-- dump date 20140619_125819 -- class Genbank::CDS -- table cds_note -- id note YP_002794006.1 catalyzes the formation of oxaloacetate from L-aspartate YP_002794009.1 ATP-dependent protease hslV; heat shock protein involved in degradation of misfolded proteins YP_002794010.1 ATP-dependent hsl protease ATP-binding subunit hslU; heat shock protein involved in degradation of misfolded proteins YP_002794013.1 Myo-inositol-1(Or 4)-monophosphatase YP_002794014.1 Aspartate carbamoyltransferase regulatory chain; involved in the allosteric regulation of aspartate carbamoyltransferase YP_002794015.1 Aspartate carbamoyltransferase catalytic subunit YP_002794016.1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_002794018.1 Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine YP_002794019.1 Lipopolysaccharide heptosyltransferase I YP_002794024.1 Glutamate-1-semialdehyde 2,1-aminomutase; Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway YP_002794026.1 Diaminopimelate decarboxylase YP_002794028.1 Protein cyaY YP_002794030.1 Dimethyladenosine transferase (EC 2.1.1.-) (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase); catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_002794032.1 ABC transporter, glutamate receptor YP_002794033.1 Glutamate/aspartate ABC transporter, permease protein YP_002794035.1 ABC superfamily (Glutamate/aspartate transporter), ATP-binding protein YP_002794037.1 PilT YP_002794039.1 Pyrroline-5-carboxylate reductase YP_002794042.1 DnaK suppressor protein YP_002794043.1 Phospho-2-dehydro-3-deoxyheptonate aldolase; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive YP_002794044.1 Molybdopterin-guanine dinucleotide biosynthesis protein A YP_002794045.1 Molybdopterin converting factor subunit 2 YP_002794046.1 Molybdopterin-converting factor subunit 1 YP_002794048.1 Fructose-bisphosphate aldolase; class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis YP_002794050.1 Phosphoglycerate kinase; Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_002794052.1 Transketolase 1; catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_002794054.1 2,4-dienoyl-CoA reductase FadH1 YP_002794057.1 Sua5/YciO/YrdC family protein YP_002794058.1 TolQ-related transport transmembrane protein YP_002794060.1 Polyamine ABC transporter system, substrate-binding protein YP_002794061.1 Glutamate 5-kinase; catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_002794062.1 Molybdopterin biosynthesis MoeB protein YP_002794064.1 Sensor protein YP_002794066.1 sun-like protein YP_002794067.1 Heat shock protein YP_002794070.1 DNA helicase II YP_002794072.1 16S rRNA pseudouridylate 516 synthase YP_002794074.1 Protein porphyrin biosynthesis YP_002794075.1 Uroporphyrin-III C-methyltransferase YP_002794076.1 Uroporphyrinogen-III synthase; catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis YP_002794080.1 Protein crcB homolog YP_002794082.1 Ribonuclease G YP_002794091.1 Holliday junction ATP-dependent DNA helicase ruvB; promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_002794099.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_002794103.1 Biotin synthase YP_002794104.1 Competence protein F YP_002794106.1 Rare lipoprotein A YP_002794107.1 hydrolase YP_002794108.1 Serine O-acetyltransferase YP_002794112.1 5-methyltetrahydrofolate-homocysteine S-methyltransferase; one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity YP_002794122.1 DNA-directed DNA polymerase, delta subunit; required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA YP_002794123.1 Rare lipoprotein B YP_002794124.1 Leucyl-tRNA synthetase; leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_002794126.1 potassium transport system protein kup 2 YP_002794128.1 Anaerobic c4-dicarboxylate antiporter, DcuC family YP_002794129.1 Anhydro-N-acetylmuramyl-tripeptide amidase YP_002794133.1 2-isopropylmalate synthase YP_002794136.1 Dihydrolipoamide dehydrogenase YP_002794137.1 Dihydrolipoamide S-acetyltransferase YP_002794138.1 Pyruvate dehydrogenase; E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC YP_002794147.1 transcription regulator protein similar to Rs05230 YP_002794150.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA YP_002794151.1 Similar to alkylphosphonate uptake protein PhnA YP_002794156.1 Catalyzes the deamination of guanine YP_002794161.1 Acetolactate synthase isozyme III, large subunit YP_002794162.1 Acetolactate synthase isozyme III, small subunit; with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_002794163.1 Ketol-acid reductoisomerase; catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_002794168.1 Phosphatidylserine decarboxylase proenzyme (EC 4.1.1.65) [Contains: Phosphatidylserine decarboxylase alpha chain; catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine YP_002794170.1 Phosphate regulon transcriptional regulatory protein phoB YP_002794171.1 Sensor protein YP_002794172.1 Transaldolase; catalyzes the reversible formation of D-erythrose 4-phosphate and D-fructose 6-phosphate from sedoheptulose 7-phosphate and D-glyceraldehyde 3-phosphate YP_002794173.1 Dethiobiotin synthase YP_002794174.1 Cytochrome c oxidase subunit 2 YP_002794175.1 Cytochrome-c oxidase, subunit I YP_002794176.1 Cytochrome c oxidase assembly protein CtaG/Cox11 YP_002794182.1 cytochrome aa3 oxidase assembly protein YP_002794184.1 Protoheme IX farnesyltransferase YP_002794185.1 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems YP_002794187.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ YP_002794189.1 Histidinol dehydrogenase; catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_002794190.1 Histidinol-phosphate aminotransferase; catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_002794191.1 Imidazoleglycerol-phosphate dehydratase; catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_002794192.1 Imidazole glycerol phosphate synthase subunit hisH YP_002794193.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_002794195.1 Imidazole glycerol phosphate synthase subunit hisF; catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_002794196.1 Phosphoribosyl-AMP cyclohydrolase; PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers YP_002794197.1 Phosphoribosyl-ATP pyrophosphatase; catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis YP_002794199.1 Sec-independent protein secretion pathway components YP_002794200.1 Sec-independent protein translocase protein tatB homolog YP_002794201.1 Sec-independent protein translocase protein TatC YP_002794203.1 similar to BRA0697 YP_002794207.1 two-component response regulator; response regulator in two-component regulatory system with RstB YP_002794214.1 long-chain-fatty-acid--CoA ligase YP_002794215.1 ABC-type branched-chain amino acid transport systems, ATPase component YP_002794216.1 Branched-chain amino acid ABC-type transport system, permease components YP_002794218.1 branched-chain amino acid transport system substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein YP_002794219.1 ABC transporter ATP-binding protein YP_002794221.1 Methylmalonate-semialdehyde dehydrogenase YP_002794222.1 Acyl-CoA dehydrogenase YP_002794223.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_002794224.1 Enoyl-CoA hydratase YP_002794227.1 Macrolide export ATP-binding/permease protein macB YP_002794230.1 Two component transcriptional regulator, winged helix family YP_002794231.1 COG0642: Signal transduction histidine kinase YP_002794235.1 RNA polymerase sigma-32 factor; binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters YP_002794236.1 Cell division protein FtsX, ABC transporter integral membrane protein YP_002794237.1 Cell division ATP-binding protein ftsE, ABC transporter ATP-binding protein YP_002794238.1 Cell division protein FtsY YP_002794242.1 Ferredoxin [4Fe-4S YP_002794243.1 tufB, tuf; EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_002794244.1 Preprotein translocase transmembrane,secE subunit; forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_002794245.1 Transcription antitermination protein NusG; Modulates Rho-dependent transcription termination YP_002794247.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_002794248.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_002794249.1 50S ribosomal protein L7/L12 YP_002794250.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_002794251.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_002794252.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_002794253.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_002794254.1 Elongation factor G; EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_002794255.1 tufB, tuf; EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_002794256.1 30S ribosomal protein S10 YP_002794257.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_002794258.1 50S ribosomal protein L4 YP_002794259.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_002794260.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_002794261.1 30S ribosomal protein S19 YP_002794262.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_002794263.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_002794264.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_002794265.1 one of the stabilizing components for the large ribosomal subunit YP_002794266.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_002794267.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_002794268.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_002794269.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_002794270.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif YP_002794271.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_002794272.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_002794273.1 binds 5S rRNA along with protein L5 and L25 YP_002794274.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_002794275.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_002794276.1 late assembly protein YP_002794277.1 Preprotein translocase secY subunit; forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_002794278.1 Translation initiation factor IF-1 2 YP_002794279.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif YP_002794281.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_002794282.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_002794283.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_002794284.1 is a component of the macrolide binding site in the peptidyl transferase center YP_002794286.1 Involved in pteridine salvage and antifolate resistance YP_002794291.1 Mg(2) transport ATPase protein C YP_002794292.1 Apolipoprotein N-acyltransferase YP_002794293.1 Magnesium and cobalt efflux protein corC YP_002794296.1 2-methylthioadenine synthetase; catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_002794298.1 Arginine/ornithine antiporter YP_002794300.1 Anaerobic C4-dicarboxylate transporter YP_002794307.1 Xanthine phosphoribosyltransferase YP_002794313.1 FkbP-type peptidyl-prolyl cis-trans isomerase YP_002794314.1 Peptidyl-tRNA hydrolase YP_002794315.1 50S ribosomal protein L25 YP_002794316.1 Ribose-phosphate pyrophosphokinase; catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_002794317.1 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148) (CMK) (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase); An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis YP_002794318.1 Outer-membrane lipoprotein lolB precursor; Incorporates lipoproteins in the outer membrane after they are released by the LolA protein YP_002794320.1 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) (Fapy-DNA glycosylase) (DNA-(apurinic or apyrimidinic site) lyase mutM) YP_002794321.1 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical; hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP YP_002794322.1 ATP-dependent DNA helicase YP_002794326.1 similar to CG12567-PA, isoform A YP_002794327.1 4-hydroxybenzoate octaprenyltransferase YP_002794328.1 chorismate--pyruvate lyase YP_002794332.1 Sensor protein YP_002794333.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain YP_002794337.1 Binding-protein-dependent transport systems inner membrane component precursor YP_002794338.1 ABC transporter, periplasmic substrate-binding protein YP_002794340.1 Binding-protein-dependent transport systems inner membrane component precursor YP_002794347.1 Myo-inositol-1(Or 4)-monophosphatase YP_002794349.1 GTP-binding protein YchF; translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_002794354.1 Alanine racemase YP_002794355.1 Oxygen-independent coproporphyrinogen III oxidase; catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_002794357.1 RNA polymerase sigma factor YP_002794358.1 lipoprotein nlpD YP_002794359.1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_002794360.1 5'-nucleotidase surE; catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_002794361.1 Quinolinate synthetase; 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_002794364.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_002794365.1 16S rRNA-processing protein rimM; Essential for efficient processing of 16S rRNA YP_002794366.1 tRNA (guanine-N(1)-)-methyltransferase YP_002794367.1 50S ribosomal protein L19 YP_002794369.1 ATP-dependent Clp protease, ATP-binding subunit YP_002794370.1 ATP-dependent Clp protease adapter protein clpS YP_002794371.1 RNA chaperone, transcription antiterminator, affects expression of rpoS and uspA; similar to RS02390 YP_002794372.1 Isocitrate dehydrogenase YP_002794374.1 Bifunctional isocitrate dehydrogenase kinase/phosphatase protein; catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol YP_002794377.1 DNA mismatch repair protein mutS; This protein performs the mismatch recognition step during the DNA repair process YP_002794398.1 Bacteriophage gpE similar to Rs03484 YP_002794400.1 Major tail seath protein gpFI YP_002794404.1 ORF-191A YP_002794411.1 Tail completion protein gpS similar to Rs03495 YP_002794412.1 Tail completion protein-like protein similar to Rs03499 YP_002794419.1 Head completion protein YP_002794421.1 Phage major capsid protein, P2 family similar to Xoo1607 YP_002794429.1 tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33) (tRNA(m7G46)- methyltransferase); tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine YP_002794431.1 NAD(P)H-flavin reductase; catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose YP_002794435.1 Amino acid permease-associated region YP_002794436.1 Adenine phosphoribosyltransferase; catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_002794437.1 Chaperone protein clpB YP_002794440.1 Flagellar hook-associated protein 3 YP_002794441.1 FLAGELLAR HOOK-ASSOCIATED PROTEIN 1 YP_002794442.1 Flagellar protein flgJ YP_002794443.1 Flagellar P-ring protein 2 precursor YP_002794444.1 Flagellar L-ring protein 2 precursor YP_002794445.1 Flagellar basal-body rod protein FlgG; similar to RS00748 YP_002794446.1 Flagellar basal-body rod protein flgF YP_002794448.1 Flagellar hook capping protein YP_002794449.1 Flagellar basal-body rod protein flgC YP_002794450.1 Flagellar basal-body rod protein flgB YP_002794453.1 Heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase:Heavy metal translocating P-type ATPase YP_002794458.1 binds to flagellin and appears to stabilize flagellin during flagella assembly YP_002794460.1 Guanylate kinase YP_002794461.1 DNA-directed RNA polymerase subunit omega YP_002794462.1 Guanosine-3',5'-bis(Diphosphate) 3'-diphosphatase YP_002794463.1 Thiamin biosynthesis ThiS YP_002794464.1 Thiazole biosynthesis protein thiG; functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate YP_002794465.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_002794467.1 DNA primase YP_002794468.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria YP_002794472.1 Transcriptional regulator, LysR family YP_002794473.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine YP_002794478.1 ring-cleaving dioxygenase similar to Ypch00136 YP_002794484.1 Methyl-accepting chemotaxis protein III YP_002794486.1 Chaperone protein htpG; molecular chaperone YP_002794500.1 Biopolymer transport exbD transmembrane protein YP_002794501.1 exbB-like biopolymer transport YP_002794502.1 gram-negative bacterial tonB protein YP_002794503.1 Uracil permease YP_002794504.1 Uracil phosphoribosyltransferase; Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_002794510.1 Phosphoribosylformylglycinamidine cyclo-ligase; catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_002794515.1 ubiB, aarF, yigQ, yigR; an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions YP_002794516.1 Molybdenum cofactor biosynthesis protein A YP_002794523.1 Phosphate import ATP-binding protein pstB; ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_002794524.1 ABC-type phosphate transport system, permease component YP_002794525.1 Phosphate ABC transporter, permease protein YP_002794526.1 ABC transporter phosphate-binding protein YP_002794527.1 Triosephosphate isomerase; Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_002794528.1 Protein-export integral membrane protein YP_002794530.1 NADH dehydrogenase subunit B YP_002794532.1 Catalyzes the transfer of electrons from NADH to quinone YP_002794533.1 NADH-ubiquinone oxidoreductase, chain E; Catalyzes the transfer of electrons from NADH to quinone YP_002794534.1 NADH-ubiquinone oxidoreductase, chain F YP_002794535.1 NADH-quinone oxidoreductase; Catalyzes the transfer of electrons from NADH to ubiquinone YP_002794536.1 NADH-quinone oxidoreductase subunit H YP_002794537.1 NADH-quinone oxidoreductase subunit I; Catalyzes the transfer of electrons from NADH to quinone YP_002794538.1 NADH-ubiquinone oxidoreductase, chain J YP_002794539.1 NADH-ubiquinone oxidoreductase, chain K; Catalyzes the transfer of electrons from NADH to quinone YP_002794540.1 NADH-ubiquinone oxidoreductase, chain L; Catalyzes the transfer of electrons from NADH to ubiquinone YP_002794541.1 NADH-ubiquinone oxidoreductase, chain M; Catalyzes the transfer of electrons from NADH to quinone YP_002794542.1 NADH-ubiquinone oxidoreductase, chain N; Catalyzes the transfer of electrons from NADH to quinone YP_002794543.1 Methylenetetrahydrofolate reductase YP_002794545.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_002794546.1 required for 70S ribosome assembly YP_002794547.1 CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_002794548.1 2-dehydro-3-deoxyphosphooctonate aldolase YP_002794549.1 Enolase; enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_002794550.1 Cell division protein ftsB homolog YP_002794555.1 Diguanylate phosphodiesterase YP_002794557.1 Chemotaxis protein CheZ YP_002794558.1 Chemotaxis regulator protein CheY YP_002794559.1 Chemotaxis protein CheV YP_002794560.1 Chemotaxis protein CheV YP_002794562.1 methyl-accepting chemotaxis protein YP_002794563.1 Chemotaxis protein cheY YP_002794564.1 Chemotaxis protein CheA YP_002794567.1 Glutamate methyltransferase, chemotactic response regulator YP_002794568.1 Chemotaxis response regulator protein-glutamate methylesterase YP_002794569.1 chemoreceptor glutamine deamidase cheD YP_002794571.1 Acyl carrier protein; carries the fatty acid chain in fatty acid biosynthesis YP_002794572.1 3-oxoacyl-(Acyl-carrier-protein) reductase YP_002794573.1 Malonyl CoA-acyl carrier protein transacylase YP_002794574.1 3-oxoacyl-[acyl-carrier-protein] synthase 3; FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_002794575.1 Fatty acid/phospholipid synthesis protein plsX YP_002794576.1 50S ribosomal protein L32 YP_002794578.1 Maf-like protein CV_3420; Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell YP_002794581.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_002794582.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA YP_002794583.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA YP_002794586.1 flagella synthesis protein FlgN; K02399 flagella synthesis protein FlgN YP_002794587.1 Negative regulator of flagellin synthesis YP_002794588.1 flagella basal body P-ring formation protein flgA YP_002794589.1 Threonine synthase; catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_002794591.1 Homoserine dehydrogenase; catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_002794597.1 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE; Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone YP_002794599.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_002794600.1 3-dehydroquinate dehydratase YP_002794601.1 Acetyl-CoA carboxylase biotin carboxyl carrier protein; composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_002794602.1 Biotin carboxylase protein; an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_002794603.1 Ribosomal protein L11 methyltransferase; methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype YP_002794607.1 membrane protein YP_002794608.1 Topoisomerase IV subunit B; decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_002794609.1 Tyrosyl-tRNA synthetase YP_002794610.1 Transcriptional regulator CysB YP_002794611.1 Phosphoadenylyl-sulfate reductase; catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite YP_002794612.1 Sulfite reductase hemoprotein, beta subunit YP_002794614.1 Outer membrane protein A YP_002794615.1 ribF, ribC; catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities YP_002794616.1 Isoleucyl-tRNA synthetase YP_002794617.1 Lipoprotein signal peptidase; lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_002794618.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_002794620.1 Aerotaxis receptor YP_002794621.1 Phosphoribosylglycinamide formyltransferase YP_002794624.1 Dihydroneopterin aldolase YP_002794629.1 ABC-type transport system, permease component YP_002794631.1 Transcription-repair coupling factor YP_002794641.1 Phosphopantetheine adenylyltransferase YP_002794643.1 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_002794644.1 this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu YP_002794646.1 Competence protein YP_002794651.1 Malate synthase A; Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle YP_002794657.1 Polyphosphate kinase YP_002794659.1 Histone deacetylase YP_002794661.1 10 kDa chaperonin; 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_002794662.1 60 kDa chaperonin 2 YP_002794665.1 Type 4 prepilin-like proteins leader peptide-processing enzyme [Includes: Leader peptidase (EC 3.4.23.43) (Prepilin peptidase) YP_002794666.1 Dephospho-CoA kinase YP_002794676.1 Adenosylhomocysteinase; catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_002794678.1 Carbon starvation protein YP_002794681.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway YP_002794684.1 Nucleoside diphosphate kinase; catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_002794687.1 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC 1.17.4.3) (1- hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase); catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_002794688.1 Histidyl-tRNA synthetase; catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_002794691.1 engA, yfgK, yphC YP_002794692.1 Protein hfq YP_002794694.1 GTP-binding protein hflX YP_002794696.1 HflC protein YP_002794697.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine YP_002794698.1 Adenylosuccinate synthetase 2 YP_002794699.1 Dihydrodipicolinate synthase YP_002794701.1 3-oxoacyl-(Acyl-carrier protein) reductase YP_002794703.1 3-isopropylmalate dehydratase large subunit YP_002794706.1 3-isopropylmalate dehydratase small subunit 2; catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D YP_002794708.1 Carboxylate-amine ligase CV_2904; ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity YP_002794710.1 Bacterioferritin comigratory protein YP_002794712.1 Elongation factor P YP_002794718.1 Cystathionine gamma-synthase YP_002794719.1 Coproporphyrinogen 3 oxidase, aerobic; catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis YP_002794720.1 Glutamate synthase, large subunit; catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate YP_002794721.1 Glutamate synthase, small subunit; glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate YP_002794722.1 Recombination associated protein RdgC; Required for efficient pilin antigenic variation YP_002794724.1 Ribonuclease HII; RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_002794728.1 Aerotaxis receptor Aer-2 YP_002794731.1 Serine hydroxymethyltransferase YP_002794734.1 Riboflavin-specific deaminase/reductase YP_002794746.1 Methionyl-tRNA synthetase; methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_002794748.1 Glycyl-tRNA synthetase alpha subunit; glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_002794750.1 Glycyl-tRNA synthetase, beta chain; glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_002794751.1 Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate YP_002794756.1 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase YP_002794757.1 Peptidoglycan N-acetylmuramoylhydrolase YP_002794760.1 COG3276: Selenocysteine-specific translation elongation factor YP_002794761.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis YP_002794776.1 lipoprotein similar to Rsp0674 YP_002794779.1 GMP synthase [glutamine-hydrolyzing]; contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_002794780.1 SsrA-binding protein YP_002794783.1 RNA polymerase sigma factor for flagellar operon YP_002794784.1 Flagellar synthesis regulator FleN YP_002794785.1 Flagellar biosynthetic protein FlhF; positive regulator of class III flagellar genes YP_002794786.1 Flagellar biosynthesis protein flhA YP_002794787.1 Flagellar biosynthetic protein flhB YP_002794788.1 Thymidylate synthase; ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived YP_002794790.1 3-oxoadipate enol-lactonase YP_002794795.1 Protein recA; catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_002794796.1 Regulatory protein RecX YP_002794799.1 Transcriptional regulator, LysR family YP_002794802.1 Protein fdhE YP_002794803.1 Formate dehydrogenase YP_002794804.1 Formate dehydrogenase YP_002794807.1 Formate dehydrogenase accessory protein YP_002794808.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation. YP_002794819.1 Transposase IS3/IS911 YP_002794832.1 Glycosyl transferase, group 2 family YP_002794843.1 Hydrogenase maturation factor YP_002794856.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; subclass 1A is a dimer formed by two identical PyrD subunits each containing an FMN group YP_002794857.1 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein YP_002794858.1 tRNA(Ile)-lysidine synthase (EC 6.3.4.-) (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) YP_002794864.1 Trigger factor; Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_002794866.1 ATP-dependent Clp protease ATP-binding subunit clpX YP_002794869.1 3-phosphoshikimate 1-carboxyvinyltransferase YP_002794870.1 Cytidylate kinase YP_002794871.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_002794872.1 Integration host factor subunit beta YP_002794875.1 Orotidine 5'-phosphate decarboxylase YP_002794876.1 ADP-heptose synthase YP_002794877.1 ADP-L-glycero-D-manno-heptose-6-epimerase YP_002794879.1 Peptidoglycan N-acetylmuramoylhydrolase YP_002794882.1 Ribonuclease H YP_002794883.1 DNA-directed DNA polymerase, epsilon chain YP_002794884.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_002794886.1 Ribose-5-phosphate isomerase A; Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway YP_002794887.1 Phosphate transport system regulatory protein YP_002794888.1 Exopolyphosphatase YP_002794891.1 Universal stress protein UspA and related nucleotide-binding proteins YP_002794915.1 Arsenite efflux pump ACR3 and related permeases YP_002794925.1 NADH oxidase similar to Rsp0136 YP_002794933.1 RNA chaperone, transcription antiterminator, affects expression of rpoS and uspA YP_002794934.1 Translation initiation factor IF-1 YP_002794936.1 Chemotaxis protein methyltransferase YP_002794938.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate YP_002794940.1 Dipeptide transport system permease protein YP_002794941.1 Dipeptide transport system permease protein YP_002794942.1 ATP-binding component of ABC transporter YP_002794943.1 Dipeptide transport system ATP-binding protein; Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides YP_002794945.1 PhbF protein YP_002794948.1 tRNA delta(2)-isopentenylpyrophosphate transferase YP_002794952.1 3-demethylubiquinone-9 3-methyltransferase YP_002794953.1 Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline YP_002794958.1 mnmC, yfcK, trmC; catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules YP_002794961.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_002794964.1 DNA polymerase subunits gamma and tau YP_002794965.1 similar to UPF0133 protein CV_1611 YP_002794966.1 Recombination protein recR; involved in a recombinational process of DNA repair, independent of the recBC complex YP_002794973.1 Lipoyl synthase; catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_002794974.1 Octanoyltransferase; lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein YP_002794976.1 D-ala-D-ala-carboxypeptidase YP_002794977.1 Threonine dehydratase; threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway YP_002794980.1 FdrA protein; multicopy suppressor of dominant negative ftsH mutations YP_002794981.1 ylbE; cytoplasmic protein YP_002794982.1 cytoplasmic protein YP_002794983.1 HTH-type transcriptional activator allS; activator of the allDC-ylbA operon involved in allantoin utilization YP_002794989.1 Acetyl-CoA acyltransferase-like protein; Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_002794991.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_002794994.1 MucK, cis,cis-muconate transport protein YP_002794996.1 CcoN; FixN YP_002794997.1 CcoO; FixO YP_002794998.1 Cytochrome c oxidase, subunit CcoQ YP_002795003.1 Glycine cleavage T-protein YP_002795004.1 Arginyl-tRNA synthetase; catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_002795006.1 TonB family protein precursor YP_002795010.1 3'-5' exonuclease of DNA polymerase III YP_002795012.1 Benzoate transporter precursor YP_002795013.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex YP_002795015.1 Protein-export membrane protein SecF; forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_002795018.1 Formyltetrahydrofolate deformylase YP_002795019.1 Bifunctional protein folD [Includes: Methylenetetrahydrofolate dehydrogenase (EC 1.5.1.5) YP_002795021.1 methyl-accepting chemotaxis protein YP_002795026.1 transposase similar to Xoo1999 YP_002795035.1 Arginine decarboxylase YP_002795038.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits YP_002795039.1 Protein crcB homolog 2 YP_002795040.1 Protein crcB homolog 2; may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling YP_002795043.1 UreG-2, urease accessory protein UreG YP_002795046.1 Cobalamin (Vitamin B12) biosynthesis CbiM protein precursor YP_002795047.1 Protein hdeA precursor YP_002795050.1 serine transporter family protein; K03837 serine transporter YP_002795056.1 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB YP_002795058.1 Type II secretory pathway, component PulD YP_002795067.1 Serine protease YP_002795069.1 Pseudouridine synthase YP_002795075.1 csy4_1; CRISPR-associated protein, Csy4 family YP_002795076.1 Thiosulphate-binding protein precursor YP_002795078.1 Cobalt ABC transporter CbiQ, permease subunit YP_002795080.1 Chloride channel protein YP_002795089.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_002795094.1 Selenophosphate synthase YP_002795096.1 Amino acid transporter YP_002795097.1 APC family amino acid-polyamine-organocation transporter glutamate:gamma-aminobutyrate antiporter YP_002795098.1 Binding-protein-dependent transport systems inner membrane component YP_002795100.1 Binding-protein-dependent transport systems inner membrane component YP_002795101.1 Peptide ABC transporter, ATP-binding protein YP_002795102.1 Exodeoxyribonuclease 7 large subunit; bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides YP_002795103.1 Tetraacyldisaccharide 4'-kinase; transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate YP_002795105.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS YP_002795106.1 Adenylate kinase; essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_002795108.1 Protein kinase YP_002795111.1 Acetoacetyl-CoA reductase YP_002795112.1 Poly(3-hydroxyalkanoate) polymerase YP_002795113.1 Acetyl-CoA acetyltransferase; Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis YP_002795115.1 Valyl-tRNA synthetase; valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_002795126.1 Queuosine biosynthesis protein queC YP_002795141.1 Agmatinase; catalyzes the formation of putrescine from agmatine YP_002795151.1 Lytic enzyme YP_002795164.1 Ner-like DNA-binding protein YP_002795169.1 Tail protein D similar to Rs03471 YP_002795172.1 transposase similar to Xoo1999 YP_002795174.1 Type I site-specific restriction-modification system, R subunit YP_002795175.1 Type I site-specific restriction-modification system, R subunit YP_002795177.1 transposase YP_002795182.1 solute-binding periplasmic protein of ABC transport precursor YP_002795183.1 Binding-protein-dependent transport systems inner membrane component YP_002795187.1 DctD; similar to RS01981 YP_002795188.1 Ferric citrate transport system ATP-binding protein YP_002795195.1 oxygen-independent coproporphyrinogen III oxidase YP_002795199.1 Ribulose-phosphate 3-epimerase YP_002795202.1 Exodeoxyribonuclease V, beta subunit YP_002795203.1 Exodeoxyribonuclease V gamma chain YP_002795205.1 Peptidoglycan N-acetylmuramoylhydrolase YP_002795206.1 Heat-inducible transcription repressor hrcA; Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons YP_002795210.1 DNA repair protein recN YP_002795211.1 inorganic polyphosphate/ATP-NAD kinase (EC 2.7.1.23) (Poly(P)/ATP NAD kinase); catalyzes the phosphorylation of NAD to NADP YP_002795213.1 Molybdenum cofactor biosynthesis protein A YP_002795214.1 multiple antibiotic resistance protein marC; protein involved in resistance to different drugs (tetracycline, chloramphenicol, beta-lactams, and quinolones); part of the multiple antibiotic resistance (mar) locus, which is composed by the genes marC and marRAB; unknown function YP_002795215.1 Adenosine deaminase YP_002795216.1 Periplasmic serine protease YP_002795220.1 Electron transport complex, G subunit YP_002795221.1 Electron transport complex protein RnfD YP_002795222.1 biquinone oxidoreductase, subunit RnfC YP_002795223.1 electron transport complex protein RnfB YP_002795224.1 Electron transport complex protein rnfA YP_002795225.1 Acetyl-coenzyme A synthetase; Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA YP_002795226.1 sodium:solute symporter; member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake YP_002795229.1 catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine YP_002795231.1 peptidyl-prolyl cis-trans isomerase YP_002795235.1 DNA transport competence protein YP_002795236.1 Nitrogen regulatory protein P-II-1 YP_002795237.1 Phophoribosylformylglycinamidine synthase; catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_002795239.1 Bacterioferritin YP_002795240.1 BFD-like (2Fe-2S)-binding region; K02192 bacterioferritin-associated ferredoxin YP_002795242.1 Isocitrate/isopropylmalate dehydrogenase YP_002795243.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde YP_002795248.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_002795249.1 N-(5'-phosphoribosyl)anthranilate isomerase YP_002795250.1 Tryptophan synthase beta chain; catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_002795251.1 Tryptophan synthase alpha chain YP_002795252.1 Acetyl-CoA carboxylase; catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits YP_002795259.1 Na+ symporter precursor; member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake YP_002795261.1 Cysteine synthase B; catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide YP_002795263.1 Catalase YP_002795268.1 Glutamine-dependent NAD synthetase signal peptide protein YP_002795269.1 Polysialic acid transport protein kpsD precursor YP_002795281.1 Phage tail sheath protein YP_002795285.1 drug efflux pump transmembrane protein YP_002795295.1 P-type ATPase involved in magnesium influx YP_002795304.1 Permease-like protein YP_002795305.1 xanthine/uracil/vitamin C permease; K06901 MFS transporter, AGZA family, xanthine/uracil permease YP_002795323.1 Cyclopropane-fatty-acyl-phospholipid synthase YP_002795343.1 Transcriptional repressor of znuABC operon YP_002795346.1 Zinc transport system ATP-binding protein YP_002795347.1 Membrane protein YP_002795348.1 High-affinity zinc transport system substrate-binding protein YP_002795349.1 RarD protein, chloamphenicol sensitive YP_002795358.1 Chemotaxis regulator protein CheY YP_002795359.1 Chemotaxis protein CheV YP_002795360.1 methyl-accepting chemotaxis protein YP_002795368.1 Transcriptional regulator YP_002795370.1 Inorganic diphosphatase YP_002795373.1 Secretion protein HlyD family protein YP_002795375.1 Transcriptional repressor emr operon, MarR family YP_002795379.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity YP_002795380.1 pterin-4-alpha-carbinolamine dehydratase YP_002795383.1 with MdtJ is involved in resistance to deoxycholate, nalidixic acid, fosfomycin, and SDS YP_002795384.1 ydgF; multidrug transport protein (SMR superfamily) YP_002795390.1 NADP-dependent malate dehydrogenase; NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate YP_002795392.1 C4-dicarboxylate transport system, permease small subunit YP_002795395.1 Polynucleotide adenylyltransferase YP_002795397.1 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_002795398.1 Pantothenate synthetase; catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_002795399.1 Aspartate 1-decarboxylase precursor (EC 4.1.1.11) (Aspartate alpha- decarboxylase) [Contains: Aspartate 1-decarboxylase beta chain YP_002795403.1 Glutaminyl-tRNA synthetase; catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002795404.1 Cysteinyl-tRNA synthetase YP_002795405.1 50S ribosomal protein L31 YP_002795409.1 ABC transport protein, msbA family YP_002795410.1 [Protein-PII] uridylyltransferase; catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein YP_002795411.1 permease YjgP/YjgQ; K07091 YP_002795412.1 permease YjgP/YjgQ; K07091 YP_002795413.1 cytosol aminopeptidase; catalyzes the removal of N-terminal amino acids preferably leucine from various peptides YP_002795414.1 DNA polymerase III, chi subunit YP_002795421.1 Bacteriophage N4 adsorption protein B YP_002795422.1 similar to UPF0234 protein BMA0373 YP_002795425.1 Membrane-fusion protein YP_002795428.1 Dihydrodipicolinate reductase; catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_002795429.1 outer membrane lipoprotein OmlA YP_002795430.1 Ferric uptake regulation protein YP_002795431.1 Leucyl/phenylalanyl-tRNA--protein transferase YP_002795432.1 arginyl-tRNA--protein transferase; Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate YP_002795444.1 Biosynthetic arginine decarboxylase; catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis YP_002795446.1 Indole-3-glycerol phosphate synthase YP_002795447.1 Hydrolase, alpha/beta fold family YP_002795448.1 Molybdopterin biosynthesis Mog protein YP_002795449.1 similar to UPF0307 protein CV_3198 YP_002795453.1 thioesterase YP_002795456.1 RNA polymerase sigma-E factor YP_002795458.1 Positive regulator of sigma E activity YP_002795459.1 Serine protease MucD YP_002795461.1 GTP-binding protein lepA; binds to the ribosome on the universally-conserved alpha-sarcin loop YP_002795462.1 Signal peptidase I YP_002795463.1 Ribonuclease 3; cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity YP_002795464.1 era, yqfH, sdgE, bex, rbaA; Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_002795465.1 DNA repair protein recO; involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA YP_002795466.1 Pyridoxine 5'-phosphate synthase; involved in the de novo synthesis of pyridoxine (Vitamin B6) YP_002795467.1 Holo-[acyl-carrier-protein] synthase YP_002795468.1 methyl-accepting chemotaxis protein YP_002795470.1 Regulator of ribonuclease activity A; regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity YP_002795472.1 Response regulator YP_002795475.1 tetrathionate reductase complex, subunit C YP_002795476.1 Tetrathionate reductase, subunit B YP_002795477.1 Single-stranded DNA-binding protein YP_002795480.1 Thioredoxin reductase YP_002795483.1 Alanyl-tRNA synthetase; Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002795485.1 Peptidoglycan N-acetylmuramoylhydrolase YP_002795486.1 Potassium uptake protein, TrkH family YP_002795487.1 Potassium uptake system NAD-binding component YP_002795490.1 Catalyzes the oxidation of dihydrolipoamide to lipoamide YP_002795491.1 Phosphomannomutase YP_002795492.1 Anthranilate phosphoribosyltransferase; Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_002795493.1 Anthranilate synthase; TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity YP_002795494.1 Single-stranded DNA-binding protein YP_002795508.1 similar to Bbp27 YP_002795509.1 similar to Bcep22gp36 YP_002795512.1 similar to Bbp27 YP_002795514.1 type I restriction-modification methylase YP_002795519.1 Type I site-specific restriction-modification system, R subunit YP_002795534.1 similar to Bbp24 YP_002795538.1 similar to Bbp18 YP_002795542.1 similar to Bbp14 YP_002795543.1 similar to Bbp13 YP_002795547.1 Similar to proteic killer suppression protein YP_002795548.1 similar to Bbp12 YP_002795549.1 similar to Bbp11 YP_002795552.1 similar to Bbp9 YP_002795557.1 yfjL; CP4-57 prophage; protein YP_002795559.1 ORF48 YP_002795569.1 Potassium-transporting ATPase A chain YP_002795571.1 Potassium-transporting ATPase C chain YP_002795572.1 Sensor protein YP_002795573.1 Two component transcriptional regulator, winged helix family YP_002795576.1 Phosphonate metabolism protein PhnM YP_002795577.1 Phosphonates transport ATP-binding protein phnL YP_002795578.1 Phosphonates transport ATP-binding protein phnK YP_002795579.1 Phosphonate metabolism protein PhnJ YP_002795580.1 Phosphonate metabolism protein PhnI YP_002795581.1 Phosphonate metabolism protein PhnH YP_002795582.1 Phosphonate metabolism protein PhnG YP_002795583.1 Transcriptional regulator, GntR family YP_002795584.1 ATP-binding component of phosphonate transport YP_002795587.1 Sulfate/thiosulfate import ATP-binding protein cysA 2 YP_002795592.1 Ribonucleotide reductase system YP_002795594.1 NCS2 family nucleobase:cation symporter-2 YP_002795595.1 similar to UPF0345 protein MCA1207 YP_002795598.1 Protein disulfide-isomerase YP_002795600.1 Excinuclease ABC, subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate YP_002795604.1 3-hydroxyacyl-CoA dehydrogenase YP_002795605.1 Acetyl-CoA C-acyltransferase; Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_002795619.1 Oxidoreductase, molybdopterin binding YP_002795631.1 Gp21 YP_002795640.1 Gp14, phage major tail tube protein YP_002795682.1 Polyamine ABC transporter system, substrate-binding protein YP_002795683.1 High-affinity choline transport protein YP_002795684.1 Thioredoxin YP_002795685.1 Transcription termination factor rho; An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_002795688.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_002795689.1 Sulfate adenylyltransferase subunit 1 YP_002795693.1 BolA-like protein YP_002795695.1 intracellular septation protein YP_002795699.1 Aerotaxis receptor YP_002795701.1 endonuclease/exonuclease/phosphatase; K06896 YP_002795704.1 Ribokinase YP_002795705.1 D-ribose transport system permease protein; cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source YP_002795706.1 Ribose import ATP-binding protein rbsA YP_002795707.1 D-ribose transport system permease protein YP_002795708.1 Ribose ABC transporter, substrate binding protein YP_002795710.1 Superoxide dismutase YP_002795714.1 K potassium transporter YP_002795718.1 transmembrane protein, DMT Superfamily YP_002795719.1 darR; AraC family transcriptional regulator YP_002795732.1 Replicative DNA helicase YP_002795735.1 PmbA protein YP_002795737.1 Disulfide bond formation protein B YP_002795738.1 Aminoacyl-histidine dipeptidase YP_002795750.1 22R YP_002795751.1 21R YP_002795762.1 phage hk022 gp9-related protein similar to Rs04080 YP_002795791.1 RecF protein YP_002795794.1 Catalyzes the rate-limiting step in dNTP synthesis YP_002795796.1 Ribonucleoside-diphosphate reductase system YP_002795805.1 DNA-binding response regulator YP_002795806.1 Sensor protein YP_002795808.1 effector of murein hydrolase LrgA YP_002795810.1 sec-C motif domain protein; K09858 SEC-C motif domain protein YP_002795811.1 Methionine aminopeptidase YP_002795814.1 TRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_002795821.1 Lipoprotein releasing system trasmembrane protein YP_002795822.1 Lipoprotein-releasing system ATP-binding protein lolD YP_002795823.1 Transmembrane protein YP_002795825.1 NTP pyrophosphohydrolases including oxidative damage repair enzymes YP_002795826.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_002795827.1 Nicotinate-nucleotide pyrophosphorylase YP_002795829.1 DNA gyrase, subunit A; negatively supercoils closed circular double-stranded DNA YP_002795832.1 Phosphoserine aminotransferase; catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine YP_002795833.1 Chorismate mutase/prephenate dehydratase YP_002795834.1 lysine decarboxylase; K06966 YP_002795835.1 Histidinol-phosphate aminotransferase YP_002795836.1 Anthranilate synthase component I YP_002795837.1 Phosphoglycolate phosphatase YP_002795838.1 MaoC protein YP_002795839.1 Beta-hexosaminidase; hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides YP_002795842.1 Transmembrane protein YP_002795843.1 Glutamyl-tRNA synthetase; Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_002795845.1 23S rRNA (uracil-5-)-methyltransferase rumA (EC 2.1.1.-) (23S rRNA(M- 5-U1939)-methyltransferase) YP_002795846.1 Enoyl-[acyl-carrier-protein] reductase; Catalyzes a key regulatory step in fatty acid biosynthesis YP_002795849.1 Diaminopimelate epimerase YP_002795850.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_002795853.1 Leucine-responsive regulatory protein YP_002795854.1 Proline dehydrogenase; proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the protein from Pseudomonas does not have this domain YP_002795865.1 Monofunctional biosynthetic peptidoglycan transglycosylase; glycosyltransferase; polymerizes glycan strands in the peptidoglycan YP_002795866.1 Shikimate 5-dehydrogenase YP_002795869.1 Glutamine synthetase YP_002795870.1 60 kDa chaperonin 2 YP_002795871.1 10 kDa chaperonin; 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_002795879.1 NADP-specific glutamate dehydrogenase; converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer YP_002795880.1 Glutamate dehydrogenase YP_002795881.1 Arginine/ornithine transport system substrate-binding protein YP_002795886.1 HemK protein YP_002795898.1 Sensor protein YP_002795899.1 Nitrogen assimilation regulatory response regulator/transcription regulator protein YP_002795900.1 DNA repair protein radC homolog YP_002795902.1 DNA/pantothenate metabolism flavoprotein; catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine YP_002795903.1 Deoxyuridine 5'-triphosphate nucleotidohydrolase YP_002795904.1 Leucine/isoleucine/valine transport system ATP-binding protein YP_002795905.1 Leucine/isoleucine/valine transport system ATP-binding protein YP_002795906.1 Leucine/isoleucine/valine transport system permease protein YP_002795907.1 Leucine/isoleucine/valine transport system permease protein YP_002795909.1 Arginine N-succinyltransferase YP_002795910.1 Arginine N-succinyltransferase YP_002795911.1 Acetylornithine and succinylornithine aminotransferase YP_002795912.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_002795913.1 similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate YP_002795917.1 Polyribonucleotide nucleotidyltransferase YP_002795918.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_002795919.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs YP_002795920.1 Ribosome-binding factor A; associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_002795921.1 Translation initiation factor IF-2; Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_002795922.1 N utilization substance transcription regulator protein; modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_002795923.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins YP_002795924.1 Long chain fatty-acid CoA ligase YP_002795925.1 Arsenate reductase and related YP_002795926.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica. YP_002795931.1 patatin; K07001 YP_002795932.1 Nucleoside-triphosphatase; HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine YP_002795933.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_002795949.1 ABC-type cobalt transport system YP_002795950.1 ABC-transport protein, ATP-binding component YP_002795951.1 ABC-transport protein, ATP-binding component YP_002795952.1 Dihydroorotate dehydrogenase YP_002795960.1 ABC transporter related YP_002795963.1 catalyze the formation of cyanophycin which may act to store excess nitrogen YP_002795966.1 membrane-associated, metal-dependent hydrolase YP_002795977.1 Sulfate/thiosulfate import ATP-binding protein cysA YP_002795988.1 ORF48 YP_002795999.1 similar to Bbp9 YP_002796000.1 similar to Bbp9 YP_002796003.1 type I restriction-modification methylase YP_002796010.1 Pyridoxamine 5'-phosphate oxidase; catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate YP_002796011.1 Glutathione-regulated potassium-efflux system protein YP_002796018.1 RNA polymerase N (Sigma54) factor; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen YP_002796021.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system YP_002796027.1 ribosome-associated heat shock protein Hsp15 YP_002796032.1 DNA repair protein radA; Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_002796039.1 ADP-ribosylation/Crystallin J1 YP_002796041.1 Methionine import ATP-binding protein metN; part of the metNIQ transport system for methionine YP_002796042.1 permease of ABC transporter YP_002796045.1 ABC-type transport system, involved in lipoprotein release, permease component YP_002796053.1 oligopeptide transport protein YP_002796056.1 Fe-S-cluster oxidoreductase YP_002796061.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_002796062.1 Phosphatidate cytidylyltransferase YP_002796063.1 Undecaprenyl pyrophosphate synthetase YP_002796064.1 Ribosome recycling factor; Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_002796065.1 Uridylate kinase; Catalyzes the phosphorylation of UMP to UDP YP_002796066.1 Elongation factor Ts; EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_002796067.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_002796069.1 Nitrate/nitrite response regulator protein narL YP_002796070.1 Transmembrane nitrate/nitrite sensor kinase transcription regulator protein YP_002796072.1 COG1145: Ferredoxin YP_002796074.1 Periplasmic nitrate reductase NapA; periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC YP_002796075.1 4Fe-4S ferredoxin-type protein associated with nitrate reductase activity YP_002796076.1 NapH protein YP_002796078.1 Cytochrome c-type protein napC YP_002796080.1 ABC transporter, permease domain, ccmB, heme exporter protein B YP_002796081.1 ABC transporter, permease domain, ccmC, heme exporter YP_002796086.1 Cytochrome C biogenesis protein precursor YP_002796094.1 Segregation and condensation protein A YP_002796095.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002796097.1 translation factor YP_002796098.1 PHP C-terminal domain protein; php-like YP_002796101.1 L-asparaginase 1 YP_002796103.1 O-succinylhomoserine sulfhydrylase YP_002796104.1 Amidophosphoribosyltransferase; Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_002796105.1 Colicin V production protein YP_002796106.1 Lipoprotein YP_002796107.1 Folylpolyglutamate synthase/dihydrofolate synthase YP_002796110.1 ABC transporter ATP-binding protein YP_002796113.1 Fructose-1,6-bisphosphatase YP_002796119.1 General substrate transporter YP_002796122.1 Membrane-fusion protein YP_002796123.1 Hydrophobe/amphiphile efflux-1 HAE1 precursor YP_002796127.1 ATP-dependent DNA helicase; helicase involved in DNA repair and perhaps also replication YP_002796130.1 2-octaprenyl-6-methoxyphenol hydroxylase oxidoreductase protein YP_002796131.1 Xaa-Pro aminopeptidase YP_002796134.1 tldD protein family YP_002796137.1 Glutamate-ammonia-ligase adenylyltransferase; catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme YP_002796138.1 Branched-chain-amino-acid transaminase; catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_002796140.1 ADP-heptose--LPS heptosyltransferase II YP_002796142.1 GTP-binding protein TypA YP_002796144.1 Aconitate hydratase; catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate YP_002796146.1 Aconitate hydratase; Catalyzes the conversion of citrate to isocitrate YP_002796161.1 FAD dependent oxidoreductase YP_002796163.1 N-carbamoylputrescine amidohydrolase YP_002796165.1 Argininosuccinate synthase; catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_002796173.1 DNA-binding protein hu-beta YP_002796177.1 33 kDa chaperonin YP_002796181.1 Transcription elongation factor; necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_002796182.1 Copper homeostasis protein CutF YP_002796189.1 Acyl-CoA thioesterase YP_002796199.1 Chemotaxis motB protein; with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine YP_002796200.1 Chemotaxis motA protein; With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine YP_002796203.1 Alanine dehydrogenase YP_002796210.1 Protein involved in catabolism of external DNA YP_002796212.1 Competence lipoprotein ComL YP_002796213.1 Pseudouridine synthase YP_002796216.1 Cold-shock domain family protein YP_002796217.1 Amino acid ABC transporter YP_002796226.1 similar to UPF0191 membrane protein XCC1587 YP_002796227.1 similar to UPF0190 protein CV_0789 precursor; in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ YP_002796229.1 Peptidase T-like protein YPO1009/y3403/YP_3421; catalyzes the release of the N-terminal amino acid from a tripeptide YP_002796231.1 ABC-2 type transport system permease protein YP_002796232.1 ABC-type multidrug transport system, ATPase component YP_002796237.1 Dihydroxy-acid dehydratase; catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_002796238.1 Prolipoprotein diacylglyceryl transferase; transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_002796239.1 Nitrogen fixation protein YP_002796245.1 Cytochrome bd-type quinol oxidase, subunit 1 YP_002796246.1 Cytochrome bd-type quinol oxidase, subunit 2 YP_002796251.1 Anaerobic ribonucleoside-triphosphate reductase; Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_002796252.1 Anaerobic ribonucleoside-triphosphate reductase-activating protein YP_002796255.1 ADPribose diphosphatase YP_002796258.1 L-serine ammonia-lyase YP_002796269.1 ATP-dependent helicase hrpA YP_002796270.1 Formate--tetrahydrofolate ligase YP_002796271.1 Lipid-A-disaccharide synthase YP_002796272.1 Acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase YP_002796273.1 (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.-) ((3R)-hydroxymyristoyl ACP dehydrase); in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP YP_002796275.1 Outer membrane protein YP_002796286.1 Multifunctional CCA protein [Includes: CCA-adding enzyme (EC 2.7.7.25) (EC 2.7.7.21) (tRNA nucleotidyltransferase) (tRNA adenylyl-/cytidylyl- transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT) YP_002796290.1 Molybdopterin biosynthesis moeA protein YP_002796291.1 Molybdopterin-guanine dinucleotide biosynthesis protein B YP_002796299.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate YP_002796301.1 catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity YP_002796302.1 Catalyzes the conversion of citrate to isocitrate YP_002796304.1 Transposase IS3/IS911 YP_002796305.1 Transposase IS3/IS911 YP_002796308.1 CinA-related protein YP_002796309.1 Glucose-6-phosphate isomerase 2 YP_002796312.1 Inner membrane protein alx YP_002796313.1 Long-chain fatty acid transport protein YP_002796314.1 Exodeoxyribonuclease 7 small subunit YP_002796315.1 Geranyltranstransferase YP_002796316.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_002796319.1 Biotin and thiamin synthesis associated YP_002796320.1 Hyd gamma YP_002796327.1 similar to UPF0313 protein CV_1738 YP_002796328.1 Acetylglutamate kinase YP_002796329.1 Amino-acid N-acetyltransferase; catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis YP_002796332.1 Succinate dehydrogenase or fumarate reductase, flavoprotein subunit; part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB YP_002796333.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB YP_002796336.1 DNA-binding protein hu-beta YP_002796337.1 ATP-dependent protease La YP_002796339.1 Flagellar biosynthetic protein FliR YP_002796340.1 Flagellar biosynthetic protein FliQ YP_002796342.1 flagellar biosynthetic protein fliP; FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus YP_002796343.1 Flagellar protein FliO YP_002796344.1 Flagellar motor switch protein YP_002796345.1 Flagellar motor switch protein; with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation YP_002796346.1 Flagellar fliL transmembrane protein YP_002796349.1 Flagellum-specific ATP synthase YP_002796350.1 Flagellar assembly protein FliH YP_002796351.1 Flagellar motor switch protein YP_002796352.1 Flagellar M-ring protein YP_002796353.1 Flagellar hook-basal body complex protein; forms a junction between the M-ring and FlgB during flagella biosynthesis YP_002796360.1 O-sialoglycoprotein endopeptidase; in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_002796361.1 ATPase, AAA family protein YP_002796370.1 Alcohol dehydrogenase class III YP_002796377.1 Phosphatidylglycerophosphatase YP_002796378.1 catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP YP_002796379.1 N utilization substance protein B homolog; Regulates rRNA biosynthesis by transcriptional antitermination YP_002796380.1 6,7-dimethyl-8-ribityllumazine synthase YP_002796381.1 Riboflavin biosynthesis bifunctional protein : GTP cyclohydrolase ii and 3,4-dihydroxy-2-butanone-4-phosphate synthase; similar to RS05140 YP_002796383.1 Riboflavin synthase, alpha chain; catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_002796384.1 Peptide chain release factor 3; stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein YP_002796388.1 Exodeoxyribonuclease VII YP_002796393.1 anmK, ydhH; catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling YP_002796394.1 Cell division ftsk transmembrane protein YP_002796395.1 Ferrochelatase YP_002796396.1 Aminopeptidase N YP_002796399.1 CAMP-binding protein-catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase YP_002796402.1 Succinyl-CoA ligase [ADP-forming] subunit alpha; Catalyzes the only substrate-level phosphorylation in the TCA cycle YP_002796403.1 Succinyl-CoA synthetase beta chain; catalyzes the interconversion of succinyl-CoA and succinate YP_002796404.1 Dihydrolipoyl dehydrogenase; E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_002796406.1 Dihydrolipoamide succinyltransferase E2 component; component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA YP_002796407.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide YP_002796408.1 Citrate (Si)-synthase; type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH YP_002796409.1 Succinate dehydrogenase iron-sulfur protein YP_002796410.1 Succinate dehydrogenase, flavoprotein subunit YP_002796411.1 Succinate dehydrogenase, hydrophobic subunit YP_002796412.1 Succinate dehydrogenase cytochrome b-556 subunit YP_002796414.1 Malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate YP_002796415.1 Peptide chain release factor 2 YP_002796416.1 Lysyl-tRNA synthetase; class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_002796420.1 Chemotaxis protein CheV YP_002796421.1 Chemotaxis protein CheV YP_002796422.1 Chemotaxis regulator protein CheY YP_002796423.1 Chemotaxis protein CheZ YP_002796429.1 Cytochrome c peroxidase YP_002796438.1 Exodeoxyribonuclease III YP_002796439.1 Aspartyl-tRNA synthetase; catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_002796443.1 Phosphate acetyltransferase; catalyzes the formation of acetyl phosphate from acetyl-CoA and phosphate; can also act with other short-chain acyl-CoAs YP_002796445.1 ABC transporter domain protein YP_002796447.1 Molybdenum transport protein modE YP_002796448.1 Molybdenum ABC transporter, periplasmic molybdate-binding protein YP_002796450.1 Molybdenum transport system permease YP_002796471.1 similar to Bbp27 YP_002796474.1 Signal recognition particle protein YP_002796476.1 Adenylosuccinate lyase; Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_002796486.1 Virulence factor mviN, MOP Superfamliy efflux pump precursor YP_002796487.1 Anaerobic dimethyl sulfoxide reductase, subunit A YP_002796488.1 Anaerobic dimethyl sulfoxide reductase chain B YP_002796489.1 Anaerobic dimethyl sulfoxide reductase subunit C YP_002796490.1 Twin-arginine leader-binding protein dmsD YP_002796491.1 30S ribosomal protein S20 YP_002796493.1 Two-component response sensor-transcriptional regulatory protein YP_002796495.1 Glutamate racemase; converts L-glutamate to D-glutamate, a component of peptidoglycan YP_002796500.1 Protein slyX homolog YP_002796503.1 Cytochrome b561 YP_002796505.1 cytidine deaminase YP_002796510.1 Chorismate synthase; catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_002796513.1 pili assembly chaperone transmembrane protein similar to Rs00027 YP_002796514.1 outer membrane usher transmembrane protein YP_002796519.1 septum site-determining protein minC YP_002796520.1 Septum site-determining protein MinD YP_002796521.1 Cell division topological specificity factor YP_002796522.1 Hydrogen peroxide-inducible genes activator YP_002796524.1 multidrug resistance protein norM; NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones YP_002796525.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_002796529.1 Low-affinity inorganic phosphate transporter 1 YP_002796532.1 Fumarate hydratase YP_002796535.1 NAD-dependent deacetylase YP_002796536.1 catalyzes the formation of L-tryptophan from indole and L-serine YP_002796537.1 ATP-dependent RNA helicase YP_002796539.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_002796544.1 4-amino-4-deoxychorismate lyase YP_002796546.1 O-acetylhomoserine (Thiol)-lyase YP_002796549.1 Seryl-tRNA synthetase (EC 6.1.1.11) (Seryl-tRNA(Ser/Sec) synthetase) YP_002796552.1 Large-conductance mechanosensitive channel YP_002796565.1 Methyl-accepting or sensory transducer chemotaxis protein YP_002796572.1 Terminase similar to Rs03508 YP_002796574.1 Phage major capsid protein, P2 family similar to Xoo1607 YP_002796576.1 Head completion protein YP_002796583.1 Tail completion protein-like protein similar to Rs03499 YP_002796584.1 tail completion-like protein similar to Rs03495 YP_002796590.1 ORF-191A YP_002796594.1 Major tail seath protein gpFI YP_002796596.1 Bacteriophage gpE similar to Rs03484 YP_002796616.1 CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase YP_002796617.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_002796618.1 Inosine-5'-monophosphate dehydrogenase YP_002796622.1 Fkbp-type peptidyl-prolyl cis-trans isomerase YP_002796624.1 ABC transporter, iron binding protein YP_002796625.1 ABC transport system, permease protein YP_002796630.1 Peptidase C39, bacteriocin processing precursor YP_002796631.1 lipoprotein precursor similar to Rs04456 YP_002796633.1 Ribonuclease PH YP_002796635.1 rbgA, ylqF YP_002796636.1 Deoxyribodipyrimidine photo-lyase YP_002796649.1 Thiamine biosynthesis protein thiC; required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_002796651.1 Thiamine-phosphate pyrophosphorylase YP_002796652.1 Hydroxyethylthiazole kinase YP_002796655.1 Phosphoenolpyruvate synthase; catalyzes the formation of phosphoenolpyruvate from pyruvate YP_002796656.1 Cytochrome c peroxidase YP_002796657.1 alcohol dehydrogenase YP_002796661.1 Tryptophanyl-tRNA synthetase; catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002796663.1 Polyamine ABC transporter protein YP_002796665.1 Polyamine transport protein PotC YP_002796666.1 Polyamine transport protein PotB YP_002796667.1 Spermidine/putrescine import ATP-binding protein potA YP_002796669.1 Outer membrane protein W YP_002796672.1 Uncharacterized conserved protein related to dihydrodipicolinate reductase YP_002796673.1 Spermidine synthase; catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine YP_002796686.1 DNA-directed DNA polymerase III, delta subunit; catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA YP_002796687.1 Thymidylate kinase; catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP) YP_002796689.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_002796690.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_002796692.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_002796693.1 flagellar protein YP_002796694.1 Uncharacterized flagellar protein FlaG YP_002796700.1 Transposase and inactivated derivatives YP_002796705.1 NAD-dependent epimerase/dehydratase YP_002796711.1 Transposase IS3/IS911 YP_002796712.1 Glycine dehydrogenase [decarboxylating]; acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine YP_002796713.1 Glycine cleavage system H protein YP_002796714.1 Aminomethyltransferase; catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein YP_002796715.1 Heme oxygenase YP_002796716.1 D-alanyl-D-alanine-endopeptidase YP_002796717.1 Carbamate kinase; reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP YP_002796718.1 Ornithine carbamoyltransferase, catabolic YP_002796719.1 Arginine deiminase; catalyzes the degradation of arginine to citruline and ammonia YP_002796720.1 Arginine/ornithine antiporter YP_002796721.1 Arginine/ornithine antiporter YP_002796722.1 Carbamate kinase; reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP YP_002796723.1 Ornithine carbamoyltransferase, catabolic YP_002796724.1 Arginine deiminase; catalyzes the degradation of arginine to citruline and ammonia YP_002796726.1 Na+/Ala+ symporter YP_002796728.1 Chaperone protein dnaJ; chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_002796729.1 Chaperone protein dnaK; heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_002796730.1 Protein grpE; with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor YP_002796741.1 Integration host factor subunit alpha; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control YP_002796742.1 Phenylalanyl-tRNA synthetase beta chain; catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_002796743.1 Phenylalanyl-tRNA synthetase alpha chain; catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_002796744.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_002796746.1 Translation initiation factor IF-3 YP_002796747.1 Threonyl-tRNA synthetase; catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_002796748.1 Queuine tRNA-ribosyltransferase; Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr) YP_002796750.1 Protein-export membrane protein secD; part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_002796752.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate YP_002796754.1 Carboxy-terminal processing protease YP_002796756.1 Amino-acid N-acetyltransferase; catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis YP_002796759.1 Arginine biosynthesis bifunctional protein ArgJ YP_002796760.1 ATP-dependent DNA helicase recQ YP_002796765.1 ATP-dependent DNA helicase YP_002796766.1 30S ribosomal protein S9 YP_002796767.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_002796769.1 GTP diphosphokinase YP_002796770.1 A/G-specific DNA glycosylase YP_002796792.1 bplC, wlbC YP_002796794.1 WblB protein YP_002796802.1 transcriptional activator YP_002796807.1 NolF secretion protein YP_002796808.1 NolG efflux transporter YP_002796809.1 Uroporphyrinogen decarboxylase YP_002796810.1 Primosomal protein N`; binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity YP_002796811.1 Succinate-semialdehyde dehydrogenase [NAD(P)] YP_002796812.1 4-aminobutyrate transaminase YP_002796814.1 Periplasmic type I secretion system YP_002796818.1 Acetylglutamate kinase; catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_002796820.1 hydrolase YP_002796823.1 Methyl-accepting chemotaxis protein YP_002796825.1 Serine-type D-Ala-D-Ala carboxypeptidase YP_002796826.1 Glutaredoxin 3 YP_002796827.1 Protein-export protein secB; molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA YP_002796829.1 Glycerol-3-phosphate dehydrogenase [NAD(P)] (EC 1.1.1.94) (NAD(P)H- dependent glycerol-3-phosphate dehydrogenase); catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_002796831.1 Pyruvate dehydrogenase complex repressor YP_002796837.1 Glutathione-regulated potassium-efflux system protein kefC (K()/H() antiporter) YP_002796839.1 alpha helix chain; K09760 DNA recombination protein RmuC YP_002796841.1 Deoxycytidine triphosphate deaminase YP_002796843.1 DGTPase; dGTPase family type 3 subfamily, presumably hydrolyzes dGTP to deoxyguanosine and triphosphate YP_002796848.1 Ferredoxin YP_002796849.1 Chaperone protein hscA homolog; involved in the maturation of iron-sulfur cluster-containing proteins YP_002796850.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins YP_002796853.1 Pyridoxal-phosphate-dependent aminotransferase YP_002796862.1 Hypoxanthine phosphoribosyltransferase; Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively YP_002796864.1 UTP-glucose-1-phosphate uridylyltransferase YP_002796865.1 DNA ligase YP_002796868.1 similar to UPF0301 protein CV_3909 YP_002796869.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function YP_002796873.1 Stringent starvation protein B YP_002796874.1 Stringent starvation protein A YP_002796875.1 Ubiquinol-cytochrome c reductase YP_002796876.1 Ubiquinol-cytochrome c reductase YP_002796877.1 Ubiquinol-cytochrome c reductase YP_002796882.1 Delta-aminolevulinic acid dehydratase; catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_002796884.1 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components YP_002796885.1 Phosphoglucosamine mutase; catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_002796886.1 Dihydropteroate synthase YP_002796888.1 Cell division protein FtsH YP_002796889.1 Ribosomal RNA large subunit methyltransferase J (EC 2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) YP_002796892.1 Transcription elongation factor YP_002796893.1 Carbamoyl-phosphate synthase large chain YP_002796895.1 Carbomyl phosphate synthetase small subunit; catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_002796910.1 Oligopeptidase A YP_002796914.1 Transcriptional regulator, TetR family YP_002796917.1 Acriflavin resistance protein D YP_002796918.1 Outer membrane efflux protein YP_002796920.1 Ammonium transporter YP_002796921.1 Nitrogen regulatory protein P-II-2 YP_002796924.1 Mg chelatase-related protein; K07391 magnesium chelatase family protein YP_002796926.1 Thiol:disulfide interchange protein dsbA YP_002796927.1 Undecaprenyl-diphosphatase YP_002796930.1 UPF0324 inner membrane protein yeiH YP_002796932.1 Uroporphyrin-III C-methyltransferase YP_002796934.1 Sugar transport PTS system phosphocarrier protein HPR YP_002796936.1 Lipid A export ATP-binding/permease protein msbA YP_002796942.1 Tfp pilus assembly protein FimV YP_002796944.1 3-dehydroquinate synthase YP_002796945.1 Shikimate kinase YP_002796946.1 Peptidoglycan glycosyltransferase YP_002796948.1 Homoserine O-acetyltransferase; Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine YP_002796950.1 Fe-S oxidoreductase YP_002796951.1 catalyzes the addition of a phosphoethanolamine group to the outer Kdo residue of lipopolysaccharide YP_002796953.1 Octaprenyl-diphosphate synthase YP_002796955.1 involved in the peptidyltransferase reaction during translation YP_002796957.1 GTP-binding protein; essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_002796960.1 MFS family, muropeptide transporter YP_002796964.1 Trp repressor binding protein YP_002796965.1 Ribonuclease BN; RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; this protein contains a C-terminal extension of unknown function YP_002796970.1 DNA-directed DNA polymerase I YP_002796973.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine YP_002796980.1 Ferredoxin--NADP reductase YP_002796981.1 DTDP-6-deoxy-D-glucose-3,5 epimerase YP_002796982.1 Glucose-1-phosphate thymidylyltransferase YP_002796985.1 Glucosamine-fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_002796986.1 Bifunctional protein glmU [Includes: UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23) (N-acetylglucosamine-1-phosphate uridyltransferase) YP_002796987.1 ATP synthase epsilon chain; part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane YP_002796988.1 ATP synthase subunit beta YP_002796989.1 ATP synthase gamma chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_002796990.1 ATP synthase subunit alpha YP_002796991.1 ATP synthase F1, delta subunit YP_002796992.1 ATP synthase B chain YP_002796993.1 ATP synthase C chain YP_002796994.1 ATP synthase A chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_002796998.1 Methyltransferase gidB; glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA YP_002796999.1 Glucose inhibited division protein A; GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_002797009.1 Phosphoheptose isomerase; catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate YP_002797015.1 Beta-lactamase YP_002797019.1 involved in the import of serine and threonine coupled with the import of sodium YP_002797023.1 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) (4- (phosphohydroxy)-L-threonine dehydrogenase); catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate) YP_002797025.1 Adenosylmethionine-8-amino-7-oxononanoate transaminase YP_002797028.1 secA, azi, div; functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_002797031.1 Ferrous iron transport protein A YP_002797032.1 Ferrous iron transport protein B:Small GTP-binding protein domain:GTP- binding YP_002797034.1 Molybdenum cofactor biosynthesis protein C YP_002797036.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_002797037.1 Cell division protein ftsZ; GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_002797038.1 Cell division protein ftsA YP_002797039.1 Cell division transmembrane protein YP_002797040.1 D-alanine--D-alanine ligase B; D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_002797041.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_002797044.1 Cell division protein ftsW YP_002797045.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_002797046.1 Phospho-N-acetylmuramoyl-pentapeptide-transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_002797047.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase YP_002797048.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate YP_002797049.1 Penicillin-binding protein 3 YP_002797050.1 Cell division protein YP_002797051.1 S-adenosyl-L-methionine-dependent methyltransferase mraW YP_002797054.1 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_002797055.1 Glutamyl-tRNA(Gln) amidotransferase subunit A YP_002797056.1 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain YP_002797057.1 Rod shape-determining protein mreB; functions in MreBCD complex in some organisms YP_002797058.1 Rod shape-determining protein mreC YP_002797059.1 Rod shape-determining protein MreD YP_002797060.1 Penicillin-binding protein 2 YP_002797061.1 rod shape-determining YP_002797066.1 Phosphoribosylaminoimidazole-succinocarboxamide synthase; catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_002797068.1 Phosphoribosylaminoimidazole carboxylase ATPase subunit; With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway YP_002797069.1 Phosphoribosylaminoimidazole carboxylase catalytic subunit YP_002797070.1 Thioredoxin-related transmembrane protein YP_002797080.1 Glutathione synthetase; catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione YP_002797082.1 GTP-binding protein engB; binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_002797083.1 Cytochrome-c oxidase YP_002797085.1 Cytochrome C-type biogenesis transmembrane protein YP_002797087.1 Glycerol kinase 2 YP_002797088.1 Glycerol-3-phosphate regulon repressor YP_002797093.1 Peptide chain release factor 1 YP_002797094.1 Glutamyl-tRNA reductase; catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins YP_002797098.1 Holliday junction ATP-dependent DNA helicase ruvA YP_002797099.1 COG1575: 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_002797101.1 Biotin synthesis protein YP_002797102.1 Carboxylesterase bioH YP_002797104.1 2-dehydro-3-deoxy-phosphogluconate aldolase YP_002797109.1 Argininosuccinate lyase; catalyzes the formation of arginine from (N-L-arginino)succinate YP_002797116.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis YP_002797117.1 ATP-dependent RNA helicase YP_002797119.1 Multidrug resistance protein B YP_002797121.1 outer membrane multidrug resistance lipoprotein YP_002797123.1 Porphobilinogen deaminase; transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_002797124.1 Phosphoenolpyruvate carboxylase; catalyzes the formation of oxaloacetate from phosphoenolpyruvate YP_002797130.1 DNA topoisomerase; catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining; maintains net negative superhelicity YP_002797131.1 Protein smg homolog YP_002797134.1 Peptide deformylase YP_002797136.1 Methionyl-tRNA formyltransferase YP_002797142.1 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains YP_002797146.1 Sulfate-binding protein of ABC transporter YP_002797147.1 CysT YP_002797151.1 Deoxyribonuclease I YP_002797154.1 Response regulator receiver protein; similar to RS05112 YP_002797155.1 hik39, cheA YP_002797157.1 ybgF; YbgF subunit of Tol-Pal cell envelope complex YP_002797158.1 Peptidoglycan-associated lipoprotein YP_002797159.1 Protein tolB precursor YP_002797161.1 TolR protein YP_002797167.1 DNA-binding stress protein YP_002797169.1 FxsA protein; F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein YP_002797170.1 periplasmic divalent cation tolerance protein YP_002797171.1 Thiol:disulfide interchange protein DsbD; two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm YP_002797176.1 Prolyl-tRNA synthetase; catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_002797177.1 Crossover junction endodeoxyribonuclease ruvC; endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity YP_002797181.1 Chaperone surA precursor YP_002797188.1 Gamma-glutamyl phosphate reductase; Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_002797193.1 Regulatory gene required to sense and relay the nitrogen status YP_002797194.1 DNA-binding protein Fis YP_002797195.1 Bifunctional purine biosynthesis protein purH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) (AICAR transformylase); involved in de novo purine biosynthesis YP_002797196.1 catalyzes the transfer of palmitate to lipid A YP_002797197.1 Phosphoribosylamine-glycine ligase YP_002797199.1 Orotate phosphoribosyltransferase; involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_002797200.1 Exodeoxyribonuclease III YP_002797203.1 Cobalamin (5'-phosphate) synthase YP_002797208.1 Periplasmic binding protein precursor YP_002797209.1 Cobalamin biosynthesis bifunctional protein: cobinamide kinase/cobinamide phosphate guanylyltransferase YP_002797211.1 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) (NN:DBI PRT) (N(1)-alpha-phosphoribosyltransferase) YP_002797212.1 Phosphoglycerate mutase YP_002797214.1 NAD(P) transhydrogenase, beta subunit YP_002797216.1 NAD(P) transhydrogenase, alpha subunit YP_002797221.1 trmE, thdF, mnmE; in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_002797222.1 Inner membrane protein oxaA; functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria YP_002797223.1 similar to UPF0161 protein CV_4405 YP_002797224.1 Ribonuclease P protein component; protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates YP_002797225.1 50S ribosomal protein L34 YP_002797226.1 Chromosomal replication initiator protein dnaA YP_002797227.1 DNA-directed DNA polymerase, beta subunit; binds the polymerase to DNA and acts as a sliding clamp YP_002797228.1 negatively supercoils closed circular double-stranded DNA YP_002797238.1 Biotin acetyl-CoA-carboxylase synthetase