-- dump date 20140619_123824 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type NP_964015.1 42518085 2743038 1..1365 1 NC_005362.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1365 dnaA 2743038 dnaA Lactobacillus johnsonii NCC 533 chromosomal replication initiation protein NP_964015.1 1 D 257314 CDS NP_964016.1 42518086 2743635 1546..2676 1 NC_005362.1 DNA polymerase III, beta chain 2676 2743635 LJ0002 Lactobacillus johnsonii NCC 533 DNA polymerase III, beta chain NP_964016.1 1546 D 257314 CDS NP_964017.1 42518087 2742647 2951..3100 1 NC_005362.1 hypothetical protein 3100 2742647 LJ0002b Lactobacillus johnsonii NCC 533 hypothetical protein NP_964017.1 2951 D 257314 CDS NP_964018.1 42518088 2742248 3104..4228 1 NC_005362.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 4228 recF 2742248 recF Lactobacillus johnsonii NCC 533 recombination protein F NP_964018.1 3104 D 257314 CDS NP_964019.1 42518089 2743732 4229..6196 1 NC_005362.1 DNA gyrase subunit B 6196 2743732 LJ0004 Lactobacillus johnsonii NCC 533 DNA gyrase subunit B NP_964019.1 4229 D 257314 CDS NP_964020.1 42518090 2741885 6207..8696 1 NC_005362.1 DNA gyrase subunit A 8696 2741885 LJ0005 Lactobacillus johnsonii NCC 533 DNA gyrase subunit A NP_964020.1 6207 D 257314 CDS NP_964021.1 42518091 2742439 8883..9179 1 NC_005362.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 9179 rpsF 2742439 rpsF Lactobacillus johnsonii NCC 533 30S ribosomal protein S6 NP_964021.1 8883 D 257314 CDS NP_964022.1 42518092 2743024 9213..9731 1 NC_005362.1 single-strand binding protein 9731 2743024 LJ0007 Lactobacillus johnsonii NCC 533 single-strand binding protein NP_964022.1 9213 D 257314 CDS NP_964023.1 42518093 2743696 9756..9992 1 NC_005362.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 9992 rpsR 2743696 rpsR Lactobacillus johnsonii NCC 533 30S ribosomal protein S18 NP_964023.1 9756 D 257314 CDS NP_964024.1 42518094 2743094 10086..11003 1 NC_005362.1 contains Mg+ and Co2+ transporter domain; hypothetical protein 11003 2743094 LJ0009 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964024.1 10086 D 257314 CDS NP_964025.1 42518095 2743243 11110..13128 1 NC_005362.1 contains DHH phosphoesterase domain; hypothetical protein 13128 2743243 LJ0010 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964025.1 11110 D 257314 CDS NP_964026.1 42518096 2742867 13140..13595 1 NC_005362.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 13595 rplI 2742867 rplI Lactobacillus johnsonii NCC 533 50S ribosomal protein L9 NP_964026.1 13140 D 257314 CDS NP_964027.1 42518097 2742791 13598..14971 1 NC_005362.1 replicative DNA helicase 14971 2742791 LJ0012 Lactobacillus johnsonii NCC 533 replicative DNA helicase NP_964027.1 13598 D 257314 CDS NP_964028.1 42518098 2743065 15069..15953 1 NC_005362.1 fructokinase 15953 2743065 LJ0013 Lactobacillus johnsonii NCC 533 fructokinase NP_964028.1 15069 D 257314 CDS NP_964029.1 42518099 2743161 complement(16017..17159) 1 NC_005362.1 hypothetical protein 17159 2743161 LJ0014 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964029.1 16017 R 257314 CDS NP_964030.1 42518100 2742638 complement(17277..19295) 1 NC_005362.1 hypothetical protein 19295 2742638 LJ0015 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964030.1 17277 R 257314 CDS NP_964031.1 42518101 2743143 complement(19628..20980) 1 NC_005362.1 contains amino acid permease domain; hypothetical protein 20980 2743143 LJ0016 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964031.1 19628 R 257314 CDS NP_964032.1 42518102 2742491 21517..22680 1 NC_005362.1 hypothetical protein 22680 2742491 LJ0017 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964032.1 21517 D 257314 CDS NP_964033.1 42518103 2743479 complement(22717..23577) 1 NC_005362.1 contains acyltransferase domain; hypothetical protein 23577 2743479 LJ0018 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964033.1 22717 R 257314 CDS NP_964034.1 42518104 2743666 23719..24366 1 NC_005362.1 hypothetical protein 24366 2743666 LJ0019 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964034.1 23719 D 257314 CDS NP_964035.1 42518105 2743472 complement(24563..25363) 1 NC_005362.1 contains transcriptional regulator helix-turn-helix domain; hypothetical protein 25363 2743472 LJ0020 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964035.1 24563 R 257314 CDS NP_964036.1 42518106 2743202 25638..26702 1 NC_005362.1 contains ThiF family domain; hypothetical protein 26702 2743202 LJ0021 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964036.1 25638 D 257314 CDS NP_964037.1 42518107 2743615 26708..27913 1 NC_005362.1 major facilitator superfamily permease 27913 2743615 LJ0022 Lactobacillus johnsonii NCC 533 major facilitator superfamily permease NP_964037.1 26708 D 257314 CDS NP_964038.1 42518108 2742170 complement(28305..28994) 1 NC_005362.1 hypothetical protein 28994 2742170 LJ0023 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964038.1 28305 R 257314 CDS NP_964039.1 42518109 2742948 29130..29837 1 NC_005362.1 contains probable haloacid dehalogenase-like hydrolase domain; hypothetical protein 29837 2742948 LJ0024 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964039.1 29130 D 257314 CDS NP_964040.1 42518110 2743268 complement(29872..30711) 1 NC_005362.1 contains DUF194 domain; hypothetical protein 30711 2743268 LJ0025 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964040.1 29872 R 257314 CDS NP_964041.1 42518111 2743555 31207..32814 1 NC_005362.1 ABC transporter ATPase and permease components 32814 2743555 LJ0026 Lactobacillus johnsonii NCC 533 ABC transporter ATPase and permease components NP_964041.1 31207 D 257314 CDS NP_964042.1 42518112 2741983 complement(32837..33646) 1 NC_005362.1 contains transcriptional regulator helix-turn-helix domain; hypothetical protein 33646 2741983 LJ0027 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964042.1 32837 R 257314 CDS NP_964043.1 42518113 2742620 33801..35720 1 NC_005362.1 contains elongation factor Tu GTP binding domain; hypothetical protein 35720 2742620 LJ0028 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964043.1 33801 D 257314 CDS NP_964044.1 42518114 2742767 complement(35975..37309) 1 NC_005362.1 contains voltage gated chloride channel domain; hypothetical protein 37309 2742767 LJ0029 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964044.1 35975 R 257314 CDS NP_964045.1 42518115 2742924 complement(37838..39571) 1 NC_005362.1 endopeptidase O 39571 2742924 LJ0030 Lactobacillus johnsonii NCC 533 endopeptidase O NP_964045.1 37838 R 257314 CDS NP_964046.1 42518116 2743215 39672..40538 1 NC_005362.1 contains transcriptional regulator helix-turn-helix domain; hypothetical protein 40538 2743215 LJ0031 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964046.1 39672 D 257314 CDS NP_964047.1 42518117 2742895 40727..42001 1 NC_005362.1 major facilitator superfamily permease 42001 2742895 LJ0032 Lactobacillus johnsonii NCC 533 major facilitator superfamily permease NP_964047.1 40727 D 257314 CDS NP_964048.1 42518118 2743673 complement(42139..43164) 1 NC_005362.1 transposase 43164 2743673 LJ0033 Lactobacillus johnsonii NCC 533 transposase NP_964048.1 42139 R 257314 CDS NP_964049.1 42518119 2742502 complement(43272..44198) 1 NC_005362.1 contains CorA-like Mg2+ transporter domain; hypothetical protein 44198 2742502 LJ0034 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964049.1 43272 R 257314 CDS NP_964050.1 42518120 2743493 44502..44663 1 NC_005362.1 hypothetical protein 44663 2743493 LJ0034b Lactobacillus johnsonii NCC 533 hypothetical protein NP_964050.1 44502 D 257314 CDS NP_964051.1 42518121 2742936 44703..44969 1 NC_005362.1 hypothetical protein 44969 2742936 LJ0035 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964051.1 44703 D 257314 CDS NP_964052.1 42518122 2741957 45106..45933 1 NC_005362.1 exodeoxyribonuclease 45933 2741957 LJ0036 Lactobacillus johnsonii NCC 533 exodeoxyribonuclease NP_964052.1 45106 D 257314 CDS NP_964053.1 42518123 2743213 46005..48845 1 NC_005362.1 contains helicase conserved C-terminal domain; hypothetical protein 48845 2743213 LJ0037 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964053.1 46005 D 257314 CDS NP_964054.1 42518124 2743361 48935..49441 1 NC_005362.1 hypothetical protein 49441 2743361 LJ0038 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964054.1 48935 D 257314 CDS NP_964055.1 42518125 2742362 49555..49821 1 NC_005362.1 hypothetical protein 49821 2742362 LJ0039 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964055.1 49555 D 257314 CDS NP_964056.1 42518126 2743450 complement(49857..50090) 1 NC_005362.1 hypothetical protein 50090 2743450 LJ0040 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964056.1 49857 R 257314 CDS NP_964057.1 42518127 2742820 50221..51270 1 NC_005362.1 contains DUF20 region; hypothetical protein 51270 2742820 LJ0041 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964057.1 50221 D 257314 CDS NP_964058.1 42518128 2741941 51471..52805 1 NC_005362.1 contains pyridine nucleotide-disulphide oxidoreductase domain; hypothetical protein 52805 2741941 LJ0042 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964058.1 51471 D 257314 CDS NP_964059.1 42518129 2742558 complement(52848..54002) 1 NC_005362.1 inosine-5-monophosphate dehydrogenase 54002 2742558 LJ0043 Lactobacillus johnsonii NCC 533 inosine-5-monophosphate dehydrogenase NP_964059.1 52848 R 257314 CDS NP_964060.1 42518130 2742661 complement(54076..54651) 1 NC_005362.1 hypothetical protein 54651 2742661 LJ0044 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964060.1 54076 R 257314 CDS NP_964061.1 42518131 2742217 complement(54728..55741) 1 NC_005362.1 D-lactate dehydrogenase 55741 2742217 LJ0045 Lactobacillus johnsonii NCC 533 D-lactate dehydrogenase NP_964061.1 54728 R 257314 CDS NP_964062.1 42518132 2742964 55999..58611 1 NC_005362.1 hypothetical protein 58611 2742964 LJ0046 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964062.1 55999 D 257314 CDS NP_964063.1 42518133 2742215 59228..65647 1 NC_005362.1 contains gram positive anchor domain; hypothetical protein 65647 2742215 LJ0047 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964063.1 59228 D 257314 CDS NP_964064.1 42518134 2743338 65803..68754 1 NC_005362.1 hypothetical protein 68754 2743338 LJ0048 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964064.1 65803 D 257314 CDS NP_964065.1 42518135 2743380 68742..70337 1 NC_005362.1 contains amino acid permease domain; hypothetical protein 70337 2743380 LJ0049 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964065.1 68742 D 257314 CDS NP_964066.1 42518136 2742957 70490..71416 1 NC_005362.1 contains transcriptional regulator helix-turn-helix domain, lysR family; hypothetical protein 71416 2742957 LJ0050 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964066.1 70490 D 257314 CDS NP_964067.1 42518137 2743056 71548..73398 1 NC_005362.1 contains FAD binding domain; hypothetical protein 73398 2743056 LJ0051 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964067.1 71548 D 257314 CDS NP_964068.1 42518138 2743107 73489..74853 1 NC_005362.1 branched-chain amino acid transporter 74853 2743107 LJ0052 Lactobacillus johnsonii NCC 533 branched-chain amino acid transporter NP_964068.1 73489 D 257314 CDS NP_964069.1 42518139 2742113 74904..75638 1 NC_005362.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 75638 ubiE 2742113 ubiE Lactobacillus johnsonii NCC 533 ubiquinone/menaquinone biosynthesis methyltransferase NP_964069.1 74904 D 257314 CDS NP_964070.1 42518140 2743721 75671..76585 1 NC_005362.1 prolinase PepPN 76585 2743721 LJ0054 Lactobacillus johnsonii NCC 533 prolinase PepPN NP_964070.1 75671 D 257314 CDS NP_964071.1 42518141 2743023 76704..77315 1 NC_005362.1 hypothetical protein 77315 2743023 LJ0055 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964071.1 76704 D 257314 CDS NP_964072.1 42518142 2743142 complement(77465..78415) 1 NC_005362.1 conjugated bile salt hydrolase 78415 2743142 LJ0056 Lactobacillus johnsonii NCC 533 conjugated bile salt hydrolase NP_964072.1 77465 R 257314 CDS NP_964073.1 42518143 2743687 complement(78431..79786) 1 NC_005362.1 bile salt transporter 79786 2743687 LJ0057 Lactobacillus johnsonii NCC 533 bile salt transporter NP_964073.1 78431 R 257314 CDS NP_964074.1 42518144 2742013 complement(79810..81168) 1 NC_005362.1 bile salt transporter 81168 2742013 LJ0058 Lactobacillus johnsonii NCC 533 bile salt transporter NP_964074.1 79810 R 257314 CDS NP_964075.1 42518145 2742479 complement(81470..82330) 1 NC_005362.1 contains acyltransferase domain; hypothetical protein 82330 2742479 LJ0059 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964075.1 81470 R 257314 CDS NP_964076.1 42518146 2743186 complement(82327..83277) 1 NC_005362.1 contains glycosyl transferase family 8 domain; hypothetical protein 83277 2743186 LJ0060 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964076.1 82327 R 257314 CDS NP_964077.1 42518147 2742562 complement(83290..84240) 1 NC_005362.1 contains glycosyl transferase family 8 domain; hypothetical protein 84240 2742562 LJ0061 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964077.1 83290 R 257314 CDS NP_964078.1 42518148 2743140 complement(84266..85090) 1 NC_005362.1 contains glycosyl transferase family 8 domain; hypothetical protein 85090 2743140 LJ0062 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964078.1 84266 R 257314 CDS NP_964079.1 42518149 2742187 complement(85092..85868) 1 NC_005362.1 hypothetical protein 85868 2742187 LJ0063 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964079.1 85092 R 257314 CDS NP_964080.1 42518150 2742864 86234..87511 1 NC_005362.1 transposase 87511 2742864 LJ0064 Lactobacillus johnsonii NCC 533 transposase NP_964080.1 86234 D 257314 CDS NP_964081.1 42518151 2743332 87816..88523 1 NC_005362.1 two-component regulatory system response regulator 88523 2743332 LJ0065 Lactobacillus johnsonii NCC 533 two-component regulatory system response regulator NP_964081.1 87816 D 257314 CDS NP_964082.1 42518152 2743259 88570..90420 1 NC_005362.1 two-component regulatory system histidine kinase 90420 2743259 LJ0066 Lactobacillus johnsonii NCC 533 two-component regulatory system histidine kinase NP_964082.1 88570 D 257314 CDS NP_964083.1 42518153 2742147 90410..91738 1 NC_005362.1 hypothetical protein 91738 2742147 LJ0067 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964083.1 90410 D 257314 CDS NP_964084.1 42518154 2743414 91728..92549 1 NC_005362.1 hypothetical protein 92549 2743414 LJ0068 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964084.1 91728 D 257314 CDS NP_964085.1 42518155 2743008 92555..93352 1 NC_005362.1 contains metallo-beta-lactamase superfamily region; hypothetical protein 93352 2743008 LJ0069 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964085.1 92555 D 257314 CDS NP_964086.1 42518156 2741926 93436..94656 1 NC_005362.1 serine protease do-like HtrA 94656 2741926 LJ0070 Lactobacillus johnsonii NCC 533 serine protease do-like HtrA NP_964086.1 93436 D 257314 CDS NP_964087.1 42518157 2742300 95167..95646 1 NC_005362.1 contains DUF163 domain; SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 95646 2742300 LJ0071 Lactobacillus johnsonii NCC 533 rRNA large subunit methyltransferase NP_964087.1 95167 D 257314 CDS NP_964088.1 42518158 2742027 complement(95647..96300) 1 NC_005362.1 ABC transporter permease component 96300 2742027 LJ0072 Lactobacillus johnsonii NCC 533 ABC transporter permease component NP_964088.1 95647 R 257314 CDS NP_964089.1 42518159 2743430 complement(96312..97658) 1 NC_005362.1 ABC transporter ATPase component 97658 2743430 LJ0073 Lactobacillus johnsonii NCC 533 ABC transporter ATPase component NP_964089.1 96312 R 257314 CDS NP_964090.1 42518160 2742913 complement(97633..98196) 1 NC_005362.1 hypothetical protein 98196 2742913 LJ0074 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964090.1 97633 R 257314 CDS NP_964091.1 42518161 2742899 98433..99359 1 NC_005362.1 contains transcriptional regulator helix-turn-helix domain, araC family; hypothetical protein 99359 2742899 LJ0075 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964091.1 98433 D 257314 CDS NP_964092.1 42518162 2743070 complement(99394..100284) 1 NC_005362.1 putative metalloprotease; heat shock protein HtpX 100284 2743070 LJ0076 Lactobacillus johnsonii NCC 533 heat shock protein HtpX NP_964092.1 99394 R 257314 CDS NP_964093.1 42518163 2741970 complement(100293..100850) 1 NC_005362.1 LemA-like protein 100850 2741970 LJ0077 Lactobacillus johnsonii NCC 533 LemA-like protein NP_964093.1 100293 R 257314 CDS NP_964094.1 42518164 2742269 complement(100966..102060) 1 NC_005362.1 hypothetical protein 102060 2742269 LJ0078 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964094.1 100966 R 257314 CDS NP_964095.1 42518165 2743763 102236..102646 1 NC_005362.1 hypothetical protein 102646 2743763 LJ0079 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964095.1 102236 D 257314 CDS NP_964096.1 42518166 2743330 103041..103571 1 NC_005362.1 hypothetical protein 103571 2743330 LJ0080 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964096.1 103041 D 257314 CDS NP_964097.1 42518167 2743270 104036..105343 1 NC_005362.1 contains glycosyl transferase family 2 region; hypothetical protein 105343 2743270 LJ0081 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964097.1 104036 D 257314 CDS NP_964098.1 42518168 2743487 105353..106477 1 NC_005362.1 contains glycosyl transferase family 8 region; hypothetical protein 106477 2743487 LJ0082 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964098.1 105353 D 257314 CDS NP_964099.1 42518169 2741876 106592..107236 1 NC_005362.1 hypothetical protein 107236 2741876 LJ0083 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964099.1 106592 D 257314 CDS NP_964100.1 42518170 2742748 107238..108167 1 NC_005362.1 contains HNH site-specific endonuclease domain; hypothetical protein 108167 2742748 LJ0084 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964100.1 107238 D 257314 CDS NP_964101.1 42518171 2742673 complement(108250..108516) 1 NC_005362.1 hypothetical protein 108516 2742673 LJ0085 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964101.1 108250 R 257314 CDS NP_964102.1 42518172 2742970 complement(108770..109528) 1 NC_005362.1 ABC transporter ATPase component 109528 2742970 LJ0086 Lactobacillus johnsonii NCC 533 ABC transporter ATPase component NP_964102.1 108770 R 257314 CDS NP_964103.1 42518173 2743082 complement(109518..111131) 1 NC_005362.1 ABC transporter permease component 111131 2743082 LJ0087 Lactobacillus johnsonii NCC 533 ABC transporter permease component NP_964103.1 109518 R 257314 CDS NP_964104.1 42518174 2742464 complement(111467..112093) 1 NC_005362.1 3-methyladenine DNA glycosylase 112093 2742464 LJ0088 Lactobacillus johnsonii NCC 533 3-methyladenine DNA glycosylase NP_964104.1 111467 R 257314 CDS NP_964105.1 42518175 2742375 112170..112532 1 NC_005362.1 hypothetical protein 112532 2742375 LJ0089 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964105.1 112170 D 257314 CDS NP_964106.1 42518176 2743638 complement(112529..113311) 1 NC_005362.1 contains membrane protein TerC domain; hypothetical protein 113311 2743638 LJ0090 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964106.1 112529 R 257314 CDS NP_964107.1 42518177 2742694 complement(113298..113534) 1 NC_005362.1 methylated DNA-protein cysteine methyltransferase DNA binding subunit 113534 2742694 LJ0091 Lactobacillus johnsonii NCC 533 methylated DNA-protein cysteine methyltransferase DNA binding subunit NP_964107.1 113298 R 257314 CDS NP_964108.1 42518178 2742225 complement(113494..113829) 1 NC_005362.1 methylated DNA-protein cysteine methyltransferase ribonuclease-like subunit 113829 2742225 LJ0092 Lactobacillus johnsonii NCC 533 methylated DNA-protein cysteine methyltransferase ribonuclease-like subunit NP_964108.1 113494 R 257314 CDS NP_964109.1 42518179 2743545 complement(113946..114659) 1 NC_005362.1 contains SIR2 domain; Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 114659 2743545 LJ0093 Lactobacillus johnsonii NCC 533 NAD-dependent deacetylase NP_964109.1 113946 R 257314 CDS NP_964110.1 42518180 2743210 114786..115262 1 NC_005362.1 hypothetical protein 115262 2743210 LJ0094 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964110.1 114786 D 257314 CDS NP_964111.1 42518181 2742014 complement(115330..116799) 1 NC_005362.1 cardiolipinsynthetase 116799 2742014 LJ0095 Lactobacillus johnsonii NCC 533 cardiolipinsynthetase NP_964111.1 115330 R 257314 CDS NP_964112.1 42518182 2743374 complement(116804..117511) 1 NC_005362.1 contains zinc protease domain; hypothetical protein 117511 2743374 LJ0096 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964112.1 116804 R 257314 CDS NP_964113.1 42518183 2742077 complement(117535..118461) 1 NC_005362.1 hypothetical protein 118461 2742077 LJ0097 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964113.1 117535 R 257314 CDS NP_964114.1 42518184 2742623 118550..119281 1 NC_005362.1 contains RNase H domain; hypothetical protein 119281 2742623 LJ0098 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964114.1 118550 D 257314 CDS NP_964115.1 42518185 2741866 complement(119742..120710) 1 NC_005362.1 hypothetical protein 120710 2741866 LJ0099 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964115.1 119742 R 257314 CDS NP_964116.1 42518186 2743098 120833..121663 1 NC_005362.1 contains glycosyl transferase family 2 region; hypothetical protein 121663 2743098 LJ0100 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964116.1 120833 D 257314 CDS NP_964117.1 42518187 2741910 121688..122350 1 NC_005362.1 contains alpha/beta hydrolase fold domain; hypothetical protein 122350 2741910 LJ0101 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964117.1 121688 D 257314 CDS NP_964118.1 42518188 2743628 122437..122799 1 NC_005362.1 hypothetical protein 122799 2743628 LJ0102 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964118.1 122437 D 257314 CDS NP_964119.1 42518189 2743683 122882..123871 1 NC_005362.1 phosphoribosylpyrophosphate synthetase 123871 2743683 LJ0103 Lactobacillus johnsonii NCC 533 phosphoribosylpyrophosphate synthetase NP_964119.1 122882 D 257314 CDS NP_964120.1 42518190 2743692 124168..125523 1 NC_005362.1 amino acid permease 125523 2743692 LJ0104 Lactobacillus johnsonii NCC 533 amino acid permease NP_964120.1 124168 D 257314 CDS NP_964121.1 42518191 2743286 125688..126347 1 NC_005362.1 contains bacterial regulatory protein tetR domain; hypothetical protein 126347 2743286 LJ0105 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964121.1 125688 D 257314 CDS NP_964122.1 42518192 2742779 126670..127209 1 NC_005362.1 hypothetical protein 127209 2742779 LJ0106 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964122.1 126670 D 257314 CDS NP_964123.1 42518193 2743367 complement(127496..129022) 1 NC_005362.1 hypothetical protein 129022 2743367 LJ0107 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964123.1 127496 R 257314 CDS NP_964124.1 42518194 2743323 129182..130267 1 NC_005362.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 130267 ddl 2743323 ddl Lactobacillus johnsonii NCC 533 D-alanyl-alanine synthetase A NP_964124.1 129182 D 257314 CDS NP_964125.1 42518195 2743301 130297..131013 1 NC_005362.1 contains chromosome segregation ATPase domain; hypothetical protein 131013 2743301 LJ0109 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964125.1 130297 D 257314 CDS NP_964126.1 42518196 2743191 complement(131046..132617) 1 NC_005362.1 contains sodium/hydrogen exchanger family domain; hypothetical protein 132617 2743191 LJ0110 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964126.1 131046 R 257314 CDS NP_964127.1 42518197 2742725 132722..133390 1 NC_005362.1 hypothetical protein 133390 2742725 LJ0111 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964127.1 132722 D 257314 CDS NP_964128.1 42518198 2741853 133353..133829 1 NC_005362.1 hypothetical protein 133829 2741853 LJ0112 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964128.1 133353 D 257314 CDS NP_964129.1 42518199 2742823 133826..134587 1 NC_005362.1 hypothetical protein 134587 2742823 LJ0113 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964129.1 133826 D 257314 CDS NP_964130.1 42518200 2742879 134610..135428 1 NC_005362.1 contains acetyl esterase domain; hypothetical protein 135428 2742879 LJ0114 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964130.1 134610 D 257314 CDS NP_964131.1 42518201 2743194 complement(135510..138569) 1 NC_005362.1 contains glycosyl hydrolases family 31 domain; hypothetical protein 138569 2743194 LJ0115 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964131.1 135510 R 257314 CDS NP_964132.1 42518202 2742483 138729..139445 1 NC_005362.1 contains bacterial regulatory gntR domain; hypothetical protein 139445 2742483 LJ0116 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964132.1 138729 D 257314 CDS NP_964133.1 42518203 2742404 139466..140632 1 NC_005362.1 putative tagatose-6-phosphate ketose/aldose isomerase 140632 2742404 LJ0117 Lactobacillus johnsonii NCC 533 putative tagatose-6-phosphate ketose/aldose isomerase NP_964133.1 139466 D 257314 CDS NP_964134.1 42518204 2741852 140694..141851 1 NC_005362.1 contains N-acetylglucosamine-6-phosphate deacetylase domain; hypothetical protein 141851 2741852 LJ0118 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964134.1 140694 D 257314 CDS NP_964135.1 42518205 2742048 141989..142477 1 NC_005362.1 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIB, mannose specific 142477 2742048 LJ0119 Lactobacillus johnsonii NCC 533 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIB, mannose specific NP_964135.1 141989 D 257314 CDS NP_964136.1 42518206 2742012 142489..143406 1 NC_005362.1 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, mannose specific 143406 2742012 LJ0120 Lactobacillus johnsonii NCC 533 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, mannose specific NP_964136.1 142489 D 257314 CDS NP_964137.1 42518207 2743452 143396..144211 1 NC_005362.1 phosphoenolpyruvate-dependent sugar phosphotransferase system EIID, mannose specific 144211 2743452 LJ0121 Lactobacillus johnsonii NCC 533 phosphoenolpyruvate-dependent sugar phosphotransferase system EIID, mannose specific NP_964137.1 143396 D 257314 CDS NP_964138.1 42518208 2742193 144235..144633 1 NC_005362.1 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA, mannose specific 144633 2742193 LJ0122 Lactobacillus johnsonii NCC 533 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA, mannose specific NP_964138.1 144235 D 257314 CDS NP_964139.1 42518209 2743566 144789..145985 1 NC_005362.1 hypothetical protein 145985 2743566 LJ0123 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964139.1 144789 D 257314 CDS NP_964140.1 42518210 2743002 complement(146032..146481) 1 NC_005362.1 nucleoside 2-deoxyribosyltransferase 146481 2743002 LJ0124 Lactobacillus johnsonii NCC 533 nucleoside 2-deoxyribosyltransferase NP_964140.1 146032 R 257314 CDS NP_964141.1 42518211 2743212 146508..147155 1 NC_005362.1 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA, galactitol/fructose specific 147155 2743212 LJ0125 Lactobacillus johnsonii NCC 533 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA, galactitol/fructose specific NP_964141.1 146508 D 257314 CDS NP_964142.1 42518212 2743060 complement(147200..147925) 1 NC_005362.1 contains bacterial regulatory gntR domain; hypothetical protein 147925 2743060 LJ0126 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964142.1 147200 R 257314 CDS NP_964143.1 42518213 2743643 complement(147934..148737) 1 NC_005362.1 contains protein tyrosine/serine phosphatase domain; hypothetical protein 148737 2743643 LJ0127 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964143.1 147934 R 257314 CDS NP_964144.1 42518214 2743478 148911..149405 1 NC_005362.1 universal stress protein family region; hypothetical protein 149405 2743478 LJ0128 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964144.1 148911 D 257314 CDS NP_964145.1 42518215 2743021 149805..150737 1 NC_005362.1 similar to phosphonates solute-binding protein; hypothetical protein 150737 2743021 LJ0129 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964145.1 149805 D 257314 CDS NP_964146.1 42518216 2742626 150845..151630 1 NC_005362.1 phosphate/phosphonate ABC transporter ATPase component 151630 2742626 LJ0130 Lactobacillus johnsonii NCC 533 phosphate/phosphonate ABC transporter ATPase component NP_964146.1 150845 D 257314 CDS NP_964147.1 42518217 2741871 151623..152426 1 NC_005362.1 phosphate/phosphonate ABC transporter permease component 152426 2741871 LJ0131 Lactobacillus johnsonii NCC 533 phosphate/phosphonate ABC transporter permease component NP_964147.1 151623 D 257314 CDS NP_964148.1 42518218 2742150 152426..153238 1 NC_005362.1 phosphate/phosphonate ABC transporter permease component 153238 2742150 LJ0132 Lactobacillus johnsonii NCC 533 phosphate/phosphonate ABC transporter permease component NP_964148.1 152426 D 257314 CDS NP_964149.1 42518219 2743353 153391..153873 1 NC_005362.1 hypothetical protein 153873 2743353 LJ0133 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964149.1 153391 D 257314 CDS NP_964150.1 42518220 2742588 153926..155320 1 NC_005362.1 hypothetical protein 155320 2742588 LJ0134 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964150.1 153926 D 257314 CDS NP_964151.1 42518221 2743544 155381..157330 1 NC_005362.1 asparagine synthase 157330 2743544 LJ0135 Lactobacillus johnsonii NCC 533 asparagine synthase NP_964151.1 155381 D 257314 CDS NP_964152.1 42518222 2742050 157360..158691 1 NC_005362.1 hypothetical protein 158691 2742050 LJ0136 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964152.1 157360 D 257314 CDS NP_964153.1 42518223 2743610 158901..161111 1 NC_005362.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 161111 2743610 LJ0137 Lactobacillus johnsonii NCC 533 anaerobic ribonucleoside triphosphate reductase NP_964153.1 158901 D 257314 CDS NP_964154.1 42518224 2743415 161111..161824 1 NC_005362.1 anaerobic ribonucleoside-triphosphate reductase activating protein 161824 2743415 LJ0138 Lactobacillus johnsonii NCC 533 anaerobic ribonucleoside-triphosphate reductase activating protein NP_964154.1 161111 D 257314 CDS NP_964155.1 42518225 2742406 161879..162469 1 NC_005362.1 contains DUF59 domain; hypothetical protein 162469 2742406 LJ0139 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964155.1 161879 D 257314 CDS NP_964156.1 42518226 2743634 162469..163665 1 NC_005362.1 hypothetical protein 163665 2743634 LJ0140 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964156.1 162469 D 257314 CDS NP_964157.1 42518227 2742069 163769..164986 1 NC_005362.1 major facilitator superfamily permease 164986 2742069 LJ0141 Lactobacillus johnsonii NCC 533 major facilitator superfamily permease NP_964157.1 163769 D 257314 CDS NP_964158.1 42518228 2741893 165105..166100 1 NC_005362.1 catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in Streptococcus pyogenes there are two paralogs of tagatose-bisphosphate aldolase, encoded by lacD1 and lacD2; expression of lacD1 is highly regulated by environmental conditions while lacD2 specializes in an efficient utilization of carbohydrate sources; tagatose 1,6-diphosphate aldolase 166100 2741893 LJ0142 Lactobacillus johnsonii NCC 533 tagatose 1,6-diphosphate aldolase NP_964158.1 165105 D 257314 CDS NP_964159.1 42518229 2743612 166235..169183 1 NC_005362.1 hypothetical protein 169183 2743612 LJ0143 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964159.1 166235 D 257314 CDS NP_964160.1 42518230 2742821 complement(169257..170015) 1 NC_005362.1 contains transcriptional regulator helix-turn-helix domain; hypothetical protein 170015 2742821 LJ0144 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964160.1 169257 R 257314 CDS NP_964161.1 42518231 2742405 170137..171063 1 NC_005362.1 fructose-1-phosphate kinase 171063 2742405 LJ0145 Lactobacillus johnsonii NCC 533 fructose-1-phosphate kinase NP_964161.1 170137 D 257314 CDS NP_964162.1 42518232 2743650 171081..173018 1 NC_005362.1 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, fructose specific 173018 2743650 LJ0146 Lactobacillus johnsonii NCC 533 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, fructose specific NP_964162.1 171081 D 257314 CDS NP_964163.1 42518233 2742930 173133..175082 1 NC_005362.1 endopeptidase O 175082 2742930 LJ0147 Lactobacillus johnsonii NCC 533 endopeptidase O NP_964163.1 173133 D 257314 CDS NP_964164.1 42518234 2743242 175224..176930 1 NC_005362.1 hypothetical protein 176930 2743242 LJ0148 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964164.1 175224 D 257314 CDS NP_964165.1 42518235 2742372 177128..178786 1 NC_005362.1 contains phosphoenolpyruvate carboxykinase domain; hypothetical protein 178786 2742372 LJ0149 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964165.1 177128 D 257314 CDS NP_964166.1 42518236 2742205 complement(178883..180934) 1 NC_005362.1 contains K+ potassium transporter domain; hypothetical protein 180934 2742205 LJ0150 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964166.1 178883 R 257314 CDS NP_964167.1 42518237 2743517 complement(181083..183080) 1 NC_005362.1 contains K+ potassium transporter domain; hypothetical protein 183080 2743517 LJ0151 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964167.1 181083 R 257314 CDS NP_964168.1 42518238 2742785 complement(183220..183639) 1 NC_005362.1 hypothetical protein 183639 2742785 LJ0152 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964168.1 183220 R 257314 CDS NP_964169.1 42518239 2743551 complement(183726..184790) 1 NC_005362.1 contains TPR-repeat domain; hypothetical protein 184790 2743551 LJ0153 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964169.1 183726 R 257314 CDS NP_964170.1 42518240 2742331 185219..185458 1 NC_005362.1 hypothetical protein 185458 2742331 LJ0154 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964170.1 185219 D 257314 CDS NP_964171.1 42518241 2742169 185662..187758 1 NC_005362.1 contains mannosyl-glycoprotein endo-beta-N-acetylglucosamidase domain; hypothetical protein 187758 2742169 LJ0155 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964171.1 185662 D 257314 CDS NP_964172.1 42518242 2743012 187813..189360 1 NC_005362.1 contains glycosyl hydrolases family 25 domain; hypothetical protein 189360 2743012 LJ0156 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964172.1 187813 D 257314 CDS NP_964173.1 42518243 2743018 189311..189982 1 NC_005362.1 hypothetical protein 189982 2743018 LJ0157 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964173.1 189311 D 257314 CDS NP_964174.1 42518244 2743507 190093..190905 1 NC_005362.1 contains pfkB family carbohydrate kinase domain; hypothetical protein 190905 2743507 LJ0158 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964174.1 190093 D 257314 CDS NP_964175.1 42518245 2742923 190992..192818 1 NC_005362.1 contains potassium channel domain; hypothetical protein 192818 2742923 LJ0159 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964175.1 190992 D 257314 CDS NP_964176.1 42518246 2741859 complement(192860..193822) 1 NC_005362.1 contains oxidoreductase family, NAD-binding Rossmann domain; hypothetical protein 193822 2741859 LJ0160 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964176.1 192860 R 257314 CDS NP_964177.1 42518247 2743366 complement(193836..194618) 1 NC_005362.1 hypothetical protein 194618 2743366 LJ0161 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964177.1 193836 R 257314 CDS NP_964178.1 42518248 2743729 complement(194639..195466) 1 NC_005362.1 hypothetical protein 195466 2743729 LJ0162 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964178.1 194639 R 257314 CDS NP_964179.1 42518249 2742819 complement(195552..195974) 1 NC_005362.1 hypothetical protein 195974 2742819 LJ0163 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964179.1 195552 R 257314 CDS NP_964180.1 42518250 2742757 196136..196828 1 NC_005362.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 196828 gpmA 2742757 gpmA Lactobacillus johnsonii NCC 533 phosphoglyceromutase NP_964180.1 196136 D 257314 CDS NP_964181.1 42518251 2741952 196894..197175 1 NC_005362.1 hypothetical protein 197175 2741952 LJ0165 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964181.1 196894 D 257314 CDS NP_964182.1 42518252 2742239 complement(197771..198028) 1 NC_005362.1 30S ribosomal protein S14-3 198028 2742239 LJ0166 Lactobacillus johnsonii NCC 533 30S ribosomal protein S14-3 NP_964182.1 197771 R 257314 CDS NP_964183.1 42518253 2741933 198212..198649 1 NC_005362.1 hypothetical protein 198649 2741933 LJ0167 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964183.1 198212 D 257314 CDS NP_964184.1 42518254 2741950 198669..199601 1 NC_005362.1 bactoprenol glucosyl transferase 199601 2741950 LJ0168 Lactobacillus johnsonii NCC 533 bactoprenol glucosyl transferase NP_964184.1 198669 D 257314 CDS NP_964185.1 42518255 2742388 199839..200552 1 NC_005362.1 hypothetical protein 200552 2742388 LJ0169 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964185.1 199839 D 257314 CDS NP_964186.1 42518256 2742196 200624..201487 1 NC_005362.1 contains integral membrane protein DUF6 domain; hypothetical protein 201487 2742196 LJ0170 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964186.1 200624 D 257314 CDS NP_964187.1 42518257 2741969 201778..202659 1 NC_005362.1 similar to uncharacterized enzymes related to aldose 1-epimerase; hypothetical protein 202659 2741969 LJ0171 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964187.1 201778 D 257314 CDS NP_964188.1 42518258 2743627 202788..203897 1 NC_005362.1 similar to transcriptional regulator lytR; hypothetical protein 203897 2743627 LJ0172 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964188.1 202788 D 257314 CDS NP_964189.1 42518259 2742106 203897..204517 1 NC_005362.1 contains DUF205 domain; membrane protein 204517 2742106 LJ0173 Lactobacillus johnsonii NCC 533 membrane protein NP_964189.1 203897 D 257314 CDS NP_964190.1 42518260 2742123 204514..207447 1 NC_005362.1 hypothetical protein 207447 2742123 LJ0174 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964190.1 204514 D 257314 CDS NP_964191.1 42518261 2742997 207687..208967 1 NC_005362.1 tyrosyl-tRNA synthetase 208967 2742997 LJ0175 Lactobacillus johnsonii NCC 533 tyrosyl-tRNA synthetase NP_964191.1 207687 D 257314 CDS NP_964192.1 42518262 2743324 209216..210529 1 NC_005362.1 aminopeptidase C 210529 2743324 LJ0176 Lactobacillus johnsonii NCC 533 aminopeptidase C NP_964192.1 209216 D 257314 CDS NP_964193.1 42518263 2743141 210545..211198 1 NC_005362.1 contains HD superfamily hydrolase domain; hypothetical protein 211198 2743141 LJ0177 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964193.1 210545 D 257314 CDS NP_964194.1 42518264 2742687 complement(211269..212579) 1 NC_005362.1 aminopeptidase C 212579 2742687 LJ0178 Lactobacillus johnsonii NCC 533 aminopeptidase C NP_964194.1 211269 R 257314 CDS NP_964195.1 42518265 2743216 212742..213365 1 NC_005362.1 hypothetical protein 213365 2743216 LJ0179 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964195.1 212742 D 257314 CDS NP_964196.1 42518266 2743274 213365..213826 1 NC_005362.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 213826 greA 2743274 greA Lactobacillus johnsonii NCC 533 transcription elongation factor GreA NP_964196.1 213365 D 257314 CDS NP_964197.1 42518267 2743593 complement(213872..214321) 1 NC_005362.1 contains Hsp20/alpha crystallin domain; hypothetical protein 214321 2743593 LJ0181 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964197.1 213872 R 257314 CDS NP_964198.1 42518268 2743722 complement(214451..215899) 1 NC_005362.1 6-phospho-beta-glucosidase 215899 2743722 LJ0182 Lactobacillus johnsonii NCC 533 6-phospho-beta-glucosidase NP_964198.1 214451 R 257314 CDS NP_964199.1 42518269 2742782 216097..216594 1 NC_005362.1 hypothetical protein 216594 2742782 LJ0183 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964199.1 216097 D 257314 CDS NP_964200.1 42518270 2743088 216617..217969 1 NC_005362.1 required for cellobiose uptake and metabolism; cellobiose phosphotransferase system IIC component 217969 celD 2743088 celD Lactobacillus johnsonii NCC 533 cellobiose phosphotransferase system IIC component NP_964200.1 216617 D 257314 CDS NP_964201.1 42518271 2743352 218045..218743 1 NC_005362.1 contains bacterial regulatory gntR domain; hypothetical protein 218743 2743352 LJ0185 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964201.1 218045 D 257314 CDS NP_964202.1 42518272 2743356 complement(218844..220121) 1 NC_005362.1 transposase 220121 2743356 LJ0186 Lactobacillus johnsonii NCC 533 transposase NP_964202.1 218844 R 257314 CDS NP_964203.1 42518273 2743440 complement(220263..220670) 1 NC_005362.1 hypothetical protein 220670 2743440 LJ0187 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964203.1 220263 R 257314 CDS NP_964204.1 42518274 2742480 complement(220742..222235) 1 NC_005362.1 6-phospho-beta-glucosidase 222235 2742480 LJ0188 Lactobacillus johnsonii NCC 533 6-phospho-beta-glucosidase NP_964204.1 220742 R 257314 CDS NP_964205.1 42518275 2742384 complement(222302..223027) 1 NC_005362.1 contains bacterial regulatory gntR domain; hypothetical protein 223027 2742384 LJ0189 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964205.1 222302 R 257314 CDS NP_964206.1 42518276 2742854 complement(223027..223353) 1 NC_005362.1 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA, cellobiose specific 223353 2742854 LJ0190 Lactobacillus johnsonii NCC 533 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA, cellobiose specific NP_964206.1 223027 R 257314 CDS NP_964207.1 42518277 2741894 complement(223447..223695) 1 NC_005362.1 hypothetical protein 223695 2741894 LJ0191 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964207.1 223447 R 257314 CDS NP_964208.1 42518278 2743448 complement(223700..224023) 1 NC_005362.1 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIB, cellobiose specific 224023 2743448 LJ0192 Lactobacillus johnsonii NCC 533 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIB, cellobiose specific NP_964208.1 223700 R 257314 CDS NP_964209.1 42518279 2743598 complement(224170..225600) 1 NC_005362.1 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, cellobiose specific 225600 2743598 LJ0193 Lactobacillus johnsonii NCC 533 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, cellobiose specific NP_964209.1 224170 R 257314 CDS NP_964210.1 42518280 2743569 complement(225600..226979) 1 NC_005362.1 beta-glucosidase 226979 2743569 LJ0194 Lactobacillus johnsonii NCC 533 beta-glucosidase NP_964210.1 225600 R 257314 CDS NP_964211.1 42518281 2743429 complement(227182..228042) 1 NC_005362.1 contains bacterial regulatory ROK domain; hypothetical protein 228042 2743429 LJ0195 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964211.1 227182 R 257314 CDS NP_964212.1 42518282 2743547 228185..228847 1 NC_005362.1 hypothetical protein 228847 2743547 LJ0196 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964212.1 228185 D 257314 CDS NP_964213.1 42518283 2741984 complement(228988..229599) 1 NC_005362.1 contains DUF159 domain; hypothetical protein 229599 2741984 LJ0197 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964213.1 228988 R 257314 CDS NP_964214.1 42518284 2742540 229734..230762 1 NC_005362.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase II 230762 2742540 LJ0198 Lactobacillus johnsonii NCC 533 tryptophanyl-tRNA synthetase II NP_964214.1 229734 D 257314 CDS NP_964215.1 42518285 2741921 230782..231270 1 NC_005362.1 ComE operon protein 2. 231270 2741921 LJ0199 Lactobacillus johnsonii NCC 533 ComE operon protein 2. NP_964215.1 230782 D 257314 CDS NP_964216.1 42518286 2743698 231260..231847 1 NC_005362.1 hypothetical protein 231847 2743698 LJ0200 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964216.1 231260 D 257314 CDS NP_964217.1 42518287 2742144 232146..233177 1 NC_005362.1 contains E1-E2 ATPase domain; hypothetical protein 233177 2742144 LJ0201 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964217.1 232146 D 257314 CDS NP_964218.1 42518288 2742206 233275..235251 1 NC_005362.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 235251 2742206 LJ0202 Lactobacillus johnsonii NCC 533 methionyl-tRNA synthetase NP_964218.1 233275 D 257314 CDS NP_964219.1 42518289 2743136 235251..236024 1 NC_005362.1 contains TatD-related DNase domain; hypothetical protein 236024 2743136 LJ0203 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964219.1 235251 D 257314 CDS NP_964220.1 42518290 2742332 236008..236571 1 NC_005362.1 contains toprim domain; hypothetical protein 236571 2742332 LJ0204 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964220.1 236008 D 257314 CDS NP_964221.1 42518291 2743134 236561..237451 1 NC_005362.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 237451 ksgA 2743134 ksgA Lactobacillus johnsonii NCC 533 dimethyladenosine transferase NP_964221.1 236561 D 257314 CDS NP_964222.1 42518292 2742662 237527..237766 1 NC_005362.1 veg protein 237766 2742662 LJ0206 Lactobacillus johnsonii NCC 533 veg protein NP_964222.1 237527 D 257314 CDS NP_964223.1 42518293 2743516 237884..238720 1 NC_005362.1 contains phosphoribosyl transferase domain; pur operon repressor 238720 2743516 LJ0207 Lactobacillus johnsonii NCC 533 pur operon repressor NP_964223.1 237884 D 257314 CDS NP_964224.1 42518294 2742681 238768..240153 1 NC_005362.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 240153 glmU 2742681 glmU Lactobacillus johnsonii NCC 533 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase NP_964224.1 238768 D 257314 CDS NP_964225.1 42518295 2742473 240264..241235 1 NC_005362.1 ribose-phosphate pyrophosphokinase 241235 2742473 LJ0209 Lactobacillus johnsonii NCC 533 ribose-phosphate pyrophosphokinase NP_964225.1 240264 D 257314 CDS NP_964226.1 42518296 2743496 241388..242332 1 NC_005362.1 contains bacterial regulatory lacI domain; hypothetical protein 242332 2743496 LJ0210 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964226.1 241388 D 257314 CDS NP_964227.1 42518297 2742842 242437..244092 1 NC_005362.1 contains alpha amylase catalytic domain; hypothetical protein 244092 2742842 LJ0211 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964227.1 242437 D 257314 CDS NP_964228.1 42518298 2742827 244112..245836 1 NC_005362.1 maltogenic amylase or neopullulanase 245836 2742827 LJ0212 Lactobacillus johnsonii NCC 533 maltogenic amylase or neopullulanase NP_964228.1 244112 D 257314 CDS NP_964229.1 42518299 2742023 245988..248261 1 NC_005362.1 maltose phosphorylase 248261 2742023 LJ0213 Lactobacillus johnsonii NCC 533 maltose phosphorylase NP_964229.1 245988 D 257314 CDS NP_964230.1 42518300 2742631 248246..248908 1 NC_005362.1 beta-phosphoglucomutase 248908 2742631 LJ0214 Lactobacillus johnsonii NCC 533 beta-phosphoglucomutase NP_964230.1 248246 D 257314 CDS NP_964231.1 42518301 2742634 248929..250032 1 NC_005362.1 multiple sugar ABC transporter ATPase component 250032 2742634 LJ0215 Lactobacillus johnsonii NCC 533 multiple sugar ABC transporter ATPase component NP_964231.1 248929 D 257314 CDS NP_964232.1 42518302 2743539 250144..251361 1 NC_005362.1 contains bacterial extracellular solute-binding domain; hypothetical protein 251361 2743539 LJ0216 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964232.1 250144 D 257314 CDS NP_964233.1 42518303 2742561 251398..252753 1 NC_005362.1 multiple sugar ABC transporter permease component 252753 2742561 LJ0217 Lactobacillus johnsonii NCC 533 multiple sugar ABC transporter permease component NP_964233.1 251398 D 257314 CDS NP_964234.1 42518304 2742209 252756..253613 1 NC_005362.1 multiple sugar ABC transporter permease component 253613 2742209 LJ0219 Lactobacillus johnsonii NCC 533 multiple sugar ABC transporter permease component NP_964234.1 252756 D 257314 CDS NP_964235.1 42518305 2742335 253689..255305 1 NC_005362.1 glucan 1,6-alpha-glucosidase 255305 2742335 LJ0220 Lactobacillus johnsonii NCC 533 glucan 1,6-alpha-glucosidase NP_964235.1 253689 D 257314 CDS NP_964236.1 42518306 2742750 complement(255343..256707) 1 NC_005362.1 contains HD domain; hypothetical protein 256707 2742750 LJ0221 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964236.1 255343 R 257314 CDS NP_964237.1 42518307 2742751 256802..257239 1 NC_005362.1 hypothetical protein 257239 2742751 LJ0222 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964237.1 256802 D 257314 CDS NP_964238.1 42518308 2741925 257288..257830 1 NC_005362.1 participates in both the initiation and recycling phases of transcription; in the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; DNA-directed RNA polymerase subunit delta 257830 2741925 LJ0223 Lactobacillus johnsonii NCC 533 DNA-directed RNA polymerase subunit delta NP_964238.1 257288 D 257314 CDS NP_964239.1 42518309 2741936 257960..259582 1 NC_005362.1 CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 259582 pyrG 2741936 pyrG Lactobacillus johnsonii NCC 533 CTP synthetase NP_964239.1 257960 D 257314 CDS NP_964240.1 42518310 2742976 259714..260979 1 NC_005362.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 260979 2742976 LJ0225 Lactobacillus johnsonii NCC 533 UDP-N-acetylglucosamine 1-carboxyvinyltransferase NP_964240.1 259714 D 257314 CDS NP_964241.1 42518311 2742868 complement(261071..262399) 1 NC_005362.1 xanthine/uracil permease 262399 2742868 LJ0226 Lactobacillus johnsonii NCC 533 xanthine/uracil permease NP_964241.1 261071 R 257314 CDS NP_964242.1 42518312 2742858 complement(262400..262978) 1 NC_005362.1 Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine; xanthine phosphoribosyltransferase 262978 2742858 LJ0227 Lactobacillus johnsonii NCC 533 xanthine phosphoribosyltransferase NP_964242.1 262400 R 257314 CDS NP_964243.1 42518313 2741980 complement(263190..263966) 1 NC_005362.1 hypothetical protein 263966 2741980 LJ0228 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964243.1 263190 R 257314 CDS NP_964244.1 42518314 2743518 264154..265707 1 NC_005362.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 265707 guaA 2743518 guaA Lactobacillus johnsonii NCC 533 GMP synthase NP_964244.1 264154 D 257314 CDS NP_964245.1 42518315 2743590 265991..266290 1 NC_005362.1 arsenical resistance operon repressor 266290 2743590 LJ0230 Lactobacillus johnsonii NCC 533 arsenical resistance operon repressor NP_964245.1 265991 D 257314 CDS NP_964246.1 42518316 2742679 266364..267401 1 NC_005362.1 contains sodium bile acid symporter domain; hypothetical protein 267401 2742679 LJ0231 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964246.1 266364 D 257314 CDS NP_964247.1 42518317 2743354 267401..267802 1 NC_005362.1 arsenate reductase 267802 2743354 LJ0232 Lactobacillus johnsonii NCC 533 arsenate reductase NP_964247.1 267401 D 257314 CDS NP_964248.1 42518318 2742063 268355..268588 1 NC_005362.1 hypothetical protein 268588 2742063 LJ0233 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964248.1 268355 D 257314 CDS NP_964249.1 42518319 2742020 268614..269132 1 NC_005362.1 hypothetical protein 269132 2742020 LJ0234 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964249.1 268614 D 257314 CDS NP_964250.1 42518320 2742025 269219..269422 1 NC_005362.1 hypothetical protein 269422 2742025 LJ0234b Lactobacillus johnsonii NCC 533 hypothetical protein NP_964250.1 269219 D 257314 CDS NP_964251.1 42518321 2742001 269423..269806 1 NC_005362.1 hypothetical protein 269806 2742001 LJ0235 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964251.1 269423 D 257314 CDS NP_964252.1 42518322 2742152 269849..270670 1 NC_005362.1 contains phage integrase domain; hypothetical protein 270670 2742152 LJ0236 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964252.1 269849 D 257314 CDS NP_964253.1 42518323 2742656 complement(270804..271196) 1 NC_005362.1 hypothetical protein 271196 2742656 LJ0237 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964253.1 270804 R 257314 CDS NP_964254.1 42518324 2741911 271401..272033 1 NC_005362.1 contains bacterial regulatory protein tetR domain; hypothetical protein 272033 2741911 LJ0238 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964254.1 271401 D 257314 CDS NP_964255.1 42518325 2742794 272194..272703 1 NC_005362.1 hypothetical protein 272703 2742794 LJ0239 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964255.1 272194 D 257314 CDS NP_964256.1 42518326 2742777 complement(273128..274153) 1 NC_005362.1 contains transcriptional regulator helix-turn-helix domain; hypothetical protein 274153 2742777 LJ0240 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964256.1 273128 R 257314 CDS NP_964257.1 42518327 2743015 complement(274192..274788) 1 NC_005362.1 contains NAD(P)H dehydrogenase (quinone) domain; hypothetical protein 274788 2743015 LJ0241 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964257.1 274192 R 257314 CDS NP_964258.1 42518328 2743123 complement(274790..275323) 1 NC_005362.1 contains bacterial regulatory protein tetR domain; hypothetical protein 275323 2743123 LJ0242 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964258.1 274790 R 257314 CDS NP_964259.1 42518329 2743322 275534..275947 1 NC_005362.1 hypothetical protein 275947 2743322 LJ0243 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964259.1 275534 D 257314 CDS NP_964260.1 42518330 2743020 276509..277663 1 NC_005362.1 hypothetical protein 277663 2743020 LJ0244 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964260.1 276509 D 257314 CDS NP_964261.1 42518331 2743188 277846..278691 1 NC_005362.1 ABC transporter ATPase component 278691 2743188 LJ0245 Lactobacillus johnsonii NCC 533 ABC transporter ATPase component NP_964261.1 277846 D 257314 CDS NP_964262.1 42518332 2743157 278691..279557 1 NC_005362.1 hypothetical protein 279557 2743157 LJ0246 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964262.1 278691 D 257314 CDS NP_964263.1 42518333 2743221 279547..279996 1 NC_005362.1 hypothetical protein 279996 2743221 LJ0247 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964263.1 279547 D 257314 CDS NP_964264.1 42518334 2742057 279998..280387 1 NC_005362.1 hypothetical protein 280387 2742057 LJ0248 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964264.1 279998 D 257314 CDS NP_964265.1 42518335 2742079 280412..280915 1 NC_005362.1 contains acetyltransferase (GNAT) domain; hypothetical protein 280915 2742079 LJ0249 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964265.1 280412 D 257314 CDS NP_964266.1 42518336 2743439 280973..281113 1 NC_005362.1 possible metallothionein; hypothetical protein 281113 2743439 LJ0249b Lactobacillus johnsonii NCC 533 hypothetical protein NP_964266.1 280973 D 257314 CDS NP_964267.1 42518337 2742458 complement(281182..282180) 1 NC_005362.1 contains zinc-binding dehydrogenase domain; hypothetical protein 282180 2742458 LJ0250 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964267.1 281182 R 257314 CDS NP_964268.1 42518338 2743433 complement(282158..282607) 1 NC_005362.1 contains UPF0074 domain; hypothetical protein 282607 2743433 LJ0251 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964268.1 282158 R 257314 CDS NP_964269.1 42518339 2742619 282916..283404 1 NC_005362.1 methylated DNA-protein cysteine methyltransferase 283404 2742619 LJ0252 Lactobacillus johnsonii NCC 533 methylated DNA-protein cysteine methyltransferase NP_964269.1 282916 D 257314 CDS NP_964270.1 42518340 2743349 complement(284067..284582) 1 NC_005362.1 hypothetical protein 284582 2743349 LJ0253 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964270.1 284067 R 257314 CDS NP_964271.1 42518341 2743520 284895..285155 1 NC_005362.1 hypothetical protein 285155 2743520 LJ0254 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964271.1 284895 D 257314 CDS NP_964272.1 42518342 2743091 complement(285202..285915) 1 NC_005362.1 hypothetical protein 285915 2743091 LJ0255 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964272.1 285202 R 257314 CDS NP_964273.1 42518343 2743567 286002..286454 1 NC_005362.1 hypothetical protein 286454 2743567 LJ0256 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964273.1 286002 D 257314 CDS NP_964274.1 42518344 2743071 complement(286574..287332) 1 NC_005362.1 nitro/flavin reductase 287332 2743071 LJ0257 Lactobacillus johnsonii NCC 533 nitro/flavin reductase NP_964274.1 286574 R 257314 CDS NP_964275.1 42518345 2743205 complement(287473..288888) 1 NC_005362.1 dipeptidase 288888 2743205 LJ0258 Lactobacillus johnsonii NCC 533 dipeptidase NP_964275.1 287473 R 257314 CDS NP_964276.1 42518346 2743033 complement(288966..289793) 1 NC_005362.1 raffinose operon transcriptional regulator 289793 2743033 LJ0259 Lactobacillus johnsonii NCC 533 raffinose operon transcriptional regulator NP_964276.1 288966 R 257314 CDS NP_964277.1 42518347 2743193 290014..291975 1 NC_005362.1 raffinose permease 291975 2743193 LJ0260 Lactobacillus johnsonii NCC 533 raffinose permease NP_964277.1 290014 D 257314 CDS NP_964278.1 42518348 2742754 291959..294157 1 NC_005362.1 alpha-galactosidase 294157 2742754 LJ0261 Lactobacillus johnsonii NCC 533 alpha-galactosidase NP_964278.1 291959 D 257314 CDS NP_964279.1 42518349 2742712 294169..295611 1 NC_005362.1 sucrose phosphorylase 295611 2742712 LJ0262 Lactobacillus johnsonii NCC 533 sucrose phosphorylase NP_964279.1 294169 D 257314 CDS NP_964280.1 42518350 2742724 295759..296994 1 NC_005362.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 296994 glyA 2742724 glyA Lactobacillus johnsonii NCC 533 serine hydroxymethyltransferase NP_964280.1 295759 D 257314 CDS NP_964281.1 42518351 2742552 297280..298272 1 NC_005362.1 hypothetical protein 298272 2742552 LJ0264 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964281.1 297280 D 257314 CDS NP_964282.1 42518352 2742717 298269..299168 1 NC_005362.1 ABC transporter permease component 299168 2742717 LJ0265 Lactobacillus johnsonii NCC 533 ABC transporter permease component NP_964282.1 298269 D 257314 CDS NP_964283.1 42518353 2743626 299161..299925 1 NC_005362.1 ABC transporter ATPase component 299925 2743626 LJ0266 Lactobacillus johnsonii NCC 533 ABC transporter ATPase component NP_964283.1 299161 D 257314 CDS NP_964284.1 42518354 2742641 300030..301628 1 NC_005362.1 contains amino acid permease domain; hypothetical protein 301628 2742641 LJ0267 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964284.1 300030 D 257314 CDS NP_964285.1 42518355 2742310 301745..301996 1 NC_005362.1 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 type B 301996 rpmE2 2742310 rpmE2 Lactobacillus johnsonii NCC 533 50S ribosomal protein L31 type B NP_964285.1 301745 D 257314 CDS NP_964286.1 42518356 2743623 302159..303526 1 NC_005362.1 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase 303526 2743623 LJ0269 Lactobacillus johnsonii NCC 533 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase NP_964286.1 302159 D 257314 CDS NP_964287.1 42518357 2742528 303542..304996 1 NC_005362.1 RNA helicase 304996 2742528 LJ0270 Lactobacillus johnsonii NCC 533 RNA helicase NP_964287.1 303542 D 257314 CDS NP_964288.1 42518358 2743064 305072..305431 1 NC_005362.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 305431 acpS 2743064 acpS Lactobacillus johnsonii NCC 533 4'-phosphopantetheinyl transferase NP_964288.1 305072 D 257314 CDS NP_964289.1 42518359 2741906 305431..306561 1 NC_005362.1 alanine racemase 306561 2741906 LJ0272 Lactobacillus johnsonii NCC 533 alanine racemase NP_964289.1 305431 D 257314 CDS NP_964290.1 42518360 2742861 complement(306626..307306) 1 NC_005362.1 hypothetical protein 307306 2742861 LJ0273 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964290.1 306626 R 257314 CDS NP_964291.1 42518361 2742935 complement(307453..308424) 1 NC_005362.1 L-lactate dehydrogenase 308424 2742935 LJ0274 Lactobacillus johnsonii NCC 533 L-lactate dehydrogenase NP_964291.1 307453 R 257314 CDS NP_964292.1 42518362 2742943 complement(308537..309586) 1 NC_005362.1 transposase 309586 2742943 LJ0275 Lactobacillus johnsonii NCC 533 transposase NP_964292.1 308537 R 257314 CDS NP_964293.1 42518363 2743083 309811..310368 1 NC_005362.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 310368 2743083 LJ0276 Lactobacillus johnsonii NCC 533 peptidyl-tRNA hydrolase NP_964293.1 309811 D 257314 CDS NP_964294.1 42518364 2742905 310370..313867 1 NC_005362.1 transcription-repair coupling factor 313867 2742905 LJ0277 Lactobacillus johnsonii NCC 533 transcription-repair coupling factor NP_964294.1 310370 D 257314 CDS NP_964295.1 42518365 2742789 313885..314127 1 NC_005362.1 contains S4 domain; hypothetical protein 314127 2742789 LJ0278 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964295.1 313885 D 257314 CDS NP_964296.1 42518366 2742281 314216..314593 1 NC_005362.1 hypothetical protein 314593 2742281 LJ0279 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964296.1 314216 D 257314 CDS NP_964297.1 42518367 2743648 314593..314949 1 NC_005362.1 contains S1 RNA binding domain; hypothetical protein 314949 2743648 LJ0280 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964297.1 314593 D 257314 CDS NP_964298.1 42518368 2743288 314972..316267 1 NC_005362.1 contains single-strand binding domain; hypothetical protein 316267 2743288 LJ0281 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964298.1 314972 D 257314 CDS NP_964299.1 42518369 2743608 316351..318477 1 NC_005362.1 cell division protein FtsH-like protein 318477 2743608 LJ0282 Lactobacillus johnsonii NCC 533 cell division protein FtsH-like protein NP_964299.1 316351 D 257314 CDS NP_964300.1 42518370 2742450 318548..321235 1 NC_005362.1 hypothetical protein 321235 2742450 LJ0283 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964300.1 318548 D 257314 CDS NP_964301.1 42518371 2743434 321298..323940 1 NC_005362.1 hypothetical protein 323940 2743434 LJ0284 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964301.1 321298 D 257314 CDS NP_964302.1 42518372 2743435 323994..324869 1 NC_005362.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 324869 hslO 2743435 hslO Lactobacillus johnsonii NCC 533 Hsp33-like chaperonin NP_964302.1 323994 D 257314 CDS NP_964303.1 42518373 2742837 324929..325936 1 NC_005362.1 contains UPF0034 domain; hypothetical protein 325936 2742837 LJ0286 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964303.1 324929 D 257314 CDS NP_964304.1 42518374 2742697 325951..327492 1 NC_005362.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 327492 lysS 2742697 lysS Lactobacillus johnsonii NCC 533 lysyl-tRNA synthetase NP_964304.1 325951 D 257314 CDS NP_964305.1 42518375 2743672 complement(327894..329069) 1 NC_005362.1 Lj965 prophage integrase 329069 2743672 LJ0288 Lactobacillus johnsonii NCC 533 Lj965 prophage integrase NP_964305.1 327894 R 257314 CDS NP_964306.1 42518376 2743277 complement(329225..329749) 1 NC_005362.1 Lj965 prophage superinfection immunity protein 329749 2743277 LJ0289 Lactobacillus johnsonii NCC 533 Lj965 prophage superinfection immunity protein NP_964306.1 329225 R 257314 CDS NP_964307.1 42518377 2742302 complement(329842..330372) 1 NC_005362.1 Lj965 prophage protein 330372 2742302 LJ0290 Lactobacillus johnsonii NCC 533 Lj965 prophage protein NP_964307.1 329842 R 257314 CDS NP_964308.1 42518378 2743548 complement(330483..331268) 1 NC_005362.1 Lj965 prophage protein 331268 2743548 LJ0291 Lactobacillus johnsonii NCC 533 Lj965 prophage protein NP_964308.1 330483 R 257314 CDS NP_964309.1 42518379 2743173 complement(331240..331698) 1 NC_005362.1 Lj965 prophage protein 331698 2743173 LJ0292 Lactobacillus johnsonii NCC 533 Lj965 prophage protein NP_964309.1 331240 R 257314 CDS NP_964310.1 42518380 2742470 complement(331779..332201) 1 NC_005362.1 Lj965 prophage repressor 332201 2742470 LJ0293 Lactobacillus johnsonii NCC 533 Lj965 prophage repressor NP_964310.1 331779 R 257314 CDS NP_964311.1 42518381 2742787 complement(332205..332558) 1 NC_005362.1 Lj965 prophage repressor 332558 2742787 LJ0294 Lactobacillus johnsonii NCC 533 Lj965 prophage repressor NP_964311.1 332205 R 257314 CDS NP_964312.1 42518382 2742733 332731..332934 1 NC_005362.1 Lj965 prophage Cro-repressor 332934 2742733 LJ0294b Lactobacillus johnsonii NCC 533 Lj965 prophage Cro-repressor NP_964312.1 332731 D 257314 CDS NP_964313.1 42518383 2742431 332972..333721 1 NC_005362.1 Lj965 prophage antirepressor 333721 2742431 LJ0295 Lactobacillus johnsonii NCC 533 Lj965 prophage antirepressor NP_964313.1 332972 D 257314 CDS NP_964314.1 42518384 2741967 333733..334011 1 NC_005362.1 Lj928 prophage protein 334011 2741967 LJ0296 Lactobacillus johnsonii NCC 533 Lj928 prophage protein NP_964314.1 333733 D 257314 CDS NP_964315.1 42518385 2742278 334136..334345 1 NC_005362.1 Lj928 prophage protein 334345 2742278 LJ1452b Lactobacillus johnsonii NCC 533 Lj928 prophage protein NP_964315.1 334136 D 257314 CDS NP_964316.1 42518386 2743661 334342..334491 1 NC_005362.1 Lj965 prophage protein 334491 2743661 LJ0296b Lactobacillus johnsonii NCC 533 Lj965 prophage protein NP_964316.1 334342 D 257314 CDS NP_964317.1 42518387 2742534 334860..335225 1 NC_005362.1 Lj965 prophage protein 335225 2742534 LJ0297 Lactobacillus johnsonii NCC 533 Lj965 prophage protein NP_964317.1 334860 D 257314 CDS NP_964318.1 42518388 2743027 335237..336136 1 NC_005362.1 Lj965 prophage protein 336136 2743027 LJ0298 Lactobacillus johnsonii NCC 533 Lj965 prophage protein NP_964318.1 335237 D 257314 CDS NP_964319.1 42518389 2742891 336139..336975 1 NC_005362.1 Lj965 prophage replication protein 336975 2742891 LJ0299 Lactobacillus johnsonii NCC 533 Lj965 prophage replication protein NP_964319.1 336139 D 257314 CDS NP_964320.1 42518390 2742007 336985..337719 1 NC_005362.1 Lj965 prophage replication protein 337719 2742007 LJ0300 Lactobacillus johnsonii NCC 533 Lj965 prophage replication protein NP_964320.1 336985 D 257314 CDS NP_964321.1 42518391 2742324 337709..337993 1 NC_005362.1 Lj965 prophage protein 337993 2742324 LJ0301 Lactobacillus johnsonii NCC 533 Lj965 prophage protein NP_964321.1 337709 D 257314 CDS NP_964322.1 42518392 2743306 338129..338965 1 NC_005362.1 Lj965 prophage antirepressor 338965 2743306 LJ0302 Lactobacillus johnsonii NCC 533 Lj965 prophage antirepressor NP_964322.1 338129 D 257314 CDS NP_964323.1 42518393 2741857 339360..339842 1 NC_005362.1 Lj965 prophage protein 339842 2741857 LJ0303 Lactobacillus johnsonii NCC 533 Lj965 prophage protein NP_964323.1 339360 D 257314 CDS NP_964324.1 42518394 2743264 341279..342334 1 NC_005362.1 Lj965 prophage protein 342334 2743264 LJ0304 Lactobacillus johnsonii NCC 533 Lj965 prophage protein NP_964324.1 341279 D 257314 CDS NP_964325.1 42518395 2742958 342312..342692 1 NC_005362.1 Lj965 prophage protein 342692 2742958 LJ0305 Lactobacillus johnsonii NCC 533 Lj965 prophage protein NP_964325.1 342312 D 257314 CDS NP_964326.1 42518396 2742567 342714..343310 1 NC_005362.1 Lj965 prophage protein 343310 2742567 LJ0306 Lactobacillus johnsonii NCC 533 Lj965 prophage protein NP_964326.1 342714 D 257314 CDS NP_964327.1 42518397 2742256 343363..344217 1 NC_005362.1 Lj965 prophage terminase small subunit 344217 2742256 LJ0307 Lactobacillus johnsonii NCC 533 Lj965 prophage terminase small subunit NP_964327.1 343363 D 257314 CDS NP_964328.1 42518398 2741890 344204..345478 1 NC_005362.1 Lj965 prophage terminase large subunit 345478 2741890 LJ0308 Lactobacillus johnsonii NCC 533 Lj965 prophage terminase large subunit NP_964328.1 344204 D 257314 CDS NP_964329.1 42518399 2743384 345494..346993 1 NC_005362.1 Lj965 prophage portal protein 346993 2743384 LJ0309 Lactobacillus johnsonii NCC 533 Lj965 prophage portal protein NP_964329.1 345494 D 257314 CDS NP_964330.1 42518400 2742177 346923..347210 1 NC_005362.1 Lj965 prophage protein 347210 2742177 LJ0310 Lactobacillus johnsonii NCC 533 Lj965 prophage protein NP_964330.1 346923 D 257314 CDS NP_964331.1 42518401 2742701 347217..348299 1 NC_005362.1 Lj965 prophage minor head protein 348299 2742701 LJ0311 Lactobacillus johnsonii NCC 533 Lj965 prophage minor head protein NP_964331.1 347217 D 257314 CDS NP_964332.1 42518402 2743483 348454..349098 1 NC_005362.1 Lj965 prophage scaffold protein 349098 2743483 LJ0312 Lactobacillus johnsonii NCC 533 Lj965 prophage scaffold protein NP_964332.1 348454 D 257314 CDS NP_964333.1 42518403 2743718 349111..349476 1 NC_005362.1 Lj965 prophage protein 349476 2743718 LJ0313 Lactobacillus johnsonii NCC 533 Lj965 prophage protein NP_964333.1 349111 D 257314 CDS NP_964334.1 42518404 2742572 349497..350546 1 NC_005362.1 Lj965 prophage major head protein 350546 2742572 LJ0314 Lactobacillus johnsonii NCC 533 Lj965 prophage major head protein NP_964334.1 349497 D 257314 CDS NP_964335.1 42518405 2742836 350556..350873 1 NC_005362.1 Lj965 prophage protein 350873 2742836 LJ0315 Lactobacillus johnsonii NCC 533 Lj965 prophage protein NP_964335.1 350556 D 257314 CDS NP_964336.1 42518406 2741938 350870..351223 1 NC_005362.1 Lj965 prophage protein 351223 2741938 LJ0316 Lactobacillus johnsonii NCC 533 Lj965 prophage protein NP_964336.1 350870 D 257314 CDS NP_964337.1 42518407 2742004 351216..351764 1 NC_005362.1 Lj965 prophage protein 351764 2742004 LJ0317 Lactobacillus johnsonii NCC 533 Lj965 prophage protein NP_964337.1 351216 D 257314 CDS NP_964338.1 42518408 2741981 351765..352133 1 NC_005362.1 Lj965 prophage protein 352133 2741981 LJ0318 Lactobacillus johnsonii NCC 533 Lj965 prophage protein NP_964338.1 351765 D 257314 CDS NP_964339.1 42518409 2743181 352136..352615 1 NC_005362.1 Lj965 prophage major tail protein 352615 2743181 LJ0319 Lactobacillus johnsonii NCC 533 Lj965 prophage major tail protein NP_964339.1 352136 D 257314 CDS NP_964340.1 42518410 2743614 352693..353103 1 NC_005362.1 Lj965 prophage protein 353103 2743614 LJ0320 Lactobacillus johnsonii NCC 533 Lj965 prophage protein NP_964340.1 352693 D 257314 CDS NP_964341.1 42518411 2742420 353196..353489 1 NC_005362.1 Lj965 prophage protein 353489 2742420 LJ0321 Lactobacillus johnsonii NCC 533 Lj965 prophage protein NP_964341.1 353196 D 257314 CDS NP_964342.1 42518412 2742925 353489..359554 1 NC_005362.1 Lj965 prophage putative minor tail protein 359554 2742925 LJ0322 Lactobacillus johnsonii NCC 533 Lj965 prophage putative minor tail protein NP_964342.1 353489 D 257314 CDS NP_964343.1 42518413 2743422 359572..359928 1 NC_005362.1 Lj965 prophage protein 359928 2743422 LJ0323 Lactobacillus johnsonii NCC 533 Lj965 prophage protein NP_964343.1 359572 D 257314 CDS NP_964344.1 42518414 2743068 359942..364816 1 NC_005362.1 Lj965 prophage protein 364816 2743068 LJ0324 Lactobacillus johnsonii NCC 533 Lj965 prophage protein NP_964344.1 359942 D 257314 CDS NP_964345.1 42518415 2743039 364948..365208 1 NC_005362.1 Lj965 prophage protein 365208 2743039 LJ0325 Lactobacillus johnsonii NCC 533 Lj965 prophage protein NP_964345.1 364948 D 257314 CDS NP_964346.1 42518416 2741994 365208..365615 1 NC_005362.1 Lj965 prophage protein 365615 2741994 LJ0326 Lactobacillus johnsonii NCC 533 Lj965 prophage protein NP_964346.1 365208 D 257314 CDS NP_964347.1 42518417 2742343 365625..365882 1 NC_005362.1 Lj965 prophage protein 365882 2742343 LJ0327 Lactobacillus johnsonii NCC 533 Lj965 prophage protein NP_964347.1 365625 D 257314 CDS NP_964348.1 42518418 2742095 365875..366222 1 NC_005362.1 Lj965 prophage holin 366222 2742095 LJ0328 Lactobacillus johnsonii NCC 533 Lj965 prophage holin NP_964348.1 365875 D 257314 CDS NP_964349.1 42518419 2743543 366215..367147 1 NC_005362.1 Lj965 prophage lysin 367147 2743543 LJ0329 Lactobacillus johnsonii NCC 533 Lj965 prophage lysin NP_964349.1 366215 D 257314 CDS NP_964350.1 42518420 2742305 367573..367791 1 NC_005362.1 Lj965 prophage protein 367791 2742305 LJ0330 Lactobacillus johnsonii NCC 533 Lj965 prophage protein NP_964350.1 367573 D 257314 CDS NP_964351.1 42518421 2741877 368143..370611 1 NC_005362.1 ATP-dependent Clp protease ATP-binding subunit clpA-like protein 370611 2741877 LJ0331 Lactobacillus johnsonii NCC 533 ATP-dependent Clp protease ATP-binding subunit clpA-like protein NP_964351.1 368143 D 257314 CDS NP_964352.1 42518422 2742920 370819..374448 1 NC_005362.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 374448 rpoB 2742920 rpoB Lactobacillus johnsonii NCC 533 DNA-directed RNA polymerase subunit beta NP_964352.1 370819 D 257314 CDS NP_964353.1 42518423 2741996 374466..378140 1 NC_005362.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 378140 2741996 LJ0333 Lactobacillus johnsonii NCC 533 DNA-directed RNA polymerase subunit beta' NP_964353.1 374466 D 257314 CDS NP_964354.1 42518424 2742705 complement(378215..378886) 1 NC_005362.1 contains type III leader peptidase domain; hypothetical protein 378886 2742705 LJ0334 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964354.1 378215 R 257314 CDS NP_964355.1 42518425 2742672 379053..379460 1 NC_005362.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 379460 rpsL 2742672 rpsL Lactobacillus johnsonii NCC 533 30S ribosomal protein S12 NP_964355.1 379053 D 257314 CDS NP_964356.1 42518426 2742807 379484..379954 1 NC_005362.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 379954 2742807 LJ0336 Lactobacillus johnsonii NCC 533 30S ribosomal protein S7 NP_964356.1 379484 D 257314 CDS NP_964357.1 42518427 2742175 379984..382080 1 NC_005362.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 382080 2742175 LJ0337 Lactobacillus johnsonii NCC 533 elongation factor G NP_964357.1 379984 D 257314 CDS NP_964358.1 42518428 2742245 382351..382659 1 NC_005362.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 382659 rpsJ 2742245 rpsJ Lactobacillus johnsonii NCC 533 30S ribosomal protein S10 NP_964358.1 382351 D 257314 CDS NP_964359.1 42518429 2742204 382686..383315 1 NC_005362.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 383315 rplC 2742204 rplC Lactobacillus johnsonii NCC 533 50S ribosomal protein L3 NP_964359.1 382686 D 257314 CDS NP_964360.1 42518430 2743395 383330..383947 1 NC_005362.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 383947 rplD 2743395 rplD Lactobacillus johnsonii NCC 533 50S ribosomal protein L4 NP_964360.1 383330 D 257314 CDS NP_964361.1 42518431 2743489 383947..384243 1 NC_005362.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 384243 rplW 2743489 rplW Lactobacillus johnsonii NCC 533 50S ribosomal protein L23 NP_964361.1 383947 D 257314 CDS NP_964362.1 42518432 2742459 384263..385099 1 NC_005362.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 385099 rplB 2742459 rplB Lactobacillus johnsonii NCC 533 50S ribosomal protein L2 NP_964362.1 384263 D 257314 CDS NP_964363.1 42518433 2743337 385121..385408 1 NC_005362.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 385408 rpsS 2743337 rpsS Lactobacillus johnsonii NCC 533 30S ribosomal protein S19 NP_964363.1 385121 D 257314 CDS NP_964364.1 42518434 2742919 385429..385782 1 NC_005362.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 385782 rplV 2742919 rplV Lactobacillus johnsonii NCC 533 50S ribosomal protein L22 NP_964364.1 385429 D 257314 CDS NP_964365.1 42518435 2742915 385797..386465 1 NC_005362.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 386465 rpsC 2742915 rpsC Lactobacillus johnsonii NCC 533 30S ribosomal protein S3 NP_964365.1 385797 D 257314 CDS NP_964366.1 42518436 2743403 386468..386905 1 NC_005362.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 386905 rplP 2743403 rplP Lactobacillus johnsonii NCC 533 50S ribosomal protein L16 NP_964366.1 386468 D 257314 CDS NP_964367.1 42518437 2743425 386895..387092 1 NC_005362.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 387092 rpmC 2743425 rpmC Lactobacillus johnsonii NCC 533 50S ribosomal protein L29 NP_964367.1 386895 D 257314 CDS NP_964368.1 42518438 2742763 387115..387381 1 NC_005362.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 387381 rpsQ 2742763 rpsQ Lactobacillus johnsonii NCC 533 30S ribosomal protein S17 NP_964368.1 387115 D 257314 CDS NP_964369.1 42518439 2742432 387415..387783 1 NC_005362.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 387783 rplN 2742432 rplN Lactobacillus johnsonii NCC 533 50S ribosomal protein L14 NP_964369.1 387415 D 257314 CDS NP_964370.1 42518440 2742142 387804..388043 1 NC_005362.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 388043 rplX 2742142 rplX Lactobacillus johnsonii NCC 533 50S ribosomal protein L24 NP_964370.1 387804 D 257314 CDS NP_964371.1 42518441 2742625 388058..388600 1 NC_005362.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 388600 rplE 2742625 rplE Lactobacillus johnsonii NCC 533 50S ribosomal protein L5 NP_964371.1 388058 D 257314 CDS NP_964372.1 42518442 2742644 388615..388800 1 NC_005362.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 388800 rpsN 2742644 rpsN Lactobacillus johnsonii NCC 533 30S ribosomal protein S14 NP_964372.1 388615 D 257314 CDS NP_964373.1 42518443 2742566 388825..389223 1 NC_005362.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 389223 rpsH 2742566 rpsH Lactobacillus johnsonii NCC 533 30S ribosomal protein S8 NP_964373.1 388825 D 257314 CDS NP_964374.1 42518444 2741899 389248..389778 1 NC_005362.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 389778 rplF 2741899 rplF Lactobacillus johnsonii NCC 533 50S ribosomal protein L6 NP_964374.1 389248 D 257314 CDS NP_964375.1 42518445 2742506 389806..390165 1 NC_005362.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 390165 rplR 2742506 rplR Lactobacillus johnsonii NCC 533 50S ribosomal protein L18 NP_964375.1 389806 D 257314 CDS NP_964376.1 42518446 2742839 390183..390707 1 NC_005362.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 390707 rpsE 2742839 rpsE Lactobacillus johnsonii NCC 533 30S ribosomal protein S5 NP_964376.1 390183 D 257314 CDS NP_964377.1 42518447 2743317 390720..390902 1 NC_005362.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 390902 rpmD 2743317 rpmD Lactobacillus johnsonii NCC 533 50S ribosomal protein L30 NP_964377.1 390720 D 257314 CDS NP_964378.1 42518448 2743069 390928..391368 1 NC_005362.1 late assembly protein; 50S ribosomal protein L15 391368 rplO 2743069 rplO Lactobacillus johnsonii NCC 533 50S ribosomal protein L15 NP_964378.1 390928 D 257314 CDS NP_964379.1 42518449 2743359 391368..392663 1 NC_005362.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 392663 secY 2743359 secY Lactobacillus johnsonii NCC 533 preprotein translocase subunit SecY NP_964379.1 391368 D 257314 CDS NP_964380.1 42518450 2743222 392675..393328 1 NC_005362.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 393328 adk 2743222 adk Lactobacillus johnsonii NCC 533 adenylate kinase NP_964380.1 392675 D 257314 CDS NP_964381.1 42518451 2743667 393402..393623 1 NC_005362.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 393623 infA 2743667 infA Lactobacillus johnsonii NCC 533 translation initiation factor IF-1 NP_964381.1 393402 D 257314 CDS NP_964382.1 42518452 2743640 393638..393754 1 NC_005362.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 393754 rpmJ 2743640 rpmJ Lactobacillus johnsonii NCC 533 50S ribosomal protein L36 NP_964382.1 393638 D 257314 CDS NP_964383.1 42518453 2743416 393788..394135 1 NC_005362.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 394135 rpsM 2743416 rpsM Lactobacillus johnsonii NCC 533 30S ribosomal protein S13 NP_964383.1 393788 D 257314 CDS NP_964384.1 42518454 2741867 394160..394549 1 NC_005362.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 394549 2741867 LJ0360 Lactobacillus johnsonii NCC 533 30S ribosomal protein S11 NP_964384.1 394160 D 257314 CDS NP_964385.1 42518455 2743559 394595..395533 1 NC_005362.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 395533 2743559 LJ0361 Lactobacillus johnsonii NCC 533 DNA-directed RNA polymerase subunit alpha NP_964385.1 394595 D 257314 CDS NP_964386.1 42518456 2741932 395560..395943 1 NC_005362.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 395943 rplQ 2741932 rplQ Lactobacillus johnsonii NCC 533 50S ribosomal protein L17 NP_964386.1 395560 D 257314 CDS NP_964387.1 42518457 2741915 396129..396977 1 NC_005362.1 with CbiNQ forms the ABC transporter for cobalt import; Lactobacillus has two adjacent copies of this gene; cobalt transporter ATP-binding subunit 396977 cbiO 2741915 cbiO Lactobacillus johnsonii NCC 533 cobalt transporter ATP-binding subunit NP_964387.1 396129 D 257314 CDS NP_964388.1 42518458 2742236 396953..397822 1 NC_005362.1 with CbiNQ forms the ABC transporter for cobalt import; Lactobacillus has two adjacent copies of this gene; cobalt transporter ATP-binding subunit 397822 cbiO 2742236 cbiO Lactobacillus johnsonii NCC 533 cobalt transporter ATP-binding subunit NP_964388.1 396953 D 257314 CDS NP_964389.1 42518459 2743573 397815..398612 1 NC_005362.1 ABC transporter permease component 398612 2743573 LJ0365 Lactobacillus johnsonii NCC 533 ABC transporter permease component NP_964389.1 397815 D 257314 CDS NP_964390.1 42518460 2743014 398616..399407 1 NC_005362.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 399407 truA 2743014 truA Lactobacillus johnsonii NCC 533 tRNA pseudouridine synthase A NP_964390.1 398616 D 257314 CDS NP_964391.1 42518461 2743135 399510..399953 1 NC_005362.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 399953 rplM 2743135 rplM Lactobacillus johnsonii NCC 533 50S ribosomal protein L13 NP_964391.1 399510 D 257314 CDS NP_964392.1 42518462 2743753 399967..400362 1 NC_005362.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 400362 rpsI 2743753 rpsI Lactobacillus johnsonii NCC 533 30S ribosomal protein S9 NP_964392.1 399967 D 257314 CDS NP_964393.1 42518463 2742059 400937..402424 1 NC_005362.1 ABC transporter permease component 402424 2742059 LJ0369 Lactobacillus johnsonii NCC 533 ABC transporter permease component NP_964393.1 400937 D 257314 CDS NP_964394.1 42518464 2743432 402425..403999 1 NC_005362.1 ABC transporter ATPase and permease components 403999 2743432 LJ0370 Lactobacillus johnsonii NCC 533 ABC transporter ATPase and permease components NP_964394.1 402425 D 257314 CDS NP_964395.1 42518465 2742737 404024..404410 1 NC_005362.1 contains phosphoglycerate mutase domain; hypothetical protein 404410 2742737 LJ0371 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964395.1 404024 D 257314 CDS NP_964396.1 42518466 2742598 404511..405560 1 NC_005362.1 transposase 405560 2742598 LJ0372 Lactobacillus johnsonii NCC 533 transposase NP_964396.1 404511 D 257314 CDS NP_964397.1 42518467 2742306 405611..406129 1 NC_005362.1 hypothetical protein 406129 2742306 LJ0373 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964397.1 405611 D 257314 CDS NP_964398.1 42518468 2742074 complement(406355..406939) 1 NC_005362.1 contains ThiJ/PfpI domain; hypothetical protein 406939 2742074 LJ0374 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964398.1 406355 R 257314 CDS NP_964399.1 42518469 2743163 407201..407890 1 NC_005362.1 contains phosphoglycerate mutase domain; hypothetical protein 407890 2743163 LJ0375 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964399.1 407201 D 257314 CDS NP_964400.1 42518470 2743313 complement(407917..408243) 1 NC_005362.1 contains bacterial regulatory arsR domain; hypothetical protein 408243 2743313 LJ0376 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964400.1 407917 R 257314 CDS NP_964401.1 42518471 2742096 408336..409220 1 NC_005362.1 contains cation efflux domain; hypothetical protein 409220 2742096 LJ0377 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964401.1 408336 D 257314 CDS NP_964402.1 42518472 2742130 409285..409542 1 NC_005362.1 hypothetical protein 409542 2742130 LJ0378 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964402.1 409285 D 257314 CDS NP_964403.1 42518473 2743195 409545..409787 1 NC_005362.1 hypothetical protein 409787 2743195 LJ0379 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964403.1 409545 D 257314 CDS NP_964404.1 42518474 2741990 409797..410486 1 NC_005362.1 phosphoglycerate mutase 410486 2741990 LJ0380 Lactobacillus johnsonii NCC 533 phosphoglycerate mutase NP_964404.1 409797 D 257314 CDS NP_964405.1 42518475 2743579 410595..411530 1 NC_005362.1 hypothetical protein 411530 2743579 LJ0381 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964405.1 410595 D 257314 CDS NP_964406.1 42518476 2742425 411766..422625 1 NC_005362.1 contains gram positive anchor domain; hypothetical protein 422625 2742425 LJ0382 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964406.1 411766 D 257314 CDS NP_964407.1 42518477 2742082 complement(422908..424569) 1 NC_005362.1 contains amino acid permease domain; hypothetical protein 424569 2742082 LJ0383 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964407.1 422908 R 257314 CDS NP_964408.1 42518478 2742118 425047..426234 1 NC_005362.1 contains eubacterial secY domain; hypothetical protein 426234 2742118 LJ0384 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964408.1 425047 D 257314 CDS NP_964409.1 42518479 2743203 426237..427745 1 NC_005362.1 hypothetical protein 427745 2743203 LJ0385 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964409.1 426237 D 257314 CDS NP_964410.1 42518480 2743151 427747..429291 1 NC_005362.1 hypothetical protein 429291 2743151 LJ0386 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964410.1 427747 D 257314 CDS NP_964411.1 42518481 2742732 429275..430135 1 NC_005362.1 hypothetical protein 430135 2742732 LJ0387 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964411.1 429275 D 257314 CDS NP_964412.1 42518482 2743710 430140..432506 1 NC_005362.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, especially gram positive pathogens, have paralogs that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA 432506 2743710 LJ0388 Lactobacillus johnsonii NCC 533 preprotein translocase subunit SecA NP_964412.1 430140 D 257314 CDS NP_964413.1 42518483 2742346 432519..434045 1 NC_005362.1 contains glycosyl transferases group 1 domain; hypothetical protein 434045 2742346 LJ0389 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964413.1 432519 D 257314 CDS NP_964414.1 42518484 2741880 434042..435370 1 NC_005362.1 hypothetical protein 435370 2741880 LJ0390 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964414.1 434042 D 257314 CDS NP_964415.1 42518485 2742690 435913..439203 1 NC_005362.1 hypothetical protein 439203 2742690 LJ0391 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964415.1 435913 D 257314 CDS NP_964416.1 42518486 2743576 439357..440235 1 NC_005362.1 contains glycosyl transferase family 2 domain; hypothetical protein 440235 2743576 LJ0393 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964416.1 439357 D 257314 CDS NP_964417.1 42518487 2742726 complement(440291..441307) 1 NC_005362.1 hypothetical protein 441307 2742726 LJ0394 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964417.1 440291 R 257314 CDS NP_964418.1 42518488 2742814 complement(441590..442939) 1 NC_005362.1 aminopeptidase C 442939 2742814 LJ0395 Lactobacillus johnsonii NCC 533 aminopeptidase C NP_964418.1 441590 R 257314 CDS NP_964419.1 42518489 2742629 443136..444170 1 NC_005362.1 similar to transcriptional regulator lytR; hypothetical protein 444170 2742629 LJ0396 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964419.1 443136 D 257314 CDS NP_964420.1 42518490 2742322 444288..444839 1 NC_005362.1 deoxyuridine 5'-triphosphate nucleotidohydrolase 444839 2742322 LJ0397 Lactobacillus johnsonii NCC 533 deoxyuridine 5'-triphosphate nucleotidohydrolase NP_964420.1 444288 D 257314 CDS NP_964421.1 42518491 2743747 444839..446218 1 NC_005362.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 446218 2743747 LJ0398 Lactobacillus johnsonii NCC 533 DNA repair protein RadA NP_964421.1 444839 D 257314 CDS NP_964422.1 42518492 2743684 446300..447799 1 NC_005362.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 447799 gltX 2743684 gltX Lactobacillus johnsonii NCC 533 glutamyl-tRNA synthetase NP_964422.1 446300 D 257314 CDS NP_964423.1 42518493 2742569 447889..449301 1 NC_005362.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 449301 cysS 2742569 cysS Lactobacillus johnsonii NCC 533 cysteinyl-tRNA synthetase NP_964423.1 447889 D 257314 CDS NP_964424.1 42518494 2742443 449294..449737 1 NC_005362.1 contains uncharacterized BCR domain; hypothetical protein 449737 2742443 LJ0401 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964424.1 449294 D 257314 CDS NP_964425.1 42518495 2741946 449724..450479 1 NC_005362.1 contains SpoU rRNA methylase family domain; hypothetical protein 450479 2741946 LJ0402 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964425.1 449724 D 257314 CDS NP_964426.1 42518496 2742889 451032..451250 1 NC_005362.1 hypothetical protein 451250 2742889 LJ0403 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964426.1 451032 D 257314 CDS NP_964427.1 42518497 2742928 451318..451536 1 NC_005362.1 hypothetical protein 451536 2742928 LJ0404 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964427.1 451318 D 257314 CDS NP_964428.1 42518498 2743290 451658..453166 1 NC_005362.1 gluconokinase 453166 2743290 LJ0405 Lactobacillus johnsonii NCC 533 gluconokinase NP_964428.1 451658 D 257314 CDS NP_964429.1 42518499 2742878 complement(453232..454992) 1 NC_005362.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 454992 2742878 LJ0406 Lactobacillus johnsonii NCC 533 1-deoxy-D-xylulose-5-phosphate synthase NP_964429.1 453232 R 257314 CDS NP_964430.1 42518500 2742832 complement(455092..456339) 1 NC_005362.1 contains permease domain; hypothetical protein 456339 2742832 LJ0407 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964430.1 455092 R 257314 CDS NP_964431.1 42518501 2742516 complement(456437..457489) 1 NC_005362.1 contains polyprenyl synthetase domain; hypothetical protein 457489 2742516 LJ0408 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964431.1 456437 R 257314 CDS NP_964432.1 42518502 2743084 457819..457968 1 NC_005362.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif; 50S ribosomal protein L33 457968 rpmG 2743084 rpmG Lactobacillus johnsonii NCC 533 50S ribosomal protein L33 NP_964432.1 457819 D 257314 CDS NP_964433.1 42518503 2742049 457976..458146 1 NC_005362.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 458146 secE 2742049 secE Lactobacillus johnsonii NCC 533 preprotein translocase subunit SecE NP_964433.1 457976 D 257314 CDS NP_964434.1 42518504 2741924 458242..458793 1 NC_005362.1 transcription antitermination protein NusG 458793 2741924 LJ0409 Lactobacillus johnsonii NCC 533 transcription antitermination protein NusG NP_964434.1 458242 D 257314 CDS NP_964435.1 42518505 2742066 458925..459350 1 NC_005362.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 459350 rplK 2742066 rplK Lactobacillus johnsonii NCC 533 50S ribosomal protein L11 NP_964435.1 458925 D 257314 CDS NP_964436.1 42518506 2743318 459448..460140 1 NC_005362.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 460140 rplA 2743318 rplA Lactobacillus johnsonii NCC 533 50S ribosomal protein L1 NP_964436.1 459448 D 257314 CDS NP_964437.1 42518507 2742831 460271..460915 1 NC_005362.1 ABC transporter permease component 460915 2742831 LJ0412 Lactobacillus johnsonii NCC 533 ABC transporter permease component NP_964437.1 460271 D 257314 CDS NP_964438.1 42518508 2742653 460902..461549 1 NC_005362.1 ABC transporter ATPase component 461549 2742653 LJ0413 Lactobacillus johnsonii NCC 533 ABC transporter ATPase component NP_964438.1 460902 D 257314 CDS NP_964439.1 42518509 2742252 461549..462337 1 NC_005362.1 ABC transporter solute-binding component 462337 2742252 LJ0414 Lactobacillus johnsonii NCC 533 ABC transporter solute-binding component NP_964439.1 461549 D 257314 CDS NP_964440.1 42518510 2742991 462537..463037 1 NC_005362.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 463037 rplJ 2742991 rplJ Lactobacillus johnsonii NCC 533 50S ribosomal protein L10 NP_964440.1 462537 D 257314 CDS NP_964441.1 42518511 2742844 463081..463443 1 NC_005362.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 463443 rplL 2742844 rplL Lactobacillus johnsonii NCC 533 50S ribosomal protein L7/L12 NP_964441.1 463081 D 257314 CDS NP_964442.1 42518512 2742218 463521..464357 1 NC_005362.1 contains ion transport domain; hypothetical protein 464357 2742218 LJ0417 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964442.1 463521 D 257314 CDS NP_964443.1 42518513 2741898 complement(464389..464613) 1 NC_005362.1 hypothetical protein 464613 2741898 LJ0418 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964443.1 464389 R 257314 CDS NP_964444.1 42518514 2743044 464717..465328 1 NC_005362.1 contains SAM-dependent methyltransferase domain; hypothetical protein 465328 2743044 LJ0419 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964444.1 464717 D 257314 CDS NP_964445.1 42518515 2742361 465795..466616 1 NC_005362.1 hypothetical protein 466616 2742361 LJ0420 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964445.1 465795 D 257314 CDS NP_964446.1 42518516 2741982 466729..467055 1 NC_005362.1 hypothetical protein 467055 2741982 LJ0421 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964446.1 466729 D 257314 CDS NP_964447.1 42518517 2743495 467129..467611 1 NC_005362.1 contains cytidine and deoxycytidylate deaminase domain; hypothetical protein 467611 2743495 LJ0422 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964447.1 467129 D 257314 CDS NP_964448.1 42518518 2742067 467788..469596 1 NC_005362.1 DNA polymerase III subunit gamma/tau 469596 2742067 LJ0423 Lactobacillus johnsonii NCC 533 DNA polymerase III subunit gamma/tau NP_964448.1 467788 D 257314 CDS NP_964449.1 42518519 2742189 469610..469939 1 NC_005362.1 contains DUF149 domain; hypothetical protein 469939 2742189 LJ0424 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964449.1 469610 D 257314 CDS NP_964450.1 42518520 2742855 469941..470540 1 NC_005362.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 470540 recR 2742855 recR Lactobacillus johnsonii NCC 533 recombination protein RecR NP_964450.1 469941 D 257314 CDS NP_964451.1 42518521 2743720 470537..470773 1 NC_005362.1 hypothetical protein 470773 2743720 LJ0426 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964451.1 470537 D 257314 CDS NP_964452.1 42518522 2743708 470880..471521 1 NC_005362.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 471521 tmk 2743708 tmk Lactobacillus johnsonii NCC 533 thymidylate kinase NP_964452.1 470880 D 257314 CDS NP_964453.1 42518523 2742659 471535..471861 1 NC_005362.1 hypothetical protein 471861 2742659 LJ0428 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964453.1 471535 D 257314 CDS NP_964454.1 42518524 2743528 471861..472718 1 NC_005362.1 contains ATPase involved in DNA replication domain; hypothetical protein 472718 2743528 LJ0429 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964454.1 471861 D 257314 CDS NP_964455.1 42518525 2742589 472729..473073 1 NC_005362.1 in Bacillus subtilis this protein is involved in the negative regulation of DNA replication initiation; interacts with DnaN and DnaA; DNA replication intiation control protein YabA 473073 2742589 LJ0430 Lactobacillus johnsonii NCC 533 DNA replication intiation control protein YabA NP_964455.1 472729 D 257314 CDS NP_964456.1 42518526 2742795 473079..473936 1 NC_005362.1 contains tetrapyrrole (Corrin/Porphyrin) methylase domain; hypothetical protein 473936 2742795 LJ0431 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964456.1 473079 D 257314 CDS NP_964457.1 42518527 2742428 473951..474685 1 NC_005362.1 hypothetical protein 474685 2742428 LJ0432 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964457.1 473951 D 257314 CDS NP_964458.1 42518528 2743488 474734..475255 1 NC_005362.1 hypothetical protein 475255 2743488 LJ0433 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964458.1 474734 D 257314 CDS NP_964459.1 42518529 2743585 475284..476009 1 NC_005362.1 contains glycoprotease domain; hypothetical protein 476009 2743585 LJ0434 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964459.1 475284 D 257314 CDS NP_964460.1 42518530 2742596 475993..476529 1 NC_005362.1 contains acetyltransferase (GNAT) domain; hypothetical protein 476529 2742596 LJ0435 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964460.1 475993 D 257314 CDS NP_964461.1 42518531 2742153 476547..477593 1 NC_005362.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 477593 2742153 LJ0436 Lactobacillus johnsonii NCC 533 putative DNA-binding/iron metalloprotein/AP endonuclease NP_964461.1 476547 D 257314 CDS NP_964462.1 42518532 2741907 477811..480813 1 NC_005362.1 hypothetical protein 480813 2741907 LJ0437 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964462.1 477811 D 257314 CDS NP_964463.1 42518533 2742060 480818..481699 1 NC_005362.1 hypothetical protein 481699 2742060 LJ0438 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964463.1 480818 D 257314 CDS NP_964464.1 42518534 2742499 481951..482574 1 NC_005362.1 hypothetical protein 482574 2742499 LJ0439 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964464.1 481951 D 257314 CDS NP_964465.1 42518535 2743530 complement(482669..484024) 1 NC_005362.1 contains voltage gated chloride channel domain; hypothetical protein 484024 2743530 LJ0440 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964465.1 482669 R 257314 CDS NP_964466.1 42518536 2742024 complement(484157..485149) 1 NC_005362.1 contains IMP dehydrogenase/GMP reductase domains; guanosine 5'-monophosphate oxidoreductase 485149 2742024 LJ0441 Lactobacillus johnsonii NCC 533 guanosine 5'-monophosphate oxidoreductase NP_964466.1 484157 R 257314 CDS NP_964467.1 42518537 2742075 485340..486629 1 NC_005362.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 486629 2742075 LJ0442 Lactobacillus johnsonii NCC 533 adenylosuccinate synthetase NP_964467.1 485340 D 257314 CDS NP_964468.1 42518538 2743160 486633..487928 1 NC_005362.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 487928 2743160 LJ0443 Lactobacillus johnsonii NCC 533 adenylosuccinate lyase NP_964468.1 486633 D 257314 CDS NP_964469.1 42518539 2742576 488002..488745 1 NC_005362.1 contains predicted EndoIII-related endonuclease domain; hypothetical protein 488745 2742576 LJ0444 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964469.1 488002 D 257314 CDS NP_964470.1 42518540 2741863 488764..489216 1 NC_005362.1 contains MutT-like domain; hypothetical protein 489216 2741863 LJ0445 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964470.1 488764 D 257314 CDS NP_964471.1 42518541 2743005 489377..489625 1 NC_005362.1 hypothetical protein 489625 2743005 LJ0446 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964471.1 489377 D 257314 CDS NP_964472.1 42518542 2743327 489625..489978 1 NC_005362.1 hypothetical protein 489978 2743327 LJ0447 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964472.1 489625 D 257314 CDS NP_964473.1 42518543 2743115 490168..491427 1 NC_005362.1 two-component system histidine kinase 491427 2743115 LJ0448 Lactobacillus johnsonii NCC 533 two-component system histidine kinase NP_964473.1 490168 D 257314 CDS NP_964474.1 42518544 2742788 491428..492195 1 NC_005362.1 two-component system response regulator 492195 2742788 LJ0449 Lactobacillus johnsonii NCC 533 two-component system response regulator NP_964474.1 491428 D 257314 CDS NP_964475.1 42518545 2741858 492358..493116 1 NC_005362.1 contains predicted acyl-CoA transferases/carnitine dehydratase domain; hypothetical protein 493116 2741858 LJ0450 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964475.1 492358 D 257314 CDS NP_964476.1 42518546 2743078 493315..494133 1 NC_005362.1 contains transcriptional regulator helix-turn-helix domain; hypothetical protein 494133 2743078 LJ0451 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964476.1 493315 D 257314 CDS NP_964477.1 42518547 2742005 494251..494718 1 NC_005362.1 hypothetical protein 494718 2742005 LJ0452 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964477.1 494251 D 257314 CDS NP_964478.1 42518548 2743233 complement(494812..496104) 1 NC_005362.1 contains bacterial extracellular solute-binding domain; hypothetical protein 496104 2743233 LJ0453 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964478.1 494812 R 257314 CDS NP_964479.1 42518549 2742563 complement(496215..498140) 1 NC_005362.1 ABC transporter ATPase component 498140 2742563 LJ0454 Lactobacillus johnsonii NCC 533 ABC transporter ATPase component NP_964479.1 496215 R 257314 CDS NP_964480.1 42518550 2742035 498306..498950 1 NC_005362.1 modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex 498950 2742035 LJ0455 Lactobacillus johnsonii NCC 533 redox-sensing transcriptional repressor Rex NP_964480.1 498306 D 257314 CDS NP_964481.1 42518551 2742515 499091..499657 1 NC_005362.1 contains predicted Rossmann fold nucleotide-binding domain; hypothetical protein 499657 2742515 LJ0456 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964481.1 499091 D 257314 CDS NP_964482.1 42518552 2742224 499599..499904 1 NC_005362.1 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC cellobiose specific 499904 2742224 LJ0457 Lactobacillus johnsonii NCC 533 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC cellobiose specific NP_964482.1 499599 D 257314 CDS NP_964483.1 42518553 2742045 500064..500522 1 NC_005362.1 hypothetical protein 500522 2742045 LJ0458 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964483.1 500064 D 257314 CDS NP_964484.1 42518554 2742778 500519..501277 1 NC_005362.1 hypothetical protein 501277 2742778 LJ0459 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964484.1 500519 D 257314 CDS NP_964485.1 42518555 2742040 complement(501720..501872) 1 NC_005362.1 hypothetical protein 501872 2742040 LJ0459b Lactobacillus johnsonii NCC 533 hypothetical protein NP_964485.1 501720 R 257314 CDS NP_964486.1 42518556 2742856 502194..502478 1 NC_005362.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 502478 groES 2742856 groES Lactobacillus johnsonii NCC 533 co-chaperonin GroES NP_964486.1 502194 D 257314 CDS NP_964487.1 42518557 2742759 502509..504140 1 NC_005362.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 504140 groEL 2742759 groEL Lactobacillus johnsonii NCC 533 chaperonin GroEL NP_964487.1 502509 D 257314 CDS NP_964488.1 42518558 2742398 504280..504528 1 NC_005362.1 contains transcriptional regulator helix-turn-helix domain; hypothetical protein 504528 2742398 LJ0462 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964488.1 504280 D 257314 CDS NP_964489.1 42518559 2743506 504477..505115 1 NC_005362.1 hypothetical protein 505115 2743506 LJ0463 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964489.1 504477 D 257314 CDS NP_964490.1 42518560 2742427 505720..507483 1 NC_005362.1 ABC transporter ATPase and permease components 507483 2742427 LJ0464 Lactobacillus johnsonii NCC 533 ABC transporter ATPase and permease components NP_964490.1 505720 D 257314 CDS NP_964491.1 42518561 2742545 507610..510183 1 NC_005362.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 510183 2742545 LJ0465 Lactobacillus johnsonii NCC 533 DNA mismatch repair protein MutS NP_964491.1 507610 D 257314 CDS NP_964492.1 42518562 2742151 510189..512081 1 NC_005362.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 512081 mutL 2742151 mutL Lactobacillus johnsonii NCC 533 DNA mismatch repair protein NP_964492.1 510189 D 257314 CDS NP_964493.1 42518563 2743326 512087..512665 1 NC_005362.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 512665 ruvA 2743326 ruvA Lactobacillus johnsonii NCC 533 Holliday junction DNA helicase RuvA NP_964493.1 512087 D 257314 CDS NP_964494.1 42518564 2742636 512694..513713 1 NC_005362.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 513713 ruvB 2742636 ruvB Lactobacillus johnsonii NCC 533 Holliday junction DNA helicase RuvB NP_964494.1 512694 D 257314 CDS NP_964495.1 42518565 2743336 513789..514229 1 NC_005362.1 contains DUF219 domain; hypothetical protein 514229 2743336 LJ0469 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964495.1 513789 D 257314 CDS NP_964496.1 42518566 2743398 514327..515775 1 NC_005362.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 515775 2743398 LJ0470 Lactobacillus johnsonii NCC 533 glucose-6-phosphate 1-dehydrogenase NP_964496.1 514327 D 257314 CDS NP_964497.1 42518567 2741931 515775..516896 1 NC_005362.1 DNA polymerase IV 516896 2741931 LJ0471 Lactobacillus johnsonii NCC 533 DNA polymerase IV NP_964497.1 515775 D 257314 CDS NP_964498.1 42518568 2742738 516934..517899 1 NC_005362.1 contains DHH domain; hypothetical protein 517899 2742738 LJ0472 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964498.1 516934 D 257314 CDS NP_964499.1 42518569 2742203 517883..519268 1 NC_005362.1 RNA helicase 519268 2742203 LJ0473 Lactobacillus johnsonii NCC 533 RNA helicase NP_964499.1 517883 D 257314 CDS NP_964500.1 42518570 2742664 519500..522148 1 NC_005362.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 522148 alaS 2742664 alaS Lactobacillus johnsonii NCC 533 alanyl-tRNA synthetase NP_964500.1 519500 D 257314 CDS NP_964501.1 42518571 2743390 522203..522460 1 NC_005362.1 hypothetical protein 522460 2743390 LJ0475 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964501.1 522203 D 257314 CDS NP_964502.1 42518572 2743399 522460..522891 1 NC_005362.1 contains predicted endonuclease involved in recombination domain; similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 522891 2743399 LJ0476 Lactobacillus johnsonii NCC 533 Holliday junction resolvase-like protein NP_964502.1 522460 D 257314 CDS NP_964503.1 42518573 2743400 522893..523207 1 NC_005362.1 hypothetical protein 523207 2743400 LJ0477 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964503.1 522893 D 257314 CDS NP_964504.1 42518574 2742894 523265..523807 1 NC_005362.1 hypothetical protein 523807 2742894 LJ0478 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964504.1 523265 D 257314 CDS NP_964505.1 42518575 2742524 523849..526215 1 NC_005362.1 DNA mismatch repair protein MutS 526215 2742524 LJ0479 Lactobacillus johnsonii NCC 533 DNA mismatch repair protein MutS NP_964505.1 523849 D 257314 CDS NP_964506.1 42518576 2742090 526294..526605 1 NC_005362.1 thioredoxin 526605 2742090 LJ0480 Lactobacillus johnsonii NCC 533 thioredoxin NP_964506.1 526294 D 257314 CDS NP_964507.1 42518577 2742965 complement(526688..527083) 1 NC_005362.1 hypothetical protein 527083 2742965 LJ0481 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964507.1 526688 R 257314 CDS NP_964508.1 42518578 2743127 527180..527980 1 NC_005362.1 glutamate racemase 527980 2743127 LJ0482 Lactobacillus johnsonii NCC 533 glutamate racemase NP_964508.1 527180 D 257314 CDS NP_964509.1 42518579 2741937 527983..528606 1 NC_005362.1 contains Ham1 domain; hydrolyzes non-standard nucleotides such as xanthine and inosine; nucleoside-triphosphatase 528606 2741937 LJ0483 Lactobacillus johnsonii NCC 533 nucleoside-triphosphatase NP_964509.1 527983 D 257314 CDS NP_964510.1 42518580 2743235 528762..540875 1 NC_005362.1 contains gram positive anchor domain; hypothetical protein 540875 2743235 LJ0484 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964510.1 528762 D 257314 CDS NP_964511.1 42518581 2742549 541051..542229 1 NC_005362.1 acetate kinase 542229 2742549 LJ0485 Lactobacillus johnsonii NCC 533 acetate kinase NP_964511.1 541051 D 257314 CDS NP_964512.1 42518582 2743575 complement(542275..542808) 1 NC_005362.1 contains mechanosensitive ion channel domain; hypothetical protein 542808 2743575 LJ0486 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964512.1 542275 R 257314 CDS NP_964513.1 42518583 2743089 complement(542790..543170) 1 NC_005362.1 hypothetical protein 543170 2743089 LJ0487 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964513.1 542790 R 257314 CDS NP_964514.1 42518584 2743040 543293..543724 1 NC_005362.1 contains methyl-accepting chemotaxis domain; hypothetical protein 543724 2743040 LJ0488 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964514.1 543293 D 257314 CDS NP_964515.1 42518585 2743335 543747..544079 1 NC_005362.1 hypothetical protein 544079 2743335 LJ0489 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964515.1 543747 D 257314 CDS NP_964516.1 42518586 2743438 complement(544173..545279) 1 NC_005362.1 Xaa-Pro dipeptidase 545279 2743438 LJ0490 Lactobacillus johnsonii NCC 533 Xaa-Pro dipeptidase NP_964516.1 544173 R 257314 CDS NP_964517.1 42518587 2742285 545423..546418 1 NC_005362.1 catabolite control protein A 546418 2742285 LJ0491 Lactobacillus johnsonii NCC 533 catabolite control protein A NP_964517.1 545423 D 257314 CDS NP_964518.1 42518588 2742412 complement(546491..549307) 1 NC_005362.1 contains penicillin binding protein transpeptidase and transglycosylase domains; hypothetical protein 549307 2742412 LJ0492 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964518.1 546491 R 257314 CDS NP_964519.1 42518589 2743099 complement(549406..550803) 1 NC_005362.1 divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases; dipeptidase PepV 550803 2743099 LJ0493 Lactobacillus johnsonii NCC 533 dipeptidase PepV NP_964519.1 549406 R 257314 CDS NP_964520.1 42518590 2742293 complement(550823..552205) 1 NC_005362.1 contains glycerophosphoryl diester phosphodiesterase domain; hypothetical protein 552205 2742293 LJ0494 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964520.1 550823 R 257314 CDS NP_964521.1 42518591 2742870 552305..552631 1 NC_005362.1 hypothetical protein 552631 2742870 LJ0495 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964521.1 552305 D 257314 CDS NP_964522.1 42518592 2742348 552644..554023 1 NC_005362.1 contains 5'-nucleotidase catalytic domain; hypothetical protein 554023 2742348 LJ0496 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964522.1 552644 D 257314 CDS NP_964523.1 42518593 2742833 554023..554562 1 NC_005362.1 hypothetical protein 554562 2742833 LJ0497 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964523.1 554023 D 257314 CDS NP_964524.1 42518594 2743348 554565..555347 1 NC_005362.1 contains haloacid dehalogenase-like hydrolase domain; hypothetical protein 555347 2743348 LJ0498 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964524.1 554565 D 257314 CDS NP_964525.1 42518595 2742770 555344..555952 1 NC_005362.1 hypothetical protein 555952 2742770 LJ0499 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964525.1 555344 D 257314 CDS NP_964526.1 42518596 2742783 complement(555960..556610) 1 NC_005362.1 hypothetical protein 556610 2742783 LJ0500 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964526.1 555960 R 257314 CDS NP_964527.1 42518597 2742812 complement(556637..557593) 1 NC_005362.1 contains pyridine nucleotide-disulphide oxidoreductase domain; hypothetical protein 557593 2742812 LJ0501 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964527.1 556637 R 257314 CDS NP_964528.1 42518598 2742667 557693..558064 1 NC_005362.1 contains S1 RNA binding domain; hypothetical protein 558064 2742667 LJ0502 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964528.1 557693 D 257314 CDS NP_964529.1 42518599 2743431 564086..565294 1 NC_005362.1 methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 565294 2743431 LJ0677 Lactobacillus johnsonii NCC 533 S-adenosylmethionine synthetase NP_964529.1 564086 D 257314 CDS NP_964530.1 42518600 2743058 565284..566741 1 NC_005362.1 major facilitator superfamily permease 566741 2743058 LJ0678 Lactobacillus johnsonii NCC 533 major facilitator superfamily permease NP_964530.1 565284 D 257314 CDS NP_964531.1 42518601 2743282 complement(566784..567434) 1 NC_005362.1 contains PAP2 superfamily domain; hypothetical protein 567434 2743282 LJ0679 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964531.1 566784 R 257314 CDS NP_964532.1 42518602 2742268 567734..570148 1 NC_005362.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 570148 leuS 2742268 leuS Lactobacillus johnsonii NCC 533 leucyl-tRNA synthetase NP_964532.1 567734 D 257314 CDS NP_964533.1 42518603 2742811 570250..571908 1 NC_005362.1 export protein for polysaccharides and teichoic acids 571908 2742811 LJ0681 Lactobacillus johnsonii NCC 533 export protein for polysaccharides and teichoic acids NP_964533.1 570250 D 257314 CDS NP_964534.1 42518604 2742380 572015..573151 1 NC_005362.1 hypothetical protein 573151 2742380 LJ0682 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964534.1 572015 D 257314 CDS NP_964535.1 42518605 2743549 573239..573985 1 NC_005362.1 hypothetical protein 573985 2743549 LJ0683 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964535.1 573239 D 257314 CDS NP_964536.1 42518606 2743716 574029..574874 1 NC_005362.1 contains UPF0031 domain; hypothetical protein 574874 2743716 LJ0684 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964536.1 574029 D 257314 CDS NP_964537.1 42518607 2742838 574927..575853 1 NC_005362.1 D-alanyl-D-alanine carboxypeptidase 575853 2742838 LJ0685 Lactobacillus johnsonii NCC 533 D-alanyl-D-alanine carboxypeptidase NP_964537.1 574927 D 257314 CDS NP_964538.1 42518608 2742414 576133..577809 1 NC_005362.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 577809 argS 2742414 argS Lactobacillus johnsonii NCC 533 arginyl-tRNA synthetase NP_964538.1 576133 D 257314 CDS NP_964539.1 42518609 2742781 577921..578838 1 NC_005362.1 fructose-bisphosphate aldolase 578838 2742781 LJ0687 Lactobacillus johnsonii NCC 533 fructose-bisphosphate aldolase NP_964539.1 577921 D 257314 CDS NP_964540.1 42518610 2743291 578905..579216 1 NC_005362.1 hypothetical protein 579216 2743291 LJ0688 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964540.1 578905 D 257314 CDS NP_964541.1 42518611 2742550 579725..580261 1 NC_005362.1 hypoxanthine-guanine phosphoribosyltransferase 580261 2742550 LJ0689 Lactobacillus johnsonii NCC 533 hypoxanthine-guanine phosphoribosyltransferase NP_964541.1 579725 D 257314 CDS NP_964542.1 42518612 2742942 580273..580944 1 NC_005362.1 contains glutamine amidotransferase class-I domain; hypothetical protein 580944 2742942 LJ0690 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964542.1 580273 D 257314 CDS NP_964543.1 42518613 2742422 581016..581648 1 NC_005362.1 contains predicted nucleoside-diphosphate-sugar epimerase domain; hypothetical protein 581648 2742422 LJ0691 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964543.1 581016 D 257314 CDS NP_964544.1 42518614 2742292 complement(581866..583203) 1 NC_005362.1 transposase 583203 2742292 LJ0692 Lactobacillus johnsonii NCC 533 transposase NP_964544.1 581866 R 257314 CDS NP_964545.1 42518615 2742518 583303..583767 1 NC_005362.1 transposase 583767 2742518 LJ0693 Lactobacillus johnsonii NCC 533 transposase NP_964545.1 583303 D 257314 CDS NP_964546.1 42518616 2743063 complement(583810..584268) 1 NC_005362.1 contains GAF domain; hypothetical protein 584268 2743063 LJ0694 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964546.1 583810 R 257314 CDS NP_964547.1 42518617 2741897 complement(584316..585527) 1 NC_005362.1 hypothetical protein 585527 2741897 LJ0695 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964547.1 584316 R 257314 CDS NP_964548.1 42518618 2743189 585654..586649 1 NC_005362.1 hypothetical protein 586649 2743189 LJ0696 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964548.1 585654 D 257314 CDS NP_964549.1 42518619 2742366 586717..587283 1 NC_005362.1 3-methyladenine DNA glycosylase 587283 2742366 LJ0697 Lactobacillus johnsonii NCC 533 3-methyladenine DNA glycosylase NP_964549.1 586717 D 257314 CDS NP_964550.1 42518620 2743237 587283..588221 1 NC_005362.1 contains permease domain; hypothetical protein 588221 2743237 LJ0698 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964550.1 587283 D 257314 CDS NP_964551.1 42518621 2743706 588237..589022 1 NC_005362.1 contains CAAX amino terminal protease domain; hypothetical protein 589022 2743706 LJ0699 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964551.1 588237 D 257314 CDS NP_964552.1 42518622 2743276 complement(589061..589813) 1 NC_005362.1 glycerol uptake facilitator protein 589813 2743276 LJ0700 Lactobacillus johnsonii NCC 533 glycerol uptake facilitator protein NP_964552.1 589061 R 257314 CDS NP_964553.1 42518623 2743111 590018..591496 1 NC_005362.1 major facilitator superfamily permease 591496 2743111 LJ0701 Lactobacillus johnsonii NCC 533 major facilitator superfamily permease NP_964553.1 590018 D 257314 CDS NP_964554.1 42518624 2741929 591603..593054 1 NC_005362.1 major facilitator superfamily permease 593054 2741929 LJ0702 Lactobacillus johnsonii NCC 533 major facilitator superfamily permease NP_964554.1 591603 D 257314 CDS NP_964555.1 42518625 2743526 593283..593711 1 NC_005362.1 contains acetyltransferase (GNAT) domain; hypothetical protein 593711 2743526 LJ0703 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964555.1 593283 D 257314 CDS NP_964556.1 42518626 2743404 593837..594922 1 NC_005362.1 ATPase involved in DNA replication initiation domain; hypothetical protein 594922 2743404 LJ0704 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964556.1 593837 D 257314 CDS NP_964557.1 42518627 2742298 complement(594967..595755) 1 NC_005362.1 contains haloacid dehalogenase-like hydrolase domain; hypothetical protein 595755 2742298 LJ0705 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964557.1 594967 R 257314 CDS NP_964558.1 42518628 2743133 595937..596410 1 NC_005362.1 hypothetical protein 596410 2743133 LJ0706 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964558.1 595937 D 257314 CDS NP_964559.1 42518629 2741850 complement(596451..597257) 1 NC_005362.1 contains haloacid dehalogenase-like hydrolase domain; hypothetical protein 597257 2741850 LJ0707 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964559.1 596451 R 257314 CDS NP_964560.1 42518630 2742235 597362..598195 1 NC_005362.1 contains transcriptional regulator helix-turn-helix domain; hypothetical protein 598195 2742235 LJ0708 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964560.1 597362 D 257314 CDS NP_964561.1 42518631 2742536 complement(598304..599638) 1 NC_005362.1 uracil permease 599638 2742536 LJ0709 Lactobacillus johnsonii NCC 533 uracil permease NP_964561.1 598304 R 257314 CDS NP_964562.1 42518632 2742937 599886..600326 1 NC_005362.1 truncated 6-phospho-beta-galactosidase 600326 2742937 LJ0710 Lactobacillus johnsonii NCC 533 truncated 6-phospho-beta-galactosidase NP_964562.1 599886 D 257314 CDS NP_964563.1 42518633 2743467 600466..601554 1 NC_005362.1 contains adenylylsulfate kinase and related kinase domain; hypothetical protein 601554 2743467 LJ0711 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964563.1 600466 D 257314 CDS NP_964564.1 42518634 2743122 601590..602096 1 NC_005362.1 contains phosphoglycerate mutase domain; hypothetical protein 602096 2743122 LJ0712 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964564.1 601590 D 257314 CDS NP_964565.1 42518635 2743668 602185..603105 1 NC_005362.1 glutaminase 603105 2743668 LJ0713 Lactobacillus johnsonii NCC 533 glutaminase NP_964565.1 602185 D 257314 CDS NP_964566.1 42518636 2742575 603246..603866 1 NC_005362.1 contains PAP2 superfamily domain; hypothetical protein 603866 2742575 LJ0714 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964566.1 603246 D 257314 CDS NP_964567.1 42518637 2742487 complement(603956..605311) 1 NC_005362.1 hypothetical protein 605311 2742487 LJ0715 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964567.1 603956 R 257314 CDS NP_964568.1 42518638 2742143 complement(605345..606670) 1 NC_005362.1 aminopeptidase C 606670 2742143 LJ0716 Lactobacillus johnsonii NCC 533 aminopeptidase C NP_964568.1 605345 R 257314 CDS NP_964569.1 42518639 2741985 complement(606697..608364) 1 NC_005362.1 contains amino acid permease domain; hypothetical protein 608364 2741985 LJ0717 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964569.1 606697 R 257314 CDS NP_964570.1 42518640 2742843 complement(608429..609853) 1 NC_005362.1 dipeptidase 609853 2742843 LJ0718 Lactobacillus johnsonii NCC 533 dipeptidase NP_964570.1 608429 R 257314 CDS NP_964571.1 42518641 2742485 complement(609887..611212) 1 NC_005362.1 aminopeptidase C 611212 2742485 LJ0719 Lactobacillus johnsonii NCC 533 aminopeptidase C NP_964571.1 609887 R 257314 CDS NP_964572.1 42518642 2741878 complement(611246..612895) 1 NC_005362.1 contains amino acid permease domain; hypothetical protein 612895 2741878 LJ0720 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964572.1 611246 R 257314 CDS NP_964573.1 42518643 2743442 613419..614795 1 NC_005362.1 contains amino acid permease domain; hypothetical protein 614795 2743442 LJ0721 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964573.1 613419 D 257314 CDS NP_964574.1 42518644 2742311 complement(614888..616105) 1 NC_005362.1 major facilitator superfamily permease 616105 2742311 LJ0722 Lactobacillus johnsonii NCC 533 major facilitator superfamily permease NP_964574.1 614888 R 257314 CDS NP_964575.1 42518645 2742665 complement(616080..616310) 1 NC_005362.1 hypothetical protein 616310 2742665 LJ0723 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964575.1 616080 R 257314 CDS NP_964576.1 42518646 2741848 complement(616325..616735) 1 NC_005362.1 contains bacterial regulatory marR domain; hypothetical protein 616735 2741848 LJ0724 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964576.1 616325 R 257314 CDS NP_964577.1 42518647 2743631 complement(616816..617385) 1 NC_005362.1 hypothetical protein 617385 2743631 LJ0725 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964577.1 616816 R 257314 CDS NP_964578.1 42518648 2742599 complement(617495..617725) 1 NC_005362.1 hypothetical protein 617725 2742599 LJ0726 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964578.1 617495 R 257314 CDS NP_964579.1 42518649 2741963 618138..619220 1 NC_005362.1 contains cellulase M domain; hypothetical protein 619220 2741963 LJ0727 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964579.1 618138 D 257314 CDS NP_964580.1 42518650 2743572 619517..620170 1 NC_005362.1 ABC transporter ATPase component 620170 2743572 LJ0728 Lactobacillus johnsonii NCC 533 ABC transporter ATPase component NP_964580.1 619517 D 257314 CDS NP_964581.1 42518651 2743200 620148..620909 1 NC_005362.1 contains uncharacterized ACR domain; hypothetical protein 620909 2743200 LJ0729 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964581.1 620148 D 257314 CDS NP_964582.1 42518652 2742094 complement(620979..622265) 1 NC_005362.1 contains phosphatidylserine decarboxylase domain; hypothetical protein 622265 2742094 LJ0730 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964582.1 620979 R 257314 CDS NP_964583.1 42518653 2742009 complement(622293..623726) 1 NC_005362.1 arginine/ornithine antiporter 623726 2742009 LJ0731 Lactobacillus johnsonii NCC 533 arginine/ornithine antiporter NP_964583.1 622293 R 257314 CDS NP_964584.1 42518654 2743533 complement(623762..625048) 1 NC_005362.1 contains phosphatidylserine decarboxylase domain; hypothetical protein 625048 2743533 LJ0732 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964584.1 623762 R 257314 CDS NP_964585.1 42518655 2742689 complement(625243..626532) 1 NC_005362.1 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, cellobiose specific 626532 2742689 LJ0733 Lactobacillus johnsonii NCC 533 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, cellobiose specific NP_964585.1 625243 R 257314 CDS NP_964586.1 42518656 2742148 complement(626665..627810) 1 NC_005362.1 contains bacterial regulatory protein ROK domain; hypothetical protein 627810 2742148 LJ0734 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964586.1 626665 R 257314 CDS NP_964587.1 42518657 2743223 627951..628838 1 NC_005362.1 contains bacterial regulatory protein ROK domain; hypothetical protein 628838 2743223 LJ0735 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964587.1 627951 D 257314 CDS NP_964588.1 42518658 2742250 628828..630321 1 NC_005362.1 beta-glucosidase 630321 2742250 LJ0736 Lactobacillus johnsonii NCC 533 beta-glucosidase NP_964588.1 628828 D 257314 CDS NP_964589.1 42518659 2741949 630318..632591 1 NC_005362.1 contains glycosyl hydrolases family 31 domain; catalyzes the transfer of alpha-xylosyl residue from alpha-xyloside to xylose, glucose, mannose, fructose, maltose, isomaltose, nigerose, kojibiose, sucrose, and trehalose; shows higher activity against alpha-xylosyl fluoride, isoprimeverose (6-O-alpha-xylopyranosyl-glucopyranose), and alpha-xyloside in xyloglucan oligosaccharides; alpha-xylosidase YicI 632591 2741949 LJ0737 Lactobacillus johnsonii NCC 533 alpha-xylosidase YicI NP_964589.1 630318 D 257314 CDS NP_964590.1 42518660 2743617 632667..634703 1 NC_005362.1 contains beta-galactosidase domain; hypothetical protein 634703 2743617 LJ0738 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964590.1 632667 D 257314 CDS NP_964591.1 42518661 2743702 635013..635507 1 NC_005362.1 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIB, sorbose specific 635507 2743702 LJ0739 Lactobacillus johnsonii NCC 533 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIB, sorbose specific NP_964591.1 635013 D 257314 CDS NP_964592.1 42518662 2742771 635510..636307 1 NC_005362.1 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, sorbose specific 636307 2742771 LJ0740 Lactobacillus johnsonii NCC 533 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, sorbose specific NP_964592.1 635510 D 257314 CDS NP_964593.1 42518663 2742449 636300..637133 1 NC_005362.1 phosphoenolpyruvate-dependent sugar phosphotransferase system EIID, fructose specific 637133 2742449 LJ0741 Lactobacillus johnsonii NCC 533 phosphoenolpyruvate-dependent sugar phosphotransferase system EIID, fructose specific NP_964593.1 636300 D 257314 CDS NP_964594.1 42518664 2742736 637151..637582 1 NC_005362.1 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA, mannose specific 637582 2742736 LJ0742 Lactobacillus johnsonii NCC 533 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA, mannose specific NP_964594.1 637151 D 257314 CDS NP_964595.1 42518665 2742342 637575..639242 1 NC_005362.1 oligo-1,6-glucosidase 639242 2742342 LJ0743 Lactobacillus johnsonii NCC 533 oligo-1,6-glucosidase NP_964595.1 637575 D 257314 CDS NP_964596.1 42518666 2743529 639235..640215 1 NC_005362.1 contains bacterial regulatory lacI domain; hypothetical protein 640215 2743529 LJ0744 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964596.1 639235 D 257314 CDS NP_964597.1 42518667 2742734 640439..641932 1 NC_005362.1 dipeptide/tripeptide permease 641932 2742734 LJ0745 Lactobacillus johnsonii NCC 533 dipeptide/tripeptide permease NP_964597.1 640439 D 257314 CDS NP_964598.1 42518668 2743382 642114..643520 1 NC_005362.1 hypothetical protein 643520 2743382 LJ0746 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964598.1 642114 D 257314 CDS NP_964599.1 42518669 2743731 643611..644849 1 NC_005362.1 major facilitator superfamily permease 644849 2743731 LJ0747 Lactobacillus johnsonii NCC 533 major facilitator superfamily permease NP_964599.1 643611 D 257314 CDS NP_964600.1 42518670 2743563 644949..645803 1 NC_005362.1 hypothetical protein 645803 2743563 LJ0748 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964600.1 644949 D 257314 CDS NP_964601.1 42518671 2743739 645841..646212 1 NC_005362.1 contains bacterial regulatory protein marR domain; hypothetical protein 646212 2743739 LJ0749 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964601.1 645841 D 257314 CDS NP_964602.1 42518672 2743678 646282..648015 1 NC_005362.1 ABC transporter ATPase and permease components 648015 2743678 LJ0750 Lactobacillus johnsonii NCC 533 ABC transporter ATPase and permease components NP_964602.1 646282 D 257314 CDS NP_964603.1 42518673 2743760 648008..649777 1 NC_005362.1 ABC transporter ATPase and permease components 649777 2743760 LJ0751 Lactobacillus johnsonii NCC 533 ABC transporter ATPase and permease components NP_964603.1 648008 D 257314 CDS NP_964604.1 42518674 2743537 649841..650662 1 NC_005362.1 glutamine ABC transporter solute-binding component 650662 2743537 LJ0752 Lactobacillus johnsonii NCC 533 glutamine ABC transporter solute-binding component NP_964604.1 649841 D 257314 CDS NP_964605.1 42518675 2742961 651106..651855 1 NC_005362.1 glutamine ABC transporter ATPase component 651855 2742961 LJ0753 Lactobacillus johnsonii NCC 533 glutamine ABC transporter ATPase component NP_964605.1 651106 D 257314 CDS NP_964606.1 42518676 2742460 651857..652681 1 NC_005362.1 glutamine ABC transporter solute-binding component 652681 2742460 LJ0754 Lactobacillus johnsonii NCC 533 glutamine ABC transporter solute-binding component NP_964606.1 651857 D 257314 CDS NP_964607.1 42518677 2742591 652678..653316 1 NC_005362.1 glutamine ABC transporter permease component 653316 2742591 LJ0755 Lactobacillus johnsonii NCC 533 glutamine ABC transporter permease component NP_964607.1 652678 D 257314 CDS NP_964608.1 42518678 2741964 653330..653980 1 NC_005362.1 glutamine ABC transporter permease component 653980 2741964 LJ0756 Lactobacillus johnsonii NCC 533 glutamine ABC transporter permease component NP_964608.1 653330 D 257314 CDS NP_964609.1 42518679 2742393 654165..654554 1 NC_005362.1 hypothetical protein 654554 2742393 LJ0757 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964609.1 654165 D 257314 CDS NP_964610.1 42518680 2742137 complement(654614..656272) 1 NC_005362.1 trehalose-6-phosphate hydrolase 656272 2742137 LJ0758 Lactobacillus johnsonii NCC 533 trehalose-6-phosphate hydrolase NP_964610.1 654614 R 257314 CDS NP_964611.1 42518681 2742210 complement(656288..657190) 1 NC_005362.1 trehalose operon repressor 657190 2742210 LJ0759 Lactobacillus johnsonii NCC 533 trehalose operon repressor NP_964611.1 656288 R 257314 CDS NP_964612.1 42518682 2743011 657207..659135 1 NC_005362.1 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, trhalose specific 659135 2743011 LJ0760 Lactobacillus johnsonii NCC 533 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, trhalose specific NP_964612.1 657207 D 257314 CDS NP_964613.1 42518683 2742246 659335..660129 1 NC_005362.1 hypothetical protein 660129 2742246 LJ0761 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964613.1 659335 D 257314 CDS NP_964614.1 42518684 2743164 660137..660364 1 NC_005362.1 hypothetical protein 660364 2743164 LJ0762 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964614.1 660137 D 257314 CDS NP_964615.1 42518685 2742676 complement(660391..661026) 1 NC_005362.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 661026 2742676 LJ0763 Lactobacillus johnsonii NCC 533 uridine kinase NP_964615.1 660391 R 257314 CDS NP_964616.1 42518686 2743244 661355..661507 1 NC_005362.1 lactacin F two-component system inducer peptide precursor 661507 2743244 LJ0763b Lactobacillus johnsonii NCC 533 lactacin F two-component system inducer peptide precursor NP_964616.1 661355 D 257314 CDS NP_964617.1 42518687 2742496 661510..662817 1 NC_005362.1 lactacin F two-component system histidine kinase 662817 2742496 LJ0764 Lactobacillus johnsonii NCC 533 lactacin F two-component system histidine kinase NP_964617.1 661510 D 257314 CDS NP_964618.1 42518688 2743034 662960..664117 1 NC_005362.1 transposase 664117 2743034 LJ0765 Lactobacillus johnsonii NCC 533 transposase NP_964618.1 662960 D 257314 CDS NP_964619.1 42518689 2743325 664315..665112 1 NC_005362.1 lactacin F two-component system response regulator 665112 2743325 LJ0766 Lactobacillus johnsonii NCC 533 lactacin F two-component system response regulator NP_964619.1 664315 D 257314 CDS NP_964620.1 42518690 2743582 665125..667284 1 NC_005362.1 lactacin F ABC transporter permease component 667284 2743582 LJ0767 Lactobacillus johnsonii NCC 533 lactacin F ABC transporter permease component NP_964620.1 665125 D 257314 CDS NP_964621.1 42518691 2742604 667295..667888 1 NC_005362.1 lactacin F transporter auxillary protein 667888 2742604 LJ0768 Lactobacillus johnsonii NCC 533 lactacin F transporter auxillary protein NP_964621.1 667295 D 257314 CDS NP_964622.1 42518692 2743693 668015..668242 1 NC_005362.1 bacteriocin lactacin F, subunit LafA precursor 668242 2743693 LJ0769 Lactobacillus johnsonii NCC 533 bacteriocin lactacin F, subunit LafA precursor NP_964622.1 668015 D 257314 CDS NP_964623.1 42518693 2742888 668253..668441 1 NC_005362.1 bacteriocin lactacin F, subunit LafX precursor 668441 2742888 LJ0769b Lactobacillus johnsonii NCC 533 bacteriocin lactacin F, subunit LafX precursor NP_964623.1 668253 D 257314 CDS NP_964624.1 42518694 2743159 668528..668902 1 NC_005362.1 lactacin F immunity protein 668902 2743159 LJ0770 Lactobacillus johnsonii NCC 533 lactacin F immunity protein NP_964624.1 668528 D 257314 CDS NP_964625.1 42518695 2743351 complement(669022..669237) 1 NC_005362.1 hypothetical protein 669237 2743351 LJ0771 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964625.1 669022 R 257314 CDS NP_964626.1 42518696 2742104 669262..670311 1 NC_005362.1 transposase 670311 2742104 LJ0772 Lactobacillus johnsonii NCC 533 transposase NP_964626.1 669262 D 257314 CDS NP_964627.1 42518697 2742632 670446..670853 1 NC_005362.1 lactacin F two-component system response regulator fragment 670853 2742632 LJ0773 Lactobacillus johnsonii NCC 533 lactacin F two-component system response regulator fragment NP_964627.1 670446 D 257314 CDS NP_964628.1 42518698 2743355 670866..673025 1 NC_005362.1 lactacin F ABC transporter permease component 673025 2743355 LJ0774 Lactobacillus johnsonii NCC 533 lactacin F ABC transporter permease component NP_964628.1 670866 D 257314 CDS NP_964629.1 42518699 2742849 673036..673629 1 NC_005362.1 lactacin F transporter auxillary protein 673629 2742849 LJ0775 Lactobacillus johnsonii NCC 533 lactacin F transporter auxillary protein NP_964629.1 673036 D 257314 CDS NP_964630.1 42518700 2743632 673779..673973 1 NC_005362.1 hypothetical protein 673973 2743632 LJ0775b Lactobacillus johnsonii NCC 533 hypothetical protein NP_964630.1 673779 D 257314 CDS NP_964631.1 42518701 2743475 674086..674376 1 NC_005362.1 hypothetical protein 674376 2743475 LJ0776 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964631.1 674086 D 257314 CDS NP_964632.1 42518702 2742902 674461..675693 1 NC_005362.1 contains CAAX amino terminal protease domain; hypothetical protein 675693 2742902 LJ0777 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964632.1 674461 D 257314 CDS NP_964633.1 42518703 2742100 675702..676064 1 NC_005362.1 hypothetical protein 676064 2742100 LJ0778 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964633.1 675702 D 257314 CDS NP_964634.1 42518704 2742513 676064..676282 1 NC_005362.1 hypothetical protein 676282 2742513 LJ0779 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964634.1 676064 D 257314 CDS NP_964635.1 42518705 2741914 676269..676499 1 NC_005362.1 hypothetical protein 676499 2741914 LJ0780 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964635.1 676269 D 257314 CDS NP_964636.1 42518706 2742994 676622..676936 1 NC_005362.1 hypothetical protein 676936 2742994 LJ0781 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964636.1 676622 D 257314 CDS NP_964637.1 42518707 2743289 676939..677223 1 NC_005362.1 hypothetical protein 677223 2743289 LJ0782 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964637.1 676939 D 257314 CDS NP_964638.1 42518708 2742618 677311..679011 1 NC_005362.1 contains E1-E2 ATPase domain; hypothetical protein 679011 2742618 LJ0783 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964638.1 677311 D 257314 CDS NP_964639.1 42518709 2742988 678983..680119 1 NC_005362.1 contains E1-E2 ATPase domain; hypothetical protein 680119 2742988 LJ0784 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964639.1 678983 D 257314 CDS NP_964640.1 42518710 2742370 680190..681038 1 NC_005362.1 contains UPF0028 domain; hypothetical protein 681038 2742370 LJ0785 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964640.1 680190 D 257314 CDS NP_964641.1 42518711 2743257 681139..682632 1 NC_005362.1 ABC transporter permease component 682632 2743257 LJ0786 Lactobacillus johnsonii NCC 533 ABC transporter permease component NP_964641.1 681139 D 257314 CDS NP_964642.1 42518712 2742138 682619..683350 1 NC_005362.1 ABC transporter ATPase component 683350 2742138 LJ0787 Lactobacillus johnsonii NCC 533 ABC transporter ATPase component NP_964642.1 682619 D 257314 CDS NP_964643.1 42518713 2741927 683395..683967 1 NC_005362.1 contains acetyltransferase (GNAT) domain; hypothetical protein 683967 2741927 LJ0788 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964643.1 683395 D 257314 CDS NP_964644.1 42518714 2742212 684085..684954 1 NC_005362.1 ABC transporter solute-binding component 684954 2742212 LJ0789 Lactobacillus johnsonii NCC 533 ABC transporter solute-binding component NP_964644.1 684085 D 257314 CDS NP_964645.1 42518715 2742336 684971..685963 1 NC_005362.1 ABC transporter permease component 685963 2742336 LJ0790 Lactobacillus johnsonii NCC 533 ABC transporter permease component NP_964645.1 684971 D 257314 CDS NP_964646.1 42518716 2742592 685963..686853 1 NC_005362.1 ABC transporter permease component 686853 2742592 LJ0791 Lactobacillus johnsonii NCC 533 ABC transporter permease component NP_964646.1 685963 D 257314 CDS NP_964647.1 42518717 2742742 686864..687664 1 NC_005362.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 687664 2742742 LJ0792 Lactobacillus johnsonii NCC 533 phosphate transporter ATP-binding protein NP_964647.1 686864 D 257314 CDS NP_964648.1 42518718 2742698 687675..688430 1 NC_005362.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate ABC transporter ATP-binding protein 688430 2742698 LJ0793 Lactobacillus johnsonii NCC 533 phosphate ABC transporter ATP-binding protein NP_964648.1 687675 D 257314 CDS NP_964649.1 42518719 2743481 688447..689130 1 NC_005362.1 phosphate uptake regulator 689130 2743481 LJ0794 Lactobacillus johnsonii NCC 533 phosphate uptake regulator NP_964649.1 688447 D 257314 CDS NP_964650.1 42518720 2742884 689342..690880 1 NC_005362.1 contains short chain fatty acid transporter domain; hypothetical protein 690880 2742884 LJ0795 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964650.1 689342 D 257314 CDS NP_964651.1 42518721 2743412 690964..691431 1 NC_005362.1 ferritin-like protein; non-heme iron-containing ferritin 691431 2743412 LJ0796 Lactobacillus johnsonii NCC 533 non-heme iron-containing ferritin NP_964651.1 690964 D 257314 CDS NP_964652.1 42518722 2741971 691521..692447 1 NC_005362.1 ribokinase 692447 2741971 LJ0797 Lactobacillus johnsonii NCC 533 ribokinase NP_964652.1 691521 D 257314 CDS NP_964653.1 42518723 2742774 692447..693145 1 NC_005362.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 693145 2742774 LJ0798 Lactobacillus johnsonii NCC 533 ribose-5-phosphate isomerase A NP_964653.1 692447 D 257314 CDS NP_964654.1 42518724 2743581 693262..694185 1 NC_005362.1 contains inosine-uridine nucleoside N-ribohydrolase domain; hypothetical protein 694185 2743581 LJ0799 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964654.1 693262 D 257314 CDS NP_964655.1 42518725 2743578 694185..694913 1 NC_005362.1 contains bacterial regulatory gntR domain; hypothetical protein 694913 2743578 LJ0800 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964655.1 694185 D 257314 CDS NP_964656.1 42518726 2742489 complement(694979..695305) 1 NC_005362.1 contains inosine-uridine preferring nucleoside domain; hypothetical protein 695305 2742489 LJ0801 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964656.1 694979 R 257314 CDS NP_964657.1 42518727 2743736 695570..696355 1 NC_005362.1 contains bacterial regulatory deoR domain; hypothetical protein 696355 2743736 LJ0802 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964657.1 695570 D 257314 CDS NP_964658.1 42518728 2743703 696462..698867 1 NC_005362.1 putative phosphoketolase 698867 2743703 LJ0803 Lactobacillus johnsonii NCC 533 putative phosphoketolase NP_964658.1 696462 D 257314 CDS NP_964659.1 42518729 2743418 699028..699684 1 NC_005362.1 contains nitroreductase domain; hypothetical protein 699684 2743418 LJ0804 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964659.1 699028 D 257314 CDS NP_964660.1 42518730 2742825 699815..700507 1 NC_005362.1 hypothetical protein 700507 2742825 LJ0805 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964660.1 699815 D 257314 CDS NP_964661.1 42518731 2742486 700558..700878 1 NC_005362.1 contains CBS domain; hypothetical protein 700878 2742486 LJ0806 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964661.1 700558 D 257314 CDS NP_964662.1 42518732 2742749 700850..701941 1 NC_005362.1 contains CBS domain; hypothetical protein 701941 2742749 LJ0807 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964662.1 700850 D 257314 CDS NP_964663.1 42518733 2742998 702039..702608 1 NC_005362.1 hypoxanthine-guanine phosphoribosyltransferase 702608 2742998 LJ0808 Lactobacillus johnsonii NCC 533 hypoxanthine-guanine phosphoribosyltransferase NP_964663.1 702039 D 257314 CDS NP_964664.1 42518734 2743727 complement(702699..704009) 1 NC_005362.1 amino acid permease 704009 2743727 LJ0809 Lactobacillus johnsonii NCC 533 amino acid permease NP_964664.1 702699 R 257314 CDS NP_964665.1 42518735 2743480 704130..704840 1 NC_005362.1 hypothetical protein 704840 2743480 LJ0810 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964665.1 704130 D 257314 CDS NP_964666.1 42518736 2742519 704851..706080 1 NC_005362.1 contains DEAD/DEAH box helicase domain; hypothetical protein 706080 2742519 LJ0811 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964666.1 704851 D 257314 CDS NP_964667.1 42518737 2742581 706080..707411 1 NC_005362.1 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, cellobiose specific 707411 2742581 LJ0812 Lactobacillus johnsonii NCC 533 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, cellobiose specific NP_964667.1 706080 D 257314 CDS NP_964668.1 42518738 2743560 complement(707627..708904) 1 NC_005362.1 transposase 708904 2743560 LJ0813 Lactobacillus johnsonii NCC 533 transposase NP_964668.1 707627 R 257314 CDS NP_964669.1 42518739 2742369 complement(709084..709455) 1 NC_005362.1 hypothetical protein 709455 2742369 LJ0814 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964669.1 709084 R 257314 CDS NP_964670.1 42518740 2743728 complement(709488..711656) 1 NC_005362.1 ATP-dependent Clp protease ATP-binding subunit clpE 711656 2743728 LJ0815 Lactobacillus johnsonii NCC 533 ATP-dependent Clp protease ATP-binding subunit clpE NP_964670.1 709488 R 257314 CDS NP_964671.1 42518741 2743730 712163..712429 1 NC_005362.1 phosphocarrier protein HPr 712429 2743730 LJ0816 Lactobacillus johnsonii NCC 533 phosphocarrier protein HPr NP_964671.1 712163 D 257314 CDS NP_964672.1 42518742 2742657 712429..714168 1 NC_005362.1 phosphoenolpyruvate-protein phosphotransferase (enzyme I) 714168 2742657 LJ0817 Lactobacillus johnsonii NCC 533 phosphoenolpyruvate-protein phosphotransferase (enzyme I) NP_964672.1 712429 D 257314 CDS NP_964673.1 42518743 2742110 714364..714756 1 NC_005362.1 contains arsenate reductase domain; hypothetical protein 714756 2742110 LJ0818 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964673.1 714364 D 257314 CDS NP_964674.1 42518744 2742703 714859..715512 1 NC_005362.1 enables recognition and targeting of proteins for proteolysis, involved in negative regulation of competence; adaptor protein 715512 2742703 LJ0819 Lactobacillus johnsonii NCC 533 adaptor protein NP_964674.1 714859 D 257314 CDS NP_964675.1 42518745 2741945 715569..716450 1 NC_005362.1 hypothetical protein 716450 2741945 LJ0820 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964675.1 715569 D 257314 CDS NP_964676.1 42518746 2741958 complement(716456..717154) 1 NC_005362.1 hypothetical protein 717154 2741958 LJ0821 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964676.1 716456 R 257314 CDS NP_964677.1 42518747 2742946 complement(717132..717755) 1 NC_005362.1 hypothetical protein 717755 2742946 LJ0822 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964677.1 717132 R 257314 CDS NP_964678.1 42518748 2743401 717833..718459 1 NC_005362.1 contains guanosine polyphosphate pyrophosphohydrolase/synthetase domain; hypothetical protein 718459 2743401 LJ0823 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964678.1 717833 D 257314 CDS NP_964679.1 42518749 2742061 718459..719271 1 NC_005362.1 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 719271 ppnK 2742061 ppnK Lactobacillus johnsonii NCC 533 inorganic polyphosphate/ATP-NAD kinase NP_964679.1 718459 D 257314 CDS NP_964680.1 42518750 2743246 719271..720170 1 NC_005362.1 contains RNA pseudouridylate synthase domain; hypothetical protein 720170 2743246 LJ0825 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964680.1 719271 D 257314 CDS NP_964681.1 42518751 2743639 720270..722045 1 NC_005362.1 in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever; myosin-cross-reactive antigen 722045 2743639 LJ0826 Lactobacillus johnsonii NCC 533 myosin-cross-reactive antigen NP_964681.1 720270 D 257314 CDS NP_964682.1 42518752 2741855 complement(722113..723342) 1 NC_005362.1 contains ATPase involved in DNA replication initiation domain; hypothetical protein 723342 2741855 LJ0827 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964682.1 722113 R 257314 CDS NP_964683.1 42518753 2742474 complement(723412..724434) 1 NC_005362.1 hypothetical protein 724434 2742474 LJ0828 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964683.1 723412 R 257314 CDS NP_964684.1 42518754 2743725 724574..724954 1 NC_005362.1 hypothetical protein 724954 2743725 LJ0829 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964684.1 724574 D 257314 CDS NP_964685.1 42518755 2742897 724966..726147 1 NC_005362.1 contains DUF20 domain; hypothetical protein 726147 2742897 LJ0830 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964685.1 724966 D 257314 CDS NP_964686.1 42518756 2742982 726220..726777 1 NC_005362.1 contains SpoU rRNA methylase domain; hypothetical protein 726777 2742982 LJ0831 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964686.1 726220 D 257314 CDS NP_964687.1 42518757 2743334 726779..727213 1 NC_005362.1 hypothetical protein 727213 2743334 LJ0832 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964687.1 726779 D 257314 CDS NP_964688.1 42518758 2742511 727235..729658 1 NC_005362.1 stage III sporulation protein E 729658 2742511 LJ0833 Lactobacillus johnsonii NCC 533 stage III sporulation protein E NP_964688.1 727235 D 257314 CDS NP_964689.1 42518759 2742840 729661..730875 1 NC_005362.1 contains predicted Zn-dependent peptidase domain; hypothetical protein 730875 2742840 LJ0834 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964689.1 729661 D 257314 CDS NP_964690.1 42518760 2742934 730872..732107 1 NC_005362.1 contains peptidase family M16 domain; hypothetical protein 732107 2742934 LJ0835 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964690.1 730872 D 257314 CDS NP_964691.1 42518761 2743217 732108..732836 1 NC_005362.1 contains short chain dehydrogenase domain; hypothetical protein 732836 2743217 LJ0836 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964691.1 732108 D 257314 CDS NP_964692.1 42518762 2742786 732895..733944 1 NC_005362.1 hypothetical protein 733944 2742786 LJ0837 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964692.1 732895 D 257314 CDS NP_964693.1 42518763 2742234 733944..734507 1 NC_005362.1 CDP-diacylglycerol--glycerol-3-phosphate3- phosphatidyltransferase 734507 2742234 LJ0838 Lactobacillus johnsonii NCC 533 CDP-diacylglycerol--glycerol-3-phosphate3- phosphatidyltransferase NP_964693.1 733944 D 257314 CDS NP_964694.1 42518764 2743017 734670..735752 1 NC_005362.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 735752 recA 2743017 recA Lactobacillus johnsonii NCC 533 recombinase A NP_964694.1 734670 D 257314 CDS NP_964695.1 42518765 2743397 735879..737501 1 NC_005362.1 contains HD domain; protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase 737501 2743397 LJ0840 Lactobacillus johnsonii NCC 533 phosphodiesterase NP_964695.1 735879 D 257314 CDS NP_964696.1 42518766 2743169 737603..738745 1 NC_005362.1 contains glycosyl transferase domain; hypothetical protein 738745 2743169 LJ0841 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964696.1 737603 D 257314 CDS NP_964697.1 42518767 2743746 complement(738763..739428) 1 NC_005362.1 contains UPF0029 domain; hypothetical protein 739428 2743746 LJ0842 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964697.1 738763 R 257314 CDS NP_964698.1 42518768 2741873 739552..740739 1 NC_005362.1 COMF operon protein 1 740739 2741873 LJ0843 Lactobacillus johnsonii NCC 533 COMF operon protein 1 NP_964698.1 739552 D 257314 CDS NP_964699.1 42518769 2742350 740736..741407 1 NC_005362.1 COMF operon protein 3 741407 2742350 LJ0844 Lactobacillus johnsonii NCC 533 COMF operon protein 3 NP_964699.1 740736 D 257314 CDS NP_964700.1 42518770 2741988 741489..742034 1 NC_005362.1 contains sigma 54 modulation domain; hypothetical protein 742034 2741988 LJ0845 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964700.1 741489 D 257314 CDS NP_964701.1 42518771 2742762 742192..744591 1 NC_005362.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA 744591 secA 2742762 secA Lactobacillus johnsonii NCC 533 preprotein translocase subunit SecA NP_964701.1 742192 D 257314 CDS NP_964702.1 42518772 2743052 744791..745789 1 NC_005362.1 peptide chain release factor 2 745789 2743052 LJ0847 Lactobacillus johnsonii NCC 533 peptide chain release factor 2 NP_964702.1 744791 D 257314 CDS NP_964703.1 42518773 2743670 745808..746086 1 NC_005362.1 hypothetical protein 746086 2743670 LJ0848 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964703.1 745808 D 257314 CDS NP_964704.1 42518774 2743553 746079..747038 1 NC_005362.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 747038 2743553 LJ0849 Lactobacillus johnsonii NCC 533 HPr kinase/phosphorylase NP_964704.1 746079 D 257314 CDS NP_964705.1 42518775 2741943 747035..747871 1 NC_005362.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 747871 2741943 LJ0850 Lactobacillus johnsonii NCC 533 prolipoprotein diacylglyceryl transferase NP_964705.1 747035 D 257314 CDS NP_964706.1 42518776 2743066 747908..748927 1 NC_005362.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 748927 gpsA 2743066 gpsA Lactobacillus johnsonii NCC 533 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase NP_964706.1 747908 D 257314 CDS NP_964707.1 42518777 2742984 748999..749934 1 NC_005362.1 thioredoxin reductase 749934 2742984 LJ0852 Lactobacillus johnsonii NCC 533 thioredoxin reductase NP_964707.1 748999 D 257314 CDS NP_964708.1 42518778 2741903 complement(750021..751013) 1 NC_005362.1 UDP-glucose 4-epimerase 751013 2741903 LJ0853 Lactobacillus johnsonii NCC 533 UDP-glucose 4-epimerase NP_964708.1 750021 R 257314 CDS NP_964709.1 42518779 2742746 complement(751045..751998) 1 NC_005362.1 beta-galactosidase small subunit 751998 2742746 LJ0854 Lactobacillus johnsonii NCC 533 beta-galactosidase small subunit NP_964709.1 751045 R 257314 CDS NP_964710.1 42518780 2742410 complement(751982..753862) 1 NC_005362.1 beta-galactosidase large subunit 753862 2742410 LJ0855 Lactobacillus johnsonii NCC 533 beta-galactosidase large subunit NP_964710.1 751982 R 257314 CDS NP_964711.1 42518781 2742463 754076..755086 1 NC_005362.1 lactose operon repressor 755086 2742463 LJ0856 Lactobacillus johnsonii NCC 533 lactose operon repressor NP_964711.1 754076 D 257314 CDS NP_964712.1 42518782 2742065 755272..757236 1 NC_005362.1 lactose permease 757236 2742065 LJ0857 Lactobacillus johnsonii NCC 533 lactose permease NP_964712.1 755272 D 257314 CDS NP_964713.1 42518783 2743501 757248..759254 1 NC_005362.1 beta-galactosidase 759254 2743501 LJ0858 Lactobacillus johnsonii NCC 533 beta-galactosidase NP_964713.1 757248 D 257314 CDS NP_964714.1 42518784 2742333 759382..760551 1 NC_005362.1 catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; galactokinase 760551 2742333 LJ0859 Lactobacillus johnsonii NCC 533 galactokinase NP_964714.1 759382 D 257314 CDS NP_964715.1 42518785 2743600 760570..762057 1 NC_005362.1 catalyzes the formation of alpha-D-glucose 1-phosphate and UDP-galactose from UDP-glucose and alpha-D-galactose 1-phosphate in galactose metabolism; galactose-1-phosphate uridylyltransferase 762057 2743600 LJ0860 Lactobacillus johnsonii NCC 533 galactose-1-phosphate uridylyltransferase NP_964715.1 760570 D 257314 CDS NP_964716.1 42518786 2742085 762041..763027 1 NC_005362.1 aldose 1-epimerase 763027 2742085 LJ0861 Lactobacillus johnsonii NCC 533 aldose 1-epimerase NP_964716.1 762041 D 257314 CDS NP_964717.1 42518787 2742140 763174..764898 1 NC_005362.1 phosphomannomutase 764898 2742140 LJ0862 Lactobacillus johnsonii NCC 533 phosphomannomutase NP_964717.1 763174 D 257314 CDS NP_964718.1 42518788 2742053 764997..767012 1 NC_005362.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 767012 2742053 LJ0863 Lactobacillus johnsonii NCC 533 excinuclease ABC subunit B NP_964718.1 764997 D 257314 CDS NP_964719.1 42518789 2742026 767027..769894 1 NC_005362.1 excinuclease ABC subunit A 769894 2742026 LJ0864 Lactobacillus johnsonii NCC 533 excinuclease ABC subunit A NP_964719.1 767027 D 257314 CDS NP_964720.1 42518790 2743131 769944..770483 1 NC_005362.1 hypothetical protein 770483 2743131 LJ0865 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964720.1 769944 D 257314 CDS NP_964721.1 42518791 2743280 770592..771467 1 NC_005362.1 contains uncharacterized BCR domain; hypothetical protein 771467 2743280 LJ0866 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964721.1 770592 D 257314 CDS NP_964722.1 42518792 2742683 771478..772515 1 NC_005362.1 contains UPF0052 region; hypothetical protein 772515 2742683 LJ0867 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964722.1 771478 D 257314 CDS NP_964723.1 42518793 2742841 772519..773460 1 NC_005362.1 contains DUF199 region; hypothetical protein 773460 2742841 LJ0868 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964723.1 772519 D 257314 CDS NP_964724.1 42518794 2741888 complement(773513..774100) 1 NC_005362.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 774100 clpP 2741888 clpP Lactobacillus johnsonii NCC 533 ATP-dependent Clp protease proteolytic subunit NP_964724.1 773513 R 257314 CDS NP_964725.1 42518795 2742260 complement(774242..775690) 1 NC_005362.1 amino acid permease 775690 2742260 LJ0870 Lactobacillus johnsonii NCC 533 amino acid permease NP_964725.1 774242 R 257314 CDS NP_964726.1 42518796 2743503 776127..777158 1 NC_005362.1 hypothetical protein 777158 2743503 LJ0871 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964726.1 776127 D 257314 CDS NP_964727.1 42518797 2742727 777213..778229 1 NC_005362.1 glyceraldehyde 3-phosphate dehydrogenase 778229 2742727 LJ0872 Lactobacillus johnsonii NCC 533 glyceraldehyde 3-phosphate dehydrogenase NP_964727.1 777213 D 257314 CDS NP_964728.1 42518798 2742692 778336..779547 1 NC_005362.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 779547 pgk 2742692 pgk Lactobacillus johnsonii NCC 533 phosphoglycerate kinase NP_964728.1 778336 D 257314 CDS NP_964729.1 42518799 2742648 779566..780321 1 NC_005362.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 780321 tpiA 2742648 tpiA Lactobacillus johnsonii NCC 533 triosephosphate isomerase NP_964729.1 779566 D 257314 CDS NP_964730.1 42518800 2742817 780368..781666 1 NC_005362.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 781666 eno 2742817 eno Lactobacillus johnsonii NCC 533 phosphopyruvate hydratase NP_964730.1 780368 D 257314 CDS NP_964731.1 42518801 2742556 781790..782023 1 NC_005362.1 preprotein translocase subunit SecG 782023 secG 2742556 secG Lactobacillus johnsonii NCC 533 preprotein translocase subunit SecG NP_964731.1 781790 D 257314 CDS NP_964732.1 42518802 2743542 782107..784449 1 NC_005362.1 ribonuclease R 784449 2743542 LJ0877 Lactobacillus johnsonii NCC 533 ribonuclease R NP_964732.1 782107 D 257314 CDS NP_964733.1 42518803 2743591 784464..784919 1 NC_005362.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 784919 smpB 2743591 smpB Lactobacillus johnsonii NCC 533 SsrA-binding protein NP_964733.1 784464 D 257314 CDS NP_964734.1 42518804 2742921 784932..785501 1 NC_005362.1 contains acetyltransferase (GNAT) domain; hypothetical protein 785501 2742921 LJ0879 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964734.1 784932 D 257314 CDS NP_964735.1 42518805 2743685 785688..786257 1 NC_005362.1 contains transcriptional regulator helix-turn-helix domain, AraR family; hypothetical protein 786257 2743685 LJ0880 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964735.1 785688 D 257314 CDS NP_964736.1 42518806 2742397 complement(786254..786769) 1 NC_005362.1 hypothetical protein 786769 2742397 LJ0881 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964736.1 786254 R 257314 CDS NP_964737.1 42518807 2742167 complement(786793..787659) 1 NC_005362.1 contains haloacid dehalogenase-like hydrolase domain; hypothetical protein 787659 2742167 LJ0882 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964737.1 786793 R 257314 CDS NP_964738.1 42518808 2743712 787736..788431 1 NC_005362.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 788431 2743712 LJ0883 Lactobacillus johnsonii NCC 533 uracil-DNA glycosylase NP_964738.1 787736 D 257314 CDS NP_964739.1 42518809 2742678 788505..789482 1 NC_005362.1 in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase 789482 eutD 2742678 eutD Lactobacillus johnsonii NCC 533 phosphotransacetylase NP_964739.1 788505 D 257314 CDS NP_964740.1 42518810 2742433 789484..789960 1 NC_005362.1 contains uncharacterized P-loop hydrolase UPF0079 domain; hypothetical protein 789960 2742433 LJ0885 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964740.1 789484 D 257314 CDS NP_964741.1 42518811 2742949 complement(789977..790510) 1 NC_005362.1 contains exonuclease domain; hypothetical protein 790510 2742949 LJ0886 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964741.1 789977 R 257314 CDS NP_964742.1 42518812 2742847 790628..791533 1 NC_005362.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 791533 murB 2742847 murB Lactobacillus johnsonii NCC 533 UDP-N-acetylenolpyruvoylglucosamine reductase NP_964742.1 790628 D 257314 CDS NP_964743.1 42518813 2742720 791599..792690 1 NC_005362.1 spermidine/putrescine ABC transporter ATPase 792690 2742720 LJ0888 Lactobacillus johnsonii NCC 533 spermidine/putrescine ABC transporter ATPase NP_964743.1 791599 D 257314 CDS NP_964744.1 42518814 2742885 792694..793506 1 NC_005362.1 spermidine/putrescine ABC transporter permease 793506 2742885 LJ0889 Lactobacillus johnsonii NCC 533 spermidine/putrescine ABC transporter permease NP_964744.1 792694 D 257314 CDS NP_964745.1 42518815 2743523 793503..794300 1 NC_005362.1 spermidine/putrescine ABC transporter permease 794300 2743523 LJ0890 Lactobacillus johnsonii NCC 533 spermidine/putrescine ABC transporter permease NP_964745.1 793503 D 257314 CDS NP_964746.1 42518816 2742718 794297..795370 1 NC_005362.1 spermidine/putrescine ABC transporter solute-binding component 795370 2742718 LJ0891 Lactobacillus johnsonii NCC 533 spermidine/putrescine ABC transporter solute-binding component NP_964746.1 794297 D 257314 CDS NP_964747.1 42518817 2742264 795411..796259 1 NC_005362.1 contains DUF147 domain; hypothetical protein 796259 2742264 LJ0892 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964747.1 795411 D 257314 CDS NP_964748.1 42518818 2742906 796256..797224 1 NC_005362.1 hypothetical protein 797224 2742906 LJ0893 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964748.1 796256 D 257314 CDS NP_964749.1 42518819 2742017 797237..798604 1 NC_005362.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 798604 glmM 2742017 glmM Lactobacillus johnsonii NCC 533 phosphoglucosamine mutase NP_964749.1 797237 D 257314 CDS NP_964750.1 42518820 2742228 798784..799599 1 NC_005362.1 contains predicted hydrolases of the HAD superfamily domain; hypothetical protein 799599 2742228 LJ0895 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964750.1 798784 D 257314 CDS NP_964751.1 42518821 2743413 799592..799981 1 NC_005362.1 contains CrcB-like domain; hypothetical protein 799981 2743413 LJ0896 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964751.1 799592 D 257314 CDS NP_964752.1 42518822 2742954 799978..800337 1 NC_005362.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 800337 2742954 LJ0897 Lactobacillus johnsonii NCC 533 camphor resistance protein CrcB NP_964752.1 799978 D 257314 CDS NP_964753.1 42518823 2742010 complement(800392..801609) 1 NC_005362.1 hypothetical protein 801609 2742010 LJ0898 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964753.1 800392 R 257314 CDS NP_964754.1 42518824 2742907 801721..802428 1 NC_005362.1 hypothetical protein 802428 2742907 LJ0899 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964754.1 801721 D 257314 CDS NP_964755.1 42518825 2743466 802431..803207 1 NC_005362.1 contains alpha/beta hydrolase fold domain; hypothetical protein 803207 2743466 LJ0900 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964755.1 802431 D 257314 CDS NP_964756.1 42518826 2743393 complement(803252..804142) 1 NC_005362.1 contains lipoprotein domain; hypothetical protein 804142 2743393 LJ0901 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964756.1 803252 R 257314 CDS NP_964757.1 42518827 2742863 804306..805514 1 NC_005362.1 DNA/pantothenate metabolism flavoprotein 805514 2742863 LJ0902 Lactobacillus johnsonii NCC 533 DNA/pantothenate metabolism flavoprotein NP_964757.1 804306 D 257314 CDS NP_964758.1 42518828 2743423 805511..806026 1 NC_005362.1 hypothetical protein 806026 2743423 LJ0903 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964758.1 805511 D 257314 CDS NP_964759.1 42518829 2742500 806100..806831 1 NC_005362.1 contains DUF28 domain; hypothetical protein 806831 2742500 LJ0904 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964759.1 806100 D 257314 CDS NP_964760.1 42518830 2743309 806989..807966 1 NC_005362.1 contains bacterial type II secretion system protein domain; hypothetical protein 807966 2743309 LJ0905 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964760.1 806989 D 257314 CDS NP_964761.1 42518831 2742468 807932..808933 1 NC_005362.1 contains general secretion pathway protein F domain; hypothetical protein 808933 2742468 LJ0906 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964761.1 807932 D 257314 CDS NP_964762.1 42518832 2743647 808946..809242 1 NC_005362.1 hypothetical protein 809242 2743647 LJ0907 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964762.1 808946 D 257314 CDS NP_964763.1 42518833 2742435 809354..809656 1 NC_005362.1 hypothetical protein 809656 2742435 LJ0908 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964763.1 809354 D 257314 CDS NP_964764.1 42518834 2743676 809646..809864 1 NC_005362.1 hypothetical protein 809864 2743676 LJ0909 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964764.1 809646 D 257314 CDS NP_964765.1 42518835 2742086 809870..810379 1 NC_005362.1 hypothetical protein 810379 2742086 LJ0910 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964765.1 809870 D 257314 CDS NP_964766.1 42518836 2742621 810585..811586 1 NC_005362.1 contains type I restriction-modification system methyltransferase domain; hypothetical protein 811586 2742621 LJ0911 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964766.1 810585 D 257314 CDS NP_964767.1 42518837 2742313 811612..812820 1 NC_005362.1 acetate kinase 812820 2742313 LJ0912 Lactobacillus johnsonii NCC 533 acetate kinase NP_964767.1 811612 D 257314 CDS NP_964768.1 42518838 2742544 813481..815874 1 NC_005362.1 levansucrase precursor 815874 2742544 LJ0913 Lactobacillus johnsonii NCC 533 levansucrase precursor NP_964768.1 813481 D 257314 CDS NP_964769.1 42518839 2742423 816113..817003 1 NC_005362.1 hypothetical protein 817003 2742423 LJ0914 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964769.1 816113 D 257314 CDS NP_964770.1 42518840 2742330 817006..818172 1 NC_005362.1 contains aminotransferase class I and II domain; hypothetical protein 818172 2742330 LJ0915 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964770.1 817006 D 257314 CDS NP_964771.1 42518841 2742314 818233..819198 1 NC_005362.1 mannose-6-phosphate isomerase 819198 2742314 LJ0916 Lactobacillus johnsonii NCC 533 mannose-6-phosphate isomerase NP_964771.1 818233 D 257314 CDS NP_964772.1 42518842 2743409 819223..819615 1 NC_005362.1 hypothetical protein 819615 2743409 LJ0917 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964772.1 819223 D 257314 CDS NP_964773.1 42518843 2743761 819615..820325 1 NC_005362.1 two-component system response regulator 820325 2743761 LJ0918 Lactobacillus johnsonii NCC 533 two-component system response regulator NP_964773.1 819615 D 257314 CDS NP_964774.1 42518844 2743239 820329..821780 1 NC_005362.1 two-component system histidine kinase 821780 2743239 LJ0919 Lactobacillus johnsonii NCC 533 two-component system histidine kinase NP_964774.1 820329 D 257314 CDS NP_964775.1 42518845 2742194 complement(821822..822460) 1 NC_005362.1 contains alkaline phosphatase superfamily domain; hypothetical protein 822460 2742194 LJ0920 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964775.1 821822 R 257314 CDS NP_964776.1 42518846 2743707 complement(822457..823203) 1 NC_005362.1 contains alkaline phosphatase superfamily domain; hypothetical protein 823203 2743707 LJ0921 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964776.1 822457 R 257314 CDS NP_964777.1 42518847 2743087 complement(823175..824014) 1 NC_005362.1 contains alkaline phosphatase superfamily domain; hypothetical protein 824014 2743087 LJ0922 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964777.1 823175 R 257314 CDS NP_964778.1 42518848 2743077 824174..824776 1 NC_005362.1 hypothetical protein 824776 2743077 LJ0923 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964778.1 824174 D 257314 CDS NP_964779.1 42518849 2742521 824860..826203 1 NC_005362.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 826203 pgi 2742521 pgi Lactobacillus johnsonii NCC 533 glucose-6-phosphate isomerase NP_964779.1 824860 D 257314 CDS NP_964780.1 42518850 2743150 826278..827720 1 NC_005362.1 contains permease domain; hypothetical protein 827720 2743150 LJ0925 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964780.1 826278 D 257314 CDS NP_964781.1 42518851 2743279 827713..828153 1 NC_005362.1 hypothetical protein 828153 2743279 LJ0926 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964781.1 827713 D 257314 CDS NP_964782.1 42518852 2742052 828512..829531 1 NC_005362.1 contains penicillin binding protein domain; hypothetical protein 829531 2742052 LJ0927 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964782.1 828512 D 257314 CDS NP_964783.1 42518853 2743492 complement(829568..830920) 1 NC_005362.1 contains Mur ligase family, catalytic domain; hypothetical protein 830920 2743492 LJ0928 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964783.1 829568 R 257314 CDS NP_964784.1 42518854 2742371 831079..831678 1 NC_005362.1 catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 831678 2742371 LJ0929 Lactobacillus johnsonii NCC 533 thymidine kinase NP_964784.1 831079 D 257314 CDS NP_964785.1 42518855 2743266 831710..832798 1 NC_005362.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 832798 prfA 2743266 prfA Lactobacillus johnsonii NCC 533 peptide chain release factor 1 NP_964785.1 831710 D 257314 CDS NP_964786.1 42518856 2743258 832791..833633 1 NC_005362.1 contains SAM-dependent methyltransferase domain; hypothetical protein 833633 2743258 LJ0931 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964786.1 832791 D 257314 CDS NP_964787.1 42518857 2742364 833633..834625 1 NC_005362.1 contains yrdC domain; hypothetical protein 834625 2742364 LJ0932 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964787.1 833633 D 257314 CDS NP_964788.1 42518858 2742541 834739..835350 1 NC_005362.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 835350 upp 2742541 upp Lactobacillus johnsonii NCC 533 uracil phosphoribosyltransferase NP_964788.1 834739 D 257314 CDS NP_964789.1 42518859 2743010 835461..836177 1 NC_005362.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 836177 2743010 LJ0934 Lactobacillus johnsonii NCC 533 F0F1 ATP synthase subunit A NP_964789.1 835461 D 257314 CDS NP_964790.1 42518860 2743009 836196..836408 1 NC_005362.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 836408 2743009 LJ0935 Lactobacillus johnsonii NCC 533 F0F1 ATP synthase subunit C NP_964790.1 836196 D 257314 CDS NP_964791.1 42518861 2743726 836458..836958 1 NC_005362.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 836958 2743726 LJ0936 Lactobacillus johnsonii NCC 533 F0F1 ATP synthase subunit B NP_964791.1 836458 D 257314 CDS NP_964792.1 42518862 2743032 836958..837506 1 NC_005362.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 837506 2743032 LJ0937 Lactobacillus johnsonii NCC 533 F0F1 ATP synthase subunit delta NP_964792.1 836958 D 257314 CDS NP_964793.1 42518863 2743663 837521..839032 1 NC_005362.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 839032 2743663 LJ0938 Lactobacillus johnsonii NCC 533 F0F1 ATP synthase subunit alpha NP_964793.1 837521 D 257314 CDS NP_964794.1 42518864 2741916 839050..840006 1 NC_005362.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 840006 2741916 LJ0939 Lactobacillus johnsonii NCC 533 F0F1 ATP synthase subunit gamma NP_964794.1 839050 D 257314 CDS NP_964795.1 42518865 2742015 840029..841471 1 NC_005362.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 841471 2742015 LJ0940 Lactobacillus johnsonii NCC 533 F0F1 ATP synthase subunit beta NP_964795.1 840029 D 257314 CDS NP_964796.1 42518866 2743229 841483..841923 1 NC_005362.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 841923 atpC 2743229 atpC Lactobacillus johnsonii NCC 533 F0F1 ATP synthase subunit epsilon NP_964796.1 841483 D 257314 CDS NP_964797.1 42518867 2742387 841926..842207 1 NC_005362.1 hypothetical protein 842207 2742387 LJ0942 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964797.1 841926 D 257314 CDS NP_964798.1 42518868 2743121 842315..843304 1 NC_005362.1 rod shape-determining protein MreB 843304 2743121 LJ0943 Lactobacillus johnsonii NCC 533 rod shape-determining protein MreB NP_964798.1 842315 D 257314 CDS NP_964799.1 42518869 2742107 843494..843787 1 NC_005362.1 contains DUF37 domain; hypothetical protein 843787 2742107 LJ0944 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964799.1 843494 D 257314 CDS NP_964800.1 42518870 2743312 843798..844025 1 NC_005362.1 hypothetical protein 844025 2743312 LJ0945 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964800.1 843798 D 257314 CDS NP_964801.1 42518871 2743283 844044..845240 1 NC_005362.1 contains cellcycle protein domain; hypothetical protein 845240 2743283 LJ0946 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964801.1 844044 D 257314 CDS NP_964802.1 42518872 2743125 complement(845289..845768) 1 NC_005362.1 contains universal stress protein domain; hypothetical protein 845768 2743125 LJ0947 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964802.1 845289 R 257314 CDS NP_964803.1 42518873 2743307 complement(845829..846113) 1 NC_005362.1 hypothetical protein 846113 2743307 LJ0948 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964803.1 845829 R 257314 CDS NP_964804.1 42518874 2743117 complement(846398..847693) 1 NC_005362.1 ATPase family associated contains various cellular activities domain; recombination factor protein RarA 847693 2743117 LJ0949 Lactobacillus johnsonii NCC 533 recombination factor protein RarA NP_964804.1 846398 R 257314 CDS NP_964805.1 42518875 2743043 complement(847696..848160) 1 NC_005362.1 hypothetical protein 848160 2743043 LJ0950 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964805.1 847696 R 257314 CDS NP_964806.1 42518876 2743051 complement(848277..848888) 1 NC_005362.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 848888 rpsD 2743051 rpsD Lactobacillus johnsonii NCC 533 30S ribosomal protein S4 NP_964806.1 848277 R 257314 CDS NP_964807.1 42518877 2743057 849168..850892 1 NC_005362.1 contains chromosome segregation ATPase domain; acts to negatively regulates ftsZ ring formation by modulating the frequency and position of the ftsZ ring formation; septation ring formation regulator EzrA 850892 2743057 LJ0952 Lactobacillus johnsonii NCC 533 septation ring formation regulator EzrA NP_964807.1 849168 D 257314 CDS NP_964808.1 42518878 2743408 850983..852137 1 NC_005362.1 NifS/IcsS protein-like protein 852137 2743408 LJ0953 Lactobacillus johnsonii NCC 533 NifS/IcsS protein-like protein NP_964808.1 850983 D 257314 CDS NP_964809.1 42518879 2742873 852147..853364 1 NC_005362.1 Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 853364 2742873 LJ0954 Lactobacillus johnsonii NCC 533 thiamine biosynthesis protein ThiI NP_964809.1 852147 D 257314 CDS NP_964810.1 42518880 2743388 853415..854116 1 NC_005362.1 ribosomal large subunit pseudouridine synthase B 854116 2743388 LJ0955 Lactobacillus johnsonii NCC 533 ribosomal large subunit pseudouridine synthase B NP_964810.1 853415 D 257314 CDS NP_964811.1 42518881 2742503 854120..855232 1 NC_005362.1 contains glycerophosphoryl diester phosphodiesterase domain; hypothetical protein 855232 2742503 LJ0956 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964811.1 854120 D 257314 CDS NP_964812.1 42518882 2743613 855444..858071 1 NC_005362.1 cation-transporting ATPase PacL 858071 2743613 LJ0957 Lactobacillus johnsonii NCC 533 cation-transporting ATPase PacL NP_964812.1 855444 D 257314 CDS NP_964813.1 42518883 2742555 858364..861003 1 NC_005362.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 861003 valS 2742555 valS Lactobacillus johnsonii NCC 533 valyl-tRNA synthetase NP_964813.1 858364 D 257314 CDS NP_964814.1 42518884 2742877 861006..862271 1 NC_005362.1 similar to folylpolyglutamate synthase; hypothetical protein 862271 2742877 LJ0959 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964814.1 861006 D 257314 CDS NP_964815.1 42518885 2743006 862261..862941 1 NC_005362.1 contains haloacid dehalogenase-like hydrolase domain; hypothetical protein 862941 2743006 LJ0960 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964815.1 862261 D 257314 CDS NP_964816.1 42518886 2742034 862980..863591 1 NC_005362.1 DNA repair protein RadC 863591 2742034 LJ0961 Lactobacillus johnsonii NCC 533 DNA repair protein RadC NP_964816.1 862980 D 257314 CDS NP_964817.1 42518887 2742959 863729..864730 1 NC_005362.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 864730 2742959 LJ0962 Lactobacillus johnsonii NCC 533 rod shape-determining protein MreB NP_964817.1 863729 D 257314 CDS NP_964818.1 42518888 2742802 864795..865646 1 NC_005362.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 865646 2742802 LJ0963 Lactobacillus johnsonii NCC 533 rod shape-determining protein MreC NP_964818.1 864795 D 257314 CDS NP_964819.1 42518889 2742828 865646..866179 1 NC_005362.1 rod shape-determining protein MreD 866179 2742828 LJ0964 Lactobacillus johnsonii NCC 533 rod shape-determining protein MreD NP_964819.1 865646 D 257314 CDS NP_964820.1 42518890 2742944 866453..866788 1 NC_005362.1 hypothetical protein 866788 2742944 LJ0965 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964820.1 866453 D 257314 CDS NP_964821.1 42518891 2742798 866969..867400 1 NC_005362.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 867400 2742798 LJ0966 Lactobacillus johnsonii NCC 533 cell division protein MraZ NP_964821.1 866969 D 257314 CDS NP_964822.1 42518892 2742952 867384..868352 1 NC_005362.1 S-adenosyl-methyltransferase MraW 868352 mraW 2742952 mraW Lactobacillus johnsonii NCC 533 S-adenosyl-methyltransferase MraW NP_964822.1 867384 D 257314 CDS NP_964823.1 42518893 2742883 868381..868743 1 NC_005362.1 hypothetical protein 868743 2742883 LJ0968 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964823.1 868381 D 257314 CDS NP_964824.1 42518894 2742927 868743..870893 1 NC_005362.1 penicillin-binding protein 2B 870893 2742927 LJ0969 Lactobacillus johnsonii NCC 533 penicillin-binding protein 2B NP_964824.1 868743 D 257314 CDS NP_964825.1 42518895 2743411 870918..871877 1 NC_005362.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 871877 mraY 2743411 mraY Lactobacillus johnsonii NCC 533 phospho-N-acetylmuramoyl-pentapeptide- transferase NP_964825.1 870918 D 257314 CDS NP_964826.1 42518896 2743003 871885..873267 1 NC_005362.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 873267 murD 2743003 murD Lactobacillus johnsonii NCC 533 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase NP_964826.1 871885 D 257314 CDS NP_964827.1 42518897 2742912 873270..874382 1 NC_005362.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 874382 murG 2742912 murG Lactobacillus johnsonii NCC 533 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase NP_964827.1 873270 D 257314 CDS NP_964828.1 42518898 2742933 874401..875249 1 NC_005362.1 Div1B-like protein 875249 2742933 LJ0973 Lactobacillus johnsonii NCC 533 Div1B-like protein NP_964828.1 874401 D 257314 CDS NP_964829.1 42518899 2742941 875314..876684 1 NC_005362.1 cell division protein FtsA 876684 2742941 LJ0974 Lactobacillus johnsonii NCC 533 cell division protein FtsA NP_964829.1 875314 D 257314 CDS NP_964830.1 42518900 2743389 876702..878078 1 NC_005362.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 878078 2743389 LJ0975 Lactobacillus johnsonii NCC 533 cell division protein FtsZ NP_964830.1 876702 D 257314 CDS NP_964831.1 42518901 2742950 878097..878531 1 NC_005362.1 contains uncharacterized BCR domain; hypothetical protein 878531 2742950 LJ0976 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964831.1 878097 D 257314 CDS NP_964832.1 42518902 2743341 878531..878827 1 NC_005362.1 contains YGGT family domain; hypothetical protein 878827 2743341 LJ0977 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964832.1 878531 D 257314 CDS NP_964833.1 42518903 2742971 878829..879626 1 NC_005362.1 contains S4 domain; hypothetical protein 879626 2742971 LJ0978 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964833.1 878829 D 257314 CDS NP_964834.1 42518904 2742033 879631..880419 1 NC_005362.1 possible cell-division initiation protein (divIVA); hypothetical protein 880419 2742033 LJ0979 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964834.1 879631 D 257314 CDS NP_964835.1 42518905 2742127 880626..883433 1 NC_005362.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 883433 ileS 2742127 ileS Lactobacillus johnsonii NCC 533 isoleucyl-tRNA synthetase NP_964835.1 880626 D 257314 CDS NP_964836.1 42518906 2742116 883433..883642 1 NC_005362.1 cold shock protein 883642 2742116 LJ0980b Lactobacillus johnsonii NCC 533 cold shock protein NP_964836.1 883433 D 257314 CDS NP_964837.1 42518907 2743031 883656..884219 1 NC_005362.1 ADP-ribose pyrophosphatase 884219 2743031 LJ0981 Lactobacillus johnsonii NCC 533 ADP-ribose pyrophosphatase NP_964837.1 883656 D 257314 CDS NP_964838.1 42518908 2742114 884212..884502 1 NC_005362.1 hypothetical protein 884502 2742114 LJ0982 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964838.1 884212 D 257314 CDS NP_964839.1 42518909 2742845 884518..885219 1 NC_005362.1 nucleoside phosphorylase 885219 2742845 LJ0983 Lactobacillus johnsonii NCC 533 nucleoside phosphorylase NP_964839.1 884518 D 257314 CDS NP_964840.1 42518910 2742501 885321..886475 1 NC_005362.1 cysteine desulfurase NifS 886475 2742501 LJ0984 Lactobacillus johnsonii NCC 533 cysteine desulfurase NifS NP_964840.1 885321 D 257314 CDS NP_964841.1 42518911 2742092 886579..886914 1 NC_005362.1 hypothetical protein 886914 2742092 LJ0985 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964841.1 886579 D 257314 CDS NP_964842.1 42518912 2742514 886932..888059 1 NC_005362.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 888059 mnmA 2742514 mnmA Lactobacillus johnsonii NCC 533 tRNA-specific 2-thiouridylase MnmA NP_964842.1 886932 D 257314 CDS NP_964843.1 42518913 2743294 888163..888822 1 NC_005362.1 contains phosphoglycerate mutase family domain; hypothetical protein 888822 2743294 LJ0987 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964843.1 888163 D 257314 CDS NP_964844.1 42518914 2743669 888824..889468 1 NC_005362.1 contains TPR-repeat domain; hypothetical protein 889468 2743669 LJ0988 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964844.1 888824 D 257314 CDS NP_964845.1 42518915 2742862 889455..891830 1 NC_005362.1 contains ATP-dependent exoDNAse alpha chain domain; hypothetical protein 891830 2742862 LJ0989 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964845.1 889455 D 257314 CDS NP_964846.1 42518916 2742608 complement(891869..892804) 1 NC_005362.1 contains diacylglycerol kinase catalytic domain; hypothetical protein 892804 2742608 LJ0990 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964846.1 891869 R 257314 CDS NP_964847.1 42518917 2742624 complement(892854..894533) 1 NC_005362.1 contains UPF0036 domain; hypothetical protein 894533 2742624 LJ0991 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964847.1 892854 R 257314 CDS NP_964848.1 42518918 2743455 complement(894539..894766) 1 NC_005362.1 hypothetical protein 894766 2743455 LJ0992 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964848.1 894539 R 257314 CDS NP_964849.1 42518919 2743557 complement(894952..895506) 1 NC_005362.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 895506 def 2743557 def Lactobacillus johnsonii NCC 533 peptide deformylase NP_964849.1 894952 R 257314 CDS NP_964850.1 42518920 2743558 complement(895519..895743) 1 NC_005362.1 hypothetical protein 895743 2743558 LJ0994 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964850.1 895519 R 257314 CDS NP_964851.1 42518921 2743445 895777..897609 1 NC_005362.1 GTP-binding protein typA/bipA-like protein 897609 2743445 LJ0995 Lactobacillus johnsonii NCC 533 GTP-binding protein typA/bipA-like protein NP_964851.1 895777 D 257314 CDS NP_964852.1 42518922 2743609 897723..898907 1 NC_005362.1 contains cellcycle protein domain; hypothetical protein 898907 2743609 LJ0996 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964852.1 897723 D 257314 CDS NP_964853.1 42518923 2742037 898910..899239 1 NC_005362.1 hypothetical protein 899239 2742037 LJ0997 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964853.1 898910 D 257314 CDS NP_964854.1 42518924 2743482 899236..899784 1 NC_005362.1 contains N6-adenine-specific methylase domain; hypothetical protein 899784 2743482 LJ0998 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964854.1 899236 D 257314 CDS NP_964855.1 42518925 2743502 899786..900286 1 NC_005362.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 900286 coaD 2743502 coaD Lactobacillus johnsonii NCC 533 phosphopantetheine adenylyltransferase NP_964855.1 899786 D 257314 CDS NP_964856.1 42518926 2743675 900273..901283 1 NC_005362.1 contains PDZ domain; hypothetical protein 901283 2743675 LJ1000 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964856.1 900273 D 257314 CDS NP_964857.1 42518927 2743426 901340..902023 1 NC_005362.1 contains transcriptional regulator helix-turn-helix domain; hypothetical protein 902023 2743426 LJ1001 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964857.1 901340 D 257314 CDS NP_964858.1 42518928 2743473 901980..902927 1 NC_005362.1 hypothetical protein 902927 2743473 LJ1002 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964858.1 901980 D 257314 CDS NP_964859.1 42518929 2743474 902893..904263 1 NC_005362.1 contains metallo-beta-lactamase domain; hypothetical protein 904263 2743474 LJ1003 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964859.1 902893 D 257314 CDS NP_964860.1 42518930 2742295 904260..905249 1 NC_005362.1 hypothetical protein 905249 2742295 LJ1004 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964860.1 904260 D 257314 CDS NP_964861.1 42518931 2743477 complement(905318..905575) 1 NC_005362.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 905575 rpsT 2743477 rpsT Lactobacillus johnsonii NCC 533 30S ribosomal protein S20 NP_964861.1 905318 R 257314 CDS NP_964862.1 42518932 2742272 905770..906039 1 NC_005362.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 906039 rpsO 2742272 rpsO Lactobacillus johnsonii NCC 533 30S ribosomal protein S15 NP_964862.1 905770 D 257314 CDS NP_964863.1 42518933 2742254 906200..907975 1 NC_005362.1 contains metallo-beta-lactamase superfamily and uncharacterized protein family UPF0036 domains; hypothetical protein 907975 2742254 LJ1007 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964863.1 906200 D 257314 CDS NP_964864.1 42518934 2743075 907975..908832 1 NC_005362.1 hypothetical protein 908832 2743075 LJ1008 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964864.1 907975 D 257314 CDS NP_964865.1 42518935 2742321 909010..910200 1 NC_005362.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 910200 tuf 2742321 tuf Lactobacillus johnsonii NCC 533 elongation factor Tu NP_964865.1 909010 D 257314 CDS NP_964866.1 42518936 2742271 910359..911708 1 NC_005362.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 911708 tig 2742271 tig Lactobacillus johnsonii NCC 533 trigger factor NP_964866.1 910359 D 257314 CDS NP_964867.1 42518937 2742416 911853..913118 1 NC_005362.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 913118 clpX 2742416 clpX Lactobacillus johnsonii NCC 533 ATP-dependent protease ATP-binding subunit ClpX NP_964867.1 911853 D 257314 CDS NP_964868.1 42518938 2741942 913118..913702 1 NC_005362.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 913702 engB 2741942 engB Lactobacillus johnsonii NCC 533 ribosome biogenesis GTP-binding protein YsxC NP_964868.1 913118 D 257314 CDS NP_964869.1 42518939 2742685 913915..914391 1 NC_005362.1 contains low molecular weight phosphotyrosine protein phosphatase domain; hypothetical protein 914391 2742685 LJ1013 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964869.1 913915 D 257314 CDS NP_964870.1 42518940 2743514 914391..914906 1 NC_005362.1 hypothetical protein 914906 2743514 LJ1014 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964870.1 914391 D 257314 CDS NP_964871.1 42518941 2742233 915216..915866 1 NC_005362.1 contains 2-hydroxychromene-2-carboxylate isomerase family domain; hypothetical protein 915866 2742233 LJ1015 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964871.1 915216 D 257314 CDS NP_964872.1 42518942 2742247 916006..916539 1 NC_005362.1 hypothetical protein 916539 2742247 LJ1016 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964872.1 916006 D 257314 CDS NP_964873.1 42518943 2742989 916636..917904 1 NC_005362.1 hypothetical protein 917904 2742989 LJ1017 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964873.1 916636 D 257314 CDS NP_964874.1 42518944 2742434 917972..918637 1 NC_005362.1 contains protein-disulfide isomerase domain; hypothetical protein 918637 2742434 LJ1018 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964874.1 917972 D 257314 CDS NP_964875.1 42518945 2742068 918758..919609 1 NC_005362.1 hypothetical protein 919609 2742068 LJ1019 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964875.1 918758 D 257314 CDS NP_964876.1 42518946 2743102 919815..920297 1 NC_005362.1 hypothetical protein 920297 2743102 LJ1020 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964876.1 919815 D 257314 CDS NP_964877.1 42518947 2742702 920537..921541 1 NC_005362.1 similar to transcriptional regulator lytR; hypothetical protein 921541 2742702 LJ1021 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964877.1 920537 D 257314 CDS NP_964878.1 42518948 2743178 921548..922411 1 NC_005362.1 hypothetical protein 922411 2743178 LJ1022 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964878.1 921548 D 257314 CDS NP_964879.1 42518949 2743535 922422..923183 1 NC_005362.1 putative tyrosine-protein kinase 923183 2743535 LJ1023 Lactobacillus johnsonii NCC 533 putative tyrosine-protein kinase NP_964879.1 922422 D 257314 CDS NP_964880.1 42518950 2743376 923190..923960 1 NC_005362.1 hypothetical protein 923960 2743376 LJ1024 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964880.1 923190 D 257314 CDS NP_964881.1 42518951 2743182 923988..924647 1 NC_005362.1 undecaprenyl-phosphate galactosephosphotransferase 924647 2743182 LJ1025 Lactobacillus johnsonii NCC 533 undecaprenyl-phosphate galactosephosphotransferase NP_964881.1 923988 D 257314 CDS NP_964882.1 42518952 2743124 924658..925434 1 NC_005362.1 hypothetical protein 925434 2743124 LJ1026 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964882.1 924658 D 257314 CDS NP_964883.1 42518953 2742166 925461..926561 1 NC_005362.1 contains glycosyl transferases group 1 domain; hypothetical protein 926561 2742166 LJ1027 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964883.1 925461 D 257314 CDS NP_964884.1 42518954 2742670 926558..927679 1 NC_005362.1 contains glycosyl transferases group 1 domain; hypothetical protein 927679 2742670 LJ1028 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964884.1 926558 D 257314 CDS NP_964885.1 42518955 2743253 927686..928780 1 NC_005362.1 contains glycosyl transferases group 1 domain; hypothetical protein 928780 2743253 LJ1029 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964885.1 927686 D 257314 CDS NP_964886.1 42518956 2742966 928798..929721 1 NC_005362.1 contains glycosyl transferases group 2 domain; hypothetical protein 929721 2742966 LJ1030 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964886.1 928798 D 257314 CDS NP_964887.1 42518957 2742221 929787..931022 1 NC_005362.1 hypothetical protein 931022 2742221 LJ1031 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964887.1 929787 D 257314 CDS NP_964888.1 42518958 2743577 931047..932165 1 NC_005362.1 UDP-galactopyranose mutase 932165 2743577 LJ1032 Lactobacillus johnsonii NCC 533 UDP-galactopyranose mutase NP_964888.1 931047 D 257314 CDS NP_964889.1 42518959 2743067 932155..933057 1 NC_005362.1 hypothetical protein 933057 2743067 LJ1033 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964889.1 932155 D 257314 CDS NP_964890.1 42518960 2743081 933059..934486 1 NC_005362.1 contains polysaccharide biosynthesis protein domain; hypothetical protein 934486 2743081 LJ1034 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964890.1 933059 D 257314 CDS NP_964891.1 42518961 2743175 934533..935504 1 NC_005362.1 hypothetical protein 935504 2743175 LJ1035 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964891.1 934533 D 257314 CDS NP_964892.1 42518962 2743370 935671..935928 1 NC_005362.1 hypothetical protein 935928 2743370 LJ1036 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964892.1 935671 D 257314 CDS NP_964893.1 42518963 2741948 935886..936125 1 NC_005362.1 hypothetical protein 936125 2741948 LJ1037 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964893.1 935886 D 257314 CDS NP_964894.1 42518964 2743621 936107..936499 1 NC_005362.1 hypothetical protein 936499 2743621 LJ1038 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964894.1 936107 D 257314 CDS NP_964895.1 42518965 2741966 complement(936757..937131) 1 NC_005362.1 hypothetical protein 937131 2741966 LJ1039 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964895.1 936757 R 257314 CDS NP_964896.1 42518966 2741917 complement(937890..938375) 1 NC_005362.1 putative transposase 938375 2741917 LJ1040 Lactobacillus johnsonii NCC 533 putative transposase NP_964896.1 937890 R 257314 CDS NP_964897.1 42518967 2743035 complement(938753..939097) 1 NC_005362.1 putative transposase 939097 2743035 LJ1041 Lactobacillus johnsonii NCC 533 putative transposase NP_964897.1 938753 R 257314 CDS NP_964898.1 42518968 2743303 939602..940363 1 NC_005362.1 hypothetical protein 940363 2743303 LJ1042 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964898.1 939602 D 257314 CDS NP_964899.1 42518969 2743618 941004..941675 1 NC_005362.1 hypothetical protein 941675 2743618 LJ1043 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964899.1 941004 D 257314 CDS NP_964900.1 42518970 2743490 942219..943394 1 NC_005362.1 hypothetical protein 943394 2743490 LJ1045 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964900.1 942219 D 257314 CDS NP_964901.1 42518971 2743583 943391..943942 1 NC_005362.1 hypothetical protein 943942 2743583 LJ1046 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964901.1 943391 D 257314 CDS NP_964902.1 42518972 2743624 944377..946899 1 NC_005362.1 hypothetical protein 946899 2743624 LJ1047 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964902.1 944377 D 257314 CDS NP_964903.1 42518973 2743470 946936..948108 1 NC_005362.1 contains bacterial regulatory proteins, merR family domain; hypothetical protein 948108 2743470 LJ1048 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964903.1 946936 D 257314 CDS NP_964904.1 42518974 2743156 948239..949276 1 NC_005362.1 dTDP-D-glucose 4,6-dehydratase 949276 2743156 LJ1049 Lactobacillus johnsonii NCC 533 dTDP-D-glucose 4,6-dehydratase NP_964904.1 948239 D 257314 CDS NP_964905.1 42518975 2742686 949283..950167 1 NC_005362.1 glucose-1-phosphate thymidylyltransferase 950167 2742686 LJ1050 Lactobacillus johnsonii NCC 533 glucose-1-phosphate thymidylyltransferase NP_964905.1 949283 D 257314 CDS NP_964906.1 42518976 2743308 950198..950806 1 NC_005362.1 dTDP-4-dehydrorhamnose 3,5-epimerase 950806 2743308 LJ1051 Lactobacillus johnsonii NCC 533 dTDP-4-dehydrorhamnose 3,5-epimerase NP_964906.1 950198 D 257314 CDS NP_964907.1 42518977 2741904 950823..951809 1 NC_005362.1 dTDP-4-dehydrorhamnose reductase 951809 2741904 LJ1052 Lactobacillus johnsonii NCC 533 dTDP-4-dehydrorhamnose reductase NP_964907.1 950823 D 257314 CDS NP_964908.1 42518978 2742743 952342..953091 1 NC_005362.1 hypothetical protein 953091 2742743 LJ1053 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964908.1 952342 D 257314 CDS NP_964909.1 42518979 2742419 953112..954290 1 NC_005362.1 contains transcriptional regulator helix-turn-helix domain; hypothetical protein 954290 2742419 LJ1054 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964909.1 953112 D 257314 CDS NP_964910.1 42518980 2742154 954498..956234 1 NC_005362.1 contains SMC domain N terminal domain; hypothetical protein 956234 2742154 LJ1055 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964910.1 954498 D 257314 CDS NP_964911.1 42518981 2742394 956224..957819 1 NC_005362.1 contains UvrD/REP helicase domain; hypothetical protein 957819 2742394 LJ1056 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964911.1 956224 D 257314 CDS NP_964912.1 42518982 2743231 958447..959364 1 NC_005362.1 protease HtpX-like protein 959364 2743231 LJ1057 Lactobacillus johnsonii NCC 533 protease HtpX-like protein NP_964912.1 958447 D 257314 CDS NP_964913.1 42518983 2743250 960072..960848 1 NC_005362.1 hypothetical protein 960848 2743250 LJ1058 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964913.1 960072 D 257314 CDS NP_964914.1 42518984 2743740 complement(960914..961759) 1 NC_005362.1 hypothetical protein 961759 2743740 LJ1059 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964914.1 960914 R 257314 CDS NP_964915.1 42518985 2743045 961911..962351 1 NC_005362.1 contains NUDIX domain; hypothetical protein 962351 2743045 LJ1060 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964915.1 961911 D 257314 CDS NP_964916.1 42518986 2742996 complement(962380..963039) 1 NC_005362.1 hypothetical protein 963039 2742996 LJ1061 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964916.1 962380 R 257314 CDS NP_964917.1 42518987 2741998 963244..963645 1 NC_005362.1 hypothetical protein 963645 2741998 LJ1062 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964917.1 963244 D 257314 CDS NP_964918.1 42518988 2742440 963734..964114 1 NC_005362.1 hypothetical protein 964114 2742440 LJ1063 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964918.1 963734 D 257314 CDS NP_964919.1 42518989 2743491 964337..965188 1 NC_005362.1 hypothetical protein 965188 2743491 LJ1064 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964919.1 964337 D 257314 CDS NP_964920.1 42518990 2743715 complement(965459..966811) 1 NC_005362.1 contains amino acid permease domain; hypothetical protein 966811 2743715 LJ1065 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964920.1 965459 R 257314 CDS NP_964921.1 42518991 2743571 967079..967720 1 NC_005362.1 contains predicted nucleoside-diphosphate-sugar epimerase domain; hypothetical protein 967720 2743571 LJ1066 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964921.1 967079 D 257314 CDS NP_964922.1 42518992 2742674 complement(967749..968546) 1 NC_005362.1 contains phage integrase, N-terminal SAM-like domain; hypothetical protein 968546 2742674 LJ1067 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964922.1 967749 R 257314 CDS NP_964923.1 42518993 2742441 complement(968653..969264) 1 NC_005362.1 alkaline phosphatase like protein 969264 2742441 LJ1068 Lactobacillus johnsonii NCC 533 alkaline phosphatase like protein NP_964923.1 968653 R 257314 CDS NP_964924.1 42518994 2742721 complement(969273..970199) 1 NC_005362.1 contains inosine-uridine preferring nucleoside hydrolase domain; hypothetical protein 970199 2742721 LJ1069 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964924.1 969273 R 257314 CDS NP_964925.1 42518995 2742401 970341..972143 1 NC_005362.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 972143 uvrC 2742401 uvrC Lactobacillus johnsonii NCC 533 excinuclease ABC subunit C NP_964925.1 970341 D 257314 CDS NP_964926.1 42518996 2742713 972251..973537 1 NC_005362.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 973537 obgE 2742713 obgE Lactobacillus johnsonii NCC 533 GTPase ObgE NP_964926.1 972251 D 257314 CDS NP_964927.1 42518997 2742699 973567..975492 1 NC_005362.1 contains DUF33 family domain; hypothetical protein 975492 2742699 LJ1072 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964927.1 973567 D 257314 CDS NP_964928.1 42518998 2742740 975506..976435 1 NC_005362.1 hypothetical protein 976435 2742740 LJ1073 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964928.1 975506 D 257314 CDS NP_964929.1 42518999 2742199 976440..977234 1 NC_005362.1 contains short chain dehydrogenase domain; hypothetical protein 977234 2742199 LJ1074 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964929.1 976440 D 257314 CDS NP_964930.1 42519000 2742645 977241..977570 1 NC_005362.1 hypothetical protein 977570 2742645 LJ1075 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964930.1 977241 D 257314 CDS NP_964931.1 42519001 2742347 977687..977878 1 NC_005362.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 977878 rpmF 2742347 rpmF Lactobacillus johnsonii NCC 533 50S ribosomal protein L32 NP_964931.1 977687 D 257314 CDS NP_964932.1 42519002 2742707 977938..979503 1 NC_005362.1 contains 5'-nucleotidase, catalytic and C-terminal domains; hypothetical protein 979503 2742707 LJ1076 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964932.1 977938 D 257314 CDS NP_964933.1 42519003 2741881 979865..982981 1 NC_005362.1 DNA polymerase III alpha subunit 982981 2741881 LJ1077 Lactobacillus johnsonii NCC 533 DNA polymerase III alpha subunit NP_964933.1 979865 D 257314 CDS NP_964934.1 42519004 2742635 982911..983123 1 NC_005362.1 hypothetical protein 983123 2742635 LJ1078 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964934.1 982911 D 257314 CDS NP_964935.1 42519005 2742374 983155..984114 1 NC_005362.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 984114 2742374 LJ1079 Lactobacillus johnsonii NCC 533 6-phosphofructokinase NP_964935.1 983155 D 257314 CDS NP_964936.1 42519006 2742197 984149..985918 1 NC_005362.1 pyruvate kinase 985918 2742197 LJ1080 Lactobacillus johnsonii NCC 533 pyruvate kinase NP_964936.1 984149 D 257314 CDS NP_964937.1 42519007 2742284 986031..986924 1 NC_005362.1 hypothetical protein 986924 2742284 LJ1081 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964937.1 986031 D 257314 CDS NP_964938.1 42519008 2741951 986914..987804 1 NC_005362.1 integrase/recombinase XerD 987804 2741951 LJ1082 Lactobacillus johnsonii NCC 533 integrase/recombinase XerD NP_964938.1 986914 D 257314 CDS NP_964939.1 42519009 2741968 987810..988172 1 NC_005362.1 hypothetical protein 988172 2741968 LJ1083 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964939.1 987810 D 257314 CDS NP_964940.1 42519010 2743328 988165..988908 1 NC_005362.1 contains uncharacterized ACR, COG1354 domain; hypothetical protein 988908 2743328 LJ1084 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964940.1 988165 D 257314 CDS NP_964941.1 42519011 2743419 988898..989488 1 NC_005362.1 contains uncharacterized ACR domain; hypothetical protein 989488 2743419 LJ1085 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964941.1 988898 D 257314 CDS NP_964942.1 42519012 2743457 989490..990209 1 NC_005362.1 ribosomal large subunit pseudouridine synthase B 990209 2743457 LJ1086 Lactobacillus johnsonii NCC 533 ribosomal large subunit pseudouridine synthase B NP_964942.1 989490 D 257314 CDS NP_964943.1 42519013 2743586 990270..991037 1 NC_005362.1 contains LysM domain; hypothetical protein 991037 2743586 LJ1087 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964943.1 990270 D 257314 CDS NP_964944.1 42519014 2743723 991302..991895 1 NC_005362.1 hypothetical protein 991895 2743723 LJ1088 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964944.1 991302 D 257314 CDS NP_964945.1 42519015 2743459 991976..992668 1 NC_005362.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 992668 cmk 2743459 cmk Lactobacillus johnsonii NCC 533 cytidylate kinase NP_964945.1 991976 D 257314 CDS NP_964946.1 42519016 2743468 992731..993933 1 NC_005362.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 993933 rpsA 2743468 rpsA Lactobacillus johnsonii NCC 533 30S ribosomal protein S1 NP_964946.1 992731 D 257314 CDS NP_964947.1 42519017 2743587 994008..995315 1 NC_005362.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 995315 engA 2743587 engA Lactobacillus johnsonii NCC 533 GTP-binding protein EngA NP_964947.1 994008 D 257314 CDS NP_964948.1 42519018 2743471 995481..995756 1 NC_005362.1 DNA-binding protein HU 995756 2743471 LJ1092 Lactobacillus johnsonii NCC 533 DNA-binding protein HU NP_964948.1 995481 D 257314 CDS NP_964949.1 42519019 2743691 995815..997119 1 NC_005362.1 contains TPR Domain; hypothetical protein 997119 2743691 LJ1093 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964949.1 995815 D 257314 CDS NP_964950.1 42519020 2743622 997285..999105 1 NC_005362.1 hypothetical protein 999105 2743622 LJ1094 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964950.1 997285 D 257314 CDS NP_964951.1 42519021 2742461 999125..1000192 1 NC_005362.1 hypothetical protein 1000192 2742461 LJ1095 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964951.1 999125 D 257314 CDS NP_964952.1 42519022 2743580 1000180..1002423 1 NC_005362.1 hypothetical protein 1002423 2743580 LJ1096 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964952.1 1000180 D 257314 CDS NP_964953.1 42519023 2743428 1002714..1003616 1 NC_005362.1 hypothetical protein 1003616 2743428 LJ1097 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964953.1 1002714 D 257314 CDS NP_964954.1 42519024 2742438 1003799..1004545 1 NC_005362.1 contains ion transport protein domain; hypothetical protein 1004545 2742438 LJ1098 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964954.1 1003799 D 257314 CDS NP_964955.1 42519025 2742797 complement(1004626..1005516) 1 NC_005362.1 contains DUF161 family domain; hypothetical protein 1005516 2742797 LJ1099 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964955.1 1004626 R 257314 CDS NP_964956.1 42519026 2742772 1005574..1006770 1 NC_005362.1 catalyzes the addition and repair of the 3'-terminal CCA sequence in tRNA; these proteins belong to the CCA-adding enzyme subfamily 2 which does not have phosphohydrolase activity; tRNA CCA-pyrophosphorylase 1006770 2742772 LJ1100 Lactobacillus johnsonii NCC 533 tRNA CCA-pyrophosphorylase NP_964956.1 1005574 D 257314 CDS NP_964957.1 42519027 2742482 complement(1006819..1007484) 1 NC_005362.1 hemolysin-like protein 1007484 2742482 LJ1101 Lactobacillus johnsonii NCC 533 hemolysin-like protein NP_964957.1 1006819 R 257314 CDS NP_964958.1 42519028 2743437 1007629..1008486 1 NC_005362.1 contains DUF194 family domain; hypothetical protein 1008486 2743437 LJ1102 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964958.1 1007629 D 257314 CDS NP_964959.1 42519029 2742391 1008486..1008713 1 NC_005362.1 hypothetical protein 1008713 2742391 LJ1103 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964959.1 1008486 D 257314 CDS NP_964960.1 42519030 2743596 1008721..1010172 1 NC_005362.1 hypothetical protein 1010172 2743596 LJ1104 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964960.1 1008721 D 257314 CDS NP_964961.1 42519031 2742495 1010175..1011014 1 NC_005362.1 contains GTPase domain; hypothetical protein 1011014 2742495 LJ1105 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964961.1 1010175 D 257314 CDS NP_964962.1 42519032 2742508 1011011..1011763 1 NC_005362.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 1011763 rnhB 2742508 rnhB Lactobacillus johnsonii NCC 533 ribonuclease HII NP_964962.1 1011011 D 257314 CDS NP_964963.1 42519033 2741847 1011816..1012661 1 NC_005362.1 SMF protein 1012661 2741847 LJ1107 Lactobacillus johnsonii NCC 533 SMF protein NP_964963.1 1011816 D 257314 CDS NP_964964.1 42519034 2742866 1012727..1014808 1 NC_005362.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 1014808 2742866 LJ1108 Lactobacillus johnsonii NCC 533 DNA topoisomerase I NP_964964.1 1012727 D 257314 CDS NP_964965.1 42519035 2743499 1014906..1016222 1 NC_005362.1 TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine; tRNA (uracil-5-)-methyltransferase Gid 1016222 2743499 LJ1109 Lactobacillus johnsonii NCC 533 tRNA (uracil-5-)-methyltransferase Gid NP_964965.1 1014906 D 257314 CDS NP_964966.1 42519036 2742766 1016225..1017148 1 NC_005362.1 integrase/recombinase CodV 1017148 2742766 LJ1110 Lactobacillus johnsonii NCC 533 integrase/recombinase CodV NP_964966.1 1016225 D 257314 CDS NP_964967.1 42519037 2742857 1017153..1017677 1 NC_005362.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 1017677 2742857 LJ1111 Lactobacillus johnsonii NCC 533 ATP-dependent protease peptidase subunit NP_964967.1 1017153 D 257314 CDS NP_964968.1 42519038 2742381 1017688..1019082 1 NC_005362.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 1019082 hslU 2742381 hslU Lactobacillus johnsonii NCC 533 ATP-dependent protease ATP-binding subunit HslU NP_964968.1 1017688 D 257314 CDS NP_964969.1 42519039 2742853 1019110..1019997 1 NC_005362.1 hypothetical protein 1019997 2742853 LJ1113 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964969.1 1019110 D 257314 CDS NP_964970.1 42519040 2742848 1020019..1020660 1 NC_005362.1 hypothetical protein 1020660 2742848 LJ1114 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964970.1 1020019 D 257314 CDS NP_964971.1 42519041 2742850 1020812..1021375 1 NC_005362.1 contains predicted membrane-bound metal-dependent hydrolase domain; hypothetical protein 1021375 2742850 LJ1115 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964971.1 1020812 D 257314 CDS NP_964972.1 42519042 2743454 1021642..1022103 1 NC_005362.1 hypothetical protein 1022103 2743454 LJ1116 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964972.1 1021642 D 257314 CDS NP_964973.1 42519043 2742846 1022300..1023331 1 NC_005362.1 hypothetical protein 1023331 2742846 LJ1117 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964973.1 1022300 D 257314 CDS NP_964974.1 42519044 2743616 complement(1023378..1024247) 1 NC_005362.1 contains transcriptional regulator helix-turn-helix domain; hypothetical protein 1024247 2743616 LJ1118 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964974.1 1023378 R 257314 CDS NP_964975.1 42519045 2742600 1024371..1024721 1 NC_005362.1 hypothetical protein 1024721 2742600 LJ1119 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964975.1 1024371 D 257314 CDS NP_964976.1 42519046 2742677 1024927..1025967 1 NC_005362.1 contains zinc-binding dehydrogenase domain; hypothetical protein 1025967 2742677 LJ1120 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964976.1 1024927 D 257314 CDS NP_964977.1 42519047 2742851 1026360..1027211 1 NC_005362.1 hypothetical protein 1027211 2742851 LJ1121 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964977.1 1026360 D 257314 CDS NP_964978.1 42519048 2742105 1027888..1029393 1 NC_005362.1 ABC transporter ATPase component 1029393 2742105 LJ1122 Lactobacillus johnsonii NCC 533 ABC transporter ATPase component NP_964978.1 1027888 D 257314 CDS NP_964979.1 42519049 2742064 complement(1029474..1029932) 1 NC_005362.1 hypothetical protein 1029932 2742064 LJ1123 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964979.1 1029474 R 257314 CDS NP_964980.1 42519050 2742056 1030121..1031800 1 NC_005362.1 catalyzes the formation of 2-acetolactate from pyruvate in stationary phase; acetolactate synthase 1031800 2742056 LJ1124 Lactobacillus johnsonii NCC 533 acetolactate synthase NP_964980.1 1030121 D 257314 CDS NP_964981.1 42519051 2742054 1031800..1032534 1 NC_005362.1 alpha-acetolactate decarboxylase 1032534 2742054 LJ1125 Lactobacillus johnsonii NCC 533 alpha-acetolactate decarboxylase NP_964981.1 1031800 D 257314 CDS NP_964982.1 42519052 2742097 complement(1032580..1032993) 1 NC_005362.1 hypothetical protein 1032993 2742097 LJ1126 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964982.1 1032580 R 257314 CDS NP_964983.1 42519053 2742080 complement(1032995..1033429) 1 NC_005362.1 hypothetical protein 1033429 2742080 LJ1127 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964983.1 1032995 R 257314 CDS NP_964984.1 42519054 2742071 1033906..1048110 1 NC_005362.1 contains gram positive anchor domain; hypothetical protein 1048110 2742071 LJ1128 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964984.1 1033906 D 257314 CDS NP_964985.1 42519055 2742076 complement(1048219..1048905) 1 NC_005362.1 hypothetical protein 1048905 2742076 LJ1129 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964985.1 1048219 R 257314 CDS NP_964986.1 42519056 2743109 1049630..1050229 1 NC_005362.1 contains haloacid dehalogenase-like domain; hypothetical protein 1050229 2743109 LJ1130 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964986.1 1049630 D 257314 CDS NP_964987.1 42519057 2742084 1050252..1050875 1 NC_005362.1 contains MutT-like domain; hypothetical protein 1050875 2742084 LJ1131 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964987.1 1050252 D 257314 CDS NP_964988.1 42519058 2742108 1051015..1051710 1 NC_005362.1 two-component system response regulator 1051710 2742108 LJ1132 Lactobacillus johnsonii NCC 533 two-component system response regulator NP_964988.1 1051015 D 257314 CDS NP_964989.1 42519059 2741860 1051703..1053055 1 NC_005362.1 two-component system histidine kinase 1053055 2741860 LJ1133 Lactobacillus johnsonii NCC 533 two-component system histidine kinase NP_964989.1 1051703 D 257314 CDS NP_964990.1 42519060 2741851 1053186..1053806 1 NC_005362.1 hypothetical protein 1053806 2741851 LJ1134 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964990.1 1053186 D 257314 CDS NP_964991.1 42519061 2743041 1053844..1054461 1 NC_005362.1 contains zinc-binding dehydrogenase domain; hypothetical protein 1054461 2743041 LJ1135 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964991.1 1053844 D 257314 CDS NP_964992.1 42519062 2742121 1054623..1055369 1 NC_005362.1 hypothetical protein 1055369 2742121 LJ1136 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964992.1 1054623 D 257314 CDS NP_964993.1 42519063 2743314 1055642..1057150 1 NC_005362.1 branched-chain amino acid transport system carrier protein 1057150 2743314 LJ1137 Lactobacillus johnsonii NCC 533 branched-chain amino acid transport system carrier protein NP_964993.1 1055642 D 257314 CDS NP_964994.1 42519064 2743100 1057350..1058144 1 NC_005362.1 ABC transporter ATPase component 1058144 2743100 LJ1138 Lactobacillus johnsonii NCC 533 ABC transporter ATPase component NP_964994.1 1057350 D 257314 CDS NP_964995.1 42519065 2742101 1058153..1059358 1 NC_005362.1 contains UPF0051 domain; hypothetical protein 1059358 2742101 LJ1139 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964995.1 1058153 D 257314 CDS NP_964996.1 42519066 2743072 1059339..1060577 1 NC_005362.1 selenocysteine lyase 1060577 2743072 LJ1140 Lactobacillus johnsonii NCC 533 selenocysteine lyase NP_964996.1 1059339 D 257314 CDS NP_964997.1 42519067 2742112 1060564..1061022 1 NC_005362.1 NifU-like protein 1061022 2742112 LJ1141 Lactobacillus johnsonii NCC 533 NifU-like protein NP_964997.1 1060564 D 257314 CDS NP_964998.1 42519068 2743154 1061015..1062418 1 NC_005362.1 contains UPF0051 domain; hypothetical protein 1062418 2743154 LJ1142 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964998.1 1061015 D 257314 CDS NP_964999.1 42519069 2741862 1062418..1062741 1 NC_005362.1 contains DUF59 domain; hypothetical protein 1062741 2741862 LJ1143 Lactobacillus johnsonii NCC 533 hypothetical protein NP_964999.1 1062418 D 257314 CDS NP_965000.1 42519070 2743108 1062750..1064249 1 NC_005362.1 manganese transport protein MntH2 1064249 2743108 LJ1144 Lactobacillus johnsonii NCC 533 manganese transport protein MntH2 NP_965000.1 1062750 D 257314 CDS NP_965001.1 42519071 2743104 1064318..1065058 1 NC_005362.1 contains SAM-dependent methyltransferase domain; hypothetical protein 1065058 2743104 LJ1145 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965001.1 1064318 D 257314 CDS NP_965002.1 42519072 2743158 complement(1065441..1065680) 1 NC_005362.1 hypothetical protein 1065680 2743158 LJ1146 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965002.1 1065441 R 257314 CDS NP_965003.1 42519073 2743183 1065946..1066923 1 NC_005362.1 conjugated bile salt hydrolase 1066923 2743183 LJ1147 Lactobacillus johnsonii NCC 533 conjugated bile salt hydrolase NP_965003.1 1065946 D 257314 CDS NP_965004.1 42519074 2743192 complement(1067068..1067841) 1 NC_005362.1 hypothetical protein 1067841 2743192 LJ1148 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965004.1 1067068 R 257314 CDS NP_965005.1 42519075 2743214 complement(1067865..1068167) 1 NC_005362.1 hypothetical protein 1068167 2743214 LJ1149 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965005.1 1067865 R 257314 CDS NP_965006.1 42519076 2743180 1068391..1070913 1 NC_005362.1 excinuclease ATPase subunit 1070913 2743180 LJ1150 Lactobacillus johnsonii NCC 533 excinuclease ATPase subunit NP_965006.1 1068391 D 257314 CDS NP_965007.1 42519077 2743201 1071123..1071575 1 NC_005362.1 hypothetical protein 1071575 2743201 LJ1151 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965007.1 1071123 D 257314 CDS NP_965008.1 42519078 2743218 complement(1071642..1071974) 1 NC_005362.1 contains DUF174 domain; hypothetical protein 1071974 2743218 LJ1152 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965008.1 1071642 R 257314 CDS NP_965009.1 42519079 2743292 complement(1072108..1072602) 1 NC_005362.1 thiol peroxidase 1072602 2743292 LJ1153 Lactobacillus johnsonii NCC 533 thiol peroxidase NP_965009.1 1072108 R 257314 CDS NP_965010.1 42519080 2743119 1072763..1073212 1 NC_005362.1 hypothetical protein 1073212 2743119 LJ1154 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965010.1 1072763 D 257314 CDS NP_965011.1 42519081 2743252 1073605..1076343 1 NC_005362.1 Mg(2+) transport ATPase, P-type 2 1076343 2743252 LJ1155 Lactobacillus johnsonii NCC 533 Mg(2+) transport ATPase, P-type 2 NP_965011.1 1073605 D 257314 CDS NP_965012.1 42519082 2742985 1076475..1076912 1 NC_005362.1 contains bacterial regulatory proteins, marR family domain; hypothetical protein 1076912 2742985 LJ1156 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965012.1 1076475 D 257314 CDS NP_965013.1 42519083 2742960 1076997..1078748 1 NC_005362.1 ABC transporter ATPase and permease components 1078748 2742960 LJ1157 Lactobacillus johnsonii NCC 533 ABC transporter ATPase and permease components NP_965013.1 1076997 D 257314 CDS NP_965014.1 42519084 2742616 1078872..1079693 1 NC_005362.1 reductase 1079693 2742616 LJ1158 Lactobacillus johnsonii NCC 533 reductase NP_965014.1 1078872 D 257314 CDS NP_965015.1 42519085 2742586 complement(1079774..1080037) 1 NC_005362.1 hypothetical protein 1080037 2742586 LJ1159 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965015.1 1079774 R 257314 CDS NP_965016.1 42519086 2742675 1080153..1081415 1 NC_005362.1 contains ATPase family associated with various cellular activities domain; recombination factor protein RarA 1081415 2742675 LJ1160 Lactobacillus johnsonii NCC 533 recombination factor protein RarA NP_965016.1 1080153 D 257314 CDS NP_965017.1 42519087 2742573 1081467..1082381 1 NC_005362.1 hypothetical protein 1082381 2742573 LJ1161 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965017.1 1081467 D 257314 CDS NP_965018.1 42519088 2742824 1082399..1082629 1 NC_005362.1 hypothetical protein 1082629 2742824 LJ1162 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965018.1 1082399 D 257314 CDS NP_965019.1 42519089 2742835 1082760..1083476 1 NC_005362.1 contains UPF0005 domain; hypothetical protein 1083476 2742835 LJ1163 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965019.1 1082760 D 257314 CDS NP_965020.1 42519090 2742826 1083774..1084883 1 NC_005362.1 hypothetical protein 1084883 2742826 LJ1164 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965020.1 1083774 D 257314 CDS NP_965021.1 42519091 2743360 1084880..1086133 1 NC_005362.1 hypothetical protein 1086133 2743360 LJ1165 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965021.1 1084880 D 257314 CDS NP_965022.1 42519092 2742968 1086140..1087009 1 NC_005362.1 ABC transporter ATPase component 1087009 2742968 LJ1166 Lactobacillus johnsonii NCC 533 ABC transporter ATPase component NP_965022.1 1086140 D 257314 CDS NP_965023.1 42519093 2743004 1087128..1088003 1 NC_005362.1 reductase 1088003 2743004 LJ1167 Lactobacillus johnsonii NCC 533 reductase NP_965023.1 1087128 D 257314 CDS NP_965024.1 42519094 2743241 1088139..1088753 1 NC_005362.1 galactoside O-acetyltransferase 1088753 2743241 LJ1168 Lactobacillus johnsonii NCC 533 galactoside O-acetyltransferase NP_965024.1 1088139 D 257314 CDS NP_965025.1 42519095 2743025 complement(1088856..1089512) 1 NC_005362.1 contains DUF205 domain; hypothetical protein 1089512 2743025 LJ1169 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965025.1 1088856 R 257314 CDS NP_965026.1 42519096 2743371 1089612..1091570 1 NC_005362.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 1091570 2743371 LJ1170 Lactobacillus johnsonii NCC 533 DNA topoisomerase IV subunit B NP_965026.1 1089612 D 257314 CDS NP_965027.1 42519097 2743079 1091587..1094067 1 NC_005362.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 1094067 2743079 LJ1171 Lactobacillus johnsonii NCC 533 DNA topoisomerase IV subunit A NP_965027.1 1091587 D 257314 CDS NP_965028.1 42519098 2742538 1094310..1095263 1 NC_005362.1 contains transcriptional regulator helix-turn-helix domain; hypothetical protein 1095263 2742538 LJ1172 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965028.1 1094310 D 257314 CDS NP_965029.1 42519099 2742241 1095382..1096317 1 NC_005362.1 catalyzes the hydrolysis of pyrophosphate to phosphate; putative manganese-dependent inorganic pyrophosphatase 1096317 2742241 LJ1173 Lactobacillus johnsonii NCC 533 putative manganese-dependent inorganic pyrophosphatase NP_965029.1 1095382 D 257314 CDS NP_965030.1 42519100 2743534 1096388..1098184 1 NC_005362.1 ATP-dependent DNA helicase RecQ 1098184 2743534 LJ1174 Lactobacillus johnsonii NCC 533 ATP-dependent DNA helicase RecQ NP_965030.1 1096388 D 257314 CDS NP_965031.1 42519101 2743396 1098246..1098833 1 NC_005362.1 contains cyclophilin type peptidyl-prolyl cis-trans isomerase domain; hypothetical protein 1098833 2743396 LJ1175 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965031.1 1098246 D 257314 CDS NP_965032.1 42519102 2742945 1098900..1099595 1 NC_005362.1 hypothetical protein 1099595 2742945 LJ1176 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965032.1 1098900 D 257314 CDS NP_965033.1 42519103 2743340 1100907..1101977 1 NC_005362.1 contains phage integrase domain; site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerS; site-specific tyrosine recombinase XerS 1101977 xerS 2743340 xerS Lactobacillus johnsonii NCC 533 site-specific tyrosine recombinase XerS NP_965033.1 1100907 D 257314 CDS NP_965034.1 42519104 2743383 1102048..1102929 1 NC_005362.1 contains transcriptional regulator helix-turn-helix domain; hypothetical protein 1102929 2743383 LJ1178 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965034.1 1102048 D 257314 CDS NP_965035.1 42519105 2743377 complement(1102986..1104098) 1 NC_005362.1 hypothetical protein 1104098 2743377 LJ1179 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965035.1 1102986 R 257314 CDS NP_965036.1 42519106 2742908 complement(1104183..1105070) 1 NC_005362.1 contains DUF194 domain; hypothetical protein 1105070 2742908 LJ1180 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965036.1 1104183 R 257314 CDS NP_965037.1 42519107 2743357 complement(1105186..1105608) 1 NC_005362.1 contains bacterial regulatory marR domain; hypothetical protein 1105608 2743357 LJ1181 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965037.1 1105186 R 257314 CDS NP_965038.1 42519108 2742497 1105784..1107475 1 NC_005362.1 hypothetical protein 1107475 2742497 LJ1182 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965038.1 1105784 D 257314 CDS NP_965039.1 42519109 2742956 complement(1107548..1110712) 1 NC_005362.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 1110712 carB 2742956 carB Lactobacillus johnsonii NCC 533 carbamoyl phosphate synthase large subunit NP_965039.1 1107548 R 257314 CDS NP_965040.1 42519110 2742809 complement(1110716..1111771) 1 NC_005362.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 1111771 2742809 LJ1185 Lactobacillus johnsonii NCC 533 carbamoyl phosphate synthase small subunit NP_965040.1 1110716 R 257314 CDS NP_965041.1 42519111 2742810 complement(1111775..1112689) 1 NC_005362.1 ribosomal large subunit pseudouridine synthase D 1112689 2742810 LJ1186 Lactobacillus johnsonii NCC 533 ribosomal large subunit pseudouridine synthase D NP_965041.1 1111775 R 257314 CDS NP_965042.1 42519112 2742804 complement(1112704..1113168) 1 NC_005362.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 1113168 2742804 LJ1187 Lactobacillus johnsonii NCC 533 lipoprotein signal peptidase NP_965042.1 1112704 R 257314 CDS NP_965043.1 42519113 2742818 complement(1113168..1114841) 1 NC_005362.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase 1114841 2742818 LJ1188 Lactobacillus johnsonii NCC 533 formate--tetrahydrofolate ligase NP_965043.1 1113168 R 257314 CDS NP_965044.1 42519114 2743584 complement(1114844..1115188) 1 NC_005362.1 hypothetical protein 1115188 2743584 LJ1189 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965044.1 1114844 R 257314 CDS NP_965045.1 42519115 2741872 1115321..1116244 1 NC_005362.1 contains DUF194 domain; hypothetical protein 1116244 2741872 LJ1190 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965045.1 1115321 D 257314 CDS NP_965046.1 42519116 2742570 1116331..1117458 1 NC_005362.1 hypothetical protein 1117458 2742570 LJ1191 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965046.1 1116331 D 257314 CDS NP_965047.1 42519117 2742185 complement(1117507..1118739) 1 NC_005362.1 contains predicted phosphohydrolase domain; hypothetical protein 1118739 2742185 LJ1192 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965047.1 1117507 R 257314 CDS NP_965048.1 42519118 2742208 complement(1118745..1119869) 1 NC_005362.1 contains UPF0020 domain; hypothetical protein 1119869 2742208 LJ1193 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965048.1 1118745 R 257314 CDS NP_965049.1 42519119 2742192 complement(1120335..1120772) 1 NC_005362.1 hypothetical protein 1120772 2742192 LJ1194 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965049.1 1120335 R 257314 CDS NP_965050.1 42519120 2742355 complement(1120978..1121541) 1 NC_005362.1 hypothetical protein 1121541 2742355 LJ1195 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965050.1 1120978 R 257314 CDS NP_965051.1 42519121 2742646 1121603..1122220 1 NC_005362.1 functions in homologous recombination, DNA repair, and chromosome segregation; binds preferentially to three- and four-stranded DNA intermediates; introduces specific nick sites in four-stranded DNA substrates; functions similarly to Escherichia coli RuvC; Holliday junction-specific endonuclease 1122220 recU 2742646 recU Lactobacillus johnsonii NCC 533 Holliday junction-specific endonuclease NP_965051.1 1121603 D 257314 CDS NP_965052.1 42519122 2742327 1122231..1124618 1 NC_005362.1 penicillin-binding protein 1A 1124618 2742327 LJ1197 Lactobacillus johnsonii NCC 533 penicillin-binding protein 1A NP_965052.1 1122231 D 257314 CDS NP_965053.1 42519123 2742341 complement(1124690..1125319) 1 NC_005362.1 endonuclease III 1125319 2742341 LJ1198 Lactobacillus johnsonii NCC 533 endonuclease III NP_965053.1 1124690 R 257314 CDS NP_965054.1 42519124 2742560 complement(1125329..1125973) 1 NC_005362.1 similar to DNA replication protein DnaD; hypothetical protein 1125973 2742560 LJ1199 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965054.1 1125329 R 257314 CDS NP_965055.1 42519125 2742535 complement(1126045..1127343) 1 NC_005362.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 1127343 asnC 2742535 asnC Lactobacillus johnsonii NCC 533 asparaginyl-tRNA synthetase NP_965055.1 1126045 R 257314 CDS NP_965056.1 42519126 2742282 complement(1127412..1127906) 1 NC_005362.1 hypothetical protein 1127906 2742282 LJ1201 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965056.1 1127412 R 257314 CDS NP_965057.1 42519127 2742691 complement(1127899..1130715) 1 NC_005362.1 contains exonuclease domain; hypothetical protein 1130715 2742691 LJ1202 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965057.1 1127899 R 257314 CDS NP_965058.1 42519128 2742385 complement(1130740..1134354) 1 NC_005362.1 contains UvrD/REP helicase domain; hypothetical protein 1134354 2742385 LJ1203 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965058.1 1130740 R 257314 CDS NP_965059.1 42519129 2742426 complement(1134355..1137831) 1 NC_005362.1 hypothetical protein 1137831 2742426 LJ1204 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965059.1 1134355 R 257314 CDS NP_965060.1 42519130 2743427 1137918..1138835 1 NC_005362.1 mevalonate kinase 1138835 2743427 LJ1205 Lactobacillus johnsonii NCC 533 mevalonate kinase NP_965060.1 1137918 D 257314 CDS NP_965061.1 42519131 2742583 1138835..1139800 1 NC_005362.1 mevalonate pyrophosphate decarboxylase 1139800 2742583 LJ1206 Lactobacillus johnsonii NCC 533 mevalonate pyrophosphate decarboxylase NP_965061.1 1138835 D 257314 CDS NP_965062.1 42519132 2742609 1139835..1140908 1 NC_005362.1 mevalonate kinase 1140908 2742609 LJ1207 Lactobacillus johnsonii NCC 533 mevalonate kinase NP_965062.1 1139835 D 257314 CDS NP_965063.1 42519133 2742768 1140920..1141945 1 NC_005362.1 catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate; isopentenyl pyrophosphate isomerase 1141945 2742768 LJ1208 Lactobacillus johnsonii NCC 533 isopentenyl pyrophosphate isomerase NP_965063.1 1140920 D 257314 CDS NP_965064.1 42519134 2742512 complement(1142139..1143722) 1 NC_005362.1 ABC transporter ATPase and permease components 1143722 2742512 LJ1209 Lactobacillus johnsonii NCC 533 ABC transporter ATPase and permease components NP_965064.1 1142139 R 257314 CDS NP_965065.1 42519135 2742962 complement(1143722..1145302) 1 NC_005362.1 ABC transporter ATPase and permease components 1145302 2742962 LJ1210 Lactobacillus johnsonii NCC 533 ABC transporter ATPase and permease components NP_965065.1 1143722 R 257314 CDS NP_965066.1 42519136 2742916 1145652..1146866 1 NC_005362.1 major facilitator superfamily permease 1146866 2742916 LJ1211 Lactobacillus johnsonii NCC 533 major facilitator superfamily permease NP_965066.1 1145652 D 257314 CDS NP_965067.1 42519137 2743026 1146994..1147800 1 NC_005362.1 contains aminoglycoside 3-N-acetyltransferase domain; hypothetical protein 1147800 2743026 LJ1212 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965067.1 1146994 D 257314 CDS NP_965068.1 42519138 2741961 complement(1147870..1148760) 1 NC_005362.1 hypothetical protein 1148760 2741961 LJ1213 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965068.1 1147870 R 257314 CDS NP_965069.1 42519139 2743394 complement(1148836..1149231) 1 NC_005362.1 cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase 1149231 2743394 LJ1214 Lactobacillus johnsonii NCC 533 D-ribose pyranase NP_965069.1 1148836 R 257314 CDS NP_965070.1 42519140 2743234 1149843..1150694 1 NC_005362.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 1150694 2743234 LJ1215 Lactobacillus johnsonii NCC 533 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase NP_965070.1 1149843 D 257314 CDS NP_965071.1 42519141 2743347 complement(1150835..1151284) 1 NC_005362.1 hypothetical protein 1151284 2743347 LJ1216 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965071.1 1150835 R 257314 CDS NP_965072.1 42519142 2742492 complement(1151277..1152059) 1 NC_005362.1 contains phosphorylase domain; hypothetical protein 1152059 2742492 LJ1217 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965072.1 1151277 R 257314 CDS NP_965073.1 42519143 2743700 complement(1152072..1152851) 1 NC_005362.1 contains phosphorylase domain; hypothetical protein 1152851 2743700 LJ1218 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965073.1 1152072 R 257314 CDS NP_965074.1 42519144 2742383 complement(1153008..1153472) 1 NC_005362.1 contains MutT-like domain; hypothetical protein 1153472 2742383 LJ1219 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965074.1 1153008 R 257314 CDS NP_965075.1 42519145 2742979 complement(1153473..1154294) 1 NC_005362.1 hypothetical protein 1154294 2742979 LJ1220 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965075.1 1153473 R 257314 CDS NP_965076.1 42519146 2741959 complement(1154278..1154790) 1 NC_005362.1 contains phosphoribulokinase / uridine kinase domain; hypothetical protein 1154790 2741959 LJ1221 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965076.1 1154278 R 257314 CDS NP_965077.1 42519147 2741978 complement(1154818..1155339) 1 NC_005362.1 hypothetical protein 1155339 2741978 LJ1222 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965077.1 1154818 R 257314 CDS NP_965078.1 42519148 2741960 complement(1155330..1156001) 1 NC_005362.1 hypothetical protein 1156001 2741960 LJ1223 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965078.1 1155330 R 257314 CDS NP_965079.1 42519149 2741986 complement(1156024..1156797) 1 NC_005362.1 contains predicted hydrolase or acyltransferase domain; hypothetical protein 1156797 2741986 LJ1224 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965079.1 1156024 R 257314 CDS NP_965080.1 42519150 2741995 complement(1156812..1157426) 1 NC_005362.1 contains MutT-like domain; hypothetical protein 1157426 2741995 LJ1225 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965080.1 1156812 R 257314 CDS NP_965081.1 42519151 2743541 complement(1157416..1157913) 1 NC_005362.1 contains acetyltransferase (GNAT) domain; hypothetical protein 1157913 2743541 LJ1226 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965081.1 1157416 R 257314 CDS NP_965082.1 42519152 2741997 complement(1157931..1158452) 1 NC_005362.1 contains acetyltransferase (GNAT) domain; hypothetical protein 1158452 2741997 LJ1227 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965082.1 1157931 R 257314 CDS NP_965083.1 42519153 2742006 complement(1158601..1159347) 1 NC_005362.1 contains alpha/beta hydrolase domain; hypothetical protein 1159347 2742006 LJ1228 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965083.1 1158601 R 257314 CDS NP_965084.1 42519154 2741999 complement(1159399..1160607) 1 NC_005362.1 hypothetical protein 1160607 2741999 LJ1229 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965084.1 1159399 R 257314 CDS NP_965085.1 42519155 2742031 complement(1160977..1161606) 1 NC_005362.1 hypothetical protein 1161606 2742031 LJ1230 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965085.1 1160977 R 257314 CDS NP_965086.1 42519156 2742038 complement(1161750..1162043) 1 NC_005362.1 hypothetical protein 1162043 2742038 LJ1231 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965086.1 1161750 R 257314 CDS NP_965087.1 42519157 2743172 complement(1162251..1162943) 1 NC_005362.1 hypothetical protein 1162943 2743172 LJ1232 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965087.1 1162251 R 257314 CDS NP_965088.1 42519158 2742016 complement(1162940..1163302) 1 NC_005362.1 hypothetical protein 1163302 2742016 LJ1233 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965088.1 1162940 R 257314 CDS NP_965089.1 42519159 2742018 complement(1163306..1163602) 1 NC_005362.1 hypothetical protein 1163602 2742018 LJ1234 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965089.1 1163306 R 257314 CDS NP_965090.1 42519160 2742055 complement(1163613..1164074) 1 NC_005362.1 contains HIT family hydrolase domain; hypothetical protein 1164074 2742055 LJ1235 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965090.1 1163613 R 257314 CDS NP_965091.1 42519161 2742446 complement(1164095..1164547) 1 NC_005362.1 contains acetyltransferase (GNAT) domain; hypothetical protein 1164547 2742446 LJ1236 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965091.1 1164095 R 257314 CDS NP_965092.1 42519162 2743603 1164643..1165110 1 NC_005362.1 hypothetical protein 1165110 2743603 LJ1237 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965092.1 1164643 D 257314 CDS NP_965093.1 42519163 2743444 1165163..1165621 1 NC_005362.1 hypothetical protein 1165621 2743444 LJ1238 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965093.1 1165163 D 257314 CDS NP_965094.1 42519164 2743682 1165605..1166150 1 NC_005362.1 contains acetyltransferase domain; hypothetical protein 1166150 2743682 LJ1239 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965094.1 1165605 D 257314 CDS NP_965095.1 42519165 2742860 1166334..1166609 1 NC_005362.1 DNA-damage-inducible protein J 1166609 2742860 LJ1240 Lactobacillus johnsonii NCC 533 DNA-damage-inducible protein J NP_965095.1 1166334 D 257314 CDS NP_965096.1 42519166 2743456 1166609..1166914 1 NC_005362.1 hypothetical protein 1166914 2743456 LJ1241 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965096.1 1166609 D 257314 CDS NP_965097.1 42519167 2743298 complement(1167126..1167461) 1 NC_005362.1 hypothetical protein 1167461 2743298 LJ1242 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965097.1 1167126 R 257314 CDS NP_965098.1 42519168 2743284 1167635..1169212 1 NC_005362.1 ABC transporter ATPase and permease components 1169212 2743284 LJ1243 Lactobacillus johnsonii NCC 533 ABC transporter ATPase and permease components NP_965098.1 1167635 D 257314 CDS NP_965099.1 42519169 2743190 complement(1169277..1169759) 1 NC_005362.1 contains nitroreductase domain; hypothetical protein 1169759 2743190 LJ1244 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965099.1 1169277 R 257314 CDS NP_965100.1 42519170 2743319 1169938..1171119 1 NC_005362.1 major facilitator superfamily permease 1171119 2743319 LJ1245 Lactobacillus johnsonii NCC 533 major facilitator superfamily permease NP_965100.1 1169938 D 257314 CDS NP_965101.1 42519171 2742995 complement(1171209..1172495) 1 NC_005362.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1172495 eno 2742995 eno Lactobacillus johnsonii NCC 533 phosphopyruvate hydratase NP_965101.1 1171209 R 257314 CDS NP_965102.1 42519172 2743315 complement(1172700..1174283) 1 NC_005362.1 ABC transporter ATPase and permease components 1174283 2743315 LJ1247 Lactobacillus johnsonii NCC 533 ABC transporter ATPase and permease components NP_965102.1 1172700 R 257314 CDS NP_965103.1 42519173 2742542 complement(1174286..1174747) 1 NC_005362.1 ABC transporter ATPase component 1174747 2742542 LJ1248 Lactobacillus johnsonii NCC 533 ABC transporter ATPase component NP_965103.1 1174286 R 257314 CDS NP_965104.1 42519174 2742207 complement(1174836..1175876) 1 NC_005362.1 ABC transporter ATPase and permease components 1175876 2742207 LJ1249 Lactobacillus johnsonii NCC 533 ABC transporter ATPase and permease components NP_965104.1 1174836 R 257314 CDS NP_965105.1 42519175 2742660 1176180..1177046 1 NC_005362.1 contains SPFH domain / Band 7 domain; hypothetical protein 1177046 2742660 LJ1250 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965105.1 1176180 D 257314 CDS NP_965106.1 42519176 2742358 complement(1177308..1178438) 1 NC_005362.1 glycerate kinase 1178438 2742358 LJ1251 Lactobacillus johnsonii NCC 533 glycerate kinase NP_965106.1 1177308 R 257314 CDS NP_965107.1 42519177 2741883 1178542..1179039 1 NC_005362.1 hypothetical protein 1179039 2741883 LJ1252 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965107.1 1178542 D 257314 CDS NP_965108.1 42519178 2742307 complement(1179193..1179585) 1 NC_005362.1 hypothetical protein 1179585 2742307 LJ1253 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965108.1 1179193 R 257314 CDS NP_965109.1 42519179 2742334 complement(1179659..1180582) 1 NC_005362.1 contains NADH:flavin oxidoreductase / NADH oxidase domain; hypothetical protein 1180582 2742334 LJ1254 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965109.1 1179659 R 257314 CDS NP_965110.1 42519180 2742735 complement(1180563..1180823) 1 NC_005362.1 hypothetical protein 1180823 2742735 LJ1255 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965110.1 1180563 R 257314 CDS NP_965111.1 42519181 2742752 complement(1180916..1181560) 1 NC_005362.1 contains nitroreductase domain; hypothetical protein 1181560 2742752 LJ1256 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965111.1 1180916 R 257314 CDS NP_965112.1 42519182 2742299 complement(1181672..1183204) 1 NC_005362.1 hypothetical protein 1183204 2742299 LJ1257 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965112.1 1181672 R 257314 CDS NP_965113.1 42519183 2743652 complement(1183219..1184217) 1 NC_005362.1 hypothetical protein 1184217 2743652 LJ1258 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965113.1 1183219 R 257314 CDS NP_965114.1 42519184 2742731 complement(1184144..1184446) 1 NC_005362.1 hypothetical protein 1184446 2742731 LJ1259 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965114.1 1184144 R 257314 CDS NP_965115.1 42519185 2742530 1184615..1185571 1 NC_005362.1 contains bacterial regulatory lacI domain; hypothetical protein 1185571 2742530 LJ1260 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965115.1 1184615 D 257314 CDS NP_965116.1 42519186 2742357 complement(1185633..1187825) 1 NC_005362.1 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, beta-glucoside-specific 1187825 2742357 LJ1261 Lactobacillus johnsonii NCC 533 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, beta-glucoside-specific NP_965116.1 1185633 R 257314 CDS NP_965117.1 42519187 2742158 complement(1187831..1188673) 1 NC_005362.1 contains transcriptional antiterminator bglG domain; hypothetical protein 1188673 2742158 LJ1262 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965117.1 1187831 R 257314 CDS NP_965118.1 42519188 2742163 complement(1188838..1190136) 1 NC_005362.1 hypothetical protein 1190136 2742163 LJ1263 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965118.1 1188838 R 257314 CDS NP_965119.1 42519189 2742178 complement(1190165..1191625) 1 NC_005362.1 hypothetical protein 1191625 2742178 LJ1264 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965119.1 1190165 R 257314 CDS NP_965120.1 42519190 2742729 complement(1191726..1192745) 1 NC_005362.1 contains bacterial regulatory lacI domain; hypothetical protein 1192745 2742729 LJ1265 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965120.1 1191726 R 257314 CDS NP_965121.1 42519191 2741930 1192879..1193712 1 NC_005362.1 transketolase 1193712 2741930 LJ1266 Lactobacillus johnsonii NCC 533 transketolase NP_965121.1 1192879 D 257314 CDS NP_965122.1 42519192 2742287 1193705..1194646 1 NC_005362.1 transketolase 1194646 2742287 LJ1267 Lactobacillus johnsonii NCC 533 transketolase NP_965122.1 1193705 D 257314 CDS NP_965123.1 42519193 2742525 1194657..1196108 1 NC_005362.1 glycerol kinase 1196108 2742525 LJ1268 Lactobacillus johnsonii NCC 533 glycerol kinase NP_965123.1 1194657 D 257314 CDS NP_965124.1 42519194 2742276 complement(1196160..1198103) 1 NC_005362.1 neutral endopeptidase 1198103 2742276 LJ1269 Lactobacillus johnsonii NCC 533 neutral endopeptidase NP_965124.1 1196160 R 257314 CDS NP_965125.1 42519195 2742396 complement(1198318..1198992) 1 NC_005362.1 hypothetical protein 1198992 2742396 LJ1270 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965125.1 1198318 R 257314 CDS NP_965126.1 42519196 2743637 1199047..1200171 1 NC_005362.1 contains glycosyl transferase group 1 domain; hypothetical protein 1200171 2743637 LJ1271 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965126.1 1199047 D 257314 CDS NP_965127.1 42519197 2742377 1200239..1201816 1 NC_005362.1 phosphoenolpyruvate carboxylase 1201816 2742377 LJ1272 Lactobacillus johnsonii NCC 533 phosphoenolpyruvate carboxylase NP_965127.1 1200239 D 257314 CDS NP_965128.1 42519198 2743605 1201820..1202977 1 NC_005362.1 phosphoenolpyruvate carboxylase 1202977 2743605 LJ1273 Lactobacillus johnsonii NCC 533 phosphoenolpyruvate carboxylase NP_965128.1 1201820 D 257314 CDS NP_965129.1 42519199 2743681 1203000..1203548 1 NC_005362.1 contains isochorismatase domain; hypothetical protein 1203548 2743681 LJ1274 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965129.1 1203000 D 257314 CDS NP_965130.1 42519200 2743689 complement(1203599..1204135) 1 NC_005362.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase 1204135 2743689 LJ1275 Lactobacillus johnsonii NCC 533 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase NP_965130.1 1203599 R 257314 CDS NP_965131.1 42519201 2742469 complement(1204168..1207356) 1 NC_005362.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 1207356 carB 2742469 carB Lactobacillus johnsonii NCC 533 carbamoyl phosphate synthase large subunit NP_965131.1 1204168 R 257314 CDS NP_965132.1 42519202 2743546 complement(1207349..1208437) 1 NC_005362.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 1208437 2743546 LJ1277 Lactobacillus johnsonii NCC 533 carbamoyl phosphate synthase small subunit NP_965132.1 1207349 R 257314 CDS NP_965133.1 42519203 2743536 complement(1208434..1209711) 1 NC_005362.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 1209711 pyrC 2743536 pyrC Lactobacillus johnsonii NCC 533 dihydroorotase NP_965133.1 1208434 R 257314 CDS NP_965134.1 42519204 2741913 complement(1209711..1210667) 1 NC_005362.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 1210667 pyrB 2741913 pyrB Lactobacillus johnsonii NCC 533 aspartate carbamoyltransferase catalytic subunit NP_965134.1 1209711 R 257314 CDS NP_965135.1 42519205 2742602 complement(1210815..1211381) 1 NC_005362.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase 1211381 2742602 LJ1280 Lactobacillus johnsonii NCC 533 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase NP_965135.1 1210815 R 257314 CDS NP_965136.1 42519206 2741886 complement(1211524..1212447) 1 NC_005362.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits; dihydroorotate dehydrogenase 1B 1212447 2741886 LJ1281 Lactobacillus johnsonii NCC 533 dihydroorotate dehydrogenase 1B NP_965136.1 1211524 R 257314 CDS NP_965137.1 42519207 2742202 1212697..1213404 1 NC_005362.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 1213404 2742202 LJ1282 Lactobacillus johnsonii NCC 533 orotidine 5'-phosphate decarboxylase NP_965137.1 1212697 D 257314 CDS NP_965138.1 42519208 2742606 1213406..1214044 1 NC_005362.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 1214044 pyrE 2742606 pyrE Lactobacillus johnsonii NCC 533 orotate phosphoribosyltransferase NP_965138.1 1213406 D 257314 CDS NP_965139.1 42519209 2742633 1214341..1215936 1 NC_005362.1 hypothetical protein 1215936 2742633 LJ1284 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965139.1 1214341 D 257314 CDS NP_965140.1 42519210 2742546 complement(1215986..1216798) 1 NC_005362.1 contains haloacid dehalogenase-like hydrolase domain; hypothetical protein 1216798 2742546 LJ1285 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965140.1 1215986 R 257314 CDS NP_965141.1 42519211 2742554 complement(1216795..1217835) 1 NC_005362.1 contains DUF218 domain; hypothetical protein 1217835 2742554 LJ1286 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965141.1 1216795 R 257314 CDS NP_965142.1 42519212 2742548 1217963..1218289 1 NC_005362.1 contains DUF74 domain; hypothetical protein 1218289 2742548 LJ1287 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965142.1 1217963 D 257314 CDS NP_965143.1 42519213 2742613 complement(1218320..1219711) 1 NC_005362.1 contains NOL1/NOP2/sun domain; hypothetical protein 1219711 2742613 LJ1288 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965143.1 1218320 R 257314 CDS NP_965144.1 42519214 2742141 complement(1219711..1220688) 1 NC_005362.1 hypothetical protein 1220688 2742141 LJ1289 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965144.1 1219711 R 257314 CDS NP_965145.1 42519215 2742161 complement(1220688..1221416) 1 NC_005362.1 hypothetical protein 1221416 2742161 LJ1290 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965145.1 1220688 R 257314 CDS NP_965146.1 42519216 2742195 1221506..1222075 1 NC_005362.1 signal peptidase I 1222075 2742195 LJ1291 Lactobacillus johnsonii NCC 533 signal peptidase I NP_965146.1 1221506 D 257314 CDS NP_965147.1 42519217 2742145 1222381..1222875 1 NC_005362.1 hypothetical protein 1222875 2742145 LJ1292 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965147.1 1222381 D 257314 CDS NP_965148.1 42519218 2741953 1222872..1223120 1 NC_005362.1 hypothetical protein 1223120 2741953 LJ1293 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965148.1 1222872 D 257314 CDS NP_965149.1 42519219 2742179 complement(1223240..1223611) 1 NC_005362.1 hypothetical protein 1223611 2742179 LJ1294 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965149.1 1223240 R 257314 CDS NP_965150.1 42519220 2741928 complement(1223581..1223952) 1 NC_005362.1 hypothetical protein 1223952 2741928 LJ1295 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965150.1 1223581 R 257314 CDS NP_965151.1 42519221 2742527 complement(1223930..1225549) 1 NC_005362.1 ABC transporter ATPase and permease components 1225549 2742527 LJ1296 Lactobacillus johnsonii NCC 533 ABC transporter ATPase and permease components NP_965151.1 1223930 R 257314 CDS NP_965152.1 42519222 2741955 complement(1225918..1226733) 1 NC_005362.1 contains transcriptional regulator helix-turn-helix domain; hypothetical protein 1226733 2741955 LJ1297 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965152.1 1225918 R 257314 CDS NP_965153.1 42519223 2742251 1227014..1227241 1 NC_005362.1 putative transposase 1227241 2742251 LJ1298 Lactobacillus johnsonii NCC 533 putative transposase NP_965153.1 1227014 D 257314 CDS NP_965154.1 42519224 2742974 complement(1227296..1228132) 1 NC_005362.1 hypothetical protein 1228132 2742974 LJ1299 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965154.1 1227296 R 257314 CDS NP_965155.1 42519225 2742520 complement(1228139..1228954) 1 NC_005362.1 hypothetical protein 1228954 2742520 LJ1300 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965155.1 1228139 R 257314 CDS NP_965156.1 42519226 2743375 complement(1228957..1229664) 1 NC_005362.1 ABC transporter ATPase component 1229664 2743375 LJ1301 Lactobacillus johnsonii NCC 533 ABC transporter ATPase component NP_965156.1 1228957 R 257314 CDS NP_965157.1 42519227 2743055 complement(1229666..1230034) 1 NC_005362.1 contains bacterial regulatory gntR domain; hypothetical protein 1230034 2743055 LJ1302 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965157.1 1229666 R 257314 CDS NP_965158.1 42519228 2742392 complement(1230345..1231592) 1 NC_005362.1 catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 1231592 2742392 LJ1303 Lactobacillus johnsonii NCC 533 peptidase T NP_965158.1 1230345 R 257314 CDS NP_965159.1 42519229 2743756 complement(1231604..1232401) 1 NC_005362.1 contains DUF34 domain; hypothetical protein 1232401 2743756 LJ1304 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965159.1 1231604 R 257314 CDS NP_965160.1 42519230 2743226 complement(1232398..1233111) 1 NC_005362.1 hypothetical protein 1233111 2743226 LJ1305 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965160.1 1232398 R 257314 CDS NP_965161.1 42519231 2742021 1233280..1234557 1 NC_005362.1 transposase 1234557 2742021 LJ1306 Lactobacillus johnsonii NCC 533 transposase NP_965161.1 1233280 D 257314 CDS NP_965162.1 42519232 2741973 complement(1234673..1235527) 1 NC_005362.1 ABC transporter solute-binding component 1235527 2741973 LJ1307 Lactobacillus johnsonii NCC 533 ABC transporter solute-binding component NP_965162.1 1234673 R 257314 CDS NP_965163.1 42519233 2742002 complement(1235540..1236280) 1 NC_005362.1 ABC transporter ATPase component 1236280 2742002 LJ1309 Lactobacillus johnsonii NCC 533 ABC transporter ATPase component NP_965163.1 1235540 R 257314 CDS NP_965164.1 42519234 2741977 complement(1236284..1236961) 1 NC_005362.1 ABC transporter permease component 1236961 2741977 LJ1310 Lactobacillus johnsonii NCC 533 ABC transporter permease component NP_965164.1 1236284 R 257314 CDS NP_965165.1 42519235 2741965 complement(1236942..1237601) 1 NC_005362.1 ABC transporter permease component 1237601 2741965 LJ1311 Lactobacillus johnsonii NCC 533 ABC transporter permease component NP_965165.1 1236942 R 257314 CDS NP_965166.1 42519236 2741918 complement(1237816..1238673) 1 NC_005362.1 hypothetical protein 1238673 2741918 LJ1312 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965166.1 1237816 R 257314 CDS NP_965167.1 42519237 2741956 complement(1238782..1240311) 1 NC_005362.1 hypothetical protein 1240311 2741956 LJ1313 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965167.1 1238782 R 257314 CDS NP_965168.1 42519238 2742564 complement(1240392..1240997) 1 NC_005362.1 hypothetical protein 1240997 2742564 LJ1314 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965168.1 1240392 R 257314 CDS NP_965169.1 42519239 2741992 complement(1241016..1241528) 1 NC_005362.1 hypothetical protein 1241528 2741992 LJ1315 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965169.1 1241016 R 257314 CDS NP_965170.1 42519240 2742253 complement(1241541..1242428) 1 NC_005362.1 hypothetical protein 1242428 2742253 LJ1316 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965170.1 1241541 R 257314 CDS NP_965171.1 42519241 2742237 complement(1242786..1243904) 1 NC_005362.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium; RNA polymerase sigma factor RpoD 1243904 2742237 LJ1317 Lactobacillus johnsonii NCC 533 RNA polymerase sigma factor RpoD NP_965171.1 1242786 R 257314 CDS NP_965172.1 42519242 2742522 complement(1243920..1245731) 1 NC_005362.1 DNA primase 1245731 2742522 LJ1318 Lactobacillus johnsonii NCC 533 DNA primase NP_965172.1 1243920 R 257314 CDS NP_965173.1 42519243 2742529 complement(1245755..1247827) 1 NC_005362.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 1247827 glyS 2742529 glyS Lactobacillus johnsonii NCC 533 glycyl-tRNA synthetase subunit beta NP_965173.1 1245755 R 257314 CDS NP_965174.1 42519244 2742214 complement(1247820..1248737) 1 NC_005362.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 1248737 glyQ 2742214 glyQ Lactobacillus johnsonii NCC 533 glycyl-tRNA synthetase subunit alpha NP_965174.1 1247820 R 257314 CDS NP_965175.1 42519245 2742165 complement(1249032..1249784) 1 NC_005362.1 DNA repair protein RecO 1249784 2742165 LJ1321 Lactobacillus johnsonii NCC 533 DNA repair protein RecO NP_965175.1 1249032 R 257314 CDS NP_965176.1 42519246 2742181 complement(1249785..1250696) 1 NC_005362.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 1250696 era 2742181 era Lactobacillus johnsonii NCC 533 GTP-binding protein Era NP_965176.1 1249785 R 257314 CDS NP_965177.1 42519247 2742168 complement(1250721..1251248) 1 NC_005362.1 contains UPF0054 domain; hypothetical protein 1251248 2742168 LJ1323 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965177.1 1250721 R 257314 CDS NP_965178.1 42519248 2742630 complement(1251252..1252214) 1 NC_005362.1 PHOH-like protein 1252214 2742630 LJ1324 Lactobacillus johnsonii NCC 533 PHOH-like protein NP_965178.1 1251252 R 257314 CDS NP_965179.1 42519249 2742590 complement(1252242..1252685) 1 NC_005362.1 30S ribosomal protein S21 1252685 2742590 LJ1324b Lactobacillus johnsonii NCC 533 30S ribosomal protein S21 NP_965179.1 1252242 R 257314 CDS NP_965180.1 42519250 2742601 complement(1252792..1252968) 1 NC_005362.1 contains DUF186 domain; a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 1252968 rpsU 2742601 rpsU Lactobacillus johnsonii NCC 533 30S ribosomal protein S21 NP_965180.1 1252792 R 257314 CDS NP_965181.1 42519251 2742582 1253119..1253961 1 NC_005362.1 hypothetical protein 1253961 2742582 LJ1326 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965181.1 1253119 D 257314 CDS NP_965182.1 42519252 2742593 complement(1254027..1254347) 1 NC_005362.1 contains DUF59 domain; hypothetical protein 1254347 2742593 LJ1327 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965182.1 1254027 R 257314 CDS NP_965183.1 42519253 2742565 complement(1254349..1255230) 1 NC_005362.1 L-serine dehydratase alpha subunit 1255230 2742565 LJ1328 Lactobacillus johnsonii NCC 533 L-serine dehydratase alpha subunit NP_965183.1 1254349 R 257314 CDS NP_965184.1 42519254 2742243 complement(1255243..1255905) 1 NC_005362.1 L-serine dehydratase, beta chain 1255905 2742243 LJ1329 Lactobacillus johnsonii NCC 533 L-serine dehydratase, beta chain NP_965184.1 1255243 R 257314 CDS NP_965185.1 42519255 2742579 complement(1255994..1256872) 1 NC_005362.1 contains DUF161 domain; hypothetical protein 1256872 2742579 LJ1330 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965185.1 1255994 R 257314 CDS NP_965186.1 42519256 2741882 complement(1256938..1257495) 1 NC_005362.1 peptide methionine sulfoxide reductase MsrA 1257495 2741882 LJ1331 Lactobacillus johnsonii NCC 533 peptide methionine sulfoxide reductase MsrA NP_965186.1 1256938 R 257314 CDS NP_965187.1 42519257 2742651 complement(1257659..1257850) 1 NC_005362.1 hypothetical protein 1257850 2742651 LJ1387b Lactobacillus johnsonii NCC 533 hypothetical protein NP_965187.1 1257659 R 257314 CDS NP_965188.1 42519258 2742219 complement(1258132..1258893) 1 NC_005362.1 hypothetical protein 1258893 2742219 LJ1388 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965188.1 1258132 R 257314 CDS NP_965189.1 42519259 2742557 complement(1258898..1259326) 1 NC_005362.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 1259326 2742557 LJ1389 Lactobacillus johnsonii NCC 533 methionine sulfoxide reductase B NP_965189.1 1258898 R 257314 CDS NP_965190.1 42519260 2742223 1259431..1260615 1 NC_005362.1 aspartate aminotransferase 1260615 2742223 LJ1390 Lactobacillus johnsonii NCC 533 aspartate aminotransferase NP_965190.1 1259431 D 257314 CDS NP_965191.1 42519261 2742940 complement(1260691..1262544) 1 NC_005362.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 1262544 aspS 2742940 aspS Lactobacillus johnsonii NCC 533 aspartyl-tRNA synthetase NP_965191.1 1260691 R 257314 CDS NP_965192.1 42519262 2742816 complement(1262546..1263832) 1 NC_005362.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1263832 hisS 2742816 hisS Lactobacillus johnsonii NCC 533 histidyl-tRNA synthetase NP_965192.1 1262546 R 257314 CDS NP_965193.1 42519263 2742834 complement(1264115..1264552) 1 NC_005362.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 1264552 2742834 LJ1393 Lactobacillus johnsonii NCC 533 D-tyrosyl-tRNA(Tyr) deacylase NP_965193.1 1264115 R 257314 CDS NP_965194.1 42519264 2742938 complement(1264552..1266801) 1 NC_005362.1 GTP pyrophosphokinase 1266801 2742938 LJ1394 Lactobacillus johnsonii NCC 533 GTP pyrophosphokinase NP_965194.1 1264552 R 257314 CDS NP_965195.1 42519265 2742953 complement(1266819..1267199) 1 NC_005362.1 hypothetical protein 1267199 2742953 LJ1395 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965195.1 1266819 R 257314 CDS NP_965196.1 42519266 2742417 complement(1267232..1268179) 1 NC_005362.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; ribosomal protein L11 methyltransferase 1268179 prmA 2742417 prmA Lactobacillus johnsonii NCC 533 ribosomal protein L11 methyltransferase NP_965196.1 1267232 R 257314 CDS NP_965197.1 42519267 2742367 1268242..1268745 1 NC_005362.1 hypothetical protein 1268745 2742367 LJ1397 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965197.1 1268242 D 257314 CDS NP_965198.1 42519268 2742402 complement(1268868..1270490) 1 NC_005362.1 hypothetical protein 1270490 2742402 LJ1398 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965198.1 1268868 R 257314 CDS NP_965199.1 42519269 2742408 complement(1270656..1272347) 1 NC_005362.1 hypothetical protein 1272347 2742408 LJ1399 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965199.1 1270656 R 257314 CDS NP_965200.1 42519270 2742277 complement(1272427..1274856) 1 NC_005362.1 contains cation-transporting ATPase domain; hypothetical protein 1274856 2742277 LJ1400 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965200.1 1272427 R 257314 CDS NP_965201.1 42519271 2742274 complement(1274873..1275898) 1 NC_005362.1 L-asparaginase 1275898 2742274 LJ1401 Lactobacillus johnsonii NCC 533 L-asparaginase NP_965201.1 1274873 R 257314 CDS NP_965202.1 42519272 2742776 complement(1275989..1277371) 1 NC_005362.1 hypothetical protein 1277371 2742776 LJ1402 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965202.1 1275989 R 257314 CDS NP_965203.1 42519273 2742261 complement(1277480..1278406) 1 NC_005362.1 Converts (S)-lactate and NAD(+) to pyruvate and NADH; L-lactate dehydrogenase 1278406 ldh 2742261 ldh Lactobacillus johnsonii NCC 533 L-lactate dehydrogenase NP_965203.1 1277480 R 257314 CDS NP_965204.1 42519274 2743449 complement(1278486..1279859) 1 NC_005362.1 fumarate reductase flavoprotein subunit 1279859 2743449 LJ1404 Lactobacillus johnsonii NCC 533 fumarate reductase flavoprotein subunit NP_965204.1 1278486 R 257314 CDS NP_965205.1 42519275 2743538 complement(1279874..1281280) 1 NC_005362.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1281280 fumC 2743538 fumC Lactobacillus johnsonii NCC 533 fumarate hydratase NP_965205.1 1279874 R 257314 CDS NP_965206.1 42519276 2743145 complement(1281418..1282119) 1 NC_005362.1 ABC transporter permease component 1282119 2743145 LJ1406 Lactobacillus johnsonii NCC 533 ABC transporter permease component NP_965206.1 1281418 R 257314 CDS NP_965207.1 42519277 2743511 complement(1282112..1283161) 1 NC_005362.1 ABC transporter ATPase component 1283161 2743511 LJ1407 Lactobacillus johnsonii NCC 533 ABC transporter ATPase component NP_965207.1 1282112 R 257314 CDS NP_965208.1 42519278 2743441 complement(1283178..1284032) 1 NC_005362.1 D-methionine-binding lipoprotein MetQ precursor 1284032 2743441 LJ1408 Lactobacillus johnsonii NCC 533 D-methionine-binding lipoprotein MetQ precursor NP_965208.1 1283178 R 257314 CDS NP_965209.1 42519279 2742275 1284450..1285154 1 NC_005362.1 hypothetical protein 1285154 2742275 LJ1409 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965209.1 1284450 D 257314 CDS NP_965210.1 42519280 2743486 1285154..1286005 1 NC_005362.1 hypothetical protein 1286005 2743486 LJ1410 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965210.1 1285154 D 257314 CDS NP_965211.1 42519281 2742400 1286234..1286623 1 NC_005362.1 contains transcriptional regulator helix-turn-helix domain; hypothetical protein 1286623 2742400 LJ1411 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965211.1 1286234 D 257314 CDS NP_965212.1 42519282 2743525 complement(1286673..1287653) 1 NC_005362.1 conjugated bile salt hydrolase 1287653 2743525 LJ1412 Lactobacillus johnsonii NCC 533 conjugated bile salt hydrolase NP_965212.1 1286673 R 257314 CDS NP_965213.1 42519283 2743550 complement(1287749..1288708) 1 NC_005362.1 ABC transporter ATPase component 1288708 2743550 LJ1413 Lactobacillus johnsonii NCC 533 ABC transporter ATPase component NP_965213.1 1287749 R 257314 CDS NP_965214.1 42519284 2743565 complement(1288701..1289372) 1 NC_005362.1 ABC transporter ATPase component 1289372 2743565 LJ1414 Lactobacillus johnsonii NCC 533 ABC transporter ATPase component NP_965214.1 1288701 R 257314 CDS NP_965215.1 42519285 2743465 complement(1289440..1289721) 1 NC_005362.1 hypothetical protein 1289721 2743465 LJ1415 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965215.1 1289440 R 257314 CDS NP_965216.1 42519286 2743679 complement(1289835..1291121) 1 NC_005362.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1291121 eno 2743679 eno Lactobacillus johnsonii NCC 533 phosphopyruvate hydratase NP_965216.1 1289835 R 257314 CDS NP_965217.1 42519287 2743510 complement(1291299..1291883) 1 NC_005362.1 contains PAP2 superfamily domain; hypothetical protein 1291883 2743510 LJ1417 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965217.1 1291299 R 257314 CDS NP_965218.1 42519288 2743750 complement(1292553..1293500) 1 NC_005362.1 Lj928 prophage lysin 1293500 2743750 LJ1418 Lactobacillus johnsonii NCC 533 Lj928 prophage lysin NP_965218.1 1292553 R 257314 CDS NP_965219.1 42519289 2742547 complement(1293512..1293910) 1 NC_005362.1 Lj928 prophage holin 1293910 2742547 LJ1419 Lactobacillus johnsonii NCC 533 Lj928 prophage holin NP_965219.1 1293512 R 257314 CDS NP_965220.1 42519290 2743564 complement(1293910..1294122) 1 NC_005362.1 Lj928 prophage protein 1294122 2743564 LJ1420 Lactobacillus johnsonii NCC 533 Lj928 prophage protein NP_965220.1 1293910 R 257314 CDS NP_965221.1 42519291 2743240 complement(1294097..1294318) 1 NC_005362.1 Lj928 prophage protein 1294318 2743240 LJ1421 Lactobacillus johnsonii NCC 533 Lj928 prophage protein NP_965221.1 1294097 R 257314 CDS NP_965222.1 42519292 2742914 complement(1294386..1294787) 1 NC_005362.1 Lj928 prophage protein 1294787 2742914 LJ1422 Lactobacillus johnsonii NCC 533 Lj928 prophage protein NP_965222.1 1294386 R 257314 CDS NP_965223.1 42519293 2743321 complement(1294789..1297467) 1 NC_005362.1 Lj928 prophage protein 1297467 2743321 LJ1423 Lactobacillus johnsonii NCC 533 Lj928 prophage protein NP_965223.1 1294789 R 257314 CDS NP_965224.1 42519294 2743320 complement(1297448..1297840) 1 NC_005362.1 Lj928 prophage protein 1297840 2743320 LJ1424 Lactobacillus johnsonii NCC 533 Lj928 prophage protein NP_965224.1 1297448 R 257314 CDS NP_965225.1 42519295 2743296 complement(1297833..1300223) 1 NC_005362.1 Lj928 prophage protein 1300223 2743296 LJ1425 Lactobacillus johnsonii NCC 533 Lj928 prophage protein NP_965225.1 1297833 R 257314 CDS NP_965226.1 42519296 2743299 complement(1300223..1301032) 1 NC_005362.1 Lj928 prophage protein 1301032 2743299 LJ1425c Lactobacillus johnsonii NCC 533 Lj928 prophage protein NP_965226.1 1300223 R 257314 CDS NP_965227.1 42519297 2743263 complement(1301032..1305666) 1 NC_005362.1 Lj928 prophage protein 1305666 2743263 LJ1425d Lactobacillus johnsonii NCC 533 Lj928 prophage protein NP_965227.1 1301032 R 257314 CDS NP_965228.1 42519298 2743249 complement(1305666..1306007) 1 NC_005362.1 Lj928 prophage protein 1306007 2743249 LJ1426 Lactobacillus johnsonii NCC 533 Lj928 prophage protein NP_965228.1 1305666 R 257314 CDS NP_965229.1 42519299 2743295 complement(1306031..1306411) 1 NC_005362.1 Lj928 prophage minor tail protein 1306411 2743295 LJ1427 Lactobacillus johnsonii NCC 533 Lj928 prophage minor tail protein NP_965229.1 1306031 R 257314 CDS NP_965230.1 42519300 2743074 complement(1306469..1307038) 1 NC_005362.1 Lj928 prophage protein 1307038 2743074 LJ1428 Lactobacillus johnsonii NCC 533 Lj928 prophage protein NP_965230.1 1306469 R 257314 CDS NP_965231.1 42519301 2743116 complement(1307052..1307429) 1 NC_005362.1 Lj928 prophage protein 1307429 2743116 LJ1429 Lactobacillus johnsonii NCC 533 Lj928 prophage protein NP_965231.1 1307052 R 257314 CDS NP_965232.1 42519302 2743184 complement(1307499..1307777) 1 NC_005362.1 Lj928 prophage major tail protein 1307777 2743184 LJ1430 Lactobacillus johnsonii NCC 533 Lj928 prophage major tail protein NP_965232.1 1307499 R 257314 CDS NP_965233.1 42519303 2743153 complement(1307764..1308042) 1 NC_005362.1 Lj928 prophage protein 1308042 2743153 LJ1431 Lactobacillus johnsonii NCC 533 Lj928 prophage protein NP_965233.1 1307764 R 257314 CDS NP_965234.1 42519304 2743211 complement(1308011..1308385) 1 NC_005362.1 Lj928 prophage protein 1308385 2743211 LJ1432 Lactobacillus johnsonii NCC 533 Lj928 prophage protein NP_965234.1 1308011 R 257314 CDS NP_965235.1 42519305 2743165 complement(1308443..1309378) 1 NC_005362.1 Lj928 prophage protein 1309378 2743165 LJ1433 Lactobacillus johnsonii NCC 533 Lj928 prophage protein NP_965235.1 1308443 R 257314 CDS NP_965236.1 42519306 2743220 complement(1309394..1309960) 1 NC_005362.1 Lj928 prophage protein 1309960 2743220 LJ1434 Lactobacillus johnsonii NCC 533 Lj928 prophage protein NP_965236.1 1309394 R 257314 CDS NP_965237.1 42519307 2743120 complement(1310095..1310430) 1 NC_005362.1 Lj928 prophage major head protein 1310430 2743120 LJ1435 Lactobacillus johnsonii NCC 533 Lj928 prophage major head protein NP_965237.1 1310095 R 257314 CDS NP_965238.1 42519308 2743132 complement(1310443..1310676) 1 NC_005362.1 Lj928 prophage minor head protein 1310676 2743132 LJ1436 Lactobacillus johnsonii NCC 533 Lj928 prophage minor head protein NP_965238.1 1310443 R 257314 CDS NP_965239.1 42519309 2742764 complement(1310669..1312108) 1 NC_005362.1 Lj928 prophage protein 1312108 2742764 LJ1437 Lactobacillus johnsonii NCC 533 Lj928 prophage protein NP_965239.1 1310669 R 257314 CDS NP_965240.1 42519310 2743599 complement(1312092..1313504) 1 NC_005362.1 Lj928 prophage protein 1313504 2743599 LJ1438 Lactobacillus johnsonii NCC 533 Lj928 prophage protein NP_965240.1 1312092 R 257314 CDS NP_965241.1 42519311 2742465 complement(1313516..1314784) 1 NC_005362.1 Lj928 prophage protein 1314784 2742465 LJ1439 Lactobacillus johnsonii NCC 533 Lj928 prophage protein NP_965241.1 1313516 R 257314 CDS NP_965242.1 42519312 2743469 complement(1314777..1315232) 1 NC_005362.1 Lj928 prophage portal protein 1315232 2743469 LJ1440 Lactobacillus johnsonii NCC 533 Lj928 prophage portal protein NP_965242.1 1314777 R 257314 CDS NP_965243.1 42519313 2742451 complement(1315289..1315945) 1 NC_005362.1 Lj928 prophage terminase large subunit 1315945 2742451 LJ1441 Lactobacillus johnsonii NCC 533 Lj928 prophage terminase large subunit NP_965243.1 1315289 R 257314 CDS NP_965244.1 42519314 2742429 complement(1316127..1316651) 1 NC_005362.1 Lj928 prophage terminase small subunit 1316651 2742429 LJ1442 Lactobacillus johnsonii NCC 533 Lj928 prophage terminase small subunit NP_965244.1 1316127 R 257314 CDS NP_965245.1 42519315 2742711 complement(1317695..1318135) 1 NC_005362.1 Lj928 prophage protein 1318135 2742711 LJ1443 Lactobacillus johnsonii NCC 533 Lj928 prophage protein NP_965245.1 1317695 R 257314 CDS NP_965246.1 42519316 2742756 complement(1318224..1318445) 1 NC_005362.1 Lj928 prophage protein 1318445 2742756 LJ1444 Lactobacillus johnsonii NCC 533 Lj928 prophage protein NP_965246.1 1318224 R 257314 CDS NP_965247.1 42519317 2741874 complement(1318465..1319019) 1 NC_005362.1 Lj928 prophage protein 1319019 2741874 LJ1445 Lactobacillus johnsonii NCC 533 Lj928 prophage protein NP_965247.1 1318465 R 257314 CDS NP_965248.1 42519318 2741908 complement(1319021..1319419) 1 NC_005362.1 Lj928 prophage protein 1319419 2741908 LJ1446 Lactobacillus johnsonii NCC 533 Lj928 prophage protein NP_965248.1 1319021 R 257314 CDS NP_965249.1 42519319 2741895 complement(1319420..1319635) 1 NC_005362.1 Lj928 prophage protein 1319635 2741895 LJ1447 Lactobacillus johnsonii NCC 533 Lj928 prophage protein NP_965249.1 1319420 R 257314 CDS NP_965250.1 42519320 2742345 complement(1319795..1320685) 1 NC_005362.1 Lj928 prophage protein 1320685 2742345 LJ1448 Lactobacillus johnsonii NCC 533 Lj928 prophage protein NP_965250.1 1319795 R 257314 CDS NP_965251.1 42519321 2742716 complement(1320698..1321483) 1 NC_005362.1 Lj928 prophage protein 1321483 2742716 LJ1449 Lactobacillus johnsonii NCC 533 Lj928 prophage protein NP_965251.1 1320698 R 257314 CDS NP_965252.1 42519322 2742715 complement(1321485..1322378) 1 NC_005362.1 Lj928 prophage replication protein 1322378 2742715 LJ1450 Lactobacillus johnsonii NCC 533 Lj928 prophage replication protein NP_965252.1 1321485 R 257314 CDS NP_965253.1 42519323 2742714 complement(1322415..1322561) 1 NC_005362.1 Lj928 prophage recombination protein 1322561 2742714 LJ1451 Lactobacillus johnsonii NCC 533 Lj928 prophage recombination protein NP_965253.1 1322415 R 257314 CDS NP_965254.1 42519324 2742316 complement(1322575..1322724) 1 NC_005362.1 Lj928 prophage protein 1322724 2742316 LJ1452 Lactobacillus johnsonii NCC 533 Lj928 prophage protein NP_965254.1 1322575 R 257314 CDS NP_965255.1 42519325 2742457 complement(1323055..1323270) 1 NC_005362.1 Lj928 prophage protein 1323270 2742457 LJ1453 Lactobacillus johnsonii NCC 533 Lj928 prophage protein NP_965255.1 1323055 R 257314 CDS NP_965256.1 42519326 2743230 1323348..1323824 1 NC_005362.1 Lj928 prophage protein 1323824 2743230 LJ1454 Lactobacillus johnsonii NCC 533 Lj928 prophage protein NP_965256.1 1323348 D 257314 CDS NP_965257.1 42519327 2742760 complement(1323975..1324736) 1 NC_005362.1 Lj928 prophage antirepressor 1324736 2742760 LJ1455 Lactobacillus johnsonii NCC 533 Lj928 prophage antirepressor NP_965257.1 1323975 R 257314 CDS NP_965258.1 42519328 2742129 complement(1324764..1324985) 1 NC_005362.1 Lj928 prophage Cro-repressor 1324985 2742129 LJ1456 Lactobacillus johnsonii NCC 533 Lj928 prophage Cro-repressor NP_965258.1 1324764 R 257314 CDS NP_965259.1 42519329 2743385 1325165..1325602 1 NC_005362.1 Lj928 prophage repressor protein 1325602 2743385 LJ1457 Lactobacillus johnsonii NCC 533 Lj928 prophage repressor protein NP_965259.1 1325165 D 257314 CDS NP_965260.1 42519330 2743037 1325592..1325996 1 NC_005362.1 Lj928 prophage protein 1325996 2743037 LJ1458 Lactobacillus johnsonii NCC 533 Lj928 prophage protein NP_965260.1 1325592 D 257314 CDS NP_965261.1 42519331 2743346 1326052..1326624 1 NC_005362.1 Lj928 prophage protein 1326624 2743346 LJ1459 Lactobacillus johnsonii NCC 533 Lj928 prophage protein NP_965261.1 1326052 D 257314 CDS NP_965262.1 42519332 2743381 1326641..1326940 1 NC_005362.1 Lj928 prophage protein 1326940 2743381 LJ1460 Lactobacillus johnsonii NCC 533 Lj928 prophage protein NP_965262.1 1326641 D 257314 CDS NP_965263.1 42519333 2743062 1326949..1327245 1 NC_005362.1 Lj928 prophage protein 1327245 2743062 LJ1461 Lactobacillus johnsonii NCC 533 Lj928 prophage protein NP_965263.1 1326949 D 257314 CDS NP_965264.1 42519334 2743402 1327270..1327725 1 NC_005362.1 Lj928 prophage protein 1327725 2743402 LJ1462 Lactobacillus johnsonii NCC 533 Lj928 prophage protein NP_965264.1 1327270 D 257314 CDS NP_965265.1 42519335 2743050 1327718..1328095 1 NC_005362.1 Lj928 prophage protein 1328095 2743050 LJ1463 Lactobacillus johnsonii NCC 533 Lj928 prophage protein NP_965265.1 1327718 D 257314 CDS NP_965266.1 42519336 2743076 1328158..1329033 1 NC_005362.1 Lj928 prophage protein 1329033 2743076 LJ1464 Lactobacillus johnsonii NCC 533 Lj928 prophage protein NP_965266.1 1328158 D 257314 CDS NP_965267.1 42519337 2743387 1329202..1330377 1 NC_005362.1 Lj928 prophage integrase 1330377 2743387 LJ1465 Lactobacillus johnsonii NCC 533 Lj928 prophage integrase NP_965267.1 1329202 D 257314 CDS NP_965268.1 42519338 2743713 complement(1330838..1331686) 1 NC_005362.1 contains transcriptional regulator helix-turn-helix domain; hypothetical protein 1331686 2743713 LJ1466 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965268.1 1330838 R 257314 CDS NP_965269.1 42519339 2743694 1331810..1332469 1 NC_005362.1 P-type proton motive membrane ATPase-like protein 1332469 2743694 LJ1467 Lactobacillus johnsonii NCC 533 P-type proton motive membrane ATPase-like protein NP_965269.1 1331810 D 257314 CDS NP_965270.1 42519340 2742390 1332561..1333721 1 NC_005362.1 P-type proton motive membrane ATPase-like protein 1333721 2742390 LJ1468 Lactobacillus johnsonii NCC 533 P-type proton motive membrane ATPase-like protein NP_965270.1 1332561 D 257314 CDS NP_965271.1 42519341 2742456 complement(1333795..1335138) 1 NC_005362.1 major facilitator superfamily permease 1335138 2742456 LJ1469 Lactobacillus johnsonii NCC 533 major facilitator superfamily permease NP_965271.1 1333795 R 257314 CDS NP_965272.1 42519342 2742898 complement(1335313..1335816) 1 NC_005362.1 dihydrofolate reductase 1335816 2742898 LJ1470 Lactobacillus johnsonii NCC 533 dihydrofolate reductase NP_965272.1 1335313 R 257314 CDS NP_965273.1 42519343 2743407 complement(1335834..1336790) 1 NC_005362.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 1336790 thyA 2743407 thyA Lactobacillus johnsonii NCC 533 thymidylate synthase NP_965273.1 1335834 R 257314 CDS NP_965274.1 42519344 2743013 1336925..1338412 1 NC_005362.1 cardiolipinsynthetase 1338412 2743013 LJ1472 Lactobacillus johnsonii NCC 533 cardiolipinsynthetase NP_965274.1 1336925 D 257314 CDS NP_965275.1 42519345 2742929 complement(1338461..1339969) 1 NC_005362.1 amino acid transporter 1339969 2742929 LJ1473 Lactobacillus johnsonii NCC 533 amino acid transporter NP_965275.1 1338461 R 257314 CDS NP_965276.1 42519346 2742126 complement(1340094..1340621) 1 NC_005362.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 1340621 2742126 LJ1474 Lactobacillus johnsonii NCC 533 adenine phosphoribosyltransferase NP_965276.1 1340094 R 257314 CDS NP_965277.1 42519347 2742115 complement(1340756..1343026) 1 NC_005362.1 contains recJ exonuclease domain; hypothetical protein 1343026 2742115 LJ1475 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965277.1 1340756 R 257314 CDS NP_965278.1 42519348 2742051 complement(1343125..1343814) 1 NC_005362.1 hypothetical protein 1343814 2742051 LJ1476 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965278.1 1343125 R 257314 CDS NP_965279.1 42519349 2743369 complement(1343952..1345790) 1 NC_005362.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1345790 2743369 LJ1477 Lactobacillus johnsonii NCC 533 GTP-binding protein LepA NP_965279.1 1343952 R 257314 CDS NP_965280.1 42519350 2743386 complement(1345934..1347100) 1 NC_005362.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 1347100 2743386 LJ1478 Lactobacillus johnsonii NCC 533 chaperone protein DnaJ NP_965280.1 1345934 R 257314 CDS NP_965281.1 42519351 2742135 complement(1347180..1349054) 1 NC_005362.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 1349054 dnaK 2742135 dnaK Lactobacillus johnsonii NCC 533 molecular chaperone DnaK NP_965281.1 1347180 R 257314 CDS NP_965282.1 42519352 2742240 complement(1349072..1349650) 1 NC_005362.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 1349650 2742240 LJ1480 Lactobacillus johnsonii NCC 533 heat shock protein GrpE NP_965282.1 1349072 R 257314 CDS NP_965283.1 42519353 2742019 complement(1349662..1350720) 1 NC_005362.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 1350720 hrcA 2742019 hrcA Lactobacillus johnsonii NCC 533 heat-inducible transcription repressor NP_965283.1 1349662 R 257314 CDS NP_965284.1 42519354 2742445 complement(1351132..1351488) 1 NC_005362.1 hypothetical protein 1351488 2742445 LJ1482 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965284.1 1351132 R 257314 CDS NP_965285.1 42519355 2742455 complement(1351504..1353015) 1 NC_005362.1 ABC transporter ATPase component 1353015 2742455 LJ1483 Lactobacillus johnsonii NCC 533 ABC transporter ATPase component NP_965285.1 1351504 R 257314 CDS NP_965286.1 42519356 2741896 complement(1353274..1354212) 1 NC_005362.1 riboflavin kinase/FMN adenylyltransferase 1354212 2741896 LJ1484 Lactobacillus johnsonii NCC 533 riboflavin kinase/FMN adenylyltransferase NP_965286.1 1353274 R 257314 CDS NP_965287.1 42519357 2742453 complement(1354225..1355118) 1 NC_005362.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 1355118 truB 2742453 truB Lactobacillus johnsonii NCC 533 tRNA pseudouridine synthase B NP_965287.1 1354225 R 257314 CDS NP_965288.1 42519358 2742363 complement(1355164..1355535) 1 NC_005362.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 1355535 2742363 LJ1486 Lactobacillus johnsonii NCC 533 ribosome-binding factor A NP_965288.1 1355164 R 257314 CDS NP_965289.1 42519359 2743204 complement(1355566..1358208) 1 NC_005362.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 1358208 infB 2743204 infB Lactobacillus johnsonii NCC 533 translation initiation factor IF-2 NP_965289.1 1355566 R 257314 CDS NP_965290.1 42519360 2743595 complement(1358213..1358524) 1 NC_005362.1 contains ribosomal protein L7Ae/L30e/S12e/Gadd4 domain; hypothetical protein 1358524 2743595 LJ1488 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965290.1 1358213 R 257314 CDS NP_965291.1 42519361 2742430 complement(1358527..1358823) 1 NC_005362.1 hypothetical protein 1358823 2742430 LJ1489 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965291.1 1358527 R 257314 CDS NP_965292.1 42519362 2742182 complement(1358834..1360054) 1 NC_005362.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 1360054 nusA 2742182 nusA Lactobacillus johnsonii NCC 533 transcription elongation factor NusA NP_965292.1 1358834 R 257314 CDS NP_965293.1 42519363 2742551 complement(1360074..1360550) 1 NC_005362.1 contains DUF150 domain; in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 1360550 2742551 LJ1491 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965293.1 1360074 R 257314 CDS NP_965294.1 42519364 2742323 complement(1360658..1364956) 1 NC_005362.1 DNA polymerase III alpha subunit 1364956 2742323 LJ1492 Lactobacillus johnsonii NCC 533 DNA polymerase III alpha subunit NP_965294.1 1360658 R 257314 CDS NP_965295.1 42519365 2742318 complement(1364962..1366659) 1 NC_005362.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 1366659 2742318 LJ1493 Lactobacillus johnsonii NCC 533 prolyl-tRNA synthetase NP_965295.1 1364962 R 257314 CDS NP_965296.1 42519366 2741993 complement(1366676..1367932) 1 NC_005362.1 protease eep 1367932 2741993 LJ1494 Lactobacillus johnsonii NCC 533 protease eep NP_965296.1 1366676 R 257314 CDS NP_965297.1 42519367 2742395 complement(1367945..1368736) 1 NC_005362.1 phosphatidate cytidylyltransferase 1368736 2742395 LJ1495 Lactobacillus johnsonii NCC 533 phosphatidate cytidylyltransferase NP_965297.1 1367945 R 257314 CDS NP_965298.1 42519368 2742967 complement(1368763..1369482) 1 NC_005362.1 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase 1369482 2742967 LJ1496 Lactobacillus johnsonii NCC 533 undecaprenyl pyrophosphate synthase NP_965298.1 1368763 R 257314 CDS NP_965299.1 42519369 2742029 complement(1369501..1370058) 1 NC_005362.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1370058 frr 2742029 frr Lactobacillus johnsonii NCC 533 ribosome recycling factor NP_965299.1 1369501 R 257314 CDS NP_965300.1 42519370 2743170 complement(1370058..1370783) 1 NC_005362.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 1370783 pyrH 2743170 pyrH Lactobacillus johnsonii NCC 533 uridylate kinase NP_965300.1 1370058 R 257314 CDS NP_965301.1 42519371 2743271 complement(1370893..1371918) 1 NC_005362.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1371918 tsf 2743271 tsf Lactobacillus johnsonii NCC 533 elongation factor Ts NP_965301.1 1370893 R 257314 CDS NP_965302.1 42519372 2742070 complement(1371956..1372741) 1 NC_005362.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 1372741 rpsB 2742070 rpsB Lactobacillus johnsonii NCC 533 30S ribosomal protein S2 NP_965302.1 1371956 R 257314 CDS NP_965303.1 42519373 2743743 complement(1372895..1373917) 1 NC_005362.1 contains SAM-dependent methyltransferase domain; hypothetical protein 1373917 2743743 LJ1501 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965303.1 1372895 R 257314 CDS NP_965304.1 42519374 2743171 1373986..1374600 1 NC_005362.1 contains acyltransferase domain; hypothetical protein 1374600 2743171 LJ1502 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965304.1 1373986 D 257314 CDS NP_965305.1 42519375 2743110 1374668..1375849 1 NC_005362.1 contains cyclopropane-fatty-acyl-phospholipid domain; hypothetical protein 1375849 2743110 LJ1503 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965305.1 1374668 D 257314 CDS NP_965306.1 42519376 2742986 complement(1375893..1377575) 1 NC_005362.1 ABC transporter ATPase and permease components 1377575 2742986 LJ1504 Lactobacillus johnsonii NCC 533 ABC transporter ATPase and permease components NP_965306.1 1375893 R 257314 CDS NP_965307.1 42519377 2742294 complement(1377672..1379441) 1 NC_005362.1 ABC transporter ATPase and permease components 1379441 2742294 LJ1505 Lactobacillus johnsonii NCC 533 ABC transporter ATPase and permease components NP_965307.1 1377672 R 257314 CDS NP_965308.1 42519378 2743705 complement(1379518..1379739) 1 NC_005362.1 hypothetical protein 1379739 2743705 LJ1506 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965308.1 1379518 R 257314 CDS NP_965309.1 42519379 2743112 complement(1379812..1380060) 1 NC_005362.1 hypothetical protein 1380060 2743112 LJ1507 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965309.1 1379812 R 257314 CDS NP_965310.1 42519380 2743287 1380198..1380821 1 NC_005362.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 1380821 2743287 LJ1508 Lactobacillus johnsonii NCC 533 LexA repressor NP_965310.1 1380198 D 257314 CDS NP_965311.1 42519381 2742531 complement(1380858..1381496) 1 NC_005362.1 contains uracil-DNA glycosylase domain; hypothetical protein 1381496 2742531 LJ1509 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965311.1 1380858 R 257314 CDS NP_965312.1 42519382 2742134 complement(1381480..1381899) 1 NC_005362.1 contains MutT-like domain; hypothetical protein 1381899 2742134 LJ1510 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965312.1 1381480 R 257314 CDS NP_965313.1 42519383 2741869 1382095..1382736 1 NC_005362.1 signal peptidase I 1382736 2741869 LJ1511 Lactobacillus johnsonii NCC 533 signal peptidase I NP_965313.1 1382095 D 257314 CDS NP_965314.1 42519384 2742265 complement(1382830..1383180) 1 NC_005362.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1383180 rplS 2742265 rplS Lactobacillus johnsonii NCC 533 50S ribosomal protein L19 NP_965314.1 1382830 R 257314 CDS NP_965315.1 42519385 2743748 complement(1383294..1384016) 1 NC_005362.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1384016 trmD 2743748 trmD Lactobacillus johnsonii NCC 533 tRNA (guanine-N(1)-)-methyltransferase NP_965315.1 1383294 R 257314 CDS NP_965316.1 42519386 2743745 complement(1384006..1384527) 1 NC_005362.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1384527 rimM 2743745 rimM Lactobacillus johnsonii NCC 533 16S rRNA-processing protein RimM NP_965316.1 1384006 R 257314 CDS NP_965317.1 42519387 2742288 complement(1384596..1384868) 1 NC_005362.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 1384868 rpsP 2742288 rpsP Lactobacillus johnsonii NCC 533 30S ribosomal protein S16 NP_965317.1 1384596 R 257314 CDS NP_965318.1 42519388 2743498 complement(1384955..1386385) 1 NC_005362.1 signal recognition particle protein 1386385 2743498 LJ1516 Lactobacillus johnsonii NCC 533 signal recognition particle protein NP_965318.1 1384955 R 257314 CDS NP_965319.1 42519389 2742978 complement(1386387..1386728) 1 NC_005362.1 contains uncharacterized BCR domain; hypothetical protein 1386728 2742978 LJ1517 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965319.1 1386387 R 257314 CDS NP_965320.1 42519390 2743101 complement(1386872..1388296) 1 NC_005362.1 dipeptidase 1388296 2743101 LJ1518 Lactobacillus johnsonii NCC 533 dipeptidase NP_965320.1 1386872 R 257314 CDS NP_965321.1 42519391 2742532 complement(1388336..1389667) 1 NC_005362.1 signal recognition particle receptor FtsY 1389667 2742532 LJ1519 Lactobacillus johnsonii NCC 533 signal recognition particle receptor FtsY NP_965321.1 1388336 R 257314 CDS NP_965322.1 42519392 2743764 complement(1389670..1393230) 1 NC_005362.1 chromosome partitioning protein Smc 1393230 2743764 LJ1520 Lactobacillus johnsonii NCC 533 chromosome partitioning protein Smc NP_965322.1 1389670 R 257314 CDS NP_965323.1 42519393 2743657 complement(1393245..1393925) 1 NC_005362.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1393925 rnc 2743657 rnc Lactobacillus johnsonii NCC 533 ribonuclease III NP_965323.1 1393245 R 257314 CDS NP_965324.1 42519394 2743738 complement(1394033..1395793) 1 NC_005362.1 oligopeptide ABC transporter solute-binding component 1395793 2743738 LJ1522 Lactobacillus johnsonii NCC 533 oligopeptide ABC transporter solute-binding component NP_965324.1 1394033 R 257314 CDS NP_965325.1 42519395 2742610 complement(1395921..1397675) 1 NC_005362.1 oligopeptide ABC transporter solute-binding component 1397675 2742610 LJ1523 Lactobacillus johnsonii NCC 533 oligopeptide ABC transporter solute-binding component NP_965325.1 1395921 R 257314 CDS NP_965326.1 42519396 2742669 complement(1397968..1398882) 1 NC_005362.1 oligopeptide ABC transporter permease component 1398882 2742669 LJ1524 Lactobacillus johnsonii NCC 533 oligopeptide ABC transporter permease component NP_965326.1 1397968 R 257314 CDS NP_965327.1 42519397 2742242 complement(1398899..1399861) 1 NC_005362.1 oligopeptide ABC transporter permease component 1399861 2742242 LJ1525 Lactobacillus johnsonii NCC 533 oligopeptide ABC transporter permease component NP_965327.1 1398899 R 257314 CDS NP_965328.1 42519398 2743592 complement(1399864..1400832) 1 NC_005362.1 oligopeptide ABC transporter ATPase component 1400832 2743592 LJ1526 Lactobacillus johnsonii NCC 533 oligopeptide ABC transporter ATPase component NP_965328.1 1399864 R 257314 CDS NP_965329.1 42519399 2742796 complement(1400839..1401849) 1 NC_005362.1 oligopeptide ABC transporter ATPase component 1401849 2742796 LJ1527 Lactobacillus johnsonii NCC 533 oligopeptide ABC transporter ATPase component NP_965329.1 1400839 R 257314 CDS NP_965330.1 42519400 2742875 complement(1402007..1402249) 1 NC_005362.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1402249 acpP 2742875 acpP Lactobacillus johnsonii NCC 533 acyl carrier protein NP_965330.1 1402007 R 257314 CDS NP_965331.1 42519401 2742488 complement(1402304..1403305) 1 NC_005362.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 1403305 2742488 LJ1529 Lactobacillus johnsonii NCC 533 putative glycerol-3-phosphate acyltransferase PlsX NP_965331.1 1402304 R 257314 CDS NP_965332.1 42519402 2743048 complement(1403323..1405362) 1 NC_005362.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 1405362 2743048 LJ1530 Lactobacillus johnsonii NCC 533 ATP-dependent DNA helicase RecG NP_965332.1 1403323 R 257314 CDS NP_965333.1 42519403 2742980 complement(1405366..1407030) 1 NC_005362.1 contains DAK2 domain; hypothetical protein 1407030 2742980 LJ1531 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965333.1 1405366 R 257314 CDS NP_965334.1 42519404 2742149 complement(1407052..1407414) 1 NC_005362.1 contains uncharacterized BCR domain; hypothetical protein 1407414 2742149 LJ1532 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965334.1 1407052 R 257314 CDS NP_965335.1 42519405 2742008 1407585..1407770 1 NC_005362.1 required for 70S ribosome assembly; 50S ribosomal protein L28 1407770 rpmB 2742008 rpmB Lactobacillus johnsonii NCC 533 50S ribosomal protein L28 NP_965335.1 1407585 D 257314 CDS NP_965336.1 42519406 2741901 complement(1407818..1408486) 1 NC_005362.1 contains predicted nucleotide-binding domain; hypothetical protein 1408486 2741901 LJ1534 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965336.1 1407818 R 257314 CDS NP_965337.1 42519407 2743664 complement(1408483..1409133) 1 NC_005362.1 ribulose-phosphate 3-epimerase 1409133 2743664 LJ1535 Lactobacillus johnsonii NCC 533 ribulose-phosphate 3-epimerase NP_965337.1 1408483 R 257314 CDS NP_965338.1 42519408 2743105 complement(1409142..1410035) 1 NC_005362.1 contains predicted GTPase domain; hypothetical protein 1410035 2743105 LJ1536 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965338.1 1409142 R 257314 CDS NP_965339.1 42519409 2743054 complement(1410035..1412023) 1 NC_005362.1 contains protein kinase domain; hypothetical protein 1412023 2743054 LJ1537 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965339.1 1410035 R 257314 CDS NP_965340.1 42519410 2743611 complement(1412026..1412778) 1 NC_005362.1 contains protein phosphatase 2C domain; hypothetical protein 1412778 2743611 LJ1538 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965340.1 1412026 R 257314 CDS NP_965341.1 42519411 2743420 complement(1412785..1414101) 1 NC_005362.1 SUN protein 1414101 2743420 LJ1539 Lactobacillus johnsonii NCC 533 SUN protein NP_965341.1 1412785 R 257314 CDS NP_965342.1 42519412 2743392 complement(1414094..1415038) 1 NC_005362.1 methionyl-tRNA formyltransferase 1415038 2743392 LJ1540 Lactobacillus johnsonii NCC 533 methionyl-tRNA formyltransferase NP_965342.1 1414094 R 257314 CDS NP_965343.1 42519413 2742452 complement(1415060..1417456) 1 NC_005362.1 primosomal protein N' 1417456 2742452 LJ1541 Lactobacillus johnsonii NCC 533 primosomal protein N' NP_965343.1 1415060 R 257314 CDS NP_965344.1 42519414 2743138 complement(1417511..1417729) 1 NC_005362.1 DNA-directed RNA polymerase omega subunit 1417729 2743138 LJ1542 Lactobacillus johnsonii NCC 533 DNA-directed RNA polymerase omega subunit NP_965344.1 1417511 R 257314 CDS NP_965345.1 42519415 2743758 complement(1417733..1418347) 1 NC_005362.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 1418347 gmk 2743758 gmk Lactobacillus johnsonii NCC 533 guanylate kinase NP_965345.1 1417733 R 257314 CDS NP_965346.1 42519416 2742922 1418508..1418801 1 NC_005362.1 hypothetical protein 1418801 2742922 LJ1544 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965346.1 1418508 D 257314 CDS NP_965347.1 42519417 2742918 complement(1418861..1420540) 1 NC_005362.1 DNA repair protein RecN 1420540 2742918 LJ1545 Lactobacillus johnsonii NCC 533 DNA repair protein RecN NP_965347.1 1418861 R 257314 CDS NP_965348.1 42519418 2742663 complement(1420551..1421363) 1 NC_005362.1 hemolysin-like protein 1421363 2742663 LJ1546 Lactobacillus johnsonii NCC 533 hemolysin-like protein NP_965348.1 1420551 R 257314 CDS NP_965349.1 42519419 2742903 complement(1421367..1422233) 1 NC_005362.1 farnesyl-diphosphate synthase; geranyltranstransferase 1422233 2742903 LJ1547 Lactobacillus johnsonii NCC 533 geranyltranstransferase NP_965349.1 1421367 R 257314 CDS NP_965350.1 42519420 2743224 complement(1422234..1422479) 1 NC_005362.1 catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 1422479 2743224 LJ1548 Lactobacillus johnsonii NCC 533 exodeoxyribonuclease VII small subunit NP_965350.1 1422234 R 257314 CDS NP_965351.1 42519421 2742643 complement(1422460..1423830) 1 NC_005362.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 1423830 xseA 2742643 xseA Lactobacillus johnsonii NCC 533 exodeoxyribonuclease VII large subunit NP_965351.1 1422460 R 257314 CDS NP_965352.1 42519422 2742981 complement(1423820..1424668) 1 NC_005362.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 1424668 2742981 LJ1550 Lactobacillus johnsonii NCC 533 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase NP_965352.1 1423820 R 257314 CDS NP_965353.1 42519423 2743285 complement(1424715..1425116) 1 NC_005362.1 contains NusB domain; hypothetical protein 1425116 2743285 LJ1551 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965353.1 1424715 R 257314 CDS NP_965354.1 42519424 2743305 complement(1425117..1425557) 1 NC_005362.1 contains uncharacterized BCR domain; hypothetical protein 1425557 2743305 LJ1552 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965354.1 1425117 R 257314 CDS NP_965355.1 42519425 2743316 complement(1425575..1426144) 1 NC_005362.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1426144 2743316 LJ1553 Lactobacillus johnsonii NCC 533 elongation factor P NP_965355.1 1425575 R 257314 CDS NP_965356.1 42519426 2743515 complement(1426229..1427338) 1 NC_005362.1 Xaa-Pro aminopeptidase 1427338 2743515 LJ1554 Lactobacillus johnsonii NCC 533 Xaa-Pro aminopeptidase NP_965356.1 1426229 R 257314 CDS NP_965357.1 42519427 2742180 complement(1427411..1427710) 1 NC_005362.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 1427710 rpmA 2742180 rpmA Lactobacillus johnsonii NCC 533 50S ribosomal protein L27 NP_965357.1 1427411 R 257314 CDS NP_965358.1 42519428 2742654 complement(1427730..1428041) 1 NC_005362.1 50S ribosomal protein L21 1428041 rplU 2742654 rplU Lactobacillus johnsonii NCC 533 50S ribosomal protein L21 NP_965358.1 1427730 R 257314 CDS NP_965359.1 42519429 2743642 1428255..1428611 1 NC_005362.1 contains arsenate reductase ArsG and related proteins, glutaredoxin family domain; hypothetical protein 1428611 2743642 LJ1556b Lactobacillus johnsonii NCC 533 hypothetical protein NP_965359.1 1428255 D 257314 CDS NP_965360.1 42519430 2743562 complement(1428606..1429445) 1 NC_005362.1 contains DUF161 domain; hypothetical protein 1429445 2743562 LJ1557 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965360.1 1428606 R 257314 CDS NP_965361.1 42519431 2743588 complement(1429523..1430221) 1 NC_005362.1 hypothetical protein 1430221 2743588 LJ1558 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965361.1 1429523 R 257314 CDS NP_965362.1 42519432 2743714 complement(1430199..1430843) 1 NC_005362.1 hypothetical protein 1430843 2743714 LJ1559 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965362.1 1430199 R 257314 CDS NP_965363.1 42519433 2742462 complement(1431135..1431536) 1 NC_005362.1 hypothetical protein 1431536 2742462 LJ1560 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965363.1 1431135 R 257314 CDS NP_965364.1 42519434 2742376 complement(1431540..1431719) 1 NC_005362.1 4-OT; member of subfamily 5; forms a dimer; the function in the Escherichia coli cell is unknown; 4-oxalocrotonate tautomerase 1431719 2742376 LJ1560b Lactobacillus johnsonii NCC 533 4-oxalocrotonate tautomerase NP_965364.1 1431540 R 257314 CDS NP_965365.1 42519435 2743568 complement(1431772..1432329) 1 NC_005362.1 hypothetical protein 1432329 2743568 LJ1561 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965365.1 1431772 R 257314 CDS NP_965366.1 42519436 2742973 complement(1432333..1433166) 1 NC_005362.1 contains pyridoxal/pyridoxine/pyridoxamine kinase domain; hypothetical protein 1433166 2742973 LJ1562 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965366.1 1432333 R 257314 CDS NP_965367.1 42519437 2742188 complement(1433163..1433624) 1 NC_005362.1 hypothetical protein 1433624 2742188 LJ1563 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965367.1 1433163 R 257314 CDS NP_965368.1 42519438 2742131 complement(1433645..1434298) 1 NC_005362.1 hypothetical protein 1434298 2742131 LJ1564 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965368.1 1433645 R 257314 CDS NP_965369.1 42519439 2742584 complement(1434321..1436117) 1 NC_005362.1 hypothetical protein 1436117 2742584 LJ1565 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965369.1 1434321 R 257314 CDS NP_965370.1 42519440 2742315 complement(1436315..1437214) 1 NC_005362.1 contains transcriptional regulator helix-turn-helix domain; hypothetical protein 1437214 2742315 LJ1566 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965370.1 1436315 R 257314 CDS NP_965371.1 42519441 2743350 complement(1437229..1437621) 1 NC_005362.1 contains transcriptional regulator helix-turn-helix domain, AraC family; hypothetical protein 1437621 2743350 LJ1567 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965371.1 1437229 R 257314 CDS NP_965372.1 42519442 2743463 complement(1437764..1438105) 1 NC_005362.1 hypothetical protein 1438105 2743463 LJ1568 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965372.1 1437764 R 257314 CDS NP_965373.1 42519443 2743744 complement(1438105..1438833) 1 NC_005362.1 contains bacterial regulatory ROK domain; hypothetical protein 1438833 2743744 LJ1569 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965373.1 1438105 R 257314 CDS NP_965374.1 42519444 2743646 complement(1439198..1439677) 1 NC_005362.1 hypothetical protein 1439677 2743646 LJ1570 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965374.1 1439198 R 257314 CDS NP_965375.1 42519445 2742475 1440688..1441077 1 NC_005362.1 hypothetical protein 1441077 2742475 LJ1571 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965375.1 1440688 D 257314 CDS NP_965376.1 42519446 2743752 complement(1441258..1442574) 1 NC_005362.1 aminopeptidase C 1442574 2743752 LJ1572 Lactobacillus johnsonii NCC 533 aminopeptidase C NP_965376.1 1441258 R 257314 CDS NP_965377.1 42519447 2743704 complement(1442734..1443099) 1 NC_005362.1 hypothetical protein 1443099 2743704 LJ1573 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965377.1 1442734 R 257314 CDS NP_965378.1 42519448 2742658 1443781..1445535 1 NC_005362.1 ABC transporter solute-binding component 1445535 2742658 LJ1574 Lactobacillus johnsonii NCC 533 ABC transporter solute-binding component NP_965378.1 1443781 D 257314 CDS NP_965379.1 42519449 2743167 complement(1445622..1446059) 1 NC_005362.1 contains bacterial regulatory merR domain; hypothetical protein 1446059 2743167 LJ1575 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965379.1 1445622 R 257314 CDS NP_965380.1 42519450 2743197 1446236..1447708 1 NC_005362.1 major facilitator superfamily permease 1447708 2743197 LJ1576 Lactobacillus johnsonii NCC 533 major facilitator superfamily permease NP_965380.1 1446236 D 257314 CDS NP_965381.1 42519451 2742580 1447708..1448268 1 NC_005362.1 hypothetical protein 1448268 2742580 LJ1577 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965381.1 1447708 D 257314 CDS NP_965382.1 42519452 2743302 complement(1448318..1449106) 1 NC_005362.1 hypothetical protein 1449106 2743302 LJ1578 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965382.1 1448318 R 257314 CDS NP_965383.1 42519453 2742133 complement(1449391..1449978) 1 NC_005362.1 contains fic protein domain; hypothetical protein 1449978 2742133 LJ1579 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965383.1 1449391 R 257314 CDS NP_965384.1 42519454 2743260 complement(1449971..1450390) 1 NC_005362.1 hypothetical protein 1450390 2743260 LJ1580 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965384.1 1449971 R 257314 CDS NP_965385.1 42519455 2743139 complement(1450536..1452347) 1 NC_005362.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 1452347 2743139 LJ1581 Lactobacillus johnsonii NCC 533 glucosamine--fructose-6-phosphate aminotransferase NP_965385.1 1450536 R 257314 CDS NP_965386.1 42519456 2742688 complement(1452614..1454230) 1 NC_005362.1 ABC transporter ATPase and permease components 1454230 2742688 LJ1582 Lactobacillus johnsonii NCC 533 ABC transporter ATPase and permease components NP_965386.1 1452614 R 257314 CDS NP_965387.1 42519457 2741900 complement(1454906..1455676) 1 NC_005362.1 contains haloacid dehalogenase-like hydrolase domain; hypothetical protein 1455676 2741900 LJ1583 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965387.1 1454906 R 257314 CDS NP_965388.1 42519458 2741870 complement(1455763..1458297) 1 NC_005362.1 aminopeptidase N 1458297 2741870 LJ1584 Lactobacillus johnsonii NCC 533 aminopeptidase N NP_965388.1 1455763 R 257314 CDS NP_965389.1 42519459 2743255 1458495..1460879 1 NC_005362.1 catalyzes the removal of N-terminal dipeptides when proline is the penultimate residue; x-prolyl-dipeptidyl aminopeptidase 1460879 2743255 LJ1585 Lactobacillus johnsonii NCC 533 x-prolyl-dipeptidyl aminopeptidase NP_965389.1 1458495 D 257314 CDS NP_965390.1 42519460 2743362 complement(1461048..1462289) 1 NC_005362.1 two-component system histidine kinase 1462289 2743362 LJ1586 Lactobacillus johnsonii NCC 533 two-component system histidine kinase NP_965390.1 1461048 R 257314 CDS NP_965391.1 42519461 2743644 complement(1462333..1462998) 1 NC_005362.1 two-component system response regulator 1462998 2743644 LJ1587 Lactobacillus johnsonii NCC 533 two-component system response regulator NP_965391.1 1462333 R 257314 CDS NP_965392.1 42519462 2743512 complement(1463003..1463614) 1 NC_005362.1 hypothetical protein 1463614 2743512 LJ1588 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965392.1 1463003 R 257314 CDS NP_965393.1 42519463 2742467 complement(1463682..1464614) 1 NC_005362.1 hypothetical protein 1464614 2742467 LJ1589 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965393.1 1463682 R 257314 CDS NP_965394.1 42519464 2742091 complement(1464876..1465286) 1 NC_005362.1 hypothetical protein 1465286 2742091 LJ1590 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965394.1 1464876 R 257314 CDS NP_965395.1 42519465 2743446 complement(1465299..1466846) 1 NC_005362.1 possible glycine betaine/carnitine/choline; ABC transporter permease component 1466846 2743446 LJ1591 Lactobacillus johnsonii NCC 533 ABC transporter permease component NP_965395.1 1465299 R 257314 CDS NP_965396.1 42519466 2742448 complement(1466839..1467801) 1 NC_005362.1 possible glycine betaine/carnitine/choline; ABC transporter ATPase component 1467801 2742448 LJ1592 Lactobacillus johnsonii NCC 533 ABC transporter ATPase component NP_965396.1 1466839 R 257314 CDS NP_965397.1 42519467 2742628 complement(1467932..1468837) 1 NC_005362.1 UTP--glucose-1-phosphate uridylyltransferase 1468837 2742628 LJ1593 Lactobacillus johnsonii NCC 533 UTP--glucose-1-phosphate uridylyltransferase NP_965397.1 1467932 R 257314 CDS NP_965398.1 42519468 2743677 complement(1468911..1469819) 1 NC_005362.1 contains tRNA-processing ribonuclease BN domain; hypothetical protein 1469819 2743677 LJ1594 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965398.1 1468911 R 257314 CDS NP_965399.1 42519469 2743633 complement(1469834..1470658) 1 NC_005362.1 methionine aminopeptidase 1470658 2743633 LJ1595 Lactobacillus johnsonii NCC 533 methionine aminopeptidase NP_965399.1 1469834 R 257314 CDS NP_965400.1 42519470 2743053 1470844..1471290 1 NC_005362.1 contains flavodoxin domain; hypothetical protein 1471290 2743053 LJ1596 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965400.1 1470844 D 257314 CDS NP_965401.1 42519471 2743372 1471283..1471792 1 NC_005362.1 hypothetical protein 1471792 2743372 LJ1597 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965401.1 1471283 D 257314 CDS NP_965402.1 42519472 2742758 complement(1471825..1472967) 1 NC_005362.1 putative UDP-N-acetylglucosamine 2-epimerase 1472967 2742758 LJ1598 Lactobacillus johnsonii NCC 533 putative UDP-N-acetylglucosamine 2-epimerase NP_965402.1 1471825 R 257314 CDS NP_965403.1 42519473 2743007 1473424..1474701 1 NC_005362.1 transposase 1474701 2743007 LJ1599 Lactobacillus johnsonii NCC 533 transposase NP_965403.1 1473424 D 257314 CDS NP_965404.1 42519474 2743080 complement(1474757..1476325) 1 NC_005362.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 1476325 prfC 2743080 prfC Lactobacillus johnsonii NCC 533 peptide chain release factor 3 NP_965404.1 1474757 R 257314 CDS NP_965405.1 42519475 2742987 complement(1476325..1477191) 1 NC_005362.1 contains CBS domain; hypothetical protein 1477191 2742987 LJ1601 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965405.1 1476325 R 257314 CDS NP_965406.1 42519476 2742806 1477307..1477768 1 NC_005362.1 hypothetical protein 1477768 2742806 LJ1602 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965406.1 1477307 D 257314 CDS NP_965407.1 42519477 2743570 complement(1477769..1478266) 1 NC_005362.1 hypothetical protein 1478266 2743570 LJ1603 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965407.1 1477769 R 257314 CDS NP_965408.1 42519478 2742730 complement(1478238..1478828) 1 NC_005362.1 hypothetical protein 1478828 2742730 LJ1604 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965408.1 1478238 R 257314 CDS NP_965409.1 42519479 2742198 complement(1478865..1479680) 1 NC_005362.1 contains recX domain; binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX 1479680 recX 2742198 recX Lactobacillus johnsonii NCC 533 recombination regulator RecX NP_965409.1 1478865 R 257314 CDS NP_965410.1 42519480 2743228 1479809..1481188 1 NC_005362.1 contains TRAM domain; hypothetical protein 1481188 2743228 LJ1606 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965410.1 1479809 D 257314 CDS NP_965411.1 42519481 2742174 complement(1481498..1482661) 1 NC_005362.1 hydroxymethylglutaryl-CoA synthase 1482661 2742174 LJ1607 Lactobacillus johnsonii NCC 533 hydroxymethylglutaryl-CoA synthase NP_965411.1 1481498 R 257314 CDS NP_965412.1 42519482 2742117 complement(1482663..1483898) 1 NC_005362.1 hydroxymethylglutaryl-CoA reductase 1483898 2742117 LJ1608 Lactobacillus johnsonii NCC 533 hydroxymethylglutaryl-CoA reductase NP_965412.1 1482663 R 257314 CDS NP_965413.1 42519483 2742088 complement(1483876..1485042) 1 NC_005362.1 acetyl-CoA acetyltransferase 1485042 2742088 LJ1609 Lactobacillus johnsonii NCC 533 acetyl-CoA acetyltransferase NP_965413.1 1483876 R 257314 CDS NP_965414.1 42519484 2742226 complement(1485166..1486110) 1 NC_005362.1 contains alpha/beta hydrolases domain; hypothetical protein 1486110 2742226 LJ1610 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965414.1 1485166 R 257314 CDS NP_965415.1 42519485 2742220 1486185..1486481 1 NC_005362.1 hypothetical protein 1486481 2742220 LJ1611 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965415.1 1486185 D 257314 CDS NP_965416.1 42519486 2742230 complement(1486530..1487342) 1 NC_005362.1 contains predicted hydrolases of the HAD superfamily domain; hypothetical protein 1487342 2742230 LJ1612 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965416.1 1486530 R 257314 CDS NP_965417.1 42519487 2742231 complement(1487356..1488525) 1 NC_005362.1 major facilitator superfamily permease 1488525 2742231 LJ1613 Lactobacillus johnsonii NCC 533 major facilitator superfamily permease NP_965417.1 1487356 R 257314 CDS NP_965418.1 42519488 2743022 complement(1488633..1489970) 1 NC_005362.1 glutamine synthetase 1489970 2743022 LJ1614 Lactobacillus johnsonii NCC 533 glutamine synthetase NP_965418.1 1488633 R 257314 CDS NP_965419.1 42519489 2742761 complement(1490175..1491095) 1 NC_005362.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 1491095 miaA 2742761 miaA Lactobacillus johnsonii NCC 533 tRNA delta(2)-isopentenylpyrophosphate transferase NP_965419.1 1490175 R 257314 CDS NP_965420.1 42519490 2742587 1491236..1491415 1 NC_005362.1 hypothetical protein 1491415 2742587 LJ1615b Lactobacillus johnsonii NCC 533 hypothetical protein NP_965420.1 1491236 D 257314 CDS NP_965421.1 42519491 2743000 complement(1491463..1491861) 1 NC_005362.1 contains rhodanese-like domain; hypothetical protein 1491861 2743000 LJ1616 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965421.1 1491463 R 257314 CDS NP_965422.1 42519492 2742577 complement(1491897..1492127) 1 NC_005362.1 hypothetical protein 1492127 2742577 LJ1617 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965422.1 1491897 R 257314 CDS NP_965423.1 42519493 2742668 complement(1492130..1492816) 1 NC_005362.1 contains rhomboid family domain; hypothetical protein 1492816 2742668 LJ1618 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965423.1 1492130 R 257314 CDS NP_965424.1 42519494 2743168 complement(1492832..1493389) 1 NC_005362.1 contains 5-formyltetrahydrofolate cyclo-ligase domain; hypothetical protein 1493389 2743168 LJ1619 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965424.1 1492832 R 257314 CDS NP_965425.1 42519495 2743410 complement(1493444..1493593) 1 NC_005362.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 1493593 rpmG 2743410 rpmG Lactobacillus johnsonii NCC 533 50S ribosomal protein L33 NP_965425.1 1493444 R 257314 CDS NP_965426.1 42519496 2743686 complement(1493666..1495765) 1 NC_005362.1 penicillin-binding protein 2B 1495765 2743686 LJ1620 Lactobacillus johnsonii NCC 533 penicillin-binding protein 2B NP_965426.1 1493666 R 257314 CDS NP_965427.1 42519497 2742972 1495881..1498457 1 NC_005362.1 hypothetical protein 1498457 2742972 LJ1621 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965427.1 1495881 D 257314 CDS NP_965428.1 42519498 2742872 complement(1498508..1498990) 1 NC_005362.1 transcription elongation factor GreA 1498990 2742872 LJ1622 Lactobacillus johnsonii NCC 533 transcription elongation factor GreA NP_965428.1 1498508 R 257314 CDS NP_965429.1 42519499 2742881 complement(1499071..1500165) 1 NC_005362.1 contains DUF175 domain; hypothetical protein 1500165 2742881 LJ1623 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965429.1 1499071 R 257314 CDS NP_965430.1 42519500 2742865 complement(1500229..1502643) 1 NC_005362.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 1502643 pheT 2742865 pheT Lactobacillus johnsonii NCC 533 phenylalanyl-tRNA synthetase subunit beta NP_965430.1 1500229 R 257314 CDS NP_965431.1 42519501 2741912 complement(1502643..1503692) 1 NC_005362.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 1503692 pheS 2741912 pheS Lactobacillus johnsonii NCC 533 phenylalanyl-tRNA synthetase subunit alpha NP_965431.1 1502643 R 257314 CDS NP_965432.1 42519502 2742871 complement(1503982..1504338) 1 NC_005362.1 contains DUF24 domain; hypothetical protein 1504338 2742871 LJ1626 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965432.1 1503982 R 257314 CDS NP_965433.1 42519503 2742349 complement(1504426..1505187) 1 NC_005362.1 contains SpoU rRNA methylase domain; hypothetical protein 1505187 2742349 LJ1627 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965433.1 1504426 R 257314 CDS NP_965434.1 42519504 2742352 1505285..1505560 1 NC_005362.1 putative acylphosphatase 1505560 2742352 LJ1628 Lactobacillus johnsonii NCC 533 putative acylphosphatase NP_965434.1 1505285 D 257314 CDS NP_965435.1 42519505 2742876 1505624..1506607 1 NC_005362.1 hypothetical protein 1506607 2742876 LJ1629 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965435.1 1505624 D 257314 CDS NP_965436.1 42519506 2741920 complement(1506647..1508179) 1 NC_005362.1 two-component system histidine kinase 1508179 2741920 LJ1630 Lactobacillus johnsonii NCC 533 two-component system histidine kinase NP_965436.1 1506647 R 257314 CDS NP_965437.1 42519507 2742359 complement(1508151..1508879) 1 NC_005362.1 two-component regulatory system response regulator 1508879 2742359 LJ1631 Lactobacillus johnsonii NCC 533 two-component regulatory system response regulator NP_965437.1 1508151 R 257314 CDS NP_965438.1 42519508 2743208 complement(1508966..1509511) 1 NC_005362.1 hypothetical protein 1509511 2743208 LJ1632 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965438.1 1508966 R 257314 CDS NP_965439.1 42519509 2743589 complement(1509511..1510668) 1 NC_005362.1 contains uncharacterized ACR domain; hypothetical protein 1510668 2743589 LJ1633 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965439.1 1509511 R 257314 CDS NP_965440.1 42519510 2743500 complement(1510679..1511044) 1 NC_005362.1 contains DUF143 domain; hypothetical protein 1511044 2743500 LJ1634 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965440.1 1510679 R 257314 CDS NP_965441.1 42519511 2742418 complement(1511049..1511645) 1 NC_005362.1 contains HD domain; hypothetical protein 1511645 2742418 LJ1635 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965441.1 1511049 R 257314 CDS NP_965442.1 42519512 2742559 complement(1511638..1512264) 1 NC_005362.1 nicotinate-nucleotide adenylyltransferase 1512264 2742559 LJ1636 Lactobacillus johnsonii NCC 533 nicotinate-nucleotide adenylyltransferase NP_965442.1 1511638 R 257314 CDS NP_965443.1 42519513 2742709 complement(1512264..1513373) 1 NC_005362.1 contains GTPase of unknown function domain; in Bacillus subtilis this enzyme appears to be involved in 30S ribosomal RNA subunit biogenesis; GTP-binding protein YqeH 1513373 2742709 LJ1637 Lactobacillus johnsonii NCC 533 GTP-binding protein YqeH NP_965443.1 1512264 R 257314 CDS NP_965444.1 42519514 2742739 complement(1513386..1513889) 1 NC_005362.1 contains HAD superfamily domain; hypothetical protein 1513889 2742739 LJ1638 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965444.1 1513386 R 257314 CDS NP_965445.1 42519515 2743030 1514051..1515052 1 NC_005362.1 contains adenosine/AMP deaminase domain; catalyzes the formation of inosine from adenosine; adenosine deaminase 1515052 2743030 LJ1639 Lactobacillus johnsonii NCC 533 adenosine deaminase NP_965445.1 1514051 D 257314 CDS NP_965446.1 42519516 2742216 complement(1515100..1515456) 1 NC_005362.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 1515456 rplT 2742216 rplT Lactobacillus johnsonii NCC 533 50S ribosomal protein L20 NP_965446.1 1515100 R 257314 CDS NP_965447.1 42519517 2743604 complement(1515489..1515689) 1 NC_005362.1 50S ribosomal protein L35 1515689 rpmI 2743604 rpmI Lactobacillus johnsonii NCC 533 50S ribosomal protein L35 NP_965447.1 1515489 R 257314 CDS NP_965448.1 42519518 2743749 complement(1515708..1516226) 1 NC_005362.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 1516226 infC 2743749 infC Lactobacillus johnsonii NCC 533 translation initiation factor IF-3 NP_965448.1 1515708 R 257314 CDS NP_965449.1 42519519 2743742 complement(1516441..1517682) 1 NC_005362.1 hypothetical protein 1517682 2743742 LJ1642 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965449.1 1516441 R 257314 CDS NP_965450.1 42519520 2743368 complement(1517890..1518321) 1 NC_005362.1 hypothetical protein 1518321 2743368 LJ1643 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965450.1 1517890 R 257314 CDS NP_965451.1 42519521 2743343 complement(1518318..1518752) 1 NC_005362.1 hypothetical protein 1518752 2743343 LJ1644 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965451.1 1518318 R 257314 CDS NP_965452.1 42519522 2743378 complement(1518923..1520854) 1 NC_005362.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 1520854 thrS 2743378 thrS Lactobacillus johnsonii NCC 533 threonyl-tRNA synthetase NP_965452.1 1518923 R 257314 CDS NP_965453.1 42519523 2742909 complement(1521136..1522035) 1 NC_005362.1 Primosomal protein that may act to load helicase DnaC during DNA replication; primosomal protein DnaI 1522035 2742909 LJ1646 Lactobacillus johnsonii NCC 533 primosomal protein DnaI NP_965453.1 1521136 R 257314 CDS NP_965454.1 42519524 2742533 complement(1522050..1523390) 1 NC_005362.1 similar to DnaB; hypothetical protein 1523390 2742533 LJ1647 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965454.1 1522050 R 257314 CDS NP_965455.1 42519525 2743331 complement(1523398..1523862) 1 NC_005362.1 contains DUF193 domain; transcriptional regulator NrdR 1523862 nrdR 2743331 nrdR Lactobacillus johnsonii NCC 533 transcriptional regulator NrdR NP_965455.1 1523398 R 257314 CDS NP_965456.1 42519526 2742093 complement(1523867..1524463) 1 NC_005362.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 1524463 coaE 2742093 coaE Lactobacillus johnsonii NCC 533 dephospho-CoA kinase NP_965456.1 1523867 R 257314 CDS NP_965457.1 42519527 2742963 complement(1524460..1525290) 1 NC_005362.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 1525290 2742963 LJ1650 Lactobacillus johnsonii NCC 533 formamidopyrimidine-DNA glycosylase NP_965457.1 1524460 R 257314 CDS NP_965458.1 42519528 2743373 complement(1525310..1527970) 1 NC_005362.1 DNA polymerase I 1527970 2743373 LJ1651 Lactobacillus johnsonii NCC 533 DNA polymerase I NP_965458.1 1525310 R 257314 CDS NP_965459.1 42519529 2742190 complement(1528177..1528485) 1 NC_005362.1 hypothetical protein 1528485 2742190 LJ1652 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965459.1 1528177 R 257314 CDS NP_965460.1 42519530 2742160 complement(1528511..1529344) 1 NC_005362.1 phosphoenolpyruvate-dependent sugar phosphotransferase system EIID, mannose specific 1529344 2742160 LJ1653 Lactobacillus johnsonii NCC 533 phosphoenolpyruvate-dependent sugar phosphotransferase system EIID, mannose specific NP_965460.1 1528511 R 257314 CDS NP_965461.1 42519531 2742046 complement(1529347..1530204) 1 NC_005362.1 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, mannose specific 1530204 2742046 LJ1654 Lactobacillus johnsonii NCC 533 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, mannose specific NP_965461.1 1529347 R 257314 CDS NP_965462.1 42519532 2742911 complement(1530242..1530745) 1 NC_005362.1 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIB, mannose specific 1530745 2742911 LJ1655 Lactobacillus johnsonii NCC 533 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIB, mannose specific NP_965462.1 1530242 R 257314 CDS NP_965463.1 42519533 2743251 complement(1530758..1531201) 1 NC_005362.1 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA, mannose specific 1531201 2743251 LJ1656 Lactobacillus johnsonii NCC 533 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA, mannose specific NP_965463.1 1530758 R 257314 CDS NP_965464.1 42519534 2743225 1531395..1532357 1 NC_005362.1 contains periplasmic sugar-binding domain; hypothetical protein 1532357 2743225 LJ1657 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965464.1 1531395 D 257314 CDS NP_965465.1 42519535 2742704 1532357..1533661 1 NC_005362.1 two-component system histidine kinase 1533661 2742704 LJ1658 Lactobacillus johnsonii NCC 533 two-component system histidine kinase NP_965465.1 1532357 D 257314 CDS NP_965466.1 42519536 2742745 1533663..1534337 1 NC_005362.1 two-component system response regulator 1534337 2742745 LJ1659 Lactobacillus johnsonii NCC 533 two-component system response regulator NP_965466.1 1533663 D 257314 CDS NP_965467.1 42519537 2742183 1534315..1535595 1 NC_005362.1 contains periplasmic sugar-binding domain; hypothetical protein 1535595 2742183 LJ1660 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965467.1 1534315 D 257314 CDS NP_965468.1 42519538 2742155 1535709..1536422 1 NC_005362.1 deoxyribose-phosphate aldolase 1536422 2742155 LJ1661 Lactobacillus johnsonii NCC 533 deoxyribose-phosphate aldolase NP_965468.1 1535709 D 257314 CDS NP_965469.1 42519539 2742595 1536423..1537136 1 NC_005362.1 contains bacterial regulatory gntR domain; hypothetical protein 1537136 2742595 LJ1662 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965469.1 1536423 D 257314 CDS NP_965470.1 42519540 2742614 complement(1537210..1538523) 1 NC_005362.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 1538523 murC 2742614 murC Lactobacillus johnsonii NCC 533 UDP-N-acetylmuramate--L-alanine ligase NP_965470.1 1537210 R 257314 CDS NP_965471.1 42519541 2742801 complement(1539182..1539829) 1 NC_005362.1 phenylalanyl-tRNA synthetase beta chain 1539829 2742801 LJ1664 Lactobacillus johnsonii NCC 533 phenylalanyl-tRNA synthetase beta chain NP_965471.1 1539182 R 257314 CDS NP_965472.1 42519542 2743607 complement(1539854..1540174) 1 NC_005362.1 thioredoxin 1540174 2743607 LJ1665 Lactobacillus johnsonii NCC 533 thioredoxin NP_965472.1 1539854 R 257314 CDS NP_965473.1 42519543 2742939 1540304..1540687 1 NC_005362.1 hypothetical protein 1540687 2742939 LJ1666 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965473.1 1540304 D 257314 CDS NP_965474.1 42519544 2742184 complement(1540760..1541416) 1 NC_005362.1 contains putative methyltransferase domain; tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 1541416 trmB 2742184 trmB Lactobacillus johnsonii NCC 533 tRNA (guanine-N(7)-)-methyltransferase NP_965474.1 1540760 R 257314 CDS NP_965475.1 42519545 2743261 complement(1541428..1542639) 1 NC_005362.1 hypothetical protein 1542639 2743261 LJ1668 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965475.1 1541428 R 257314 CDS NP_965476.1 42519546 2743114 complement(1542632..1543378) 1 NC_005362.1 ABC transporter ATPase component 1543378 2743114 LJ1669 Lactobacillus johnsonii NCC 533 ABC transporter ATPase component NP_965476.1 1542632 R 257314 CDS NP_965477.1 42519547 2743278 1543474..1543908 1 NC_005362.1 hit protein 1543908 2743278 LJ1670 Lactobacillus johnsonii NCC 533 hit protein NP_965477.1 1543474 D 257314 CDS NP_965478.1 42519548 2742800 1543991..1544482 1 NC_005362.1 hypothetical protein 1544482 2742800 LJ1671 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965478.1 1543991 D 257314 CDS NP_965479.1 42519549 2743028 1544482..1544832 1 NC_005362.1 hypothetical protein 1544832 2743028 LJ1672 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965479.1 1544482 D 257314 CDS NP_965480.1 42519550 2742517 1544954..1545850 1 NC_005362.1 cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein; peptidylprolyl isomerase 1545850 prsA 2742517 prsA Lactobacillus johnsonii NCC 533 peptidylprolyl isomerase NP_965480.1 1544954 D 257314 CDS NP_965481.1 42519551 2741991 complement(1545908..1546885) 1 NC_005362.1 hypothetical protein 1546885 2741991 LJ1674 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965481.1 1545908 R 257314 CDS NP_965482.1 42519552 2742078 complement(1546885..1549323) 1 NC_005362.1 contains ATPase involved in DNA repair domain; hypothetical protein 1549323 2742078 LJ1675 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965482.1 1546885 R 257314 CDS NP_965483.1 42519553 2742073 complement(1549304..1550527) 1 NC_005362.1 contains DNA repair exonuclease domain; hypothetical protein 1550527 2742073 LJ1676 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965483.1 1549304 R 257314 CDS NP_965484.1 42519554 2742799 complement(1550533..1550886) 1 NC_005362.1 hypothetical protein 1550886 2742799 LJ1677 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965484.1 1550533 R 257314 CDS NP_965485.1 42519555 2742484 complement(1550906..1552963) 1 NC_005362.1 penicillin-binding protein 1F 1552963 2742484 LJ1678 Lactobacillus johnsonii NCC 533 penicillin-binding protein 1F NP_965485.1 1550906 R 257314 CDS NP_965486.1 42519556 2743176 1553069..1553917 1 NC_005362.1 contains RNA pseudouridylate synthase domain; hypothetical protein 1553917 2743176 LJ1679 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965486.1 1553069 D 257314 CDS NP_965487.1 42519557 2743641 complement(1554179..1557883) 1 NC_005362.1 contains gram positive anchor domain and similarity to IgA proteases; hypothetical protein 1557883 2743641 LJ1680 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965487.1 1554179 R 257314 CDS NP_965488.1 42519558 2742880 complement(1558828..1559115) 1 NC_005362.1 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIB, galactitol specific 1559115 2742880 LJ1681 Lactobacillus johnsonii NCC 533 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIB, galactitol specific NP_965488.1 1558828 R 257314 CDS NP_965489.1 42519559 2742803 complement(1559143..1560492) 1 NC_005362.1 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, galactitol specific 1560492 2742803 LJ1682 Lactobacillus johnsonii NCC 533 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, galactitol specific NP_965489.1 1559143 R 257314 CDS NP_965490.1 42519560 2743424 complement(1560505..1560966) 1 NC_005362.1 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA, galactitol specific 1560966 2743424 LJ1683 Lactobacillus johnsonii NCC 533 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA, galactitol specific NP_965490.1 1560505 R 257314 CDS NP_965491.1 42519561 2742498 complement(1560956..1561381) 1 NC_005362.1 hypothetical protein 1561381 2742498 LJ1684 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965491.1 1560956 R 257314 CDS NP_965492.1 42519562 2741875 complement(1561353..1562852) 1 NC_005362.1 hypothetical protein 1562852 2741875 LJ1685 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965492.1 1561353 R 257314 CDS NP_965493.1 42519563 2742523 complement(1563028..1563582) 1 NC_005362.1 hypothetical protein 1563582 2742523 LJ1686 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965493.1 1563028 R 257314 CDS NP_965494.1 42519564 2741887 complement(1563606..1564457) 1 NC_005362.1 hypothetical protein 1564457 2741887 LJ1687 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965494.1 1563606 R 257314 CDS NP_965495.1 42519565 2743267 complement(1564542..1565327) 1 NC_005362.1 contains aminoglycoside phosphotransferase domain; hypothetical protein 1565327 2743267 LJ1688 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965495.1 1564542 R 257314 CDS NP_965496.1 42519566 2743262 complement(1565372..1566403) 1 NC_005362.1 contains penicillin binding protein domain; hypothetical protein 1566403 2743262 LJ1689 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965496.1 1565372 R 257314 CDS NP_965497.1 42519567 2742723 complement(1566825..1567055) 1 NC_005362.1 hypothetical protein 1567055 2742723 LJ1690 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965497.1 1566825 R 257314 CDS NP_965498.1 42519568 2742543 complement(1567057..1567506) 1 NC_005362.1 hypothetical protein 1567506 2742543 LJ1691 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965498.1 1567057 R 257314 CDS NP_965499.1 42519569 2742172 complement(1567493..1567738) 1 NC_005362.1 hypothetical protein 1567738 2742172 LJ1692 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965499.1 1567493 R 257314 CDS NP_965500.1 42519570 2742109 complement(1567820..1568464) 1 NC_005362.1 contains bacterial regulatory crp domain; hypothetical protein 1568464 2742109 LJ1693 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965500.1 1567820 R 257314 CDS NP_965501.1 42519571 2743737 complement(1568475..1568801) 1 NC_005362.1 hypothetical protein 1568801 2743737 LJ1694 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965501.1 1568475 R 257314 CDS NP_965502.1 42519572 2743660 complement(1569019..1569249) 1 NC_005362.1 contains heavy-metal-associated domain; hypothetical protein 1569249 2743660 LJ1695 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965502.1 1569019 R 257314 CDS NP_965503.1 42519573 2743619 complement(1569276..1571177) 1 NC_005362.1 cation-transporting ATPase 1571177 2743619 LJ1696 Lactobacillus johnsonii NCC 533 cation-transporting ATPase NP_965503.1 1569276 R 257314 CDS NP_965504.1 42519574 2743464 complement(1571401..1571985) 1 NC_005362.1 hypothetical protein 1571985 2743464 LJ1697 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965504.1 1571401 R 257314 CDS NP_965505.1 42519575 2743759 complement(1572152..1573504) 1 NC_005362.1 contains TRAM domain; hypothetical protein 1573504 2743759 LJ1698 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965505.1 1572152 R 257314 CDS NP_965506.1 42519576 2743735 complement(1573554..1574237) 1 NC_005362.1 major facilitator superfamily permease 1574237 2743735 LJ1699 Lactobacillus johnsonii NCC 533 major facilitator superfamily permease NP_965506.1 1573554 R 257314 CDS NP_965507.1 42519577 2743757 complement(1574230..1574934) 1 NC_005362.1 ABC transporter ATPase component 1574934 2743757 LJ1700 Lactobacillus johnsonii NCC 533 ABC transporter ATPase component NP_965507.1 1574230 R 257314 CDS NP_965508.1 42519578 2743751 1575294..1576670 1 NC_005362.1 Na+/H+ antiporter 1576670 2743751 LJ1701 Lactobacillus johnsonii NCC 533 Na+/H+ antiporter NP_965508.1 1575294 D 257314 CDS NP_965509.1 42519579 2743741 1576796..1577641 1 NC_005362.1 contains DUF62 domain; hypothetical protein 1577641 2743741 LJ1702 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965509.1 1576796 D 257314 CDS NP_965510.1 42519580 2742200 1577662..1578219 1 NC_005362.1 hypothetical protein 1578219 2742200 LJ1703 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965510.1 1577662 D 257314 CDS NP_965511.1 42519581 2742258 1578241..1579962 1 NC_005362.1 ABC transporter ATPase component 1579962 2742258 LJ1704 Lactobacillus johnsonii NCC 533 ABC transporter ATPase component NP_965511.1 1578241 D 257314 CDS NP_965512.1 42519582 2742159 1579955..1580785 1 NC_005362.1 ABC transporter permease component 1580785 2742159 LJ1705 Lactobacillus johnsonii NCC 533 ABC transporter permease component NP_965512.1 1579955 D 257314 CDS NP_965513.1 42519583 2743177 1580848..1581561 1 NC_005362.1 contains UPF0005 domain; hypothetical protein 1581561 2743177 LJ1706 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965513.1 1580848 D 257314 CDS NP_965514.1 42519584 2743269 complement(1581636..1583660) 1 NC_005362.1 contains glycosyl transferase family 8 domain; hypothetical protein 1583660 2743269 LJ1707 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965514.1 1581636 R 257314 CDS NP_965515.1 42519585 2742122 complement(1583660..1585666) 1 NC_005362.1 contains glycosyl transferase family 8 domain; hypothetical protein 1585666 2742122 LJ1708 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965515.1 1583660 R 257314 CDS NP_965516.1 42519586 2742910 complement(1585941..1587125) 1 NC_005362.1 hypothetical protein 1587125 2742910 LJ1709 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965516.1 1585941 R 257314 CDS NP_965517.1 42519587 2741975 complement(1587298..1587720) 1 NC_005362.1 hypothetical protein 1587720 2741975 LJ1710 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965517.1 1587298 R 257314 CDS NP_965518.1 42519588 2742999 complement(1587777..1596896) 1 NC_005362.1 contains gram positive anchor domain; hypothetical protein 1596896 2742999 LJ1711 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965518.1 1587777 R 257314 CDS NP_965519.1 42519589 2743245 complement(1597235..1598050) 1 NC_005362.1 contains predicted HAD hydrolase domain; hypothetical protein 1598050 2743245 LJ1714 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965519.1 1597235 R 257314 CDS NP_965520.1 42519590 2743363 complement(1598310..1599218) 1 NC_005362.1 contains diacylglycerol kinase catalytic domain; similar to YegS from E. coli; putative lipid kinase 1599218 2743363 LJ1715 Lactobacillus johnsonii NCC 533 putative lipid kinase NP_965520.1 1598310 R 257314 CDS NP_965521.1 42519591 2742319 complement(1599242..1600672) 1 NC_005362.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 1600672 gatB 2742319 gatB Lactobacillus johnsonii NCC 533 aspartyl/glutamyl-tRNA amidotransferase subunit B NP_965521.1 1599242 R 257314 CDS NP_965522.1 42519592 2743561 complement(1600676..1602115) 1 NC_005362.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 1602115 gatA 2743561 gatA Lactobacillus johnsonii NCC 533 aspartyl/glutamyl-tRNA amidotransferase subunit A NP_965522.1 1600676 R 257314 CDS NP_965523.1 42519593 2742639 complement(1602115..1602417) 1 NC_005362.1 glutamyl-tRNA(Gln) amidotransferase subunit C 1602417 2742639 LJ1718 Lactobacillus johnsonii NCC 533 glutamyl-tRNA(Gln) amidotransferase subunit C NP_965523.1 1602115 R 257314 CDS NP_965524.1 42519594 2743364 complement(1602428..1603567) 1 NC_005362.1 hypothetical protein 1603567 2743364 LJ1719 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965524.1 1602428 R 257314 CDS NP_965525.1 42519595 2743460 complement(1603589..1605595) 1 NC_005362.1 NAD-dependent DNA ligase 1605595 2743460 LJ1720 Lactobacillus johnsonii NCC 533 NAD-dependent DNA ligase NP_965525.1 1603589 R 257314 CDS NP_965526.1 42519596 2742280 complement(1605634..1607880) 1 NC_005362.1 ATP-dependent DNA helicase PcrA 1607880 2742280 LJ1721 Lactobacillus johnsonii NCC 533 ATP-dependent DNA helicase PcrA NP_965526.1 1605634 R 257314 CDS NP_965527.1 42519597 2743527 complement(1607978..1608604) 1 NC_005362.1 contains mannosyl-glycoprotein endo-beta-N-acetylglucosamidase domain; hypothetical protein 1608604 2743527 LJ1722 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965527.1 1607978 R 257314 CDS NP_965528.1 42519598 2742286 complement(1608606..1609223) 1 NC_005362.1 hypothetical protein 1609223 2742286 LJ1723 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965528.1 1608606 R 257314 CDS NP_965529.1 42519599 2742407 complement(1609442..1609900) 1 NC_005362.1 hypothetical protein 1609900 2742407 LJ1724 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965529.1 1609442 R 257314 CDS NP_965530.1 42519600 2742297 complement(1609900..1610601) 1 NC_005362.1 hypothetical protein 1610601 2742297 LJ1725 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965530.1 1609900 R 257314 CDS NP_965531.1 42519601 2742222 1610727..1611776 1 NC_005362.1 transposase 1611776 2742222 LJ1726 Lactobacillus johnsonii NCC 533 transposase NP_965531.1 1610727 D 257314 CDS NP_965532.1 42519602 2743128 complement(1611773..1613242) 1 NC_005362.1 contains polysaccharide biosynthesis transport domain; hypothetical protein 1613242 2743128 LJ1727 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965532.1 1611773 R 257314 CDS NP_965533.1 42519603 2742337 complement(1613254..1614402) 1 NC_005362.1 contains putative glycosyl/glycerophosphate transferase domain involved in teichoic acid biosynthesis; hypothetical protein 1614402 2742337 LJ1728 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965533.1 1613254 R 257314 CDS NP_965534.1 42519604 2742249 1614627..1615433 1 NC_005362.1 contains transcriptional regulator helix-turn-helix domain; hypothetical protein 1615433 2742249 LJ1729 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965534.1 1614627 D 257314 CDS NP_965535.1 42519605 2742442 1615535..1617103 1 NC_005362.1 ABC transporter ATPase and permease components 1617103 2742442 LJ1730 Lactobacillus johnsonii NCC 533 ABC transporter ATPase and permease components NP_965535.1 1615535 D 257314 CDS NP_965536.1 42519606 2742571 complement(1617192..1619885) 1 NC_005362.1 cation-transporting ATPase 1619885 2742571 LJ1731 Lactobacillus johnsonii NCC 533 cation-transporting ATPase NP_965536.1 1617192 R 257314 CDS NP_965537.1 42519607 2742266 complement(1620091..1622088) 1 NC_005362.1 contains AAA+ class ATPase domain; hypothetical protein 1622088 2742266 LJ1732 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965537.1 1620091 R 257314 CDS NP_965538.1 42519608 2742378 complement(1622113..1622946) 1 NC_005362.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 1622946 nadE 2742378 nadE Lactobacillus johnsonii NCC 533 NAD synthetase NP_965538.1 1622113 R 257314 CDS NP_965539.1 42519609 2742666 complement(1622948..1624420) 1 NC_005362.1 contains nicotinic acid phosphoribosyltransferase domain; catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 1624420 2742666 LJ1734 Lactobacillus johnsonii NCC 533 nicotinate phosphoribosyltransferase NP_965539.1 1622948 R 257314 CDS NP_965540.1 42519610 2742574 complement(1624530..1626524) 1 NC_005362.1 contains glycosyl transferase group 2 domain; hypothetical protein 1626524 2742574 LJ1735 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965540.1 1624530 R 257314 CDS NP_965541.1 42519611 2742649 complement(1626508..1627623) 1 NC_005362.1 contains glycosyl transferase group 1 domain; hypothetical protein 1627623 2742649 LJ1736 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965541.1 1626508 R 257314 CDS NP_965542.1 42519612 2742171 complement(1627628..1628368) 1 NC_005362.1 teichoic acid biosynthesis protein A 1628368 2742171 LJ1737 Lactobacillus johnsonii NCC 533 teichoic acid biosynthesis protein A NP_965542.1 1627628 R 257314 CDS NP_965543.1 42519613 2742594 1628512..1628898 1 NC_005362.1 glycerol-3-phosphate cytidylyltransferase 1628898 2742594 LJ1738 Lactobacillus johnsonii NCC 533 glycerol-3-phosphate cytidylyltransferase NP_965543.1 1628512 D 257314 CDS NP_965544.1 42519614 2742176 complement(1628950..1629651) 1 NC_005362.1 contains bacterial regulatory gntR domain; hypothetical protein 1629651 2742176 LJ1739 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965544.1 1628950 R 257314 CDS NP_965545.1 42519615 2742612 complement(1629706..1630827) 1 NC_005362.1 hypothetical protein 1630827 2742612 LJ1740 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965545.1 1629706 R 257314 CDS NP_965546.1 42519616 2742585 1630920..1631222 1 NC_005362.1 contains rhodanese-related sulfurtransferase domain; hypothetical protein 1631222 2742585 LJ1741 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965546.1 1630920 D 257314 CDS NP_965547.1 42519617 2742490 complement(1631588..1632496) 1 NC_005362.1 L-2-hydroxyisocaproate dehydrogenase 1632496 2742490 LJ1742 Lactobacillus johnsonii NCC 533 L-2-hydroxyisocaproate dehydrogenase NP_965547.1 1631588 R 257314 CDS NP_965548.1 42519618 2742951 complement(1632581..1632829) 1 NC_005362.1 hypothetical protein 1632829 2742951 LJ1743 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965548.1 1632581 R 257314 CDS NP_965549.1 42519619 2742301 complement(1632954..1633274) 1 NC_005362.1 hypothetical protein 1633274 2742301 LJ1744 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965549.1 1632954 R 257314 CDS NP_965550.1 42519620 2742829 complement(1633596..1634576) 1 NC_005362.1 surface protein, aggregation promoting factor 1634576 2742829 LJ1745 Lactobacillus johnsonii NCC 533 surface protein, aggregation promoting factor NP_965550.1 1633596 R 257314 CDS NP_965551.1 42519621 2742955 complement(1634938..1635741) 1 NC_005362.1 surface protein, aggregation promoting factor 1635741 2742955 LJ1746 Lactobacillus johnsonii NCC 533 surface protein, aggregation promoting factor NP_965551.1 1634938 R 257314 CDS NP_965552.1 42519622 2742900 complement(1635958..1636677) 1 NC_005362.1 hypothetical protein 1636677 2742900 LJ1747 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965552.1 1635958 R 257314 CDS NP_965553.1 42519623 2743522 1636821..1637225 1 NC_005362.1 phosphate-starvation-inducible protein PsiE 1637225 2743522 LJ1747b Lactobacillus johnsonii NCC 533 phosphate-starvation-inducible protein PsiE NP_965553.1 1636821 D 257314 CDS NP_965554.1 42519624 2743662 complement(1637220..1637741) 1 NC_005362.1 contains acetyltransferase (GNAT) domain; hypothetical protein 1637741 2743662 LJ1748 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965554.1 1637220 R 257314 CDS NP_965555.1 42519625 2743724 complement(1637990..1639192) 1 NC_005362.1 contains phage integrase domain; hypothetical protein 1639192 2743724 LJ1749 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965555.1 1637990 R 257314 CDS NP_965556.1 42519626 2742904 complement(1639454..1639840) 1 NC_005362.1 hypothetical protein 1639840 2742904 LJ1750 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965556.1 1639454 R 257314 CDS NP_965557.1 42519627 2743046 complement(1639830..1640636) 1 NC_005362.1 hypothetical protein 1640636 2743046 LJ1751 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965557.1 1639830 R 257314 CDS NP_965558.1 42519628 2742780 complement(1640744..1641538) 1 NC_005362.1 contains FtsK/SpoIIIE domain; hypothetical protein 1641538 2742780 LJ1752 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965558.1 1640744 R 257314 CDS NP_965559.1 42519629 2742932 complement(1641528..1642097) 1 NC_005362.1 hypothetical protein 1642097 2742932 LJ1753 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965559.1 1641528 R 257314 CDS NP_965560.1 42519630 2743059 complement(1642108..1642554) 1 NC_005362.1 hypothetical protein 1642554 2743059 LJ1754 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965560.1 1642108 R 257314 CDS NP_965561.1 42519631 2742977 1642760..1643560 1 NC_005362.1 contains transcriptional regulator helix-turn-helix domain; hypothetical protein 1643560 2742977 LJ1755 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965561.1 1642760 D 257314 CDS NP_965562.1 42519632 2743029 complement(1643939..1644796) 1 NC_005362.1 reductase 1644796 2743029 LJ1756 Lactobacillus johnsonii NCC 533 reductase NP_965562.1 1643939 R 257314 CDS NP_965563.1 42519633 2743086 complement(1644878..1646209) 1 NC_005362.1 pyridine nucleotide-disulfide oxidoreductase 1646209 2743086 LJ1757 Lactobacillus johnsonii NCC 533 pyridine nucleotide-disulfide oxidoreductase NP_965563.1 1644878 R 257314 CDS NP_965564.1 42519634 2743207 1646343..1647104 1 NC_005362.1 hypothetical protein 1647104 2743207 LJ1758 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965564.1 1646343 D 257314 CDS NP_965565.1 42519635 2743049 1647164..1648156 1 NC_005362.1 UDP-glucose 4-epimerase 1648156 2743049 LJ1759 Lactobacillus johnsonii NCC 533 UDP-glucose 4-epimerase NP_965565.1 1647164 D 257314 CDS NP_965566.1 42519636 2743155 complement(1648199..1650421) 1 NC_005362.1 contains DEAD/DEAH box helicase domain; hypothetical protein 1650421 2743155 LJ1760 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965566.1 1648199 R 257314 CDS NP_965567.1 42519637 2743199 complement(1650429..1651763) 1 NC_005362.1 hypothetical protein 1651763 2743199 LJ1761 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965567.1 1650429 R 257314 CDS NP_965568.1 42519638 2743256 complement(1651767..1653647) 1 NC_005362.1 hypothetical protein 1653647 2743256 LJ1762 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965568.1 1651767 R 257314 CDS NP_965569.1 42519639 2743293 complement(1653760..1654008) 1 NC_005362.1 hypothetical protein 1654008 2743293 LJ1763 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965569.1 1653760 R 257314 CDS NP_965570.1 42519640 2743129 complement(1653963..1654445) 1 NC_005362.1 hypothetical protein 1654445 2743129 LJ1764 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965570.1 1653963 R 257314 CDS NP_965571.1 42519641 2741856 1654662..1655087 1 NC_005362.1 hypothetical protein 1655087 2741856 LJ1765 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965571.1 1654662 D 257314 CDS NP_965572.1 42519642 2743187 complement(1655304..1657913) 1 NC_005362.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase 1657913 2743187 LJ1766 Lactobacillus johnsonii NCC 533 bifunctional acetaldehyde-CoA/alcohol dehydrogenase NP_965572.1 1655304 R 257314 CDS NP_965573.1 42519643 2743144 1658228..1659601 1 NC_005362.1 contains amino acid permease domain; hypothetical protein 1659601 2743144 LJ1767 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965573.1 1658228 D 257314 CDS NP_965574.1 42519644 2741861 complement(1671938..1673929) 1 NC_005362.1 contains alkaline phosphatase superfamily domain; hypothetical protein 1673929 2741861 LJ1768 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965574.1 1671938 R 257314 CDS NP_965575.1 42519645 2743247 complement(1674014..1675030) 1 NC_005362.1 hypothetical protein 1675030 2743247 LJ1770 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965575.1 1674014 R 257314 CDS NP_965576.1 42519646 2742719 complement(1675030..1676073) 1 NC_005362.1 contains glycosyl transferases group 1 domain; hypothetical protein 1676073 2742719 LJ1771 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965576.1 1675030 R 257314 CDS NP_965577.1 42519647 2742671 complement(1676066..1677232) 1 NC_005362.1 contains glycosyl transferases group 1 domain; hypothetical protein 1677232 2742671 LJ1772 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965577.1 1676066 R 257314 CDS NP_965578.1 42519648 2742424 1678542..1678901 1 NC_005362.1 hypothetical protein 1678901 2742424 LJ1773 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965578.1 1678542 D 257314 CDS NP_965579.1 42519649 2743476 complement(1686282..1687592) 1 NC_005362.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 1687592 2743476 LJ0676 Lactobacillus johnsonii NCC 533 seryl-tRNA synthetase NP_965579.1 1686282 R 257314 CDS NP_965580.1 42519650 2742510 complement(1687808..1688362) 1 NC_005362.1 contains acetyltransferase (GNAT) domain; hypothetical protein 1688362 2742510 LJ0675 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965580.1 1687808 R 257314 CDS NP_965581.1 42519651 2743497 complement(1688362..1688961) 1 NC_005362.1 contains uncharacterized ACR domain; hypothetical protein 1688961 2743497 LJ0674 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965581.1 1688362 R 257314 CDS NP_965582.1 42519652 2742338 1689127..1689933 1 NC_005362.1 contains acetyl esterase domain; hypothetical protein 1689933 2742338 LJ0673 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965582.1 1689127 D 257314 CDS NP_965583.1 42519653 2742325 1689920..1690762 1 NC_005362.1 contains transcriptional regulator helix-turn-helix domain; hypothetical protein 1690762 2742325 LJ0672 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965583.1 1689920 D 257314 CDS NP_965584.1 42519654 2742309 1690865..1692238 1 NC_005362.1 succinate-semialdehyde dehydrogenase 1692238 2742309 LJ0671 Lactobacillus johnsonii NCC 533 succinate-semialdehyde dehydrogenase NP_965584.1 1690865 D 257314 CDS NP_965585.1 42519655 2741923 complement(1692287..1693297) 1 NC_005362.1 hypothetical protein 1693297 2741923 LJ0670 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965585.1 1692287 R 257314 CDS NP_965586.1 42519656 2741905 complement(1693372..1694055) 1 NC_005362.1 contains uncharacterized ACR domain; hypothetical protein 1694055 2741905 LJ0669 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965586.1 1693372 R 257314 CDS NP_965587.1 42519657 2742603 1694203..1695006 1 NC_005362.1 contains haloacid dehalogenase-like hydrolase domain; hypothetical protein 1695006 2742603 LJ0668 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965587.1 1694203 D 257314 CDS NP_965588.1 42519658 2742062 complement(1695079..1698735) 1 NC_005362.1 hypothetical protein 1698735 2742062 LJ0667 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965588.1 1695079 R 257314 CDS NP_965589.1 42519659 2741989 complement(1698755..1699318) 1 NC_005362.1 contains bacterial regulatory protein tetR domain; hypothetical protein 1699318 2741989 LJ0666 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965589.1 1698755 R 257314 CDS NP_965590.1 42519660 2742003 complement(1699445..1700389) 1 NC_005362.1 hypothetical protein 1700389 2742003 LJ0665 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965590.1 1699445 R 257314 CDS NP_965591.1 42519661 2742102 1700581..1701504 1 NC_005362.1 contains bacterial regulatory protein ROK domain; hypothetical protein 1701504 2742102 LJ0664 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965591.1 1700581 D 257314 CDS NP_965592.1 42519662 2743147 complement(1701554..1701994) 1 NC_005362.1 contains acetyltransferase (GNAT) domain; hypothetical protein 1701994 2743147 LJ0663 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965592.1 1701554 R 257314 CDS NP_965593.1 42519663 2743093 complement(1701994..1702518) 1 NC_005362.1 protease synthase and sporulation negative regulatory protein PAI 1 1702518 2743093 LJ0662 Lactobacillus johnsonii NCC 533 protease synthase and sporulation negative regulatory protein PAI 1 NP_965593.1 1701994 R 257314 CDS NP_965594.1 42519664 2743248 complement(1702520..1702978) 1 NC_005362.1 contains bacterial regulatory protein marR domain; hypothetical protein 1702978 2743248 LJ0661 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965594.1 1702520 R 257314 CDS NP_965595.1 42519665 2743219 1703129..1703497 1 NC_005362.1 hypothetical protein 1703497 2743219 LJ0660 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965595.1 1703129 D 257314 CDS NP_965596.1 42519666 2743146 complement(1703563..1704867) 1 NC_005362.1 contains bacterial extracellular solute-binding domain; hypothetical protein 1704867 2743146 LJ0659 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965596.1 1703563 R 257314 CDS NP_965597.1 42519667 2742379 complement(1704912..1705913) 1 NC_005362.1 contains predicted metal-dependent hydrolase 3 domain; hypothetical protein 1705913 2742379 LJ0658 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965597.1 1704912 R 257314 CDS NP_965598.1 42519668 2742993 complement(1705948..1706214) 1 NC_005362.1 hypothetical protein 1706214 2742993 LJ0657 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965598.1 1705948 R 257314 CDS NP_965599.1 42519669 2743405 complement(1706198..1707028) 1 NC_005362.1 ABC transporter permease component 1707028 2743405 LJ0656 Lactobacillus johnsonii NCC 533 ABC transporter permease component NP_965599.1 1706198 R 257314 CDS NP_965600.1 42519670 2742890 complement(1707030..1707893) 1 NC_005362.1 ABC transporter permease component 1707893 2742890 LJ0655 Lactobacillus johnsonii NCC 533 ABC transporter permease component NP_965600.1 1707030 R 257314 CDS NP_965601.1 42519671 2743665 complement(1707893..1708978) 1 NC_005362.1 ABC transporter ATPase component 1708978 2743665 LJ0654 Lactobacillus johnsonii NCC 533 ABC transporter ATPase component NP_965601.1 1707893 R 257314 CDS NP_965602.1 42519672 2743236 complement(1709286..1710719) 1 NC_005362.1 dipeptidase 1710719 2743236 LJ0653 Lactobacillus johnsonii NCC 533 dipeptidase NP_965602.1 1709286 R 257314 CDS NP_965603.1 42519673 2743238 complement(1710750..1711598) 1 NC_005362.1 hypothetical protein 1711598 2743238 LJ0652 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965603.1 1710750 R 257314 CDS NP_965604.1 42519674 2741849 1711736..1712560 1 NC_005362.1 2,5-diketo-D-gluconate reductase 1712560 2741849 LJ0651 Lactobacillus johnsonii NCC 533 2,5-diketo-D-gluconate reductase NP_965604.1 1711736 D 257314 CDS NP_965605.1 42519675 2742617 1712577..1713701 1 NC_005362.1 contains permease domain; hypothetical protein 1713701 2742617 LJ0650 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965605.1 1712577 D 257314 CDS NP_965606.1 42519676 2742509 complement(1713728..1714690) 1 NC_005362.1 contains exonuclease domain; hypothetical protein 1714690 2742509 LJ0649 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965606.1 1713728 R 257314 CDS NP_965607.1 42519677 2742156 complement(1714704..1715510) 1 NC_005362.1 hypothetical protein 1715510 2742156 LJ0648 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965607.1 1714704 R 257314 CDS NP_965608.1 42519678 2741940 complement(1715520..1716155) 1 NC_005362.1 hypothetical protein 1716155 2741940 LJ0647 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965608.1 1715520 R 257314 CDS NP_965609.1 42519679 2742146 complement(1716163..1716612) 1 NC_005362.1 hypothetical protein 1716612 2742146 LJ0646 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965609.1 1716163 R 257314 CDS NP_965610.1 42519680 2741919 complement(1716619..1717893) 1 NC_005362.1 catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 1717893 2741919 LJ0645 Lactobacillus johnsonii NCC 533 peptidase T NP_965610.1 1716619 R 257314 CDS NP_965611.1 42519681 2742627 complement(1717956..1718492) 1 NC_005362.1 hypothetical protein 1718492 2742627 LJ0644 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965611.1 1717956 R 257314 CDS NP_965612.1 42519682 2742136 complement(1718562..1719332) 1 NC_005362.1 contains permease domain; hypothetical protein 1719332 2742136 LJ0643 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965612.1 1718562 R 257314 CDS NP_965613.1 42519683 2742605 complement(1719813..1720862) 1 NC_005362.1 transposase 1720862 2742605 LJ0642 Lactobacillus johnsonii NCC 533 transposase NP_965613.1 1719813 R 257314 CDS NP_965614.1 42519684 2742607 1721279..1725970 1 NC_005362.1 contains gram positive anchor domain; hypothetical protein 1725970 2742607 LJ0641 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965614.1 1721279 D 257314 CDS NP_965615.1 42519685 2742611 1726093..1726467 1 NC_005362.1 forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 1726467 mscL 2742611 mscL Lactobacillus johnsonii NCC 533 large-conductance mechanosensitive channel NP_965615.1 1726093 D 257314 CDS NP_965616.1 42519686 2742696 complement(1726563..1727054) 1 NC_005362.1 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA, glucose specific 1727054 2742696 LJ0639 Lactobacillus johnsonii NCC 533 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA, glucose specific NP_965616.1 1726563 R 257314 CDS NP_965617.1 42519687 2742257 complement(1727059..1727568) 1 NC_005362.1 hypothetical protein 1727568 2742257 LJ0638 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965617.1 1727059 R 257314 CDS NP_965618.1 42519688 2742296 complement(1727546..1728352) 1 NC_005362.1 contains transcriptional regulator helix-turn-helix domain; hypothetical protein 1728352 2742296 LJ0637 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965618.1 1727546 R 257314 CDS NP_965619.1 42519689 2742291 complement(1728441..1730327) 1 NC_005362.1 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIBC, arbutin specific 1730327 2742291 LJ0636 Lactobacillus johnsonii NCC 533 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIBC, arbutin specific NP_965619.1 1728441 R 257314 CDS NP_965620.1 42519690 2742289 complement(1730413..1731756) 1 NC_005362.1 6-phospho-alpha-glucosidase (maltose-6'-phosphate hydrolase) 1731756 2742289 LJ0635 Lactobacillus johnsonii NCC 533 6-phospho-alpha-glucosidase (maltose-6'-phosphate hydrolase) NP_965620.1 1730413 R 257314 CDS NP_965621.1 42519691 2742353 complement(1732175..1732909) 1 NC_005362.1 hypothetical protein 1732909 2742353 LJ0634 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965621.1 1732175 R 257314 CDS NP_965622.1 42519692 2742415 1733320..1734708 1 NC_005362.1 contains sodium/dicarboxylate symporter domain; hypothetical protein 1734708 2742415 LJ0633 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965622.1 1733320 D 257314 CDS NP_965623.1 42519693 2742290 1735232..1736341 1 NC_005362.1 contains methionine synthase, vitamin-B12 independent domain; hypothetical protein 1736341 2742290 LJ0632 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965623.1 1735232 D 257314 CDS NP_965624.1 42519694 2743085 1736356..1736832 1 NC_005362.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 1736832 2743085 LJ0631 Lactobacillus johnsonii NCC 533 S-ribosylhomocysteinase NP_965624.1 1736356 D 257314 CDS NP_965625.1 42519695 2742755 complement(1736894..1737289) 1 NC_005362.1 hypothetical protein 1737289 2742755 LJ0630 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965625.1 1736894 R 257314 CDS NP_965626.1 42519696 2743594 complement(1737376..1738179) 1 NC_005362.1 phosphoenolpyruvate-dependent sugar phosphotransferase system EIID, N-acetylgalactosamine specific 1738179 2743594 LJ0629 Lactobacillus johnsonii NCC 533 phosphoenolpyruvate-dependent sugar phosphotransferase system EIID, N-acetylgalactosamine specific NP_965626.1 1737376 R 257314 CDS NP_965627.1 42519697 2742947 complement(1738169..1738978) 1 NC_005362.1 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, N-acetylgalactosamine specific 1738978 2742947 LJ0628 Lactobacillus johnsonii NCC 533 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, N-acetylgalactosamine specific NP_965627.1 1738169 R 257314 CDS NP_965628.1 42519698 2743654 complement(1738994..1739914) 1 NC_005362.1 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIAB, mannose specific 1739914 2743654 LJ0627 Lactobacillus johnsonii NCC 533 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIAB, mannose specific NP_965628.1 1738994 R 257314 CDS NP_965629.1 42519699 2743659 complement(1740199..1741953) 1 NC_005362.1 oligopeptide ABC transporter ABC transporter solute-binding component 1741953 2743659 LJ0626 Lactobacillus johnsonii NCC 533 oligopeptide ABC transporter ABC transporter solute-binding component NP_965629.1 1740199 R 257314 CDS NP_965630.1 42519700 2743344 complement(1742205..1743116) 1 NC_005362.1 drug/metabolite transporter superfamily; DMT permease 1743116 2743344 LJ0625 Lactobacillus johnsonii NCC 533 DMT permease NP_965630.1 1742205 R 257314 CDS NP_965631.1 42519701 2742773 complement(1743410..1743673) 1 NC_005362.1 hypothetical protein 1743673 2742773 LJ0624 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965631.1 1743410 R 257314 CDS NP_965632.1 42519702 2743333 complement(1744077..1744745) 1 NC_005362.1 contains transcriptional antiterminator bglG domain; hypothetical protein 1744745 2743333 LJ0623 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965632.1 1744077 R 257314 CDS NP_965633.1 42519703 2742893 1745031..1746080 1 NC_005362.1 transposase 1746080 2742893 LJ0622 Lactobacillus johnsonii NCC 533 transposase NP_965633.1 1745031 D 257314 CDS NP_965634.1 42519704 2743345 complement(1746202..1754571) 1 NC_005362.1 contains gram positive anchor domain; hypothetical protein 1754571 2743345 LJ0621 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965634.1 1746202 R 257314 CDS NP_965635.1 42519705 2743339 complement(1754879..1755451) 1 NC_005362.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1755451 2743339 LJ0620 Lactobacillus johnsonii NCC 533 elongation factor P NP_965635.1 1754879 R 257314 CDS NP_965636.1 42519706 2743073 complement(1755464..1756315) 1 NC_005362.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 1756315 2743073 LJ0619 Lactobacillus johnsonii NCC 533 pantothenate kinase NP_965636.1 1755464 R 257314 CDS NP_965637.1 42519707 2743019 1756405..1756977 1 NC_005362.1 contains lipase/acylhydrolase with GDSL-like motif domain; hypothetical protein 1756977 2743019 LJ0618 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965637.1 1756405 D 257314 CDS NP_965638.1 42519708 2743179 complement(1757013..1757672) 1 NC_005362.1 hypothetical protein 1757672 2743179 LJ0617 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965638.1 1757013 R 257314 CDS NP_965639.1 42519709 2742808 complement(1757870..1760164) 1 NC_005362.1 contains superfamily I DNA and RNA helicase domain; hypothetical protein 1760164 2742808 LJ0616 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965639.1 1757870 R 257314 CDS NP_965640.1 42519710 2742505 1760333..1760977 1 NC_005362.1 hypothetical protein 1760977 2742505 LJ0615 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965640.1 1760333 D 257314 CDS NP_965641.1 42519711 2742790 1761379..1762665 1 NC_005362.1 cation-transporting ATPase 1762665 2742790 LJ0614 Lactobacillus johnsonii NCC 533 cation-transporting ATPase NP_965641.1 1761379 D 257314 CDS NP_965642.1 42519712 2742504 1762550..1764064 1 NC_005362.1 cation-transporting ATPase 1764064 2742504 LJ0613 Lactobacillus johnsonii NCC 533 cation-transporting ATPase NP_965642.1 1762550 D 257314 CDS NP_965643.1 42519713 2743711 complement(1764285..1765103) 1 NC_005362.1 contains transcriptional regulator helix-turn-helix domain; hypothetical protein 1765103 2743711 LJ0612 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965643.1 1764285 R 257314 CDS NP_965644.1 42519714 2742852 1765232..1765924 1 NC_005362.1 possible N-acetylmannosamine-6-phosphate epimerase; Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase 1765924 2742852 LJ0611 Lactobacillus johnsonii NCC 533 N-acetylmannosamine-6-phosphate 2-epimerase NP_965644.1 1765232 D 257314 CDS NP_965645.1 42519715 2742494 1765952..1768018 1 NC_005362.1 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, glucose specific 1768018 2742494 LJ0610 Lactobacillus johnsonii NCC 533 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, glucose specific NP_965645.1 1765952 D 257314 CDS NP_965646.1 42519716 2743272 complement(1768093..1768878) 1 NC_005362.1 ExoA; exodeoxyribonuclease A 1768878 2743272 LJ0609 Lactobacillus johnsonii NCC 533 exodeoxyribonuclease A NP_965646.1 1768093 R 257314 CDS NP_965647.1 42519717 2743265 complement(1768984..1769328) 1 NC_005362.1 hypothetical protein 1769328 2743265 LJ0608 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965647.1 1768984 R 257314 CDS NP_965648.1 42519718 2743297 1769432..1769647 1 NC_005362.1 hypothetical protein 1769647 2743297 LJ0607 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965648.1 1769432 D 257314 CDS NP_965649.1 42519719 2743001 1769690..1770340 1 NC_005362.1 phosphoglycerate mutase 1770340 2743001 LJ0606 Lactobacillus johnsonii NCC 533 phosphoglycerate mutase NP_965649.1 1769690 D 257314 CDS NP_965650.1 42519720 2743137 complement(1770375..1772237) 1 NC_005362.1 hypothetical protein 1772237 2743137 LJ0605 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965650.1 1770375 R 257314 CDS NP_965651.1 42519721 2743697 complement(1772257..1773003) 1 NC_005362.1 ABC transporter ATPase component 1773003 2743697 LJ0604 Lactobacillus johnsonii NCC 533 ABC transporter ATPase component NP_965651.1 1772257 R 257314 CDS NP_965652.1 42519722 2743629 1773243..1774685 1 NC_005362.1 contains amino acid permease domain; hypothetical protein 1774685 2743629 LJ0603 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965652.1 1773243 D 257314 CDS NP_965653.1 42519723 2743436 complement(1774761..1775480) 1 NC_005362.1 hypothetical protein 1775480 2743436 LJ0602 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965653.1 1774761 R 257314 CDS NP_965654.1 42519724 2743671 complement(1775477..1776211) 1 NC_005362.1 hypothetical protein 1776211 2743671 LJ0601 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965654.1 1775477 R 257314 CDS NP_965655.1 42519725 2743453 complement(1776213..1776983) 1 NC_005362.1 ABC transporter ATPase component 1776983 2743453 LJ0600 Lactobacillus johnsonii NCC 533 ABC transporter ATPase component NP_965655.1 1776213 R 257314 CDS NP_965656.1 42519726 2743674 1777904..1779184 1 NC_005362.1 contains GTPase domain; hypothetical protein 1779184 2743674 LJ0599 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965656.1 1777904 D 257314 CDS NP_965657.1 42519727 2742340 complement(1779228..1780436) 1 NC_005362.1 contains uncharacterized ACR domain; hypothetical protein 1780436 2742340 LJ0598 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965657.1 1779228 R 257314 CDS NP_965658.1 42519728 2742227 complement(1780540..1781745) 1 NC_005362.1 contains NLP/P60 family domain; hypothetical protein 1781745 2742227 LJ0597 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965658.1 1780540 R 257314 CDS NP_965659.1 42519729 2742273 complement(1781939..1782496) 1 NC_005362.1 guanylate kinase 1782496 2742273 LJ0596 Lactobacillus johnsonii NCC 533 guanylate kinase NP_965659.1 1781939 R 257314 CDS NP_965660.1 42519730 2742329 1782587..1782880 1 NC_005362.1 hypothetical protein 1782880 2742329 LJ0595 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965660.1 1782587 D 257314 CDS NP_965661.1 42519731 2742267 1782929..1784458 1 NC_005362.1 hypothetical protein 1784458 2742267 LJ0594 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965661.1 1782929 D 257314 CDS NP_965662.1 42519732 2742413 complement(1784528..1785154) 1 NC_005362.1 hypothetical protein 1785154 2742413 LJ0593 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965662.1 1784528 R 257314 CDS NP_965663.1 42519733 2742270 1785296..1785757 1 NC_005362.1 in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF; ribonucleotide reductase stimulatory protein 1785757 nrdI 2742270 nrdI Lactobacillus johnsonii NCC 533 ribonucleotide reductase stimulatory protein NP_965663.1 1785296 D 257314 CDS NP_965664.1 42519734 2742328 1785750..1786691 1 NC_005362.1 contains ribonucleotide reductase, small chain domain; B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 1786691 nrdF 2742328 nrdF Lactobacillus johnsonii NCC 533 ribonucleotide-diphosphate reductase subunit beta NP_965664.1 1785750 D 257314 CDS NP_965665.1 42519735 2742728 complement(1786716..1787201) 1 NC_005362.1 hypothetical protein 1787201 2742728 LJ0590 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965665.1 1786716 R 257314 CDS NP_965666.1 42519736 2742706 complement(1787287..1787628) 1 NC_005362.1 contains PemK-like protein domain; hypothetical protein 1787628 2742706 LJ0589 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965666.1 1787287 R 257314 CDS NP_965667.1 42519737 2742708 complement(1787615..1787866) 1 NC_005362.1 hypothetical protein 1787866 2742708 LJ0588 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965667.1 1787615 R 257314 CDS NP_965668.1 42519738 2742326 complement(1788097..1788567) 1 NC_005362.1 hypothetical protein 1788567 2742326 LJ0587 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965668.1 1788097 R 257314 CDS NP_965669.1 42519739 2741864 complement(1788567..1789349) 1 NC_005362.1 contains permease domain; hypothetical protein 1789349 2741864 LJ0586 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965669.1 1788567 R 257314 CDS NP_965670.1 42519740 2743754 complement(1789366..1790913) 1 NC_005362.1 ABC transporter ATPase component 1790913 2743754 LJ0585 Lactobacillus johnsonii NCC 533 ABC transporter ATPase component NP_965670.1 1789366 R 257314 CDS NP_965671.1 42519741 2742830 complement(1790913..1791296) 1 NC_005362.1 hypothetical protein 1791296 2742830 LJ0584 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965671.1 1790913 R 257314 CDS NP_965672.1 42519742 2743417 1791521..1791793 1 NC_005362.1 hypothetical protein 1791793 2743417 LJ0583 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965672.1 1791521 D 257314 CDS NP_965673.1 42519743 2743391 complement(1791898..1793022) 1 NC_005362.1 similar to transcriptional regulator lytR; hypothetical protein 1793022 2743391 LJ0582 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965673.1 1791898 R 257314 CDS NP_965674.1 42519744 2743379 1793186..1794994 1 NC_005362.1 oligoendopeptidase F 1794994 2743379 LJ0581 Lactobacillus johnsonii NCC 533 oligoendopeptidase F NP_965674.1 1793186 D 257314 CDS NP_965675.1 42519745 2742975 complement(1795063..1796574) 1 NC_005362.1 L-lactate permease 1796574 2742975 LJ0580 Lactobacillus johnsonii NCC 533 L-lactate permease NP_965675.1 1795063 R 257314 CDS NP_965676.1 42519746 2743358 complement(1796696..1797487) 1 NC_005362.1 possibly for Mn/Zn; ABC transporter permease component 1797487 2743358 LJ0579 Lactobacillus johnsonii NCC 533 ABC transporter permease component NP_965676.1 1796696 R 257314 CDS NP_965677.1 42519747 2742992 complement(1797487..1798146) 1 NC_005362.1 possibly for Mn/Zn; ABC transporter ATPase component 1798146 2742992 LJ0578 Lactobacillus johnsonii NCC 533 ABC transporter ATPase component NP_965677.1 1797487 R 257314 CDS NP_965678.1 42519748 2743061 complement(1798183..1799082) 1 NC_005362.1 possibly for Mn/Zn; ABC transporter solute-binding component 1799082 2743061 LJ0577 Lactobacillus johnsonii NCC 533 ABC transporter solute-binding component NP_965678.1 1798183 R 257314 CDS NP_965679.1 42519749 2743281 complement(1799383..1799661) 1 NC_005362.1 contains transcriptional regulator helix-turn-helix domain, arsR family; hypothetical protein 1799661 2743281 LJ0576 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965679.1 1799383 R 257314 CDS NP_965680.1 42519750 2743185 complement(1799691..1800476) 1 NC_005362.1 contains predicted hydrolases of the HAD superfamily domain; hypothetical protein 1800476 2743185 LJ0575 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965680.1 1799691 R 257314 CDS NP_965681.1 42519751 2743311 complement(1800576..1805291) 1 NC_005362.1 hypothetical protein 1805291 2743311 LJ0574 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965681.1 1800576 R 257314 CDS NP_965682.1 42519752 2743254 complement(1805547..1806014) 1 NC_005362.1 hypothetical protein 1806014 2743254 LJ0573 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965682.1 1805547 R 257314 CDS NP_965683.1 42519753 2743042 complement(1806355..1808340) 1 NC_005362.1 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, fructose specific 1808340 2743042 LJ0572 Lactobacillus johnsonii NCC 533 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, fructose specific NP_965683.1 1806355 R 257314 CDS NP_965684.1 42519754 2743209 complement(1808381..1809295) 1 NC_005362.1 fructose-1-phosphate kinase 1809295 2743209 LJ0571 Lactobacillus johnsonii NCC 533 fructose-1-phosphate kinase NP_965684.1 1808381 R 257314 CDS NP_965685.1 42519755 2742087 complement(1809292..1810050) 1 NC_005362.1 contains bacterial regulatory protein deoR domain; hypothetical protein 1810050 2742087 LJ0570 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965685.1 1809292 R 257314 CDS NP_965686.1 42519756 2743166 complement(1810227..1812533) 1 NC_005362.1 alpha-glucosidase 1812533 2743166 LJ0569 Lactobacillus johnsonii NCC 533 alpha-glucosidase NP_965686.1 1810227 R 257314 CDS NP_965687.1 42519757 2743092 complement(1812618..1813844) 1 NC_005362.1 ABC transporter permease component 1813844 2743092 LJ0568 Lactobacillus johnsonii NCC 533 ABC transporter permease component NP_965687.1 1812618 R 257314 CDS NP_965688.1 42519758 2743103 complement(1813837..1814733) 1 NC_005362.1 ABC transporter ATPase component 1814733 2743103 LJ0567 Lactobacillus johnsonii NCC 533 ABC transporter ATPase component NP_965688.1 1813837 R 257314 CDS NP_965689.1 42519759 2742128 complement(1814858..1815607) 1 NC_005362.1 aspartate racemase 1815607 2742128 LJ0566 Lactobacillus johnsonii NCC 533 aspartate racemase NP_965689.1 1814858 R 257314 CDS NP_965690.1 42519760 2742098 complement(1815610..1817181) 1 NC_005362.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 1817181 murE 2742098 murE Lactobacillus johnsonii NCC 533 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase NP_965690.1 1815610 R 257314 CDS NP_965691.1 42519761 2742041 complement(1817218..1818375) 1 NC_005362.1 two-component system histidine kinase 1818375 2742041 LJ0564 Lactobacillus johnsonii NCC 533 two-component system histidine kinase NP_965691.1 1817218 R 257314 CDS NP_965692.1 42519762 2742125 complement(1818381..1819067) 1 NC_005362.1 two-component system response regulator 1819067 2742125 LJ0563 Lactobacillus johnsonii NCC 533 two-component system response regulator NP_965692.1 1818381 R 257314 CDS NP_965693.1 42519763 2741962 complement(1819218..1821074) 1 NC_005362.1 ABC transporter ATPase and permease components 1821074 2741962 LJ0562 Lactobacillus johnsonii NCC 533 ABC transporter ATPase and permease components NP_965693.1 1819218 R 257314 CDS NP_965694.1 42519764 2742032 complement(1821088..1822818) 1 NC_005362.1 ABC transporter ATPase and permease components 1822818 2742032 LJ0561 Lactobacillus johnsonii NCC 533 ABC transporter ATPase and permease components NP_965694.1 1821088 R 257314 CDS NP_965695.1 42519765 2741987 complement(1822954..1823787) 1 NC_005362.1 hypothetical protein 1823787 2741987 LJ0560 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965695.1 1822954 R 257314 CDS NP_965696.1 42519766 2742615 complement(1823799..1824899) 1 NC_005362.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 1824899 2742615 LJ0559 Lactobacillus johnsonii NCC 533 GTP-dependent nucleic acid-binding protein EngD NP_965696.1 1823799 R 257314 CDS NP_965697.1 42519767 2742637 complement(1824922..1825170) 1 NC_005362.1 hypothetical protein 1825170 2742637 LJ0558 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965697.1 1824922 R 257314 CDS NP_965698.1 42519768 2743458 complement(1825190..1826071) 1 NC_005362.1 chromosome partitioning protein ParB 1826071 2743458 LJ0557 Lactobacillus johnsonii NCC 533 chromosome partitioning protein ParB NP_965698.1 1825190 R 257314 CDS NP_965699.1 42519769 2742103 complement(1826055..1826828) 1 NC_005362.1 chromosome partitioning protein ParA 1826828 2742103 LJ0556 Lactobacillus johnsonii NCC 533 chromosome partitioning protein ParA NP_965699.1 1826055 R 257314 CDS NP_965700.1 42519770 2743504 complement(1826844..1827725) 1 NC_005362.1 chromosome partitioning protein ParB 1827725 2743504 LJ0555 Lactobacillus johnsonii NCC 533 chromosome partitioning protein ParB NP_965700.1 1826844 R 257314 CDS NP_965701.1 42519771 2742244 complement(1827747..1828466) 1 NC_005362.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 1828466 gidB 2742244 gidB Lactobacillus johnsonii NCC 533 16S rRNA methyltransferase GidB NP_965701.1 1827747 R 257314 CDS NP_965702.1 42519772 2742859 1828665..1829201 1 NC_005362.1 hypothetical protein 1829201 2742859 LJ0553 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965702.1 1828665 D 257314 CDS NP_965703.1 42519773 2743148 complement(1829246..1830172) 1 NC_005362.1 contains thiamine biosynthesis lipoprotein domain apbE; hypothetical protein 1830172 2743148 LJ0552 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965703.1 1829246 R 257314 CDS NP_965704.1 42519774 2743304 complement(1830169..1830972) 1 NC_005362.1 hypothetical protein 1830972 2743304 LJ0551 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965704.1 1830169 R 257314 CDS NP_965705.1 42519775 2743036 complement(1830983..1832020) 1 NC_005362.1 hypothetical protein 1832020 2743036 LJ0550 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965705.1 1830983 R 257314 CDS NP_965706.1 42519776 2742869 complement(1832151..1832705) 1 NC_005362.1 contains predicted flavoprotein domain; hypothetical protein 1832705 2742869 LJ0549 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965706.1 1832151 R 257314 CDS NP_965707.1 42519777 2743300 complement(1832718..1833254) 1 NC_005362.1 contains predicted flavoprotein domain; hypothetical protein 1833254 2743300 LJ0548 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965707.1 1832718 R 257314 CDS NP_965708.1 42519778 2742399 complement(1833390..1834013) 1 NC_005362.1 contains bacterial regulatory protein tetR domain; hypothetical protein 1834013 2742399 LJ0547 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965708.1 1833390 R 257314 CDS NP_965709.1 42519779 2742710 complement(1834159..1834401) 1 NC_005362.1 hypothetical protein 1834401 2742710 LJ0546 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965709.1 1834159 R 257314 CDS NP_965710.1 42519780 2742354 1834479..1835891 1 NC_005362.1 dipeptidase 1835891 2742354 LJ0545 Lactobacillus johnsonii NCC 533 dipeptidase NP_965710.1 1834479 D 257314 CDS NP_965711.1 42519781 2743597 complement(1835953..1837431) 1 NC_005362.1 6-phospho-beta-glucosidase 1837431 2743597 LJ0544 Lactobacillus johnsonii NCC 533 6-phospho-beta-glucosidase NP_965711.1 1835953 R 257314 CDS NP_965712.1 42519782 2742477 complement(1837441..1839303) 1 NC_005362.1 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, beta-glucosides specific 1839303 2742477 LJ0543 Lactobacillus johnsonii NCC 533 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, beta-glucosides specific NP_965712.1 1837441 R 257314 CDS NP_965713.1 42519783 2743620 complement(1839300..1840148) 1 NC_005362.1 contains transcriptional antiterminator bglG domain; hypothetical protein 1840148 2743620 LJ0542 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965713.1 1839300 R 257314 CDS NP_965714.1 42519784 2742444 complement(1840291..1840971) 1 NC_005362.1 ABC transporter ATPase component 1840971 2742444 LJ0541 Lactobacillus johnsonii NCC 533 ABC transporter ATPase component NP_965714.1 1840291 R 257314 CDS NP_965715.1 42519785 2742232 complement(1840986..1842038) 1 NC_005362.1 ABC transporter permease component 1842038 2742232 LJ0540 Lactobacillus johnsonii NCC 533 ABC transporter permease component NP_965715.1 1840986 R 257314 CDS NP_965716.1 42519786 2743524 complement(1842045..1842566) 1 NC_005362.1 contains bacterial regulatory protein tetR domain; hypothetical protein 1842566 2743524 LJ0539 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965716.1 1842045 R 257314 CDS NP_965717.1 42519787 2742083 complement(1842698..1843297) 1 NC_005362.1 contains phosphoglycerate mutase domain; hypothetical protein 1843297 2742083 LJ0538 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965717.1 1842698 R 257314 CDS NP_965718.1 42519788 2743227 complement(1843304..1843930) 1 NC_005362.1 contains phosphoglycerate mutase domain; hypothetical protein 1843930 2743227 LJ0537 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965718.1 1843304 R 257314 CDS NP_965719.1 42519789 2743198 1844051..1844800 1 NC_005362.1 contains alpha/beta hydrolase fold domain; hypothetical protein 1844800 2743198 LJ0536 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965719.1 1844051 D 257314 CDS NP_965720.1 42519790 2742983 complement(1844842..1845600) 1 NC_005362.1 hypothetical protein 1845600 2742983 LJ0535 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965720.1 1844842 R 257314 CDS NP_965721.1 42519791 2743275 complement(1845590..1845949) 1 NC_005362.1 hypothetical protein 1845949 2743275 LJ0534 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965721.1 1845590 R 257314 CDS NP_965722.1 42519792 2742990 1846064..1846753 1 NC_005362.1 hypothetical protein 1846753 2742990 LJ0533 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965722.1 1846064 D 257314 CDS NP_965723.1 42519793 2743342 complement(1846821..1847720) 1 NC_005362.1 hypothetical protein 1847720 2743342 LJ0532 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965723.1 1846821 R 257314 CDS NP_965724.1 42519794 2742926 complement(1847725..1849056) 1 NC_005362.1 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, cellobiose specific 1849056 2742926 LJ0531 Lactobacillus johnsonii NCC 533 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, cellobiose specific NP_965724.1 1847725 R 257314 CDS NP_965725.1 42519795 2741922 complement(1849205..1850983) 1 NC_005362.1 contains glycerophosphoryl diester phosphodiester domain; hypothetical protein 1850983 2741922 LJ0530 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965725.1 1849205 R 257314 CDS NP_965726.1 42519796 2743680 complement(1851065..1851826) 1 NC_005362.1 hypothetical protein 1851826 2743680 LJ0529 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965726.1 1851065 R 257314 CDS NP_965727.1 42519797 2742568 complement(1852029..1852880) 1 NC_005362.1 contains transcriptional regulator helix-turn-helix domain, rpiR family; hypothetical protein 1852880 2742568 LJ0528 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965727.1 1852029 R 257314 CDS NP_965728.1 42519798 2743106 complement(1852929..1853705) 1 NC_005362.1 hypothetical protein 1853705 2743106 LJ0527 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965728.1 1852929 R 257314 CDS NP_965729.1 42519799 2742640 complement(1853857..1854279) 1 NC_005362.1 contains 3-dehydroquinate dehydratase domain; hypothetical protein 1854279 2742640 LJ0526 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965729.1 1853857 R 257314 CDS NP_965730.1 42519800 2742173 complement(1854340..1855206) 1 NC_005362.1 hypothetical protein 1855206 2742173 LJ0525 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965730.1 1854340 R 257314 CDS NP_965731.1 42519801 2742622 1855382..1855813 1 NC_005362.1 contains permease domain; hypothetical protein 1855813 2742622 LJ0524 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965731.1 1855382 D 257314 CDS NP_965732.1 42519802 2742597 1855774..1856595 1 NC_005362.1 contains permease domain; hypothetical protein 1856595 2742597 LJ0523 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965732.1 1855774 D 257314 CDS NP_965733.1 42519803 2743655 1856618..1857301 1 NC_005362.1 contains glutamine amidotransferase class-I domain; hypothetical protein 1857301 2743655 LJ0522 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965733.1 1856618 D 257314 CDS NP_965734.1 42519804 2742036 complement(1857344..1858954) 1 NC_005362.1 ABC transporter ATPase and permease components 1858954 2742036 LJ0521 Lactobacillus johnsonii NCC 533 ABC transporter ATPase and permease components NP_965734.1 1857344 R 257314 CDS NP_965735.1 42519805 2742356 complement(1858974..1859480) 1 NC_005362.1 contains appr-1'-p processing enzyme domain; hypothetical protein 1859480 2742356 LJ0520 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965735.1 1858974 R 257314 CDS NP_965736.1 42519806 2742320 complement(1859597..1861540) 1 NC_005362.1 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, sucrose specific 1861540 2742320 LJ0519 Lactobacillus johnsonii NCC 533 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, sucrose specific NP_965736.1 1859597 R 257314 CDS NP_965737.1 42519807 2743485 1861776..1863245 1 NC_005362.1 sucrose-6-phosphate hydrolase 1863245 2743485 LJ0518 Lactobacillus johnsonii NCC 533 sucrose-6-phosphate hydrolase NP_965737.1 1861776 D 257314 CDS NP_965738.1 42519808 2742124 1863256..1864242 1 NC_005362.1 sucrose operon repressor 1864242 2742124 LJ0517 Lactobacillus johnsonii NCC 533 sucrose operon repressor NP_965738.1 1863256 D 257314 CDS NP_965739.1 42519809 2742099 complement(1864280..1865056) 1 NC_005362.1 hypothetical protein 1865056 2742099 LJ0516 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965739.1 1864280 R 257314 CDS NP_965740.1 42519810 2743096 1865259..1866074 1 NC_005362.1 phosphomethylpyrimidine kinase (HMP-phosphate kinase) 1866074 2743096 LJ0515 Lactobacillus johnsonii NCC 533 phosphomethylpyrimidine kinase (HMP-phosphate kinase) NP_965740.1 1865259 D 257314 CDS NP_965741.1 42519811 2743016 1866150..1866833 1 NC_005362.1 hypothetical protein 1866833 2743016 LJ0514 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965741.1 1866150 D 257314 CDS NP_965742.1 42519812 2743149 1866814..1868202 1 NC_005362.1 contains amino acid permease domain; hypothetical protein 1868202 2743149 LJ0513 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965742.1 1866814 D 257314 CDS NP_965743.1 42519813 2743310 complement(1868240..1869142) 1 NC_005362.1 contains DUF6 domain; hypothetical protein 1869142 2743310 LJ0512 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965743.1 1868240 R 257314 CDS NP_965744.1 42519814 2742784 1869563..1870573 1 NC_005362.1 catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA 1870573 2742784 LJ0511 Lactobacillus johnsonii NCC 533 asparagine synthetase AsnA NP_965744.1 1869563 D 257314 CDS NP_965745.1 42519815 2743406 complement(1870620..1872020) 1 NC_005362.1 contains amino acid permease domain; hypothetical protein 1872020 2743406 LJ0510 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965745.1 1870620 R 257314 CDS NP_965746.1 42519816 2742896 complement(1872038..1872763) 1 NC_005362.1 contains glutamine amidotransferase class-I domain; hypothetical protein 1872763 2742896 LJ0509 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965746.1 1872038 R 257314 CDS NP_965747.1 42519817 2743047 complement(1872926..1874308) 1 NC_005362.1 contains amino acid permease domain; hypothetical protein 1874308 2743047 LJ0508 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965747.1 1872926 R 257314 CDS NP_965748.1 42519818 2742969 complement(1874298..1875692) 1 NC_005362.1 contains amino acid permease domain; hypothetical protein 1875692 2742969 LJ0507 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965748.1 1874298 R 257314 CDS NP_965749.1 42519819 2742507 complement(1875850..1876212) 1 NC_005362.1 hypothetical protein 1876212 2742507 LJ0506 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965749.1 1875850 R 257314 CDS NP_965750.1 42519820 2742882 complement(1876277..1877206) 1 NC_005362.1 phosphoenolpyruvate-dependent sugar phosphotransferase system EIID mannose specific 1877206 2742882 LJ0505 Lactobacillus johnsonii NCC 533 phosphoenolpyruvate-dependent sugar phosphotransferase system EIID mannose specific NP_965750.1 1876277 R 257314 CDS NP_965751.1 42519821 2742874 complement(1877236..1878039) 1 NC_005362.1 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, mannose specific 1878039 2742874 LJ0504 Lactobacillus johnsonii NCC 533 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, mannose specific NP_965751.1 1877236 R 257314 CDS NP_965752.1 42519822 2742813 complement(1878061..1879056) 1 NC_005362.1 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIAB, mannose specific 1879056 2742813 LJ0503 Lactobacillus johnsonii NCC 533 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIAB, mannose specific NP_965752.1 1878061 R 257314 CDS NP_965753.1 42519823 2742578 complement(1890385..1891782) 1 NC_005362.1 amino acid transporter 1891782 2742578 LJ1774 Lactobacillus johnsonii NCC 533 amino acid transporter NP_965753.1 1890385 R 257314 CDS NP_965754.1 42519824 2742022 complement(1891909..1894023) 1 NC_005362.1 ATP-dependent Clp protease ATP-binding subunit clpE 1894023 2742022 LJ1775 Lactobacillus johnsonii NCC 533 ATP-dependent Clp protease ATP-binding subunit clpE NP_965754.1 1891909 R 257314 CDS NP_965755.1 42519825 2741935 complement(1894276..1895187) 1 NC_005362.1 hypothetical protein 1895187 2741935 LJ1776 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965755.1 1894276 R 257314 CDS NP_965756.1 42519826 2743206 complement(1895177..1896496) 1 NC_005362.1 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, cellobiose specific 1896496 2743206 LJ1777 Lactobacillus johnsonii NCC 533 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, cellobiose specific NP_965756.1 1895177 R 257314 CDS NP_965757.1 42519827 2742211 1896662..1896898 1 NC_005362.1 hypothetical protein 1896898 2742211 LJ1778 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965757.1 1896662 D 257314 CDS NP_965758.1 42519828 2741909 1897016..1898215 1 NC_005362.1 major facilitator superfamily permease 1898215 2741909 LJ1779 Lactobacillus johnsonii NCC 533 major facilitator superfamily permease NP_965758.1 1897016 D 257314 CDS NP_965759.1 42519829 2742157 complement(1898455..1899246) 1 NC_005362.1 contains penicillin binding protein domain; hypothetical protein 1899246 2742157 LJ1780 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965759.1 1898455 R 257314 CDS NP_965760.1 42519830 2742308 complement(1899408..1900709) 1 NC_005362.1 DltD precursor 1900709 2742308 LJ1781 Lactobacillus johnsonii NCC 533 DltD precursor NP_965760.1 1899408 R 257314 CDS NP_965761.1 42519831 2742680 complement(1900702..1900941) 1 NC_005362.1 D-alanyl carrier protein subunit; involved in the incorporation of D-alanine into membrane-associated D-alanyl-lipoteichoic acid; D-alanyl carrier protein is the acceptor of activated D-alanine which it donates to a membrane acceptor(D-alanyl transferase) for incorporation into membrane lipoteichoic acid; D-alanine--poly(phosphoribitol) ligase subunit 2 1900941 2742680 LJ1782 Lactobacillus johnsonii NCC 533 D-alanine--poly(phosphoribitol) ligase subunit 2 NP_965761.1 1900702 R 257314 CDS NP_965762.1 42519832 2742312 complement(1900971..1902194) 1 NC_005362.1 DLTB protein 1902194 2742312 LJ1783 Lactobacillus johnsonii NCC 533 DLTB protein NP_965762.1 1900971 R 257314 CDS NP_965763.1 42519833 2742360 complement(1902191..1903699) 1 NC_005362.1 transfers D-alanine to the D-alanyl carrier protein during the incorporation of D-alanine into lipoteichoic acid; D-alanine--poly(phosphoribitol) ligase subunit 1 1903699 2742360 LJ1784 Lactobacillus johnsonii NCC 533 D-alanine--poly(phosphoribitol) ligase subunit 1 NP_965763.1 1902191 R 257314 CDS NP_965764.1 42519834 2742351 complement(1904013..1904303) 1 NC_005362.1 hypothetical protein 1904303 2742351 LJ1785 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965764.1 1904013 R 257314 CDS NP_965765.1 42519835 2742744 complement(1904306..1905457) 1 NC_005362.1 hypothetical protein 1905457 2742744 LJ1786 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965765.1 1904306 R 257314 CDS NP_965766.1 42519836 2743695 complement(1905813..1906124) 1 NC_005362.1 hypothetical protein 1906124 2743695 LJ1787 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965766.1 1905813 R 257314 CDS NP_965767.1 42519837 2742132 complement(1906129..1906473) 1 NC_005362.1 hypothetical protein 1906473 2742132 LJ1788 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965767.1 1906129 R 257314 CDS NP_965768.1 42519838 2742741 complement(1906475..1906762) 1 NC_005362.1 hypothetical protein 1906762 2742741 LJ1789 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965768.1 1906475 R 257314 CDS NP_965769.1 42519839 2742722 1907049..1907333 1 NC_005362.1 hypothetical protein 1907333 2742722 LJ1790 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965769.1 1907049 D 257314 CDS NP_965770.1 42519840 2742279 1907660..1908154 1 NC_005362.1 contains CBS domain; hypothetical protein 1908154 2742279 LJ1791 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965770.1 1907660 D 257314 CDS NP_965771.1 42519841 2742283 1908225..1910096 1 NC_005362.1 cation-transporting ATPase 1910096 2742283 LJ1792 Lactobacillus johnsonii NCC 533 cation-transporting ATPase NP_965771.1 1908225 D 257314 CDS NP_965772.1 42519842 2743625 1910268..1911428 1 NC_005362.1 Na+/H+ antiporter 1911428 2743625 LJ1793 Lactobacillus johnsonii NCC 533 Na+/H+ antiporter NP_965772.1 1910268 D 257314 CDS NP_965773.1 42519843 2743601 complement(1911465..1912118) 1 NC_005362.1 hypothetical protein 1912118 2743601 LJ1794 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965773.1 1911465 R 257314 CDS NP_965774.1 42519844 2743462 complement(1912118..1913686) 1 NC_005362.1 ABC transporter ATPase and permease components 1913686 2743462 LJ1795 Lactobacillus johnsonii NCC 533 ABC transporter ATPase and permease components NP_965774.1 1912118 R 257314 CDS NP_965775.1 42519845 2743540 1913791..1914654 1 NC_005362.1 contains transcriptional regulator helix-turn-helix domain; hypothetical protein 1914654 2743540 LJ1796 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965775.1 1913791 D 257314 CDS NP_965776.1 42519846 2743461 complement(1914679..1914909) 1 NC_005362.1 hypothetical protein 1914909 2743461 LJ1797 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965776.1 1914679 R 257314 CDS NP_965777.1 42519847 2742466 complement(1914926..1915573) 1 NC_005362.1 catalyzes the removal of 5-oxoproline from various penultimate amino acid residues except L-proline; pyrrolidone-carboxylate peptidase 1915573 2742466 LJ1798 Lactobacillus johnsonii NCC 533 pyrrolidone-carboxylate peptidase NP_965777.1 1914926 R 257314 CDS NP_965778.1 42519848 2743484 complement(1915593..1916516) 1 NC_005362.1 hypothetical protein 1916516 2743484 LJ1799 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965778.1 1915593 R 257314 CDS NP_965779.1 42519849 2742447 complement(1916518..1917192) 1 NC_005362.1 hypothetical protein 1917192 2742447 LJ1800 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965779.1 1916518 R 257314 CDS NP_965780.1 42519850 2743658 complement(1917306..1917794) 1 NC_005362.1 hypothetical protein 1917794 2743658 LJ1801 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965780.1 1917306 R 257314 CDS NP_965781.1 42519851 2743690 complement(1917817..1918239) 1 NC_005362.1 hypothetical protein 1918239 2743690 LJ1802 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965781.1 1917817 R 257314 CDS NP_965782.1 42519852 2742436 complement(1918304..1918828) 1 NC_005362.1 hypothetical protein 1918828 2742436 LJ1803 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965782.1 1918304 R 257314 CDS NP_965783.1 42519853 2742481 1918971..1920425 1 NC_005362.1 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, galactitol specific 1920425 2742481 LJ1804 Lactobacillus johnsonii NCC 533 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, galactitol specific NP_965783.1 1918971 D 257314 CDS NP_965784.1 42519854 2742700 1920476..1920985 1 NC_005362.1 hypothetical protein 1920985 2742700 LJ1805 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965784.1 1920476 D 257314 CDS NP_965785.1 42519855 2742411 complement(1921002..1921649) 1 NC_005362.1 contains CAAX amino terminal protease domain; hypothetical protein 1921649 2742411 LJ1806 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965785.1 1921002 R 257314 CDS NP_965786.1 42519856 2742303 1921729..1922850 1 NC_005362.1 hypothetical protein 1922850 2742303 LJ1807 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965786.1 1921729 D 257314 CDS NP_965787.1 42519857 2742164 1922863..1924755 1 NC_005362.1 ABC transporter ATPase component 1924755 2742164 LJ1808 Lactobacillus johnsonii NCC 533 ABC transporter ATPase component NP_965787.1 1922863 D 257314 CDS NP_965788.1 42519858 2742753 1924757..1925203 1 NC_005362.1 ABC transporter permease component 1925203 2742753 LJ1809 Lactobacillus johnsonii NCC 533 ABC transporter permease component NP_965788.1 1924757 D 257314 CDS NP_965789.1 42519859 2742201 1925368..1926759 1 NC_005362.1 cytochrome d ubiquinol oxidase subunit I 1926759 2742201 LJ1810 Lactobacillus johnsonii NCC 533 cytochrome d ubiquinol oxidase subunit I NP_965789.1 1925368 D 257314 CDS NP_965790.1 42519860 2741947 1926759..1927781 1 NC_005362.1 cytochrome d ubiquinol oxidase subunit II 1927781 2741947 LJ1811 Lactobacillus johnsonii NCC 533 cytochrome d ubiquinol oxidase subunit II NP_965790.1 1926759 D 257314 CDS NP_965791.1 42519861 2741944 1927800..1929617 1 NC_005362.1 ABC transporter ATPase and permease components 1929617 2741944 LJ1812 Lactobacillus johnsonii NCC 533 ABC transporter ATPase and permease components NP_965791.1 1927800 D 257314 CDS NP_965792.1 42519862 2742120 1929614..1931359 1 NC_005362.1 ABC transporter ATPase and permease components 1931359 2742120 LJ1813 Lactobacillus johnsonii NCC 533 ABC transporter ATPase and permease components NP_965792.1 1929614 D 257314 CDS NP_965793.1 42519863 2743651 1931379..1932455 1 NC_005362.1 contains 1,4-dihydroxy-2-naphthoate octaprenyltransferase domain; hypothetical protein 1932455 2743651 LJ1814 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965793.1 1931379 D 257314 CDS NP_965794.1 42519864 2742793 1932520..1933452 1 NC_005362.1 contains putative phosphate/phosphonate-binding protein domain; hypothetical protein 1933452 2742793 LJ1815 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965794.1 1932520 D 257314 CDS NP_965795.1 42519865 2742815 1933546..1934616 1 NC_005362.1 similar to CD4+ T cell-stimulating antigen precursor; hypothetical protein 1934616 2742815 LJ1816 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965795.1 1933546 D 257314 CDS NP_965796.1 42519866 2743701 complement(1934639..1935499) 1 NC_005362.1 contains transcriptional regulator helix-turn-helix domain, rpiR family domain; hypothetical protein 1935499 2743701 LJ1817 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965796.1 1934639 R 257314 CDS NP_965797.1 42519867 2742072 complement(1935502..1936572) 1 NC_005362.1 hypothetical protein 1936572 2742072 LJ1818 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965797.1 1935502 R 257314 CDS NP_965798.1 42519868 2742081 complement(1936629..1937525) 1 NC_005362.1 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid-6-phosphate etherase 1937525 murQ 2742081 murQ Lactobacillus johnsonii NCC 533 N-acetylmuramic acid-6-phosphate etherase NP_965798.1 1936629 R 257314 CDS NP_965799.1 42519869 2742028 complement(1937534..1939537) 1 NC_005362.1 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, beta-glucoside specific 1939537 2742028 LJ1820 Lactobacillus johnsonii NCC 533 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, beta-glucoside specific NP_965799.1 1937534 R 257314 CDS NP_965800.1 42519870 2742047 1939856..1940611 1 NC_005362.1 contains DUF81 domain; hypothetical protein 1940611 2742047 LJ1821 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965800.1 1939856 D 257314 CDS NP_965801.1 42519871 2741972 complement(1940696..1941535) 1 NC_005362.1 contains aldo/keto reductase domain; hypothetical protein 1941535 2741972 LJ1822 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965801.1 1940696 R 257314 CDS NP_965802.1 42519872 2741979 1941662..1942381 1 NC_005362.1 glucosamine-6-P isomerase 1942381 2741979 LJ1823 Lactobacillus johnsonii NCC 533 glucosamine-6-P isomerase NP_965802.1 1941662 D 257314 CDS NP_965803.1 42519873 2742213 1942591..1943238 1 NC_005362.1 deoxyadenosine kinase 1943238 2742213 LJ1824 Lactobacillus johnsonii NCC 533 deoxyadenosine kinase NP_965803.1 1942591 D 257314 CDS NP_965804.1 42519874 2742011 1943260..1943934 1 NC_005362.1 deoxyguanosine kinase 1943934 2742011 LJ1825 Lactobacillus johnsonii NCC 533 deoxyguanosine kinase NP_965804.1 1943260 D 257314 CDS NP_965805.1 42519875 2742684 complement(1943988..1945226) 1 NC_005362.1 glycolate oxidase 1945226 2742684 LJ1826 Lactobacillus johnsonii NCC 533 glycolate oxidase NP_965805.1 1943988 R 257314 CDS NP_965806.1 42519876 2741954 1945469..1946779 1 NC_005362.1 contains uracil-xanthine permease domain; hypothetical protein 1946779 2741954 LJ1827 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965806.1 1945469 D 257314 CDS NP_965807.1 42519877 2741865 complement(1946864..1947598) 1 NC_005362.1 contains bacterial regulatory merR domain; hypothetical protein 1947598 2741865 LJ1828 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965807.1 1946864 R 257314 CDS NP_965808.1 42519878 2742229 1947903..1949213 1 NC_005362.1 contains uracil-xanthine permease domain; hypothetical protein 1949213 2742229 LJ1829 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965808.1 1947903 D 257314 CDS NP_965809.1 42519879 2742191 1949566..1950879 1 NC_005362.1 contains uracil-xanthine permease domain; hypothetical protein 1950879 2742191 LJ1830 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965809.1 1949566 D 257314 CDS NP_965810.1 42519880 2741884 1950987..1951472 1 NC_005362.1 contains transcriptional regulator helix-turn-helix domain; hypothetical protein 1951472 2741884 LJ1831 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965810.1 1950987 D 257314 CDS NP_965811.1 42519881 2742553 1951537..1951950 1 NC_005362.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 1951950 2742553 LJ1832 Lactobacillus johnsonii NCC 533 peptide deformylase NP_965811.1 1951537 D 257314 CDS NP_965812.1 42519882 2741879 complement(1952032..1952577) 1 NC_005362.1 hypothetical protein 1952577 2741879 LJ1833 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965812.1 1952032 R 257314 CDS NP_965813.1 42519883 2743688 complement(1952599..1953156) 1 NC_005362.1 hypothetical protein 1953156 2743688 LJ1834 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965813.1 1952599 R 257314 CDS NP_965814.1 42519884 2742344 1953314..1953748 1 NC_005362.1 CopAB ATPase metal-fist type repressor 1953748 2742344 LJ1835 Lactobacillus johnsonii NCC 533 CopAB ATPase metal-fist type repressor NP_965814.1 1953314 D 257314 CDS NP_965815.1 42519885 2741868 1953761..1954138 1 NC_005362.1 hypothetical protein 1954138 2741868 LJ1836 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965815.1 1953761 D 257314 CDS NP_965816.1 42519886 2741902 1954156..1954443 1 NC_005362.1 hypothetical protein 1954443 2741902 LJ1837 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965816.1 1954156 D 257314 CDS NP_965817.1 42519887 2742642 1954443..1956368 1 NC_005362.1 cation-transporting ATPase PacS 1956368 2742642 LJ1838 Lactobacillus johnsonii NCC 533 cation-transporting ATPase PacS NP_965817.1 1954443 D 257314 CDS NP_965818.1 42519888 2743505 1956573..1962017 1 NC_005362.1 contains gram positive anchor domain; hypothetical protein 1962017 2743505 LJ1839 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965818.1 1956573 D 257314 CDS NP_965819.1 42519889 2743645 complement(1962122..1968751) 1 NC_005362.1 cell wall-associated serine proteinase 1968751 2743645 LJ1840 Lactobacillus johnsonii NCC 533 cell wall-associated serine proteinase NP_965819.1 1962122 R 257314 CDS NP_965820.1 42519890 2743532 1969039..1969935 1 NC_005362.1 cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein; peptidylprolyl isomerase 1969935 prsA 2743532 prsA Lactobacillus johnsonii NCC 533 peptidylprolyl isomerase NP_965820.1 1969039 D 257314 CDS NP_965821.1 42519891 2742386 complement(1970494..1971975) 1 NC_005362.1 amino acid transporter 1971975 2742386 LJ1842 Lactobacillus johnsonii NCC 533 amino acid transporter NP_965821.1 1970494 R 257314 CDS NP_965822.1 42519892 2743451 1972219..1974318 1 NC_005362.1 ornithine decarboxylase 1974318 2743451 LJ1843 Lactobacillus johnsonii NCC 533 ornithine decarboxylase NP_965822.1 1972219 D 257314 CDS NP_965823.1 42519893 2743556 1974321..1975589 1 NC_005362.1 contains cystathionine beta-lyase/cystathionine gamma-synthase domain; hypothetical protein 1975589 2743556 LJ1844 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965823.1 1974321 D 257314 CDS NP_965824.1 42519894 2743552 complement(1975660..1976073) 1 NC_005362.1 contains acetyltransferase (GNAT) domain; hypothetical protein 1976073 2743552 LJ1845 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965824.1 1975660 R 257314 CDS NP_965825.1 42519895 2743509 1976338..1977681 1 NC_005362.1 major facilitator superfamily permease 1977681 2743509 LJ1846 Lactobacillus johnsonii NCC 533 major facilitator superfamily permease NP_965825.1 1976338 D 257314 CDS NP_965826.1 42519896 2743447 1977736..1978134 1 NC_005362.1 hypothetical protein 1978134 2743447 LJ1847 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965826.1 1977736 D 257314 CDS NP_965827.1 42519897 2742389 complement(1978287..1979879) 1 NC_005362.1 ABC transporter ATPase component 1979879 2742389 LJ1848 Lactobacillus johnsonii NCC 533 ABC transporter ATPase component NP_965827.1 1978287 R 257314 CDS NP_965828.1 42519898 2743090 1980275..1982137 1 NC_005362.1 contains DNA mutS mismatch repair domain; hypothetical protein 1982137 2743090 LJ1850 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965828.1 1980275 D 257314 CDS NP_965829.1 42519899 2742382 complement(1982223..1983776) 1 NC_005362.1 similar to chloride channel protein EriC; hypothetical protein 1983776 2742382 LJ1851 Lactobacillus johnsonii NCC 533 hypothetical protein NP_965829.1 1982223 R 257314 CDS NP_965830.1 42519900 2743095 complement(1983876..1985264) 1 NC_005362.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 1985264 2743095 LJ1852 Lactobacillus johnsonii NCC 533 6-phosphogluconate dehydrogenase NP_965830.1 1983876 R 257314 CDS NP_965831.1 42519901 2743574 complement(1985410..1987110) 1 NC_005362.1 pyruvate oxidase 1987110 2743574 LJ1853 Lactobacillus johnsonii NCC 533 pyruvate oxidase NP_965831.1 1985410 R 257314 CDS NP_965832.1 42519902 2743113 complement(1987355..1989253) 1 NC_005362.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 1989253 2743113 LJ1854 Lactobacillus johnsonii NCC 533 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA NP_965832.1 1987355 R 257314 CDS NP_965833.1 42519903 2743152 complement(1989261..1990646) 1 NC_005362.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 1990646 trmE 2743152 trmE Lactobacillus johnsonii NCC 533 tRNA modification GTPase TrmE NP_965833.1 1989261 R 257314 CDS NP_965834.1 42519904 2743162 complement(1990757..1991632) 1 NC_005362.1 stage III sporulation protein J precursor 1991632 2743162 LJ1856 Lactobacillus johnsonii NCC 533 stage III sporulation protein J precursor NP_965834.1 1990757 R 257314 CDS NP_965835.1 42519905 2743126 complement(1991634..1992002) 1 NC_005362.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 1992002 rnpA 2743126 rnpA Lactobacillus johnsonii NCC 533 ribonuclease P NP_965835.1 1991634 R 257314 CDS