG: cac:CAC1383 adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase YP_003163375.1 TIGRFAM: small GTP-binding protein; PFAM: elongation factor G domain IV; protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; KEGG: amt:Amet_4515 translation elongation factor G YP_003163376.1 KEGG: rxy:Rxyl_2672 hypothetical protein YP_003163377.1 KEGG: sgo:SGO_1740 integral membrane protein YP_003163378.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: cpr:CPR_2559 glycerol kinase YP_003163379.1 PFAM: chloride channel core; TrkA-C domain protein; KEGG: fnu:FN1727 chloride channel protein YP_003163380.1 PFAM: ApbE family lipoprotein; KEGG: cpf:CPF_2491 ApbE family protein YP_003163381.1 KEGG: hypothetical protein YP_003163382.1 KEGG: afl:Aflv_2013 transposase; TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB YP_003163383.1 PFAM: transposase IS200-family protein; KEGG: ctc:CTC00621 transposase YP_003163384.1 PFAM: ATP-NAD/AcoX kinase; KEGG: fnu:FN0267 ATP-NAD kinase YP_003163385.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: fnu:FN0268 DNA repair protein RecN YP_003163386.1 PFAM: integrase; integrase family protein; KEGG: lsl:LSL_0934 integrase/recombinase XerD/RipX family YP_003163387.1 KEGG: hypothetical protein YP_003163388.1 KEGG: nth:Nther_2842 protein of unknown function DUF1694 YP_003163389.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_003163390.1 KEGG: drm:Dred_2192 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase YP_003163391.1 TIGRFAM: phosphomethylpyrimidine kinase; PFAM: phosphomethylpyrimidine kinase type-1; KEGG: bay:RBAM_035260 pyridoxal kinase YP_003163392.1 KEGG: bbt:BBta_3107 hypothetical protein YP_003163393.1 KEGG: nma:NMA0696 hypothetical protein YP_003163394.1 KEGG: tde:TDE0666 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter; SMART: ATPase AAA YP_003163395.1 TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: tpp:TPASS_0612 hypothetical protein YP_003163396.1 PFAM: SufBD protein; KEGG: cbe:Cbei_1850 FeS assembly protein SufD YP_003163397.1 TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; KEGG: tde:TDE2052 aminotransferase, class V YP_003163398.1 TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: tde:TDE2053 NifU domain-containing protein YP_003163399.1 KEGG: fnu:FN0281 DNA polymerase III alpha subunit; TIGRFAM: DNA polymerase III subunit alpha; DNA polymerase III subunit epsilon; PFAM: DNA polymerase III subunit alpha; exonuclease RNase T and DNA polymerase III; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: exonuclease; phosphoesterase PHP domain protein YP_003163401.1 PFAM: formate-tetrahydrofolate ligase FTHFS; KEGG: fnu:FN2082 formate--tetrahydrofolate ligase YP_003163402.1 KEGG: cpo:COPRO5265_0471 5-nitroimidazole antibiotic resistance protein YP_003163403.1 KEGG: pnu:Pnuc_1118 SMC domain-containing protein YP_003163404.1 KEGG: pnu:Pnuc_1117 hypothetical protein YP_003163405.1 PFAM: aminotransferase class I and II; KEGG: tde:TDE1669 hemolysin YP_003163406.1 KEGG: amt:Amet_2951 hypothetical protein YP_003163407.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: amt:Amet_2951 hypothetical protein YP_003163408.1 TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF165; KEGG: tme:Tmel_0021 hypothetical protein YP_003163409.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: fnu:FN1995 hypothetical protein YP_003163410.1 TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: amt:Amet_0071 precorrin-6y C5,15- methyltransferase (decarboxylating), CbiE subunit YP_003163411.1 KEGG: apj:APJL_1764 hypothetical protein YP_003163412.1 KEGG: conserved hypothetical protein YP_003163413.1 TIGRFAM: leucyl-tRNA synthetase; KEGG: fnu:FN1517 leucyl-tRNA synthetase YP_003163414.1 PFAM: NmrA family protein; KEGG: smu:SMU.796 hypothetical protein YP_003163415.1 PFAM: regulatory protein LysR; KEGG: swo:Swol_0935 LysR-type transcriptional regulator YP_003163416.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine YP_003163417.1 PFAM: methionine synthase vitamin-B12 independent; KEGG: sgo:SGO_0747 methionine synthase YP_003163418.1 TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase; KEGG: fnu:FN0489 prolipoprotein diacylglyceryl transferase YP_003163419.1 PFAM: aminotransferase class V; KEGG: csc:Csac_1303 aminotransferase, class V YP_003163420.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_003163421.1 PFAM: nucleotidyl transferase; KEGG: tpd:Teth39_1623 mannose-1-phosphate guanylyltransferase (GDP) YP_003163422.1 KEGG: fnu:FN0903 polysialic acid capsule expression protein KpsF; TIGRFAM: KpsF/GutQ family protein; PFAM: sugar isomerase (SIS); CBS domain containing protein; SMART: CBS domain containing protein YP_003163423.1 PFAM: polysaccharide biosynthesis protein; KEGG: rca:Rcas_0772 polysaccharide biosynthesis protein YP_003163424.1 PFAM: glycosyl transferase family 2; KEGG: cdf:CD2773 beta-glycosyltransferase YP_003163425.1 KEGG: fnu:FN1920 tRNA (5-methylaminomethyl-2- thiouridylate) -methyltransferase; TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase; PFAM: tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase YP_003163426.1 PFAM: transposase IS3/IS911 family protein; Resolvase helix-turn-helix domain protein; KEGG: cpr:CPR_2608 hypothetical protein YP_003163427.1 TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: afl:Aflv_1282 predicted membrane protein, hemolysin III YP_003163428.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: fnu:FN1834 biopolymer transport ExbB protein YP_003163429.1 PFAM: biopolymertransporter ExbD/TolR; KEGG: hch:HCH_02701 biopolymer transporter YP_003163430.1 KEGG: heat shock factor (HSF)-type DNA-binding domain-containing protein YP_003163431.1 PFAM: peptidase M24; creatinase; KEGG: gtn:GTNG_2342 proline dipeptidase YP_003163432.1 KEGG: lmf:LMOf2365_0481 hypothetical protein YP_003163433.1 KEGG: bcy:Bcer98_0952 hypothetical protein YP_003163434.1 KEGG: tex:Teth514_2323 CRISPR-associated helicase Cas3 YP_003163436.1 KEGG: fnu:FN1014 dihydrofolate synthase; TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein YP_003163437.1 TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: fnu:FN1392 30S ribosomal protein S16P YP_003163438.1 KEGG: har:HEAR2509 hypothetical protein YP_003163439.1 PFAM: NLP/P60 protein; KEGG: cko:CKO_00603 outer membrane lipoprotein YP_003163440.1 PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: mem:Memar_1051 protein of unknown function DUF306, MetA and HslJ YP_003163441.1 PFAM: sodium:dicarboxylate symporter; KEGG: cdf:CD2693 sodium:dicarboxylate symporter YP_003163442.1 KEGG: cco:CCC13826_0326 septicolysin YP_003163443.1 PFAM: dehydrogenase E1 component; KEGG: spw:SPCG_1133 acetoin dehydrogenase, E1 component, subunit alpha YP_003163444.1 PFAM: transketolase; transketolase domain protein; KEGG: sgo:SGO_1132 acetoin dehydrogenase YP_003163445.1 unlike PdhC proteins from other organisms, some Mycoplasma lack an N-terminal lipoyl domain; in Mycoplasma hyopneumonia the PdhD proteins contains the lipoyl domain YP_003163446.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; glucose-inhibited division protein A; HI0933 family protein; biotin/lipoyl attachment domain-containing protein; KEGG: sgo:SGO_1130 dihydrolipoamide dehydrogenase YP_003163447.1 TIGRFAM: lipoyltransferase and lipoate-protein ligase; PFAM: biotin/lipoate A/B protein ligase; KEGG: ssa:SSA_1173 lipoate protein ligase A YP_003163448.1 PFAM: acyltransferase 3; KEGG: pph:Ppha_0673 acyltransferase 3 YP_003163449.1 PFAM: Domain of unknown function DUF1858; KEGG: amt:Amet_1445 hypothetical protein YP_003163450.1 KEGG: tde:TDE2411 glycogen phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35 YP_003163451.1 PFAM: ATPase AAA; ATPase AAA central domain protein; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: sgo:SGO_1856 ATP-dependent proteinase ATP- binding chain YP_003163452.1 PFAM: extracellular solute-binding protein family 5; KEGG: lsp:Bsph_1475 oligopeptide-binding protein OppA precursor YP_003163453.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: fma:FMG_0274 oligopeptide ABC transporter permease protein YP_003163454.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: lsp:Bsph_1473 oligopeptide transporter permease protein YP_003163455.1 PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; KEGG: ssv:SSU98_1870 ABC-type oligopeptide transporter, ATPase component YP_003163456.1 KEGG: lsp:Bsph_1471 oligopeptide transport ATP- binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA YP_003163457.1 KEGG: hypothetical protein YP_003163458.1 KEGG: pmu:PM1543 hypothetical protein YP_003163459.1 KEGG: ctc:CTC02290 nicotinate-nucleotide-- dimethylbenzimidazole phosphoribosyltransferase; TIGRFAM:nicotinate-nucleotide/dimethylbenzimidazolep hosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase YP_003163460.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway YP_003163461.1 KEGG: cco:CCC13826_2193 hypothetical protein YP_003163462.1 TIGRFAM: valyl-tRNA synthetase; KEGG: fnu:FN2011 valyl-tRNA synthetase YP_003163465.1 PFAM: protein of unknown function DUF107; KEGG: fnu:FN1548 hypothetical protein YP_003163466.1 PFAM: band 7 protein; SMART: band 7 protein; KEGG: fnu:FN1549 stomatin like protein YP_003163467.1 KEGG: cpf:CPF_0565 1-phosphofructokinase; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein YP_003163468.1 TIGRFAM: PTS system, fructose subfamily, IIC subunit; PTS system, fructose subfamily, IIsubunit alpha; PTS system, fructose-specific, IIB subunnit; PFAM: phosphotransferase system PTS fructose- specific IIsubunit beta; phosphotransferase system EIIC; phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: smu:SMU.872 PTS system, fructose- specific enzyme IIABC component YP_003163469.1 PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: bga:BG0212 surface-located membrane protein 1 YP_003163470.1 KEGG: afl:Aflv_2013 transposase; TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB YP_003163471.1 PFAM: transposase IS200-family protein; KEGG: ctc:CTC00621 transposase YP_003163472.1 TIGRFAM: outer membrane insertion C-terminal signal; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cff:CFF8240_1760 TonB-dependent heme receptor YP_003163473.1 PFAM: nitroreductase; KEGG: cac:CAC0718 nitroreductase YP_003163474.1 KEGG: apj:APJL_1216 hypothetical protein YP_003163476.1 PFAM: Autotransporter beta- domain protein; KEGG: fnu:FN1554 hypothetical protein YP_003163477.1 KEGG: amt:Amet_1624 hypothetical protein YP_003163478.1 PFAM: metallophosphoesterase; KEGG: bca:BCE_2172 serine/threonine phosphatase YP_003163479.1 TIGRFAM: GTP-binding protein TypA; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; KEGG: fnu:FN0634 GTP-binding protein TypA/BipA YP_003163480.1 KEGG: gsu:GSU2727 hypothetical protein YP_003163481.1 KEGG: cbk:CLL_A2357 lipoprotein YP_003163482.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: lmo:lmo1116 hypothetical protein YP_003163483.1 PFAM: protein of unknown function DUF534; KEGG: ckl:CKL_0621 extracellular substrate-binding protein YP_003163484.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: dth:DICTH_0132 transcriptional regulator YP_003163485.1 KEGG: ser:SERP1795 galactose-6-phosphate isomerase subunit LacA; TIGRFAM: galactose-6-phosphate isomerase, Lacsubunit alpha; sugar-phosphate isomerase, RpiB/LacA/LacB family; PFAM: ribose/galactose isomerase YP_003163486.1 catalyzes the interconversion of galactose 6-phosphate to tagatose 6-phosphate YP_003163487.1 KEGG: sgo:SGO_1517 tagatose-6-phosphate kinase; TIGRFAM: tagatose-6-phosphate kinase; 1- phosphofructokinase; PFAM: PfkB domain protein YP_003163488.1 KEGG: llc:LACR_D03 tagatose 1,6-diphosphate aldolase; TIGRFAM: tagatose 1,6-diphosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2- dehydro-3-deoxyheptonate aldolase YP_003163489.1 TIGRFAM: PTS system, lactose-specific IIa component; PFAM: phosphotransferase system PTS lactose/cellobiose-specific IIsubunit alpha; KEGG: smu:SMU.1492 PTS system, lactose-specific enzyme IIA EIIA-LAC) YP_003163490.1 KEGG: spv:SPH_1305 PTS system, lactose-specific IIC component; TIGRFAM: PTS system, lactose-specific IIC subunit; PTS system, lactose/cellobiose family IIsubunit beta; PTS system, lactose/cellobiose family IIC subunit; PFAM: phosphotransferase system EIIC; phosphotransferase system lactose/cellobiose-specific IIsubunit beta YP_003163491.1 catalyzes the formation of 6-phospho-galactose from a 6-phospho-beta-galactoside YP_003163492.1 TIGRFAM: copper transport repressor, CopY/TcrY family; PFAM: Penicillinase repressor; KEGG: lci:LCK_p400008 TcrY YP_003163493.1 TIGRFAM: ATPase P; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: aoe:Clos_1066 heavy metal translocating P- type ATPase YP_003163494.1 TIGRFAM: prevent-host-death family protein; KEGG: lsl:LSL_1389 hypothetical protein YP_003163495.1 TIGRFAM: death-on-curing family protein; PFAM: filamentation induced by cAMP protein Fic; KEGG: lsl:LSL_1388 death on curing protein YP_003163496.1 KEGG: aoe:Clos_2073 magnesium transporter; TIGRFAM: magnesium transporter; PFAM: MgtE integral membrane region; MgtE intracellular region; CBS domain containing protein; SMART: CBS domain containing protein YP_003163497.1 KEGG: ctc:CTC01350 Mg2+ transporter MgtE; TIGRFAM: magnesium transporter; PFAM: MgtE integral membrane region; MgtE intracellular region; CBS domain containing protein; SMART: CBS domain containing protein YP_003163499.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cbh:CLC_2024 acetyltransferase YP_003163500.1 PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: sgo:SGO_0565 alcohol dehydrogenase YP_003163502.1 PFAM: conserved hypothetical protein; KEGG: cdf:CD3400 hypothetical protein YP_003163503.1 KEGG: fnu:FN1090 excinuclease ABC subunit C; TIGRFAM: excinuclease ABC, C subunit; PFAM: excinuclease ABC C subunit domain protein; excinuclease ABC C subunit domain protein; SMART: excinuclease ABC C subunit domain protein YP_003163504.1 KEGG: GAF domain containing protein YP_003163505.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: nth:Nther_0421 ABC transporter YP_003163506.1 PFAM: inner-membrane translocator; KEGG: tpd:Teth39_1831 inner-membrane translocator YP_003163507.1 PFAM: inner-membrane translocator; KEGG: cno:NT01CX_1410 ABC transporter permease YP_003163508.1 PFAM: methyltransferase type 11; KEGG: fnu:FN1919 methyltransferase YP_003163509.1 KEGG: btl:BALH_2750 hypothetical protein YP_003163510.1 TIGRFAM: excinuclease ABC subunit A; PFAM: ABC transporter related; KEGG: fnu:FN1103 excinuclease ABC subunit A YP_003163511.1 KEGG: smt:Smal_1004 hypothetical protein YP_003163512.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: tme:Tmel_0074 cation diffusion facilitator family transporter YP_003163513.1 PFAM: conserved hypothetical protein; KEGG: lfe:LAF_0704 hypothetical protein YP_003163514.1 TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: mes:Meso_3426 50S ribosomal protein L32 YP_003163515.1 KEGG: cpe:CPE0138 hypothetical protein YP_003163516.1 KEGG: tpd:Teth39_1290 3-oxoacyl-(acyl carrier protein) synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier- protein (ACP)] synthase III YP_003163517.1 KEGG: ton:TON_0310 hypothetical membrane-bound dolichyl-phosphate-mannose-protein mannosyltransferase YP_003163518.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase; KEGG: fnu:FN0149 malonyl-CoA-[acyl-carrier-protein] transacylase YP_003163519.1 KEGG: pca:Pcar_2144 pilus-related protein YP_003163520.1 PFAM: peptidase A24A prepilin type IV; KEGG: fnu:FN2092 integral membrane protein YP_003163521.1 KEGG: cbl:CLK_2114 glycosyl transferase, group 2 family protein YP_003163522.1 KEGG: hypothetical protein YP_003163523.1 KEGG: conserved hypothetical protein YP_003163524.1 KEGG: Viral A-type inclusion protein repeat YP_003163526.1 PFAM: type II and III secretion system protein; KEGG: fnu:FN2086 general secretion pathway protein D YP_003163527.1 TIGRFAM: rfaE bifunctional protein; PFAM: PfkB domain protein; KEGG: fnu:FN1786 ADP-heptose synthase YP_003163528.1 PFAM: ROK family protein; KEGG: gka:GK3204 fructokinase YP_003163529.1 PFAM: type II secretion system protein; KEGG: cbh:CLC_1852 type II secretion system protein F YP_003163530.1 PFAM: O-methyltransferase family 3; KEGG: fnu:FN0314 caffeoyl-CoA O-methyltransferase YP_003163531.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: dol:Dole_2329 endonuclease/exonuclease/phosphatase YP_003163532.1 KEGG: cac:CAC2390 N-acetyl-gamma-glutamyl-phosphate reductase; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: semialdehyde dehydrogenase NAD - binding; semialdehyde dehydrogenase dimerisation region YP_003163533.1 KEGG: cno:NT01CX_2378 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein; TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; PFAM: arginine biosynthesis protein ArgJ YP_003163534.1 KEGG: mae:Maeo_0127 acetylglutamate kinase; TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase YP_003163535.1 TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: cac:CAC2388 acetylornithine aminotransferase YP_003163536.1 KEGG: sun:SUN_0739 hypothetical protein YP_003163537.1 TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: aha:AHA_4091 ornithine carbamoyltransferase YP_003163538.1 PFAM: protein of unknown function DUF187; KEGG: bay:RBAM_018400 YngK YP_003163539.1 TIGRFAM: ATP synthase F0 subunit alpha; PFAM: H+transporting two-sector ATPase subunit alpha; KEGG: fnu:FN0364 ATP synthase A chain, sodium ion specific YP_003163540.1 TIGRFAM: ATP synthase F0 C subunit; PFAM: H+transporting two-sector ATPase C subunit; KEGG: aoe:Clos_2565 F0F1 ATP synthase subunit C YP_003163541.1 KEGG: GE12732 gene product from transcript GE12732- RA YP_003163542.1 TIGRFAM: ATP synthase F0 subunit beta; PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: fnu:FN0362 ATP synthase B chain, sodium ion specific YP_003163543.1 TIGRFAM: ATP synthase F1 subunit delta; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; KEGG: fnu:FN0361 ATP synthase delta chain, sodium ion specific YP_003163544.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_003163545.1 KEGG: fnu:FN0359 ATP synthase gamma chain, sodium ion specific; TIGRFAM: ATP synthase F1 subunit gamma; PFAM: H+transporting two-sector ATPase subunit gamma YP_003163546.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_003163547.1 TIGRFAM: ATP synthase F1 subunit epsilon; PFAM: H+transporting two-sector ATPase delta/subunit epsilon; KEGG: amt:Amet_0354 ATP synthase F1 subunit epsilon YP_003163548.1 KEGG: syp:SYNPCC7002_A0168 hypothetical protein YP_003163549.1 PFAM: transglycosylase; KEGG: aoe:Clos_0560 transglycosylase YP_003163550.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ssv:SSU98_1648 lactoylglutathione lyase and related lyases YP_003163551.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_003163552.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: nme:NMB1280 very long chain acyl-CoA dehydrogenase-related protein YP_003163553.1 TIGRFAM: sodium/glutamate symporter; PFAM: sodium/glutamate symporter; KEGG: amt:Amet_0767 sodium/glutamate symporter YP_003163554.1 PFAM: HI0933 family protein; FAD dependent oxidoreductase; KEGG: aoe:Clos_1839 hypothetical protein YP_003163555.1 KEGG: cbl:CLK_2872 oxidoreductase, FAD-binding YP_003163557.1 TIGRFAM: YidE/YbjL duplication; PFAM: YidE/YbjL duplication domain protein; KEGG: lac:LBA1696 aspartate alanine antiporter YP_003163558.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_003163561.1 KEGG: nth:Nther_2633 protein of unknown function UPF0236 YP_003163562.1 KEGG: nmr:Nmar_0571 hypothetical protein YP_003163563.1 KEGG: lbr:LVIS_1494 transposase YP_003163564.1 PFAM: protein of unknown function DUF45; KEGG: mmp:MMP0838 hypothetical protein YP_003163565.1 PFAM: polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; NUDIX hydrolase; KEGG: fnu:FN0243 poly(A) polymerase YP_003163566.1 PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: fnu:FN0313 16S rRNA m(5)C 967 methyltransferase YP_003163567.1 KEGG: cac:CAC0425 sucrase-6-phosphate hydrolase (gene SacA); TIGRFAM: sucrose-6-phosphate hydrolase; PFAM: glycosyl hydrolase family 32 domain protein; SMART: glycoside hydrolase family 32 YP_003163568.1 TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: drm:Dred_3222 YbaK/EbsC protein YP_003163569.1 KEGG: hypothetical protein YP_003163570.1 PFAM: Autotransporter beta- domain protein; KEGG: fnu:FN0254 hypothetical protein YP_003163571.1 KEGG: hypothetical protein YP_003163572.1 KEGG: aoe:Clos_2741 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase YP_003163573.1 PFAM: patatin; surface antigen variable number repeat protein; KEGG: bfs:BF3599 hypothetical protein YP_003163574.1 TIGRFAM: endoribonuclease L-PSP; PFAM: endoribonuclease L-PSP; KEGG: cju:C8J_1306 hypothetical protein YP_003163575.1 PFAM: phospholipase D/transphosphatidylase; SMART: phospholipase D/transphosphatidylase; KEGG: dol:Dole_2328 phospholipase D/transphosphatidylase YP_003163576.1 TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; KEGG: fnu:FN0635 tRNA pseudouridine synthase B YP_003163577.1 KEGG: conserved hypothetical protein YP_003163578.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity YP_003163579.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: fnu:FN0809 23S rRNA methyltransferase YP_003163580.1 KEGG: nph:NP2924A thymidylate synthase; TIGRFAM: thymidylate synthase; PFAM: thymidylate synthase YP_003163581.1 PFAM: dihydrofolate reductase region; KEGG: cbk:CLL_A3449 dihydrofolate reductase YP_003163582.1 PFAM: regulatory protein TetR; KEGG: fnu:FN1004 TetR family transcriptional regulator YP_003163583.1 PFAM: protein of unknown function DUF374; KEGG: fnu:FN1269 lipoprotein YP_003163584.1 TIGRFAM: methionyl-tRNA synthetase; PFAM: tRNA synthetase class I (M); t-RNA-binding domain protein; Cysteinyl-tRNA synthetase class Ia; KEGG: fnu:FN1268 methionyl-tRNA synthetase YP_003163585.1 PFAM: hypotheticalprotein; Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; hypothetical protein; KEGG: cdf:CD2123 multiprotein-complex assembly protein YP_003163586.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: ctc:CTC00146 thiol:disulfide interchange protein TlpA YP_003163587.1 TIGRFAM: ribosomal protein S15; PFAM: ribosomal protein S15; KEGG: fnu:FN1979 30S ribosomal protein S15P YP_003163588.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: fnu:FN1016 lipid A biosynthesis lauroyl acyltransferase YP_003163590.1 KEGG: fnu:FN1913 HD superfamily hydrolase; TIGRFAM: YmdA/YtgF protein; metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KH type 1 domain protein; metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; KH domain protein YP_003163591.1 PFAM: metallophosphoesterase; KEGG: fnu:FN1609 hypothetical protein YP_003163592.1 TIGRFAM: ribosomal protein L11 methyltransferase; PFAM: ribosomal L11 methyltransferase; methyltransferase type 11; methyltransferase small; methyltransferase type 12; KEGG: cbl:CLK_2342 ribosomal protein L11 methyltransferase YP_003163593.1 KEGG: fnu:FN1607 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region YP_003163594.1 PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: fnu:FN1024 DNA-binding protein HU YP_003163595.1 PFAM: 3-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: fnu:FN1606 3-deoxy-D-manno-octulosonic-acid transferase YP_003163596.1 KEGG: fnu:FN1606 3-deoxy-D-manno-octulosonic-acid transferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: methyltransferase YP_003163597.1 PFAM: methyltransferase type 12; KEGG: nmn:NMCC_1180 hypothetical protein YP_003163598.1 PFAM: MscS Mechanosensitive ion channel; KEGG: fjo:Fjoh_1674 MscS mechanosensitive ion channel YP_003163599.1 PFAM: beta-lactamase; KEGG: fnu:FN1162 hydroxyacylglutathione hydrolase YP_003163600.1 TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: tme:Tmel_1315 D-tyrosyl-tRNA(Tyr) deacylase YP_003163601.1 PFAM: NLP/P60 protein; KEGG: ypb:YPTS_1401 NLP/P60 protein YP_003163602.1 KEGG: ckl:CKL_3207 hypothetical protein; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: semialdehyde dehydrogenase dimerisation region; semialdehyde dehydrogenase NAD - binding YP_003163603.1 KEGG: lcb:LCABL_30400 amino acid ABC transporter amino acid-binding protein/permease; TIGRFAM: polar amino acid ABC transporter inner membrane protein; PFAM: extracellular solute-binding protein family 3; binding-protein-dependent transporters inner membrane component; SMART: extracellular solute-binding protein family 3 YP_003163604.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: aoe:Clos_0724 ABC transporter YP_003163605.1 KEGG: fnu:FN1560 hypothetical protein YP_003163606.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: spe:Spro_3358 endonuclease/exonuclease/phosphatase YP_003163607.1 KEGG: fnu:FN1292 hypothetical protein YP_003163608.1 KEGG: chu:CHU_1120 membrane protein YP_003163609.1 PFAM: SH3 type 3 domain protein; KEGG: fnu:FN0665 N-acetylmuramoyl-L-alanine amidase YP_003163610.1 KEGG: ton:TON_1608 deoxyribose-phosphate aldolase; TIGRFAM: deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2- dehydro-3-deoxyheptonate aldolase YP_003163611.1 PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: ssu:SSU05_0395 transcriptional regulator YP_003163612.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: lmo:lmo0432 hypothetical protein YP_003163613.1 KEGG: drm:Dred_2662 Mg2+ transporter protein, CorA family protein YP_003163614.1 PFAM: band 7 protein; KEGG: ssa:SSA_0617 membrane protease subunit YP_003163615.1 enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity YP_003163617.1 KEGG: cbt:CLH_1568 cytoplasmic protein YP_003163618.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_003163619.1 KEGG: smt:Smal_0680 hypothetical protein YP_003163620.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase; KEGG: pmo:Pmob_0976 HAD family hydrolase YP_003163621.1 PFAM: iron-containing alcohol dehydrogenase; 3- dehydroquinate synthase; KEGG: cno:NT01CX_0287 glycerol dehydrogenase YP_003163622.1 KEGG: fnu:FN1941 ClpB protein; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA; ATPase AAA central domain protein; Torsin; ATPase AAA; Clp domain protein; SMART: ATPase AAA YP_003163623.1 KEGG: bfr:BF1970 hypothetical protein YP_003163626.1 KEGG: crp:CRP_070 tyrosyl-tRNA synthetase YP_003163627.1 TIGRFAM: phosphopentomutase; PFAM: phosphopentomutase domain protein; metalloenzyme domain protein; KEGG: cdf:CD1223 phosphopentomutase YP_003163630.1 PFAM: NUDIX hydrolase; KEGG: cdf:CD0452 DNA repair protein YP_003163631.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: fph:Fphi_1384 sigma54 modulation protein YP_003163632.1 TIGRFAM: DNA-3-methyladenine glycosylase; PFAM: methylpurine-DNA glycosylase (MPG); KEGG: ssp:SSP0561 3-methylpurine glycosylase YP_003163633.1 KEGG: hypothetical protein similar to mature parasite-infected erythrocyte surface antigen or PfEMP2 YP_003163634.1 PFAM: aminodeoxychorismate lyase; KEGG: fnu:FN1976 4-amino-4-deoxychorismate lyase YP_003163635.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: fnu:FN1977 cell cycle protein MesJ YP_003163636.1 KEGG: fnu:FN1978 cell division protein FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: ATPase AAA; peptidase M41; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA YP_003163638.1 KEGG: SLEI family protein YP_003163639.1 PFAM: protein of unknown function DUF1311; KEGG: fnu:FN0389 hypothetical protein YP_003163640.1 KEGG: chu:CHU_1120 membrane protein YP_003163644.1 PFAM: protein of unknown function DUF1311; KEGG: fnu:FN0389 hypothetical protein YP_003163645.1 PFAM: protein of unknown function DUF1311; KEGG: fnu:FN0389 hypothetical protein YP_003163646.1 PFAM: ankyrin; SMART: ankyrin; KEGG: ankyrin repeat protein YP_003163647.1 KEGG: fnu:FN1793 phosphoenolpyruvate-protein phosphotransferase; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein domain protein; PEP-utilising protein mobile region YP_003163648.1 TIGRFAM: DJ-1 family protein; PFAM: ThiJ/PfpI domain protein; KEGG: cpy:Cphy_0371 DJ-1 family protein YP_003163649.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: fnu:FN1711 methyltransferase YP_003163651.1 KEGG: ctc:CTC00993 V-type sodium ATP synthase subunit G YP_003163652.1 PFAM: V-type ATPase 116 kDa subunit; KEGG: ctc:CTC00994 V-type ATP synthase subunit I YP_003163653.1 PFAM: H+transporting two-sector ATPase C subunit; KEGG: cbb:CLD_1936 V-type ATPase, K subunit YP_003163654.1 PFAM: H+transporting two-sector ATPase E subunit; KEGG: cbf:CLI_2693 V-type ATPase, E subunit YP_003163655.1 PFAM: H+transporting two-sector ATPase C (AC39) subunit; KEGG: cbt:CLH_2591 ATP synthase (C/AC39) subunit YP_003163656.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the F subunit is part of the catalytic core of the ATP synthase complex YP_003163657.1 PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein; KEGG: cbf:CLI_2690 V-type ATP synthase subunit A YP_003163658.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the subunit beta is part of the catalytic core of the ATP synthase complex YP_003163659.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex YP_003163660.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_003163661.1 KEGG: cts:Ctha_0439 hypotheticalprotein YP_003163662.1 KEGG: amt:Amet_1624 hypothetical protein YP_003163663.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cac:CAC0847 cation efflux pump (multidrug resistance protein) YP_003163664.1 PFAM: endonuclease/exonuclease/phosphatase; SMART: deoxyribonuclease I-like; KEGG: fnu:FN0891 DNAse I homologous protein DHP2 precursor YP_003163665.1 TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; KEGG: mja:MJ1581 aspartate carbamoyltransferase catalytic subunit YP_003163666.1 TIGRFAM: aspartate carbamoyltransferase, regulatory subunit; PFAM: aspartate transcarbamylase regulatory subunit; KEGG: pgn:PGN_1603 aspartate carbamoyltransferase regulatory subunit YP_003163668.1 KEGG: cdf:CD3592 orotidine 5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase YP_003163669.1 KEGG: fjo:Fjoh_0553 dihydroorotase; TIGRFAM: dihydroorotase; PFAM: amidohydrolase YP_003163670.1 KEGG: lwe:lwe1850 orotate phosphoribosyltransferase; TIGRFAM: orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_003163671.1 TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: haloacid dehalogenase type 3; haloacid dehalogenase; sucrose-6F-phosphate phosphohydrolase; KEGG: spv:SPH_1032 Cof family protein YP_003163672.1 KEGG: hypothetical protein YP_003163673.1 PFAM: oxidoreductase domain protein; semialdehyde dehydrogenase NAD - binding; oxidoreductase domain; KEGG: ssv:SSU98_0225 dehydrogenase and related proteins YP_003163674.1 PFAM: metallophosphoesterase; KEGG: fnu:FN1603 2',3'-cyclic nucleotide 3'- phosphodiesterase YP_003163675.1 PFAM: NLP/P60 protein; KEGG: cdf:CD2402 cell wall hydrolase YP_003163676.1 TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: har:HEAR0231 peptidase S8 YP_003163677.1 KEGG: hypothetical malaria antigen YP_003163678.1 PFAM: restriction modification system DNA specificity domain; KEGG: pla:Plav_2349 hypothetical protein YP_003163679.1 PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; KEGG: cdf:CD0784 N-acetylmuramoyl-L- alanine amidase YP_003163680.1 KEGG: hypothetical protein YP_003163681.1 PFAM: heat shock protein 70; KEGG: cac:CAC0472 HSP70/DnaK family protein YP_003163682.1 KEGG: cac:CAC0471 GrpE protein HSP-70 cofactor YP_003163683.1 KEGG: hypothetical protein YP_003163684.1 KEGG: taf:THA_314 CRISPR-associated RAMP protein YP_003163685.1 PFAM: saccharopine dehydrogenase; KEGG: cpy:Cphy_3052 saccharopine dehydrogenase YP_003163686.1 PFAM: basic membrane lipoprotein; KEGG: dth:DICTH_1024 basic membrane protein family protein YP_003163687.1 KEGG: dth:DICTH_1361 pyrimidine-nucleoside phosphorylase; TIGRFAM: pyrimidine-nucleoside phosphorylase; PFAM: Pyrimidine nucleoside phosphorylase domain; glycosyl transferase family 3; glycosyl transferase, family 3-like YP_003163688.1 KEGG: bay:RBAM_006610 YdjI YP_003163689.1 PFAM: PspA/IM30 family protein; KEGG: bsu:BSU06180 phage shock protein A-like protein YP_003163690.1 KEGG: hypothetical protein, conserved YP_003163691.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_003163692.1 TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: amt:Amet_2196 CRISPR-associated Cas2 family protein YP_003163693.1 TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: fnu:FN1177 hypothetical protein YP_003163694.1 TIGRFAM: CRISPR-associated protein Cas4; PFAM: protein of unknown function DUF83; KEGG: amt:Amet_2194 CRISPR-associated Cas4 family protein YP_003163695.1 KEGG: amt:Amet_2193 metal dependent phosphohydrolase; TIGRFAM: CRISPR-associated helicase Cas3; CRISPR- associated HD domain protein; PFAM: DEAD/DEAH box helicase; SMART: DEAD-like helicases YP_003163696.1 TIGRFAM: CRISPR-associated protein Cas5; PFAM: protein of unknown function DUF522; KEGG: amt:Amet_2192 CRISPR-associated Cas5 family protein YP_003163697.1 TIGRFAM: CRISPR-associated regulatory protein, DevR family; CRISPR-associated autoregulator DevR family; KEGG: amt:Amet_2191 CRISPR-associated autoregulator DevR family protein protein YP_003163698.1 KEGG: amt:Amet_2190 CRISPR-associated Cst1 family protein YP_003163699.1 TIGRFAM: CRISPR-associated protein Cas6; PFAM: protein of unknown function DUF57; KEGG: ctc:CTC01142 hypothetical protein YP_003163700.1 TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; HAD-superfamily hydrolase, subfamily IB (PSPase- like); PFAM: haloacid dehalogenase; KEGG: aoe:Clos_2105 HAD family hydrolase YP_003163701.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: fnu:FN0965 D-3-phosphoglycerate dehydrogenase YP_003163702.1 KEGG: cbt:CLH_2271 hiran domain family YP_003163703.1 KEGG: lsp:Bsph_3604 hypothetical protein YP_003163704.1 KEGG: fnu:FN0705 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; SMART: 5'-3' exonuclease; DNA-directed DNA polymerase; Helix-hairpin-helix domain protein class 2 YP_003163705.1 PFAM: AzlC family protein; KEGG: cbt:CLH_2216 AzlC family protein YP_003163706.1 PFAM: branched-chain amino acid transport; KEGG: cbt:CLH_2217 branched-chain amino acid transport YP_003163707.1 KEGG: fnu:FN0099 inorganic pyrophosphatase YP_003163708.1 KEGG: taf:THA_434 hypothetical protein YP_003163709.1 TIGRFAM: polar amino acid ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: cco:CCC13826_0415 His/Glu/Gln/Arg/opine amino acid ABC transporter permease YP_003163710.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: chy:CHY_0506 glutamine ABC transporter ATP- binding protein YP_003163711.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: cco:CCC13826_0411 UDP-3-O-[3- hydroxymyristoyl] N-acetylglucosamine deacetylase YP_003163712.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: cco:CCC13826_0411 UDP-3-O-[3- hydroxymyristoyl] N-acetylglucosamine deacetylase YP_003163713.1 PFAM: OmpA/MotB domain protein; KEGG: fnu:FN2059 outer membrane protein YP_003163714.1 TIGRFAM: sporulation integral membrane protein YtvI; PFAM: protein of unknown function UPF0118; KEGG: cth:Cthe_1013 hypothetical protein YP_003163715.1 KEGG: fnu:FN0825 cytoplasmic protein YP_003163716.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: cth:Cthe_1762 RND family efflux transporter MFP subunit YP_003163717.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: fps:FP0584 ABC transporter ATPase YP_003163718.1 PFAM: protein of unknown function DUF214; KEGG: fnu:FN0828 ABC transporter permease YP_003163719.1 TIGRFAM: carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: cbe:Cbei_4408 carboxynorspermidine decarboxylase YP_003163720.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cbe:Cbei_3089 ABC transporter YP_003163721.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_003163722.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_003163723.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: ccv:CCV52592_1685 N- (5'phosphoribosyl)anthranilate isomerase YP_003163724.1 PFAM: indole-3-glycerol phosphate synthase; KEGG: tpd:Teth39_0891 indole-3-glycerol-phosphate synthase YP_003163728.1 KEGG: cbf:CLI_A0019 hypothetical protein YP_003163729.1 KEGG: fma:FMG_0379 hypothetical protein YP_003163730.1 TIGRFAM: anthranilate phosphoribosyltransferase; glutamine amidotransferase; PFAM: glycosyl transferase family 3; glutamine amidotransferase class-I; glycosyl transferase, family 3- like; KEGG: cco:CCC13826_0969 anthranilate synthase/para- aminobenzoate synthase glutamine amidotransferase subunit YP_003163731.1 PFAM: chorismate binding-like; KEGG: cco:CCC13826_1602 anthranilate synthase component 1 (anthranilate synthasecomponent I) YP_003163732.1 KEGG: bat:BAS5063 PTS system, cellobiose-specific IIC component; TIGRFAM: PTS system, cellobiose-specific IIC subunit; PTS system, lactose/cellobiose family IIC subunit; PFAM: phosphotransferase system EIIC YP_003163733.1 PFAM: phosphotransferase system lactose/cellobiose- specific IIsubunit beta; KEGG: bcy:Bcer98_3754 phosphotransferase system lactose/cellobiose-specific IIsubunit beta YP_003163734.1 PFAM: initiator RepB protein; KEGG: fnu:FN0633 replication protein YP_003163735.1 PFAM: phosphotransferase system PTS lactose/cellobiose-specific IIsubunit alpha; KEGG: tte:TTE0336 phosphotransferase system cellobiose-specific component IIA YP_003163736.1 PFAM: oxidoreductase domain protein; KEGG: ppe:PEPE_0095 predicted dehydrogenase related protein YP_003163737.1 KEGG: ppe:PEPE_0097 acetyltransferase (isoleucine patch superfamily) YP_003163738.1 TIGRFAM: ATPase P; ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: pmo:Pmob_0433 heavy metal translocating P- type ATPase YP_003163739.1 PFAM: protein of unknown function DUF891; KEGG: ccv:CCV52592_2041 hypothetical protein YP_003163740.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: mta:Moth_0364 XRE family transcriptional regulator YP_003163742.1 PFAM: transketolase; transketolase domain protein; KEGG: cac:CA_P0106 1-deoxy-D-xylulose-5-phosphate synthase YP_003163744.1 PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; KEGG: aae:aq_1812 homoserine dehydrogenase YP_003163745.1 KEGG: chy:CHY_1909 aspartate kinase; TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein YP_003163746.1 KEGG: hypothetical protein YP_003163747.1 PFAM: chaperonin Cpn10; KEGG: tpd:Teth39_1722 chaperonin Cpn10 YP_003163748.1 TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: fnu:FN0675 60 kDa chaperonin GroEL YP_003163749.1 TIGRFAM: hydroxymethylglutaryl-CoA reductase, degradative; KEGG: smu:SMU.942 hydroxymethylglutaryl- CoA reductase YP_003163750.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: cbe:Cbei_3719 maltose O-acetyltransferase YP_003163751.1 KEGG: sgo:SGO_0244 hydroxymethylglutaryl-CoA synthase; TIGRFAM: hydroxymethylglutaryl-CoA synthase; PFAM: hydroxymethylglutaryl-coenzyme A synthase domain; hydroxymethylglutaryl-coenzyme A synthase domain protein YP_003163752.1 KEGG: GH24749 gene product from transcript GH24749- RA YP_003163753.1 PFAM: Rod shape-determining protein MreC; KEGG: fnu:FN1496 rod shape-determining protein MreC YP_003163754.1 KEGG: fnu:FN1493 hypothetical protein YP_003163755.1 TIGRFAM: DNA repair protein RecO; KEGG: fnu:FN1492 DNA repair protein RecO YP_003163756.1 TIGRFAM: PTS system, fructose subfamily, IIA subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: fnu:FN1491 PTS system, IIA component YP_003163757.1 PFAM: ATP-cone domain protein; KEGG: pmo:Pmob_0157 transcriptional regulator NrdR YP_003163758.1 PFAM: septum formation initiator; KEGG: cbf:CLI_3750 cell division protein FtsL YP_003163760.1 PFAM: protein of unknown function DUF214; KEGG: fnu:FN0581 lipoprotein releasing system transmembrane protein LolE YP_003163761.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: fnu:FN0582 lipoprotein releasing system ATP- binding protein LolD YP_003163762.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: fnu:FN1199 DNA polymerase IV YP_003163763.1 TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase zinc-binding; KEGG: cytidine deaminase family protein; K01489 cytidine deaminase YP_003163764.1 PFAM: SH3 type 3 domain protein; protein of unknown function DUF1058; SMART: SH3 domain protein; KEGG: fnu:FN0665 N-acetylmuramoyl-L-alanine amidase YP_003163765.1 PFAM: SH3 type 3 domain protein; protein of unknown function DUF1058; SMART: SH3 domain protein; KEGG: bce:BC0740 cell wall endopeptidase YP_003163766.1 PFAM: SH3 type 3 domain protein; protein of unknown function DUF1058; SMART: SH3 domain protein; KEGG: fnu:FN0665 N-acetylmuramoyl-L-alanine amidase YP_003163767.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: fnu:FN1301 ABC transporter ATP-binding protein YP_003163768.1 TIGRFAM: histidinol phosphate phosphatase HisJ family; PFAM: PHP domain protein; KEGG: cpf:CPF_1229 histidinol phosphate phosphatase family protein YP_003163770.1 PFAM: NUDIX hydrolase; KEGG: fnu:FN0747 phosphohydrolase (MutT/NUDIX family protein) YP_003163772.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis YP_003163773.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_003163774.1 KEGG: fnu:FN0412 recombination protein RecR; TIGRFAM: recombination protein RecR; PFAM: TOPRIM domain protein; Zinc finger C4-type, RecR; SMART: Toprim sub domain protein YP_003163775.1 KEGG: ctc:CTC02358 threonine synthase; TIGRFAM: threonine synthase; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta YP_003163776.1 KEGG: amr:AM1_5250 TPR domain-containing protein YP_003163777.1 KEGG: poy:PAM047 hypothetical protein YP_003163778.1 KEGG: fnu:FN1785 hypothetical protein YP_003163779.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: dsy:DSY1280 hypothetical protein YP_003163780.1 PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: fnu:FN1024 DNA-binding protein HU YP_003163781.1 PFAM: protein of unknown function DUF534; KEGG: ckl:CKL_0621 extracellular substrate-binding protein YP_003163782.1 PFAM: protein of unknown function DUF534; KEGG: krh:KRH_09560 ABC transporter substrate-binding protein YP_003163783.1 PFAM: inner-membrane translocator; KEGG: cbl:CLK_0598 ABC transporter permease YP_003163784.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: fnu:FN2079 ABC transporter ATP-binding protein YP_003163785.1 PFAM: Autotransporter beta- domain protein; KEGG: fnu:FN0254 hypothetical protein YP_003163786.1 KEGG: fnu:FN1654 hypothetical protein YP_003163787.1 KEGG: msy:MS53_0502 hypothetical protein YP_003163788.1 KEGG: hypothetical protein YP_003163789.1 SMART: hypothetical protein; Sel1 domain protein repeat-containing protein; KEGG: cts:Ctha_0439 TPR repeat-containing protein YP_003163790.1 KEGG: hypothetical protein YP_003163791.1 KEGG: cbe:Cbei_4394 hypothetical protein YP_003163792.1 PFAM: tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: lsp:Bsph_3606 MAP/microtubule affinity- regulating kinase 4 YP_003163793.1 KEGG: cbk:CLL_A1605 tetratricopeptide repeat domain protein YP_003163794.1 KEGG: lsp:Bsph_3597 hypothetical protein YP_003163795.1 PFAM: MORN variant repeat protein; KEGG: chu:CHU_2455 glucosyltransferase-S YP_003163797.1 KEGG: tme:Tmel_0364 glycosyl transferase, group 1 YP_003163798.1 KEGG: mmq:MmarC5_0616 type I site-specific deoxyribonuclease, HsdR family YP_003163800.1 KEGG: kin5; hypothetical protein YP_003163802.1 SMART: Hedgehog/intein hint domain protein; KEGG: cth:Cthe_2863 hypothetical protein YP_003163803.1 KEGG: DNA-directed RNA polymerase subunit omega family protein YP_003163804.1 PFAM: MORN variant repeat protein; KEGG: chu:CHU_1410 hypothetical protein YP_003163805.1 KEGG: cbe:Cbei_4394 hypothetical protein YP_003163806.1 KEGG: cbe:Cbei_4399 hypothetical protein YP_003163807.1 KEGG: cbk:CLL_A1606 normocyte binding protein 2B YP_003163809.1 KEGG: hypothetical protein YP_003163810.1 SMART: protein phosphatase 2C domain protein; KEGG: cbe:Cbei_4400 serine/threonine protein phosphatase-like protein YP_003163811.1 KEGG: lbr:LVIS_1494 transposase YP_003163812.1 KEGG: cbk:CLL_A1603 hypothetical protein YP_003163813.1 SMART: Sel1 domain protein repeat-containing protein; KEGG: cts:Ctha_0439 hypotheticalprotein YP_003163814.1 KEGG: conserved hypothetical protein YP_003163815.1 KEGG: hypothetical protein YP_003163816.1 KEGG: conserved hypothetical protein YP_003163817.1 KEGG: cbk:CLL_A0301 rhs element Vgr protein YP_003163818.1 KEGG: Viral A-type inclusion protein repeat YP_003163820.1 PFAM: hypothetical protein; TPR repeat-containing protein; Tetratricopeptide TPR_3; Sel1 domain protein repeat-containing protein; SMART: hypothetical protein; Sel1 domain protein repeat-containing protein; KEGG: cts:Ctha_0439 TPR repeat-containing protein YP_003163823.1 PFAM: hypotheticalprotein; Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; hypothetical protein; KEGG: cts:Ctha_0439 TPR repeat-containing protein YP_003163825.1 SMART: Sel1 domain protein repeat-containing protein; hypothetical protein; KEGG: cts:Ctha_0439 TPR repeat-containing protein YP_003163828.1 PFAM: hypotheticalprotein; Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; hypothetical protein; KEGG: cts:Ctha_0439 TPR repeat-containing protein YP_003163829.1 KEGG: hypothetical protein YP_003163830.1 KEGG: cbe:Cbei_4394 hypothetical protein YP_003163831.1 KEGG: lsp:Bsph_3602 hypothetical protein YP_003163832.1 PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: cbk:CLL_A1601 chaperone protein DnaJ YP_003163834.1 KEGG: hypothetical protein YP_003163835.1 KEGG: pspC; prespore-specific protein YP_003163836.1 KEGG: cbk:CLL_A1609 hypothetical protein YP_003163837.1 KEGG: lsp:Bsph_3595 hypothetical protein YP_003163838.1 PFAM: protein of unknown function DUF1703; KEGG: fnu:FN1654 hypothetical protein YP_003163839.1 PFAM: helicase; N-6 DNA methylase; SMART: helicase; DEAD-like helicases; KEGG: cdf:CD0423 helicase YP_003163840.1 KEGG: cpe:PCP47 type I topoisomease; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein; SMART: DNA topoisomerase I DNA-binding; Toprim sub domain protein; DNA topoisomerase I ATP-binding YP_003163841.1 KEGG: conserved hypothetical protein YP_003163842.1 PFAM: NLP/P60 protein; KEGG: cdf:CD2402 cell wall hydrolase YP_003163843.1 PFAM: lytic transglycosylase catalytic; KEGG: chy:CHY_1532 transglycosylase YP_003163844.1 KEGG: pmj:P9211_15361 hypothetical protein YP_003163845.1 KEGG: CG32662 YP_003163846.1 KEGG: conserved hypothetical protein YP_003163847.1 KEGG: sat:SYN_01872 type IV secretory protease YP_003163848.1 KEGG: bbt:BBta_7446 conjugal transfer protein TrbL YP_003163849.1 KEGG: cms:CMS_2451 prophage protein YP_003163850.1 KEGG: spa:M6_Spy1340 unknown phage protein YP_003163853.1 KEGG: spa:M6_Spy1340 unknown phage protein YP_003163855.1 KEGG: paa:Paes_1714 P-type conjugative transfer protein TrbL YP_003163858.1 KEGG: cak:Caul_5372 CagE TrbE VirB component of type IV transporter system YP_003163859.1 KEGG: hypothetical protein YP_003163861.1 PFAM: type II secretion system protein E; KEGG: paa:Paes_2346 P-type conjugative transfer ATPase TrbB YP_003163862.1 KEGG: spa:M6_Spy1173 LPXTG anchored adhesin YP_003163863.1 PFAM: TRAG family protein; KEGG: pna:Pnap_2530 TraG family protein YP_003163864.1 PFAM: conjugation TrbI family protein; KEGG: cak:Caul_5367 conjugation TrbI family protein YP_003163865.1 PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: cak:Caul_5215 P-type conjugative transfer protein TrbG YP_003163866.1 KEGG: cak:Caul_5216 conjugal transfer protein YP_003163869.1 KEGG: Viral A-type inclusion protein repeat YP_003163870.1 PFAM: MobA/MobL protein; KEGG: ppd:Ppro_3827 MobA/MobL protein YP_003163871.1 KEGG: conserved hypothetical protein YP_003163872.1 KEGG: hypothetical protein ; K09493 T-complex protein 1 subunit alpha YP_003163874.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: nth:Nther_2564 filamentation induced by cAMP protein Fic YP_003163878.1 TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; PhoU family protein; KEGG: sgo:SGO_0548 Na/Pi-cotransporter family protein YP_003163879.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: pdi:BDI_1057 dehydrogenase YP_003163881.1 TIGRFAM: purine nucleoside phosphorylase; PFAM: purine or other phosphorylase family 1; KEGG: cpf:CPF_1652 purine nucleoside phosphorylase YP_003163883.1 KEGG: cpf:CPF_2403 aminoacyl-histidine dipeptidase; TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: peptidase dimerisation domain protein; peptidase M20 YP_003163884.1 KEGG: cac:CAC2987 primase-like protein; TIGRFAM: primase/topoisomerase like protein; PFAM: TOPRIM domain protein; SMART: Toprim sub domain protein YP_003163885.1 KEGG: Viral A-type inclusion protein repeat YP_003163886.1 KEGG: mhu:Mhun_1501 FHA domain-containing protein YP_003163887.1 PFAM: radical SAM protein; KEGG: bld:BLi04172 hypothetical protein YP_003163888.1 PFAM: ATPase AAA; Torsin; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: pfl:PFL_4161 ATP-dependent Clp protease regulatory subunit YP_003163889.1 SMART: protein phosphatase 2C domain protein; KEGG: efa:EF3121 protein phosphatase 2C YP_003163890.1 PFAM: tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: protein kinase domain containing protein YP_003163891.1 PFAM: ribosomal protein S9; KEGG: fnu:FN0330 30S ribosomal protein S9P YP_003163892.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_003163893.1 KEGG: cac:CAC1497 hypothetical protein YP_003163894.1 PFAM: PRD domain protein; phosphoenolpyruvate- dependent sugar phosphotransferase system EIIA 2; Helix- turn-helix type 11 domain protein; KEGG: cbl:CLK_1607 PRD domain-containing protein YP_003163895.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: cbe:Cbei_0525 PTS IIA-like nitrogen- regulatory protein PtsN YP_003163896.1 PFAM: phosphotransferase system lactose/cellobiose- specific IIsubunit beta; KEGG: ent:Ent638_2845 phosphotransferase system, lactose/cellobiose-specific IIsubunit beta YP_003163897.1 PFAM: sugar-specific permease SgaT/UlaA; KEGG: cko:CKO_00491 ascorbate-specific PTS system enzyme IIC YP_003163898.1 PFAM: transketolase; KEGG: cko:CKO_00492 hypothetical protein YP_003163899.1 PFAM: transketolase; transketolase central region; KEGG: cko:CKO_00493 hypothetical protein YP_003163900.1 PFAM: protein of unknown function DUF421; KEGG: sgo:SGO_0379 hypothetical protein YP_003163901.1 KEGG: efa:EF0702 hypothetical protein YP_003163902.1 PFAM: peptidase U32; KEGG: fnu:FN1931 protease YP_003163903.1 KEGG: fma:FMG_0457 hypothetical protein YP_003163904.1 KEGG: fnu:FN0282 hypothetical protein YP_003163905.1 PFAM: PTS system fructose subfamily IIA component; KEGG: fnu:FN1842 dihydroxyacetone kinase phosphotransfer protein YP_003163906.1 TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: fnu:FN0284 16S rRNA processing protein RimM YP_003163907.1 KEGG: cdf:CD1256 tRNA (guanine-n(1)-)- methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase YP_003163908.1 PFAM: peptidase M48 Ste24p; KEGG: lmf:LMOf2365_0331 M48 family peptidase YP_003163909.1 KEGG: ssa:SSA_1645 hypothetical protein YP_003163910.1 PFAM: hypothetical protein; KEGG: mba:Mbar_A3063 hypothetical protein YP_003163911.1 PFAM: hypothetical protein; KEGG: cbe:Cbei_4810 abortive infection protein YP_003163912.1 KEGG: pau:PA14_32930 hypothetical protein YP_003163913.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_003163914.1 KEGG: mja:MJ0132 type I restriction-modification enzyme 2, M subunit YP_003163915.1 PFAM: restriction modification system DNA specificity domain; KEGG: bca:BCE_0839 type I restriction-modification system, M subunit YP_003163916.1 KEGG: hypothetical protein YP_003163917.1 PFAM: heat shock protein 70; KEGG: cac:CAC0472 HSP70/DnaK family protein YP_003163918.1 KEGG: cac:CAC0471 GrpE protein HSP-70 cofactor YP_003163919.1 KEGG: chu:CHU_1120 membrane protein YP_003163920.1 PFAM: peptidase M48 Ste24p; peptidase M56 BlaR1; KEGG: lmf:LMOf2365_0331 M48 family peptidase YP_003163921.1 KEGG: pen:PSEEN3028 subtilisin-like serine protease YP_003163923.1 TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; KEGG: fnu:FN0254 hypothetical protein YP_003163925.1 KEGG: chromosome associated protein, ; K06669 structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6) YP_003163926.1 KEGG: hypothetical protein YP_003163927.1 KEGG: hypothetical protein YP_003163928.1 TIGRFAM: glucokinase, ROK family; PFAM: ROK family protein; KEGG: fnu:FN1164 glucokinase YP_003163929.1 PFAM: propeptide PepSY amd peptidase M4; KEGG: mac:MA0533 hypothetical protein YP_003163930.1 KEGG: mma:MM_1695 hypothetical protein YP_003163931.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: bce:BC3201 two component system histidine kinase YP_003163932.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: btl:BALH_2874 two-component response regulator YP_003163933.1 PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: ssu:SSU05_0395 transcriptional regulator YP_003163934.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_003163935.1 KEGG: pml:ATP_00291 ABC-type spermidine/putrescine transporter, permease I YP_003163936.1 KEGG: cno:NT01CX_0707 homoserine kinase; TIGRFAM: homoserine kinase; PFAM: GHMP kinase YP_003163939.1 PFAM: protein of unknown function DUF1232; KEGG: paa:Paes_2278 protein of unknown function DUF1232 YP_003163940.1 PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: ctc:CTC01622 RNA binding protein YP_003163942.1 TIGRFAM: oligoendopeptidase F; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; oligopeptidase F; KEGG: fnu:FN0887 oligoendopeptidase F YP_003163943.1 TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: tde:TDE0506 DNA-damage-inducible protein J YP_003163944.1 KEGG: hch:HCH_03591 outer membrane protein and related peptidoglycan-associated (LipO)protein YP_003163945.1 KEGG: hdu:HD0923 hypothetical protein YP_003163946.1 KEGG: protein kinase YP_003163947.1 PFAM: phospholipase D/transphosphatidylase; SMART: phospholipase D/transphosphatidylase; KEGG: tpd:Teth39_0031 phospholipase D/transphosphatidylase YP_003163948.1 PFAM: protein of unknown function DUF676 hydrolase domain protein; KEGG: fnu:FN0484 lipase YP_003163949.1 TIGRFAM: transcriptional activator, Baf family; PFAM: Bvg accessory factor; KEGG: fnu:FN0761 Bvg accessory factor YP_003163950.1 TIGRFAM: oligopeptide transporters, OPT superfamily; PFAM: oligopeptide transporter OPT superfamily protein; KEGG: cno:NT01CX_0744 OPT family oligopeptide transporter YP_003163951.1 PFAM: ferric-uptake regulator; KEGG: tma:TM0122 ferric uptake regulation protein YP_003163952.1 PFAM: periplasmic solute binding protein; KEGG: ccv:CCV52592_0094 periplasmic solute binding protein YP_003163953.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bfs:BF0091 metal uptake system ABC transporter ATP-binding protein YP_003163954.1 PFAM: ABC transporter; KEGG: pdi:BDI_3148 zinc ABC transporter permease YP_003163955.1 KEGG: abu:Abu_0110 hypothetical protein YP_003163956.1 PFAM: protein of unknown function DUF1232; KEGG: cte:CT2220 hypothetical protein YP_003163957.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pto:PTO1057 molybdenum cofactor biosynthesis protein A YP_003163958.1 KEGG: fma:FMG_1501 albumin-binding protein homolog-1 YP_003163960.1 KEGG: cbb:CLD_2403 hypothetical protein YP_003163961.1 PFAM: protein of unknown function DUF324; KEGG: cbb:CLD_2404 CRISPR-associated RAMP protein YP_003163962.1 KEGG: CG32662 YP_003163963.1 PFAM: protein of unknown function DUF324; KEGG: cth:Cthe_2051 CRISPR-associated Csm3 family protein YP_003163964.1 PFAM: protein of unknown function DUF324; KEGG: ana:all1474 hypothetical protein YP_003163965.1 KEGG: hsm:HSM_1182 nucleic acid-binding protein YP_003163966.1 KEGG: rca:Rcas_3289 hypothetical protein YP_003163967.1 KEGG: mvn:Mevan_0113 hypothetical protein YP_003163968.1 PFAM: protein of unknown function DUF328; KEGG: fnu:FN1762 hypothetical protein YP_003163969.1 KEGG: fjo:Fjoh_3009 hypothetical protein YP_003163970.1 KEGG: fjo:Fjoh_3009 hypothetical protein YP_003163972.1 KEGG: abu:Abu_0110 hypothetical protein YP_003163973.1 PFAM: protein of unknown function UPF0236; KEGG: tte:TTE2708 hypothetical protein YP_003163974.1 KEGG: mma:MM_0557 hypothetical protein YP_003163975.1 TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: mma:MM_0558 hypothetical protein YP_003163976.1 TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: mma:MM_0559 hypothetical protein YP_003163977.1 KEGG: ste:STER_1869 hypothetical protein YP_003163978.1 KEGG: conserved hypothetical protein YP_003163979.1 TIGRFAM: CRISPR-associated protein DxTHG motif; KEGG: rhoptry protein YP_003163980.1 KEGG: tex:Teth514_1839 hypothetical protein YP_003163983.1 PFAM: GTP-binding protein HSR1-related; KEGG: nma:NMA0131 hypothetical protein YP_003163984.1 KEGG: cno:NT01CX_1077 anaerobic ribonucleoside- triphosphate reductase activating protein YP_003163985.1 KEGG: npu:Npun_F2305 hypothetical protein YP_003163987.1 TIGRFAM: CRISPR-associated protein DxTHG motif; KEGG: mja:MJ1674 hypothetical protein YP_003163990.1 KEGG: nth:Nther_2633 protein of unknown function UPF0236 YP_003163991.1 PFAM: ribonucleotide reductase; KEGG: bcy:Bcer98_1076 ribonucleotide-diphosphate reductase subunit beta YP_003163992.1 KEGG: mpe:MYPE1550 cytoskeletal protein YP_003163993.1 KEGG: bar:GBAA1371 ribonucleotide-diphosphate reductase subunit alpha; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit; PFAM: ribonucleotide reductase large subunit; ribonucleotide reductase domain protein; ribonucleotide reductase large subunit domain protein YP_003163994.1 TIGRFAM: NrdI protein; PFAM: NrdI family protein; KEGG: bcy:Bcer98_1073 ribonucleotide reductase stimulatory protein YP_003163995.1 KEGG: bsu:BSU20030 hypothetical protein YP_003163996.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_003163997.1 KEGG: aoe:Clos_1403 hypotheticalprotein YP_003163998.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: fnu:FN1068 smf protein YP_003163999.1 KEGG: fnu:FN1069 DNA topoisomerase I; TIGRFAM: DNA topoisomerase I; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein; DNA topoisomerase type IA zn finger domain protein; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain protein YP_003164000.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: lic:LIC11599 integrase/recombinase protein YP_003164001.1 PFAM: GTP-binding protein HSR1-related; KEGG: fnu:FN1072 GTP-binding protein YP_003164003.1 PFAM: beta-lactamase; KEGG: fnu:FN0900 metal dependent hydrolase YP_003164004.1 KEGG: fno:Fnod_0147 phage SPO1 DNA polymerase- related protein YP_003164005.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_003164006.1 KEGG: cbe:Cbei_4382 hypothetical protein YP_003164007.1 KEGG: lsp:Bsph_3593 hypothetical protein YP_003164008.1 PFAM: ion transport 2 domain protein ; ion transport protein; KEGG: ljo:LJ1098 hypothetical protein YP_003164009.1 PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; KEGG: cau:Caur_3584 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_003164010.1 TIGRFAM: uridine kinase; PFAM: phosphoribulokinase/uridine kinase; KEGG: ctc:CTC01064 uridine kinase YP_003164011.1 KEGG: cbk:CLL_A1606 normocyte binding protein 2B YP_003164012.1 KEGG: lsp:Bsph_3597 hypothetical protein YP_003164013.1 KEGG: cbe:Cbei_4406 hypothetical protein YP_003164015.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: fnu:FN0211 plasmid addiction system poison protein YP_003164016.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ssu:SSU05_0855 short-chain alcohol dehydrogenase of unknown specificity YP_003164017.1 TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21; KEGG: fnu:FN1117 50S ribosomal protein L21P YP_003164018.1 PFAM: protein of unknown function DUF464; KEGG: amt:Amet_2304 hypothetical protein YP_003164019.1 involved in the peptidyltransferase reaction during translation YP_003164020.1 PFAM: formate/nitrite transporter; KEGG: cpe:CPE1442 nitrite transporter YP_003164021.1 TIGRFAM: sulfite reductase, subunit A; KEGG: cbh:CLC_1013 anaerobic sulfite reductase, subunit A YP_003164022.1 TIGRFAM: sulfite reductase, subunit B; PFAM: oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: cbl:CLK_0396 anaerobic sulfite reductase, subunit B YP_003164023.1 TIGRFAM: sulfite reductase, subunit C; PFAM: nitrite and sulphite reductase 4Fe-4S region; 4Fe-4S ferredoxin iron-sulfur binding domain protein; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: cdf:CD2231 anaerobic sulfite reductase subunit C YP_003164024.1 KEGG: hypothetical protein YP_003164025.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: tme:Tmel_0141 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_003164026.1 KEGG: dsy:DSY3902 hypothetical protein YP_003164027.1 PFAM: MORN variant repeat protein; KEGG: fnu:FN2119 hypothetical protein YP_003164028.1 KEGG: mmo:MMOB1610 hypothetical protein YP_003164029.1 KEGG: Insect antifreeze protein YP_003164030.1 KEGG: psb:Psyr_1265 hypothetical protein YP_003164031.1 KEGG: cpy:Cphy_3499 polysaccharide biosynthesis protein YP_003164032.1 PFAM: N-acetylmuramoyl-L-alanine amidase family 2; peptidoglycan-binding protein; SMART: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: fnu:FN0164 anhydro-N-acetylmuramyl-tripeptide amidase YP_003164033.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_003164035.1 KEGG: bcy:Bcer98_0983 hypothetical protein YP_003164036.1 PFAM: protein of unknown function DUF208; KEGG: lla:L6208 hypothetical protein YP_003164037.1 KEGG: bfs:BF3419 hypothetical protein YP_003164038.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: bfs:BF3418 methyltransferase YP_003164039.1 TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; KEGG: cno:NT01CX_2300 large conductance mechanosensitive channel protein YP_003164040.1 TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; PFAM: ribose/galactose isomerase; KEGG: pin:Ping_3554 sugar-phosphate isomerases, RpiB/LacA/LacB family protein YP_003164041.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate YP_003164042.1 KEGG: cpy:Cphy_1197 peptidoglycan binding domain- containing protein YP_003164043.1 KEGG: ssp:SSP1140 tRNA methyltransferase; TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase; PFAM: tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase YP_003164044.1 PFAM: hypothetical protein; KEGG: cdf:CD3169 transporter YP_003164045.1 KEGG: lwe:lwe0908 secreted protein YP_003164046.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: ckl:CKL_0708 extracellular amino acid-binding protein YP_003164047.1 TIGRFAM: polar amino acid ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: cbb:CLD_0297 His/Glu/Gln/Arg/opine ABC transporter permease YP_003164048.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cac:CAC0112 glutamine ABC transporter ATP- binding protein YP_003164049.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: fnu:FN0660 ABC transporter ATP-binding protein YP_003164050.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: fnu:FN0659 ABC transporter permease YP_003164051.1 PFAM: NLPA lipoprotein; KEGG: fnu:FN0658 ABC transporter substrate-binding protein YP_003164052.1 PFAM: peptidase M13; peptidase M13 neprilysin; KEGG: hdu:HD0191 metallopeptidase YP_003164053.1 KEGG: fnu:FN1717 NAD-dependent DNA ligase; TIGRFAM: DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase adenylation; BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4- type; NAD-dependent DNA ligase OB-fold; SMART: NAD-dependent DNA ligase ; BRCT domain protein; DNA-binding protein YP_003164055.1 KEGG: lic:LIC12426 hypothetical protein YP_003164056.1 KEGG: ypy:YPK_1623 hypothetical protein YP_003164057.1 KEGG: bbt:BBta_3107 hypothetical protein YP_003164058.1 KEGG: bbt:BBta_3107 hypothetical protein YP_003164059.1 KEGG: chu:CHU_2753 hypothetical protein YP_003164060.1 TIGRFAM:radical SAM protein; PFAM: radical SAM domain protein; KEGG: fnu:FN0526 florfenicol resistance protein YP_003164061.1 KEGG: fnu:FN0525 penicillin-binding protein; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase YP_003164062.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: swo:Swol_0433 prevent-host-death protein YP_003164063.1 TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin Txe/YoeB; KEGG: rha:RHA1_ro08668 hypothetical protein YP_003164064.1 PFAM: xanthine/uracil/vitamin C permease; KEGG: cdf:CD2107 xanthine/uracil permease YP_003164065.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: cbt:CLH_3215 CBS/transporter domain protein YP_003164066.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ssv:SSU98_1655 histone acetyltransferase HPA2- like acetyltransferase YP_003164067.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ssv:SSU98_1655 histone acetyltransferase HPA2- like acetyltransferase YP_003164068.1 TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: cth:Cthe_0178 argininosuccinate lyase YP_003164069.1 KEGG: hypothetical protein YP_003164070.1 TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: nucleotidyl transferase; KEGG: fnu:FN1266 UTP--glucose-1-phosphate uridylyltransferase YP_003164071.1 PFAM: GTP-binding protein HSR1-related; KEGG: ppr:PBPRA0891 hypothetical protein YP_003164073.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; KEGG: ssp:SSP1708 phosphocarrier protein HPr YP_003164074.1 KEGG: ppw:PputW619_2062 hypothetical protein YP_003164075.1 PFAM: protein of unknown function UPF0153; KEGG: pna:Pnap_2747 protein of unknown function UPF0153 YP_003164076.1 KEGG: lpf:lpl2135 hypothetical protein YP_003164077.1 PFAM: protein of unknown function DUF37; KEGG: tme:Tmel_1630 hypothetical protein YP_003164078.1 PFAM: Tubulin/FtsZ GTPase; KEGG: cbe:Cbei_1118 cell division protein FtsZ YP_003164079.1 KEGG: hypothetical protein YP_003164080.1 PFAM: protein of unknown function DUF201; KEGG: smu:SMU.1321c hypothetical protein YP_003164081.1 PFAM: esterase; KEGG: sgo:SGO_1135 esterase superfamily YP_003164082.1 PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: cbe:Cbei_3300 ABC transporter related YP_003164083.1 PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: cbe:Cbei_3299 ABC transporter related YP_003164085.1 KEGG: conserved hypothetical protein YP_003164086.1 PFAM: protein of unknown function DUF218; KEGG: bce:BC1617 cytoplasmic protein YP_003164087.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_003164088.1 PFAM: exonuclease RNase T and DNA polymerase III; SMART: exonuclease; KEGG: mae:Maeo_0545 exonuclease RNase T and DNA polymerase III YP_003164089.1 PFAM: type III restriction protein res subunit; helicase domain protein; SMART: DEAD-like helicases ; helicase; KEGG: afl:Aflv_0333 N-terminal HKD family nuclease fused to DNA/RNA helicase domain YP_003164090.1 KEGG: conserved hypothetical protein YP_003164091.1 PFAM: integrase family protein; KEGG: cbo:CBO1679 phage integrase YP_003164094.1 TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; polysaccharide biosynthesis protein; multi antimicrobial extrusion protein MatE; KEGG: fnu:FN0709 virulence factor MviN YP_003164095.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: fnu:FN0708 cytoplasmic protein YP_003164096.1 TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: riboflavin kinase; FAD synthetase; cytidylyltransferase; KEGG: cdf:CD1315 riboflavin biosynthesis protein YP_003164097.1 PFAM: protein of unknown function DUF583; KEGG: tte:TTE0840 hypothetical protein YP_003164098.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF- family domain protein; KEGG: ckl:CKL_3583 sugar kinase YP_003164099.1 TIGRFAM: histidinol phosphate phosphatase HisJ family; PFAM: PHP domain protein; KEGG: pdi:BDI_1238 histidinol-phosphatase YP_003164101.1 TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; KEGG: tex:Teth514_1007 bifunctional phosphoribosyl- AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein YP_003164102.1 PFAM: protein of unknown function DUF86; KEGG: tye:THEYE_A1184 nucleotidyltransferase YP_003164103.1 PFAM: DNA polymerase beta domain protein region; KEGG: dth:DICTH_1832 nucleotidyltransferase YP_003164104.1 TIGRFAM: prevent-host-death family protein; KEGG: ccv:CCV52592_2220 prevent-host-death family protein YP_003164105.1 PFAM: plasmid stabilization system; KEGG: sak:SAK_0744 prophage LambdaSa04, RelE/ParE family protein YP_003164106.1 TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis protein; KEGG: abu:Abu_0054 imidazoleglycerol phosphate synthase, cyclase subunit YP_003164107.1 KEGG: cdf:CD1552 1-(5-phosphoribosyl)-5- [(5-phosphoribosylamino)methylidene amino] imidazole-4- carboxamide isomerase; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis protein YP_003164108.1 KEGG: lbr:LVIS_1494 transposase YP_003164109.1 KEGG: viral A-type inclusion protein YP_003164110.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_003164111.1 KEGG: swo:Swol_1756 CRISPR-associated protein, TM1811 family YP_003164112.1 KEGG: lre:Lreu_0962 hypothetical protein YP_003164113.1 PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: jan:Jann_2788 imidazoleglycerol-phosphate dehydratase YP_003164115.1 KEGG: cbe:Cbei_1330 ATP-dependent protease La; PFAM: peptidase S16; ATPase AAA; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA YP_003164116.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_003164117.1 KEGG: hypothetical protein YP_003164118.1 KEGG: dsy:DSY3285 hypothetical protein YP_003164119.1 KEGG: cbb:CLD_2985 histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase; PFAM: histidinol dehydrogenase YP_003164120.1 KEGG: ckl:CKL_1294 ATP phosphoribosyltransferase catalytic subunit; TIGRFAM: ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase catalytic region YP_003164121.1 PFAM: tRNA synthetase class II (G H P and S); KEGG: cdf:CD1547 ATP phosphoribosyltransferase regulatory subunit YP_003164122.1 KEGG: fnu:FN0641 methyltransferase YP_003164123.1 PFAM: NUDIX hydrolase; KEGG: llm:llmg_1335 hypothetical protein YP_003164124.1 KEGG: lhe:lhv_1204 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS YP_003164125.1 TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: lsa:LSA1099 folylpolyglutamate synthase YP_003164128.1 KEGG: xac:XAC1817 hypothetical protein YP_003164129.1 KEGG: lla:L0175 GTP cyclohydrolase I; TIGRFAM: GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I YP_003164130.1 KEGG: bcy:Bcer98_0069 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM:2-amino-4-hydroxy-6-hydroxymethyldihydropter idinepyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin- pyrophosphokinase HPPK YP_003164131.1 TIGRFAM: dihydroneopterin aldolase; PFAM: dihydroneopterin aldolase; KEGG: llc:LACR_1274 dihydroneopterin aldolase YP_003164133.1 KEGG: abu:Abu_0950 hypothetical protein YP_003164134.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: cdf:CD2479 hypothetical protein YP_003164135.1 PFAM: dihydrouridine synthase; KEGG: lbf:LBF_2465 tRNA-dihydrouridine synthase YP_003164136.1 PFAM: peptidase M48 Ste24p; KEGG: ppd:Ppro_3278 peptidase M48, Ste24p YP_003164137.1 PFAM: peptidase M48 Ste24p; KEGG: ppd:Ppro_3569 peptidase M48, Ste24p YP_003164138.1 KEGG: LOC763726; similar to laccase 1 YP_003164139.1 PFAM: Domain of unknown function DUF1858; KEGG: fnu:FN1309 hypothetical protein YP_003164140.1 KEGG: fnu:FN0833 hypothetical protein YP_003164141.1 PFAM: manganese and iron superoxide dismutase; KEGG: afl:Aflv_0876 superoxide dismutase YP_003164142.1 PFAM: transcriptional regulator; response regulator receiver; KEGG: gsu:GSU0451 DNA-binding response regulator YP_003164143.1 PFAM: cobyrinic acid ac-diamide synthase; KEGG: mja:MJ0283 nucleotide-binding protein YP_003164144.1 KEGG: fnu:FN1716 hypothetical protein YP_003164145.1 KEGG: cth:Cthe_1845 homoserine O- succinyltransferase; TIGRFAM: homoserine O-succinyltransferase; PFAM: homoserine O-succinyltransferase YP_003164147.1 KEGG: fnu:FN0536 DNA polymerase III beta chain; TIGRFAM: DNA polymerase III subunit beta; PFAM: DNA polymerase III beta chain; SMART: DNA polymerase III beta chain YP_003164148.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; KEGG: fno:Fnod_0431 RpoD family RNA polymerase sigma factor YP_003164149.1 PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; ketopantoate reductase; KEGG: gtn:GTNG_2153 NAD(P)H-dependent glycerol-3- phosphate dehydrogenase YP_003164150.1 PFAM: protein of unknown function DUF205; KEGG: fnu:FN0537 hypothetical protein YP_003164151.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: amt:Amet_1111 MATE efflux family protein YP_003164152.1 KEGG: fnu:FN0597 lipid-A-disaccharide synthase; TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19 YP_003164153.1 PFAM: protein of unknown function DUF1009; KEGG: fnu:FN0596 hypothetical protein YP_003164154.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis YP_003164155.1 TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: ote:Oter_2576 beta-hydroxyacyl-(acyl-carrier- protein) dehydratase FabZ YP_003164156.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_003164158.1 PFAM: hypothetical protein; regulatory protein DeoR; SMART: regulatory protein DeoR; KEGG: cbe:Cbei_3345 helix-turn-helix, type 11 domain protein YP_003164159.1 PFAM: transcription activator effector binding; KEGG: cbt:CLH_3132 AraC family transcriptional regulator YP_003164161.1 TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase class Ic; KEGG: fnu:FN1340 glutamyl-tRNA synthetase YP_003164162.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: mpe:MYPE6420 NADPH oxidoreductase YP_003164163.1 KEGG: ctc:CTC00602 hypothetical protein YP_003164164.1 KEGG: linker histone H1 and H5 family protein YP_003164165.1 KEGG: cju:C8J_0706 hypothetical protein YP_003164166.1 PFAM: nitroreductase; KEGG: sha:SH0546 NAD(P)H-flavin oxidoreductase YP_003164167.1 PFAM: nitroreductase; KEGG: cbe:Cbei_0346 nitroreductase YP_003164168.1 KEGG: cbk:CLL_A1591 hypothetical protein YP_003164169.1 KEGG: btl:BALH_3877 endonuclease IV; TIGRFAM: apurinic endonuclease Apn1; PFAM: xylose isomerase; SMART: AP endonuclease family 2 YP_003164170.1 PFAM: TfoX domain protein; KEGG: tde:TDE0549 TfoX domain-containing protein YP_003164171.1 KEGG: cbk:CLL_A2815 hypothetical protein YP_003164172.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: fnu:FN0875 23S rRNA methyltransferase YP_003164173.1 KEGG: chu:CHU_1120 membrane protein YP_003164174.1 KEGG: chu:CHU_1120 membrane protein YP_003164175.1 KEGG: fnu:FN1289 hypothetical protein YP_003164176.1 PFAM: histidine triad (HIT) protein; KEGG: fnu:FN1873 bis(5'-nucleosyl)-tetraphosphatase YP_003164177.1 KEGG: taf:THA_1568 ribose 5-phosphate isomerase B; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: ribose/galactose isomerase YP_003164178.1 PFAM: thioesterase superfamily protein; KEGG: fps:FP1207 hypothetical protein YP_003164179.1 KEGG: sul:SYO3AOP1_1168 hypothetical protein YP_003164180.1 PFAM: PP-loop domain protein; KEGG: cbo:CBO0341 PP-loop family protein YP_003164181.1 KEGG: fnu:FN0286 hypothetical protein YP_003164183.1 KEGG: tpd:Teth39_1670 addiction module antitoxin YP_003164184.1 KEGG: fnu:FN0287 dimethyladenosine transferase; TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; SMART: ribosomal RNA adenine methylase transferase YP_003164185.1 KEGG: spe:Spro_3998 hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_003164186.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_003164187.1 TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: fnu:FN0326 50S ribosomal protein L35P YP_003164188.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits YP_003164189.1 KEGG: spw:SPCG_1982 IS630-Spn1, transposase Orf1 YP_003164190.1 KEGG: fnu:FN2014 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: ATPase AAA; peptidase S16 lon domain protein; ATPase associated with various cellular activities AAA_5; SMART: peptidase S16; ATPase AAA YP_003164191.1 binds and unfolds substrates as part of the ClpXP protease YP_003164192.1 KEGG: nis:NIS_0165 ATP-dependent Clp protease proteolytic subunit; TIGRFAM: ATP-dependent Clp protease proteolytic subunit ClpP; PFAM: peptidase S14 ClpP YP_003164193.1 TIGRFAM: trigger factor; PFAM: trigger factor domain protein; trigger factor domain; peptidylprolyl isomerase FKBP-type; KEGG: fnu:FN2017 trigger factor, PPIase YP_003164194.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: fnu:FN2018 single-stranded-DNA-specific exonuclease RecJ YP_003164195.1 TIGRFAM: ribosome-binding factor A; PFAM: ribosome-binding factor A; KEGG: fnu:FN2019 ribosome-binding factor A YP_003164196.1 TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; translation initiation factor IF-2 domain protein; GTP-binding protein HSR1-related; KEGG: fnu:FN2020 translation initiation factor IF-2 YP_003164197.1 PFAM: protein of unknown function DUF448; KEGG: fnu:FN2021 ABC1 family protein YP_003164198.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_003164199.1 PFAM: protein of unknown function DUF150; KEGG: fnu:FN2023 cytoplasmic protein YP_003164200.1 PFAM: Chromate transporter; KEGG: bfs:BF3156 chromate transporter YP_003164201.1 PFAM: Chromate transporter; KEGG: cno:NT01CX_0483 chromate transporter YP_003164202.1 PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: aas:Aasi_0854 hypothetical protein YP_003164203.1 PFAM: hypothetical protein; TPR repeat-containing protein; Tetratricopeptide TPR_3; SMART: Tetratricopeptide domain protein; KEGG: cac:CAC0416 hypotheticalprotein YP_003164204.1 PFAM: PP-loop domain protein; KEGG: fnu:FN0868 PP family ATPase YP_003164205.1 KEGG: bha:BH0872 alpha,alpha-phosphotrehalase; TIGRFAM: alpha,alpha-phosphotrehalase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_003164206.1 PFAM: molybdopterin binding domain; KEGG: cbh:CLC_0267 competence damage-inducible protein A YP_003164207.1 PFAM: Tubulin/FtsZ GTPase; KEGG: fnu:FN1451 cell division protein FtsZ YP_003164209.1 KEGG: RapGAP/RanGAP domain-containing protein YP_003164210.1 KEGG: hypothetical protein YP_003164214.1 KEGG: ana:all3462 unknown protein YP_003164215.1 KEGG: hypothetical protein YP_003164216.1 PFAM: TraX family protein; KEGG: cbb:CLD_2798 TraX family protein YP_003164217.1 KEGG: ana:all3462 unknown protein YP_003164218.1 KEGG: ana:all3462 unknown protein YP_003164219.1 KEGG: hypothetical protein YP_003164220.1 KEGG: bhr:BH0810 virulence factor MviN YP_003164224.1 KEGG: hypothetical protein YP_003164225.1 KEGG: esi:Exig_0270 hypothetical protein YP_003164227.1 PFAM: hypothetical protein; KEGG: cpr:CPR_0234 CAAX amino terminal protease family protein YP_003164228.1 PFAM: propeptide PepSY amd peptidase M4; KEGG: mma:MM_1695 hypothetical protein YP_003164229.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: btl:BALH_2875 sensor histidine kinase YP_003164230.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bwe:BcerKBAB4_2944 two component transcriptional regulator YP_003164232.1 KEGG: cbh:CLC_2701 hypothetical protein YP_003164234.1 catalyzes the removal of amino acids from the N termini of peptides YP_003164235.1 KEGG: gbm:Gbem_4054 dihydrodipicolinate synthase; TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase YP_003164236.1 KEGG: amt:Amet_2793 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase YP_003164237.1 KEGG: esi:Exig_0485 aspartate kinase; TIGRFAM: aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein YP_003164238.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: cbf:CLI_3509 diaminopimelate decarboxilase YP_003164239.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: tde:TDE2710 MATE efflux family protein YP_003164240.1 KEGG: fnu:FN0872 hypothetical protein YP_003164241.1 KEGG: afl:Aflv_2013 transposase; TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB YP_003164242.1 PFAM: VWA containing CoxE family protein; KEGG: ecm:EcSMS35_3514 VWA domain protein YP_003164243.1 KEGG: amr:AM1_4013 hypothetical protein YP_003164244.1 PFAM: ATPase associated with various cellular activities AAA_5; ATPase AAA; KEGG: bth:BT_3908 hypothetical protein YP_003164245.1 KEGG: conserved hypothetical protein YP_003164246.1 PFAM: zinc finger SWIM domain protein; KEGG: bth:BT_3906 hypothetical protein YP_003164247.1 KEGG: fnu:FN2119 hypothetical protein YP_003164248.1 TIGRFAM: PTS system, glucose subfamily, IIsubunit alpha; PFAM: sugar-specific permease EIIA 1 domain; KEGG: ppr:PBPRA0861 glucose-specific PTS system component YP_003164249.1 PFAM: hypothetical protein; TPR repeat-containing protein; Sel1 domain protein repeat- containing protein; SMART: Sel1 domain protein repeat-containing protein; hypothetical protein; KEGG: cts:Ctha_0439 TPR repeat-containing protein YP_003164250.1 KEGG: fnu:FN1851 ribonuclease PH; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2 YP_003164251.1 PFAM: glycine hydroxymethyltransferase; KEGG: fno:Fnod_0085 serine hydroxymethyltransferase YP_003164252.1 PFAM: VacJ family lipoprotein; KEGG: noc:Noc_0977 VacJ-like lipoprotein YP_003164253.1 KEGG: pca:Pcar_1774 hypothetical protein YP_003164254.1 PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: fnu:FN1129 chromosome partition protein smc YP_003164255.1 TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: net:Neut_1762 sugar transferase YP_003164256.1 PFAM: protein of unknown function DUF1703; KEGG: fnu:FN1654 hypothetical protein YP_003164257.1 PFAM: acyltransferase 3; KEGG: fps:FP1263 hypothetical protein YP_003164258.1 PFAM: O-methyltransferase domain protein; KEGG: fnu:FN0388 tetracenomycin polyketide synthesis O-methyltransferase TcmP YP_003164259.1 PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: cbh:CLC_1628 ABC transporter ATP- binding/permease YP_003164260.1 PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: ctc:CTC00915 transporter YP_003164261.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: fnu:FN0328 Na(+)-linked D-alanine glycine permease YP_003164262.1 KEGG: atc:AGR_L_2917 hypothetical protein YP_003164263.1 KEGG: atc:AGR_L_2917 hypothetical protein YP_003164264.1 PFAM: redoxin; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; KEGG: ctc:CTC00797 thiol peroxidase YP_003164265.1 PFAM: Nicotinate phosphoribosyltransferase-like; KEGG: fph:Fphi_1232 nicotinate phosphoribosyltransferase YP_003164266.1 PFAM: UvrD/REP helicase; KEGG: fnu:FN0592 ATP-dependent DNA helicase PcrA YP_003164267.1 PFAM: thymidine kinase; KEGG: sah:SaurJH1_2193 thymidine kinase YP_003164268.1 PFAM: alpha amylase catalytic region; glycoside hydrolase family 13 domain protein Ig domain protein region domain protein; SMART: alpha amylase catalytic sub domain; KEGG: sru:SRU_0362 glycosy hydrolase family protein YP_003164269.1 KEGG: fnu:FN1368 ComF operon protein 3 YP_003164270.1 KEGG: fnu:FN1369 hypothetical protein YP_003164271.1 PFAM: protein of unknown function UPF0102; KEGG: vpa:VP0448 hypothetical protein YP_003164272.1 PFAM: Sel1 domain protein repeat-containing protein; SMART: hypothetical protein; Sel1 domain protein repeat-containing protein; KEGG: cts:Ctha_0439 hypotheticalprotein YP_003164276.1 PFAM: ribonuclease HII/HIII; KEGG: fnu:FN1371 ribonuclease HII YP_003164277.1 KEGG: dth:DICTH_1699 pseudouridylate synthase, 23S RNA-specific; TIGRFAM: pseudouridine synthase; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein YP_003164278.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: blj:BLD_0357 Fic family protein YP_003164279.1 KEGG: fnu:FN1229 hypothetical protein YP_003164280.1 KEGG: abu:Abu_2199 tRNA pseudouridine synthase A YP_003164281.1 KEGG: fnu:FN2115 hypothetical protein YP_003164282.1 KEGG: hypothetical protein YP_003164283.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase; KEGG: cte:CT0889 phosphoglycolate phosphatase YP_003164284.1 PFAM: protein of unknown function DUF896; KEGG: fnu:FN0041 hypothetical protein YP_003164285.1 KEGG: cpr:CPR_1953 sensor histidine kinase YP_003164286.1 PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; KEGG: cpr:CPR_0984 pyridine nucleotide-disulphide oxidoreductase YP_003164287.1 SMART: Sel1 domain protein repeat-containing protein; KEGG: cts:Ctha_0439 hypotheticalprotein YP_003164289.1 KEGG: lbr:LVIS_1494 transposase YP_003164291.1 KEGG: ana:all3780 similar to kinesin light chain YP_003164292.1 KEGG: sha:SH2553 hypothetical protein YP_003164293.1 PFAM: cobalamin synthesis protein P47K; KEGG: fnu:FN0779 G3E family GTPase YP_003164294.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: mpn:MPN564 NADP-dependent alcohol dehydrogenase YP_003164295.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: ssa:SSA_0292 AraC family transcriptional regulator YP_003164296.1 PFAM: protein of unknown function DUF1211; KEGG: llm:llmg_1684 hypothetical protein YP_003164297.1 KEGG: sun:SUN_0814 hypothetical protein YP_003164298.1 PFAM: protein of unknown function DUF1211; KEGG: smu:SMU.845 hypothetical protein YP_003164299.1 PFAM: protein of unknown function DUF1211; KEGG: smu:SMU.845 hypothetical protein YP_003164300.1 KEGG: pdi:BDI_2171 flavodoxin YP_003164301.1 PFAM: alpha/beta hydrolase fold; KEGG: gur:Gura_4372 alpha/beta fold family hydrolase-like protein YP_003164302.1 KEGG: sus:acid_2910 hypothetical protein YP_003164303.1 PFAM: carboxylesterase type B; KEGG: asu:Asuc_2093 carboxylesterase type B YP_003164304.1 KEGG: eta:ETA_23990 hypothetical protein YP_003164305.1 PFAM: regulatory protein LysR; KEGG: lac:LBA1024 transcriptional regulator YP_003164306.1 PFAM: aldo/keto reductase; KEGG: gur:Gura_4373 2,5-didehydrogluconate reductase YP_003164307.1 KEGG: gdj:Gdia_1609 hypothetical protein YP_003164308.1 KEGG: DnaJ domain containing protein YP_003164309.1 PFAM: aminotransferase class I and II; KEGG: bwe:BcerKBAB4_3837 aminotransferase A YP_003164310.1 PFAM: (uracil-5)-methyltransferase; KEGG: amt:Amet_3671 RNA methyltransferase YP_003164311.1 catalyzes the formation of citrate from acetyl-CoA and oxaloacetate YP_003164312.1 PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: aha:AHA_1152 isocitrate dehydrogenase YP_003164313.1 Catalyzes the conversion of citrate to isocitrate YP_003164314.1 PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: chu:CHU_3371 membrane-associated phospholipid phosphatase YP_003164315.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bpu:BPUM_1219 response regulator YP_003164316.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: lac:LBA1524 two-component sensor histidine kinase YP_003164317.1 PFAM: BioY protein; KEGG: rca:Rcas_0018 BioY protein YP_003164318.1 catalyzes the formation of biotin from dethiobiotin and sulfur 2 S-adenosyl-L-methionine YP_003164319.1 KEGG: cli:Clim_1673 protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein YP_003164320.1 PFAM: protein of unknown function YGGT; KEGG: cab:CAB960 inner membrane protein YP_003164321.1 TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3- phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: fnu:FN1709 CDP-diacylglycerol--glycerol-3- phosphate 3-phosphatidyltransferase YP_003164322.1 KEGG: fnu:FN1708 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; polynucleotide phosphorylase, phosphorolytic RNA- binding, bacterial/organelle-type; Exoribonuclease, phosphorolytic domain 2; KH type 1 domain protein; SMART: RNA binding S1 domain protein; KH domain protein YP_003164324.1 PFAM: substrate-binding region of ABC-type glycine betaine transporter; binding-protein-dependent transporters inner membrane component; KEGG: bwe:BcerKBAB4_2100 substrate-binding region of ABC-type glycine betaine transporter YP_003164325.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: mpe:MYPE6420 NADPH oxidoreductase YP_003164326.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bca:BCE_2313 glycine betaine/L-proline ABC transporter ATP-binding protein YP_003164327.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: sgo:SGO_0840 MarR family transcriptional regulator YP_003164328.1 PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: smu:SMU.1098c oxidoreductase YP_003164329.1 TIGRFAM: methionine synthase; PFAM: homocysteine S-methyltransferase; methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; dihydropteroate synthase DHPS; Vitamin B12 dependent methionine synthase activation region; KEGG: bce:BC4250 5-methyltetrahydrofolate-- homocysteine methyltransferase YP_003164330.1 KEGG: mst:Msp_0261 hypothetical protein YP_003164332.1 KEGG: sgo:SGO_0825 lipoprotein YP_003164333.1 KEGG: hypothetical protein YP_003164334.1 KEGG: cyt:cce_2077 hypothetical protein YP_003164335.1 PFAM: protein of unknown function DUF1003; KEGG: cbb:CLD_0468 hypothetical protein YP_003164336.1 PFAM: OmpA/MotB domain protein; KEGG: fnu:FN0253 outer membrane protein YP_003164337.1 KEGG: fnu:FN0252 hypothetical protein YP_003164338.1 KEGG: fnu:FN0251 hypothetical protein YP_003164339.1 KEGG: fnu:FN0250 hypothetical protein YP_003164340.1 KEGG: fnu:FN0249 hypothetical protein YP_003164341.1 TIGRFAM: PTS system, fructose subfamily, IIA subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: gka:GK1838 PTS system, fructose-specific enzyme II, BC component YP_003164342.1 KEGG: fnu:FN1917 tRNA delta(2)- isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase YP_003164343.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_003164344.1 PFAM: nuclease (SNase domain protein); SMART: nuclease (SNase domain protein); KEGG: dvl:Dvul_2575 nuclease YP_003164345.1 PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein; KEGG: cbl:CLK_0142 cystathionine beta-lyase YP_003164346.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cbt:CLH_2550 acetyltransferase, GNAT family YP_003164347.1 TIGRFAM: uracil-DNA glycosylase; PFAM: uracil-DNA glycosylase superfamily; KEGG: cdf:CD2481 uracil-DNA glycosylase YP_003164348.1 PFAM: cobalt transporter; KEGG: cpf:CPF_1834 cobalt ABC transporter permease YP_003164349.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cpr:CPR_1555 ABC transporter YP_003164350.1 PFAM: protein of unknown function DUF1393; KEGG: ljo:LJ1703 hypothetical protein YP_003164351.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: fnu:FN1902 deoxycytidylate deaminase YP_003164352.1 KEGG: fnu:FN1066 exodeoxyribonuclease VII large subunit; TIGRFAM: exodeoxyribonuclease VII large subunit; PFAM: exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type YP_003164353.1 PFAM: methyltransferase type 11; KEGG: sgo:SGO_1488 methyltransferase YP_003164354.1 PFAM: protein of unknown function DUF1703; KEGG: fnu:FN1654 hypothetical protein YP_003164355.1 PFAM: AraC protein arabinose-binding/dimerisation; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: spw:SPCG_1873 msm operon regulatory protein YP_003164356.1 KEGG: bcl:ABC3765 sucrose-6-phosphate hydrolase; TIGRFAM: sucrose-6-phosphate hydrolase; PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system EIIC; glycosyl hydrolase family 32; phosphotransferase system PTS EIIB protein; SMART: glycoside hydrolase family 32 YP_003164357.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: amt:Amet_0894 ABC transporter YP_003164358.1 PFAM: glycoside hydrolase clan GH-D; KEGG: bha:BH2223 alpha-galactosidase YP_003164359.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: cpr:CPR_0478 ABC transporter permease YP_003164360.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: cpr:CPR_0477 ABC transporter permease YP_003164361.1 PFAM: extracellular solute-binding protein family 1; KEGG: cpr:CPR_0476 ABC transporter substrate- binding protein YP_003164362.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bcl:ABC0733 AraC/XylS family transcriptional regulator YP_003164363.1 catalyzes the formation of alpha-D-glucose 1-phosphate and UDP-galactose from UDP-glucose and alpha-D-galactose 1-phosphate in galactose metabolism YP_003164364.1 catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism YP_003164365.1 PFAM: protein of unknown function DUF1385; KEGG: fnu:FN1092 hypothetical protein YP_003164366.1 non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair YP_003164367.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_003164368.1 KEGG: cpf:CPF_1982 pantetheine-phosphate adenylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase YP_003164369.1 KEGG: aoe:Clos_1458 ribonuclease III; TIGRFAM: ribonuclease III; PFAM: ribonuclease III; double-stranded RNA binding domain protein; SMART: ribonuclease III; double-stranded RNA binding domain protein YP_003164370.1 TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: beta-ketoacyl synthase; KEGG: bay:RBAM_011340 3-oxoacyl-(acyl carrier protein) synthase II YP_003164371.1 TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; KEGG: aba:acid345_4505 acyl carrier protein YP_003164372.1 with PdxST is involved in the biosynthesis of pyridoxal 5'-phosphate; PdxT catalyzes the hydrolysis of glutamine to glutamate and ammonia; PdxS utilizes the ammonia to synthesize pyridoxal 5'-phosphate YP_003164373.1 with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate YP_003164374.1 KEGG: cbe:Cbei_2671 non-specific serine/threonine protein kinase; PFAM: SNF2-related protein; helicase; type III restriction protein res subunit; SMART: DEAD-like helicases ; helicase domain protein YP_003164375.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cno:NT01CX_0504 ribosomal-protein-alanine acetyltransferase YP_003164376.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: fnu:FN0370 signal peptidase I YP_003164377.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_003164378.1 KEGG: conserved hypothetical protein YP_003164379.1 involved in de novo purine biosynthesis YP_003164380.1 KEGG: hypothetical protein, conserved in P. falciparum YP_003164382.1 KEGG: ssp:SSP1919 hypothetical protein YP_003164383.1 PFAM: ATPase AAA; SMART: AAA ATPase; KEGG: fnu:FN0297 recombination factor protein RarA YP_003164384.1 KEGG: aoe:Clos_0936 methylated-DNA--protein- cysteine methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding YP_003164385.1 KEGG: fnu:FN1099 hypothetical protein YP_003164386.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: cjd:JJD26997_2032 plasmid addiction system poison protein YP_003164388.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: cbt:CLH_1956 oligo-1,6-glucosidase YP_003164389.1 PFAM: glycoside hydrolase family 4; KEGG: cpe:CPE0199 maltose-6'-phosphate glucosidase YP_003164390.1 PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: ssu:SSU05_0395 transcriptional regulator YP_003164391.1 TIGRFAM: PTS system, alpha-glucoside-specific IIBC subunit; PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system EIIC; phosphotransferase system PTS EIIB protein; KEGG: bli:BL03019 phosphotransferase system (PTS) maltose-specific enzyme IICB component YP_003164392.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: ssv:SSU98_0383 metal-dependent hydrolase YP_003164393.1 amylomaltase; acts to release glucose from maltodextrins YP_003164396.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase; KEGG: cno:NT01CX_2420 phosphoribosylglycinamide formyltransferase YP_003164397.1 KEGG: fnu:FN0986 phosphoribosylaminoimidazole synthetase; TIGRFAM: phosphoribosylformylglycinamidine cyclo- ligase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein YP_003164398.1 PFAM: YCII-related; KEGG: cac:CA_P0038 hypothetical protein YP_003164399.1 TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; KEGG: bln:Blon_1958 amidophosphoribosyltransferase YP_003164400.1 KEGG: cbe:Cbei_1055 phosphoribosylaminoimidazole- succinocarboxamide synthase; TIGRFAM: phosphoribosylaminoimidazole- succinocarboxamide synthase; PFAM: SAICAR synthetase YP_003164401.1 KEGG: cac:CAC1390 phosphoribosylaminoimidazole carboxylase catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase YP_003164402.1 KEGG: cno:NT01CX_2418 phosphoribosylformylglycinamidine synthase; TIGRFAM: phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein domain protein YP_003164403.1 PFAM: arsenate reductase; KEGG: cth:Cthe_1508 hypothetical protein YP_003164404.1 KEGG: fnu:FN0873 protease IV; TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49 YP_003164405.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-subunit beta is inserted between the strands, where it probes for the presence of a lesion YP_003164406.1 TIGRFAM: GTP-binding protein Era; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; Miro domain protein; KEGG: fnu:FN0270 GTP-binding protein Era YP_003164407.1 TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein; KEGG: cpr:CPR_2595 PhnA family protein YP_003164408.1 TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; KEGG: fnu:FN0223 ComE operon protein 3 YP_003164409.1 KEGG: cbk:CLL_A3296 prokaryotic N-methylation motif domain protein YP_003164411.1 KEGG: fnu:FN0848 hypothetical protein YP_003164412.1 KEGG: fnu:FN0847 hypotheticalprotein YP_003164413.1 PFAM: hypothetical protein; TPR repeat-containing protein; SMART: hypothetical protein; KEGG: fnu:FN0847 hypotheticalprotein YP_003164414.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: asu:Asuc_0551 cation diffusion facilitator family transporter YP_003164416.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: amt:Amet_1136 MATE efflux family protein YP_003164417.1 TIGRFAM: phosphoheptose isomerase; KEGG: fnu:FN0502 phosphoheptose isomerase YP_003164418.1 PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: fnu:FN0503 LysR family transcriptional regulator YP_003164419.1 KEGG: ssa:SSA_0252 hypothetical protein YP_003164420.1 catalyzes the formation of asparagine from aspartate and ammonia YP_003164421.1 KEGG: cbl:CLK_2261 bifunctional riboflavin biosynthesis protein RibAB; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II YP_003164422.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_003164423.1 TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; KEGG: fnu:FN1506 5-amino-6-(5- phosphoribosylamino)uracil reductase YP_003164424.1 KEGG: fnu:FN1505 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 67-dimethyl-8-ribityllumazine synthase YP_003164425.1 KEGG: ccv:CCV52592_1537 30S ribosomal protein S12 YP_003164426.1 KEGG: cco:CCC13826_1241 hypothetical protein YP_003164427.1 KEGG: amt:Amet_4336 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_003164428.1 TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; (uracil-5)-methyltransferase; KEGG: fnu:FN1713 tRNA (uracil-5-) - methyltransferase YP_003164429.1 PFAM: ATPase associated with various cellular activities AAA_5; KEGG: acl:ACL_0633 McrBC 5-methylcytosine restriction system component YP_003164430.1 KEGG: acl:ACL_0634 McrBC 5-methylcytosine restriction system component YP_003164431.1 TIGRFAM: ATP/cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: ssa:SSA_0482 ATP:cobalamin adenosyl transferase YP_003164432.1 KEGG: cno:NT01CX_0903 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein YP_003164433.1 TIGRFAM: ribokinase; PFAM: PfkB domain protein; KEGG: ctc:CTC02352 ribokinase YP_003164434.1 PFAM: inosine/uridine-preferring nucleoside hydrolase; KEGG: ecg:E2348_C_2308 ribonucleoside hydrolase 2 YP_003164435.1 KEGG: cpf:CPF_2817 LacI family transcription regulator; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI YP_003164436.1 KEGG: upa:UPA3_0500 hypothetical protein YP_003164437.1 PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: cja:CJA_2823 OmpA family protein YP_003164438.1 KEGG: pau:PA14_32930 hypothetical protein YP_003164439.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: msu:MS2010 NemA protein YP_003164441.1 KEGG: GI20649 gene product from transcript GI20649- RA YP_003164442.1 KEGG: fnu:FN0389 hypothetical protein YP_003164443.1 TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; KEGG: fnu:FN0254 hypothetical protein YP_003164446.1 PFAM: dihydrouridine synthase; KEGG: fnu:FN0692 nitrogen regulation protein NifR3 YP_003164447.1 PFAM: conserved hypothetical protein; KEGG: cdf:CD2238 hypothetical protein YP_003164448.1 PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: cpy:Cphy_0745 peptidase U61 LD- carboxypeptidase A YP_003164449.1 PFAM: peptidase M19 renal dipeptidase; KEGG: amt:Amet_3077 membrane dipeptidase YP_003164450.1 PFAM: peptidase C26; glutamine amidotransferase class-I; KEGG: tte:TTE2700 glutamine amidotransferase YP_003164451.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_003164452.1 PFAM: hypotheticalprotein; SMART: hypothetical protein; KEGG: bce:BC3350 TPR repeat-containing protein YP_003164453.1 KEGG: bce:BC3350 hypotheticalprotein YP_003164454.1 PFAM: hypotheticalprotein; SMART: hypothetical protein; KEGG: cpr:CPR_0236 DnaJ domain-containing protein YP_003164455.1 TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin Txe/YoeB; KEGG: ckl:CKL_2072 hypothetical protein YP_003164456.1 PFAM: protein of unknown function DUF172; KEGG: hsm:HSM_1142 hypothetical protein YP_003164457.1 KEGG: fnu:FN1986 hypothetical protein YP_003164458.1 KEGG: fnu:FN1986 hypothetical protein YP_003164459.1 KEGG: hypothetical protein YP_003164460.1 PFAM: protein of unknown function DUF541; KEGG: shl:Shal_2682 hypothetical protein YP_003164461.1 TIGRFAM: translation elongation factor P; PFAM: Elongation factor P ; Elongation factor P/YeiP protein; KEGG: fnu:FN0720 elongation factor P YP_003164462.1 KEGG: sgo:SGO_1412 hypothetical protein YP_003164463.1 KEGG: hypothetical protein YP_003164465.1 PFAM: DEAD/DEAH box helicase; helicase domain protein; SMART: DEAD-like helicases ; helicase; KEGG: fnu:FN1975 ATP-dependent RNA helicase YP_003164466.1 PFAM: propeptide PepSY amd peptidase M4; KEGG: mma:MM_1695 hypothetical protein YP_003164467.1 PFAM: propeptide PepSY amd peptidase M4; KEGG: mma:MM_1695 hypothetical protein YP_003164468.1 PFAM: propeptide PepSY amd peptidase M4; KEGG: mma:MM_1695 hypothetical protein YP_003164469.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: fnu:FN0585 two-component response regulator CzcR YP_003164470.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: fnu:FN0586 two-component sensor kinase CzcS YP_003164471.1 KEGG: ctc:CTC01162 membrane associated protein YP_003164472.1 KEGG: GJ19949 gene product from transcript GJ19949- RA YP_003164473.1 KEGG: fnu:FN0665 N-acetylmuramoyl-L-alanine amidase YP_003164474.1 KEGG: fnu:FN0665 N-acetylmuramoyl-L-alanine amidase YP_003164476.1 PFAM: protein of unknown function DUF1311; KEGG: fnu:FN0389 hypothetical protein YP_003164477.1 KEGG: smd:Smed_0465 conserved hypothetical transmembrane signal peptide protein YP_003164478.1 KEGG: aba:acid345_4150 hypothetical protein YP_003164479.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_003164480.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity YP_003164481.1 KEGG: ctc:CTC01960 membrane associated protein YP_003164482.1 PFAM: phosphotransferase KptA/Tpt1; KEGG: fnu:FN1102 tRNA 2'phosphotransferase YP_003164483.1 PFAM: oxidoreductase domain protein; semialdehyde dehydrogenase NAD - binding; oxidoreductase domain; KEGG: cbe:Cbei_3259 oxidoreductase domain protein YP_003164484.1 PFAM: glycosyl transferase family 2; KEGG: cdf:CD2774 teichuronic acid biosynthesis glycosyl transferase YP_003164485.1 KEGG: ngo:NGO0226 hypothetical protein YP_003164486.1 KEGG: ngk:NGK_0360 MafB1 YP_003164488.1 PFAM: protein of unknown function DUF1722; KEGG: ssa:SSA_0915 hypothetical protein YP_003164489.1 KEGG: tde:TDE0794 hypothetical protein YP_003164490.1 PFAM: phosphoglycerate mutase; KEGG: lmo:lmo1244 hypothetical protein YP_003164491.1 KEGG: fnu:FN1391 acetyltransferase YP_003164492.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cpy:Cphy_1153 ABC transporter YP_003164493.1 PFAM: NMT1/THI5 like domain protein; KEGG: cpy:Cphy_1152 NMT1/THI5-like domain- containing protein YP_003164494.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: cpy:Cphy_1151 binding-protein-dependent transport systems inner membrane component YP_003164495.1 PFAM: protein of unknown function DUF77; KEGG: dsy:DSY4448 hypothetical protein YP_003164496.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: sah:SaurJH1_2745 lipopolysaccharide biosynthesis protein YP_003164497.1 TIGRFAM: histidinol phosphate phosphatase HisJ family; PFAM: PHP domain protein; KEGG: tte:TTE2610 PHP family histidinol phosphatase/hydrolase YP_003164498.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: bcy:Bcer98_1777 cold-shock DNA-binding domain- containing protein YP_003164499.1 KEGG: hypothetical protein YP_003164500.1 KEGG: cbk:CLL_A1609 hypothetical protein YP_003164501.1 KEGG: cbe:Cbei_4407 hypothetical protein YP_003164502.1 KEGG: fnu:FN1129 chromosome partition protein smc YP_003164503.1 KEGG: hypothetical protein YP_003164504.1 PFAM: leucine-rich repeat protein; KEGG: cpy:Cphy_1815 leucine-rich repeat-containing protein YP_003164505.1 PFAM: Tannase and feruloyl esterase; KEGG: msu:MS2241 hypothetical protein YP_003164506.1 KEGG: viral A-type inclusion protein YP_003164507.1 KEGG: chu:CHU_1120 membrane protein YP_003164508.1 PFAM: aldo/keto reductase; KEGG: amu:Amuc_1807 aldo/keto reductase YP_003164509.1 PFAM: antibiotic biosynthesis monooxygenase; KEGG: eca:ECA1485 lipoprotein YP_003164510.1 PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: lmo:lmo0430 hypothetical protein YP_003164511.1 PFAM: cupin; KEGG: lfe:LAF_0344 hypothetical protein YP_003164512.1 KEGG: bfr:BF4307 flavodoxin YP_003164513.1 KEGG: conserved hypothetical protein YP_003164514.1 KEGG: chu:CHU_1120 membrane protein YP_003164515.1 PFAM: heat shock protein 70; KEGG: bcz:BCZK2904 heat shock protein DnaK YP_003164516.1 PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: hypothetical protein YP_003164517.1 KEGG: IP3 receptor calcium ion channel protein YP_003164518.1 KEGG: sak:SAK_0429 hypothetical protein YP_003164520.1 KEGG: neq:NEQ410 hypothetical protein YP_003164521.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_003164522.1 PFAM: rhodanese; SMART: Rhodanese domain protein; KEGG: cpy:Cphy_0737 rhodanese YP_003164524.1 KEGG: fnu:FN1605 adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase; SMART: adenylosuccinate synthetase YP_003164525.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase; KEGG: cbe:Cbei_1772 HAD-superfamily hydrolase, subfamily IA, variant 3 YP_003164526.1 PFAM: HutP family protein; KEGG: cbe:Cbei_1078 HutP YP_003164527.1 PFAM: dehydroquinase class II; KEGG: cbe:Cbei_4570 3-dehydroquinate dehydratase YP_003164528.1 PFAM: shikimate kinase; KEGG: cac:CAC0898 shikimate kinase YP_003164529.1 KEGG: ppr:PBPRA2948 hypothetical protein YP_003164531.1 KEGG: conserved hypothetical protein YP_003164532.1 PFAM: shikimate dehydrogenase substrate binding domain protein; shikimate/quinate 5-dehydrogenase; KEGG: cno:NT01CX_0621 shikimate 5-dehydrogenase YP_003164533.1 PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: ctc:CTC02399 ribosomal small subunit pseudouridine synthase A YP_003164534.1 KEGG: ckl:CKL_0789 hypothetical protein; TIGRFAM: chorismate mutase; PFAM: chorismate mutase; prephenate dehydratase; amino acid-binding ACT domain protein YP_003164535.1 KEGG: bca:BCE_A0067 IS605 family transposase OrfB; TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB YP_003164536.1 TIGRFAM: phosphomevalonate kinase; PFAM: GHMP kinase domain protein; GHMP kinase; KEGG: sak:SAK_1355 phosphomevalonate kinase YP_003164537.1 catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate YP_003164538.1 KEGG: cbk:CLL_A0793 HAD-superfamily subfamily IB hydrolase YP_003164539.1 PFAM: plasmid stabilization system; KEGG: ana:asl4561 RelE protein YP_003164540.1 KEGG: fma:FMG_1331 hypothetical protein YP_003164541.1 TIGRFAM: ribosome recycling factor; PFAM: ribosome recycling factor; KEGG: fnu:FN1623 ribosome recycling factor (RRF) YP_003164542.1 TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: fnu:FN1622 uridylate kinase YP_003164543.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_003164544.1 PFAM: hypotheticalprotein; SMART: hypothetical protein; KEGG: cts:Ctha_0439 TPR repeat-containing protein YP_003164545.1 PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: bga:BG0193 hypothetical protein YP_003164546.1 KEGG: aae:aq_1896 hypothetical protein YP_003164547.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_003164548.1 KEGG: Viral A-type inclusion protein repeat YP_003164549.1 KEGG: fnu:FN1231 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein; SMART: CBS domain containing protein YP_003164550.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: dno:DNO_0531 short-chain dehydrogenase/reductase family protein YP_003164551.1 KEGG: fma:FMG_1483 hypothetical protein YP_003164552.1 catalyzes the release of the N-terminal amino acid from a tripeptide YP_003164553.1 PFAM: SCP-like extracellular; KEGG: cpy:Cphy_1940 SCP-like extracellular YP_003164554.1 PFAM: hypotheticalprotein; KEGG: ste:STER_0258 hypothetical protein YP_003164555.1 KEGG: stl:stu0209 hypothetical protein YP_003164556.1 KEGG: chu:CHU_1120 membrane protein YP_003164557.1 KEGG: csc:Csac_1041 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein YP_003164559.1 TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; KEGG: fnu:FN1851 ribonuclease PH YP_003164560.1 KEGG: cbe:Cbei_5028 1-acyl-sn-glycerol-3-phosphate acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase YP_003164561.1 PFAM: regulatory protein RecX; KEGG: cac:CAC2410 recombination regulator RecX YP_003164562.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_003164563.1 PFAM: thymidylate kinase; KEGG: cbf:CLI_0111 thymidylate kinase YP_003164564.1 KEGG: bxe:Bxe_A3229 ketol-acid reductoisomerase; TIGRFAM: ketol-acid reductoisomerase; PFAM: acetohydroxy acid isomeroreductase catalytic domain protein; acetohydroxy acid isomeroreductase YP_003164565.1 KEGG: fnu:FN1825 hypothetical protein YP_003164566.1 PFAM: DNA alkylation repair enzyme; KEGG: smu:SMU.60 DNA alkylation repair enzyme YP_003164567.1 PFAM: methyltransferase type 11; KEGG: ssa:SSA_1765 hypothetical protein YP_003164568.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: tde:TDE0673 hypothetical protein YP_003164569.1 KEGG: ssa:SSA_2385 hypothetical protein YP_003164570.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gtn:GTNG_1524 ABC transporter ATP-binding protein YP_003164571.1 KEGG: cbt:CLH_0305 3-isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase YP_003164572.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: dsy:DSY2033 hypothetical protein YP_003164573.1 TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: swo:Swol_1074 DNA-damage-inducibile protein YP_003164574.1 KEGG: pmr:PMI1215 hypothetical protein YP_003164576.1 KEGG: ssa:SSA_2385 hypothetical protein YP_003164577.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gtn:GTNG_1524 ABC transporter ATP-binding protein YP_003164578.1 KEGG: fnu:FN0958 hypothetical protein YP_003164579.1 KEGG: cpy:Cphy_3358 3-isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase YP_003164580.1 PFAM: OmpA/MotB domain protein; KEGG: paa:Paes_1489 OmpA/MotB domain protein YP_003164581.1 KEGG: pfo:Pfl01_1228 OmpA/MotB YP_003164583.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: dsy:DSY2033 hypothetical protein YP_003164584.1 TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: swo:Swol_1074 DNA-damage-inducibile protein YP_003164585.1 KEGG: cbe:Cbei_2749 conserved hypothetical membrane spanning protein YP_003164588.1 KEGG: shw:Sputw3181_3567 MORN repeat-containing protein YP_003164589.1 KEGG: hypothetical protein YP_003164590.1 TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; KEGG: sha:SH0973 isopropylmalate isomerase small subunit YP_003164591.1 KEGG: bcy:Bcer98_1125 isopropylmalate isomerase large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: aconitate hydratase domain protein YP_003164592.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: lin:pli0008 hypothetical protein YP_003164593.1 PFAM: protein of unknown function DUF1963; KEGG: lsp:Bsph_0301 hypothetical protein YP_003164594.1 PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier- protein (ACP)] synthase III; KEGG: fnu:FN1850 3-oxoacyl-[acyl-carrier-protein] synthase III YP_003164595.1 TIGRFAM: adenylate-forming enzyme; KEGG: fnu:FN1849 coenzyme F390 synthetase YP_003164596.1 PFAM: beta-lactamase; KEGG: fnu:FN1848 metal dependent hydrolase YP_003164597.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; short- chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; NmrA family protein; KEGG: fnu:FN1847 dTDP-4-dehydrorhamnose 3,5- epimerase YP_003164598.1 PFAM: glycosyltransferase 28 domain; KEGG: ssa:SSA_1322 glycosyl transferase YP_003164599.1 KEGG: fnu:FN1846 hypothetical protein YP_003164600.1 KEGG: fnu:FN1845 ceramide glucosyltransferase YP_003164601.1 PFAM: short-chain dehydrogenase/reductase SDR; NAD- dependent epimerase/dehydratase; KEGG: fnu:FN1844 ketoacyl reductase HetN YP_003164602.1 PFAM: metallophosphoesterase; KEGG: cth:Cthe_2169 metallophosphoesterase YP_003164603.1 PFAM: endoribonuclease L-PSP; KEGG: dra:DR_0033 hypothetical protein YP_003164604.1 PFAM: metallophosphoesterase; KEGG: cth:Cthe_2169 metallophosphoesterase YP_003164605.1 KEGG: cno:NT01CX_1387 hypothetical protein YP_003164606.1 KEGG: sah:SaurJH1_1132 acyltransferase 3 YP_003164607.1 PFAM: PspC domain protein; KEGG: cbe:Cbei_4094 phage shock protein C, PspC YP_003164608.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: cbb:CLD_3719 flavodoxin-like fold domain- containing protein YP_003164610.1 KEGG: bca:BCE_2016 hypothetical protein YP_003164611.1 TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: csc:Csac_1145 2-isopropylmalate synthase YP_003164612.1 TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; KEGG: cbe:Cbei_3176 aspartate racemase YP_003164613.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: noc:Noc_1261 hypothetical protein YP_003164614.1 TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: mac:MA3791 acetolactate synthase 3 regulatory subunit YP_003164615.1 KEGG: mba:Mbar_A0218 acetolactate synthase 3 catalytic subunit; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP- binding YP_003164616.1 catalyzes the formation of 2-oxobutanoate from L-threonine YP_003164617.1 KEGG: eca:ECA0915 hypothetical protein YP_003164618.1 KEGG: tte:TTE0020 dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase YP_003164620.1 KEGG: aas:Aasi_0340 hypothetical protein YP_003164621.1 PFAM: hypotheticalprotein; Tetratricopeptide TPR_3; Sel1 domain protein repeat- containing protein; SMART: Sel1 domain protein repeat-containing protein; hypothetical protein; KEGG: aas:Aasi_0895 hypothetical protein YP_003164622.1 PFAM: Sel1 domain protein repeat-containing protein; TPR repeat-containing protein; SMART: hypothetical protein; KEGG: TPR Domain containing protein YP_003164623.1 KEGG: fnu:FN1481 queuine tRNA-ribosyltransferase; TIGRFAM: queuine tRNA-ribosyltransferase; tRNA- guanine transglycosylase, various specificities; PFAM: queuine/other tRNA-ribosyltransferase YP_003164624.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: fnu:FN1343 seC-independent protein TatD YP_003164625.1 KEGG: hypothetical protein YP_003164626.1 PFAM: protein of unknown function DUF1311; KEGG: fnu:FN0389 hypothetical protein YP_003164627.1 KEGG: bwe:BcerKBAB4_2961 hypothetical protein YP_003164628.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2 YP_003164629.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_003164630.1 PFAM: Hsp33 protein; KEGG: fnu:FN1610 33 kDa chaperonin YP_003164631.1 KEGG: spa:M6_Spy1340 unknown phage protein YP_003164633.1 KEGG: cbh:CLC_2202 lipoprotein YP_003164634.1 TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase LpxD; transferase; KEGG: fnu:FN1909 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_003164635.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: fnu:FN1911 outer membrane protein YP_003164636.1 PFAM: protein of unknown function DUF490; KEGG: fnu:FN1912 hypothetical protein YP_003164637.1 PFAM: van Willebrand factor A; KEGG: amr:AM1_4269 vancomycin B-type resistance protein VanW YP_003164638.1 KEGG: gdj:Gdia_2287 hypothetical protein YP_003164639.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: fnu:FN1003 outer membrane protein P1 precursor YP_003164641.1 TIGRFAM: NAD+ synthetase; PFAM: NAD synthase; ExsB family protein; KEGG: pab:PAB2244 NAD synthetase YP_003164642.1 catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate YP_003164643.1 TIGRFAM: cytidyltransferase-related domain protein; PFAM: citrate lyase ligase domain protein; KEGG: nph:NP0310A nicotinamide-nucleotide adenylyltransferase 2 YP_003164644.1 catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate in glycolysis YP_003164645.1 PFAM: protein of unknown function DUF28; KEGG: aoe:Clos_1778 hypothetical protein YP_003164646.1 PFAM: methyltransferase small; KEGG: fnu:FN0782 methyltransferase YP_003164647.1 TIGRFAM: lactaldehyde reductase; PFAM: iron-containing alcohol dehydrogenase; KEGG: cpr:CPR_0927 L-1,2-propanediol oxidoreductase YP_003164648.1 PFAM: ATP synthase I YP_003164649.1 KEGG: conserved hypothetical protein YP_003164650.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: cth:Cthe_1855 methyltransferase type 11 YP_003164651.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: fnu:FN1800 peptidyl-prolyl cis-trans isomerase YP_003164653.1 PFAM: DHHA2 domain protein; phosphoesterase RecJ domain protein; KEGG: bld:BLi03882 manganese-dependent inorganic pyrophosphatase YP_003164654.1 PFAM: UvrD/REP helicase; KEGG: fnu:FN1149 ATP-dependent nuclease subunit A YP_003164655.1 KEGG: fnu:FN1150 hypothetical protein YP_003164656.1 KEGG: viral A-type inclusion protein YP_003164657.1 PFAM: protein of unknown function UPF0150; KEGG: fma:FMG_0018 hypothetical protein YP_003164658.1 PFAM: YcfA family protein; KEGG: bte:BTH_II1999 hypothetical protein YP_003164659.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: fnu:FN0538 protein translocase subunit SecG YP_003164660.1 KEGG: fnu:FN1366 triosephosphate isomerase; TIGRFAM: triosephosphate isomerase; PFAM: triosephosphate isomerase YP_003164661.1 KEGG: amc:MADE_02323 hypothetical protein YP_003164662.1 TIGRFAM: ribosomal protein S20; PFAM: ribosomal protein S20; KEGG: fnu:FN1879 30S ribosomal protein S20P YP_003164663.1 PFAM: regulatory protein TetR; KEGG: fnu:FN1034 TetR family transcriptional regulator YP_003164664.1 KEGG: fnu:FN1035 iron-sulfur flavoprotein YP_003164665.1 KEGG: fnu:FN1036 hypothetical protein YP_003164666.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate YP_003164667.1 PFAM: Autotransporter beta- domain protein; Haemagluttinin repeat-containing protein; KEGG: fnu:FN1449 hypothetical protein YP_003164668.1 KEGG: hypothetical protein YP_003164669.1 KEGG: ssa:SSA_1129 periplasmic iron transport lipoprotein YP_003164670.1 TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: sgo:SGO_1164 tat translocated dye-type peroxidase family protein YP_003164671.1 PFAM: iron permease FTR1; KEGG: stl:stu1022 hypothetical protein YP_003164672.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: ssa:SSA_1132 TatC, sec-independent protein translocase YP_003164673.1 PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: ste:STER_1020 sec-independent protein translocase protein TatA YP_003164674.1 PFAM: DNA polymerase III delta; KEGG: fnu:FN0917 hypothetical protein YP_003164675.1 KEGG: emi:Emin_0145 hypothetical protein YP_003164676.1 PFAM: LemA family protein; KEGG: emi:Emin_0378 LemA family protein YP_003164677.1 KEGG: fps:FP1116 hypothetical protein YP_003164678.1 KEGG: cth:Cthe_0914 hypothetical protein YP_003164679.1 PFAM: protein of unknown function DUF1703; KEGG: fnu:FN1654 hypothetical protein YP_003164680.1 TIGRFAM: agmatinase; PFAM: arginase/agmatinase/formiminoglutamase; KEGG: cbk:CLL_A1017 agmatinase YP_003164681.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine YP_003164682.1 PFAM: protein of unknown function DUF847; KEGG: bvi:Bcep1808_2272 hypothetical protein YP_003164683.1 PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; Cys/Met metabolism pyridoxal- phosphate-dependent protein; KEGG: aoe:Clos_0383 Orn/Lys/Arg decarboxylase major region YP_003164685.1 S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine YP_003164686.1 KEGG: taf:THA_1840 PQQ enzyme repeat domain protein YP_003164687.1 KEGG: cth:Cthe_1161 hypothetical protein YP_003164688.1 PFAM: hypothetical protein; KEGG: sgo:SGO_0373 malate permease YP_003164689.1 PFAM: glutamine synthetase; KEGG: tte:TTE0821 glutamine synthase YP_003164690.1 PFAM: SH3 type 3 domain protein; protein of unknown function DUF1058; SMART: SH3 domain protein; KEGG: ckl:CKL_0782 hypothetical protein YP_003164691.1 PFAM: SH3 type 3 domain protein; protein of unknown function DUF1058; SMART: SH3 domain protein; KEGG: cpf:CPF_1562 NlpC/P60 family protein YP_003164692.1 PFAM: SH3 type 3 domain protein; protein of unknown function DUF1058; KEGG: bca:BCE_A0203 enterotoxin YP_003164693.1 KEGG: fnu:FN0666 hypothetical protein YP_003164694.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cac:CAC0112 glutamine ABC transporter ATP- binding protein YP_003164695.1 TIGRFAM: polar amino acid ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: cac:CAC0111 glutamine-binding periplasmic protein fused to glutamine permease YP_003164696.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: cbe:Cbei_2391 extracellular solute-binding protein, family 3 YP_003164697.1 KEGG: fps:FP0001 chromosome segregation ATPase YP_003164698.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: bay:RBAM_006650 YdjL YP_003164699.1 KEGG: fnu:FN0409 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, subunit alpha; PFAM: acetyl-CoA carboxylase subunit alpha YP_003164700.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, subunit beta; KEGG: fnu:FN0408 acetyl-coenzyme A carboxylase carboxyl transferase subunit beta YP_003164701.1 PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: fnu:FN1026 tRNA pseudouridine synthase A YP_003164702.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: fnu:FN1027 rod shape-determining protein RodA YP_003164703.1 PFAM: peptidase M16 domain protein; KEGG: fnu:FN1029 zinc protease YP_003164704.1 PFAM: permease YjgP/YjgQ family protein; KEGG: fnu:FN1030 hypothetical protein YP_003164705.1 PFAM: permease YjgP/YjgQ family protein; KEGG: fnu:FN1031 hypothetical protein YP_003164706.1 PFAM: colicin V production protein; KEGG: fnu:FN1032 hypothetical protein YP_003164707.1 KEGG: dsy:DSY4022 hypothetical protein; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein YP_003164708.1 TIGRFAM: protein-export membrane protein SecF; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: fnu:FN0700 protein translocase subunit SecF YP_003164709.1 TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: fnu:FN0699 protein translocase subunit SecD YP_003164710.1 PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: fnu:FN0698 DNA integration/recombination/invertion protein YP_003164711.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_003164712.1 PFAM: peptidase S51 dipeptidase E; KEGG: fnu:FN1116 peptidase E YP_003164713.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: fnu:FN0695 ABC transporter ATP-binding protein YP_003164714.1 catalyzes the formation of NAD(+) from nicotinamide ribonucleotide YP_003164715.1 PFAM: protein of unknown function DUF195; KEGG: cps:CPS_3589 hypothetical protein YP_003164716.1 TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN; KEGG: pin:Ping_1819 ribonuclease BN YP_003164717.1 TIGRFAM: thiamine biosynthesis/tRNA modification protein ThiI; PFAM: thiamine biosynthesis protein; THUMP domain protein; ExsB family protein; KEGG: fma:FMG_0559 thiamine biosynthesis protein YP_003164718.1 PFAM: aminotransferase class V; KEGG: cdf:CD0753 cysteine desulfurase YP_003164719.1 PFAM: diacylglycerol kinase; phosphoesterase PA- phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: cac:CAC1294 bifunctional diacylglycerol kinase/phosphatase B YP_003164720.1 PFAM: protein of unknown function UPF0054; KEGG: fnu:FN0746 metal-binding protein YP_003164721.1 KEGG: ctc:CTC02023 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; metal-dependent phosphohydrolase 7TM intracellular region; SMART: metal-dependent phosphohydrolase HD region YP_003164722.1 SMART: helicase c2; Helicase-like, DEXD box c2 type; DEAD-like helicases; KEGG: fnu:FN0743 ATP-dependent helicase DinG YP_003164723.1 KEGG: hypothetical protein YP_003164724.1 PFAM: protein of unknown function DUF161; KEGG: cbt:CLH_0343 transporter YP_003164725.1 KEGG: fnu:FN0298 histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); anticodon-binding domain protein YP_003164726.1 PFAM: protein of unknown function DUF554; KEGG: tpd:Teth39_1727 hypothetical protein YP_003164727.1 TIGRFAM: aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); tRNA synthetase class II (G H P and S); GAD domain protein; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: fnu:FN0299 aspartyl-tRNA synthetase YP_003164728.1 KEGG: ssa:SSA_1630 hypothetical protein YP_003164729.1 TIGRFAM: peptide chain release factor 1; PFAM: class I peptide chain release factor; PCRF domain protein; KEGG: fnu:FN1332 peptide chain release factor 1 YP_003164730.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: fnu:FN1331 methyltransferase YP_003164731.1 KEGG: amu:Amuc_1579 hypothetical protein YP_003164732.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_003164735.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: sgo:SGO_2006 thioredoxin signature protein YP_003164736.1 KEGG: fnu:FN1104 Holliday junction DNA helicase RuvA; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein RuvA domain I; SMART: DNA-binding protein YP_003164737.1 KEGG: cdf:CD3562 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu/hydantoin racemase YP_003164738.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: fnu:FN0060 D-alanyl-D-alanine carboxypeptidase YP_003164739.1 KEGG: smu:SMU.1109c integral membrane protein; permease YP_003164740.1 PFAM: protein of unknown function DUF34; KEGG: fnu:FN1316 NGG1-interacting factor 3 YP_003164741.1 KEGG: afl:Aflv_0856 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) YP_003164742.1 TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 1.1 domain protein; sigma-70 region 4 domain protein; KEGG: fnu:FN1318 RNA polymerase sigma factor RpoD YP_003164743.1 KEGG: fnu:FN1319 DNA primase; TIGRFAM: DNA primase; PFAM: DNA primase catalytic core domain; zinc finger CHC2-family protein; TOPRIM domain protein; SMART: zinc finger CHC2-family protein; Toprim sub domain protein YP_003164745.1 Essential for recycling GMP and indirectly, cGMP YP_003164746.1 KEGG: fnu:FN2035 DNA-directed RNA polymerase beta' chain; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase subunit alpha; RNA polymerase Rpb1 domain 5; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 4; SMART: RNA polymerase I subunit A domain protein YP_003164748.1 TIGRFAM: DNA-directed RNA polymerase subunit beta; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 7; RNA polymerase Rpb2 domain 3; RNA polymerase Rpb2 domain 2; RNA polymerase beta subunit; KEGG: fnu:FN2036 DNA-directed RNA polymerase beta chain YP_003164749.1 TIGRFAM: ribosomal protein L7/L12; PFAM: ribosomal protein L7/L12; KEGG: esi:Exig_0086 ribosomal protein L7/L12 YP_003164750.1 PFAM: ribosomal protein L10; KEGG: fnu:FN2038 50S ribosomal protein L10P YP_003164751.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_003164752.1 KEGG: fnu:FN2040 50S ribosomal protein L11P; TIGRFAM: ribosomal protein L11; PFAM: ribosomal protein L11; SMART: ribosomal protein L11 YP_003164753.1 KEGG: fnu:FN2041 transcription antitermination protein NusG; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain protein; KOW domain protein; SMART: NGN domain protein; KOW domain protein YP_003164754.1 TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: swo:Swol_2348 preprotein translocase subunit SecE YP_003164755.1 TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; KEGG: fnu:FN2044 50S ribosomal protein L33P YP_003164756.1 KEGG: ssv:SSU98_0380 glucan phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35 YP_003164757.1 PFAM: transketolase; transketolase domain protein; KEGG: fnu:FN0295 transketolase YP_003164758.1 PFAM: transketolase; KEGG: fnu:FN0294 transketolase subunit A YP_003164759.1 PFAM: major facilitator superfamily MFS_1; KEGG: fnu:FN0222 melibiose carrier protein YP_003164760.1 KEGG: hypothetical protein YP_003164761.1 TIGRFAM: cytidyltransferase-related domain protein; PFAM: protein of unknown function DUF795; KEGG: fnu:FN0732 hypothetical protein YP_003164762.1 TIGRFAM: PTS system, sucrose-specific IIBC subunit; PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system EIIC; phosphotransferase system PTS EIIB protein; KEGG: sah:SaurJH1_2449 PTS system, sucrose-specific IIBC subunit YP_003164763.1 KEGG: bcl:ABC3765 sucrose-6-phosphate hydrolase; TIGRFAM: sucrose-6-phosphate hydrolase; PFAM: glycosyl hydrolase family 32 domain protein; SMART: glycoside hydrolase family 32 YP_003164764.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: lac:LBA0500 msm operon repressor YP_003164765.1 Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group YP_003164766.1 KEGG: pha:PSHAa0985 signal peptide YP_003164767.1 KEGG: efa:EF0730 hypothetical protein YP_003164768.1 KEGG: fnu:FN0261 pyruvate formate-lyase activating enzyme; TIGRFAM: pyruvate formate-lyase activating enzyme; PFAM: radical SAM domain protein YP_003164769.1 KEGG: fnu:FN0262 formate acetyltransferase; TIGRFAM: formate acetyltransferase; PFAM: pyruvate formate-lyase PFL; formate C- acetyltransferase glycine radical YP_003164770.1 KEGG: hypothetical protein YP_003164771.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_003164772.1 KEGG: cdf:CD1332 undecaprenyl-diphosphatase; TIGRFAM: undecaprenol kinase; PFAM: bacitracin resistance protein BacA YP_003164773.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_003164774.1 KEGG: ecl:EcolC_2148 outer membrane autotransporter YP_003164775.1 KEGG: fnu:FN0475 MiaB protein; TIGRFAM: RNA modification enzyme, MiaB family; tRNA- i(6)A37 thiotransferase enzyme MiaB; PFAM: protein of unknown function UPF0004 ; radical SAM protein; deoxyribonuclease/rho motif-related TRAM; SMART: Elongator protein 3/MiaB/NifB YP_003164776.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_003164777.1 KEGG: cth:Cthe_1184 hypothetical protein YP_003164778.1 KEGG: amt:Amet_1520 hypothetical protein YP_003164779.1 PFAM: patatin; KEGG: cno:NT01CX_0225 patatin-like phospholipase YP_003164780.1 PFAM: ferritin; KEGG: bwe:BcerKBAB4_1875 ferritin Dps family protein YP_003164781.1 TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; KEGG: fnu:FN1614 Mg(2+) chelatase family protein YP_003164782.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_003164783.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: esi:Exig_0561 cell envelope-related transcriptional attenuator YP_003164784.1 KEGG: bcy:Bcer98_3269 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase YP_003164785.1 PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: tye:THEYE_A0399 acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_003164786.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; RimK domain protein ATP-grasp; carbamoyl-phosphate synthetase large chain domain protein; KEGG: chy:CHY_1998 acetyl-CoA carboxylase, biotin carboxylase YP_003164787.1 PFAM: protein of unknown function DUF322; KEGG: fnu:FN1619 cytoplasmic protein YP_003164788.1 KEGG: fnu:FN1618 hypothetical protein YP_003164789.1 TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: fnu:FN1616 transcription antitermination protein NusB YP_003164790.1 catalyzes the formation of NAD(+) from nicotinamide ribonucleotide YP_003164791.1 PFAM: NQR2 and RnfD family protein; KEGG: fnu:FN1595 Na(+)-translocating NADH-quinone reductase subunit B YP_003164792.1 TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tpd:Teth39_2124 electron transport complex, RnfABCDGE type, C subunit YP_003164793.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: fnu:FN0664 2-nitropropane dioxygenase YP_003164794.1 KEGG: fnu:FN0663 hypothetical protein YP_003164795.1 PFAM: thioredoxin domain; KEGG: cpr:CPR_2350 thioredoxin YP_003164796.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; KEGG: stl:stu1169 UDP-glucose 4-epimerase YP_003164799.1 PFAM: peptidase M29 aminopeptidase II; KEGG: bld:BLi01660 hypothetical protein YP_003164800.1 TIGRFAM: PTS system, glucose subfamily, IIsubunit alpha; PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system EIIC; sugar- specific permease EIIA 1 domain; phosphotransferase system PTS EIIB protein; KEGG: emi:Emin_0921 PTS system, glucose-like IIB subunint YP_003164801.1 PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; KEGG: npu:Npun_R4395 DeoR family transcriptional regulator YP_003164802.1 KEGG: cbk:CLL_A1513 pyruvate formate-lyase; TIGRFAM: pyruvate formate-lyase; PFAM: pyruvate formate-lyase PFL; formate C- acetyltransferase glycine radical YP_003164803.1 KEGG: cbk:CLL_A1512 glycyl-radical enzyme activating family protein; TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: radical SAM protein YP_003164804.1 PFAM: transaldolase; KEGG: cbf:CLI_3594 transaldolase YP_003164805.1 PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; regulatory protein GntR HTH; SMART: regulatory protein DeoR; KEGG: cbk:CLL_A1511 DeoR family transcriptional regulator YP_003164806.1 PFAM: regulatory protein ArsR; Rhodanese domain protein; SMART: rhodanese; regulatory protein ArsR; KEGG: lci:LCK_p300014 thiosulfate sulfurtransferase YP_003164807.1 TIGRFAM: thioredoxin; PFAM: thioredoxin domain; KEGG: hps:HPSH_02685 thioredoxin YP_003164808.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sth:STH1072 thioredoxin reductase YP_003164809.1 PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: mbn:Mboo_0798 protein of unknown function DUF306, MetA and HslJ YP_003164810.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: amu:Amuc_0023 phenazine biosynthesis protein PhzF family YP_003164811.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: cac:CAC0875 permease YP_003164812.1 KEGG: fnu:FN0264 hypothetical protein YP_003164813.1 KEGG: fnu:FN0264 hypothetical protein YP_003164814.1 KEGG: fnu:FN1764 enolase; TIGRFAM: enolase; PFAM: enolase YP_003164815.1 KEGG: clpC; molecular chaperone YP_003164816.1 PFAM: 5'-nucleotidase domain protein; metallophosphoesterase; KEGG: apa:APP7_1813 Ser/Thr protein phosphatase family protein YP_003164817.1 PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: vha:VIBHAR_02086 hypothetical protein YP_003164818.1 TIGRFAM: NAD pyrophosphatase/5'-nucleotidase NadN; PFAM: 5'-nucleotidase domain protein; metallophosphoesterase; KEGG: tpp:TPASS_0104 5'-nucleotidase YP_003164820.1 PFAM: CutC family protein; KEGG: cpy:Cphy_2183 CutC family protein YP_003164821.1 KEGG: fnu:FN1482 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase; TIGRFAM: RelA/SpoT family protein; PFAM: RelA/SpoT domain protein; TGS domain protein; amino acid-binding ACT domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003164822.1 PFAM: acyltransferase 3; KEGG: fnu:FN2029 O-antigen acetylase YP_003164823.1 KEGG: fnu:FN2029 O-antigen acetylase YP_003164825.1 KEGG: fnu:FN0997 hypothetical protein YP_003164826.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: fnu:FN0494 short chain dehydrogenase YP_003164827.1 TIGRFAM: lipoprotein A; PFAM: Rare lipoprotein A; KEGG: paa:Paes_0220 lipoprotein A YP_003164828.1 PFAM: polysaccharide deacetylase; KEGG: cbf:CLI_2827 polysaccharide deacetylase family protein YP_003164829.1 KEGG: cbe:Cbei_4400 serine/threonine protein phosphatase-like protein YP_003164830.1 KEGG: fnu:FN0506 arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase YP_003164831.1 PFAM: phosphoglycerate mutase; KEGG: fnu:FN0911 alpha-ribazole-5'-phosphate phosphatase YP_003164832.1 KEGG: fnu:FN0539 ferrochelatase YP_003164833.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_003164834.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain YP_003164835.1 PFAM: cation transporter; KEGG: fnu:FN0993 trk system potassium uptake protein TrkG YP_003164836.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_003164837.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; KEGG: bfs:BF3485 anaerobic ribonucleoside- triphosphate reductase activating protein YP_003164838.1 PFAM: Tetrahydrodipicolinate succinyltransferase domain protein; transferase; KEGG: amt:Amet_3195 tetrahydrodipicolinate succinyltransferase domain-containing protein YP_003164839.1 PFAM: hypotheticalprotein; SMART: hypothetical protein; KEGG: cdf:CD2123 multiprotein-complex assembly protein YP_003164840.1 PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: amt:Amet_0476 peptidase U61, LD- carboxypeptidase A YP_003164841.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_003164842.1 KEGG: ccv:CCV52592_1603 pyrroline-5-carboxylate reductase YP_003164843.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_003164844.1 PFAM: methyltransferase small; Eco57I restriction endonuclease; KEGG: yen:YE1808 methyltransferase-endonuclease YP_003164845.1 PFAM: protein of unknown function DUF262; KEGG: cbl:CLK_2848 hypothetical protein YP_003164846.1 KEGG: lbr:LVIS_1494 transposase YP_003164847.1 KEGG: cpf:CPF_0688 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase YP_003164848.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pmo:Pmob_1177 GCN5-related N- acetyltransferase YP_003164849.1 PFAM: prephenate dehydrogenase; KEGG: cbe:Cbei_4568 prephenate dehydrogenase YP_003164850.1 KEGG: apa:APP7_0241 tetratricopeptide repeat (TPR) family protein YP_003164851.1 KEGG: cbe:Cbei_4577 3-deoxy-7-phosphoheptulonate synthase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA YP_003164852.1 PFAM: protein of unknown function DUF74; KEGG: lwe:lwe0170 hypothetical protein YP_003164854.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_003164855.1 KEGG: fnu:FN0608 exoribonuclease II; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonuclease; PFAM: ribonuclease II; ribonuclease B OB region domain; SMART: Cold shock protein YP_003164856.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: cpe:CPE2124 HD domain protein YP_003164857.1 KEGG: fnu:FN1287 protein translation initiation factor 1; TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein; SMART: RNA binding S1 domain protein YP_003164858.1 TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; KEGG: swo:Swol_2308 ribosomal protein L36 YP_003164859.1 PFAM: ribosomal protein S13; KEGG: amt:Amet_4452 30S ribosomal protein S13 YP_003164860.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_003164861.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_003164862.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_003164863.1 TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; KEGG: fnu:FN1282 50S ribosomal protein L17P YP_003164864.1 KEGG: fnu:FN0616 hypothetical protein YP_003164865.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: dsy:DSY1197 hypothetical protein YP_003164866.1 PFAM: ferric-uptake regulator; KEGG: fnu:FN2045 ferric uptake regulation protein YP_003164867.1 PFAM: ferritin; KEGG: tma:TM1128 ferritin YP_003164868.1 PFAM: type II secretion system protein E; SMART: AAA ATPase; KEGG: chy:CHY_0630 type IV pilus assembly protein PilB YP_003164869.1 KEGG: fnu:FN1994 hypothetical protein YP_003164870.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: fnu:FN1993 SUA5 protein YP_003164871.1 KEGG: fnu:FN1992 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase YP_003164872.1 TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: nucleotidyl transferase; transferase hexapeptide repeat containing protein; KEGG: fnu:FN1991 glucosamine-1-phosphate acetyltransferase YP_003164873.1 KEGG: hypothetical protein YP_003164874.1 KEGG: swp:swp_3832 hypothetical protein YP_003164875.1 PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: cdf:CD2775 minor teichoic acid biosynthesis protein YP_003164876.1 PFAM: glycosyl transferase family 2; KEGG: cdf:CD2776 glycosyl transferase YP_003164877.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: spe:Spro_3358 endonuclease/exonuclease/phosphatase YP_003164878.1 KEGG: fnu:FN1241 hypothetical protein YP_003164879.1 PFAM: GCN5-related N-acetyltransferase; KEGG: spd:SPD_1592 acetyltransferase, GNAT family protein YP_003164880.1 KEGG: mpu:MYPU_7410 ABC transporter permease/ATP- binding protein YP_003164882.1 KEGG: spw:SPCG_1353 hypothetical protein YP_003164885.1 TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: Starch synthase catalytic domain protein; glycosyl transferase group 1; KEGG: cth:Cthe_0282 glycogen/starch synthases, ADP- glucose type YP_003164886.1 TIGRFAM: glucose-1-phosphate adenylyltransferase; PFAM: nucleotidyl transferase; transferase hexapeptide repeat containing protein; KEGG: acl:ACL_0519 glucose-1-phosphate adenylyltransferase YP_003164887.1 KEGG: conserved hypothetical protein YP_003164888.1 PFAM: methyltransferase small; methyltransferase type 12; KEGG: bwe:BcerKBAB4_0096 methyltransferase small YP_003164889.1 PFAM: protein of unknown function DUF262; protein of unknown function DUF1524 RloF; KEGG: fma:FMG_0315 hypothetical protein YP_003164890.1 KEGG: fnu:FN1188 hypothetical protein YP_003164891.1 KEGG: fnu:FN1189 hypothetical protein YP_003164892.1 TIGRFAM: ATPase P; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: fnu:FN1190 cadmium-transporting ATPase YP_003164893.1 KEGG: fnu:FN1191 hypothetical protein YP_003164894.1 KEGG: fnu:FN1192 hypothetical protein YP_003164895.1 TIGRFAM: phosphoglycerate mutase 1 family; PFAM: phosphoglycerate mutase; KEGG: fnu:FN0729 phosphoglycerate mutase YP_003164896.1 This protein performs the mismatch recognition step during the DNA repair process YP_003164897.1 PFAM: OstA family protein; protein of unknown function DUF1239; KEGG: fnu:FN0694 S-layer protein YP_003164898.1 PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; KEGG: cdf:CD0784 N-acetylmuramoyl-L- alanine amidase YP_003164900.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_003164901.1 KEGG: ccv:CCV52592_0755 glutamate 5-kinase; TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein; SMART: PUA domain containing protein YP_003164903.1 converts 1,4-alpha-D-glucans to maltodextrin YP_003164904.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS YP_003164905.1 KEGG: fnu:FN1830 DNA polymerase III subunits gamma and tau; TIGRFAM: DNA polymerase III subunits gamma and tau; PFAM: ATPase AAA central domain protein; SMART: ATPase AAA YP_003164906.1 TIGRFAM: ribosomal protein L9; PFAM: ribosomal protein L9; KEGG: fnu:FN1828 50S ribosomal protein L9P YP_003164907.1 TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase; KEGG: lsp:Bsph_4763 replicative DNA helicase YP_003164908.1 PFAM: peptidase U32; KEGG: fnu:FN1826 protease YP_003164909.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: aoe:Clos_0943 two component transcriptional regulator YP_003164910.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: cbl:CLK_2842 sensory transduction histidine kinase YP_003164911.1 KEGG: fnu:FN0366 phosphoacetylglucosamine mutase; TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II YP_003164912.1 PFAM: peptidase C26; glutamine amidotransferase class-I; KEGG: fma:FMG_0210 glutamine amidotransferase YP_003164913.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: san:gbs1799 hypothetical protein YP_003164914.1 TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: haloacid dehalogenase type 3; haloacid dehalogenase; KEGG: chu:CHU_1225 HAD superfamily hydrolase YP_003164915.1 KEGG: fnu:FN1576 ATPase and helicase subunits involved in DNA replication YP_003164916.1 TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; cell division protein FtsA; KEGG: fnu:FN1577 rod shape-determining protein MreB YP_003164917.1 KEGG: bce:BC1788 lysophospholipase L2 YP_003164918.1 KEGG: fnu:FN1600 tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase YP_003164919.1 PFAM: GCN5-related N-acetyltransferase; KEGG: fnu:FN2046 acetyltransferase YP_003164920.1 PFAM: Heavy metal transport/detoxification protein; KEGG: aoe:Clos_1067 heavy metal transport/detoxification protein YP_003164921.1 TIGRFAM: outer membrane autotransporter barrel domain protein; autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta- domain protein; peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: fnu:FN1950 serine protease YP_003164922.1 PFAM: protein of unknown function DUF333; KEGG: saz:Sama_1095 hypothetical protein YP_003164924.1 KEGG: sph:MGAS10270_Spy0033 hypothetical protein YP_003164925.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_003164926.1 PFAM: iron-containing alcohol dehydrogenase; aldehyde dehydrogenase; KEGG: cpe:CPE2531 bifunctional acetaldehyde- CoA/alcohol dehydrogenase YP_003164927.1 PFAM: aldehyde dehydrogenase; KEGG: ssa:SSA_0774 NADP-dependent glyceraldehyde-3- phosphate dehydrogenase YP_003164928.1 PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: fnu:FN1901 Crp family transcriptional regulator YP_003164929.1 TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: sugar isomerase (SIS); glutamine amidotransferase class-II; KEGG: cbf:CLI_3593 glucosamine--fructose-6- phosphate aminotransferase, isomerizing YP_003164930.1 KEGG: cbe:Cbei_3242 hypothetical protein YP_003164931.1 KEGG: mxa:MXAN_6787 late embryogenesis abundant protein domain protein YP_003164932.1 PFAM: peptidase M50; KEGG: aae:aq_1853 hypothetical protein YP_003164933.1 KEGG: mja:MJ1214 type I restriction-modification enzyme 1, R subunit YP_003164934.1 KEGG: Beige/BEACH domain containing protein YP_003164935.1 KEGG: soz:Spy49_0146 thiol-activated cytolysin YP_003164936.1 PFAM: protein of unknown function UPF0029; KEGG: fnu:FN1907 thymidylate synthase YP_003164937.1 PFAM: conserved hypothetical protein; KEGG: cdf:CD0017 hypothetical protein YP_003164938.1 PFAM: major facilitator superfamily MFS_1; KEGG: cbk:CLL_A1695 transporter major facilitator family YP_003164939.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: fnu:FN0559 phosphoglucomutase YP_003164940.1 KEGG: fnu:FN0560 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: radical SAM protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003164941.1 PFAM: alanine racemase domain protein; KEGG: fnu:FN0561 proline synthetase associated protein YP_003164942.1 PFAM: protein of unknown function DUF552; KEGG: csc:Csac_1908 hypothetical protein YP_003164943.1 PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein; KEGG: fnu:FN1322 membrane metalloprotease YP_003164944.1 PFAM: ABC transporter; protein of unknown function RIO1; KEGG: amt:Amet_2350 hypothetical protein YP_003164945.1 KEGG: ssa:SSA_2031 hypothetical protein YP_003164946.1 TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: fnu:FN1225 UDP-N-acetylmuramoyl-L-alanyl-D- glutamate--meso-lanthionine ligase YP_003164947.1 PFAM: antibiotic biosynthesis monooxygenase; KEGG: cbe:Cbei_4497 antibiotic biosynthesis monooxygenase YP_003164948.1 PFAM: glycosyl transferase family 9; KEGG: fnu:FN0546 lipopolysaccharide core biosynthesis protein RfaQ YP_003164949.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_003164950.1 TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: haloacid dehalogenase type 3; haloacid dehalogenase; sucrose-6F-phosphate phosphohydrolase; KEGG: aha:AHA_0035 Cof family hydrolase YP_003164951.1 TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: haloacid dehalogenase type 3; haloacid dehalogenase; sucrose-6F-phosphate phosphohydrolase; KEGG: msu:MS2225 Cof protein YP_003164952.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: cno:NT01CX_1866 chemotaxis protein CheY YP_003164953.1 TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: haloacid dehalogenase type 3; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase; KEGG: kpn:KPN_04322 sugar phosphatase YP_003164954.1 PFAM: phosphoenolpyruvate carboxylase; KEGG: spw:SPCG_1212 phosphoenolpyruvate carboxylase YP_003164955.1 KEGG: fnu:FN1581 DNA mismatch repair protein MutS; TIGRFAM: MutS2 family protein; PFAM: Smr protein/MutS2; DNA mismatch repair protein MutS domain protein; SMART: DNA mismatch repair protein MutS domain protein; Smr protein/MutS2; MutS III domain protein YP_003164956.1 KEGG: afl:Aflv_2015 predicted ATPase YP_003164957.1 KEGG: cju:C8J_1450 RloB YP_003164958.1 KEGG: fnu:FN1579 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia ; Cysteinyl-tRNA synthetase class Ia DALR; tRNA synthetase class I (M) YP_003164959.1 KEGG: fnu:FN0711 phosphopantothenate--cysteine ligase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein YP_003164960.1 KEGG: prw:PsycPRwf_2288 homoserine kinase YP_003164962.1 PFAM: peptidase M23; KEGG: fjo:Fjoh_2261 peptidase M23B YP_003164963.1 PFAM: protein of unknown function DUF1311; KEGG: fnu:FN0389 hypothetical protein YP_003164964.1 TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; KEGG: fnu:FN0254 hypothetical protein YP_003164969.1 PFAM: protein of unknown function DUF1304; KEGG: lmf:LMOf2365_0547 hypothetical protein YP_003164970.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: fnu:FN1297 methionine aminopeptidase YP_003164971.1 KEGG: fnu:FN1298 adenylate kinase; TIGRFAM: adenylate kinase; PFAM: adenylate kinase YP_003164972.1 TIGRFAM: peptide methionine sulfoxide reductase; PFAM: methionine sulfoxide reductase A; KEGG: ccv:CCV52592_1839 peptide methionine sulfoxide reductase MsrA/MsrB YP_003164973.1 PFAM: aminotransferase class I and II; KEGG: cbh:CLC_1908 aminotransferase, classes I and II YP_003164974.1 PFAM: regulatory protein TetR; KEGG: eli:ELI_11015 TetR family transcriptional regulator protein YP_003164977.1 PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: fnu:FN1011 MgpA protein YP_003164978.1 PFAM: sporulation domain protein; KEGG: nucleosomal binding protein 1 YP_003164979.1 PFAM: purine or other phosphorylase family 1; KEGG: fnu:FN1015 5'-methylthioadenosine nucleosidase YP_003164980.1 KEGG: fnu:FN1825 hypothetical protein YP_003164981.1 KEGG: gfo:GFO_1692 phosphomannose isomerase type I; TIGRFAM: mannose-6-phosphate isomerase, class I; PFAM: mannose-6-phosphate isomerase type I YP_003164983.1 catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate YP_003164984.1 KEGG: vco:VC0395_A0515 N-acetylglucosamine-6- phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase YP_003164985.1 PFAM: phosphoglucose isomerase (PGI); KEGG: bld:BLi03314 glucose-6-phosphate isomerase YP_003164986.1 catalyzes the removal of amino acids from the N termini of peptides YP_003164987.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: sru:SRU_0362 glycosy hydrolase family protein YP_003164988.1 TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; KEGG: fnu:FN0909 DNA repair protein RadC YP_003164989.1 PFAM: PSP1 domain protein; KEGG: fnu:FN0908 tpl protein YP_003164990.1 KEGG: lbr:LVIS_1494 transposase YP_003164991.1 KEGG: fnu:FN1698 dTDP-4-dehydrorhamnose reductase; TIGRFAM: dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; NAD- dependent epimerase/dehydratase YP_003164992.1 PFAM: glycoside hydrolase family 16; KEGG: bcl:ABC0703 endo-beta-1,3-glucanase YP_003164993.1 PFAM: glycosyl transferase family 2; KEGG: tbd:Tbd_1875 glycosyl transferase, group 2 family protein YP_003164994.1 KEGG: lsl:LSL_0987 glycosyltransferase YP_003164995.1 KEGG: psb:Psyr_0612 nucleotidyl transferase YP_003164996.1 KEGG: bfs:BF3693 hypothetical protein YP_003164997.1 KEGG: cjd:JJD26997_1806 nucleotidyltransferase YP_003164998.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cjd:JJD26997_1807 HAD superfamily hydrolase YP_003164999.1 KEGG: cjd:JJD26997_1808 hypothetical protein YP_003165000.1 PFAM: glycosyl transferase family 2; KEGG: pmc:P9515_14031 hypothetical protein YP_003165001.1 PFAM: GtrA family protein; KEGG: bpu:BPUM_3471 GtrA family integral membrane protein YP_003165002.1 KEGG: oan:Oant_0713 hypothetical protein YP_003165003.1 KEGG: fnu:FN1992 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase YP_003165004.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bmu:Bmul_2510 hypothetical protein YP_003165005.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cbt:CLH_2998 teichoic acids export ATP- binding protein TagH YP_003165006.1 PFAM: ABC transporter; KEGG: cbt:CLH_2999 ABC transporter integral membrane subunit YP_003165007.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: nucleotidyl transferase; KEGG: msi:Msm_1307 dTDP-glucose pyrophosphorylase, RfbA YP_003165008.1 TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: dvl:Dvul_2655 sugar transferase YP_003165010.1 KEGG: tte:TTE2708 hypothetical protein YP_003165011.1 KEGG: dau:Daud_2239 hypothetical protein YP_003165012.1 PFAM: glycosyl transferase family 2; KEGG: mtp:Mthe_0965 glycosyl transferase YP_003165013.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_003165014.1 TIGRFAM: thiamine pyrophosphokinase; PFAM: Thiamin pyrophosphokinase catalytic region; KEGG: fnu:FN0890 thiamin pyrophosphokinase YP_003165015.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: histidine kinase A domain protein; ATP- binding region ATPase domain protein; KEGG: cdf:CD0669 two-component sensor histidine kinase YP_003165016.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: cdf:CD0668 two-component response regulator YP_003165018.1 PFAM: HRDC domain protein; SMART: HRDC domain protein; KEGG: paa:Paes_2389 HRDC domain protein YP_003165019.1 KEGG: swo:Swol_1843 hypothetical protein YP_003165020.1 KEGG: fnu:FN2122 phenylalanyl-tRNA synthetase beta chain; TIGRFAM: phenylalanyl-tRNA synthetase subunit beta YP_003165021.1 KEGG: hypothetical protein YP_003165022.1 PFAM: protein of unknown function DUF1963; KEGG: btk:BT9727_2468 hypothetical protein YP_003165023.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sha:SH0117 hypothetical protein YP_003165024.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: fnu:FN0211 plasmid addiction system poison protein YP_003165026.1 TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; KEGG: fnu:FN2123 phenylalanyl-tRNA synthetase alpha chain YP_003165027.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: cth:Cthe_0245 ArsR family transcriptional regulator YP_003165028.1 PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: nme:NMB1476 glutamate dehydrogenase, NAD- specific YP_003165029.1 KEGG: smu:SMU.772 glucan-binding protein D; BglB-like protein YP_003165030.1 KEGG: bca:BCE_A0067 IS605 family transposase OrfB; TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB YP_003165031.1 PFAM: protein of unknown function DUF541; KEGG: ckl:CKL_2421 hypothetical protein YP_003165032.1 PFAM: protein of unknown function DUF541; KEGG: csc:Csac_1726 hypothetical protein YP_003165034.1 PFAM: PASTA domain containing protein; SMART: PASTA domain containing protein; KEGG: tpd:Teth39_1313 serine/threonine protein kinase with PASTA sensor(s) YP_003165035.1 TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: fnu:FN0679 GTPase YP_003165036.1 KEGG: fnu:FN0680 ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase YP_003165037.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: fnu:FN0681 MarR family transcriptional regulator YP_003165038.1 PFAM: Abi family protein; KEGG: llm:llmg_0852 hypothetical protein YP_003165039.1 PFAM: Fibronectin-binding A domain protein; protein of unknown function DUF814; KEGG: fnu:FN0682 fibronectin-binding protein-like protein A YP_003165040.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; KEGG: fnu:FN1794 phosphocarrier protein HPr YP_003165041.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_003165042.1 KEGG: cch:Cag_0728 fructose-bisphosphate aldolase; TIGRFAM: fructose-1,6-bisphosphate aldolase, class II; ketose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II YP_003165043.1 PFAM: glycoside hydrolase family 25; SMART: glycoside hydrolase family 25; KEGG: lil:LA2997 glycosyl hydrolase/lysozyme YP_003165044.1 KEGG: sul:SYO3AOP1_1195 seryl-tRNA synthetase; TIGRFAM: seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl- tRNA synthetase, class IIa-like YP_003165045.1 KEGG: fnu:FN1131 hypothetical protein YP_003165046.1 KEGG: fnu:FN1130 tetraacyldisaccharide 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase YP_003165047.1 PFAM: protein of unknown function DUF199; KEGG: fnu:FN0706 cytoplasmic protein YP_003165048.1 KEGG: chu:CHU_1410 hypothetical protein YP_003165049.1 KEGG: lpc:LPC_2103 hypothetical protein YP_003165050.1 TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; KEGG: fnu:FN1342 holo-[acyl-carrier protein] synthase YP_003165051.1 KEGG: cpf:CPF_0598 dTDP-4-dehydrorhamnose 3,5- epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related YP_003165053.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; KEGG: fnu:FN1667 dTDP-glucose 4,6-dehydratase YP_003165054.1 KEGG: pmu:PM1543 hypothetical protein YP_003165055.1 PFAM: extracellular ligand-binding receptor; KEGG: fnu:FN1432 leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein YP_003165056.1 PFAM: extracellular ligand-binding receptor; KEGG: fnu:FN1432 leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein YP_003165057.1 PFAM: inner-membrane translocator; KEGG: cpy:Cphy_3535 inner-membrane translocator YP_003165058.1 PFAM: inner-membrane translocator; KEGG: fnu:FN1430 branched chain amino acid ABC transporter permease YP_003165059.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cpy:Cphy_3533 ABC transporter YP_003165060.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: hmo:HM1_0494 branched chain amino acid ABC transporter ATP-binding protein YP_003165061.1 PFAM: protein of unknown function DUF1311; KEGG: fnu:FN0389 hypothetical protein YP_003165063.1 KEGG: fma:FMG_1569 hypothetical protein YP_003165064.1 TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: negative regulator of class I heat shock protein; KEGG: fnu:FN0113 heat-inducible transcription repressor HrcA YP_003165065.1 PFAM: GrpE protein; KEGG: fnu:FN0114 GrpE protein YP_003165066.1 KEGG: fnu:FN0116 chaperone protein DnaK; TIGRFAM: chaperone protein DnaK; PFAM: heat shock protein 70 YP_003165067.1 KEGG: hypothetical protein YP_003165068.1 PFAM: aldose 1-epimerase; KEGG: cpf:CPF_0279 aldose 1-epimerase YP_003165070.1 KEGG: fnu:FN0118 chaperone protein DnaJ; TIGRFAM: chaperone protein DnaJ; PFAM: chaperone DnaJ domain protein; DnaJ central domain protein; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein YP_003165071.1 KEGG: aoe:Clos_1404 hypothetical protein YP_003165072.1 KEGG: fnu:FN1611 competence protein YP_003165073.1 PFAM: alpha/beta hydrolase fold-3 domain protein; KEGG: lbr:LVIS_0232 esterase/lipase YP_003165074.1 Responsible for removing an oxidatively damaged form of guanine (7,8-dihydro-8-oxoguanine = 7-oxoG) from DNA. Also nicks DNA at apurinic/apyrimidinic sites YP_003165075.1 TIGRFAM: outer membrane autotransporter barrel domain protein; autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta- domain protein; peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: har:HEAR0231 peptidase S8 YP_003165076.1 SMART: Sel1 domain protein repeat-containing protein; KEGG: cdf:CD2123 multiprotein-complex assembly protein YP_003165077.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; subclass 1A is a dimer formed by two identical PyrD subunits each containing an FMN group YP_003165078.1 PFAM: silent information regulator protein Sir2; KEGG: sgo:SGO_1258 NAD-dependent deacetylase YP_003165079.1 PFAM: protein-tyrosine phosphatase, low molecular weight; SMART: protein-tyrosine phosphatase, low molecular weight; KEGG: cpy:Cphy_1040 protein tyrosine phosphatase YP_003165080.1 PFAM: glycoside hydrolase family 1; KEGG: smu:SMU.985 beta-glucosidase YP_003165081.1 TIGRFAM: PTS system, beta-glucoside-specific IIABC subunit; PTS system, glucose subfamily, IIsubunit alpha; PFAM: sugar-specific permease EIIA 1 domain; phosphotransferase system EIIC; phosphotransferase system PTS EIIB protein; KEGG: cac:CAC1407 PTS system, beta-glucosides- specific IIABC component YP_003165082.1 KEGG: fnu:FN1156 primosomal protein N'; TIGRFAM: primosomal protein N'; PFAM: type III restriction protein res subunit; DEAD/DEAH box helicase; helicase; SMART: DEAD-like helicases ; helicase YP_003165083.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: fnu:FN1155 cell division protein FtsI YP_003165084.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_003165085.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_003165086.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; KEGG: fnu:FN0755 glutamyl-tRNA(Gln) amidotransferase subunit C YP_003165087.1 PFAM: RNA methylase; methyltransferase type 11; KEGG: chy:CHY_2212 DNA methylase YP_003165088.1 KEGG: mpe:MYPE1230 adenine-specific DNA methyltransferase; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase YP_003165089.1 KEGG: cbl:CLK_0117 hypothetical protein YP_003165091.1 KEGG: hypothetical protein YP_003165092.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); KEGG: tte:TTE2448 phosphoserine phosphatase YP_003165093.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; SMART: RNA-binding S4 domain protein; KEGG: fnu:FN0756 ribosomal large subunit pseudouridine synthase B YP_003165094.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: fnu:FN0757 cytoplasmic protein YP_003165095.1 PFAM: cell shape determining protein MreB/Mrl; SMART: actin/actin family protein; KEGG: fnu:FN0758 rod shape-determining protein MreB YP_003165096.1 PFAM: cell divisionFtsK/SpoIIIE; SMART: ATPase AAA; KEGG: cpf:CPF_1930 DNA translocase FtsK YP_003165097.1 KEGG: mta:Moth_1038 undecaprenyl pyrophosphate synthetase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase YP_003165098.1 PFAM: phosphatidate cytidylyltransferase; KEGG: fnu:FN1325 phosphatidate cytidylyltransferase YP_003165099.1 KEGG: bha:BH3228 tyrosyl-tRNA synthetase; TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; RNA- binding S4 domain protein YP_003165100.1 KEGG: bcc:BCc_282 hypothetical protein YP_003165101.1 PFAM: glycosyl transferase family 9; KEGG: fnu:FN0544 ADP-heptose:LPS heptosyltransferase II YP_003165102.1 PFAM: O-antigen polymerase; KEGG: cbl:CLK_2492 exopolysaccharide biosynthesis family protein YP_003165103.1 PFAM: Capsular polysaccharide synthesis; KEGG: prw:PsycPRwf_0984 capsular polysaccharide synthesis YP_003165104.1 PFAM: glycosyl transferase group 1; KEGG: pmu:PM1138 hypothetical protein YP_003165105.1 KEGG: apa:APP7_1037 hypothetical protein YP_003165106.1 PFAM: glycosyl transferase family 9; KEGG: apl:APL_0979 D-glycero-D-manno- heptosyl transferase YP_003165107.1 PFAM: glycosyl transferase family 2; KEGG: hhe:HH0773 hypothetical protein YP_003165108.1 PFAM: glycosyl transferase family 2; KEGG: swd:Swoo_0073 glycosyl transferase YP_003165109.1 PFAM: polysaccharide deacetylase; KEGG: fnu:FN0541 cytoplasmic protein YP_003165110.1 PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: fnu:FN0598 phospholipid-lipopolysaccharide ABC transporter YP_003165111.1 KEGG: hypothetical protein YP_003165112.1 KEGG: dth:DICTH_0964 RnfD/NqrB YP_003165113.1 KEGG: fnu:FN0019 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: DEAD/DEAH box helicase; transcription factor CarD; TRCF domain protein; helicase; type III restriction protein res subunit; SMART: DEAD-like helicases ; helicase YP_003165114.1 KEGG: npu:Npun_F3411 hypothetical protein YP_003165115.1 KEGG: wpi:WP1376 magnesium transporter YP_003165116.1 TIGRFAM: conserved hypothetical protein; KEGG: tpa:TP0381 hypothetical protein YP_003165117.1 PFAM: SpoVG family protein; KEGG: fnu:FN0022 hypothetical protein YP_003165118.1 PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: ckl:CKL_0158 hypothetical protein YP_003165119.1 KEGG: tde:TDE1356 lipoprotein YP_003165120.1 PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: fnu:FN0576 D-amino acid dehydrogenase large subunit YP_003165122.1 Converts oxaloacetate to phosphoenolpyruvate using ATP as an energy source YP_003165123.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP YP_003165124.1 TIGRFAM: histidinol-phosphate phosphatase; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: polynucleotide kinase 3 phosphatase central region; KEGG: sul:SYO3AOP1_0223 D,D-heptose 1,7- bisphosphate phosphatase YP_003165125.1 PFAM: extracellular solute-binding protein family 5; KEGG: tte:TTE0611 ABC-type dipeptide/oligopeptide/nickel transporters, periplasmic components YP_003165126.1 PFAM: extracellular solute-binding protein family 5; KEGG: tte:TTE0611 ABC-type dipeptide/oligopeptide/nickel transporters, periplasmic components YP_003165127.1 PFAM: extracellular solute-binding protein family 5; KEGG: tte:TTE0611 ABC-type dipeptide/oligopeptide/nickel transporters, periplasmic components YP_003165128.1 PFAM: extracellular solute-binding protein family 5; KEGG: tte:TTE1552 ABC-type dipeptide/oligopeptide/nickel transporters, periplasmic components YP_003165129.1 PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; KEGG: gtn:GTNG_0695 oligopeptide ABC transporter ATP-binding protein YP_003165130.1 KEGG: bld:BLi01235 OppD; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA YP_003165131.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: cno:NT01CX_1742 ABC-type dipeptide/oligopeptide/nickel transporters, permeases YP_003165132.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: csc:Csac_1028 nickel-transporting ATPase YP_003165133.1 KEGG: min:Minf_0153 hypothetical protein YP_003165134.1 KEGG: apl:APL_1659 hypothetical protein YP_003165135.1 TIGRFAM: PTS system, mannose/fructose/sorbose family, IID subunit; PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: asu:Asuc_0288 PTS system mannose/fructose/sorbose family IID subunit YP_003165136.1 TIGRFAM: PTS system, mannose/fructose/sorbose family, IIC subunit; PFAM: phosphotransferase system PTS sorbose- specific IIC subunit; KEGG: asu:Asuc_0287 PTS system mannose/fructose/sorbose family IIC subunit YP_003165137.1 KEGG: apj:APJL_1695 phosphotransferase system,mannose/fructose/N-acetylgalactosamine-specific component IIB; TIGRFAM: PTS system, mannose/fructose/sorbose family, IIsubunit beta; PFAM: PTS system sorbose subfamily IIB component YP_003165138.1 TIGRFAM: PTS system, mannose/fructose/sorbose family, IIA subunit; PFAM: PTS system fructose subfamily IIA component; KEGG: msu:MS2379 hypothetical protein YP_003165139.1 TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: fnu:FN2124 hypothetical protein YP_003165140.1 KEGG: hypothetical protein, conserved YP_003165141.1 KEGG: fnu:FN2125 DNA gyrase subunit A; TIGRFAM: DNA gyrase subunit alpha; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; SMART: DNA gyrase/topoisomerase IV subunit A YP_003165142.1 KEGG: fnu:FN2126 DNA gyrase subunit B; TIGRFAM: DNA gyrase subunit beta; PFAM: DNA topoisomerase type IIsubunit alpha B region 2 domain protein; DNA gyrase subunit B domain protein; TOPRIM domain protein; ATP-binding region ATPase domain protein; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein YP_003165143.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_003165144.1 PFAM: single-stranded nucleic acid binding R3H domain protein; SMART: single-stranded nucleic acid binding R3H domain protein; KEGG: fnu:FN0005 Jag protein YP_003165145.1 PFAM: hypothetical protein; KEGG: fnu:FN0004 inner membrane protein YP_003165146.1 PFAM: protein of unknown function DUF37; KEGG: fnu:FN0003 alpha-hemolysin YP_003165147.1 TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: fnu:FN0002 ribonuclease P protein component YP_003165148.1 TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; KEGG: cdf:CD3680 50S ribosomal protein L34