-- dump date 20140619_120423 -- class Genbank::CDS -- table cds_note -- id note YP_003145192.1 KEGG: pmr:PMI3132 chromosomal replication initiator protein; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; SMART: Chromosomal replication initiator DnaA domain; AAA ATPase YP_003145193.1 KEGG: pfl:PFL_0002 DNA polymerase III subunit beta; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; SMART: DNA polymerase III beta chain YP_003145194.1 TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein; KEGG: sdn:Sden_0003 DNA replication and repair protein RecF YP_003145195.1 KEGG: son:SO_0011 DNA gyrase, B subunit; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; DNA gyrase subunit B domain protein; TOPRIM domain protein; ATP-binding region ATPase domain protein; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein YP_003145196.1 PFAM: protein of unknown function DUF344; KEGG: pat:Patl_0210 hypothetical protein YP_003145197.1 PFAM: protein of unknown function DUF1458; KEGG: jan:Jann_3624 hypothetical protein YP_003145198.1 PFAM: protein of unknown function DUF853 NPT hydrolase putative; KEGG: cja:CJA_1322 hypothetical protein YP_003145199.1 PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: aeh:Mlg_1571 type II secretion system protein E YP_003145200.1 PFAM: protein of unknown function DUF526; KEGG: amc:MADE_00075 hypothetical protein YP_003145201.1 PFAM: Invasion gene expression up-regulator SirB; KEGG: cja:CJA_2198 hypothetical protein YP_003145202.1 PFAM: protein of unknown function UPF0029; KEGG: eca:ECA0210 hypothetical protein YP_003145203.1 catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters YP_003145204.1 includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids YP_003145205.1 FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids YP_003145207.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: aba:Acid345_1456 glyoxalase/bleomycin resistance protein/dioxygenase YP_003145208.1 TIGRFAM: ATP-dependent DNA helicase Rep; PFAM: UvrD/REP helicase; KEGG: ppr:PBPRA0091 putative ATP-dependent DNA helicase Rep YP_003145209.1 PFAM: beta-lactamase domain protein; KEGG: pat:Patl_0946 beta-lactamase-like YP_003145210.1 KEGG: ilo:IL0173 RND superfamily exporter YP_003145211.1 KEGG: ilo:IL0172 outer membrane protein YP_003145212.1 KEGG: ilo:IL0171 hypothetical protein YP_003145213.1 KEGG: sbp:Sbal223_1582 hypothetical protein YP_003145214.1 PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: ilo:IL1695 rhodanese-related sulfurtransferase YP_003145215.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: vch:VC0678 transcriptional activator HlyU YP_003145216.1 PFAM: aminotransferase class V; KEGG: acp:A2cp1_3497 aminotransferase class V YP_003145217.1 KEGG: pat:Patl_3305 hypothetical protein YP_003145218.1 KEGG: sdn:Sden_0569 hypothetical protein YP_003145219.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: sdn:Sden_0568 sigma-70, region 4 type 2 YP_003145220.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: sdn:Sden_0567 peptidase S8 and S53, subtilisin, kexin, sedolisin YP_003145221.1 KEGG: sdn:Sden_0566 hypothetical protein YP_003145222.1 KEGG: GH18720 gene product from transcript GH18720- RA YP_003145223.1 PFAM: TnsA endonuclease; KEGG: pca:Pcar_0126 hypothetical protein YP_003145224.1 PFAM: Transposase-like Mu; KEGG: pca:Pcar_0125 hypothetical protein YP_003145225.1 PFAM: TniB family protein; KEGG: pca:Pcar_0124 putative NTP-binding protein TniB YP_003145226.1 KEGG: pca:Pcar_0123 hypothetical protein YP_003145227.1 KEGG: tcx:Tcr_1640 hypothetical protein YP_003145229.1 PFAM: Proprotein convertase P; KEGG: shl:Shal_2523 proprotein convertase P YP_003145230.1 KEGG: slo:Shew_1751 hypothetical protein YP_003145231.1 KEGG: shn:Shewana3_2190 hypothetical protein YP_003145232.1 KEGG: shn:Shewana3_2189 hypothetical protein YP_003145233.1 KEGG: shn:Shewana3_2188 hypothetical protein YP_003145234.1 KEGG: shn:Shewana3_2187 hypothetical protein YP_003145235.1 KEGG: shn:Shewana3_2186 type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit-like protein YP_003145238.1 PFAM: MT-A70 family protein; KEGG: mgm:Mmc1_2604 MT-A70 family protein YP_003145239.1 KEGG: cak:Caul_0393 hypothetical protein YP_003145241.1 PFAM: protein of unknown function DUF955; KEGG: bac:BamMC406_6746 hypothetical protein YP_003145244.1 KEGG: mpo:Mpop_4134 hypothetical protein YP_003145245.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: bvi:Bcep1808_0170 UBA/ThiF-type NAD/FAD binding protein YP_003145246.1 KEGG: mpo:Mpop_4132 hypothetical protein YP_003145247.1 KEGG: bja:blr2115 hypothetical protein YP_003145248.1 KEGG: abm:p2ABSDF0006 hypothetical protein YP_003145250.1 KEGG: slo:Shew_2272 hypothetical protein YP_003145251.1 PFAM: protein of unknown function DUF1508; KEGG: swp:swp_4485 hypothetical protein YP_003145252.1 PFAM: 5 nucleotidase deoxy cytosolic type C; KEGG: sbl:Sbal_1137 hypothetical protein YP_003145253.1 KEGG: ngk:NGK_1159 plasmid maintenance system antidote protein, XRE family YP_003145256.1 KEGG: pst:PSPTO_0046 hypothetical protein YP_003145257.1 PFAM: UvrD/REP helicase; KEGG: pst:PSPTO_0047 UvrD/REP helicase family protein YP_003145258.1 KEGG: pcr:Pcryo_1121 hypothetical protein YP_003145259.1 KEGG: glo:Glov_2515 hypothetical protein YP_003145262.1 PFAM: magnesium chelatase ChlI subunit; KEGG: asa:ASA_0118 ComM-related protein YP_003145265.1 KEGG: aha:AHA_1992 hypothetical protein YP_003145266.1 KEGG: pat:Patl_1529 hypothetical protein YP_003145267.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: sse:Ssed_2589 sensor histidine kinase YP_003145268.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sse:Ssed_2590 two component transcriptional regulator YP_003145269.1 KEGG: saz:Sama_3637 hypothetical protein YP_003145270.1 KEGG: afw:Anae109_4141 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_003145272.1 KEGG: pin:Ping_2916 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_003145273.1 KEGG: pin:Ping_3000 hypothetical protein YP_003145274.1 KEGG: pin:Ping_2999 hypothetical protein YP_003145275.1 KEGG: dar:Daro_3622 hypothetical protein YP_003145276.1 PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: sus:Acid_1594 GntR family transcriptional regulator YP_003145277.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sus:Acid_3750 ABC transporter related YP_003145278.1 KEGG: cja:CJA_0604 ABC-2 type transporter YP_003145279.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: afw:Anae109_0952 peptidase S9 prolyl oligopeptidase YP_003145280.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: mmw:Mmwyl1_0985 DEAD/DEAH box helicase domain- containing protein YP_003145281.1 PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR; KEGG: ilo:IL0801 MerR family transcriptional regulator YP_003145282.1 PFAM: GCN5-related N-acetyltransferase; KEGG: tmz:Tmz1t_0731 carbonate dehydratase YP_003145284.1 SMART: helix-turn-helix domain protein; KEGG: glo:Glov_0100 transcriptional regulator, XRE family YP_003145285.1 PFAM: beta-lactamase; KEGG: sus:Acid_5823 beta-lactamase YP_003145286.1 PFAM: beta-lactamase; KEGG: bbt:BBta_4003 hypothetical protein YP_003145287.1 PFAM: beta-lactamase; KEGG: slo:Shew_3058 beta-lactamase YP_003145288.1 PFAM: beta-lactamase; KEGG: cak:Caul_3207 beta-lactamase YP_003145289.1 TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: pin:Ping_2142 catalase/peroxidase HPI YP_003145290.1 KEGG: sdn:Sden_1576 hypothetical protein YP_003145291.1 KEGG: sfr:Sfri_3708 hypothetical protein YP_003145292.1 PFAM: cytochrome B561; KEGG: abo:ABO_0058 cytochrome b561, putative YP_003145295.1 KEGG: rfr:Rfer_1769 hypothetical protein YP_003145296.1 PFAM: protein of unknown function DUF1287; KEGG: swd:Swoo_4263 hypothetical protein YP_003145297.1 PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: nmu:Nmul_A0938 GreA/GreB family elongation factor YP_003145298.1 KEGG: tgr:Tgr7_0837 hypothetical protein YP_003145299.1 KEGG: ilo:IL0298 signal protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_003145301.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: cps:CPS_3116 PhzF family phenazine biosynthesis protein YP_003145303.1 PFAM: NADPH-dependent FMN reductase; KEGG: abo:ABO_1539 hypothetical protein YP_003145304.1 KEGG: ppr:PBPRB0205 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_003145305.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: hch:HCH_06855 cation transport ATPase YP_003145306.1 KEGG: pfl:PFL_1403 sensory box-containing diguanylate cyclase, putative; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; GAF domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: GGDEF domain containing protein; GAF domain protein; PAS domain containing protein YP_003145307.1 PFAM: TspO/MBR family protein; KEGG: csa:Csal_0168 TspO and MBR like proteins YP_003145308.1 PFAM: protein of unknown function DUF204; KEGG: cps:CPS_3146 hypothetical protein YP_003145309.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; KEGG: dal:Dalk_1837 protein of unknown function DUF21 YP_003145310.1 KEGG: swd:Swoo_2989 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; Tetratricopeptide domain protein YP_003145311.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: slo:Shew_1909 2OG-Fe(II) oxygenase YP_003145312.1 CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis YP_003145313.1 KEGG: dds:Ddes_1266 hypothetical protein YP_003145314.1 KEGG: pha:PSHAa0070 hypothetical protein YP_003145315.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_003145316.1 PFAM: FAD dependent oxidoreductase; KEGG: tcx:Tcr_0147 FAD dependent oxidoreductase YP_003145317.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: tcx:Tcr_0146 thiamine biosynthesis protein ThiS YP_003145318.1 PFAM: thiazole biosynthesis family protein; KEGG: pat:Patl_1934 thiazole synthase YP_003145319.1 TIGRFAM: thiamine-phosphate pyrophosphorylase; phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; thiamine monophosphate synthase; KEGG: lpp:lpp1526 hypothetical protein YP_003145320.1 SMART: Rhodanese domain protein; KEGG: bca:BCE_0869 rhodanese-like domain-containing protein YP_003145321.1 PFAM: membrane-flanked domain; KEGG: eli:ELI_13595 hypothetical protein YP_003145322.1 PFAM: membrane-flanked domain; KEGG: xcv:XCV3918 hypothetical protein YP_003145323.1 KEGG: amc:MADE_00066 2-amino-3-ketobutyrate coenzyme A ligase; TIGRFAM: 2-amino-3-ketobutyrate coenzyme A ligase; PFAM: aminotransferase class I and II; glycine hydroxymethyltransferase; aminotransferase class-III; aminotransferase class V YP_003145324.1 TIGRFAM: L-threonine 3-dehydrogenase; PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: shn:Shewana3_4105 L-threonine 3-dehydrogenase YP_003145325.1 PFAM: GCN5-related N-acetyltransferase; KEGG: lpn:lpg2454 acetyltransferase YP_003145326.1 PFAM: Rhomboid family protein; KEGG: ilo:IL0267 membrane serine peptidase YP_003145327.1 PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: psb:Psyr_4630 thiosulfate sulfurtransferase YP_003145328.1 KEGG: vha:VIBHAR_06435 hypothetical protein YP_003145329.1 TIGRFAM: alkyl hydroperoxide reductase, F subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; HI0933 family protein; KEGG: abo:ABO_2430 alkyl hydroperoxide reductase subunit F YP_003145330.1 KEGG: amc:MADE_01774 peroxiredoxin; TIGRFAM: peroxiredoxin; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein YP_003145331.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: vpa:VPA0456 putative transcriptional regulator YP_003145332.1 PFAM: Chorismate lyase; KEGG: pat:Patl_0066 chorismate lyase YP_003145333.1 TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; KEGG: aha:AHA_0181 4-hydroxybenzoate octaprenyltransferase YP_003145334.1 KEGG: psa:PST_2703 glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase YP_003145335.1 TIGRFAM: pyridoxal-dependent decarboxylase, exosortase system type 1 associated; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: aeh:Mlg_0126 Orn/DAP/Arg decarboxylase 2 YP_003145336.1 TIGRFAM: acyl-CoA ligase (AMP-forming), exosortase system type 1 associated; PFAM: AMP-dependent synthetase and ligase; KEGG: net:Neut_1417 AMP-dependent synthetase and ligase YP_003145337.1 PFAM: VanZ family protein; KEGG: sus:Acid_2563 hypothetical protein YP_003145338.1 KEGG: eba:ebA2872 hypothetical protein YP_003145339.1 KEGG: bcn:Bcen_4976 hypothetical protein YP_003145340.1 KEGG: rma:Rmag_1071 ribulose-5-phosphate 3- epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase YP_003145341.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: sde:Sde_0752 anthranilate synthase, component II YP_003145342.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: sde:Sde_0755 cAMP-regulatory protein YP_003145343.1 PFAM: OsmC family protein; KEGG: pat:Patl_4022 OsmC-like protein YP_003145344.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: tgr:Tgr7_2795 glyoxalase/bleomycin resistance protein/dioxygenase YP_003145345.1 KEGG: sde:Sde_0104 putative membrane protein YP_003145346.1 TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: ilo:IL1414 catalase YP_003145347.1 PFAM: cytochrome c class I; KEGG: gbe:GbCGDNIH1_0712 cytochrome c oxidase assembly protein CtaG YP_003145348.1 KEGG: dol:Dole_2295 hypothetical protein YP_003145349.1 TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5-dehydrogenase; KEGG: nmc:NMC1810 shikimate dehydrogenase YP_003145350.1 PFAM: Na+/H+ antiporter NhaC; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: noc:Noc_2134 Na+/H+ antiporter NhaC YP_003145351.1 KEGG: spe:Spro_4559 hypothetical protein YP_003145352.1 KEGG: sbp:Sbal223_2466 hypothetical protein YP_003145354.1 PFAM: HemY domain protein; KEGG: hch:HCH_00288 uncharacterized enzyme of heme biosynthesis YP_003145355.1 PFAM: protein of unknown function DUF513 hemX; KEGG: spe:Spro_0176 putative uroporphyrinogen III C- methyltransferase YP_003145356.1 PFAM: Uroporphyrinogen III synthase HEM4; KEGG: vsp:VS_3053 uroporphyrinogen-III synthase YP_003145357.1 KEGG: saz:Sama_3254 porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase YP_003145358.1 PFAM: response regulator receiver; LytTr DNA- binding region; SMART: response regulator receiver; KEGG: tgr:Tgr7_0031 response regulator receiver protein YP_003145359.1 PFAM: histidine kinase internal region; KEGG: maq:Maqu_0489 histidine kinase internal region YP_003145360.1 KEGG: mms:mma_3234 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein YP_003145361.1 PFAM: phospholipase/Carboxylesterase; KEGG: pat:Patl_0345 carboxylesterase YP_003145362.1 TIGRFAM: iron donor protein CyaY; PFAM: Frataxin family protein; KEGG: ecf:ECH74115_5245 iron donor protein CyaY YP_003145363.1 KEGG: pen:PSEEN5364 lipoprotein Lppl YP_003145364.1 KEGG: hch:HCH_00298 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase YP_003145365.1 PFAM: protein of unknown function DUF484; KEGG: noc:Noc_0317 hypothetical protein YP_003145366.1 TIGRFAM: tyrosine recombinase XerC; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: pmu:PM1701 site-specific tyrosine recombinase XerC YP_003145367.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: yen:YE0195 flavin mononucleotide phosphatase YP_003145369.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: pfo:Pfl01_4711 glycerate dehydrogenase YP_003145370.1 KEGG: reu:Reut_A0272 4-oxalocrotonate decarboxylase YP_003145371.1 PFAM: UvrD/REP helicase; KEGG: yen:YE0196 DNA-dependent helicase II YP_003145372.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; protease-associated PA domain protein; peptidase domain protein; proteinase inhibitor I9 subtilisin propeptide; KEGG: cps:CPS_0751 cold-active alkaline serine protease YP_003145373.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; PKD domain containing protein; protease- associated PA domain protein; SMART: PKD domain containing protein; KEGG: slo:Shew_2720 peptidase S8 and S53, subtilisin, kexin, sedolisin YP_003145374.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; protease-associated PA domain protein; KEGG: sdn:Sden_3290 peptidase S8 and S53, subtilisin, kexin, sedolisin YP_003145375.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: swd:Swoo_3530 peptidase S8 and S53 subtilisin kexin sedolisin YP_003145376.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: swd:Swoo_3530 peptidase S8 and S53 subtilisin kexin sedolisin YP_003145377.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: pha:PSHAa0187 hypothetical protein YP_003145378.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: tcx:Tcr_2011 TRAP dicarboxylate transporter- DctP subunit YP_003145379.1 KEGG: psa:PST_3179 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu/hydantoin racemase YP_003145380.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ppr:PBPRA1404 C4 dicarboxylate transporter permease YP_003145381.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: hch:HCH_00747 TRAP-type mannitol/chloroaromatic compound transport system, small permease component YP_003145382.1 PFAM: beta-lactamase; KEGG: pat:Patl_2539 serine-type D-Ala-D-Ala carboxypeptidase YP_003145383.1 PFAM: TfoX domain protein; KEGG: bcn:Bcen_1437 TfoX-like YP_003145384.1 KEGG: cco:CCC13826_2027 pTet43 YP_003145386.1 KEGG: maq:Maqu_1072 hypothetical protein YP_003145387.1 KEGG: ppw:PputW619_2281 hypothetical protein YP_003145388.1 KEGG: gdj:Gdia_1729 hypothetical protein YP_003145389.1 KEGG: gdj:Gdia_1730 hypothetical protein YP_003145390.1 KEGG: sde:Sde_3081 hypothetical protein YP_003145391.1 PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: sde:Sde_3080 serine/threonine protein kinase YP_003145393.1 KEGG: shm:Shewmr7_2745 hypothetical protein YP_003145394.1 PFAM: band 7 protein; SMART: band 7 protein; KEGG: hch:HCH_01496 membrane protease subunit stomatin/prohibitin-like protein YP_003145395.1 PFAM: protein of unknown function DUF107; KEGG: net:Neut_2369 hypothetical protein YP_003145396.1 PFAM: Fe(II) trafficking protein YggX; KEGG: lch:Lcho_2229 Fe(II) trafficking protein YggX YP_003145397.1 KEGG: son:SO_3368 A/G-specific adenine glycosylase; TIGRFAM: A/G-specific adenine glycosylase; PFAM: HhH-GPD family protein; helix-hairpin-helix motif; SMART: HhH-GPD family protein; iron-sulfur cluster loop YP_003145398.1 PFAM: TrkA-C domain protein; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: sfr:Sfri_0290 TrkA-C domain protein YP_003145399.1 KEGG: pat:Patl_0078 tRNA (guanine-N(7)-)- methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: putative methyltransferase YP_003145400.1 PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: hne:HNE_0979 hypothetical protein YP_003145401.1 KEGG: pfo:Pfl01_5327 coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003145402.1 TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; KEGG: vpa:VP2621 putative deoxyribonucleotide triphosphate pyrophosphatase YP_003145403.1 KEGG: shl:Shal_1168 hypothetical protein YP_003145404.1 PFAM: protein of unknown function YGGT; KEGG: ilo:IL1976 hypothetical protein YP_003145405.1 KEGG: vfm:VFMJ11_0429 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent YP_003145406.1 PFAM: alanine racemase domain protein; KEGG: bmv:BMASAVP1_A0328 hypothetical protein YP_003145407.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: pmy:Pmen_4149 twitching motility protein YP_003145408.1 KEGG: pag:PLES_03941 twitching motility protein PilU; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase YP_003145409.1 PFAM: EAL domain protein; SMART: EAL domain protein; KEGG: tdn:Suden_2003 diguanylate cyclase/phosphodiesterase YP_003145410.1 PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: esa:ESA_00393 Holliday junction resolvase- like protein YP_003145411.1 PFAM: protein of unknown function DUF179; KEGG: cps:CPS_1252 hypothetical protein YP_003145412.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: pap:PSPA7_0506 hypothetical protein YP_003145413.1 KEGG: cps:CPS_1253 glutathione synthetase; TIGRFAM: glutathione synthetase; PFAM: glutathione synthetase ATP-binding; RimK domain protein ATP-grasp; glutathione synthetase domain protein YP_003145414.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: maq:Maqu_3767 response regulator receiver protein YP_003145415.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: pfl:PFL_5826 type IV pilus response regulator PilH YP_003145416.1 PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: abo:ABO_0107 type IV pili signal transduction protein PilI YP_003145417.1 PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: hch:HCH_00543 methyl-accepting chemotaxis protein YP_003145418.1 KEGG: hch:HCH_00542 methylase of chemotaxis methyl- accepting protein; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type YP_003145419.1 PFAM: response regulator receiver; CheW domain protein; Hpt domain protein; Signal transducing histidine kinase homodimeric; ATP-binding region ATPase domain protein; SMART: response regulator receiver; Hpt domain protein; CheW domain protein; ATP-binding region ATPase domain protein; KEGG: abo:ABO_0104 two-component hybrid chemotactic sensor and regulator, putative YP_003145420.1 PFAM: CheB methylesterase; KEGG: hch:HCH_00540 chemotaxis response regulator YP_003145421.1 PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: cja:CJA_0072 hypothetical protein YP_003145422.1 PFAM: protein of unknown function DUF558; KEGG: slo:Shew_3224 hypothetical protein YP_003145423.1 TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: hch:HCH_01529 adenosylmethionine--8-amino-7- oxononanoate transaminase YP_003145424.1 KEGG: vha:VIBHAR_02671 hypothetical protein YP_003145425.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_003145426.1 KEGG: mmw:Mmwyl1_4320 methionine adenosyltransferase; TIGRFAM: S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase YP_003145427.1 PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: pca:Pcar_0515 ion transport protein YP_003145428.1 KEGG: bam:Bamb_1428 chitinase YP_003145429.1 KEGG: maq:Maqu_0075 hypothetical protein YP_003145430.1 KEGG: pfo:Pfl01_5108 putative ubiquinone biosynthesis protein YP_003145431.1 PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: hch:HCH_06139 ATPase of the AAA+ class YP_003145432.1 PFAM: Glutathione S-transferase domain; KEGG: sbp:Sbal223_3637 glutathione S-transferase domain protein YP_003145433.1 PFAM: conserved hypothetical protein; KEGG: pat:Patl_2138 hypothetical protein YP_003145434.1 KEGG: pmy:Pmen_3337 hypothetical protein YP_003145435.1 KEGG: ilo:IL1247 hypothetical protein YP_003145436.1 KEGG: vvy:VV3143 phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylamine/glycine ligase; PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201 YP_003145437.1 KEGG: vch:VC0276 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme formylation region; MGS domain protein; SMART: AICARFT/IMPCHase bienzyme formylation region YP_003145438.1 PFAM: helix-turn-helix Fis-type; KEGG: vsp:VS_2948 putative factor-for-inversion stimulation protein YP_003145439.1 TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; KEGG: amc:MADE_03937 tRNA-dihydrouridine synthase B YP_003145440.1 TIGRFAM: MJ0042 family finger-like protein; KEGG: neu:NE0655 hypothetical protein YP_003145441.1 TIGRFAM: ribosomal protein L11 methyltransferase; PFAM: ribosomal L11 methyltransferase; Methyltransferase type 11; methyltransferase small; Methyltransferase type 12; KEGG: swp:swp_0427 ribosomal protein L11 methyltransferase YP_003145442.1 KEGG: ppr:PBPRA1793 hypothetical protein YP_003145443.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; biotin carboxylase domain protein; phosphoribosylglycinamide synthetase; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: vco:VC0395_A2688 acetyl-CoA carboxylase biotin carboxylase subunit YP_003145444.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: asu:Asuc_0642 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit YP_003145445.1 KEGG: sml:Smlt4239 putative 3-dehydroquinate dehydratase; TIGRFAM: 3-dehydroquinate dehydratase, type II; PFAM: dehydroquinase class II YP_003145446.1 PFAM: transcriptional regulator domain protein; KEGG: hch:HCH_05008 response regulator YP_003145447.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dvm:DvMF_1807 protein of unknown function DUF6 transmembrane YP_003145449.1 PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: tgr:Tgr7_0372 protein-disulfide reductase YP_003145450.1 PFAM: ApbE family lipoprotein; KEGG: lch:Lcho_1651 ApbE family lipoprotein YP_003145451.1 KEGG: pat:Patl_0575 hypothetical protein YP_003145452.1 KEGG: pat:Patl_0576 putative lipoprotein YP_003145453.1 PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Thioredoxin domain; KEGG: cps:CPS_2790 putative electron transfer protein YP_003145454.1 PFAM: CutA1 divalent ion tolerance protein; KEGG: noc:Noc_1056 CutA1 divalent ion tolerance protein YP_003145455.1 PFAM: FxsA cytoplasmic membrane protein; KEGG: son:SO_0698 FxsA protein YP_003145456.1 PFAM: chaperonin Cpn10; KEGG: mca:MCA0706 co-chaperonin GroES YP_003145457.1 TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: spe:Spro_0409 chaperonin GroEL YP_003145459.1 KEGG: swd:Swoo_0730 hypothetical protein YP_003145460.1 PFAM: carbonic anhydrase; KEGG: asa:ASA_3957 carbonic anhydrase YP_003145462.1 PFAM: OmpA/MotB domain protein; KEGG: cja:CJA_1142 OmpA family protein YP_003145463.1 TIGRFAM: thioesterase domain protein; KEGG: hch:HCH_01171 histone acetyltransferase HPA2- like acetyltransferase YP_003145464.1 PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: swd:Swoo_3319 von Willebrand factor type A YP_003145465.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: sfr:Sfri_1078 RNA polymerase, sigma-24 subunit, ECF subfamily YP_003145466.1 KEGG: slo:Shew_1232 hypothetical protein YP_003145467.1 TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome C oxidase subunit II transmembrane region; cytochrome c class I; KEGG: maq:Maqu_0062 cytochrome c oxidase, subunit II YP_003145468.1 KEGG: amc:MADE_04012 cytochrome c oxidase, subunit I; TIGRFAM: cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I YP_003145469.1 PFAM: cytochrome c oxidase assembly protein CtaG/Cox11; KEGG: amc:MADE_04011 cytochrome c oxidase assembly protein YP_003145470.1 PFAM: cytochrome c oxidase subunit III; KEGG: abo:ABO_1897 cytochrome c oxidase, subunit III YP_003145471.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: ilo:IL0759 putative hydroxylase YP_003145472.1 KEGG: ilo:IL0760 hypothetical protein YP_003145473.1 KEGG: pin:Ping_2533 hypothetical protein YP_003145474.1 PFAM: alpha/beta hydrolase fold; KEGG: hch:HCH_00189 hydrolase of the alpha/beta- hydrolase fold YP_003145475.1 KEGG: maq:Maqu_3785 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003145476.1 KEGG: maq:Maqu_3785 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003145477.1 KEGG: maq:Maqu_3785 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003145478.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: aeh:Mlg_1970 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 YP_003145479.1 KEGG: tgr:Tgr7_0987 NADH-quinone oxidoreductase, B subunit; TIGRFAM: NADH-quinone oxidoreductase, B subunit; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit YP_003145480.1 KEGG: noc:Noc_2563 NADH (or F420H2) dehydrogenase, subunit C; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit YP_003145481.1 Catalyzes the transfer of electrons from NADH to quinone YP_003145482.1 TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: cbc:CbuK_0589 NADH-quinone oxidoreductase chain E YP_003145483.1 KEGG: lpc:LPC_3070 NADH dehydrogenase I, F subunit; TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit YP_003145484.1 TIGRFAM: NADH-quinone oxidoreductase, chain G; PFAM: molybdopterin oxidoreductase; ferredoxin; KEGG: noc:Noc_2559 NADH dehydrogenase subunit G YP_003145485.1 PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: noc:Noc_2558 respiratory-chain NADH dehydrogenase, subunit 1 YP_003145486.1 Catalyzes the transfer of electrons from NADH to quinone YP_003145487.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: nmu:Nmul_A1100 NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 YP_003145488.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: nmu:Nmul_A1101 NADH-ubiquinone oxidoreductase, chain 4L YP_003145489.1 KEGG: aeh:Mlg_1959 proton-translocating NADH- quinone oxidoreductase, chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein YP_003145490.1 KEGG: tgr:Tgr7_0998 proton-translocating NADH- quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I) YP_003145491.1 KEGG: tgr:Tgr7_0999 proton-translocating NADH- quinone oxidoreductase, chain N; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I) YP_003145492.1 PFAM: protein of unknown function DUF150; KEGG: hch:HCH_01237 hypothetical protein YP_003145493.1 KEGG: pha:PSHAa0996 transcription elongation factor NusA; TIGRFAM: transcription termination factor NusA; PFAM: NusA domain protein; RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; KH domain protein YP_003145494.1 TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; Initiation factor 2 associated domain protein; elongation factor Tu domain 2 protein; translation initiation factor IF-2 domain protein; KEGG: vpa:VP2456 translation initiation factor IF-2 YP_003145495.1 TIGRFAM: ribosome-binding factor A; PFAM: ribosome-binding factor A; KEGG: psa:PST_3309 ribosome-binding factor A YP_003145496.1 TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; tRNA pseudouridine synthase B; KEGG: aha:AHA_3301 tRNA pseudouridine synthase B YP_003145497.1 KEGG: ilo:IL0687 alpha/beta fold family hydrolase YP_003145498.1 TIGRFAM: ribosomal protein S15; PFAM: ribosomal protein S15; KEGG: vsp:VS_2479 similar to ribosomal protein S15 YP_003145499.1 KEGG: vvy:VV2697 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; RNA binding S1 domain protein; Exoribonuclease, phosphorolytic domain 2; KH type 1 domain protein; SMART: RNA binding S1 domain protein; KH domain protein YP_003145500.1 PFAM: peptidase M4 thermolysin; Peptidase M4 thermolysin; Propeptide peptidase M4 and M36; peptidase domain protein; Propeptide PepSY amd peptidase M4; KEGG: aha:AHA_0851 elastase YP_003145502.1 PFAM: YceI family protein; KEGG: slo:Shew_2223 YceI family protein YP_003145503.1 PFAM: Na+/solute symporter; KEGG: azo:azo0375 sodium/solute symporter transmembrane protein YP_003145504.1 KEGG: amc:MADE_02230 tRNA-i(6)A37 thiotransferase enzyme MiaB; TIGRFAM: tRNA-i(6)A37 thiotransferase enzyme MiaB; RNA modification enzyme, MiaB family; PFAM: Protein of unknown function UPF0004; Radical SAM domain protein; deoxyribonuclease/rho motif-related TRAM; SMART: Elongator protein 3/MiaB/NifB YP_003145505.1 PFAM: PhoH family protein; KEGG: ilo:IL0942 phosphate starvation-inducible protein PhoH YP_003145506.1 PFAM: protein of unknown function UPF0054; KEGG: sdn:Sden_0813 putative metalloprotease YP_003145507.1 PFAM: CBS domain containing protein; transporter- associated region; SMART: CBS domain containing protein; KEGG: tgr:Tgr7_2289 Mg2+/Co2+ transporter YP_003145508.1 TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: psa:PST_3765 apolipoprotein N-acyltransferase YP_003145512.1 TIGRFAM: leucyl-tRNA synthetase; KEGG: vch:VC0956 leucyl-tRNA synthetase YP_003145513.1 KEGG: mfa:Mfla_2156 rare lipoprotein B YP_003145514.1 TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: tgr:Tgr7_2277 DNA-directed DNA polymerase YP_003145515.1 KEGG: hch:HCH_05846 nicotinate (nicotinamide) nucleotide adenylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase YP_003145516.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: hch:HCH_05845 hypothetical protein YP_003145517.1 PFAM: protein of unknown function DUF163; KEGG: vha:VIBHAR_01218 SPOUT methyltransferase superfamily protein YP_003145518.1 KEGG: slo:Shew_2935 peptidoglycan glycosyltransferase; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain YP_003145519.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: swp:swp_3923 rod shape-determining protein RodA YP_003145520.1 TIGRFAM: lytic murein transglycosylase B; KEGG: ilo:IL0955 membrane-bound lytic murein transglycosylase B YP_003145521.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; KEGG: hch:HCH_05840 lipoprotein YP_003145522.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: sfr:Sfri_0695 serine-type D-Ala-D-Ala carboxypeptidase YP_003145523.1 PFAM: aminotransferase class IV; KEGG: tgr:Tgr7_2706 D-amino-acid transaminase YP_003145524.1 PFAM: protein of unknown function DUF493; KEGG: ilo:IL0958 hypothetical protein YP_003145525.1 TIGRFAM: lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; KEGG: pat:Patl_1554 lipoate-protein ligase B YP_003145526.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_003145527.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: noc:Noc_1086 peptidylprolyl isomerase, FKBP- type YP_003145528.1 PFAM: Glutathione S-transferase domain; KEGG: afr:AFE_0291 glutathione S-transferase family protein YP_003145529.1 PFAM: peptidase M48 Ste24p; KEGG: pha:PSHAa1224 hypothetical protein YP_003145530.1 KEGG: pha:PSHAa0308 hypothetical protein YP_003145532.1 PFAM: SNARE associated Golgi protein; KEGG: ecg:E2348C_0071 conserved inner membrane protein YP_003145533.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: maq:Maqu_3488 lysine exporter protein LysE/YggA YP_003145534.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: mca:MCA2278 sensor histidine kinase YP_003145535.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: noc:Noc_0676 two comoponent transcriptional regulator YP_003145536.1 KEGG: noc:Noc_0677 hypothetical protein YP_003145537.1 PFAM: Domain of unknown function DUF1853; KEGG: psp:PSPPH_3602 hypothetical protein YP_003145538.1 TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: sde:Sde_1067 acetyl-coenzyme A synthetase YP_003145539.1 KEGG: maq:Maqu_0666 pantoate--beta-alanine ligase; TIGRFAM: pantoate/beta-alanine ligase; cytidyltransferase-related domain protein; PFAM: Pantoate-beta-alanine ligase YP_003145540.1 KEGG: slo:Shew_3133 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase YP_003145541.1 PFAM: deoxynucleoside kinase; KEGG: tgr:Tgr7_0880 DNA polymerase III, epsilon subunit YP_003145542.1 KEGG: vvy:VV2762 7;8-dihydro-6-hydroxymethylpterin- pyrophosphokinase; TIGRFAM:2-amino-4-hydroxy-6-hydroxymethyldihydropter idinepyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin- pyrophosphokinase HPPK YP_003145543.1 KEGG: plu:plu0874 poly(A) polymerase I; TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region YP_003145544.1 PFAM: glutamyl-tRNA synthetase class Ic; KEGG: aha:AHA_3535 glutamyl-Q tRNA(Asp) synthetase YP_003145545.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: ilo:IL2250 hypothetical protein YP_003145546.1 TIGRFAM: sugar fermentation stimulation protein; PFAM: sugar fermentation stimulation protein; KEGG: shm:Shewmr7_3291 sugar fermentation stimulation protein YP_003145547.1 KEGG: ilo:IL2344 intracellular signaling protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; GAF domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; GAF domain protein; PAS domain containing protein YP_003145548.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: gbe:GbCGDNIH1_0274 rieske (2Fe-2S) domain protein YP_003145549.1 KEGG: gur:Gura_0016 hypothetical protein YP_003145551.1 KEGG: maq:Maqu_2439 GTP cyclohydrolase II; TIGRFAM: GTP cyclohydrolase II; PFAM: GTP cyclohydrolase II YP_003145552.1 catalyzes the removal of an N-terminal amino acid from a peptide or arylamide YP_003145553.1 KEGG: sdn:Sden_2623 GCN5-related N- acetyltransferase YP_003145554.1 KEGG: spl:Spea_1286 uroporphyrin-III C/tetrapyrrole methyltransferase YP_003145556.1 PFAM: GCN5-related N-acetyltransferase; KEGG: slo:Shew_2997 acetyltransferase-like protein YP_003145557.1 KEGG: sdn:Sden_0949 uroporphyrin-III C/tetrapyrrole methyltransferase YP_003145559.1 KEGG: sse:Ssed_3571 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_003145560.1 TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase HXTX; KEGG: pau:PA14_27110 2'-5' RNA ligase YP_003145561.1 KEGG: tgr:Tgr7_1407 penicillin-binding protein 1B; TIGRFAM: penicillin-binding protein 1B; PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase YP_003145562.1 PFAM: histidine triad (HIT) protein; KEGG: maq:Maqu_1709 histidine triad (HIT) protein YP_003145563.1 PFAM: peptidase M28; peptidase M20; KEGG: cps:CPS_2188 M23B family peptidase YP_003145564.1 PFAM: monooxygenase FAD-binding; KEGG: mxa:MXAN_0916 putative kynurenine 3- monooxygenase YP_003145565.1 KEGG: aba:Acid345_0680 kynureninase; TIGRFAM: kynureninase; PFAM: aminotransferase class V YP_003145566.1 KEGG: hypothetical protein YP_003145567.1 PFAM: amidohydrolase 2; KEGG: acmsd; aminocarboxymuconate semialdehyde decarboxylase YP_003145568.1 catalyzes the oxidative ring opening of 3-hydroxyanthranilate to 2-amino-3-carboxymuconate semialdehyde in the final enzymatic step of quinolinate biosynthesis YP_003145569.1 PFAM: Endoribonuclease L-PSP; KEGG: mxa:MXAN_0920 2-aminomuconate deaminase YP_003145570.1 PFAM: protein of unknown function DUF520; KEGG: aha:AHA_1129 nucleotide-binding protein YP_003145571.1 PFAM: protein of unknown function DUF885; KEGG: cps:CPS_3202 putative lipoprotein YP_003145573.1 KEGG: swp:swp_3310 hypothetical protein YP_003145574.1 KEGG: swp:swp_3314 TPA: chitinase C; ChiC YP_003145575.1 PFAM: Aldehyde Dehydrogenase; KEGG: mxa:MXAN_0921 2-aminomuconic semialdehyde dehydrogenase YP_003145576.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bba:Bd0506 putative short-chain dehydrogenase/reductase YP_003145578.1 TIGRFAM: addiction module antidote protein, HigA family; KEGG: son:SO_A0023 plasmid maintenance system antidote protein HigA YP_003145579.1 PFAM: plasmid maintenance system killer; KEGG: noc:Noc_0570 plasmid maintenance system killer YP_003145580.1 TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: ilo:IL2245 glutamate-1-semialdehyde aminotransferase YP_003145581.1 Catalyzes the conversion of carbamoyl phosphate and l-aspartate to yield orthophosphate and n-carbamoyl-l-aspartate YP_003145582.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: fph:Fphi_0043 rubredoxin YP_003145583.1 PFAM: protein of unknown function DUF796; KEGG: slo:Shew_0197 hypothetical protein YP_003145584.1 KEGG: slo:Shew_0295 hypothetical protein YP_003145586.1 KEGG: saz:Sama_3586 membrane protein YP_003145587.1 PFAM: Glutathione S-transferase domain; KEGG: abo:ABO_2425 glutathione S-transferase YP_003145588.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: pfo:Pfl01_3666 sigma-24 (FecI) YP_003145589.1 KEGG: bpy:Bphyt_1785 putative transmembrane anti- sigma factor YP_003145590.1 PFAM: protein of unknown function DUF74; KEGG: mmr:Mmar10_0837 hypothetical protein YP_003145592.1 TIGRFAM: peptide methionine sulfoxide reductase; methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; Methionine sulfoxide reductase B; KEGG: cja:CJA_2029 possible MsrA, pms peptide methionine sulfoxide reductase YP_003145593.1 PFAM: protein of unknown function DUF817; KEGG: ilo:IL1574 hypothetical protein YP_003145594.1 PFAM: conserved hypothetical protein; KEGG: maq:Maqu_0689 hypothetical protein YP_003145595.1 PFAM: Chloride channel core; KEGG: maq:Maqu_0690 Cl-channel, voltage-gated family protein YP_003145596.1 KEGG: ilo:IL2241 hypothetical protein YP_003145597.1 PFAM: protein of unknown function DUF583; KEGG: sml:Smlt4292 hypothetical protein YP_003145598.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: saz:Sama_0843 iron-sulfur cluster insertion protein ErpA YP_003145599.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling YP_003145600.1 PFAM: Peptidase M23; KEGG: cps:CPS_4726 M24/M37 family peptidase YP_003145601.1 KEGG: csa:Csal_3050 tyrosyl-tRNA synthetase; TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; RNA- binding S4 domain protein YP_003145602.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: hypothetical protein YP_003145604.1 KEGG: sde:Sde_2049 hypothetical protein YP_003145605.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: tgr:Tgr7_0097 DEAD/DEAH box helicase domain protein YP_003145607.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: ilo:IL2390 Xaa-Pro dipeptidase family enzyme YP_003145608.1 KEGG: saz:Sama_0196 UDP-N-acetylmuramate dehydrogenase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; FAD linked oxidase domain protein YP_003145609.1 KEGG: cja:CJA_0677 biotin-[acetyl-CoA-carboxylase] ligase; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; Helix-turn- helix type 11 domain protein; biotin protein ligase domain protein YP_003145610.1 TIGRFAM: transcriptional activator, Baf family; PFAM: Bvg accessory factor; KEGG: noc:Noc_0189 pantothenate kinase YP_003145611.1 TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain protein; elongation factor Tu domain 2 protein; KEGG: sgl:SG2283 elongation factor Tu YP_003145612.1 TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: pag:PLES_06521 secretion protein SecE YP_003145613.1 KEGG: aha:AHA_4033 transcription termination/antitermination factor NusG; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain protein; KOW domain protein; SMART: NGN domain protein; KOW domain protein YP_003145614.1 KEGG: abo:ABO_0374 50S ribosomal protein L11; TIGRFAM: ribosomal protein L11; PFAM: ribosomal protein L11; SMART: ribosomal protein L11 YP_003145615.1 TIGRFAM: ribosomal protein L1; PFAM: ribosomal protein L1; KEGG: tgr:Tgr7_2334 50S ribosomal protein L1 YP_003145616.1 PFAM: ribosomal protein L10; KEGG: tgr:Tgr7_2333 50S ribosomal protein L10 YP_003145617.1 TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12; KEGG: amc:MADE_00694 ribosomal protein L7/L12 YP_003145618.1 TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 7; RNA polymerase Rpb2 domain 3; RNA polymerase Rpb2 domain 2; RNA polymerase beta subunit; KEGG: cja:CJA_0692 DNA-directed RNA polymerase, beta subunit YP_003145619.1 KEGG: saz:Sama_0207 DNA-directed RNA polymerase subunit beta'; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase Rpb1 domain 5; RNA polymerase Rpb1 domain 3; RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 4; SMART: RNA polymerase I subunit A domain protein YP_003145620.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_003145621.1 TIGRFAM: ribosomal protein S7; PFAM: ribosomal protein S7; KEGG: abo:ABO_0381 30S ribosomal protein S7 YP_003145622.1 TIGRFAM: translation elongation factor G; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; elongation factor G domain IV; KEGG: hch:HCH_06220 translation elongation factor G YP_003145623.1 TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain protein; elongation factor Tu domain 2 protein; KEGG: sgl:SG2283 elongation factor Tu YP_003145624.1 TIGRFAM: ribosomal protein S10; PFAM: ribosomal protein S10; KEGG: pin:Ping_3525 ribosomal protein S10 YP_003145625.1 PFAM: ribosomal protein L3; KEGG: pen:PSEEN0490 50S ribosomal protein L3 YP_003145626.1 PFAM: ribosomal protein L4/L1e; KEGG: vpa:VP0258 50S ribosomal protein L4 YP_003145627.1 PFAM: Ribosomal protein L25/L23; KEGG: abo:ABO_0399 50S ribosomal protein L23 YP_003145628.1 TIGRFAM: ribosomal protein L2; PFAM: ribosomal protein L2; KEGG: amc:MADE_00448 50S ribosomal protein L2 YP_003145629.1 TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; KEGG: plu:plu4722 30S ribosomal protein S19 YP_003145630.1 TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17; KEGG: abo:ABO_0402 50S ribosomal protein L22 YP_003145631.1 KEGG: vvy:VV0381 30S ribosomal protein S3; TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; KH type 2 domain protein; Ribosomal protein S3 domain; SMART: KH domain protein YP_003145632.1 TIGRFAM: ribosomal protein L16; PFAM: ribosomal protein L16; KEGG: pha:PSHAa0151 50S ribosomal protein L16 YP_003145633.1 TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: pha:PSHAa0152 50S ribosomal subunit protein L29 YP_003145634.1 PFAM: ribosomal protein S17; KEGG: spl:Spea_0193 ribosomal protein S17 YP_003145635.1 TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; KEGG: asa:ASA_4077 ribosomal protein L14 YP_003145636.1 KEGG: saz:Sama_0224 50S ribosomal protein L24; TIGRFAM: ribosomal protein L24; PFAM: KOW domain protein; SMART: KOW domain protein YP_003145637.1 PFAM: ribosomal protein L5; KEGG: amc:MADE_00950 ribosomal protein L5 YP_003145638.1 PFAM: ribosomal protein S14; KEGG: sde:Sde_0972 30S ribosomal protein S14 YP_003145639.1 PFAM: ribosomal protein S8; KEGG: asa:ASA_4073 ribosomal protein S8 YP_003145640.1 PFAM: ribosomal protein L6; KEGG: abo:ABO_0412 50S ribosomal protein L6 YP_003145641.1 TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: shm:Shewmr7_0210 50S ribosomal protein L18 YP_003145642.1 TIGRFAM: ribosomal protein S5; PFAM: ribosomal protein S5 domain protein; Ribosomal protein S5; KEGG: abo:ABO_0414 30S ribosomal protein S5 YP_003145643.1 TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30; KEGG: shl:Shal_4116 ribosomal protein L30 YP_003145644.1 TIGRFAM: ribosomal protein L15; PFAM: ribosomal protein L15; KEGG: ppr:PBPRA0339 50S ribosomal protein L15 YP_003145645.1 TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; KEGG: ilo:IL1896 preprotein translocase subunit SecY YP_003145646.1 TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; KEGG: csa:Csal_0442 LSU ribosomal protein L36P YP_003145647.1 PFAM: ribosomal protein S13; KEGG: saz:Sama_0235 30S ribosomal protein S13 YP_003145648.1 PFAM: ribosomal protein S11; KEGG: cps:CPS_0624 30S ribosomal protein S11 YP_003145649.1 KEGG: amc:MADE_00962 30S ribosomal protein S4; TIGRFAM: ribosomal protein S4; PFAM: ribosomal protein S4; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein YP_003145650.1 KEGG: pap:PSPA7_0862 DNA-directed RNA polymerase subunit alpha; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase insert; RNA polymerase alpha subunit domain protein; RNA polymerase dimerisation; SMART: RNA polymerase RpoA/D/Rpb3-type YP_003145651.1 is a component of the macrolide binding site in the peptidyl transferase center YP_003145652.1 KEGG: eli:ELI_11025 hypothetical protein YP_003145653.1 KEGG: abo:ABO_1196 hypothetical protein YP_003145654.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: pla:Plav_2470 cation diffusion facilitator family transporter YP_003145655.1 KEGG: bmj:BMULJ_05959 signal transduction histidine kinase YP_003145656.1 KEGG: sse:Ssed_1331 hypothetical protein YP_003145657.1 PFAM: glycine hydroxymethyltransferase; aminotransferase class-III; Orn/Lys/Arg decarboxylase major region; aminotransferase class I and II; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: tgr:Tgr7_1557 glycine hydroxymethyltransferase YP_003145658.1 PFAM: ATP-cone domain protein; KEGG: pfl:PFL_5523 transcriptional regulator NrdR YP_003145659.1 TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: bifunctional deaminase-reductase domain protein; CMP/dCMP deaminase zinc-binding; KEGG: abo:ABO_2174 (S)-2-hydroxy-fatty-acid dehydrogenase YP_003145660.1 TIGRFAM: riboflavin synthase, alpha subunit; PFAM: Lumazine-binding protein; KEGG: pat:Patl_1312 riboflavin synthase subunit alpha YP_003145661.1 TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: vpa:VP0681 3,4-dihydroxy-2-butanone 4- phosphate synthase/GTP cyclohydrolase II YP_003145662.1 KEGG: maq:Maqu_0845 riboflavin synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 67-dimethyl-8-ribityllumazine synthase YP_003145663.1 TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: psp:PSPPH_4503 transcription antitermination protein NusB YP_003145664.1 KEGG: esa:ESA_02885 thiamine monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein YP_003145665.1 PFAM: phosphatidylglycerophosphatase A; KEGG: spl:Spea_1168 phosphatidylglycerophosphatase A YP_003145666.1 KEGG: sus:Acid_0937 hypothetical protein YP_003145669.1 KEGG: swd:Swoo_1676 hypothetical protein YP_003145670.1 KEGG: sfu:Sfum_1625 hypothetical protein YP_003145671.1 TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase central region; Transketolase domain protein; KEGG: vvy:VV0868 1-deoxy-D-xylulose-5-phosphate synthase YP_003145672.1 PFAM: Polyprenyl synthetase; KEGG: ppr:PBPRA0806 putative geranyltranstransferase YP_003145673.1 TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit; KEGG: mmw:Mmwyl1_1147 exodeoxyribonuclease VII, small subunit YP_003145674.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_003145675.1 PFAM: AsmA family protein; KEGG: sbn:Sbal195_2056 AsmA family protein YP_003145676.1 KEGG: aba:Acid345_1037 hypothetical protein YP_003145677.1 KEGG: vsp:VS_0113 methyltransferase-related protein YP_003145678.1 PFAM: ABC transporter related; SMC domain protein; SMART: AAA ATPase; KEGG: xac:XAC2389 ABC transporter ATP-binding protein YP_003145679.1 PFAM: Smr protein/MutS2; KEGG: hch:HCH_05041 hypothetical protein YP_003145681.1 KEGG: swp:swp_3560 hypothetical protein YP_003145682.1 TIGRFAM: transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: hch:HCH_00585 transcription elongation factor GreB YP_003145684.1 PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: swd:Swoo_0589 integral membrane sensor signal transduction histidine kinase YP_003145685.1 PFAM: response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; KEGG: bpy:Bphyt_0341 two component transcriptional regulator, fis family YP_003145686.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_3109 TonB-dependent receptor YP_003145687.1 KEGG: rce:RC1_2673 hypothetical protein YP_003145688.1 PFAM: protein of unknown function DUF446; KEGG: aha:AHA_1163 hypothetical protein YP_003145689.1 PFAM: zinc finger DksA/TraR C4-type; KEGG: aeh:Mlg_0421 TraR/DksA family transcriptional regulator YP_003145690.1 PFAM: Methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding; KEGG: vfi:VF_1575 O6-methylguanine-DNA methyltransferase YP_003145691.1 KEGG: mlo:mll6900 hypothetical protein YP_003145693.1 KEGG: shn:Shewana3_0527 hypothetical protein YP_003145694.1 PFAM: Peptidase M11 gametolysin; KEGG: she:Shewmr4_0529 peptidase M11, gametolysin YP_003145695.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: noc:Noc_1911 two component sigma-54 specific, fis family transcriptional regulator YP_003145696.1 PFAM: cytochrome B561; KEGG: wol:WD1169 cytochrome b561, putative YP_003145697.1 KEGG: saz:Sama_3034 phosphatidylserine decarboxylase; TIGRFAM: phosphatidylserine decarboxylase; PFAM: phosphatidylserine decarboxylase-related YP_003145698.1 TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: cps:CPS_4380 ribosome-associated GTPase YP_003145699.1 PFAM: transcriptional coactivator/pterin dehydratase; KEGG: nmu:Nmul_A0712 pterin-4-alpha-carbinolamine dehydratase YP_003145700.1 PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: amc:MADE_00551 oligoribonuclease YP_003145701.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: YjeF-family domain protein; protein of unknown function UPF0031; KEGG: pap:PSPA7_5678 hypothetical protein YP_003145702.1 PFAM: protein of unknown function UPF0079; KEGG: slo:Shew_0562 hypothetical protein YP_003145703.1 KEGG: sfr:Sfri_3314 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; Peptidoglycan- binding LysM; SMART: cell wall hydrolase/autolysin; Peptidoglycan- binding LysM YP_003145704.1 TIGRFAM: DNA mismatch repair protein MutL; PFAM: DNA mismatch repair protein domain protein; ATP-binding region ATPase domain protein; MutL dimerisation; KEGG: hch:HCH_05385 DNA mismatch repair protein YP_003145705.1 KEGG: ppr:PBPRA3351 tRNA delta(2)- isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase YP_003145706.1 TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein core; KEGG: kpe:KPK_5098 RNA chaperone Hfq YP_003145707.1 TIGRFAM: GTP-binding proten HflX; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KEGG: saz:Sama_3024 GTP-binding protein HflX YP_003145708.1 KEGG: pha:PSHAa0273 hypothetical protein; TIGRFAM: HflK protein; PFAM: band 7 protein; SMART: band 7 protein YP_003145709.1 KEGG: pat:Patl_3981 HflC protein; TIGRFAM: HflC protein; PFAM: band 7 protein; SMART: band 7 protein YP_003145710.1 KEGG: mfa:Mfla_1585 hypothetical protein YP_003145711.1 KEGG: pfo:Pfl01_0528 adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase; SMART: adenylosuccinate synthetase YP_003145712.1 PFAM: protein of unknown function DUF418; protein of unknown function DUF405; KEGG: sal:Sala_2201 hypothetical protein YP_003145713.1 PFAM: protein of unknown function DUF1653; KEGG: hch:HCH_06896 hypothetical protein YP_003145714.1 PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: pca:Pcar_0172 catalytic LigB subunit of aromatic ring-opening dioxygenase YP_003145715.1 KEGG: swd:Swoo_0028 hypothetical protein YP_003145716.1 KEGG: swd:Swoo_2341 NAD-dependent epimerase/dehydratase YP_003145717.1 KEGG: swd:Swoo_2342 hypothetical protein YP_003145718.1 PFAM: Saccharopine dehydrogenase; KEGG: swd:Swoo_2343 saccharopine dehydrogenase YP_003145719.1 TIGRFAM: elongation factor P-like protein YeiP; PFAM: Elongation factor P; Elongation factor P/YeiP protein; Elongation factor KOW domain protein; KEGG: plu:plu2861 elongation factor P YP_003145720.1 PFAM: peptidase S10 serine carboxypeptidase; KEGG: gbm:Gbem_2090 peptidase S10 serine carboxypeptidase YP_003145722.1 KEGG: tgr:Tgr7_0631 cytochrome c oxidase, cbb3- type, subunit I; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; PFAM: cytochrome c oxidase subunit I YP_003145723.1 TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: vfm:VFMJ11_1378 cytochrome c oxidase, Cbb3- type, subunit II YP_003145724.1 PFAM: Cbb3-type cytochrome oxidase component; KEGG: hch:HCH_02274 cytochrome c oxidase, cbb3- type, subunit CcoQ YP_003145725.1 TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c class I; KEGG: abo:ABO_1348 cytochrome c oxidase, cbb3-type, subunit III, putative YP_003145726.1 TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: aeh:Mlg_1877 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_003145727.1 PFAM: FixH family protein; KEGG: pat:Patl_2069 hypothetical protein YP_003145728.1 TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: cps:CPS_1990 copper-translocating P-type ATPase YP_003145729.1 TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3- type; KEGG: sde:Sde_2415 secretion protein HlyD YP_003145730.1 KEGG: sde:Sde_2414 hypothetical protein YP_003145731.1 catalyzes the conversion of N-acetylornithine to N-acetylcitrulline in an alternative arginine biosynthesis pathway YP_003145732.1 catalyzes ATP + L-citrulline + L-aspartate = AMP + diphosphate + (N(omega)-L-arginino)succinate YP_003145733.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine YP_003145734.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_003145735.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate YP_003145736.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_003145737.1 KEGG: tgr:Tgr7_1237 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: HemN domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003145738.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp; cyclic nucleotide- binding; KEGG: cko:CKO_01409 fumarate/nitrate reduction transcriptional regulator YP_003145739.1 PFAM: protein of unknown function DUF1282; KEGG: pap:PSPA7_4189 hypothetical protein YP_003145740.1 PFAM: Methyltransferase type 11; UbiE/COQ5 methyltransferase; Methyltransferase type 12; KEGG: tbd:Tbd_2169 hypothetical protein YP_003145741.1 PFAM: DinB family protein; KEGG: cvi:CV_1144 hypothetical protein YP_003145742.1 TIGRFAM: rfaE bifunctional protein; cytidyltransferase-related domain protein; PFAM: PfkB domain protein; cytidylyltransferase; KEGG: aeh:Mlg_2810 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase YP_003145743.1 KEGG: pmy:Pmen_2453 hypothetical protein YP_003145744.1 KEGG: efe:EFER_4232 exoribonuclease R, RNase R; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonuclease; PFAM: ribonuclease II; Ribonuclease B OB region domain; RNA binding S1 domain protein; Ribonuclease R winged-helix domain protein; SMART: Cold shock protein; RNA binding S1 domain protein YP_003145745.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: cja:CJA_2994 RNA methyltransferase, TrmH family, group 3 YP_003145746.1 KEGG: hypothetical protein YP_003145747.1 KEGG: sde:Sde_3942 hypothetical protein YP_003145748.1 KEGG: bha:BH1818 hypothetical protein; TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; SMART: Allophanate hydrolase subunit 2 YP_003145749.1 PFAM: Allophanate hydrolase subunit 1; SMART: Allophanate hydrolase subunit 1; KEGG: bph:Bphy_2903 allophanate hydrolase subunit 1 YP_003145750.1 PFAM: LamB/YcsF family protein; KEGG: swd:Swoo_0008 LamB/YcsF family protein YP_003145751.1 PFAM: natural resistance-associated macrophage protein; KEGG: ilo:IL2296 Mn2+/Fe2+ transporter YP_003145752.1 catalyzes the formation of asparagine from aspartate and ammonia YP_003145753.1 transcriptional repressor of asnA which codes for aspartate-ammonia ligase YP_003145754.1 PFAM: Fimbrial protein pilin; KEGG: sde:Sde_1078 pilin YP_003145755.1 KEGG: mpt:Mpe_A0508 pilus tip-associated protein YP_003145757.1 TIGRFAM: ribosomal protein S6; PFAM: ribosomal protein S6; KEGG: spl:Spea_3586 30S ribosomal protein S6 YP_003145758.1 TIGRFAM: ribosomal protein S18; PFAM: ribosomal protein S18; KEGG: amc:MADE_03777 30S ribosomal protein S18 YP_003145759.1 TIGRFAM: ribosomal protein L9; PFAM: ribosomal protein L9; KEGG: hch:HCH_01713 ribosomal protein L9 YP_003145760.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: fph:Fphi_0252 hypothetical protein YP_003145761.1 KEGG: pfo:Pfl01_5571 hypothetical protein YP_003145762.1 PFAM: putative thiol-disulphide oxidoreductase DCC; KEGG: pst:PSPTO_4436 hypothetical protein YP_003145765.1 KEGG: cstf2; RNA recognition motif-containing protein (RRM) YP_003145766.1 KEGG: vfi:VF_0301 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase YP_003145767.1 KEGG: saz:Sama_3057 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein YP_003145768.1 PFAM: protein of unknown function UPF0047; KEGG: pzu:PHZ_c0766 hypothetical protein YP_003145769.1 KEGG: cak:Caul_2357 PepSY-associated TM helix YP_003145770.1 PFAM: HtpX domain protein; peptidase M48 Ste24p; KEGG: ppf:Pput_3844 heat shock protein HtpX YP_003145771.1 KEGG: prw:PsycPRwf_0370 hypothetical protein YP_003145772.1 TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase DuS; KEGG: noc:Noc_2960 tRNA-dihydrouridine synthase A YP_003145775.1 KEGG: jan:Jann_0111 hypothetical protein YP_003145776.1 PFAM: phospholipase A1; KEGG: slo:Shew_0671 phospholipase A(1) YP_003145777.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: sml:Smlt1133 putative peptidase YP_003145778.1 PFAM: beta-lactamase domain protein; KEGG: eli:ELI_06065 Zn-dependent hydrolase, glyoxylase family protein YP_003145779.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: pzu:PHZ_c0313 fumarylacetoacetate hydrolase family protein YP_003145780.1 PFAM: protein of unknown function DUF461; KEGG: mlo:mll3326 hypothetical protein YP_003145781.1 KEGG: spl:Spea_3565 hypothetical protein YP_003145782.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: saz:Sama_2611 ECF subfamily RNA polymerase sigma-24 factor YP_003145783.1 KEGG: shl:Shal_3254 hypothetical protein YP_003145784.1 PFAM: Inorganic pyrophosphatase; KEGG: pat:Patl_0140 inorganic diphosphatase YP_003145785.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient YP_003145786.1 KEGG: maq:Maqu_3677 hypothetical protein YP_003145787.1 PFAM: Rhomboid family protein; KEGG: maq:Maqu_3678 rhomboid family protein YP_003145788.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: sdn:Sden_0905 TonB-like protein YP_003145789.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis YP_003145790.1 TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: aha:AHA_3549 UDP-N-acetylmuramate:L-alanyl- gamma-D-glutamyl-meso-diaminopimelate ligase YP_003145791.1 TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy- lyase; PFAM: flavoprotein; KEGG: vha:VIBHAR_00787 aromatic acid decarboxylase YP_003145792.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sbo:SBO_0116 putative ATP-binding component of a transport system YP_003145793.1 PFAM: ABC-2 type transporter; KEGG: hch:HCH_04490 ABC-type multidrug transport system, permease component YP_003145794.1 PFAM: peptidase S16 lon domain protein; SMART: peptidase S16 lon domain protein; KEGG: pfl:PFL_5459 ATP-dependent protease La YP_003145797.1 KEGG: ppr:PBPRA1493 hypothetical protein YP_003145798.1 enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity YP_003145799.1 KEGG: pca:Pcar_1476 hypothetical protein YP_003145800.1 PFAM: sulfatase; KEGG: swd:Swoo_0154 sulfatase YP_003145801.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: she:Shewmr4_3855 LuxR family transcriptional regulator YP_003145802.1 PFAM: von Willebrand factor type A; peptidase S1 and S6 chymotrypsin/Hap; SMART: von Willebrand factor type A; KEGG: nmu:Nmul_A1222 von Willebrand factor, type A YP_003145803.1 catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge YP_003145804.1 PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: rpe:RPE_2083 alcohol dehydrogenase GroES domain protein YP_003145805.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: ppr:PBPRB0212 ATP-dependent RNA helicase DbpA YP_003145806.1 KEGG: dps:DP1336 alpha-acetolactate decarboxylase YP_003145807.1 KEGG: bca:BCE_4579 hypothetical protein YP_003145808.1 KEGG: cja:CJA_1584 RloA protein YP_003145809.1 KEGG: cja:CJA_1583 CRISPR-associated protein, Csm2 family YP_003145811.1 TIGRFAM: GTP-binding protein YchF; PFAM: Protein of unknown function DUF933; GTP- binding protein HSR1-related; KEGG: hso:HS_0503 translation-associated GTPase YP_003145812.1 KEGG: swp:swp_3904 peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase YP_003145813.1 TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal protein L25; KEGG: amc:MADE_02581 ribosomal protein L25 YP_003145814.1 KEGG: hch:HCH_01726 phosphoribosylpyrophosphate synthetase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase YP_003145815.1 KEGG: cja:CJA_0646 4-diphosphocytidyl-2C-methyl-D- erythritol kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase domain protein YP_003145816.1 TIGRFAM: outer membrane lipoprotein LolB; PFAM: outer membrane lipoprotein LolB; KEGG: vpa:VP0741 outer membrane lipoprotein LolB YP_003145817.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: noc:Noc_0511 TPR repeat-containing protein YP_003145818.1 KEGG: asa:ASA_1174 glutamyl-tRNA reductase; TIGRFAM: glutamyl-tRNA reductase; PFAM: Shikimate/quinate 5-dehydrogenase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like YP_003145819.1 TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: amc:MADE_02573 peptide chain release factor 1 YP_003145820.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; ribosomal L11 methyltransferase; KEGG: vvy:VV0932 methylase of polypeptide chain release factor YP_003145821.1 TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; KEGG: asa:ASA_3937 rod shape-determining protein MreB YP_003145822.1 TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; KEGG: slo:Shew_0404 rod shape-determining protein MreC YP_003145823.1 TIGRFAM: rod shape-determining protein MreD; PFAM: Rod shape-determining protein MreD; KEGG: shl:Shal_3837 rod shape-determining protein MreD YP_003145824.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: pin:Ping_1125 maf protein YP_003145825.1 KEGG: pag:PLES_48561 cytoplasmic axial filament protein; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein YP_003145826.1 KEGG: sse:Ssed_0563 hypothetical protein YP_003145827.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: hha:Hhal_2135 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_003145828.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: shl:Shal_3832 peptidase U62 modulator of DNA gyrase YP_003145829.1 PFAM: protein of unknown function DUF615; KEGG: ppw:PputW619_4274 hypothetical protein YP_003145830.1 PFAM: TonB-dependent receptor plug; KEGG: pae:PA1613 hypothetical protein YP_003145831.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: tgr:Tgr7_2264 microcin-processing peptidase 1 YP_003145832.1 KEGG: abo:ABO_0541 magnesium transporter; TIGRFAM: magnesium transporter; PFAM: MgtE intracellular region; CBS domain containing protein; MgtE integral membrane region; SMART: CBS domain containing protein YP_003145833.1 PFAM: conserved hypothetical protein; KEGG: cps:CPS_4546 hypothetical protein YP_003145834.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: saz:Sama_3090 nitrogen regulatory IIA protein YP_003145835.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: ilo:IL0395 S30EA ribosomal protein YP_003145836.1 TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor core-binding region; sigma-54 factor; KEGG: sbp:Sbal223_0707 RNA polymerase, sigma 54 subunit, RpoN YP_003145837.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: swp:swp_0678 ABC transporter YP_003145838.1 PFAM: OstA family protein; KEGG: ilo:IL0398 hypothetical protein YP_003145839.1 PFAM: protein of unknown function DUF1239; KEGG: pha:PSHAa2548 hypothetical protein YP_003145840.1 TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: eca:ECA0292 3-deoxy-D-manno-octulosonate 8- phosphate phosphatase YP_003145841.1 KEGG: abo:ABO_0557 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: sugar isomerase (SIS); CBS domain containing protein; SMART: CBS domain containing protein YP_003145842.1 TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: pha:PSHAa2545 Na:Ca transport protein (CacA) YP_003145843.1 PFAM: BolA family protein; KEGG: vsa:VSAL_I0510 hypothetical protein YP_003145844.1 TIGRFAM: UDP-N-acetylglucosamine 1- carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1- carboxyvinyltransferase); KEGG: aeh:Mlg_2217 UDP-N-acetylglucosamine 1- carboxyvinyltransferase YP_003145845.1 PFAM: PDZ/DHR/GLGF domain protein; peptidase S1 and S6 chymotrypsin/Hap; SMART: PDZ/DHR/GLGF domain protein; KEGG: hha:Hhal_2110 peptidase S1 and S6, chymotrypsin/Hap YP_003145846.1 PFAM: protein of unknown function DUF1043; KEGG: aeh:Mlg_0881 hypothetical protein YP_003145847.1 KEGG: tbd:Tbd_2287 putative integral membrane protein YP_003145848.1 KEGG: CG32662 YP_003145849.1 KEGG: xac:XAC0279 hypothetical protein YP_003145850.1 PFAM: AFG1-family ATPase; KEGG: cps:CPS_4344 AFG1 family ATPase YP_003145852.1 PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: sde:Sde_0911 DNA-binding protein HU, putative YP_003145853.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_003145854.1 PFAM: ribosomal protein S9; KEGG: ilo:IL0415 ribosomal protein S9 YP_003145855.1 KEGG: cja:CJA_2785 ubiquinol-cytochrome c reductase, iron-sulfur subunit; TIGRFAM: ubiquinol-cytochrome c reductase, iron- sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein YP_003145856.1 PFAM: Cytochrome b/b6 domain; KEGG: ppw:PputW619_0925 cytochrome b/b6 domain- containing protein YP_003145857.1 PFAM: cytochrome c1; KEGG: sdn:Sden_3199 cytochrome c1 YP_003145858.1 PFAM: Glutathione S-transferase domain; KEGG: stm:STM3342 stringent starvation protein A YP_003145859.1 PFAM: Stringent starvation protein B; KEGG: sspB; stringent starvation protein B; K03600 stringent starvation protein B YP_003145860.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: hsm:HSM_1204 transport-associated YP_003145861.1 KEGG: slo:Shew_0225 phosphoheptose isomerase YP_003145862.1 PFAM: protein of unknown function UPF0102; KEGG: psa:PST_1070 hypothetical protein YP_003145863.1 PFAM: LppC family lipoprotein; KEGG: pae:PA4423 hypothetical protein YP_003145864.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: sde:Sde_3144 putative methyltransferase YP_003145865.1 KEGG: pha:PSHAa0470 hypothetical protein YP_003145866.1 KEGG: sse:Ssed_2574 hypothetical protein YP_003145867.1 catalyzes the formation of glutamate from glutamine YP_003145868.1 TIGRFAM: MraZ protein; PFAM: protein of unknown function UPF0040; KEGG: ecg:E2348C_0086 hypothetical protein YP_003145869.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: cja:CJA_2937 S-adenosyl-methyltransferase MraW YP_003145870.1 TIGRFAM: cell division protein FtsL; PFAM: cell division protein FtsL; KEGG: ppr:PBPRA3222 putative cell division protein FtsL YP_003145871.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: pat:Patl_3525 peptidoglycan glycosyltransferase YP_003145872.1 TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: hsm:HSM_0623 UDP-N-acetylmuramyl-tripeptide synthetase YP_003145873.1 TIGRFAM:UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-di aminopimelate/D-alanyl-D-alanylligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: pha:PSHAa2508 D-alanine:D-alanine-adding enzyme YP_003145874.1 KEGG: ilo:IL0433 UDP-N-acetylmuramyl pentapeptide phosphotransferase; TIGRFAM:phospho-N-acetylmuramoyl-pentapeptide-transf erase; PFAM: glycosyl transferase family 4 YP_003145875.1 TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: pat:Patl_3521 UDP-N-acetylmuramoylalanine--D- glutamate ligase YP_003145876.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: amc:MADE_03259 cell division protein FtsW YP_003145877.1 KEGG: aha:AHA_3884 undecaprenyldiphospho- muramoylpentapeptide beta-N-acetylglucosaminyltransferase; TIGRFAM:UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase; PFAM: Glycosyltransferase 28 domain; glycosyl transferase family 28 YP_003145878.1 TIGRFAM: UDP-N-acetylmuramate/alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: aha:AHA_3883 UDP-N-acetylmuramate--alanine ligase YP_003145879.1 KEGG: pin:Ping_1149 D-alanine--D-alanine ligase; TIGRFAM: D-alanine/D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein YP_003145880.1 PFAM: cell division protein FtsQ; Polypeptide- transport-associated domain protein FtsQ-type; KEGG: hha:Hhal_2087 polypeptide-transport- associated domain protein, FtsQ-type YP_003145881.1 TIGRFAM: cell division protein FtsA; PFAM: cell division protein FtsA; KEGG: tgr:Tgr7_0774 cell division protein FtsA YP_003145882.1 TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ domain protein; KEGG: aeh:Mlg_2187 cell division protein FtsZ YP_003145883.1 TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; PFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; KEGG: tgr:Tgr7_0776 UDP-3-0-acyl N- acetylglucosamine deacetylase YP_003145884.1 PFAM: protein of unknown function DUF721; KEGG: vsa:VSAL_I2638 hypothetical protein YP_003145885.1 PFAM: Peptidase M23; KEGG: hch:HCH_05874 membrane protein related to metalloendopeptidase YP_003145886.1 TIGRFAM: preprotein translocase, SecA subunit; PFAM: SecA DEAD domain protein; SecA Wing and Scaffold; SecA preprotein cross-linking region; SEC-C motif domain protein; KEGG: amc:MADE_03250 translocase YP_003145887.1 TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; KEGG: sse:Ssed_0419 mutator MutT protein YP_003145888.1 PFAM: protein of unknown function DUF329; KEGG: cja:CJA_2734 domain of unknown function (DUF329) family YP_003145889.1 PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: ent:Ent638_0654 N-acetyl-anhydromuranmyl-L- alanine amidase YP_003145890.1 KEGG: ypm:YP_0260 quinolinate phosphoribosyltransferase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase YP_003145891.1 PFAM: Excinuclease ABC C subunit domain protein; KEGG: ftn:FTN_0418 endonuclease YP_003145892.1 KEGG: eba:ebB136 fimbrial protein precursor PilE (MS11 antigen) YP_003145893.1 KEGG: vsp:VS_0319 hypothetical protein YP_003145894.1 TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: abo:ABO_0614 type IV fimbrial assembly protein PilB YP_003145895.1 PFAM: type II secretion system protein; KEGG: cps:CPS_4448 type IV pilus biogenesis protein PilC YP_003145896.1 PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV; KEGG: asa:ASA_0411 type IV prepilin peptidase TapD YP_003145897.1 KEGG: shn:Shewana3_0416 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase YP_003145898.1 PFAM: protein of unknown function DUF1342; KEGG: pmr:PMI2053 hypothetical protein YP_003145899.1 KEGG: tgr:Tgr7_0638 signaling modulator of AmpD, AmpE YP_003145900.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC YP_003145901.1 KEGG: ilo:IL0459 dihydrolipoamide acetyltransferase; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain- containing protein; E3 binding domain protein YP_003145902.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; KEGG: sgl:SG0469 dihydrolipoamide dehydrogenase YP_003145903.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: cps:CPS_3352 membrane protein YP_003145904.1 PFAM: peptidase S9B dipeptidylpeptidase IV domain protein; peptidase S15; peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: pha:PSHAa2386 dipeptidyl peptidase IV YP_003145905.1 PFAM: NHL repeat containing protein; KEGG: sfr:Sfri_2048 L-sorbosone dehydrogenase, putative YP_003145906.1 PFAM: peptidase M13; peptidase M13 neprilysin; KEGG: shw:Sputw3181_3384 endothelin-converting protein 1 YP_003145907.1 PFAM: thioesterase superfamily protein; KEGG: swd:Swoo_4857 thioesterase superfamily protein YP_003145908.1 PFAM: PP-loop domain protein; KEGG: pmu:PM0606 hypothetical protein YP_003145909.1 PFAM: nucleoside recognition domain protein; KEGG: cps:CPS_0719 putative spore maturation protein A/B YP_003145910.1 PFAM: methyltransferase small; putative methyltransferase; KEGG: tgr:Tgr7_2883 methyltransferase small YP_003145912.1 KEGG: pin:Ping_1613 putative RNA 2'-O-ribose methyltransferase YP_003145913.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis YP_003145914.1 PFAM: FAD-binding domain protein; flavodoxin/nitric oxide synthase; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: pat:Patl_4039 sulfite reductase (NADPH) flavoprotein, alpha chain YP_003145915.1 TIGRFAM: sulfite reductase (NADPH) hemoprotein, beta-component; PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: bha:BH0610 sulfite reductase subunit beta YP_003145916.1 TIGRFAM: phosphoadenosine phosphosulfate reductase; PFAM: phosphoadenosine phosphosulfate reductase; KEGG: pmr:PMI2248 phosphoadenosine phosphosulfate reductase YP_003145917.1 TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pha:PSHAa0213 siroheme synthase YP_003145918.1 KEGG: mmr:Mmar10_2239 amino acid/peptide transporter; TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region YP_003145919.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: pat:Patl_0448 2OG-Fe(II) oxygenase YP_003145920.1 TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: hha:Hhal_1073 alcohol dehydrogenase GroES domain protein YP_003145921.1 KEGG: noc:Noc_0987 hypothetical protein YP_003145922.1 PFAM: UvrD/REP helicase; KEGG: noc:Noc_0988 UvrD/REP helicase YP_003145923.1 PFAM: GCN5-related N-acetyltransferase; KEGG: shn:Shewana3_2617 GCN5-related N- acetyltransferase YP_003145924.1 PFAM: protein of unknown function DUF885; KEGG: pha:PSHAb0514 putative lipoprotein, ounterparts found in phytopathogens YP_003145925.1 KEGG: aci:ACIAD3138 hypothetical protein YP_003145927.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_003145928.1 KEGG: sfr:Sfri_3258 hypothetical protein YP_003145929.1 PFAM: protein of unknown function DUF885; KEGG: ilo:IL1443 hypothetical protein YP_003145930.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: slo:Shew_0949 redoxin domain-containing protein YP_003145931.1 TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: mmw:Mmwyl1_1085 glycine cleavage T protein (aminomethyl transferase) YP_003145932.1 PFAM: protein of unknown function DUF339; KEGG: csa:Csal_2151 protein of unknown function DUF339 YP_003145934.1 KEGG: sdn:Sden_2773 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase YP_003145935.1 TIGRFAM: RNA polymerase sigma factor RpoE; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: sse:Ssed_1142 RNA polymerase sigma factor RpoE YP_003145936.1 PFAM: Anti sigma-E protein RseA family protein; KEGG: swp:swp_3785 sigma-E factor negative regulatory protein YP_003145938.1 PFAM: Positive regulator of sigma(E) RseC/MucC; KEGG: tgr:Tgr7_1086 positive regulator of sigma E, RseC/MucC YP_003145939.1 KEGG: pau:PA14_54390 serine protease MucD precursor; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein YP_003145940.1 TIGRFAM: GTP-binding protein LepA; small GTP- binding protein; PFAM: GTP-binding protein LepA domain protein; elongation factor G domain protein; elongation factor Tu domain 2 protein; protein synthesis factor GTP-binding; KEGG: eta:ETA_09900 GTP-binding protein LepA YP_003145941.1 KEGG: saz:Sama_0879 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein YP_003145942.1 KEGG: xca:xccb100_3031 hypothetical protein YP_003145943.1 KEGG: maq:Maqu_2245 ribonuclease III; TIGRFAM: ribonuclease III; PFAM: ribonuclease III; double-stranded RNA binding domain protein; SMART: ribonuclease III; double-stranded RNA binding domain protein YP_003145944.1 TIGRFAM: GTP-binding protein Era; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; KEGG: pin:Ping_0641 GTP-binding protein Era YP_003145945.1 TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; KEGG: vvy:VV2829 DNA repair protein RecO YP_003145946.1 TIGRFAM: pyridoxal phosphate biosynthetic protein PdxJ; PFAM: Pyridoxal phosphate biosynthetic protein PdxJ; KEGG: sfx:S2799 pyridoxal phosphate biosynthetic protein PdxJ YP_003145947.1 KEGG: vfm:VFMJ11_2188 holo-(acyl-carrier-protein) synthase; TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase YP_003145948.1 KEGG: maq:Maqu_1426 hypothetical protein YP_003145949.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: hch:HCH_05753 short chain dehydrogenase YP_003145950.1 PFAM: glutathione peroxidase; KEGG: bcz:BCZK1926 glutathione peroxidase YP_003145951.1 PFAM: peptidase M28; peptidase M20; KEGG: saz:Sama_0919 peptidase M28 YP_003145952.1 PFAM: cation antiporter; KEGG: swp:swp_0941 cation antiporter YP_003145953.1 PFAM: multiple resistance and pH regulation protein F; KEGG: swp:swp_0940 multiple resistance and pH regulation protein F YP_003145954.1 TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: shl:Shal_3358 monovalent cation/proton antiporter, MnhG/PhaG subunit YP_003145955.1 subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_003145956.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: swp:swp_0937 NADH-ubiquinone oxidoreductase, chain 4L YP_003145957.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone YP_003145958.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: swp:swp_0934 NADH-ubiquinone oxidoreductase subunit, putative YP_003145959.1 KEGG: swd:Swoo_3955 hypothetical protein YP_003145960.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; in S. meliloti it is known to be involved specifically with K+ transport YP_003145961.1 KEGG: pat:Patl_4179 hypothetical protein YP_003145962.1 PFAM: transcriptional regulator domain protein; WD40 domain protein beta Propeller; KEGG: swd:Swoo_0918 transcriptional regulator, CadC YP_003145964.1 KEGG: ilo:IL1821 fatty acid metabolism regulator; TIGRFAM: fatty acid metabolism transcriptional regulator FadR; PFAM: fatty acid responsive transcription factor FadR domain protein; regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH YP_003145965.1 KEGG: cja:CJA_2902 putative lipoprotein YP_003145966.1 SohB; periplasmic protein; member of the peptidase S49 family YP_003145967.1 PFAM: thiopurine S-methyltransferase; KEGG: spl:Spea_0588 thiopurine S-methyltransferase YP_003145968.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: noc:Noc_1156 peptidase S9, prolyl oligopeptidase active site region YP_003145969.1 KEGG: mmw:Mmwyl1_0435 hypothetical protein YP_003145970.1 PFAM: sodium:dicarboxylate symporter; KEGG: pha:PSHAa1346 proton/glutamate symporter YP_003145971.1 PFAM: Penicillinase repressor; KEGG: swp:swp_3949 penicillinase repressor YP_003145972.1 TIGRFAM: TonB family protein; PFAM: peptidase M56 BlaR1; Gram-negative tonB protein; KEGG: xom:XOO_1086 TonB-like protein YP_003145973.1 catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation YP_003145974.1 TIGRFAM: succinylglutamic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: shl:Shal_3608 succinylglutamic semialdehyde dehydrogenase YP_003145975.1 KEGG: cvi:CV_1498 arginine N-succinyltransferase; TIGRFAM: arginine/ornithine succinyltransferase subunit; arginine N-succinyltransferase; PFAM: arginine N-succinyltransferase beta subunit YP_003145976.1 TIGRFAM: succinylornithine transaminase family; acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; aminotransferase class I and II; KEGG: amc:MADE_00499 bifunctional N- succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein YP_003145977.1 PFAM: OmpW family protein; KEGG: vha:VIBHAR_06904 outer membrane protein W YP_003145978.1 PFAM: lipolytic protein G-D-S-L family; KEGG: pfo:Pfl01_4014 lipolytic protein YP_003145979.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfl:PFL_4279 ABC transporter, ATP-binding protein YP_003145980.1 PFAM: protein of unknown function DUF214; KEGG: pag:PLES_22061 putative ABC transporter, permease protein YP_003145981.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity YP_003145982.1 KEGG: vsa:VSAL_I1549 dihydroorotate dehydrogenase; TIGRFAM: dihydroorotate dehydrogenase; PFAM: dihydroorotate dehydrogenase YP_003145983.1 PFAM: putative RNA methylase; THUMP domain protein; KEGG: pca:Pcar_2072 23S rRNA m(2)G2445 methyltransferase YP_003145984.1 KEGG: GI21568 gene product from transcript GI21568- RA YP_003145985.1 PFAM: glutaredoxin 2; KEGG: vsp:VS_1425 hypothetical protein YP_003145986.1 PFAM: regulatory protein TetR; KEGG: aha:AHA_1345 PsrA protein YP_003145987.1 PFAM: Protein of unknown function DUF1974; acyl-CoA dehydrogenase domain protein; KEGG: aha:AHA_1346 acyl-CoA dehydrogenase YP_003145988.1 PFAM: pyruvate carboxyltransferase; KEGG: psa:PST_3240 2-isopropylmalate synthase YP_003145990.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: sml:Smlt0671 putative ribosomal-protein- alanine acetyltransferase YP_003145991.1 KEGG: ajs:Ajs_0088 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein YP_003145992.1 PFAM: MscS Mechanosensitive ion channel; KEGG: spe:Spro_1048 MscS mechanosensitive ion channel YP_003145993.1 TIGRFAM: peptide chain release factor 3; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: asu:Asuc_0982 peptide chain release factor 3 YP_003145994.1 PFAM: TatD-related deoxyribonuclease; KEGG: pmy:Pmen_0783 TatD family hydrolase YP_003145995.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sml:Smlt4003 putative TonB dependent receptor YP_003145996.1 PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: cja:CJA_0483 type IV pilus biogenesis protein YP_003145997.1 PFAM: Lytic transglycosylase catalytic; extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: cps:CPS_3674 Slt family transglycosylase YP_003145998.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_003145999.1 KEGG: tcx:Tcr_1805 hypothetical protein YP_003146003.1 PFAM: EAL domain protein; SMART: EAL domain protein; KEGG: vvu:VV2_1264 EAL domain-containing protein YP_003146004.1 KEGG: abo:ABO_0263 glutamate--cysteine ligase; TIGRFAM: glutamate/cysteine ligase; PFAM: glutamate--cysteine ligase YP_003146005.1 TIGRFAM: sodium/proline symporter; SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: bha:BH0660 sodium/proline symporter YP_003146006.1 PFAM: GCN5-related N-acetyltransferase; KEGG: hch:HCH_05438 histone acetyltransferase HPA2- like acetyltransferase YP_003146007.1 KEGG: pfl:PFL_1089 phosphoribosylglycinamide formyltransferase 2; TIGRFAM: phosphoribosylglycinamide formyltransferase 2; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp YP_003146008.1 PFAM: heat shock protein Hsp20; CS; KEGG: afr:AFE_2086 heat shock protein, HSP20 family YP_003146009.1 PFAM: UspA domain protein; KEGG: hch:HCH_04760 universal stress protein UspA- like nucleotide-binding protein YP_003146010.1 KEGG: abo:ABO_1535 transport protein, putative YP_003146011.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: slo:Shew_1060 hypothetical protein YP_003146012.1 PFAM: cytochrome c assembly protein; KEGG: abb:ABBFA_002820 cytochrome c assembly family protein YP_003146013.1 KEGG: amc:MADE_01690 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase YP_003146014.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: lpc:LPC_0770 TPR repeat-containing protein YP_003146015.1 KEGG: hypothetical protein YP_003146016.1 TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: swp:swp_3768 ribosomal protein S16 YP_003146017.1 TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: swp:swp_3767 RimM protein:PRC-barrel YP_003146018.1 KEGG: ilo:IL1724 tRNA (guanine-N(1)-)- methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase YP_003146019.1 TIGRFAM: ribosomal protein L19; PFAM: ribosomal protein L19; KEGG: pmy:Pmen_3398 50S ribosomal protein L19 YP_003146020.1 TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: pen:PSEEN4254 site-specific tyrosine recombinase XerD YP_003146021.1 KEGG: pha:PSHAa0515 disulfide bond isomerase, periplasmic; chaperone; activated by DsbD; homodimeric YP_003146022.1 PFAM: protein of unknown function DUF498; KEGG: aeh:Mlg_1824 hypothetical protein YP_003146023.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: tgr:Tgr7_1460 single-stranded-DNA-specific exonuclease RecJ YP_003146024.1 KEGG: rce:RC1_2716 hypothetical protein YP_003146025.1 PFAM: MscS Mechanosensitive ion channel; Conserved TM helix repeat-containing protein; KEGG: pin:Ping_0541 MscS mechanosensitive ion channel YP_003146026.1 KEGG: mca:MCA1711 hypothetical protein; TIGRFAM: MiaB-like tRNA modifying enzyme; RNA modification enzyme, MiaB family; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB YP_003146027.1 KEGG: hch:HCH_01804 signal transduction histidine kinase; PFAM: response regulator receiver; Hpt domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein YP_003146028.1 KEGG: azo:azo3437 hypothetical protein YP_003146029.1 KEGG: lpc:LPC_0825 hypothetical protein YP_003146030.1 TIGRFAM: RNA methyltransferase, TrmA family; PFAM: (Uracil-5)-methyltransferase; putative RNA methylase; KEGG: maq:Maqu_2239 23S rRNA 5-methyluridine methyltransferase YP_003146032.1 PFAM: zinc/iron permease; KEGG: dsh:Dshi_3953 zinc/iron permease YP_003146033.1 KEGG: pmy:Pmen_1735 (p)ppGpp synthetase I, SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: RelA/SpoT domain protein; TGS domain protein; amino acid-binding ACT domain protein YP_003146034.1 TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: slo:Shew_1203 nucleoside triphosphate pyrophosphohydrolase YP_003146035.1 KEGG: bsu:BSU36610 hypothetical protein YP_003146036.1 PFAM: protein of unknown function DUF188; KEGG: cps:CPS_3584 hypothetical protein YP_003146037.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_003146038.1 TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; KEGG: tcx:Tcr_1261 2-dehydro-3-deoxyphosphooctonate aldolase YP_003146039.1 KEGG: pag:PLES_14001 enolase; TIGRFAM: enolase; PFAM: enolase YP_003146040.1 PFAM: Septum formation initiator; KEGG: sde:Sde_1246 cell division protein FtsB YP_003146041.1 TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: pmu:PM1608 2-C-methyl-D-erythritol 4- phosphate cytidylyltransferase YP_003146042.1 KEGG: sus:Acid_3856 ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase catalytic region; Histidine biosynthesis protein HisG domain YP_003146043.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: aminotransferase class I and II; Haloacid dehalogenase domain protein hydrolase; KEGG: sec:SC2083 histidinol-phosphate aminotransferase YP_003146044.1 PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: azc:AZC_4502 imidazoleglycerol-phosphate dehydratase YP_003146045.1 TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I; KEGG: dps:DP2167 bifunctional histidine biosynthesis protein (HisHF) YP_003146046.1 TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis protein; KEGG: cha:CHAB381_1745 imidazoleglycerol phosphate synthase, cyclase subunit YP_003146047.1 TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: histidine biosynthesis protein; phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; KEGG: sus:Acid_3849 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4- carboxamide isomerase YP_003146048.1 KEGG: mes:Meso_0190 histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase; PFAM: histidinol dehydrogenase YP_003146049.1 KEGG: amc:MADE_03722 2-C-methyl-D-erythritol 2,4- cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4- cyclodiphosphate synthase; PFAM: MECDP-synthase YP_003146050.1 PFAM: tRNA pseudouridine synthase D TruD; KEGG: slo:Shew_1209 pseudouridylate synthase YP_003146051.1 KEGG: pha:PSHAa0687 acid phosphatase SurE; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE YP_003146052.1 KEGG: ppw:PputW619_4054 protein-L-isoaspartate O- methyltransferase; TIGRFAM: protein-L-isoaspartate O- methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O- methyltransferase YP_003146053.1 PFAM: SNARE associated Golgi protein; KEGG: amc:MADE_03725 membrane protein; member of the DedA of proteins YP_003146054.1 PFAM: Peptidase M23; Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: pfl:PFL_1206 peptidase M23/LysM domain- containing protein YP_003146056.1 PFAM: BolA family protein; KEGG: sml:Smlt3256 putative BolA-like morphology switching protein YP_003146057.1 PFAM: YCII-related; KEGG: pin:Ping_1053 YCII-related YP_003146058.1 KEGG: hch:HCH_02130 intracellular septation protein A YP_003146059.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: pin:Ping_1061 phosphotransferase domain- containing protein YP_003146060.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: cja:CJA_1797 SUA5/YciO/YrdC/YwlC family protein YP_003146061.1 KEGG: abb:ABBFA_002712 hypothetical protein YP_003146062.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mms:mma_1841 glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein YP_003146063.1 PFAM: protein of unknown function DUF1428; KEGG: smt:Smal_0413 protein of unknown function DUF1428 YP_003146064.1 PFAM: Glutathione S-transferase domain; KEGG: pol:Bpro_4773 glutathione S-transferase-like YP_003146065.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: sfu:Sfum_1142 transcriptional regulator, MarR family YP_003146066.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_003146067.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: sde:Sde_1720 condensin subunit ScpA YP_003146068.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: sde:Sde_1721 condensin subunit ScpB YP_003146069.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dar:Daro_2960 response regulator receiver YP_003146070.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; SMART: RNA-binding S4 domain protein; KEGG: pat:Patl_2824 pseudouridine synthase, Rsu YP_003146071.1 PFAM: Polyphosphate kinase; KEGG: sde:Sde_3654 polyphosphate kinase YP_003146072.1 PFAM: Ppx/GppA phosphatase; KEGG: esa:ESA_00759 exopolyphosphatase YP_003146073.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: asa:ASA_3114 short chain dehydrogenase/reductase family oxidoreductase YP_003146074.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: hch:HCH_04353 response regulator YP_003146075.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: slo:Shew_1790 integral membrane sensor signal transduction histidine kinase YP_003146076.1 KEGG: bph:Bphy_0391 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; GAF domain protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; GAF domain protein; PAS domain containing protein YP_003146077.1 TIGRFAM: phosphoglycolate phosphatase; HAD- superfamily hydrolase, subfamily IA, variant 3; HAD- superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: maq:Maqu_2496 phosphoglycolate phosphatase YP_003146078.1 KEGG: mmw:Mmwyl1_2861 ubiquinone biosynthesis O- methyltransferase; TIGRFAM: ubiquinone biosynthesis O- methyltransferase; PFAM: Methyltransferase type 11; UbiE/COQ5 methyltransferase; Methyltransferase type 12 YP_003146079.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: tgr:Tgr7_1531 N-ethylammeline chlorohydrolase YP_003146080.1 KEGG: tgr:Tgr7_1535 DNA gyrase, A subunit; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; SMART: DNA gyrase/topoisomerase IV subunit A YP_003146081.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine YP_003146082.1 PFAM: protein of unknown function DUF1272; KEGG: reh:H16_B1935 hypothetical protein YP_003146083.1 PFAM: peptidase S9A prolyl oligopeptidase domain protein beta-propeller; peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: ilo:IL0074 protease II YP_003146084.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_003146085.1 KEGG: ilo:IL1356 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region YP_003146086.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_003146087.1 KEGG: pag:PLES_19071 integration host factor beta subunit; TIGRFAM: integration host factor, beta subunit; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein YP_003146088.1 PFAM: protein of unknown function DUF1049; KEGG: aeh:Mlg_0933 hypothetical protein YP_003146089.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: vha:VIBHAR_02857 hypothetical protein YP_003146090.1 KEGG: saz:Sama_1740 orotidine-5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase YP_003146091.1 TIGRFAM: competence protein ComEA helix-hairpin- helix repeat protein; KEGG: msu:MS1748 ComEA protein YP_003146092.1 PFAM: Rhomboid family protein; KEGG: she:Shewmr4_2060 rhomboid family protein YP_003146095.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: ecn:Ecaj_0818 transcriptional regulator YP_003146096.1 PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; KEGG: shw:Sputw3181_0408 sulphate transporter YP_003146097.1 PFAM: UspA domain protein; KEGG: ppw:PputW619_5171 UspA domain-containing protein YP_003146098.1 PFAM: aminotransferase class I and II; KEGG: abo:ABO_0944 aspartate aminotransferase YP_003146099.1 KEGG: tgr:Tgr7_1759 excinuclease ABC subunit B; TIGRFAM: excinuclease ABC, B subunit; PFAM: helicase domain protein; UvrB/UvrC protein; SMART: DEAD-like helicase; helicase domain protein YP_003146100.1 PFAM: toluene tolerance family protein; KEGG: cje:Cj1372 putative periplasmic protein YP_003146101.1 KEGG: eca:ECA0204 transcriptional activator RfaH; TIGRFAM: transcriptional activator RfaH; PFAM: NGN domain protein; SMART: NGN domain protein YP_003146102.1 TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: sbm:Shew185_1469 3'(2'),5'-bisphosphate nucleotidase YP_003146103.1 PFAM: polysaccharide export protein; protein of unknown function DUF1017; KEGG: spc:Sputcn32_2543 polysaccharide export protein YP_003146104.1 KEGG: hch:HCH_02378 hypothetical protein YP_003146105.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: shw:Sputw3181_1462 lipopolysaccharide biosynthesis protein YP_003146106.1 PFAM: glycosyl transferase family 4; KEGG: sse:Ssed_3031 undecaprenyl-phosphate alpha-N- acetylglucosaminyl 1-phosphatetransferase YP_003146107.1 KEGG: vvy:VV0341 UDP-N-acetylglucosamine 2- epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase YP_003146108.1 TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase dimerisation; UDP- glucose/GDP-mannose dehydrogenase; KEGG: vvu:VV1_0779 UDP-N-acetyl-D-mannosamine dehydrogenase YP_003146109.1 KEGG: mpo:Mpop_3541 transferase hexapeptide repeat containing protein YP_003146110.1 PFAM: sulfotransferase; KEGG: scl:sce1864 hypothetical protein YP_003146111.1 PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: vpa:VPA1412 polysaccharide biosynthesis-like protein YP_003146112.1 PFAM: sulfotransferase; KEGG: pat:Patl_1180 sulfotransferase YP_003146113.1 PFAM: polysaccharide deacetylase; KEGG: nis:NIS_1842 polysaccharide deacetylase family protein YP_003146114.1 KEGG: bat:BAS1496 hypothetical protein YP_003146115.1 KEGG: scl:sce1864 hypothetical protein YP_003146116.1 PFAM: glycosyl transferase group 1; KEGG: hch:HCH_05274 glycosyltransferase YP_003146117.1 KEGG: attR; transacetylase YP_003146118.1 KEGG: sme:SM_b21237 sulfotransferase domain- containing protein YP_003146119.1 KEGG: pin:Ping_0421 hypothetical protein YP_003146120.1 KEGG: sec:SC3834 putative UDP-N-acetyl-D- mannosaminuronic acid transferase; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF YP_003146121.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_003146122.1 KEGG: ftn:FTN_0927 sulfate adenylate transferase, subunit 1; TIGRFAM: sulfate adenylyltransferase, large subunit; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein YP_003146123.1 PFAM: TrkA-C domain protein; Citrate transporter; KEGG: sse:Ssed_2959 TrkA domain-containing protein YP_003146124.1 KEGG: maq:Maqu_2622 adenylyl-sulfate kinase; TIGRFAM: adenylylsulfate kinase; PFAM: adenylylsulfate kinase YP_003146125.1 KEGG: hch:HCH_01887 endonuclease III; TIGRFAM: endonuclease III; PFAM: HhH-GPD family protein; helix-hairpin-helix motif; SMART: HhH-GPD family protein; iron-sulfur cluster loop YP_003146126.1 TIGRFAM: electron transport complex, RnfABCDGE type, E subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: vvy:VV1187 SoxR-reducing system protein RsxE YP_003146127.1 TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; KEGG: pat:Patl_2969 electron transport complex, RnfABCDGE type, G subunit YP_003146128.1 TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; KEGG: aha:AHA_2637 electron transport complex, RnfABCDGE type, D subunit YP_003146129.1 TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: amc:MADE_02731 electron transport complex protein RnfC YP_003146130.1 TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: Fe-S cluster domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: hch:HCH_01893 NADH:ubiquinone oxidoreductase, subunit RnfB YP_003146131.1 TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: vsa:VSAL_I1872 electron transport complex protein RnfA YP_003146132.1 KEGG: ilo:IL2345 hypothetical protein YP_003146133.1 PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: vsa:VSAL_I2141 response regulator VarA YP_003146134.1 KEGG: tgr:Tgr7_1907 excinuclease ABC subunit C; TIGRFAM: excinuclease ABC, C subunit; PFAM: excinuclease ABC C subunit domain protein; Excinuclease ABC C subunit domain protein; helix-hairpin- helix motif; UvrB/UvrC protein; SMART: Excinuclease ABC C subunit domain protein; Helix-hairpin-helix DNA-binding class 1 YP_003146135.1 KEGG: pfo:Pfl01_3065 CDP-diacylglycerol--glycerol-3- phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3- phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_003146136.1 PFAM: peptidase M61 domain protein; KEGG: abo:ABO_1522 hypothetical protein YP_003146137.1 TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: mmw:Mmwyl1_2366 exodeoxyribonuclease III YP_003146138.1 KEGG: aeh:Mlg_1785 hypothetical protein YP_003146139.1 KEGG: maq:Maqu_1890 hypothetical protein YP_003146140.1 PFAM: PfkB domain protein; KEGG: cja:CJA_0657 kinase, PfkB family YP_003146141.1 TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; KEGG: hap:HAPS_2183 phosphohistidine phosphatase YP_003146142.1 PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: maq:Maqu_3400 phospholipid/glycerol acyltransferase YP_003146143.1 KEGG: sdn:Sden_1536 N5-glutamine S-adenosyl-L- methionine-dependent methyltransferase; TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; Methyltransferase type 12 YP_003146144.1 PFAM: protein of unknown function DUF462; KEGG: lpp:lpp1881 hypothetical protein YP_003146145.1 PFAM: ATP-NAD/AcoX kinase; KEGG: swd:Swoo_3015 ATP-NAD/AcoX kinase YP_003146146.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: asa:ASA_3986 glutathione-regulated potassium- efflux system ancillary protein KefG YP_003146147.1 TIGRFAM: potassium efflux system protein; PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; KEGG: aha:AHA_0342 glutathione-regulated potassium- efflux system protein KefB YP_003146148.1 PFAM: conserved hypothetical protein; KEGG: cps:CPS_4093 hypothetical protein YP_003146149.1 PFAM: Pirin domain protein; KEGG: bcm:Bcenmc03_2227 pirin domain-containing protein YP_003146150.1 KEGG: slo:Shew_3253 hypothetical protein YP_003146151.1 KEGG: pha:PSHAa1921 hypothetical protein YP_003146152.1 PFAM: protein of unknown function DUF752; FAD dependent oxidoreductase; KEGG: lpp:lpp1489 hypothetical protein YP_003146153.1 KEGG: pmy:Pmen_3289 GTP cyclohydrolase; TIGRFAM: GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I YP_003146154.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pmr:PMI1792 erythronate-4-phosphate dehydrogenase YP_003146155.1 KEGG: cja:CJA_2145 hypothetical protein YP_003146156.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: mmw:Mmwyl1_1655 cold-shock DNA-binding domain- containing protein YP_003146157.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: pau:PA14_19290 putative ATP-dependent RNA helicase YP_003146158.1 KEGG: she:Shewmr4_1216 hypothetical protein YP_003146159.1 PFAM: peptidase M19 renal dipeptidase; KEGG: pat:Patl_3688 membrane dipeptidase YP_003146160.1 KEGG: hha:Hhal_0396 membrane protein YP_003146161.1 KEGG: eli:ELI_08075 hypothetical protein YP_003146162.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: csa:Csal_2454 transcriptional regulator, LysR family YP_003146163.1 KEGG: hch:HCH_02428 isopropylmalate isomerase large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: aconitate hydratase domain protein YP_003146164.1 KEGG: tbd:Tbd_1921 isopropylmalate isomerase small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein YP_003146165.1 KEGG: tcx:Tcr_0797 3-isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase YP_003146166.1 KEGG: yen:YE1263 cytochrome c biogenesis protein CcmA; TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; SMART: AAA ATPase YP_003146167.1 TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: cps:CPS_1033 heme exporter protein CcmB YP_003146168.1 TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: cja:CJA_2067 heme exporter protein C YP_003146169.1 TIGRFAM: heme exporter protein CcmD; KEGG: prw:PsycPRwf_2167 heme exporter protein D (CcmD) YP_003146170.1 PFAM: CcmE/CycJ protein; KEGG: abo:ABO_0874 cytochrome c-type biogenesis protein CcmE YP_003146171.1 TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: cja:CJA_2064 cytochrome c-type biogenesis protein CcmF YP_003146172.1 TIGRFAM: periplasmic protein thiol/disulphide oxidoreductase DsbE; PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: hch:HCH_04363 cytochrome c-type biogenesis protein CcmG YP_003146173.1 PFAM: cytochrome C biogenesis protein; KEGG: spe:Spro_3384 cytochrome c biogenesis protein YP_003146174.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: yen:YE1271 VacJ lipoprotein YP_003146175.1 KEGG: swd:Swoo_1787 hypothetical protein YP_003146176.1 PFAM: protein of unknown function DUF692; Xylose isomerase domain protein TIM barrel; KEGG: pat:Patl_2900 hypothetical protein YP_003146177.1 KEGG: abo:ABO_1517 hypothetical protein YP_003146178.1 PFAM: VacJ family lipoprotein; KEGG: mmw:Mmwyl1_2518 VacJ family lipoprotein YP_003146179.1 PFAM: 5-nucleotidase; KEGG: abo:ABO_1438 5'-nucleotidase YP_003146180.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: ilo:IL2101 amidohydrolase YP_003146181.1 PFAM: domain of unknown function DUF1731; 3-beta hydroxysteroid dehydrogenase/isomerase; NAD-dependent epimerase/dehydratase; KEGG: pat:Patl_2911 hypothetical protein YP_003146182.1 KEGG: xom:XOO_1719 L-serine dehydratase; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain YP_003146183.1 PFAM: NUDIX hydrolase; KEGG: ilo:IL1707 NUDIX family NTP pyrophosphohydrolase YP_003146184.1 TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Chorismate binding-like; Anthranilate synthase component I domain protein; KEGG: vpa:VP1875 para-aminobenzoate synthase component I YP_003146185.1 TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: spl:Spea_2038 tartrate/fumarate subfamily Fe- S type hydro-lyase alpha subunit YP_003146186.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate YP_003146187.1 KEGG: rpi:Rpic_3860 2-methylcitrate synthase/citrate synthase II; TIGRFAM: 2-methylcitrate synthase/citrate synthase II; PFAM: Citrate synthase YP_003146188.1 Catalyzes the conversion of citrate to isocitrate YP_003146190.1 TIGRFAM: AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453; KEGG: maq:Maqu_1663 putative AcnD-accessory protein PrpF YP_003146191.1 KEGG: bbt:BBta_4307 hypothetical protein YP_003146192.1 KEGG: sde:Sde_3847 TonB-dependent receptor YP_003146193.1 KEGG: noc:Noc_0277 streptogramin lyase YP_003146194.1 KEGG: sdn:Sden_1215 hypothetical protein YP_003146195.1 KEGG: eli:ELI_04770 hypothetical protein YP_003146196.1 PFAM: multicopper oxidase type 3; multicopper oxidase type 2; KEGG: scl:sce1180 oxidoreductase YP_003146197.1 PFAM: FAD dependent oxidoreductase; KEGG: bmj:BMULJ_05067 glycine/D-amino acid oxidase YP_003146198.1 functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C YP_003146199.1 PFAM: regulatory protein MarR; KEGG: mmr:Mmar10_1517 hypothetical protein YP_003146200.1 PFAM: peptidase M19 renal dipeptidase; KEGG: swi:Swit_2882 peptidase M19, renal dipeptidase YP_003146201.1 PFAM: zinc finger DksA/TraR C4-type; KEGG: pag:PLES_52561 putative zinc-finger containing protein YP_003146202.1 PFAM: pseudouridine synthase; KEGG: pin:Ping_1531 pseudouridine synthase YP_003146203.1 PFAM: LVIVD repeat protein; KEGG: cja:CJA_1396 putative hemolysin YP_003146204.1 KEGG: hch:HCH_06665 hypothetical protein YP_003146205.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: short-chain dehydrogenase/reductase (SDR) family protein YP_003146206.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cvi:CV_1731 hypothetical protein YP_003146207.1 KEGG: abo:ABO_1833 putative lipoprotein YP_003146208.1 PFAM: protein of unknown function DUF785; KEGG: sse:Ssed_3966 alpha-L-glutamate ligase YP_003146209.1 TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: RimK domain protein ATP-grasp; protein of unknown function DUF201; KEGG: hch:HCH_03717 glutathione synthase/ribosomal protein S6 modification glutaminyl transferase YP_003146211.1 KEGG: pst:PSPTO_3646 DNA polymerase III subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase YP_003146212.1 PFAM: conserved hypothetical protein; KEGG: ilo:IL1848 hypothetical protein YP_003146213.1 KEGG: cja:CJA_2439 recombination protein RecR; TIGRFAM: recombination protein RecR; PFAM: TOPRIM domain protein; Zinc finger C4-type, RecR; SMART: Toprim sub domain protein YP_003146214.1 PFAM: O-methyltransferase family 3; KEGG: mxa:MXAN_5983 O-methyltransferase family protein YP_003146215.1 PFAM: peptidase S41; KEGG: saz:Sama_1752 hypothetical protein YP_003146216.1 KEGG: sfr:Sfri_0593 hypothetical protein YP_003146217.1 PFAM: heat shock protein Hsp90; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: amc:MADE_01104 heat shock protein 90 YP_003146218.1 KEGG: dps:DP1716 hypothetical protein YP_003146220.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: peptidase S1 and S6 chymotrypsin/Hap; KEGG: sbn:Sbal195_1860 peptidase S1 and S6 chymotrypsin/Hap YP_003146221.1 KEGG: mca:MCA1000 hypothetical protein YP_003146223.1 KEGG: bcn:Bcen_3479 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase YP_003146224.1 PFAM: VanZ family protein; KEGG: csa:Csal_0118 VanZ like protein YP_003146226.1 KEGG: hch:HCH_01814 adenylate kinase-like kinase; TIGRFAM: adenylate kinase; PFAM: adenylate kinase; adenylate kinase lid domain protein YP_003146227.1 KEGG: vpa:VP0823 ferrochelatase; TIGRFAM: ferrochelatase; PFAM: ferrochelatase YP_003146228.1 SMART: helicase c2; KEGG: asu:Asuc_1107 helicase C2 YP_003146229.1 PFAM: peptidase M22 glycoprotease; KEGG: swd:Swoo_2105 peptidase M22 glycoprotease YP_003146230.1 TIGRFAM: outer membrane lipoprotein, Slp family; PFAM: outer membrane lipoprotein Slp; KEGG: ilo:IL1829 starvation-inducible outer membrane lipoprotein YP_003146231.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: pmy:Pmen_1907 MATE efflux family protein YP_003146232.1 PFAM: Cupin 4 family protein; SMART: transcription factor jumonji jmjC domain protein; KEGG: sde:Sde_1674 hypothetical protein YP_003146233.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_003146235.1 KEGG: tgr:Tgr7_1051 hypothetical protein YP_003146236.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate YP_003146237.1 KEGG: sfr:Sfri_0395 hypothetical protein YP_003146238.1 KEGG: tgr:Tgr7_3153 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; extracellular solute-binding protein family 3; SMART: EAL domain protein; GGDEF domain containing protein; extracellular solute-binding protein family 3 YP_003146239.1 KEGG: saz:Sama_2938 hypothetical protein YP_003146240.1 KEGG: slo:Shew_2576 3-oxoacid CoA-transferase, B subunit; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase YP_003146241.1 KEGG: saz:Sama_1357 3-oxoacid CoA-transferase; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase YP_003146242.1 PFAM: pyruvate carboxyltransferase; KEGG: tmz:Tmz1t_0753 pyruvate carboxyltransferase YP_003146243.1 PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; biotin carboxylase domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: gme:Gmet_3292 3-methylcrotonoyl-CoA carboxylase, alpha subunit YP_003146244.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: gme:Gmet_3291 enoyl-CoA hydratase/isomerase YP_003146245.1 PFAM: carboxyl transferase; KEGG: gme:Gmet_3290 carboxyl transferase YP_003146246.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: pfo:Pfl01_2867 acyl-CoA dehydrogenase-like YP_003146247.1 KEGG: eba:ebA3639 putative acyl-CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase YP_003146248.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: pha:PSHAa1452 isovaleryl-CoA dehydrogenase YP_003146249.1 PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR; KEGG: shl:Shal_2901 MerR family transcriptional regulator YP_003146250.1 PFAM: ribosome modulation factor; KEGG: pat:Patl_2008 ribosome modulation factor YP_003146251.1 TIGRFAM: TonB family protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: swd:Swoo_2922 TonB family protein YP_003146252.1 PFAM: alpha-2-macroglobulin domain protein; alpha-2- macroglobulin domain protein 2; KEGG: hch:HCH_01955 large extracellular alpha- helical protein YP_003146253.1 TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; Penicillin-binding domain protein; KEGG: hch:HCH_01956 penicillin-binding protein 1C YP_003146254.1 TIGRFAM:S-adenosylmethionine/tRNA- ribosyltransferase -isomerase; PFAM: Queuosine biosynthesis protein; KEGG: sde:Sde_1405 small GTP-binding protein domain- containing protein YP_003146255.1 KEGG: hch:HCH_04469 queuine tRNA-ribosyltransferase; TIGRFAM: queuine tRNA-ribosyltransferase; tRNA- guanine transglycosylase, various specificities; PFAM: Queuine/other tRNA-ribosyltransferase YP_003146256.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: abo:ABO_0502 preprotein translocase, YajC subunit YP_003146257.1 TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: vsp:VS_0601 protein-export membrane protein SecD YP_003146258.1 TIGRFAM: protein-export membrane protein SecF; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: amc:MADE_01348 protein-export membrane protein SecF YP_003146259.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pat:Patl_2842 MscS mechanosensitive ion channel YP_003146260.1 KEGG: amc:MADE_02154 hypothetical protein YP_003146261.1 KEGG: maq:Maqu_2732 MiaB-like tRNA modifying enzyme YliG; TIGRFAM: MiaB-like tRNA modifying enzyme YliG; RNA modification enzyme, MiaB family; PFAM: Protein of unknown function UPF0004; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003146262.1 PFAM: conserved hypothetical protein; KEGG: har:HEAR1695 hypothetical protein YP_003146263.1 KEGG: hch:HCH_10022 Tfp pilus assembly protein FimT YP_003146264.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: response regulator receiver; KEGG: hch:HCH_05925 sigma 54-dependent transcriptional activator YP_003146265.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: psa:PST_3645 two-component sensor PilS YP_003146266.1 KEGG: spe:Spro_3650 NAD synthetase; TIGRFAM: NAD+ synthetase; PFAM: NAD synthase; ExsB family protein; Nitrilase/cyanide hydratase and apolipoprotein N- acyltransferase YP_003146267.1 PFAM: nitrogen regulatory protein P-II; KEGG: vvy:VV2536 nitrogen regulatory protein PII YP_003146268.1 TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: amc:MADE_01439 competence lipoprotein ComL YP_003146269.1 KEGG: pmr:PMI0393 ribosomal large subunit pseudouridine synthase D; TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein YP_003146270.1 PFAM: protein of unknown function DUF152; KEGG: aeh:Mlg_2557 hypothetical protein YP_003146271.1 PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: noc:Noc_2382 phospholipid/glycerol acyltransferase YP_003146272.1 KEGG: tgr:Tgr7_0817 ATP-dependent chaperone ClpB; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: AAA ATPase YP_003146273.1 PFAM: NnrS family protein; KEGG: aha:AHA_3945 heme/copper membrane protein YP_003146275.1 KEGG: Tb-291 membrane-associated protein-like YP_003146277.1 KEGG: maq:Maqu_0881 hypothetical protein YP_003146278.1 KEGG: cbc:CbuK_1959 acetyltransferase YP_003146279.1 KEGG: pat:Patl_1340 CDP-diacylglycerol--serine O- phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/serine O- phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_003146280.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: pat:Patl_3742 ECF subfamily RNA polymerase sigma-24 factor YP_003146282.1 KEGG: saz:Sama_1059 hypothetical protein YP_003146283.1 PFAM: protein of unknown function DUF489; KEGG: shm:Shewmr7_1677 hypothetical protein YP_003146284.1 KEGG: vco:VC0395_A0646 tRNA (5-methylaminomethyl-2- thiouridylate)-methyltransferase; TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase; PFAM: tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase YP_003146285.1 PFAM: NUDIX hydrolase; KEGG: dar:Daro_3293 NUDIX hydrolase YP_003146286.1 PFAM: pseudouridine synthase; KEGG: shn:Shewana3_1749 ribosomal large subunit pseudouridine synthase E YP_003146287.1 KEGG: sde:Sde_1684 isocitrate dehydrogenase (NADP+); TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent monomeric type YP_003146288.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pha:PSHAa1987 TonB-dependent receptor protein YP_003146289.1 KEGG: ccs:CCNA_01156 hypothetical protein YP_003146290.1 PFAM: tryptophan halogenase; KEGG: cak:Caul_0296 tryptophan halogenase YP_003146291.1 PFAM: tryptophan halogenase; KEGG: sbp:Sbal223_3217 tryptophan halogenase YP_003146292.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: mgm:Mmc1_2106 DNA-directed DNA polymerase YP_003146293.1 PFAM: peptidase S24 and S26 domain protein; KEGG: acb:A1S_0636 DNA polymerase V component YP_003146294.1 PFAM: beta-lactamase domain protein; KEGG: cja:CJA_0142 metallo-beta-lactamase superfamily domain protein YP_003146295.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; aminotransferase class V; KEGG: ent:Ent638_1386 L-threonine aldolase YP_003146296.1 negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis YP_003146297.1 PFAM: fatty acid desaturase; KEGG: pha:PSHAa2897 long chain acyl-CoA desaturase YP_003146298.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pat:Patl_2370 thioredoxin reductase YP_003146300.1 PFAM: Domain of unknown function DUF1801; KEGG: mmr:Mmar10_2216 hypothetical protein YP_003146301.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: gbm:Gbem_0208 cold-shock DNA-binding domain protein YP_003146302.1 KEGG: tbd:Tbd_1068 hypothetical protein YP_003146303.1 KEGG: hch:HCH_03065 membrane protein related to metalloendopeptidase YP_003146304.1 KEGG: pin:Ping_3605 alanine dehydrogenase; TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; Shikimate/quinate 5-dehydrogenase YP_003146305.1 PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: yen:YE1524 leucine-responsive transcriptional regulator YP_003146306.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: abo:ABO_1290 cell division protein FtsK YP_003146307.1 TIGRFAM: outer membrane lipoprotein carrier protein LolA; PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: hch:HCH_02446 outer-membrane lipoprotein carrier protein YP_003146308.1 PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: ppu:PP_4002 recombination factor protein RarA YP_003146309.1 TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: slo:Shew_2021 CrcB protein YP_003146310.1 TIGRFAM: seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl- tRNA synthetase, class IIa-like; KEGG: amc:MADE_02111 seryl-tRNA synthetase YP_003146311.1 PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: spl:Spea_2613 rhodanese domain-containing protein YP_003146312.1 KEGG: she:Shewmr4_1396 hypothetical protein YP_003146313.1 TIGRFAM: N-carbamoylputrescine amidase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: vpa:VP1774 putative carbon-nitrogen hydrolase YP_003146314.1 PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: ftw:FTW_1639 peptidyl-arginine deiminase YP_003146315.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis YP_003146316.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine YP_003146317.1 TIGRFAM: S-adenosylmethionine decarboxylase proenzyme; PFAM: S-adenosylmethionine decarboxylase related; KEGG: tcx:Tcr_0272 S-adenosylmethionine decarboxylase related YP_003146318.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: psa:PST_2463 hypothetical protein YP_003146320.1 PFAM: Glu/Leu/Phe/Val dehydrogenase dimerisation region; Glu/Leu/Phe/Val dehydrogenase; KEGG: shl:Shal_1711 Glu/Leu/Phe/Val dehydrogenase dimerisation region YP_003146321.1 PFAM: Aldehyde Dehydrogenase; KEGG: noc:Noc_1710 aldehyde dehydrogenase YP_003146322.1 PFAM: Calcium-binding EF-hand-containing protein; SMART: Calcium-binding EF-hand-containing protein; KEGG: pat:Patl_0965 signal transduction protein YP_003146323.1 PFAM: plasmid pRiA4b ORF-3 family protein; KEGG: afw:Anae109_1544 plasmid pRiA4b ORF-3 family protein YP_003146324.1 PFAM: Saccharopine dehydrogenase; oxidoreductase domain protein; TrkA-N domain protein; KEGG: aba:Acid345_1791 saccharopine dehydrogenase YP_003146325.1 KEGG: vsp:VS_2070 hypothetical protein YP_003146326.1 KEGG: pmy:Pmen_1593 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: TRCF domain protein; transcription factor CarD; helicase domain protein; DEAD/DEAH box helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicase; helicase domain protein YP_003146329.1 KEGG: pat:Patl_2310 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_003146330.1 PFAM: sodium/hydrogen exchanger; KEGG: par:Psyc_0146 CPA1 family Na(+)/H(+) antiporter YP_003146331.1 KEGG: maq:Maqu_3785 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region YP_003146332.1 PFAM: Ion transport protein; KEGG: tcx:Tcr_0546 ion transport protein YP_003146333.1 PFAM: protein of unknown function DUF1315; KEGG: vsp:VS_0935 hypothetical protein YP_003146334.1 PFAM: alanine dehydrogenase/PNT domain protein; KEGG: saccharopine dehydrogenase YP_003146336.1 KEGG: efe:EFER_1297 cytoplasmic L-asparaginase I; TIGRFAM: L-asparaginase, type I; PFAM: Asparaginase/glutaminase YP_003146337.1 KEGG: vfi:VF_2604 hypothetical protein YP_003146338.1 KEGG: sbl:Sbal_2622 hypothetical protein YP_003146339.1 KEGG: dar:Daro_3642 hypothetical protein YP_003146340.1 PFAM: ATP-binding region ATPase domain protein; KEGG: pmu:PM1084 hypothetical protein YP_003146341.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sde:Sde_3405 outer membrane protein YP_003146342.1 KEGG: pha:PSHAa2432 hypothetical protein YP_003146343.1 TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: slo:Shew_1737 nicotinamide mononucleotide transporter PnuC YP_003146344.1 PFAM: aminoglycoside phosphotransferase; Choline/ethanolamine kinase; KEGG: ilo:IL2355 LPS biosynthesis choline kinase YP_003146345.1 KEGG: amc:MADE_00571 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_003146346.1 PFAM: Protein of unknown function DUF1974; acyl-CoA dehydrogenase domain protein; KEGG: asa:ASA_2784 acyl-CoA dehydrogenase YP_003146347.1 KEGG: gbm:Gbem_2759 hypothetical protein YP_003146348.1 KEGG: cja:CJA_2367 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase-associated domain protein; protein of unknown function DUF1605; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein YP_003146349.1 KEGG: dal:Dalk_0951 response regulator receiver modulated diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; SMART: GGDEF domain containing protein; response regulator receiver YP_003146350.1 PFAM: Collagen triple helix repeat; KEGG: bcy:Bcer98_2389 triple helix repeat- containing collagen YP_003146351.1 PFAM: protein of unknown function DUF540; KEGG: asa:ASA_1217 cysteine biosynthesis protein CysZ YP_003146352.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: abo:ABO_0947 chromosome segregation SMC protein YP_003146353.1 KEGG: pau:PA14_44670 cell division protein ZipA; TIGRFAM: cell division protein ZipA; PFAM: ZipA FtsZ-binding region; SMART: ZipA FtsZ-binding region YP_003146354.1 KEGG: maq:Maqu_1167 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase adenylation; BRCT domain protein; helix-hairpin-helix motif; zinc-finger NAD- dependent DNA ligase C4-type; NAD-dependent DNA ligase OB- fold; SMART: NAD-dependent DNA ligase; BRCT domain protein; Helix-hairpin-helix DNA-binding class 1 YP_003146355.1 PFAM: Phosphoglycerate mutase; KEGG: sfr:Sfri_2302 putative phosphohistidine phosphatase, SixA YP_003146356.1 KEGG: ilo:IL1349 RNase E; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein YP_003146357.1 KEGG: apl:APL_1877 23S rRNA pseudouridylate synthase C; TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein YP_003146358.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: swd:Swoo_2034 HAD family hydrolase YP_003146359.1 KEGG: pca:Pcar_2792 hypothetical protein YP_003146360.1 PFAM: polysaccharide deacetylase; KEGG: hch:HCH_05590 xylanase/chitin deacetylase YP_003146361.1 PFAM: glycosyl transferase family 2; KEGG: pca:Pcar_2790 N-glycosyltransferase PgaC YP_003146362.1 KEGG: pca:Pcar_2789 hypothetical protein YP_003146363.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: aci:ACIAD0854 bacterioferritin comigratory protein YP_003146364.1 PFAM: GCN5-related N-acetyltransferase; KEGG: hch:HCH_00477 acetyltransferase YP_003146365.1 PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein; KEGG: eba:ebA148 hypothetical protein YP_003146366.1 PFAM: fructosamine kinase; aminoglycoside phosphotransferase; KEGG: maq:Maqu_0385 fructosamine kinase YP_003146369.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: vsa:VSAL_I2235 Maf-like protein YP_003146370.1 PFAM: protein of unknown function DUF177; KEGG: cja:CJA_1672 predicted metal-binding/nucleic acid-binding protein YP_003146371.1 TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: csa:Csal_1598 LSU ribosomal protein L32P YP_003146372.1 TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein; KEGG: cbc:CbuK_1368 fatty acid/phospholipid synthesis protein YP_003146373.1 KEGG: sml:Smlt1026 putative 3-oxoacyl-[acyl-carrier- protein] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier- protein (ACP)] synthase III YP_003146374.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: ppr:PBPRA1194 acyl carrier protein S- malonyltransferase YP_003146375.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: efe:EFER_1834 3-oxoacyl-[acyl-carrier- protein] reductase YP_003146376.1 TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; KEGG: smt:Smal_0873 acyl carrier protein YP_003146377.1 TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; KEGG: pha:PSHAa1806 3-oxoacyl-[acyl-carrier- protein] synthase II YP_003146378.1 TIGRFAM: aminodeoxychorismate lyase; PFAM: aminotransferase class IV; KEGG: psa:PST_2619 4-amino-4-deoxychorismate lyase YP_003146379.1 PFAM: aminodeoxychorismate lyase; KEGG: psa:PST_2618 hypothetical protein YP_003146380.1 KEGG: cja:CJA_1993 thymidylate kinase; TIGRFAM: thymidylate kinase; PFAM: thymidylate kinase YP_003146381.1 KEGG: tgr:Tgr7_1828 DNA-directed DNA polymerase YP_003146382.1 PFAM: type IV pilus assembly PilZ; KEGG: cja:CJA_1988 type 4 fimbrial biogenesis protein PilZ YP_003146383.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: tgr:Tgr7_1826 TatD-related deoxyribonuclease YP_003146384.1 PFAM: peptidase M16 domain protein; KEGG: amc:MADE_01108 peptidase, M16 family protein YP_003146385.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: bsu:BSU17260 alkaline serine protease YP_003146386.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; S-layer domain protein; KEGG: bsu:BSU17260 alkaline serine protease YP_003146388.1 PFAM: Forkhead-associated protein; GAF domain protein; SMART: Forkhead-associated protein; GAF domain protein; KEGG: aba:Acid345_2718 serine phosphatase YP_003146389.1 PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: serine/threonine protein kinase; tyrosine protein kinase; Tetratricopeptide domain protein; KEGG: sus:Acid_3964 TPR repeat-containing serine/threonin protein kinase YP_003146390.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; SMART: ATP-binding region ATPase domain protein; KEGG: sfu:Sfum_2388 PAS/PAC sensor signal transduction histidine kinase YP_003146391.1 PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: gbm:Gbem_0451 two component transcriptional regulator, LuxR family YP_003146393.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: she:Shewmr4_1596 peptidase S8 and S53, subtilisin, kexin, sedolisin YP_003146394.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: prw:PsycPRwf_1536 acyl-CoA dehydrogenase domain-containing protein YP_003146396.1 KEGG: pfo:Pfl01_1679 C-terminal processing peptidase-1; TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; SMART: peptidase S41; PDZ/DHR/GLGF domain protein YP_003146397.1 PFAM: MscS Mechanosensitive ion channel; KEGG: sdn:Sden_1606 MscS mechanosensitive ion channel YP_003146398.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: sde:Sde_0125 magnesium transporter, putative YP_003146399.1 PFAM: Pyridoxal-dependent decarboxylase; KEGG: mxa:MXAN_5012 group II decarboxylase family protein YP_003146400.1 PFAM: Radical SAM domain protein; KEGG: spl:Spea_0797 radical SAM domain-containing protein YP_003146401.1 PFAM: DGC domain protein; KEGG: psa:PST_3511 hypothetical protein YP_003146402.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_003146403.1 KEGG: pap:PSPA7_3366 hypothetical protein YP_003146404.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein; KEGG: pau:PA14_39710 putative radical-activating enzyme YP_003146405.1 PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: psa:PST_3518 transcription factor for denitrification gene expression elicited by NO YP_003146406.1 KEGG: psa:PST_2102 hypothetical protein YP_003146407.1 PFAM: peptidase U32; KEGG: son:SO_1252 U32 family peptidase YP_003146408.1 phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin YP_003146409.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sil:SPO0680 glyoxalase family protein YP_003146410.1 KEGG: saz:Sama_1568 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_003146411.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: tmz:Tmz1t_1548 UBA/ThiF-type NAD/FAD binding protein YP_003146412.1 PFAM: MgtC/SapB transporter; KEGG: pcr:Pcryo_2508 MgtC/SapB transporter YP_003146413.1 PFAM: Pirin domain protein; KEGG: hch:HCH_05510 pirin-related protein YP_003146414.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pag:PLES_36781 putative short-chain dehydrogenase YP_003146416.1 PFAM: Kelch repeat-containing protein; Kelch repeat protein; SMART: Kelch repeat-containing protein; KEGG: hne:HNE_2761 kelch repeat-containing protein YP_003146417.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: aba:Acid345_4302 methylmalonyl-CoA epimerase YP_003146418.1 PFAM: amino acid permease-associated region; KEGG: sde:Sde_1932 amino acid transporter YP_003146419.1 PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: bha:BH0283 hypothetical protein YP_003146420.1 PFAM: protein of unknown function DUF323; KEGG: pmy:Pmen_4037 hypothetical protein YP_003146421.1 TIGRFAM: methyltransferase; KEGG: rpd:RPD_1758 hypothetical protein YP_003146423.1 PFAM: SNARE associated Golgi protein; KEGG: dol:Dole_1381 putative membrane protein protein YP_003146424.1 PFAM: amidohydrolase; KEGG: swi:Swit_2224 amidohydrolase YP_003146425.1 PFAM: DoxX family protein; KEGG: slo:Shew_2277 DoxX family protein YP_003146426.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: maq:Maqu_0137 LysR family transcriptional regulator YP_003146427.1 PFAM: beta-lactamase; KEGG: aba:Acid345_0612 beta-lactamase YP_003146428.1 KEGG: pzu:PHZ_c1530 hypothetical protein YP_003146429.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: mmr:Mmar10_1198 ECF subfamily RNA polymerase sigma-24 factor YP_003146431.1 TIGRFAM: sodium pump decarboxylase, gamma subunit; PFAM: sodium pump decarboxylase gamma subunit; KEGG: mca:MCA2481 oxaloacetate decarboxylase, gamma subunit YP_003146432.1 catalyzes the formation of pyruvate from oxaloacetate YP_003146433.1 KEGG: sde:Sde_1307 oxaloacetate decarboxylase; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl- CoA/oxaloacetate decarboxylase beta subunit YP_003146434.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: hne:HNE_0404 amidohydrolase family protein YP_003146435.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: hne:HNE_0405 AraC family transcriptional regulator YP_003146436.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: aha:AHA_1471 amino acid transporter LysE YP_003146437.1 KEGG: ppg:PputGB1_1741 hypothetical protein YP_003146439.1 KEGG: ses:SARI_03112 hypothetical protein YP_003146440.1 KEGG: hch:HCH_04880 hypothetical protein YP_003146441.1 KEGG: maq:Maqu_1247 hypothetical protein YP_003146442.1 KEGG: maq:Maqu_1248 hypothetical protein YP_003146443.1 KEGG: mms:mma_1711 hypothetical protein YP_003146444.1 KEGG: rpi:Rpic_2937 TnsA endonuclease YP_003146446.1 PFAM: integrase family protein; KEGG: mms:mma_1757 cointegrate resolution protein S YP_003146447.1 KEGG: ppu:PP_2982 Tn4652, cointegrate resolution protein T, putative YP_003146448.1 KEGG: sde:Sde_1959 hypothetical protein YP_003146449.1 KEGG: tcx:Tcr_1426 efflux family outer membrane protein YP_003146450.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: amc:MADE_02033 secretion protein HlyD YP_003146451.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: tcx:Tcr_1428 heavy metal efflux pump CzcA YP_003146452.1 KEGG: shn:Shewana3_4158 MerR family transcriptional regulator; TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR YP_003146453.1 KEGG: shn:Shewana3_4157 Co/Zn/Cd efflux system component YP_003146454.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: sdn:Sden_1967 cation diffusion facilitator family transporter YP_003146455.1 TIGRFAM: mercuric reductase; PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; Heavy metal transport/detoxification protein; FAD dependent oxidoreductase; KEGG: shn:Shewana3_4311 putative mercuric reductase YP_003146456.1 TIGRFAM: mercuric transport protein periplasmic component; PFAM: Heavy metal transport/detoxification protein; KEGG: shn:Shewana3_4313 mercuric transport protein periplasmic component YP_003146457.1 PFAM: Mercuric transport protein MerT; KEGG: shn:Shewana3_4314 mercuric transporter MerT YP_003146458.1 KEGG: shw:Sputw3181_3205 MerR family transcriptional regulator; TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR YP_003146459.1 PFAM: Penicillinase repressor; KEGG: shw:Sputw3181_0348 transcriptional regulator, TrmB YP_003146460.1 PFAM: peptidase M56 BlaR1; peptidase M48 Ste24p; KEGG: shn:Shewana3_4387 peptidase M56, BlaR1 YP_003146461.1 PFAM: outer membrane efflux protein; KEGG: shn:Shewana3_4386 outer membrane efflux protein YP_003146462.1 PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: spc:Sputcn32_3996 secretion protein HlyD YP_003146463.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: spc:Sputcn32_3995 CzcA family heavy metal efflux protein YP_003146464.1 KEGG: shn:Shewana3_4383 hypothetical protein YP_003146465.1 KEGG: spc:Sputcn32_3993 hypothetical protein YP_003146466.1 KEGG: shn:Shewana3_4381 hypothetical protein YP_003146467.1 KEGG: amc:MADE_00326 L-asparaginase YP_003146471.1 PFAM: phosphate-selective porin O and P; KEGG: mmr:Mmar10_0183 phosphate-selective porin O and P YP_003146472.1 KEGG: amc:MADE_00334 hypothetical protein YP_003146473.1 KEGG: slo:Shew_0570 ubiquinol-cytochrome c reductase, iron-sulfur subunit; TIGRFAM: ubiquinol-cytochrome c reductase, iron- sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein YP_003146474.1 PFAM: sodium/hydrogen exchanger; KEGG: noc:Noc_0960 sodium/hydrogen exchanger YP_003146475.1 KEGG: sde:Sde_1949 putative 2-component sensor protein; TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_003146476.1 KEGG: sde:Sde_1948 response regulator receiver domain-containing protein; TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver YP_003146477.1 KEGG: sde:Sde_1945 hypothetical protein YP_003146478.1 KEGG: sde:Sde_1944 cytochrome c family protein YP_003146479.1 TIGRFAM: copper-resistance protein, CopA family; PFAM: multicopper oxidase type 3; multicopper oxidase type 1; multicopper oxidase type 2; KEGG: ilo:IL1235 multicopper oxidase YP_003146480.1 PFAM: copper resistance B precursor; KEGG: ilo:IL1234 hypothetical protein YP_003146481.1 PFAM: amino acid permease-associated region; KEGG: abo:ABO_1361 amino acid transporter, putative YP_003146483.1 PFAM: protein of unknown function DUF411; KEGG: shn:Shewana3_4286 hypothetical protein YP_003146484.1 PFAM: outer membrane efflux protein; KEGG: ilo:IL1224 outer membrane efflux protein YP_003146485.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: ilo:IL1223 membrane-fusion protein, RND-like efflux system component YP_003146486.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: maq:Maqu_0136 CzcA family heavy metal efflux protein YP_003146487.1 PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR; KEGG: sde:Sde_1934 MerR family transcriptional regulator YP_003146488.1 TIGRFAM: copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: ilo:IL1218 cation transport ATPase YP_003146489.1 KEGG: ilo:IL1217 plastocyanin domain-containing protein YP_003146490.1 KEGG: ilo:IL1221 nitrogen regulatory protein PII YP_003146491.1 KEGG: shn:Shewana3_4143 hypothetical protein YP_003146492.1 KEGG: sde:Sde_1937 hypothetical protein YP_003146493.1 KEGG: sde:Sde_1940 hypothetical protein YP_003146494.1 catalyzes the formation of thymine and 2-deoxy-alpha-D-ribose 1-phosphate from thymidine YP_003146495.1 KEGG: lpc:LPC_2256 phosphoribosylpyrophosphate synthetase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase YP_003146496.1 PFAM: beta-lactamase domain protein; RNA- metabolising metallo-beta-lactamase; KEGG: cps:CPS_2623 metallo-beta-lactamase family protein YP_003146497.1 KEGG: hch:HCH_03561 hypothetical protein YP_003146498.1 KEGG: slo:Shew_3253 hypothetical protein YP_003146499.1 PFAM: acetate and butyrate kinase; KEGG: nmu:Nmul_A0992 acetate kinase YP_003146500.1 PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: ajs:Ajs_1497 D-xylulose 5-phosphate/D- fructose 6-phosphate phosphoketolase YP_003146501.1 PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase; KEGG: pna:Pnap_4507 phospholipase D/transphosphatidylase YP_003146502.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: mes:Meso_3864 protein of unknown function DUF6, transmembrane YP_003146503.1 KEGG: pol:Bpro_3498 nitrogen regulatory protein P- II YP_003146504.1 KEGG: nha:Nham_4420 thioredoxin/glutaredoxin YP_003146505.1 KEGG: pnu:Pnuc_1671 hypothetical protein YP_003146506.1 PFAM: Heavy metal transport/detoxification protein; KEGG: pnu:Pnuc_1672 heavy metal transport/detoxification protein YP_003146507.1 KEGG: tdn:Suden_0061 hypothetical protein YP_003146512.1 TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: psp:PSPPH_1122 molybdenum cofactor biosynthesis protein C YP_003146513.1 TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: hiq:CGSHiGG_02105 molybdopterin synthase small subunit YP_003146514.1 PFAM: molybdopterin biosynthesis MoaE protein; KEGG: rce:RC1_1889 molybdopterin converting factor, subunit 2 YP_003146515.1 KEGG: pmy:Pmen_1743 molybdopterin-guanine dinucleotide biosynthesis protein A YP_003146516.1 KEGG: eca:ECA1395 molybdate transporter ATP-binding protein; TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase YP_003146517.1 TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: maq:Maqu_3546 molybdate ABC transporter, inner membrane subunit YP_003146518.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: mmw:Mmwyl1_0979 molybdenum ABC transporter, periplasmic molybdate-binding protein YP_003146519.1 KEGG: maq:Maqu_3073 molybdenum cofactor biosynthesis protein A; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: molybdenum cofactor synthesis domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003146520.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: sse:Ssed_1958 putative peptidyl-prolyl cis- trans isomerase, PpiC-type YP_003146521.1 KEGG: shl:Shal_0180 respiratory nitrate reductase, gamma subunit; TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase gamma subunit YP_003146522.1 TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase delta subunit; KEGG: shl:Shal_0179 nitrate reductase molybdenum cofactor assembly chaperone YP_003146523.1 TIGRFAM: nitrate reductase, beta subunit; KEGG: shl:Shal_0178 nitrate reductase, beta subunit YP_003146524.1 TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: shl:Shal_0177 nitrate reductase, alpha subunit YP_003146525.1 PFAM: major facilitator superfamily MFS_1; KEGG: hch:HCH_04020 nitrate/nitrite transporter YP_003146526.1 PFAM: major facilitator superfamily MFS_1; KEGG: pau:PA14_13750 nitrite extrusion protein 1 YP_003146527.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: swd:Swoo_2636 integral membrane sensor signal transduction histidine kinase YP_003146528.1 PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: sse:Ssed_1951 putative nitrate/nitrite response regulator; NarL YP_003146529.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: MoeA domain protein domain I and II; MoeA domain protein domain IV; molybdopterin binding domain; KEGG: hch:HCH_04899 molybdopterin biosynthesis protein YP_003146530.1 TIGRFAM: molybdenum cofactor biosynthesis protein B; molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: cps:CPS_4635 molybdenum cofactor biosynthesis protein B YP_003146531.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: psa:PST_3180 molybdopterin biosynthesis protein MoeB YP_003146532.1 PFAM: Citrate transporter; KEGG: cps:CPS_3512 Na+/H+ antiporter NhaD YP_003146533.1 KEGG: sfr:Sfri_2854 hypothetical protein YP_003146534.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: cps:CPS_2003 choline/carnitine/betaine transport family protein YP_003146536.1 KEGG: shn:Shewana3_4144 plastocyanin domain- containing protein YP_003146537.1 TIGRFAM: copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: ilo:IL1218 cation transport ATPase YP_003146539.1 PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR; KEGG: hne:HNE_1380 MerR family transcriptional regulator YP_003146540.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: spc:Sputcn32_1220 regulatory protein, ArsR YP_003146541.1 PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: pat:Patl_3397 protein tyrosine phosphatase YP_003146542.1 TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: sde:Sde_3779 arsenical pump membrane protein, putative YP_003146543.1 KEGG: hch:HCH_05358 hypothetical protein YP_003146544.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: aba:Acid345_0496 endonuclease/exonuclease/phosphatase YP_003146545.1 catalyzes the formation of thymine and 2-deoxy-alpha-D-ribose 1-phosphate from thymidine YP_003146546.1 KEGG: lpc:LPC_2256 phosphoribosylpyrophosphate synthetase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase YP_003146547.1 PFAM: Na+/Picotransporter; KEGG: nis:NIS_1751 phosphate:Na+ symporter YP_003146548.1 PFAM: beta-lactamase domain protein; RNA- metabolising metallo-beta-lactamase; KEGG: hha:Hhal_0828 beta-lactamase domain protein YP_003146549.1 PFAM: Methyltransferase type 12; KEGG: gur:Gura_3509 methyltransferase type 11 YP_003146550.1 PFAM: Aldehyde Dehydrogenase; KEGG: csa:Csal_3191 succinate semialdehyde dehydrogenase YP_003146551.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_003146552.1 PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: bur:Bcep18194_A5434 protein tyrosine phosphatase YP_003146553.1 TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; KEGG: aha:AHA_2775 3-deoxy-D-manno-octulosonate cytidylyltransferase YP_003146554.1 PFAM: protein of unknown function DUF343; KEGG: mca:MCA0634 hypothetical protein YP_003146555.1 KEGG: pin:Ping_0901 tetraacyldisaccharide 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase YP_003146556.1 KEGG: cko:CKO_02156 lipid transporter ATP-binding/permease protein; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase YP_003146557.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: sde:Sde_2060 GTP cyclohydrolase I YP_003146558.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: noc:Noc_2673 MotA/TolQ/ExbB proton channel YP_003146559.1 KEGG: sbp:Sbal223_1287 hypothetical protein YP_003146561.1 KEGG: sml:Smlt4374 hypothetical protein YP_003146562.1 TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; beta-lactamase domain protein; KEGG: mfa:Mfla_2093 DNA internalization-related competence protein ComEC/Rec2 YP_003146563.1 KEGG: vpa:VP0980 hypothetical protein YP_003146564.1 KEGG: swp:swp_1760 lipoprotein releasing system ATP-binding protein LolD; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003146565.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: maq:Maqu_1747 LolC/E family lipoprotein releasing system, transmembrane protein YP_003146566.1 KEGG: hch:HCH_02348 hypothetical protein YP_003146567.1 KEGG: sde:Sde_1679 CBS YP_003146568.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: ilo:IL0915 beta-hexosaminidase YP_003146569.1 PFAM: peptidase M2 peptidyl-dipeptidase A; KEGG: swd:Swoo_2544 peptidyl-dipeptidase A YP_003146570.1 KEGG: she:Shewmr4_2293 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; MASE1 domain protein; SMART: GGDEF domain containing protein YP_003146571.1 TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: sml:Smlt3638 putative transmembrane hemolysin protein YP_003146572.1 KEGG: hch:HCH_04505 signal transduction protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein YP_003146574.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD- dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: asa:ASA_0950 NADH:flavin oxidoreductase/NADH oxidase YP_003146575.1 KEGG: cps:CPS_2585 signal peptide peptidase SppA, 67K type; TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: peptidase S49 YP_003146576.1 PFAM: protein of unknown function UPF0153; KEGG: asa:ASA_2353 hypothetical protein YP_003146577.1 PFAM: protein of unknown function DUF709; KEGG: slo:Shew_2183 hypothetical protein YP_003146578.1 KEGG: aha:AHA_2205 ribonuclease D; TIGRFAM: ribonuclease D; PFAM: 3'-5' exonuclease; HRDC domain protein; SMART: 3'-5' exonuclease; HRDC domain protein YP_003146579.1 PFAM: AMP-dependent synthetase and ligase; KEGG: vsp:VS_2220 long-chain-fatty-acid--CoA ligase YP_003146580.1 PFAM: alpha/beta hydrolase fold; KEGG: lpn:lpg0468 lipase A YP_003146581.1 PFAM: beta-lactamase domain protein; KEGG: pap:PSPA7_0898 hypothetical protein YP_003146582.1 PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: mxa:MXAN_5953 transglutaminase-like superfamily domain protein YP_003146583.1 TIGRFAM: Na+/H+ antiporter NhaC; PFAM: Na+/H+ antiporter NhaC; KEGG: swd:Swoo_4486 Na+/H+ antiporter NhaC YP_003146584.1 KEGG: pzu:PHZ_c1859 imidazolonepropionase YP_003146585.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: smt:Smal_3373 amidohydrolase YP_003146586.1 PFAM: sodium:neurotransmitter symporter; KEGG: cps:CPS_4406 sodium-dependent symporter family protein YP_003146587.1 KEGG: ftn:FTN_0314 hypothetical protein YP_003146588.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pae:PA4199 putative acyl-CoA dehydrogenase YP_003146589.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: ilo:IL1268 Na(+)-linked D-alanine and glycine permease YP_003146590.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: pfo:Pfl01_1195 DNA polymerase IV YP_003146592.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: neu:NE1408 sensory transduction histidine kinase YP_003146593.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: xom:XOO_0385 two-component system regulatory protein YP_003146594.1 KEGG: rfr:Rfer_3686 peptidase YP_003146595.1 PFAM: 17 kDa surface antigen; KEGG: tgr:Tgr7_0164 17 kDa surface antigen YP_003146596.1 PFAM: Transglycosylase-associated protein; KEGG: ses:SARI_01707 hypothetical protein YP_003146597.1 PFAM: AMP-dependent synthetase and ligase; KEGG: hch:HCH_04499 long-chain acyl-CoA synthetases (AMP-forming) YP_003146598.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bat:BAS0663 acetyltransferase YP_003146599.1 KEGG: hypothetical protein YP_003146600.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_003146601.1 PFAM: protein of unknown function DUF299; KEGG: pfl:PFL_1868 hypothetical protein YP_003146602.1 catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism YP_003146603.1 PFAM: Peptidase M23; KEGG: hch:HCH_05221 membrane protein related to metalloendopeptidase YP_003146604.1 PFAM: protein of unknown function DUF195; KEGG: cps:CPS_3589 hypothetical protein YP_003146606.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: swd:Swoo_4648 peptidase S8 and S53 subtilisin kexin sedolisin YP_003146607.1 KEGG: vfm:VFMJ11_A0291 GGDEF family protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; CHASE domain protein; SMART: GGDEF domain containing protein YP_003146608.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sme:SMa1124 membrane protein YP_003146609.1 PFAM: protein of unknown function DUF214; KEGG: sme:SMa1122 putative permease YP_003146610.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sat:SYN_00283 ABC transporter ATP-binding protein YP_003146611.1 KEGG: swp:swp_1914 hypothetical protein YP_003146612.1 KEGG: ppr:PBPRA1532 hypothetical protein YP_003146613.1 KEGG: sbp:Sbal223_2553 hypothetical protein YP_003146614.1 PFAM: RNA-binding S4 domain protein; KEGG: pin:Ping_0366 hypothetical protein YP_003146615.1 KEGG: pna:Pnap_4852 hypothetical protein YP_003146617.1 TIGRFAM: carbon storage regulator; PFAM: carbon storage regulator; KEGG: pat:Patl_3014 carbon storage regulator, CsrA YP_003146618.1 KEGG: slo:Shew_1217 alanyl-tRNA synthetase; TIGRFAM: alanyl-tRNA synthetase; PFAM: alanyl-tRNA synthetase class IIc; phosphoesterase DHHA1; Threonyl/alanyl tRNA synthetase SAD YP_003146619.1 PFAM: regulatory protein RecX; KEGG: pfl:PFL_1232 recombination regulator RecX YP_003146620.1 KEGG: pha:PSHAa0694 RecA protein (recombinase A); TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase YP_003146621.1 PFAM: CinA domain protein; KEGG: ajs:Ajs_0354 CinA domain-containing protein YP_003146622.1 KEGG: vfm:VFMJ11_0536 DNA mismatch repair protein MutS; TIGRFAM: DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS domain protein; MutS II domain protein; MutS IV domain protein; MutS III domain protein; SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein YP_003146623.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: maq:Maqu_2088 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_003146624.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: cps:CPS_0535 amidohydrolase family protein YP_003146625.1 KEGG: she:Shewmr4_1184 hypothetical protein YP_003146626.1 KEGG: pmy:Pmen_1924 hypothetical protein YP_003146627.1 KEGG: shw:Sputw3181_0885 hypothetical protein YP_003146628.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mmr:Mmar10_0239 sulfide-quinone reductase YP_003146629.1 KEGG: cps:CPS_1705 methionine gamma-lyase; TIGRFAM: methionine gamma-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase YP_003146630.1 PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: bcy:Bcer98_0680 AsnC family transcriptional regulator YP_003146631.1 KEGG: dal:Dalk_3606 lipase, putative YP_003146632.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: sse:Ssed_1672 hypothetical protein YP_003146633.1 PFAM: Chorismate mutase; KEGG: bcb:BCB4264_A2960 chorismate mutase/phospho-2- dehydro-3-deoxyheptonate aldolase YP_003146634.1 TIGRFAM: methyltransferase; PFAM: Methyltransferase type 12; KEGG: vpa:VP1045 hypothetical protein YP_003146635.1 TIGRFAM: methyltransferase; PFAM: methyltransferase putative; Methyltransferase type 11; Methyltransferase type 12; KEGG: slo:Shew_2082 putative methyltransferase YP_003146636.1 PFAM: pseudouridine synthase; KEGG: abo:ABO_1194 ribosomal large subunit pseudouridine synthase A YP_003146637.1 KEGG: pmu:PM1834 hypothetical protein YP_003146638.1 PFAM: protein of unknown function UPF0227; KEGG: vpa:VP0969 hypothetical protein YP_003146639.1 KEGG: tgr:Tgr7_1785 transcriptional regulator-like protein YP_003146640.1 KEGG: pha:PSHAa1571 hypothetical protein YP_003146641.1 KEGG: swp:swp_1874 leucyl/phenylalanyl-tRNA-- protein transferase; TIGRFAM: leucyl/phenylalanyl-tRNA/protein transferase; PFAM: leucyl/phenylalanyl-tRNA--protein transferase YP_003146642.1 PFAM: Arginine-tRNA-protein transferase domain protein; KEGG: noc:Noc_2597 arginyl-tRNA-protein transferase YP_003146643.1 KEGG: vsp:VS_1075 translation initiation factor IF- 1; TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein; SMART: RNA binding S1 domain protein YP_003146644.1 KEGG: hch:HCH_02339 ATPase with chaperone activity, ATP-binding subunit; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: AAA ATPase YP_003146645.1 PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: sml:Smlt2335 putative ATP-dependent Clp protease adaptor protein ClpS YP_003146646.1 KEGG: vvy:VVA1328 hypothetical protein YP_003146647.1 PFAM: Phosphoglycerate mutase; KEGG: swi:Swit_3559 putative phosphohistidine phosphatase, SixA YP_003146648.1 PFAM: conserved hypothetical protein; KEGG: pcr:Pcryo_1788 hypothetical protein YP_003146649.1 PFAM: protein of unknown function DUF1508; KEGG: bpt:Bpet2902 hypothetical protein YP_003146650.1 KEGG: pat:Patl_3926 carboxymuconolactone decarboxylase YP_003146651.1 TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; KEGG: ank:AnaeK_1987 peptide methionine sulfoxide reductase YP_003146652.1 PFAM: Peptidase M1 membrane alanine aminopeptidase; Leukotriene A4 hydrolase; peptidase M61 domain protein; KEGG: cps:CPS_3470 neutral zinc metallopeptidase M1 family protein YP_003146653.1 TIGRFAM: cyanophycinase; KEGG: cps:CPS_1870 cyanophycinase YP_003146655.1 TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase class Ic; KEGG: eum:ECUMN_2727 glutamyl-tRNA synthetase YP_003146656.1 PFAM: FAD linked oxidase domain protein; KEGG: maq:Maqu_2818 FAD linked oxidase domain- containing protein YP_003146657.1 KEGG: swp:swp_5046 hypothetical protein YP_003146658.1 KEGG: cps:CPS_2607 GGDEF domain-containing protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Two component regulator propeller; SMART: GGDEF domain containing protein YP_003146659.1 PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: shl:Shal_0087 phospholipid/glycerol acyltransferase YP_003146660.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_003146661.1 PFAM: Colicin V production protein; KEGG: cps:CPS_3799 colicin V production protein YP_003146662.1 PFAM: Sporulation domain protein; KEGG: vpa:VP2187 DedD protein YP_003146663.1 TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase middle domain protein; KEGG: asu:Asuc_1382 FolC bifunctional protein YP_003146664.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: ppr:PBPRA2652 acetyl-CoA carboxylase subunit beta YP_003146665.1 KEGG: sse:Ssed_1652 tRNA-pseudouridine synthase I; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase YP_003146666.1 KEGG: sde:Sde_2082 Tfp pilus assembly protein FimV- like YP_003146667.1 KEGG: mca:MCA2062 aspartate-semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase dimerisation region; Semialdehyde dehydrogenase NAD - binding YP_003146668.1 KEGG: pat:Patl_1643 hypothetical protein YP_003146669.1 TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: pag:PLES_19771 aminopeptidase N YP_003146670.1 KEGG: ilo:IL1587 metal-binding protein YP_003146671.1 KEGG: rso:RSc1797 pyruvate dehydrogenase E1 component alpha subunit oxidoreductase protein; TIGRFAM: pyruvate dehydrogenase (acetyl- transferring) E1 component, alpha subunit; PFAM: dehydrogenase E1 component YP_003146672.1 PFAM: Transketolase central region; Transketolase domain protein; KEGG: noc:Noc_1434 transketolase YP_003146673.1 PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain- containing protein; E3 binding domain protein; KEGG: xca:xccb100_0461 dihydrolipoyllysine-residue acetyltransferase YP_003146675.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: swp:swp_0709 prolyl oligopeptidase YP_003146676.1 KEGG: pat:Patl_4269 gamma-glutamyl kinase; TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase YP_003146677.1 KEGG: pat:Patl_4146 gamma-glutamyl kinase; TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase YP_003146678.1 KEGG: cps:CPS_4833 gamma-glutamyl phosphate reductase; TIGRFAM: gamma-glutamyl phosphate reductase; PFAM: Aldehyde Dehydrogenase YP_003146679.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sse:Ssed_3859 hypothetical protein YP_003146680.1 TIGRFAM: FeS assembly protein IscX; PFAM: protein of unknown function DUF528; KEGG: tgr:Tgr7_2053 hypothetical protein YP_003146681.1 TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: pin:Ping_1329 ferredoxin, 2Fe-2S type, ISC system YP_003146682.1 KEGG: sbc:SbBS512_E2901 Fe-S protein assembly chaperone HscA; TIGRFAM: Fe-S protein assembly chaperone HscA; PFAM: Heat shock protein 70 YP_003146683.1 KEGG: vfm:VFMJ11_0634 Fe-S protein assembly co- chaperone HscB; TIGRFAM: co-chaperone Hsc20; PFAM: HSC20 oligomerisation; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein YP_003146684.1 TIGRFAM: iron-sulfur cluster assembly protein IscA; iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: vsp:VS_0609 HesB family protein YP_003146685.1 TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: rso:RSc1020 scaffold protein YP_003146686.1 TIGRFAM: cysteine desulfurase IscS; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: slo:Shew_2317 cysteine desulfurase IscS YP_003146687.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: aeh:Mlg_1887 BadM/Rrf2 family transcriptional regulator YP_003146688.1 TIGRFAM: serine O-acetyltransferase; KEGG: pat:Patl_1236 serine O-acetyltransferase YP_003146689.1 TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pfl:PFL_4968 RNA methyltransferase YP_003146690.1 PFAM: inositol monophosphatase; KEGG: aha:AHA_1710 inositol-1-monophosphatase YP_003146691.1 KEGG: she:Shewmr4_0614 hypothetical protein YP_003146692.1 PFAM: Electron transfer flavoprotein alpha subunit; Electron transfer flavoprotein alpha/beta-subunit; KEGG: rru:Rru_A3078 electron transfer flavoprotein YP_003146693.1 PFAM: Electron transfer flavoprotein alpha/beta- subunit; KEGG: mmr:Mmar10_2363 electron transfer flavoprotein beta-subunit YP_003146694.1 PFAM: electron transfer flavoprotein-ubiquinone oxidoreductase; FAD dependent oxidoreductase; KEGG: sde:Sde_1999 S6 modification enzyme RimK YP_003146695.1 KEGG: mca:MCA2974 PKD domain-containing protein YP_003146696.1 TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain; KEGG: hch:HCH_00952 maleylacetoacetate isomerase YP_003146697.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: hch:HCH_00953 2-keto-4-pentenoate hydratase/2- oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) YP_003146698.1 PFAM: homogentisate 12-dioxygenase; KEGG: hch:HCH_00954 homogentisate 1,2-dioxygenase YP_003146699.1 KEGG: hch:HCH_00955 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_003146700.1 phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin YP_003146701.1 PFAM: Lytic transglycosylase catalytic; KEGG: cps:CPS_0011 putative soluble lytic murein transglycosylase YP_003146702.1 KEGG: cps:CPS_1654 hypothetical protein YP_003146703.1 KEGG: mca:MCA2737 hypothetical protein YP_003146704.1 TIGRFAM: uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase superfamily; KEGG: vvy:VV0655 uracil-DNA glycosylase YP_003146705.1 KEGG: hch:HCH_03923 ABC-type uncharacterized transport system, periplasmic component YP_003146706.1 KEGG: abo:ABO_2018 sensor histidine kinase/response regulator YP_003146707.1 catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate YP_003146708.1 TIGRFAM: imidazolonepropionase; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: pha:PSHAa2737 imidazolonepropionase YP_003146709.1 TIGRFAM: azurin; PFAM: blue (type 1) copper domain protein; KEGG: mms:mma_2021 azurin YP_003146710.1 PFAM: N-formylglutamate amidohydrolase; KEGG: cps:CPS_4353 N-formylglutamate deformylase YP_003146711.1 KEGG: shl:Shal_0072 histidine utilization repressor; TIGRFAM: histidine utilization repressor; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein DeoR; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003146712.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism YP_003146713.1 KEGG: vvy:VV1952 histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase YP_003146715.1 PFAM: YceI family protein; KEGG: dac:Daci_2227 YceI family protein YP_003146716.1 KEGG: gme:Gmet_0138 hypothetical protein YP_003146717.1 PFAM: peptidase M16 domain protein; KEGG: saz:Sama_3596 pseudouridine synthase, Rsu YP_003146718.1 TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: ATP-citrate lyase/succinyl-CoA ligase; CoA- binding domain protein; KEGG: cja:CJA_1510 succinyl-CoA synthetase alpha chain YP_003146719.1 KEGG: ppf:Pput_1668 succinyl-CoA synthetase subunit beta; TIGRFAM: succinyl-CoA synthetase, beta subunit; PFAM: ATP-grasp domain protein; ATP-citrate lyase/succinyl-CoA ligase; phosphoribosylglycinamide synthetase YP_003146720.1 TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain- containing protein; E3 binding domain protein; KEGG: saz:Sama_1428 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) YP_003146721.1 TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: Transketolase central region; dehydrogenase E1 component; KEGG: amc:MADE_01875 2-oxoglutarate decarboxylase YP_003146722.1 TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: amc:MADE_01874 succinate dehydrogenase catalytic subunit YP_003146723.1 KEGG: esa:ESA_02624 succinate dehydrogenase flavoprotein subunit; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; succinate dehydrogenase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein YP_003146724.1 TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; KEGG: csa:Csal_1214 succinate dehydrogenase subunit D YP_003146725.1 TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: abo:ABO_1500 succinate dehydrogenase, cytochrome b556 subunit YP_003146726.1 KEGG: lpc:LPC_0831 citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase YP_003146727.1 PFAM: tryptophan 23-dioxygenase; KEGG: amc:MADE_02822 tryptophan 2,3-dioxygenase YP_003146728.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: xau:Xaut_0629 glyoxalase/bleomycin resistance protein/dioxygenase YP_003146729.1 KEGG: mmw:Mmwyl1_4412 GAF domain-containing protein YP_003146730.1 PFAM: protein of unknown function DUF1289; KEGG: cbs:COXBURSA331_A0534 hypothetical protein YP_003146731.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_003146732.1 KEGG: lpc:LPC_2722 hypothetical protein YP_003146733.1 PFAM: nitroreductase; KEGG: maq:Maqu_1101 nitroreductase YP_003146736.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: mxa:MXAN_6601 peptidase, S9C (acylaminoacyl- peptidase) subfamily YP_003146737.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: ilo:IL1684 membrane-fusion protein YP_003146738.1 PFAM: acriflavin resistance protein; KEGG: ilo:IL1683 RND family efflux transporter YP_003146739.1 KEGG: hch:HCH_00431 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta YP_003146740.1 PFAM: protein of unknown function DUF6 transmembrane; Protein of unknown function DUF250; Nucleotide-sugar transporter; KEGG: amc:MADE_00423 predicted permease, DMT superfamily protein YP_003146741.1 PFAM: MaoC domain protein dehydratase; KEGG: abu:Abu_1926 MaoC family protein YP_003146742.1 PFAM: HpcH/HpaI aldolase; KEGG: abu:Abu_1925 AMP-dependent synthetase and ligase YP_003146743.1 PFAM: AMP-dependent synthetase and ligase; KEGG: abu:Abu_1925 AMP-dependent synthetase and ligase YP_003146744.1 PFAM: HpcH/HpaI aldolase; KEGG: abu:Abu_1924 hypothetical protein YP_003146745.1 PFAM: HpcH/HpaI aldolase; KEGG: abu:Abu_1927 putative citrate lyase YP_003146746.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: mxa:MXAN_1097 efflux ABC transporter, permease/ATP-binding protein YP_003146747.1 KEGG: bca:BCE_1598 thiol-disulfide oxidoreductase YP_003146748.1 PFAM: DoxX family protein YP_003146749.1 PFAM: protein of unknown function DUF114; KEGG: afw:Anae109_3319 hypothetical protein YP_003146750.1 KEGG: nwi:Nwi_0610 hypothetical protein YP_003146752.1 KEGG: pha:PSHAb0414 putative membrane associated hydrolase YP_003146753.1 KEGG: swd:Swoo_3378 hypothetical protein YP_003146754.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; FAD- binding 9 siderophore-interacting domain protein; KEGG: lpp:lpp0536 hypothetical protein YP_003146755.1 KEGG: amc:MADE_03446 putative orphan protein YP_003146756.1 TIGRFAM: sulfur relay protein TusD/DsrE; PFAM: DsrE family protein; KEGG: vok:COSY_0793 intracellular sulfur oxidation protein DsrE YP_003146757.1 TIGRFAM: sulfur relay protein TusC/DsrF; PFAM: DsrE family protein; KEGG: cja:CJA_1663 DsrE/DsrF-like family YP_003146758.1 TIGRFAM: sulfur relay protein TusB/DsrH; PFAM: DsrH family protein; KEGG: vpa:VP2774 hypothetical protein YP_003146759.1 TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein; KEGG: hip:CGSHiEE_04400 putative dissimilatory sulfite reductase, desulfoviridin, gamma subunit YP_003146760.1 PFAM: toluene tolerance family protein; KEGG: lpc:LPC_2451 signal peptide protein, toluene tolerance protein Ttg2D YP_003146761.1 PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: csa:Csal_1130 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_003146762.1 KEGG: shn:Shewana3_3514 gamma-glutamyltransferase 2; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase YP_003146763.1 PFAM: PspC domain protein; KEGG: smt:Smal_2413 phage shock protein C, PspC YP_003146764.1 PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; Chorismate mutase; KEGG: swd:Swoo_1263 chorismate mutase YP_003146765.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive YP_003146766.1 PFAM: Class I peptide chain release factor; KEGG: tcx:Tcr_0875 class I peptide chain release factor YP_003146767.1 PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: hch:HCH_00522 sulfurtransferase YP_003146769.1 PFAM: protein of unknown function DUF45; KEGG: cps:CPS_4297 hypothetical protein YP_003146770.1 PFAM: Excinuclease ABC C subunit domain protein; KEGG: slo:Shew_0038 excinuclease ABC subunit C YP_003146771.1 PFAM: NLP/P60 protein; KEGG: tgr:Tgr7_1402 NLP/P60 protein YP_003146772.1 PFAM: aminoglycoside phosphotransferase; protein of unknown function DUF227; KEGG: glo:Glov_3019 aminoglycoside phosphotransferase YP_003146773.1 PFAM: protein of unknown function DUF502; KEGG: tgr:Tgr7_0143 hypothetical protein YP_003146774.1 PFAM: protein of unknown function DUF482; KEGG: swp:swp_2873 hypothetical protein YP_003146775.1 PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: slo:Shew_2161 peptidyl-dipeptidase DCP YP_003146776.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: sfr:Sfri_0071 TPR repeat-containing protein YP_003146777.1 KEGG: sfr:Sfri_0070 hypothetical protein YP_003146778.1 KEGG: hch:HCH_06665 hypothetical protein YP_003146779.1 PFAM: PhnA protein; SMART: PhnA protein; KEGG: tcx:Tcr_1109 PhnA protein YP_003146780.1 PFAM: PepSY-associated TM helix domain protein; KEGG: hne:HNE_1050 PepSY-associated TM helix domain- containing protein YP_003146781.1 PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: cja:CJA_3722 TonB-dependent ferric achromobactin receptor YP_003146782.1 KEGG: bba:Bd1307 hypothetical protein YP_003146783.1 TIGRFAM: ATP/cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: noc:Noc_0867 cobalamin adenosyltransferase YP_003146784.1 PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: sdn:Sden_0729 TonB-dependent receptor, plug YP_003146785.1 TIGRFAM: methionine synthase; PFAM: homocysteine S-methyltransferase; Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; dihydropteroate synthase DHPS; Vitamin B12 dependent methionine synthase activation region; KEGG: noc:Noc_1206 B12-dependent methionine synthase YP_003146786.1 KEGG: cja:CJA_1823 hypothetical protein YP_003146787.1 PFAM: outer membrane efflux protein; KEGG: amc:MADE_00318 putative cation efflux protein YP_003146788.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: amc:MADE_00319 putative cation efflux system protein YP_003146789.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: cps:CPS_4858 cation efflux system protein CusA YP_003146790.1 KEGG: sse:Ssed_4039 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase YP_003146791.1 KEGG: asa:ASA_3796 bifunctional aspartate kinase II/homoserine dehydrogenase II; TIGRFAM: aspartate kinase; PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; aspartate/glutamate/uridylate kinase YP_003146792.1 KEGG: asa:ASA_3795 cystathionine gamma-synthase; TIGRFAM: O-succinylhomoserine (thiol)-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein YP_003146793.1 catalyzes the formation of O-acetyl -L-homoserine from L-homoserine and acetyl-CoA YP_003146794.1 when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis YP_003146795.1 TIGRFAM: cysteine synthase A; cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: sml:Smlt3794 putative cysteine synthase A CysK1 YP_003146796.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ilo:IL1709 transcriptional regulator CysB YP_003146797.1 KEGG: pha:PSHAa0344 hypothetical protein YP_003146798.1 KEGG: vpa:VP1063 quinolinate synthetase; TIGRFAM: quinolinate synthetase complex, A subunit; PFAM: Quinolinate synthetase A YP_003146799.1 PFAM: peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: saz:Sama_2091 prolyl oligopeptidase YP_003146800.1 PFAM: Saccharopine dehydrogenase; TrkA-N domain protein; KEGG: lysine-ketoglutarate reductase/saccharopine dehydrogenase; K00293 saccharopine dehydrogenase (NADP+, L-glutamate forming) YP_003146801.1 PFAM: peptidase M14 carboxypeptidase A; SMART: peptidase M14 carboxypeptidase A; KEGG: amc:MADE_01259 predicted carboxypeptidase, Zn dependent YP_003146802.1 TIGRFAM: TonB family protein; KEGG: sde:Sde_2512 periplasmic protein TonB links inner and outer membranes-like YP_003146803.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: hch:HCH_06917 response regulator YP_003146804.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: hch:HCH_06918 signal transduction histidine kinase YP_003146805.1 PFAM: beta-lactamase domain protein; KEGG: nmu:Nmul_A1139 beta-lactamase-like YP_003146806.1 PFAM: NlpBDapX family lipoprotein; KEGG: sbn:Sbal195_2666 NlpB/DapX family lipoprotein YP_003146807.1 TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: mca:MCA0671 dihydrodipicolinate synthase YP_003146808.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: hch:HCH_04908 peroxiredoxin YP_003146809.1 PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; KEGG: noc:Noc_1210 PhoH-like protein YP_003146810.1 PFAM: beta-lactamase; KEGG: sus:Acid_2490 beta-lactamase YP_003146811.1 PFAM: protein of unknown function UPF0118; KEGG: vfm:VFMJ11_2055 transporter YP_003146812.1 PFAM: peptidase M48 Ste24p; KEGG: vsp:VS_2311 putative M48 family membrane- associated zinc metalloprotease precursor YP_003146813.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pat:Patl_2483 redoxin YP_003146814.1 KEGG: mfa:Mfla_2287 hypothetical protein YP_003146815.1 TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN; KEGG: swd:Swoo_4618 ribonuclease BN YP_003146816.1 TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: maq:Maqu_0914 arsenate reductase YP_003146817.1 TIGRFAM: flavoprotein WrbA; PFAM: flavodoxin/nitric oxide synthase; KEGG: cbg:CbuG_0432 trp repressor binding protein YP_003146818.1 KEGG: cps:CPS_3192 hypothetical protein YP_003146819.1 KEGG: chorismate synthase; K01736 chorismate synthase; TIGRFAM: chorismate synthase; PFAM: chorismate synthase YP_003146820.1 TIGRFAM: 3-phosphoshikimate 1- carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1- carboxyvinyltransferase); KEGG: yen:YE1538 3-phosphoshikimate 1- carboxyvinyltransferase YP_003146822.1 KEGG: son:SO_3024 tryptophan synthase subunit alpha; TIGRFAM: tryptophan synthase, alpha subunit; PFAM: tryptophan synthase alpha chain YP_003146823.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_003146824.1 monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate YP_003146825.1 KEGG: sfr:Sfri_1427 anthranilate phosphoribosyltransferase; TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; Glycosyl transferase, family 3-like YP_003146826.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: sse:Ssed_1685 anthranilate synthase component II YP_003146827.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine YP_003146828.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate YP_003146829.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: mrd:Mrad2831_6457 cobyrinic acid ac-diamide synthase YP_003146830.1 PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: pat:Patl_3171 Tfp pilus assembly protein tip- associated adhesin PilY1-like YP_003146831.1 KEGG: abo:ABO_0466 hypothetical protein YP_003146832.1 KEGG: amc:MADE_03025 pilin like competence factor YP_003146833.1 TIGRFAM: type IV pilus modification protein PilV; KEGG: amc:MADE_03026 hypothetical protein YP_003146834.1 KEGG: reh:H16_A2841 type IV pilus assembly protein FimT YP_003146835.1 KEGG: maq:Maqu_0872 general secretion pathway protein H YP_003146836.1 KEGG: xfn:XfasM23_1707 putative type IV pilus assembly protein FimT YP_003146837.1 KEGG: pat:Patl_3171 Tfp pilus assembly protein tip- associated adhesin PilY1-like YP_003146838.1 KEGG: aeh:Mlg_0860 Tfp pilus assembly protein PilX- like protein YP_003146839.1 KEGG: abo:ABO_0465 hypothetical protein YP_003146840.1 TIGRFAM: type IV pilus modification protein PilV; KEGG: pat:Patl_3174 hypothetical protein YP_003146841.1 KEGG: maq:Maqu_0865 hydroxymethylbutenyl pyrophosphate reductase; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein YP_003146842.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: amc:MADE_03028 FKBP-type peptidyl-prolyl cis- trans isomerase (rotamase) YP_003146843.1 TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; KEGG: plu:plu0592 lipoprotein signal peptidase YP_003146844.1 TIGRFAM: isoleucyl-tRNA synthetase; KEGG: sde:Sde_2566 isoleucyl-tRNA synthetase YP_003146845.1 KEGG: pmu:PM1661 bifunctional riboflavin kinase/FMN adenylyltransferase; TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase YP_003146846.1 KEGG: shl:Shal_4007 hypothetical protein YP_003146847.1 TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: ilo:IL1130 MviN-like membrane protein YP_003146848.1 TIGRFAM: ribosomal protein S20; PFAM: ribosomal protein S20; KEGG: pat:Patl_3181 ribosomal protein S20 YP_003146849.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: aba:Acid345_4301 transcriptional regulator, MarR family YP_003146850.1 PFAM: protein of unknown function DUF1329; KEGG: maq:Maqu_2694 hypothetical protein YP_003146851.1 PFAM: Domain of unknown function DUF1791; KEGG: mmr:Mmar10_2942 hypothetical protein YP_003146852.1 TIGRFAM: GTP-binding protein Obg/CgtA; PFAM: GTP1/OBG sub domain protein; GTP-binding protein HSR1-related; KEGG: amc:MADE_03729 GTPase Obg YP_003146853.1 TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: esa:ESA_03578 50S ribosomal protein L27 YP_003146854.1 TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21; KEGG: dsh:Dshi_1460 50S ribosomal protein L21/unknown domain fusion protein YP_003146855.1 PFAM: Polyprenyl synthetase; KEGG: swd:Swoo_1003 polyprenyl synthetase YP_003146856.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP YP_003146857.1 KEGG: tbd:Tbd_1660 diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; CHASE domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein YP_003146858.1 KEGG: pha:PSHAa2494 signal peptide YP_003146859.1 PFAM: pentapeptide repeat protein; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: sde:Sde_0087 hypothetical protein YP_003146860.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: hypothetical protein YP_003146861.1 TIGRFAM: DnaA regulatory inactivator Hda; PFAM: Chromosomal replication initiator DnaA; KEGG: cbd:CBUD_0267 DnaA-related protein YP_003146862.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: noc:Noc_1186 CDP-alcohol phosphatidyltransferase YP_003146863.1 KEGG: ilo:IL1469 hypothetical protein YP_003146864.1 PFAM: phosphoribosyltransferase; KEGG: hch:HCH_00775 hypoxanthine-guanine phosphoribosyltransferase YP_003146865.1 PFAM: OmpA/MotB domain protein; KEGG: cja:CJA_2823 OmpA family protein YP_003146866.1 KEGG: pha:PSHAa1947 phosphoribosylaminoimidazole synthetase (AIR synthetase); TIGRFAM: phosphoribosylformylglycinamidine cyclo- ligase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein YP_003146867.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: ypm:YP_2697 phosphoribosylglycinamide formyltransferase YP_003146868.1 KEGG: ppr:PBPRA1447 hypothetical protein YP_003146869.1 KEGG: sde:Sde_3051 hypothetical protein YP_003146870.1 KEGG: tgr:Tgr7_2620 dCTP deaminase; TIGRFAM: deoxycytidine triphosphate deaminase; PFAM: deoxyUTP pyrophosphatase YP_003146871.1 KEGG: tgr:Tgr7_2621 hypothetical protein YP_003146872.1 TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase, beta subunit; PFAM: tRNA synthetase class I (M); t-RNA-binding domain protein; KEGG: slo:Shew_1573 methionyl-tRNA synthetase YP_003146875.1 KEGG: vha:VIBHAR_03070 hypothetical protein YP_003146876.1 KEGG: mmw:Mmwyl1_1184 hypothetical protein YP_003146877.1 KEGG: spl:Spea_1864 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase YP_003146878.1 PFAM: Chorismate mutase; KEGG: mms:mma_2673 bifunctional chorismate mutase / prephenate dehydratase YP_003146879.1 PFAM: peptidase U32; KEGG: maq:Maqu_3098 peptidase U32 YP_003146880.1 PFAM: peptidase U32; KEGG: hch:HCH_02211 collagenase-like protease YP_003146881.1 PFAM: Sterol-binding domain protein; KEGG: vvy:VV2689 putative lipid carrier protein YP_003146882.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cps:CPS_0484 TonB-dependent receptor YP_003146883.1 TIGRFAM: DNA mismatch endonuclease Vsr; PFAM: DNA mismatch endonuclease vsr; KEGG: bcm:Bcenmc03_0010 DNA mismatch endonuclease Vsr YP_003146884.1 KEGG: bcu:BCAH820_1011 restriction endonuclease YP_003146885.1 PFAM: protein of unknown function DUF524; KEGG: ppr:PBPRA0196 hypothetical protein YP_003146886.1 KEGG: swd:Swoo_4918 hypothetical protein YP_003146887.1 KEGG: bcu:BCAH820_1008 cytosine-specific methyltransferase NlaX; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase YP_003146888.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: abo:ABO_1835 transcriptional regulator, putative YP_003146889.1 KEGG: aeh:Mlg_0762 integration host factor, alpha subunit; TIGRFAM: integration host factor, alpha subunit; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein YP_003146890.1 KEGG: pha:PSHAa1903 phenylalanyl-tRNA synthetase subunit beta; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit YP_003146891.1 TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; KEGG: noc:Noc_1144 phenylalanyl-tRNA synthetase, alpha subunit YP_003146892.1 TIGRFAM: ribosomal protein L20; PFAM: ribosomal protein L20; KEGG: sgl:SG1421 50S ribosomal protein L20 YP_003146893.1 TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: pat:Patl_2497 ribosomal protein L35 YP_003146894.1 TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: abo:ABO_1841 translation initiation factor IF- 3 YP_003146895.1 TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); TGS domain protein; Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase SAD; KEGG: hch:HCH_04580 threonyl-tRNA synthetase YP_003146896.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: aeh:Mlg_1778 glutathione-dependent formaldehyde-activating, GFA YP_003146897.1 PFAM: Excinuclease ABC C subunit domain protein; KEGG: rbo:A1I_00365 endonuclease YP_003146898.1 PFAM: protein of unknown function DUF81; KEGG: sbm:Shew185_0057 hypothetical protein YP_003146899.1 PFAM: Pirin domain protein; KEGG: mpt:Mpe_A2889 putative pirin-like protein YP_003146900.1 KEGG: sde:Sde_1490 hypothetical protein YP_003146901.1 KEGG: har:HEAR2418 hypothetical protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: GGDEF domain containing protein; PAC repeat- containing protein; PAS domain containing protein YP_003146902.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ilo:IL1591 glyoxalase/dioxygenase superfamily protein YP_003146904.1 TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: cytochrome bd type quinol oxidase subunit 2 protein; K00426 cytochrome bd-I oxidase subunit II YP_003146905.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: ilo:IL0041 cytochrome bd-type quinol oxidase, subunit 1 YP_003146907.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: slo:Shew_3241 TonB-dependent receptor YP_003146908.1 KEGG: swp:swp_0164 PKD YP_003146910.1 KEGG: nmc:NMC1830 lactoylglutathione lyase; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_003146911.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis YP_003146912.1 Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A) YP_003146913.1 KEGG: psa:PST_0954 hypothetical protein YP_003146914.1 PFAM: peptidase T2 asparaginase 2; KEGG: mxa:MXAN_1160 asparaginase family protein YP_003146916.1 KEGG: hypothetical protein YP_003146917.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: swd:Swoo_2741 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_003146918.1 PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: sme:SMa1956 hypothetical protein YP_003146919.1 PFAM: flavodoxin/nitric oxide synthase; KEGG: mmr:Mmar10_1090 NADPH-dependent FMN reductase YP_003146920.1 PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: maq:Maqu_0456 BFD/(2Fe-2S)-binding domain- containing protein YP_003146921.1 TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: sde:Sde_2432 bacterioferritin YP_003146922.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: asa:ASA_1107 glycerophosphoryl diester phosphodiesterase YP_003146923.1 PFAM: protein of unknown function DUF88; KEGG: spc:Sputcn32_0704 hypothetical protein YP_003146924.1 TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: cko:CKO_01665 hypothetical protein YP_003146925.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: hha:Hhal_0809 ABC transporter related YP_003146926.1 KEGG: ppg:PputGB1_4236 ribonucleotide-diphosphate reductase subunit alpha; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit; PFAM: ribonucleotide reductase large subunit; ATP- cone domain protein; Ribonucleotide reductase large subunit domain protein YP_003146927.1 PFAM: ribonucleotide reductase; KEGG: sde:Sde_2459 ribonucleotide-diphosphate reductase subunit beta YP_003146929.1 KEGG: sse:Ssed_2554 proprotein convertase, P YP_003146930.1 KEGG: slo:Shew_2272 hypothetical protein YP_003146931.1 PFAM: NERD domain protein; KEGG: sun:SUN_1494 hypothetical protein YP_003146933.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: afr:AFE_1394 RNA polymerase sigma-E factor YP_003146934.1 KEGG: sml:Smlt4580 putative transmembrane protein YP_003146935.1 PFAM: beta-lactamase; KEGG: aba:Acid345_0612 beta-lactamase YP_003146936.1 KEGG: saz:Sama_3600 putative diguanylate phosphodiesterase; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein YP_003146937.1 KEGG: sat:SYN_00670 hypothetical protein YP_003146938.1 KEGG: wsu:WS1162 hypothetical protein YP_003146939.1 KEGG: wsu:WS1161 hypothetical protein YP_003146940.1 PFAM: Ion transport 2 domain protein; KEGG: ppw:PputW619_3025 ion transport 2 domain- containing protein YP_003146941.1 PFAM: manganese and iron superoxide dismutase; KEGG: pat:Patl_1395 superoxide dismutase YP_003146942.1 KEGG: cps:CPS_4321 hypothetical protein YP_003146943.1 PFAM: Spermine synthase; KEGG: pha:PSHAb0034 putative spermine/spermidine synthase protein YP_003146944.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: ilo:IL0056 DNA-binding HTH domain-protein YP_003146945.1 PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein; KEGG: ilo:IL0219 cystathionine gamma-synthase YP_003146947.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: ilo:IL0218 cysteine synthase B YP_003146948.1 PFAM: Transketolase central region; Transketolase domain protein; dehydrogenase E1 component; KEGG: lpp:lpp2633 hypothetical protein YP_003146949.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; peptidase domain protein; proteinase inhibitor I9 subtilisin propeptide; KEGG: swd:Swoo_2373 peptidase S8 and S53 subtilisin kexin sedolisin YP_003146950.1 PFAM: AbgT putative transporter; C4-dicarboxylate anaerobic carrier; short chain fatty acid transporter; KEGG: pha:PSHAa0989 transporter YP_003146951.1 PFAM: protein of unknown function DUF980; KEGG: sbp:Sbal223_1355 protein of unknown function DUF980 YP_003146952.1 KEGG: ppr:PBPRB0858 hypothetical protein YP_003146953.1 PFAM: HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: pfl:PFL_5773 hypothetical protein YP_003146954.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: cps:CPS_4613 membrane protein YP_003146955.1 PFAM: OsmC family protein; KEGG: sfu:Sfum_4048 OsmC family protein YP_003146956.1 PFAM: peptidase M14 carboxypeptidase A; SMART: peptidase M14 carboxypeptidase A; KEGG: Hypothetical protein CBG05158 YP_003146958.1 PFAM: fumarate lyase; KEGG: ilo:IL0937 fumarate hydratase YP_003146959.1 PFAM: SlyX family protein; KEGG: cja:CJA_1330 host factor for lysis of phiX174 infection-related protein YP_003146960.1 PFAM: ABC-2 type transporter; KEGG: sus:Acid_1494 ABC-2 type transporter YP_003146961.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcy:Bcer98_0215 ABC transporter-related protein YP_003146962.1 PFAM: SEC-C motif domain protein; KEGG: pin:Ping_1103 SecC motif-containing protein YP_003146963.1 KEGG: neu:NE0265 hypothetical protein YP_003146964.1 PFAM: UbiA prenyltransferase; KEGG: cps:CPS_4233 UbiA prenyltransferase family protein YP_003146965.1 PFAM: Excinuclease ABC C subunit domain protein; KEGG: fph:Fphi_0656 endonuclease YP_003146966.1 KEGG: tmz:Tmz1t_1160 hypothetical protein YP_003146967.1 PFAM: putative exonuclease RdgC; KEGG: aha:AHA_3048 recombination associated protein YP_003146968.1 PFAM: peptidylprolyl isomerase FKBP-type; FKBP-type peptidyl-prolyl isomerase domain protein; KEGG: amc:MADE_00743 FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase) YP_003146969.1 KEGG: rfr:Rfer_1265 methylation YP_003146970.1 KEGG: pat:Patl_2384 hypothetical protein YP_003146971.1 KEGG: csa:Csal_1644 hypothetical protein YP_003146972.1 KEGG: amc:MADE_01799 hypothetical protein YP_003146973.1 PFAM: small multidrug resistance protein; KEGG: mmw:Mmwyl1_1141 small multidrug resistance protein YP_003146974.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pat:Patl_2618 LysR family transcriptional regulator YP_003146975.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pat:Patl_2619 short chain dehydrogenase YP_003146977.1 PFAM: small multidrug resistance protein; KEGG: mmw:Mmwyl1_1141 small multidrug resistance protein YP_003146978.1 KEGG: aha:AHA_1047 hypothetical protein YP_003146979.1 KEGG: cha:CHAB381_1410 cold-shock protein, DNA- binding YP_003146981.1 KEGG: pin:Ping_2352 hypothetical protein YP_003146982.1 PFAM: MltA-interacting MipA family protein; KEGG: maq:Maqu_1423 MltA-interacting MipA family protein YP_003146984.1 PFAM: OmpA/MotB domain protein; KEGG: nwi:Nwi_1814 OmpA/MotB YP_003146985.1 KEGG: rru:Rru_A2661 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; SMART: GGDEF domain containing protein YP_003146986.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; Peptidoglycan-binding domain 1 protein; KEGG: sde:Sde_2893 hypothetical protein YP_003146987.1 PFAM: Peptidase M15A; protein of unknown function DUF882; KEGG: dal:Dalk_3478 peptidase M15A YP_003146988.1 KEGG: dde:Dde_1621 hypothetical protein YP_003146989.1 PFAM: peptidase C26; glutamine amidotransferase class-I; KEGG: sde:Sde_2941 glutamine amidotransferase related enzyme YP_003146990.1 KEGG: sml:Smlt0086 hypothetical protein YP_003146991.1 KEGG: saz:Sama_0656 hypothetical protein YP_003146992.1 KEGG: shl:Shal_0094 peptidase M6 immune inhibitor A; TIGRFAM: M6 family metalloprotease domain protein; PFAM: peptidase M6 immune inhibitor A; PKD domain containing protein; SMART: PKD domain containing protein YP_003146993.1 KEGG: shl:Shal_0093 hypothetical protein YP_003146994.1 PFAM: alpha/beta hydrolase fold; KEGG: mmr:Mmar10_1592 peptidase S15 YP_003146995.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bca:BCE_5169 DNA-binding protein YP_003146997.1 PFAM: protein of unknown function DUF885; KEGG: shl:Shal_4227 hypothetical protein YP_003146998.1 PFAM: RDD domain containing protein; KEGG: vch:VC2498 hypothetical protein YP_003146999.1 KEGG: sbp:Sbal223_1100 histidine kinase YP_003147000.1 PFAM: permease YjgP/YjgQ family protein; KEGG: she:Shewmr4_2825 permease YjgP/YjgQ family protein YP_003147001.1 PFAM: permease YjgP/YjgQ family protein; KEGG: swd:Swoo_1077 permease YjgP/YjgQ family protein YP_003147002.1 PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: tgr:Tgr7_2140 leucyl aminopeptidase YP_003147003.1 PFAM: DNA polymerase III chi subunit HolC; KEGG: vsa:VSAL_I0525 DNA polymerase III, chi subunit YP_003147004.1 PFAM: Methyltransferase type 12; Methyltransferase type 11; KEGG: eta:ETA_25830 hypothetical protein YP_003147005.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_003147006.1 KEGG: mpt:Mpe_A1638 hypothetical protein YP_003147007.1 KEGG: bbt:BBta_4042 hypothetical protein YP_003147008.1 catalyzes the 4-phospho-L-aspartate from L-aspartate and the formation of lysine from meso-2,6-diaminoheptanedioate YP_003147009.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: shm:Shewmr7_1307 tRNA-adenosine deaminase YP_003147010.1 TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; PFAM: GMP synthase domain protein; glutamine amidotransferase class-I; KEGG: kpe:KPK_1284 GMP synthase (glutamine- hydrolyzing) YP_003147011.1 KEGG: mfa:Mfla_1141 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein; SMART: CBS domain containing protein YP_003147012.1 KEGG: vfm:VFMJ11_0650 exodeoxyribonuclease VII, large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type YP_003147013.1 KEGG: sde:Sde_1824 hypothetical protein YP_003147014.1 KEGG: ilo:IL2030 GTP-binding protein EngA; TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Miro domain protein; SMART: AAA ATPase YP_003147015.1 KEGG: ppr:PBPRA0766 outer membrane protein assembly complex subunit YfgL; TIGRFAM: outer membrane assembly lipoprotein YfgL; PFAM: Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone YP_003147016.1 KEGG: saz:Sama_2363 hypothetical protein YP_003147017.1 KEGG: set:SEN2502 histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein YP_003147018.1 KEGG: hch:HCH_04456 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4- diphosphate synthase; PFAM: IspG family protein YP_003147019.1 KEGG: spe:Spro_3610 hypothetical protein YP_003147020.1 KEGG: aha:AHA_1757 type IV pilus biogenesis/stability protein PilW; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein YP_003147021.1 TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: pmu:PM2007 hypothetical protein YP_003147022.1 KEGG: amc:MADE_01364 nucleoside diphosphate kinase; PFAM: nucleoside diphosphate kinase; SMART: nucleoside diphosphate kinase YP_003147023.1 KEGG: bsu:BSU11130 intracellular proteinase inhibitor BsuPI YP_003147024.1 TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: ppu:PP_1226 ExsB protein YP_003147025.1 PFAM: Radical SAM domain protein; KEGG: lpc:LPC_1527 radical activating enzyme YP_003147026.1 KEGG: pat:Patl_2937 tetratricopeptide TPR_2; TIGRFAM: tol-pal system protein YbgF; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein YP_003147027.1 TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: aby:ABAYE0901 peptidoglycan-associated lipoprotein precursor YP_003147028.1 TIGRFAM: Tol-Pal system beta propeller repeat protein TolB; PFAM: TolB domain protein; WD40 domain protein beta Propeller; KEGG: ilo:IL1080 periplasmic component of the Tol biopolymer transport system YP_003147029.1 TIGRFAM: protein TolA; PFAM: Tol-Pal system TolA; KEGG: ilo:IL1081 TolA-like protein YP_003147030.1 TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ilo:IL1082 biopolymer transport protein YP_003147031.1 TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: shl:Shal_1688 Tol-Pal system TolQ YP_003147032.1 TIGRFAM: tol-pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: pat:Patl_2943 4-hydroxybenzoyl-CoA thioesterase YP_003147033.1 KEGG: vch:VC1845 Holliday junction DNA helicase B; TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: AAA ATPase central domain protein; Holliday junction DNA helicase RuvB domain; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_003147034.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tgr:Tgr7_0690 ABC transporter related YP_003147036.1 PFAM: thioesterase superfamily protein; KEGG: sbp:Sbal223_3413 thioesterase superfamily protein YP_003147037.1 KEGG: GF24392 gene product from transcript GF24392- RA YP_003147038.1 KEGG: eli:ELI_10520 hypothetical protein YP_003147039.1 PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; KEGG: mmw:Mmwyl1_1536 RNP-1 like RNA-binding protein YP_003147041.1 KEGG: bcb:BCB4264_A3327 hypothetical protein YP_003147042.1 KEGG: bch:Bcen2424_1378 diguanylate cyclase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; SMART: GGDEF domain containing protein; GAF domain protein YP_003147043.1 KEGG: cja:CJA_1030 Holliday junction DNA helicase RuvA; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein RuvA domain I; RuvA domain protein; SMART: Helix-hairpin-helix DNA-binding class 1 YP_003147044.1 KEGG: shm:Shewmr7_2078 crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC YP_003147045.1 PFAM: protein of unknown function DUF28; KEGG: hch:HCH_04926 hypothetical protein YP_003147046.1 TIGRFAM: aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); tRNA synthetase class II (G H P and S); GAD domain protein; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: pat:Patl_2948 aspartyl-tRNA synthetase YP_003147047.1 PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: sfr:Sfri_2267 phospholipid/glycerol acyltransferase YP_003147048.1 PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: ilo:IL1576 outer membrane protein YP_003147049.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica. YP_003147050.1 PFAM: Amidohydrolase 3; KEGG: saz:Sama_3132 metal-dependent amidohydrolase with the TIM-barrel fold YP_003147052.1 TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); YbaK/prolyl-tRNA synthetase associated region; Anticodon- binding domain protein; KEGG: pat:Patl_1276 prolyl-tRNA synthetase YP_003147053.1 PFAM: Lytic transglycosylase catalytic; KEGG: hch:HCH_04774 lytic murein transglycosylase YP_003147054.1 PFAM: Patatin; KEGG: abo:ABO_1041 hypothetical protein YP_003147055.1 KEGG: lpc:LPC_1632 adenosylhomocysteinase YP_003147057.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; Protein of unkown function DUF1946 PP-loop ATpase; KEGG: ecq:ECED1_0194 tRNA(Ile)-lysidine synthetase YP_003147058.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: acetyl-CoA carboxylase alpha subunit; KEGG: aha:AHA_1189 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit YP_003147059.1 PFAM: Ada metal-binding domain protein; AlkA domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; HhH-GPD family protein; KEGG: csa:Csal_2795 transcriptional regulator Ada / DNA-3-methyladenine glycosylase II / DNA-O6-methylguanine-- protein-cysteine S-methyltransferase YP_003147060.1 KEGG: pin:Ping_1414 methylated-DNA--protein- cysteine methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding; methylguanine DNA methyltransferase ribonuclease domain protein YP_003147061.1 KEGG: swp:swp_3307 transferase hexapeptide repeat protein YP_003147062.1 KEGG: dol:Dole_0490 pyrrolo-quinoline quinone YP_003147063.1 KEGG: eli:ELI_02905 hypothetical protein YP_003147064.1 KEGG: gur:Gura_3576 hypothetical protein YP_003147065.1 PFAM: ThiJ/PfpI domain protein; KEGG: psa:PST_0875 ThiJ/PfpI family protein YP_003147066.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: saz:Sama_2354 hypothetical protein YP_003147067.1 KEGG: mpt:Mpe_A0808 hypothetical protein YP_003147068.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: swi:Swit_1105 amidohydrolase YP_003147070.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: saz:Sama_0475 putative oxidoreductase YP_003147071.1 KEGG: tmz:Tmz1t_0994 hypothetical protein YP_003147073.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: cja:CJA_3805 helix-turn-helix domain protein YP_003147074.1 KEGG: mmr:Mmar10_0017 hypothetical protein YP_003147075.1 KEGG: shm:Shewmr7_2693 DNA polymerase III subunit alpha; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein YP_003147076.1 PFAM: ribonuclease HII/HIII; KEGG: pag:PLES_13931 ribonuclease HII YP_003147077.1 KEGG: saz:Sama_1152 lipid-A-disaccharide synthase; TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19 YP_003147078.1 KEGG: pat:Patl_1261 acyl-(acyl-carrier-protein)-- UDP-N-acetylglucosamine O-acyltransferase; TIGRFAM:acyl-[acyl-carrier-protein]--UDP-N-acetylglu cosamineO-acyltransferase; PFAM: transferase hexapeptide repeat containing protein YP_003147079.1 TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: spl:Spea_2874 beta-hydroxyacyl-(acyl-carrier- protein) dehydratase FabZ YP_003147080.1 TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase LpxD; transferase hexapeptide repeat containing protein; KEGG: ent:Ent638_0717 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_003147081.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: pmr:PMI2276 outer membrane protein YP_003147082.1 TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: spl:Spea_2877 surface antigen (D15) YP_003147083.1 KEGG: swd:Swoo_3274 membrane-associated zinc metalloprotease; TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein YP_003147084.1 KEGG: cja:CJA_1118 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain protein YP_003147085.1 PFAM: phosphatidate cytidylyltransferase; KEGG: ilo:IL0840 CDP-diglyceride synthetase YP_003147086.1 KEGG: nma:NMA0081 putative undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase YP_003147087.1 TIGRFAM: ribosome recycling factor; PFAM: ribosome recycling factor; KEGG: spl:Spea_2882 ribosome recycling factor YP_003147088.1 TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: vha:VIBHAR_03235 uridylate kinase YP_003147089.1 TIGRFAM: translation elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B dimerisation; ubiquitin-associated- domain-containing protein; KEGG: amc:MADE_01373 elongation factor Ts YP_003147090.1 TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: aha:AHA_1173 ribosomal protein S2 YP_003147092.1 PFAM: fatty acid desaturase; KEGG: rlt:Rleg2_0069 fatty acid desaturase YP_003147093.1 KEGG: bat:BAS3213 hypothetical protein YP_003147094.1 KEGG: bpt:Bpet2957 hypothetical protein YP_003147095.1 KEGG: sbl:Sbal_3383 MORN repeat-containing protein YP_003147097.1 PFAM: protein of unknown function DUF1428; KEGG: lpp:lpp2085 hypothetical protein YP_003147098.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: ilo:IL0846 methionine aminopeptidase YP_003147099.1 KEGG: pau:PA14_17040 PII uridylyl-transferase; TIGRFAM: protein-P-II uridylyltransferase; PFAM: GlnD PII-uridylyltransferase; metal-dependent phosphohydrolase HD sub domain; amino acid-binding ACT domain protein; SMART: metal-dependent phosphohydrolase HD region YP_003147100.1 TIGRFAM:2,3,4,5-tetrahydropyridine-2, 6-dicarboxylate N-succinyltransferase; KEGG: prw:PsycPRwf_0897 2,3,4,5-tetrahydropyridine- 2-carboxylate N-succinyltransferase YP_003147101.1 PFAM: arsenate reductase and related; KEGG: sdn:Sden_1815 hypothetical protein YP_003147102.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica. YP_003147103.1 PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: ppr:PBPRA0843 putative D,D-carboxypeptidase- related protein YP_003147105.1 TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: sde:Sde_1358 helix-turn-helix, AraC type YP_003147106.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: sse:Ssed_0770 enoyl-CoA hydratase/isomerase YP_003147107.1 KEGG: tgr:Tgr7_0956 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease YP_003147108.1 PFAM: ribonuclease H; KEGG: bcs:BCAN_A0484 ribonuclease H YP_003147109.1 KEGG: pha:PSHAa1965 S-adenosyl-L-methionine- dependent methyltransferase YP_003147110.1 KEGG: cps:CPS_1999 metallo-beta-lactamase family protein; TIGRFAM: hydroxyacylglutathione hydrolase; PFAM: beta-lactamase domain protein YP_003147111.1 PFAM: Lytic transglycosylase catalytic; Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: cps:CPS_1998 putative membrane-bound lytic murein transglycosylase YP_003147112.1 KEGG: pat:Patl_2950 ABC-type Na+ efflux pump, permease component YP_003147113.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pha:PSHAa1626 sodium ABC exporter ATP-binding protein YP_003147114.1 PFAM: conserved hypothetical protein; KEGG: aha:AHA_1882 hypothetical protein YP_003147115.1 PFAM: protein of unknown function DUF463 YcjX family protein; KEGG: ppr:PBPRA2436 putative ATPase YP_003147117.1 SMART: Tetratricopeptide domain protein; KEGG: rce:RC1_0804 TPR domain protein YP_003147118.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: ilo:IL1855 TonB-like periplasmic protein YP_003147119.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: amc:MADE_02811 biopolymer transport protein YP_003147120.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: pha:PSHAa1189 TonB system transport protein ExbB2 YP_003147121.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: ilo:IL1858 TonB system biopolymer transport component YP_003147122.1 KEGG: rce:RC1_0799 TonB system biopolymer transport component, putative YP_003147124.1 PFAM: extracellular solute-binding protein family 5; KEGG: dppA; periplasmic dipeptide transport protein; K02035 peptide/nickel transport system substrate- binding protein YP_003147125.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pst:PSPTO_4562 dipeptide ABC transporter, permease protein YP_003147126.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pmy:Pmen_0839 binding-protein-dependent transport systems inner membrane component YP_003147127.1 KEGG: eca:ECA4391 dipeptide transporter ATP-binding subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_003147128.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hap:HAPS_0940 dipeptide transporter ATP-binding subunit YP_003147129.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pat:Patl_3132 PpiC-type peptidyl-prolyl cis- trans isomerase YP_003147130.1 PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: ilo:IL1002 nucleoid DNA-binding protein HU- beta YP_003147131.1 KEGG: slo:Shew_2506 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: peptidase S16 lon domain protein; AAA ATPase YP_003147132.1 KEGG: pmy:Pmen_2051 ATP-dependent protease ATP-binding subunit; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit ClpX; PFAM: ATPase AAA-2 domain protein; zinc finger C4 domain protein; SMART: AAA ATPase YP_003147133.1 PFAM: metallophosphoesterase; KEGG: sus:Acid_1441 metallophosphoesterase YP_003147134.1 KEGG: afw:Anae109_3730 ATP/ADP translocase-like protein YP_003147135.1 KEGG: aeh:Mlg_2288 ATP-dependent Clp protease proteolytic subunit ClpP; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14 ClpP YP_003147136.1 TIGRFAM: trigger factor; PFAM: trigger factor domain; trigger factor domain protein; peptidylprolyl isomerase FKBP-type; KEGG: vha:VIBHAR_01416 trigger factor YP_003147137.1 PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: hch:HCH_02155 5,10-methylene-tetrahydrofolate dehydrogenase/methenyl tetrahydrofolate cyclohydrolase YP_003147138.1 KEGG: asu:Asuc_0561 SNARE associated Golgi protein YP_003147139.1 PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: noc:Noc_1727 phospholipid/glycerol acyltransferase YP_003147140.1 PFAM: phosphatidate cytidylyltransferase; KEGG: ypm:YP_0865 putative phosphatidate cytidylyltransferase YP_003147141.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: pfl:PFL_6195 CDP-alcohol phosphatidyltransferase family protein YP_003147142.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: hch:HCH_00179 HTH domain-containing protein YP_003147143.1 KEGG: vvy:VV1362 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia; Cysteinyl-tRNA synthetase class Ia DALR; tRNA synthetase class I (M) YP_003147144.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: amc:MADE_01976 peptidyl-prolyl cis-trans isomerase B YP_003147145.1 TIGRFAM: UDP-2,3-diacylglucosamine hydrolase; PFAM: metallophosphoesterase; KEGG: tgr:Tgr7_0933 UDP-2,3-diacylglucosamine hydrolase YP_003147146.1 PFAM: protein of unknown function DUF924; KEGG: pla:Plav_1662 hypothetical protein YP_003147147.1 KEGG: ppg:PputGB1_3291 hypothetical protein YP_003147148.1 alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family YP_003147149.1 PFAM: tRNA-hydroxylase; KEGG: abo:ABO_1203 tRNA-(ms(2)io(6)a)-hydroxylase YP_003147150.1 PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: mfa:Mfla_1839 transglutaminase-like protein YP_003147151.1 PFAM: protein of unknown function DUF58; KEGG: pap:PSPA7_2280 hypothetical protein YP_003147152.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: psa:PST_1907 MoxR-like protein YP_003147153.1 KEGG: smt:Smal_0271 hypothetical protein YP_003147154.1 KEGG: amc:MADE_03114 outer membrane protein, porin family YP_003147156.1 TIGRFAM: fatty acid oxidation complex, alpha subunit FadJ; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: slo:Shew_2425 multifunctional fatty acid oxidation complex subunit alpha YP_003147157.1 FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth YP_003147158.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: cja:CJA_2162 MoxR-like protein YP_003147159.1 PFAM: protein of unknown function DUF58; KEGG: swd:Swoo_3029 hypothetical protein YP_003147160.1 KEGG: lpf:lpl2769 hypothetical protein YP_003147161.1 PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: pat:Patl_1659 von Willebrand factor, type A YP_003147162.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pat:Patl_1658 TPR repeat-containing protein YP_003147163.1 KEGG: pau:PA14_24380 hypothetical protein YP_003147164.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: smt:Smal_1799 short-chain dehydrogenase/reductase SDR YP_003147166.1 PFAM: NAD-glutamate dehydrogenase; KEGG: slo:Shew_1809 NAD-glutamate dehydrogenase YP_003147167.1 KEGG: pat:Patl_2001 hypothetical protein YP_003147168.1 KEGG: rce:RC1_3444 hypothetical protein YP_003147169.1 PFAM: protein of unknown function DUF1329; KEGG: cps:CPS_2805 hypothetical protein YP_003147170.1 PFAM: protein of unknown function DUF1302; KEGG: slo:Shew_1805 hypothetical protein YP_003147172.1 KEGG: smt:Smal_2622 hypothetical protein YP_003147173.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xca:xccb100_2774 ABC transporter ATP-binding protein YP_003147174.1 PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: smt:Smal_2620 transcriptional regulator, GntR family YP_003147175.1 PFAM: conserved hypothetical protein; KEGG: swp:swp_4959 membrane spanning protein, putative YP_003147176.1 PFAM: NUDIX hydrolase; Zinc ribbon NADH pyrophosphatase; NADH pyrophosphatase-like; KEGG: sfu:Sfum_1412 NUDIX hydrolase YP_003147178.1 TIGRFAM: lysyl-tRNA synthetase-related protein GenX; PFAM: tRNA synthetase class II (D K and N); KEGG: pat:Patl_0442 lysyl-tRNA synthetase-related protein GenX YP_003147179.1 TIGRFAM: translation elongation factor P; PFAM: Elongation factor P; Elongation factor P/YeiP protein; Elongation factor KOW domain protein; KEGG: tcx:Tcr_1741 translation elongation factor P YP_003147180.1 KEGG: pmu:PM0099 hypothetical protein; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein YP_003147181.1 KEGG: hch:HCH_05401 GTPase - translation elongation factors YP_003147182.1 KEGG: maq:Maqu_2785 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold domain protein; SMART: GGDEF domain containing protein; EAL domain protein; PAS domain containing protein YP_003147183.1 KEGG: scl:sce0663 hypothetical protein; TIGRFAM: phosphoserine phosphatase SerB; HAD- superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase YP_003147185.1 KEGG: pat:Patl_0509 DNA topoisomerase IV subunit A; TIGRFAM: DNA topoisomerase IV, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; SMART: DNA gyrase/topoisomerase IV subunit A YP_003147186.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_003147187.1 PFAM: metallophosphoesterase; Calcineurin phosphoesterase domain protein; KEGG: maq:Maqu_0806 calcineurin phosphoesterase C- terminal domain-containing protein YP_003147188.1 PFAM: protein of unknown function DUF1249; KEGG: hch:HCH_05993 hypothetical protein YP_003147189.1 PFAM: NUDIX hydrolase; KEGG: pat:Patl_0431 nucleoside diphosphate pyrophosphatase YP_003147190.1 PFAM: protein-L-isoaspartate(D-aspartate) O- methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: mfa:Mfla_2531 protein-L-isoaspartate(D- aspartate) O-methyltransferase YP_003147191.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: ilo:IL1957 outer membrane channel protein YP_003147192.1 PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: cbu:CBU_0063 3-deoxy-D-manno-octulosonic-acid transferase family protein YP_003147193.1 PFAM: protein of unknown function UPF0125; KEGG: eum:ECUMN_2942 hypothetical protein YP_003147194.1 PFAM: cyclase/dehydrase; KEGG: vfm:VFMJ11_2138 cyclase/dehydrase YP_003147195.1 TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; KEGG: maq:Maqu_3370 SsrA-binding protein YP_003147196.1 PFAM: Peptidoglycan-binding LysM; Tetratricopeptide TPR_2 repeat protein; SMART: Peptidoglycan-binding LysM; KEGG: azo:azo0897 hypothetical protein YP_003147197.1 PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; histidine kinase HAMP region domain protein; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: azo:azo0898 putative serine/threonine protein kinase YP_003147198.1 PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: azo:azo0899 hypothetical protein YP_003147199.1 PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: sde:Sde_1774 serine/threonine protein phosphatase-like YP_003147200.1 PFAM: electron transport protein SCO1/SenC; KEGG: pha:PSHAa1475 hypothetical protein YP_003147201.1 PFAM: protein of unknown function DUF323; KEGG: pha:PSHAa1476 hypothetical protein YP_003147202.1 KEGG: pha:PSHAa1477 nitrite reductase; TIGRFAM: nitrite reductase, copper-containing; PFAM: multicopper oxidase type 3; blue (type 1) copper domain protein; multicopper oxidase type 2; cytochrome c class I YP_003147203.1 KEGG: rfr:Rfer_3893 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; extracellular solute-binding protein family 3; SMART: EAL domain protein; GGDEF domain containing protein; extracellular solute-binding protein family 3 YP_003147204.1 KEGG: tgr:Tgr7_1405 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_003147205.1 TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: dde:Dde_1854 K+-dependent Na+/Ca+ exchanger related-protein YP_003147206.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: tbd:Tbd_1356 RND efflux system outer membrane lipoprotein NodT YP_003147207.1 KEGG: tbd:Tbd_1357 hypothetical protein YP_003147208.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tbd:Tbd_1359 ABC transporter ATPase YP_003147209.1 PFAM: protein of unknown function DUF214; KEGG: ppd:Ppro_0146 hypothetical protein YP_003147210.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: tbd:Tbd_1361 RND efflux membrane protein YP_003147211.1 PFAM: regulatory protein TetR; KEGG: maq:Maqu_1250 TetR family transcriptional regulator YP_003147212.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: maq:Maqu_3071 BadM/Rrf2 family transcriptional regulator YP_003147213.1 PFAM: protein of unknown function DUF454; KEGG: maq:Maqu_3072 hypothetical protein YP_003147214.1 PFAM: NnrS family protein; KEGG: maq:Maqu_3136 NnrS family protein YP_003147215.1 PFAM: protein of unknown function DUF542 ScdA domain protein; Hemerythrin HHE cation binding domain protein; KEGG: rso:RS02289 cell morphogenesis/cell wall metabolism regulator YP_003147216.1 KEGG: ilo:IL0186 nitric oxide reductase large subunit YP_003147217.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: ppu:PP_2193 TonB-dependent siderophore receptor YP_003147218.1 KEGG: spe:Spro_0919 L-lysine 6-monooxygenase (NADPH) YP_003147219.1 PFAM: IucA/IucC family protein; KEGG: swd:Swoo_2658 IucA/IucC family protein YP_003147220.1 KEGG: noc:Noc_1813 aerobactin siderophore biosynthesis protein IucB YP_003147221.1 PFAM: IucA/IucC family protein; KEGG: bba:Bd1576 aerobactin siderophore biosynthesis protein IucA YP_003147222.1 PFAM: major facilitator superfamily MFS_1; KEGG: esa:ESA_pESA3p05546 hypothetical protein YP_003147224.1 PFAM: PepSY-associated TM helix domain protein; KEGG: swd:Swoo_1507 PepSY-associated TM helix domain-containing protein YP_003147225.1 KEGG: spl:Spea_0270 S-formylglutathione hydrolase; TIGRFAM: S-formylglutathione hydrolase; PFAM: putative esterase YP_003147226.1 TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: spl:Spea_0269 S-(hydroxymethyl)glutathione dehydrogenase YP_003147228.1 KEGG: ilo:IL1526 asparagine synthase (glutamine- hydrolyzing); TIGRFAM: asparagine synthase (glutamine- hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II YP_003147229.1 PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; KEGG: ilo:IL1527 aspartate carbamoyltransferase, catalytic chain YP_003147231.1 PFAM: Na+/solute symporter; KEGG: ilo:IL1528 Na+/proline symporter YP_003147232.1 KEGG: ilo:IL1529 hypothetical protein YP_003147233.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide YP_003147234.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: sfr:Sfri_1294 RNA polymerase, sigma-24 subunit, ECF subfamily YP_003147235.1 KEGG: sfr:Sfri_1295 hypothetical protein YP_003147236.1 KEGG: amc:MADE_01569 hypothetical protein YP_003147237.1 KEGG: amc:MADE_01568 putative unknown lipoprotein YP_003147238.1 KEGG: sfr:Sfri_1298 tetratricopeptide TPR_2 repeat protein YP_003147239.1 KEGG: pha:PSHAb0327 hypothetical protein YP_003147240.1 PFAM: heat shock protein Hsp20; KEGG: cja:CJA_1093 16 kDa heat shock protein A YP_003147241.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S15; KEGG: ilo:IL1172 secreted dipeptidyl aminopeptidase YP_003147242.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: mmw:Mmwyl1_4459 UBA/ThiF-type NAD/FAD binding protein YP_003147243.1 KEGG: sde:Sde_2088 hypothetical protein YP_003147244.1 PFAM: major facilitator superfamily MFS_1; KEGG: pat:Patl_3834 major facilitator transporter YP_003147245.1 KEGG: aha:AHA_3614 methionine-R-sulfoxide reductase; TIGRFAM: methionine-R-sulfoxide reductase; 2- dehydropantoate 2-reductase; PFAM: Methionine sulfoxide reductase B; Ketopantoate reductase ApbA/PanE domain protein YP_003147246.1 KEGG: swp:swp_0439 thioredoxin family protein, putative YP_003147247.1 PFAM: Sporulation domain protein YP_003147248.1 PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: sse:Ssed_3872 Sel1 domain-containing protein YP_003147249.1 PFAM: nitroreductase; KEGG: bur:Bcep18194_B1060 hypothetical protein YP_003147250.1 KEGG: xop:PXO_03837 hypothetical protein YP_003147251.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9B dipeptidylpeptidase IV domain protein; KEGG: spl:Spea_3518 peptidase S9 prolyl oligopeptidase YP_003147252.1 PFAM: peptidase M28; KEGG: amc:MADE_02720 putative glutamate carboxypeptidase II YP_003147253.1 KEGG: aeh:Mlg_0164 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; glycoside hydrolase family 2 sugar binding; SMART: GGDEF domain containing protein YP_003147254.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: abo:ABO_1265 oxidoreductase YP_003147255.1 PFAM: Glu/Leu/Phe/Val dehydrogenase; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: lpp:lpp2344 hypothetical protein YP_003147256.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: asa:ASA_3188 DNA-binding transcriptional activator GcvA YP_003147257.1 KEGG: vha:VIBHAR_07112 hypothetical protein YP_003147258.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: mmr:Mmar10_2366 AraC family transcriptional regulator YP_003147259.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: mmr:Mmar10_2365 amidohydrolase YP_003147260.1 PFAM: protein of unknown function DUF819; KEGG: shn:Shewana3_0774 hypothetical protein YP_003147261.1 PFAM: protein of unknown function DUF962; KEGG: abo:ABO_1907 hypothetical protein YP_003147262.1 TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; KEGG: ppw:PputW619_0793 large conductance mechanosensitive channel protein YP_003147263.1 KEGG: pin:Ping_3031 pyridoxal-5'-phosphate- dependent enzyme, beta subunit YP_003147264.1 KEGG: saz:Sama_2872 hypothetical protein YP_003147265.1 TIGRFAM: phosphate binding protein; KEGG: cps:CPS_1210 putative phosphate ABC transporter, periplasmic phosphate-binding protein YP_003147266.1 PFAM: cytochrome d1 heme region; cytochrome c class I; KEGG: maq:Maqu_3125 hydroxylamine reductase YP_003147267.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sml:Smlt0795 putative exported heme receptor protein YP_003147268.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP YP_003147269.1 PFAM: Beta-ketoacyl synthase; KEGG: cja:CJA_0749 beta-ketoacyl-ACP synthase I YP_003147271.1 KEGG: psb:Psyr_5033 PAS:ATP-binding region, ATPase- like:histidine kinase A, N-terminal; TIGRFAM: phosphate regulon sensor kinase PhoR; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein YP_003147272.1 KEGG: sdn:Sden_2689 phosphate regulon transcriptional regulatory protein PhoB; TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver YP_003147273.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: ppr:PBPRA0731 transcriptional regulator PhoU YP_003147274.1 KEGG: pau:PA14_70810 phosphate ABC transporter, ATP-binding protein; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_003147275.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_00752 phosphate ABC transporter, permease protein PtsA YP_003147276.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mmw:Mmwyl1_4416 binding-protein-dependent transport systems inner membrane component YP_003147277.1 PFAM: phosphate-selective porin O and P; KEGG: pla:Plav_2076 phosphate-selective porin O and P YP_003147279.1 KEGG: bja:blr6472 hypothetical protein YP_003147280.1 KEGG: sse:Ssed_2789 hypothetical protein YP_003147281.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: jan:Jann_1555 AraC family transcriptional regulator YP_003147282.1 KEGG: afw:Anae109_2307 putative esterase YP_003147283.1 PFAM: ThiJ/PfpI domain protein; KEGG: sse:Ssed_2722 putative intracellular protease/amidase-like protein YP_003147284.1 PFAM: peptidase S41; SMART: peptidase S41; KEGG: sdn:Sden_2171 peptidase S41 YP_003147285.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sde:Sde_3440 response regulator receiver domain-containing protein YP_003147286.1 PFAM: histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: histidine kinase A domain protein; KEGG: cps:CPS_2523 sensor histidine kinase YP_003147287.1 PFAM: MscS Mechanosensitive ion channel; KEGG: amc:MADE_00593 MscS mechanosensitive ion channel YP_003147288.1 KEGG: scl:sce3153 hypothetical protein YP_003147289.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: kpn:KPN_04446 single-strand DNA-binding protein YP_003147290.1 PFAM: major facilitator superfamily MFS_1; General substrate transporter; KEGG: maq:Maqu_0747 major facilitator superfamily transporter YP_003147291.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: amc:MADE_00223 excinuclease ABC subunit A YP_003147292.1 PFAM: Integral membrane protein TerC; KEGG: msl:Msil_2582 integral membrane protein TerC YP_003147293.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; PBS lyase HEAT domain protein repeat- containing protein; SMART: PBS lyase HEAT domain protein repeat- containing protein; KEGG: mxa:MXAN_4676 peptidylprolyl cis-trans isomerase, cyclophilin-type YP_003147294.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_003147295.1 PFAM: type IV pilus assembly PilZ; KEGG: gme:Gmet_2523 hypothetical protein YP_003147296.1 PFAM: putative methyltransferase; KEGG: pcr:Pcryo_1403 putative methyltransferase YP_003147297.1 KEGG: pha:PSHAa1314 hypothetical protein YP_003147298.1 KEGG: pmy:Pmen_0756 DNA repair protein RadA; TIGRFAM: DNA repair protein RadA; SMART: AAA ATPase YP_003147299.1 PFAM: DAHP synthetase class II; KEGG: xca:xccb100_3432 3-deoxy-7-phosphoheptulonate synthase YP_003147301.1 KEGG: amc:MADE_00506 hypothetical protein YP_003147302.1 KEGG: vsa:VSAL_I2725 DNA adenine methylase; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase YP_003147303.1 KEGG: vsp:VS_2398 hypothetical protein YP_003147304.1 PFAM: diacylglycerol kinase; KEGG: aha:AHA_2732 diacylglycerol kinase YP_003147305.1 KEGG: pha:PSHAa0047 hypothetical protein YP_003147306.1 TIGRFAM: dethiobiotin synthase; KEGG: hch:HCH_05366 dethiobiotin synthase YP_003147307.1 KEGG: hypothetical protein YP_003147308.1 TIGRFAM: biotin biosynthesis protein BioC; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: hha:Hhal_0960 biotin biosynthesis protein BioC YP_003147309.1 TIGRFAM: bioH protein; PFAM: alpha/beta hydrolase fold; KEGG: asa:ASA_4098 carboxylesterase BioH YP_003147310.1 KEGG: cja:CJA_0427 8-amino-7-oxononanoate synthase; TIGRFAM: 8-amino-7-oxononanoate synthase; PFAM: aminotransferase class I and II; aminotransferase class-III YP_003147311.1 KEGG: maq:Maqu_2756 biotin synthase; TIGRFAM: biotin synthase; PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003147312.1 KEGG: mca:MCA1124 competence protein F YP_003147313.1 PFAM: cytochrome B561; KEGG: cps:CPS_3444 cytochrome b561 family protein YP_003147314.1 PFAM: BLUF domain protein; KEGG: mmw:Mmwyl1_2753 BLUF domain-containing protein YP_003147315.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: csa:Csal_1890 MATE efflux family protein YP_003147316.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pmy:Pmen_3827 GCN5-related N- acetyltransferase YP_003147317.1 KEGG: similar to LOC571499 protein YP_003147318.1 KEGG: pat:Patl_1102 hypothetical protein YP_003147319.1 KEGG: pha:PSHAa2859 hypothetical protein YP_003147320.1 TIGRFAM: IscR-regulated protein YhgI; PFAM: HesB/YadR/YfhF-family protein; nitrogen- fixing NifU domain protein; KEGG: plu:plu0198 putative DNA uptake protein YP_003147321.1 KEGG: lpp:lpp1774 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; TIGRFAM: aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase YP_003147322.1 KEGG: sml:Smlt3934 hypothetical protein YP_003147323.1 PFAM: glutamate-ammonia ligase adenylyltransferase; GlnD PII-uridylyltransferase; KEGG: yen:YE3674 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase YP_003147324.1 PFAM: LemA family protein; KEGG: abo:ABO_1908 hypothetical protein YP_003147325.1 PFAM: peptidase M48 Ste24p; KEGG: abo:ABO_1909 protease, putative YP_003147328.1 PFAM: adenylate cyclase; KEGG: vco:VC0395_A2018 hypothetical protein YP_003147329.1 PFAM: protein of unknown function DUF47; KEGG: aha:AHA_3771 hypothetical protein YP_003147330.1 PFAM: phosphate transporter; KEGG: ilo:IL2207 phosphate permease YP_003147331.1 PFAM: SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: csa:Csal_2333 SH3-like region YP_003147332.1 TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Aldehyde Dehydrogenase; Proline dehydrogenase; KEGG: spc:Sputcn32_3099 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase YP_003147333.1 in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA YP_003147334.1 PFAM: peptidase M16 domain protein; KEGG: ccv:CCV52592_2215 M16 family peptidase YP_003147335.1 KEGG: maq:Maqu_1586 hypothetical protein YP_003147336.1 SMART: AAA ATPase; KEGG: sse:Ssed_1085 peptidoglycan binding domain- containing protein YP_003147337.1 KEGG: cps:CPS_1246 putative lipoprotein YP_003147338.1 PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: tgr:Tgr7_0331 tRNA nucleotidyltransferase YP_003147339.1 PFAM: Bacitracin resistance protein BacA; KEGG: vvy:VV0570 undecaprenyl pyrophosphate phosphatase YP_003147341.1 PFAM: protein of unknown function DUF185; KEGG: eba:ebA3370 hypothetical protein YP_003147342.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ccs:CCNA_00422 3-oxoacyl-(acyl-carrier protein) reductase YP_003147343.1 TIGRFAM:2-amino-4-hydroxy-6- hydroxymethyldihydropter idinepyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin- pyrophosphokinase HPPK; KEGG: spl:Spea_0966 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_003147344.1 TIGRFAM: dihydroneopterin aldolase; PFAM: dihydroneopterin aldolase; KEGG: abo:ABO_2057 dihydroneopterin aldolase YP_003147345.1 PFAM: protein of unknown function DUF205; KEGG: vsp:VS_0403 hypothetical protein YP_003147347.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: slo:Shew_1777 Bcr/CflA subfamily drug resistance transporter YP_003147348.1 PFAM: peptidase S41; KEGG: mmr:Mmar10_0730 peptidase S41 YP_003147350.1 KEGG: vfm:VFMJ11_2360 O-sialoglycoprotein endopeptidase; TIGRFAM: metalloendopeptidase, glycoprotease family; PFAM: peptidase M22 glycoprotease YP_003147351.1 TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; KEGG: swd:Swoo_1156 ribosomal protein S21 YP_003147352.1 KEGG: tgr:Tgr7_3018 hypothetical protein YP_003147353.1 KEGG: asa:ASA_3462 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger CHC2-family protein; DNA primase catalytic core domain; TOPRIM domain protein; DNA primase DnaG DnaB-binding; SMART: zinc finger CHC2-family protein; DNA primase DnaG DnaB-binding; Toprim sub domain protein YP_003147354.1 TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 non-essential domain protein; sigma- 70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 1.1 domain protein; sigma-70 region 4 domain protein; KEGG: pat:Patl_1038 RNA polymerase, sigma 70 subunit, RpoD YP_003147355.1 KEGG: mrd:Mrad2831_1387 hypothetical protein YP_003147356.1 KEGG: shl:Shal_2178 hypothetical protein YP_003147357.1 PFAM: ChaB family protein; KEGG: maq:Maqu_1848 ChaB family protein YP_003147359.1 KEGG: bba:Bd2842 hypothetical protein YP_003147360.1 PFAM: polysaccharide deacetylase; KEGG: aba:Acid345_1565 polysaccharide deacetylase YP_003147361.1 PFAM: amidohydrolase; KEGG: sus:Acid_7338 amidohydrolase YP_003147362.1 KEGG: cja:CJA_3085 putative sensory box protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; extracellular solute-binding protein family 3; SMART: EAL domain protein; extracellular solute- binding protein family 3; GGDEF domain containing protein YP_003147366.1 KEGG: bja:blr5741 hypothetical protein YP_003147367.1 KEGG: hypothetical protein YP_003147368.1 PFAM: peptidase S41; KEGG: amc:MADE_03133 hypothetical protein YP_003147369.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: azo:azo3816 AraC family transcriptional regulator YP_003147370.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; putative methyltransferase; KEGG: mes:Meso_1502 methyltransferase type 11 YP_003147371.1 KEGG: psa:PST_4068 translation elongation factor P (EF-P) YP_003147374.1 KEGG: ppw:PputW619_2132 Crp/FNR family transcriptional regulator YP_003147375.1 PFAM: acriflavin resistance protein; KEGG: cps:CPS_4648 AcrB/AcrD/AcrF family protein YP_003147376.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pha:PSHAa0559 secretion protein YP_003147377.1 PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: xom:XOO_3194 aminopeptidase N YP_003147378.1 PFAM: major facilitator superfamily MFS_1; KEGG: dps:DP0880 hypothetical protein YP_003147379.1 PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: xom:XOO_3194 aminopeptidase N YP_003147380.1 KEGG: sbl:Sbal_0891 hypothetical protein YP_003147381.1 KEGG: nha:Nham_4068 major facilitator superfamily permease YP_003147382.1 TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain protein; KEGG: mmw:Mmwyl1_1881 aconitate hydratase 1 YP_003147383.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_003147384.1 PFAM: Excinuclease ABC C subunit domain protein; SMART: Excinuclease ABC C subunit domain protein; KEGG: cps:CPS_3101 endo/excinuclease amino terminal domain-containing protein YP_003147385.1 PFAM: dUTPase; KEGG: pha:PSHAa0125 hypothetical protein YP_003147386.1 functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system YP_003147387.1 PFAM: Nucleotidyl transferase; KEGG: abo:ABO_2043 nucleotidyltransferase family protein YP_003147388.1 PFAM: aminoglycoside phosphotransferase; protein of unknown function DUF227; KEGG: mca:MCA0600 hypothetical protein YP_003147389.1 PFAM: Organic solvent tolerance protein; OstA family protein; KEGG: pat:Patl_3418 organic solvent tolerance protein YP_003147390.1 PFAM: SurA domain; PpiC-type peptidyl-prolyl cis- trans isomerase; KEGG: noc:Noc_1723 PpiC-type peptidyl-prolyl cis- trans isomerase YP_003147391.1 KEGG: spe:Spro_0725 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA YP_003147392.1 KEGG: csa:Csal_0920 dimethyladenosine transferase; TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; SMART: ribosomal RNA adenine methylase transferase YP_003147393.1 PFAM: type IV pilus assembly PilZ; KEGG: hch:HCH_04966 hypothetical protein YP_003147394.1 KEGG: sfl:SF3681 orotate phosphoribosyltransferase; TIGRFAM: orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_003147395.1 KEGG: mca:MCA2739 hypothetical protein YP_003147396.1 FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly YP_003147397.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase; KEGG: pmy:Pmen_4379 phosphomannomutase YP_003147398.1 TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: DNA/pantothenate metabolism flavoprotein domain protein; flavoprotein; KEGG: vsa:VSAL_I0193 coenzyme A biosynthesis bifunctional protein CoaBC YP_003147399.1 TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; KEGG: aeh:Mlg_2664 DNA repair protein RadC YP_003147400.1 required for 70S ribosome assembly YP_003147401.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_003147402.1 KEGG: abo:ABO_2583 formamidopyrimidine-DNA glycosylase; TIGRFAM: formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein; DNA glycosylase/AP lyase, H2TH DNA- binding YP_003147403.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: saz:Sama_1257 biopolymer transport protein ExbD/TolR YP_003147404.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ilo:IL1856 biopolymer transport protein YP_003147405.1 KEGG: cja:CJA_0299 hypothetical protein YP_003147406.1 PFAM: protein of unknown function UPF0153; KEGG: ecg:E2348C_0244 predicted ferredoxin YP_003147407.1 PFAM: Patatin; KEGG: abo:ABO_1415 hypothetical protein YP_003147408.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ppw:PputW619_0341 4Fe-4S ferredoxin iron- sulfur binding domain-containing protein YP_003147409.1 KEGG: psb:Psyr_4758 phosphopantetheine adenylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase YP_003147410.1 PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: slo:Shew_0591 glucose-methanol-choline oxidoreductase YP_003147411.1 KEGG: pfl:PFL_5866 hypothetical protein YP_003147412.1 PFAM: Aldehyde Dehydrogenase; KEGG: pau:PA14_04810 putative aldehyde dehydrogenase YP_003147413.1 PFAM: alpha/beta hydrolase fold; KEGG: swd:Swoo_0670 alpha/beta hydrolase fold YP_003147414.1 KEGG: aha:AHA_0778 uroporphyrinogen decarboxylase; TIGRFAM: uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D) YP_003147415.1 PFAM: Sporulation domain protein; KEGG: plu:plu0088 hypothetical protein YP_003147416.1 KEGG: noc:Noc_0253 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase YP_003147417.1 PFAM: shikimate kinase; KEGG: vpa:VP2745 shikimate kinase I YP_003147418.1 TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; Secretin/TonB short domain; NolW domain protein; KEGG: tgr:Tgr7_3028 type IV pilus secretin PilQ YP_003147419.1 PFAM: Pilus assembly protein PilP; KEGG: pfo:Pfl01_0408 pilus assembly protein, PilQ YP_003147420.1 PFAM: Pilus assembly protein PilO; KEGG: psa:PST_0555 type 4 fimbrial biogenesis protein PilO YP_003147421.1 PFAM: Fimbrial assembly family protein; KEGG: pau:PA14_66650 type 4 fimbrial biogenesis protein PilN YP_003147422.1 TIGRFAM: type IV pilus assembly protein PilM; KEGG: maq:Maqu_0826 type IV pilus assembly protein PilM YP_003147423.1 KEGG: swd:Swoo_0334 1A family penicillin-binding protein; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase YP_003147424.1 TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; KEGG: maq:Maqu_0823 ribosomal protein L31 YP_003147425.1 KEGG: prw:PsycPRwf_0516 hypothetical protein YP_003147426.1 KEGG: prw:PsycPRwf_0517 hypothetical protein YP_003147428.1 KEGG: prw:PsycPRwf_0518 hypothetical protein YP_003147429.1 KEGG: mmr:Mmar10_1548 hypothetical protein YP_003147430.1 KEGG: vpa:VP0253 primosome assembly protein PriA; TIGRFAM: primosomal protein N'; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicase; helicase domain protein YP_003147431.1 PFAM: Sporulation domain protein; KEGG: vsp:VS_2900 putative cell division protein FtsN YP_003147432.1 heat shock protein involved in degradation of misfolded proteins YP_003147433.1 KEGG: pmy:Pmen_0532 ATP-dependent protease ATP-binding subunit; TIGRFAM: heat shock protein HslVU, ATPase subunit HslU; PFAM: ATPase AAA-2 domain protein; SMART: AAA ATPase YP_003147434.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; peptidase domain protein; proteinase inhibitor I9 subtilisin propeptide; KEGG: swd:Swoo_2373 peptidase S8 and S53 subtilisin kexin sedolisin YP_003147435.1 PFAM: protein of unknown function DUF971; KEGG: dar:Daro_4118 hypothetical protein YP_003147436.1 TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: yen:YE0256 ubiquinone/menaquinone biosynthesis methyltransferase YP_003147437.1 PFAM: Sterol-binding domain protein; KEGG: cbd:CBUD_2119 hypothetical protein YP_003147438.1 TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: saz:Sama_3204 ubiquinone biosynthesis protein AarF YP_003147439.1 PFAM: histidine triad (HIT) protein; KEGG: cti:RALTA_A2865 conserved hypothetical protein; putative nucleotide-binding protein, histidine Triad (HIT) motif YP_003147440.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: vsp:VS_0101 sec-independent protein translocase protein TatA homolog YP_003147441.1 TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: cja:CJA_0742 TatB YP_003147442.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: maq:Maqu_3422 sec-independent protein translocase, TatC subunit YP_003147443.1 KEGG: aba:Acid345_1855 hypothetical protein YP_003147444.1 KEGG: amc:MADE_02647 Xaa-Pro aminopeptidase family enzyme YP_003147445.1 KEGG: tgr:Tgr7_2281 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: GGDEF domain containing protein; PAC repeat- containing protein; PAS domain containing protein YP_003147446.1 PFAM: regulatory protein TetR; KEGG: slo:Shew_3104 TetR family transcriptional regulator YP_003147447.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: abo:ABO_0965 multidrug/solvent RND membrane fusion protein, putative YP_003147448.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux- 1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: cti:RALTA_A3188 component of acridine efflux pump, multidrug efflux system YP_003147449.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: psp:PSPPH_4015 NodT family outer membrane efflux lipoprotein YP_003147450.1 PFAM: protein of unknown function UPF0118; KEGG: pca:Pcar_3090 putative transport protein YP_003147451.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: set:SEN3771 putative deoxyribonuclease YP_003147452.1 PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; SMART: phospholipid/glycerol acyltransferase; KEGG: azo:azo0148 putative acyltransferase family protein YP_003147454.1 TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: psa:PST_0330 D-tyrosyl-tRNA deacylase YP_003147456.1 TIGRFAM: GTP-binding protein TypA; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; KEGG: pat:Patl_1024 GTP-binding protein TypA YP_003147457.1 KEGG: slo:Shew_1467 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_003147458.1 KEGG: slo:Shew_1467 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_003147459.1 PFAM: tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase; KEGG: abo:ABO_2264 tRNA (5-methylaminomethyl-2- thiouridylate)-methyltransferase YP_003147460.1 PFAM: SirA family protein; KEGG: abo:ABO_2263 hypothetical protein YP_003147461.1 KEGG: mmw:Mmwyl1_2919 hypothetical protein YP_003147462.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pha:PSHAa1988 S-adenosyl-L-methionine- dependent methyltransferase YP_003147463.1 PFAM: sulfotransferase; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bra:BRADO3973 TPR repeat-containing protein YP_003147464.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pha:PSHAa1989 hypothetical protein YP_003147465.1 TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: amc:MADE_01591 glutamine synthetase YP_003147466.1 KEGG: tgr:Tgr7_3260 hypothetical protein YP_003147467.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: maq:Maqu_0767 signal transduction histidine kinase, nitrogen specific, NtrB YP_003147468.1 PFAM: response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; KEGG: spe:Spro_4883 nitrogen regulation protein NR(I) YP_003147469.1 TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: maq:Maqu_3163 RNA methyltransferase YP_003147470.1 PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; KEGG: pha:PSHAa0370 glycerol-3-phosphate dehydrogenase (NAD+) YP_003147471.1 TIGRFAM: protein-export protein SecB; PFAM: protein export chaperone SecB; KEGG: aeh:Mlg_2571 preprotein translocase subunit SecB YP_003147472.1 TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; glutaredoxin 2; KEGG: msl:Msil_3690 glutaredoxin 3 YP_003147473.1 PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: sdn:Sden_3697 rhodanese-like protein YP_003147474.1 PFAM: protein of unknown function DUF107; KEGG: bra:BRADO6247 hypothetical protein YP_003147475.1 PFAM: band 7 protein; SMART: band 7 protein; KEGG: rce:RC1_1770 hypothetical protein YP_003147476.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate YP_003147477.1 PFAM: Peptidase M23; KEGG: swd:Swoo_4878 peptidase M23B YP_003147478.1 KEGG: psa:PST_4082 probable carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; SMART: peptidase S41; PDZ/DHR/GLGF domain protein YP_003147479.1 KEGG: cja:CJA_1653 putative lipoprotein YP_003147481.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose YP_003147482.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cja:CJA_0310 HAD-superfamily hydrolase, subfamily IA, variant 3 YP_003147483.1 PFAM: type II secretion system protein N; KEGG: shl:Shal_4164 type II secretion system protein N YP_003147484.1 PFAM: General secretion pathway M protein; KEGG: sde:Sde_3571 hypothetical protein YP_003147485.1 TIGRFAM: general secretion pathway protein L; PFAM: General secretion pathway L; KEGG: pat:Patl_0239 general secretion pathway protein L YP_003147486.1 PFAM: General secretion pathway protein K; KEGG: swd:Swoo_4727 general secretion pathway protein K YP_003147487.1 TIGRFAM: general secretion pathway protein J; KEGG: maq:Maqu_1354 general secretion pathway protein J YP_003147488.1 TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; KEGG: pae:PA3099 general secretion pathway protein I YP_003147489.1 TIGRFAM: general secretion pathway protein H; KEGG: cps:CPS_4587 general secretion pathway protein H YP_003147490.1 TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: glo:Glov_1278 general secretion pathway protein G YP_003147491.1 TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: slo:Shew_3617 general secretion pathway protein F YP_003147492.1 KEGG: aeh:Mlg_2399 general secretory pathway protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase YP_003147493.1 TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: amc:MADE_03956 general secretion pathway protein D YP_003147494.1 KEGG: slo:Shew_3620 general secretion pathway protein C YP_003147495.1 PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: aci:ACIAD1386 heat shock protein 15 YP_003147496.1 PFAM: Hsp33 protein; KEGG: abo:ABO_0276 chaperonin, 33 kDa YP_003147497.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: cps:CPS_4596 osmolarity sensor protein YP_003147498.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: pat:Patl_0225 osmolarity response regulator YP_003147499.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; RNA binding S1 domain protein; Helix-hairpin-helix DNA-binding class 1; KEGG: asa:ASA_4094 hypothetical protein YP_003147500.1 PFAM: Disulphide bond formation protein DsbB; KEGG: noc:Noc_2599 disulphide bond formation protein DsbB YP_003147501.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: sde:Sde_1154 hypothetical protein YP_003147502.1 KEGG: eli:ELI_09690 hypothetical protein YP_003147503.1 PFAM: peptidylprolyl isomerase FKBP-type; FKBP-type peptidyl-prolyl isomerase domain protein; KEGG: vsp:VS_2842 FkpA protein YP_003147504.1 KEGG: shl:Shal_3596 hypothetical protein YP_003147505.1 PFAM: protein of unknown function DUF423; KEGG: bav:BAV1887 membrane protein YP_003147506.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: pap:PSPA7_1883 lipid A biosynthesis lauroyl acyltransferase YP_003147507.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: vch:VC0090 DNA-damage-inducible protein F YP_003147508.1 PFAM: electron transport protein SCO1/SenC; KEGG: ilo:IL0252 hypothetical protein YP_003147509.1 TIGRFAM: protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; KEGG: amc:MADE_04005 protoheme IX farnesyltransferase YP_003147510.1 PFAM: cytochrome oxidase assembly; KEGG: vha:VIBHAR_06265 hypothetical protein YP_003147511.1 KEGG: vsp:VS_II0370 hypothetical protein YP_003147512.1 KEGG: aeh:Mlg_0298 hypothetical protein YP_003147513.1 KEGG: tgr:Tgr7_3006 hypothetical protein YP_003147514.1 KEGG: cps:CPS_4814 hypothetical protein YP_003147515.1 PFAM: lipopolysaccharide kinase; protein of unknown function RIO1; KEGG: pin:Ping_0330 3-deoxy-D-manno-octulosonic- acid kinase YP_003147516.1 PFAM: glycosyl transferase family 9; KEGG: pha:PSHAa2318 ADP-heptose:LPS heptosyltransferase YP_003147517.1 PFAM: transcriptional regulator domain protein; KEGG: aba:Acid345_4155 transcriptional regulatory protein-like YP_003147519.1 KEGG: shn:Shewana3_3877 hypothetical protein YP_003147520.1 KEGG: hch:HCH_03891 hypothetical protein YP_003147523.1 PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pha:PSHAa1094 amino acid decarboxylase YP_003147524.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: cps:CPS_2140 putative lipoprotein YP_003147525.1 KEGG: bur:Bcep18194_C6910 hypothetical protein YP_003147526.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bcb:BCB4264_A0656 hypothetical protein YP_003147529.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: shl:Shal_3150 preprotein translocase subunit SecG YP_003147530.1 KEGG: tgr:Tgr7_0984 triose-phosphate isomerase; TIGRFAM: triosephosphate isomerase; PFAM: triosephosphate isomerase YP_003147531.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_003147532.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_003147533.1 TIGRFAM: NADH:ubiquinone oxidoreductase, subunit C; PFAM: FMN-binding domain protein; KEGG: abo:ABO_1034 Na(+)-translocating NADH-quinone reductase subunit C YP_003147534.1 TIGRFAM: NADH:ubiquinone oxidoreductase, subunit D; PFAM: RnfA-Nqr electron transport subunit; KEGG: amc:MADE_00748 NADH-ubiquinone oxidoreductase YP_003147535.1 TIGRFAM: NADH:ubiquinone oxidoreductase, subunit E; PFAM: RnfA-Nqr electron transport subunit; KEGG: hch:HCH_02689 Na(+)-translocating NADH- quinone reductase subunit E YP_003147536.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_003147537.1 PFAM: ApbE family lipoprotein; KEGG: shl:Shal_3181 ApbE family lipoprotein YP_003147539.1 PFAM: protein of unknown function DUF539; KEGG: pat:Patl_0459 hypothetical protein YP_003147540.1 PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: pmy:Pmen_3311 CBS domain-containing protein YP_003147541.1 PFAM: OmpA/MotB domain protein; Thrombospondin type 3 repeat; KEGG: gsu:GSU0360 OmpA domain-containing protein YP_003147542.1 KEGG: asu:Asuc_1422 phosphoglucosamine mutase; TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II YP_003147543.1 KEGG: net:Neut_0999 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS YP_003147544.1 KEGG: tgr:Tgr7_0981 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; peptidase M41 FtsH extracellular; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_003147545.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: sde:Sde_2721 ribosomal RNA methyltransferase RrmJ/FtsJ YP_003147546.1 PFAM: protein of unknown function UPF0044; KEGG: asa:ASA_0999 hypothetical protein YP_003147547.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: abo:ABO_0831 DNA-binding heavy metal response regulator, putative YP_003147548.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: abo:ABO_0829 ColS YP_003147549.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: xac:XAC1372 hypothetical protein YP_003147550.1 PFAM: protein of unknown function DUF1295; KEGG: aci:ACIAD1631 hypothetical protein YP_003147551.1 KEGG: xac:XAC1374 hypothetical protein YP_003147552.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: hch:HCH_00338 cyclopropane fatty acid synthase -like protein YP_003147553.1 PFAM: protein of unknown function DUF1365; KEGG: xca:xccb100_2967 hypothetical protein YP_003147554.1 PFAM: amine oxidase; KEGG: smt:Smal_1956 amine oxidase YP_003147555.1 PFAM: fatty acid desaturase; KEGG: hch:HCH_00335 fatty-acid desaturase YP_003147556.1 KEGG: hch:HCH_00333 hypothetical protein YP_003147557.1 KEGG: abo:ABO_0824 hypothetical protein YP_003147558.1 PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: cja:CJA_1942 deoxyribodipyrimidine photolyase YP_003147559.1 PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; KEGG: pin:Ping_0997 hypothetical protein YP_003147560.1 KEGG: tgr:Tgr7_2678 hypothetical protein YP_003147561.1 TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: asu:Asuc_1457 transcription elongation factor GreA YP_003147562.1 TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; MGS domain protein; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl- phosphate synthetase large chain domain protein; KEGG: hch:HCH_01228 carbamoyl phosphate synthase large subunit YP_003147563.1 TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I; KEGG: abo:ABO_0317 carbamoyl phosphate synthase small subunit YP_003147564.1 KEGG: hch:HCH_01226 dihydrodipicolinate reductase; TIGRFAM: dihydrodipicolinate reductase; PFAM: dihydrodipicolinate reductase YP_003147565.1 PFAM: lipolytic protein G-D-S-L family; KEGG: sse:Ssed_3558 lipolytic enzyme, G-D-S-L YP_003147566.1 TIGRFAM: oligopeptide transporter, OPT family; oligopeptide transporters, OPT superfamily; PFAM: Oligopeptide transporter OPT superfamily protein; KEGG: ade:Adeh_0243 oligopeptide transporter OPT YP_003147567.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: slo:Shew_1245 LysR family transcriptional regulator YP_003147569.1 PFAM: protein of unknown function DUF897; KEGG: slo:Shew_1247 hypothetical protein YP_003147570.1 KEGG: slo:Shew_1248 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase YP_003147571.1 PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; KEGG: slo:Shew_1249 phosphoribosylaminoimidazole carboxylase, ATPase subunit YP_003147572.1 KEGG: son:SO_1127 chaperone protein DnaJ; TIGRFAM: chaperone protein DnaJ; PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; DnaJ central domain protein; SMART: heat shock protein DnaJ domain protein YP_003147573.1 KEGG: maq:Maqu_3362 chaperone protein DnaK; TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70 YP_003147576.1 PFAM: protein of unknown function DUF28; KEGG: sde:Sde_1551 hypothetical protein YP_003147577.1 KEGG: sus:Acid_2602 TPR repeat-containing protein YP_003147579.1 KEGG: rme:Rmet_4309 hypothetical protein YP_003147583.1 PFAM: protein of unknown function DUF886; KEGG: sdn:Sden_1080 hypothetical protein YP_003147584.1 PFAM: GrpE protein; KEGG: tcx:Tcr_0869 GrpE protein YP_003147585.1 TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: Negative regulator of class I heat shock protein; KEGG: tgr:Tgr7_0970 heat-inducible transcription repressor HrcA YP_003147586.1 PFAM: ATP-NAD/AcoX kinase; KEGG: ppr:PBPRA0695 inorganic polyphosphate/ATP-NAD kinase YP_003147587.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: cja:CJA_3351 DNA repair protein RecN YP_003147588.1 KEGG: spl:Spea_3210 hypothetical protein YP_003147589.1 PFAM: protein of unknown function DUF81; KEGG: mfa:Mfla_2237 hypothetical protein YP_003147590.1 TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase; KEGG: abo:ABO_2345 prolipoprotein diacylglyceryl transferase YP_003147591.1 KEGG: hch:HCH_05857 thymidylate synthase; TIGRFAM: thymidylate synthase; PFAM: thymidylate synthase YP_003147592.1 PFAM: dihydrofolate reductase region; KEGG: aha:AHA_3377 dihydrofolate reductase YP_003147593.1 TIGRFAM: sortase family protein; PFAM: peptidase C60 sortase A and B; KEGG: pla:Plav_2294 sortase family protein YP_003147594.1 PFAM: Vault protein inter-alpha-trypsin domain protein; von Willebrand factor type A; SMART: von Willebrand factor type A; Vault protein inter-alpha-trypsin, metazoa; KEGG: shn:Shewana3_2410 vault protein inter-alpha- trypsin subunit YP_003147595.1 PFAM: protein of unknown function DUF307; KEGG: rpa:RPA0774 hypothetical protein YP_003147596.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sse:Ssed_2744 GCN5-related N- acetyltransferase YP_003147597.1 catalyzes the oxidation of malate to oxaloacetate YP_003147598.1 KEGG: pin:Ping_3492 ATP-dependent DNA helicase RecG; TIGRFAM: ATP-dependent DNA helicase RecG; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; type III restriction protein res subunit; SMART: DEAD-like helicase; helicase domain protein YP_003147599.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: csa:Csal_3244 transcriptional regulator, LysR family YP_003147600.1 PFAM: Tellurite resistance methyltransferase, TehB, core; KEGG: tcx:Tcr_1126 hypothetical protein YP_003147601.1 PFAM: protein of unknown function DUF405; protein of unknown function DUF418; KEGG: sal:Sala_2201 hypothetical protein YP_003147602.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pin:Ping_3496 tRNA guanosine-2'-O- methyltransferase YP_003147603.1 TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: ppu:PP_5303 endoribonuclease YP_003147604.1 KEGG: saz:Sama_0264 bifunctional (p)ppGpp synthetase II/guanosine-3',5'-bis pyrophosphate 3'- pyrophosphohydrolase; TIGRFAM: RelA/SpoT family protein; PFAM: RelA/SpoT domain protein; TGS domain protein; amino acid-binding ACT domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003147605.1 TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; KEGG: swd:Swoo_4582 DNA-directed RNA polymerase, omega subunit YP_003147606.1 KEGG: pap:PSPA7_6112 guanylate kinase; TIGRFAM: guanylate kinase; PFAM: guanylate kinase; SMART: guanylate kinase/L-type calcium channel region YP_003147607.1 PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: pat:Patl_4283 hypothetical protein YP_003147608.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP YP_003147609.1 PFAM: ApaG domain protein; KEGG: tgr:Tgr7_2722 ApaG domain protein YP_003147610.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: gbm:Gbem_2261 short-chain dehydrogenase/reductase SDR YP_003147611.1 PFAM: protein of unknown function DUF1123; KEGG: shm:Shewmr7_3811 protein of unknown function DUF1123 YP_003147612.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: sdn:Sden_2741 peptidylprolyl isomerase, FKBP- type YP_003147613.1 KEGG: amc:MADE_04048 RNase PH (tRNA nucleotidyltransferase); TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2 YP_003147614.1 KEGG: tcx:Tcr_0552 putative lipoprotein YP_003147615.1 KEGG: noc:Noc_1323 hypothetical protein YP_003147616.1 KEGG: sdn:Sden_0007 Na-Ca exchanger/integrin-beta4 YP_003147617.1 KEGG: sdn:Sden_0803 hypothetical protein YP_003147618.1 PFAM: malic protein NAD-binding; malic protein domain protein; KEGG: bha:BH3168 malic enzyme (malate dehydrogenase) YP_003147619.1 PFAM: DoxX family protein; KEGG: pmy:Pmen_1556 DoxX family protein YP_003147620.1 PFAM: ferredoxin-dependent glutamate synthase; KEGG: hch:HCH_00332 glutamate synthase domain- containing 2 YP_003147621.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: abo:ABO_2179 rna polymerase sigma-E factor (sigma-24) YP_003147622.1 KEGG: afw:Anae109_1555 putative transmembrane anti- sigma factor YP_003147623.1 PFAM: SmpA/OmlA domain protein; KEGG: ilo:IL0990 outer membrane lipoprotein OmlA (small protein A) YP_003147624.1 PFAM: ferric-uptake regulator; KEGG: sde:Sde_2736 helix-turn-helix, AraC type YP_003147625.1 PFAM: protein of unknown function DUF938; Methyltransferase type 11; KEGG: har:HEAR2510 hypothetical protein YP_003147626.1 PFAM: NUDIX hydrolase; KEGG: slo:Shew_1038 dinucleoside polyphosphate hydrolase YP_003147627.1 MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair YP_003147628.1 KEGG: cps:CPS_0546 GGDEF domain-containing protein YP_003147629.1 SMART: Tetratricopeptide domain protein; KEGG: slo:Shew_1274 diguanylate cyclase YP_003147630.1 KEGG: saz:Sama_2383 hypothetical protein YP_003147631.1 KEGG: shl:Shal_1349 uroporphyrin-III C/tetrapyrrole methyltransferase YP_003147632.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine YP_003147633.1 TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; KEGG: pha:PSHAa2474 glycine cleavage system protein H YP_003147634.1 TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: amc:MADE_00861 aminomethyltransferase YP_003147635.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dar:Daro_3439 GCN5-related N- acetyltransferase YP_003147636.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hha:Hhal_1189 binding-protein-dependent transport systems inner membrane component YP_003147637.1 PFAM: extracellular solute-binding protein family 1; KEGG: tbd:Tbd_0990 ABC transporter, iron binding protein YP_003147638.1 KEGG: ppr:PBPRB1101 hypothetical protein YP_003147639.1 KEGG: cps:CPS_3681 hypothetical protein YP_003147640.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; KEGG: ppr:PBPRA3117 2-octaprenyl-6-methoxyphenol hydroxylase YP_003147642.1 KEGG: similar to mCG1046517 YP_003147643.1 TIGRFAM: 2-polyprenyl-6-methoxyphenol 4- hydroxylase; Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: ecx:EcHS_A3066 2-octaprenyl-6-methoxyphenyl hydroxylase YP_003147644.1 PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; KEGG: sde:Sde_3513 aminopeptidase P YP_003147645.1 PFAM: protein of unknown function UPF0149; KEGG: pap:PSPA7_5968 hypothetical protein YP_003147646.1 KEGG: hha:Hhal_1183 hypothetical protein YP_003147647.1 PFAM: protein of unknown function DUF710; KEGG: tgr:Tgr7_2768 protein of unknown function DUF710 YP_003147648.1 TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: tgr:Tgr7_2769 5-formyltetrahydrofolate cyclo- ligase YP_003147649.1 PFAM: protein of unknown function DUF55; KEGG: tgr:Tgr7_2770 protein of unknown function DUF55 YP_003147650.1 KEGG: ilo:IL2103 ribose-5-phosphate isomerase A; TIGRFAM: ribose 5-phosphate isomerase; PFAM: Ribose 5-phosphate isomerase YP_003147653.1 KEGG: tbd:Tbd_0197 two component Fis family transcriptional regulator; TIGRFAM: PEP-CTERM system response regulator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase YP_003147654.1 KEGG: aeh:Mlg_0158 periplasmic sensor signal transduction histidine kinase; TIGRFAM: PEP-CTERM system histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_003147655.1 KEGG: aeh:Mlg_0133 hypothetical protein YP_003147656.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; amino acid-binding ACT domain protein; KEGG: pha:PSHAa0666 D-3-phosphoglycerate dehydrogenase YP_003147657.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis YP_003147658.1 PFAM: phosphoglycerate kinase; KEGG: ilo:IL2212 phosphoglycerate kinase YP_003147659.1 KEGG: bac:BamMC406_0563 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_003147660.1 KEGG: maq:Maqu_3040 transketolase; TIGRFAM: transketolase; PFAM: Transketolase central region; Transketolase domain protein YP_003147661.1 KEGG: pat:Patl_1665 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; Two component regulator propeller; GGDEF domain containing protein; Two component regulator three Y domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein YP_003147662.1 PFAM: ThiJ/PfpI domain protein; KEGG: shn:Shewana3_4108 isoprenoid biosynthesis protein YP_003147663.1 PFAM: protein of unknown function DUF255; KEGG: mca:MCA2477 hypothetical protein YP_003147664.1 PFAM: protein of unknown function DUF599; KEGG: pap:PSPA7_3683 hypothetical protein YP_003147665.1 KEGG: lpn:lpg0123 thiol:disulfide interchange protein DsbA YP_003147666.1 PFAM: cytochrome c class I; KEGG: vha:VIBHAR_00575 cytochrome c553 YP_003147667.1 PFAM: GTP-binding protein HSR1-related; KEGG: yen:YE0022 GTPase EngB YP_003147668.1 SMART: Tetratricopeptide domain protein; KEGG: pha:PSHAb0086 TPR repeat-containing protein YP_003147669.1 KEGG: sdn:Sden_0686 hypothetical protein YP_003147670.1 KEGG: pha:PSHAa2757 multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'- >5' exonuclease (C-terminal); TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: 5'-3' exonuclease; DNA-directed DNA polymerase; 3'-5' exonuclease; Helix-hairpin-helix domain protein class 2 YP_003147671.1 TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877; KEGG: vvy:VVA0986 hypothetical protein YP_003147672.1 TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: conserved hypothetical protein; KEGG: sde:Sde_1529 hypothetical protein YP_003147673.1 TIGRFAM: type VI secretion-associated protein, ImpA family; PFAM: ImpA domain protein; KEGG: sde:Sde_1528 hypothetical protein YP_003147674.1 PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: sfr:Sfri_2371 protein serine/threonine phosphatase YP_003147675.1 TIGRFAM: type VI secretion-associated protein, BMA_A0400 family; KEGG: sde:Sde_1521 GTP-binding YP_003147676.1 TIGRFAM: type VI secretion protein IcmF; PFAM: ImcF domain protein; protein of unknown function DUF1215; KEGG: sfr:Sfri_2373 ImcF domain protein YP_003147677.1 TIGRFAM: type IV / VI secretion system protein, DotU family; PFAM: OmpA/MotB domain protein; KEGG: sfr:Sfri_2374 OmpA/MotB domain protein YP_003147678.1 TIGRFAM: type VI secretion protein, VC_A0114 family; PFAM: protein of unknown function DUF876; KEGG: pap:PSPA7_0150 hypothetical protein YP_003147679.1 TIGRFAM: type VI secretion lipoprotein, VC_A0113 family; KEGG: pst:PSPTO_5421 putative lipoprotein YP_003147680.1 TIGRFAM: type VI secretion system FHA domain protein; PFAM: Forkhead-associated protein; KEGG: sfr:Sfri_2377 FHA domain containing protein YP_003147681.1 PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: sbl:Sbal_2336 protein kinase YP_003147682.1 catalyzes the conversion of N-acetyl_L-aspartic acid (NAA) to aspartate and acetate YP_003147683.1 PFAM: nuclease (SNase domain protein); SMART: nuclease (SNase domain protein); KEGG: see:SNSL254_p_0021 nuclease domain-containing protein YP_003147684.1 PFAM: protein of unknown function DUF1212; KEGG: mxa:MXAN_1583 hypothetical protein YP_003147686.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: psa:PST_1245 TonB-dependent receptor protein YP_003147687.1 KEGG: lpc:LPC_1741 transmembrane protein YP_003147688.1 PFAM: Peptidase A1 pepsin; KEGG: cps:CPS_0549 hypothetical protein YP_003147689.1 PFAM: Citrate transporter; TrkA-C domain protein; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: hne:HNE_2682 TrkA domain-containing protein YP_003147690.1 TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: sfr:Sfri_3824 RarD protein, DMT superfamily transporter YP_003147691.1 PFAM: thioesterase superfamily protein; KEGG: pmy:Pmen_0295 hypothetical protein YP_003147692.1 PFAM: cytochrome c class I; KEGG: maq:Maqu_0461 cytochrome c, class I YP_003147693.1 KEGG: mmw:Mmwyl1_3650 cytochrome c class I YP_003147694.1 TIGRFAM: iron-sulfur cluster binding protein; PFAM: domain of unknown function DUF1730; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: amc:MADE_00643 putative 4Fe-4S binding protein YP_003147695.1 PFAM: protein of unknown function DUF1275; KEGG: shl:Shal_3733 hypothetical protein YP_003147696.1 PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: rme:Rmet_5065 hypothetical protein YP_003147697.1 PFAM: PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: sde:Sde_3981 hypothetical protein YP_003147698.1 KEGG: sun:SUN_1176 hypothetical protein YP_003147699.1 KEGG: psa:PST_3595 hypothetical protein YP_003147700.1 KEGG: pat:Patl_2747 hypothetical protein YP_003147702.1 KEGG: tbd:Tbd_1936 hypothetical protein YP_003147703.1 KEGG: swd:Swoo_3899 hypothetical protein YP_003147706.1 PFAM: WD40 domain protein beta Propeller; peptidase S9B dipeptidylpeptidase IV domain protein; amidohydrolase; KEGG: pha:PSHAa1171 hypothetical protein YP_003147707.1 KEGG: pat:Patl_3631 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; Tetratricopeptide domain protein YP_003147708.1 PFAM: Ferritin Dps family protein; KEGG: pat:Patl_3841 ferritin and Dps YP_003147709.1 PFAM: SirA family protein; KEGG: pha:PSHAa0009 small ubiquitous RNA-binding protein YP_003147710.1 PFAM: protein of unknown function DUF1285; KEGG: pmy:Pmen_1642 hypothetical protein YP_003147712.1 KEGG: hch:HCH_04045 hypothetical protein YP_003147713.1 KEGG: cbd:CBUD_1686 DNA-3-methyladenine glycosylase; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase YP_003147714.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_003147715.1 KEGG: sfx:S4166 glycyl-tRNA synthetase subunit beta; TIGRFAM: glycyl-tRNA synthetase, beta subunit YP_003147716.1 TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; histidinol-phosphate phosphatase family protein; PFAM: Polynucleotide kinase 3 phosphatase central region; KEGG: pst:PSPTO_0186 D,D-heptose 1,7-bisphosphate phosphatase YP_003147717.1 KEGG: maq:Maqu_0638 NAD-dependent epimerase/dehydratase YP_003147718.1 PFAM: protein of unknown function DUF481; KEGG: tgr:Tgr7_2791 hypothetical protein YP_003147719.1 KEGG: psb:Psyr_0044 hexapaptide repeat-containing transferase YP_003147720.1 KEGG: sdn:Sden_3424 GGDEF domain-containing protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein YP_003147721.1 KEGG: tmz:Tmz1t_1794 hypothetical protein YP_003147722.1 PFAM: GumN family protein; KEGG: pha:PSHAa2777 hypothetical protein YP_003147723.1 PFAM: ExoV-like protein; KEGG: pol:Bpro_4932 hypothetical protein YP_003147724.1 catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense YP_003147725.1 PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: sfr:Sfri_3931 CDP- glycerol:poly(glycerophosphate) glycerophosphotransferase YP_003147726.1 TIGRFAM: cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; KEGG: cps:CPS_4205 glycerol-3-phosphate cytidyltransferase YP_003147727.1 PFAM: glycosyl transferase family 2; KEGG: sdn:Sden_0206 glycosyl transferase family protein YP_003147728.1 PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: aha:AHA_0092 oligopeptidase A YP_003147729.1 PFAM: carbohydrate kinase FGGY; KEGG: maq:Maqu_1344 carbohydrate kinase, FGGY YP_003147731.1 PFAM: regulatory protein TetR; KEGG: bba:Bd3675 transcriptional regulator YP_003147732.1 KEGG: cps:CPS_1653 hypothetical protein YP_003147733.1 KEGG: mgm:Mmc1_0540 hypothetical protein YP_003147734.1 KEGG: sdn:Sden_0608 hypothetical protein YP_003147735.1 PFAM: protein of unknown function DUF1415; KEGG: ilo:IL2495 hypothetical protein YP_003147736.1 KEGG: tcx:Tcr_1907 divalent heavy-metal cations transporter YP_003147737.1 PFAM: Uracil-DNA glycosylase superfamily; KEGG: ilo:IL2499 uracil-DNA glycosylase YP_003147738.1 PFAM: pseudouridine synthase; KEGG: sse:Ssed_1515 pseudouridine synthase YP_003147739.1 PFAM: protein of unknown function DUF548; KEGG: cps:CPS_0138 hypothetical protein YP_003147740.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: amc:MADE_03907 peptidyl-prolyl cis-trans isomerase C YP_003147741.1 TIGRFAM: methyltransferase; PFAM: Protein of unknown function methylase putative; methyltransferase small; KEGG: asu:Asuc_0444 putative methyltransferase YP_003147742.1 KEGG: csa:Csal_2989 signal recognition particle- docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase YP_003147743.1 KEGG: hch:HCH_00573 ATPase involved in cell division; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase YP_003147744.1 PFAM: protein of unknown function DUF214; KEGG: hch:HCH_00574 cell division protein YP_003147745.1 PFAM: YceI family protein; KEGG: pla:Plav_1988 YceI family protein YP_003147746.1 TIGRFAM: RNA polymerase sigma factor RpoH; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: psa:PST_3989 RNA polymerase factor sigma-32 YP_003147747.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: aha:AHA_1221 amino acid ABC transporter periplasmic protein YP_003147748.1 KEGG: vvy:VV1082 hypothetical protein YP_003147749.1 PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: smt:Smal_3924 phospholipid/glycerol acyltransferase YP_003147750.1 KEGG: slo:Shew_3511 acyl carrier protein, putative YP_003147751.1 PFAM: phosphopantetheine-binding; KEGG: ilo:IL0128 acyl carrier protein YP_003147752.1 KEGG: sfr:Sfri_0350 hypothetical protein YP_003147753.1 KEGG: sse:Ssed_0322 hypothetical protein YP_003147754.1 KEGG: psp:PSPPH_0425 AMP-binding enzyme family protein YP_003147755.1 PFAM: glycosyl transferase family 2; KEGG: saz:Sama_3384 glycosyl transferase, group 2 family protein YP_003147756.1 PFAM: phenylalanine/histidine ammonia-lyase; KEGG: vpa:VP0889 putative histidine ammonia-lyase protein YP_003147757.1 PFAM: thioesterase superfamily protein; KEGG: rme:Rmet_4384 thioesterase superfamily YP_003147758.1 KEGG: vpa:VP0887 hypothetical protein YP_003147759.1 KEGG: ppr:PBPRB0109 hypothetical protein YP_003147760.1 PFAM: tryptophan halogenase; FAD dependent oxidoreductase; KEGG: sbp:Sbal223_0340 monooxygenase FAD-binding YP_003147761.1 KEGG: vsp:VS_0774 hypothetical protein YP_003147762.1 PFAM: Beta-ketoacyl synthase; KEGG: pfo:Pfl01_0425 3-oxoacyl-(acyl carrier protein) synthase I YP_003147763.1 PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: swp:swp_0291 thioester dehydrase family protein YP_003147764.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cja:CJA_0116 putative 3-oxoacyl-(acyl-carrier- protein) reductase YP_003147765.1 PFAM: Beta-ketoacyl synthase; KEGG: vvu:VV1_0061 3-oxoacyl-(acyl carrier protein) synthase II YP_003147766.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: tbd:Tbd_2563 CDP-6-deoxy-delta-3,4-glucoseen reductase YP_003147767.1 TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; KEGG: cja:CJA_0362 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_003147768.1 TIGRFAM: TonB family protein; KEGG: spc:Sputcn32_1521 TonB family protein YP_003147769.1 KEGG: vfi:VF_0058 transcription termination factor Rho; TIGRFAM: transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; Ribonuclease B OB region domain; Rho termination factor domain protein; Rho termination factor RNA-binding; SMART: Cold shock protein; AAA ATPase YP_003147770.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: azo:azo1030 thioredoxin-disulfide reductase YP_003147771.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: sdn:Sden_0449 ATP-dependent RNA helicase RhlB YP_003147774.1 PFAM: thioesterase superfamily protein; KEGG: smt:Smal_0209 thioesterase superfamily protein YP_003147775.1 KEGG: mxa:MXAN_5548 hypothetical protein YP_003147776.1 TIGRFAM: conserved repeat domain protein; PFAM: Ig family protein; KEGG: sde:Sde_0798 hypothetical protein YP_003147777.1 KEGG: xcb:XC_4295 hypothetical protein YP_003147778.1 PFAM: GCN5-related N-acetyltransferase; KEGG: gur:Gura_1347 GCN5-related N- acetyltransferase YP_003147779.1 PFAM: Tail Collar domain protein; KEGG: sit:TM1040_3288 phage tail collar YP_003147780.1 PFAM: Tail Collar domain protein; KEGG: sit:TM1040_3287 phage tail collar YP_003147781.1 PFAM: Tail Collar domain protein; KEGG: sde:Sde_3328 UDP-N-acetylmuramate:L-alanyl- gamma-D-glutamyl-meso-diaminopimelate ligase YP_003147782.1 KEGG: mlo:mll4444 hypothetical protein YP_003147784.1 KEGG: cja:CJA_0234 putative lipoprotein YP_003147785.1 PFAM: Auxin Efflux Carrier; KEGG: pmy:Pmen_0671 auxin efflux carrier YP_003147786.1 PFAM: delta-aminolevulinic acid dehydratase; KEGG: asa:ASA_4302 delta-aminolevulinic acid dehydratase YP_003147787.1 PFAM: coproporphyrinogen III oxidase; KEGG: sde:Sde_0025 coproporphyrinogen III oxidase YP_003147788.1 PFAM: SUA5/yciO/yrdC domain; KEGG: saz:Sama_0049 SUA5/YciO/YrdC-like protein YP_003147789.1 KEGG: slo:Shew_1230 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase YP_003147790.1 PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Thioredoxin domain; KEGG: maq:Maqu_3826 redoxin domain-containing protein YP_003147791.1 PFAM: protein of unknown function DUF494; KEGG: aeh:Mlg_2631 hypothetical protein YP_003147792.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: noc:Noc_3012 smf protein YP_003147793.1 PFAM: Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: cja:CJA_3583 LysM domain protein YP_003147794.1 KEGG: tgr:Tgr7_0195 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase YP_003147795.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: vco:VC0395_A2474 methionyl-tRNA formyltransferase YP_003147796.1 TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: tcx:Tcr_0191 sun protein YP_003147797.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: aha:AHA_0255 potassium transporter peripheral membrane component YP_003147798.1 TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: cps:CPS_0015 trk system potassium uptake protein TrkH YP_003147799.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: maq:Maqu_0793 lipid A biosynthesis acyltransferase YP_003147800.1 PFAM: DSBA oxidoreductase; KEGG: mca:MCA2602 thiol:disulfide interchange protein DsbA YP_003147801.1 TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase class-II; sugar isomerase (SIS); KEGG: sdn:Sden_3743 glucosamine--fructose-6- phosphate aminotransferase, isomerizing YP_003147802.1 TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: Nucleotidyl transferase; transferase hexapeptide repeat containing protein; KEGG: vch:VC2762 bifunctional N-acetylglucosamine-1- phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase YP_003147803.1 TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: H+transporting two-sector ATPase delta/epsilon subunit; KEGG: cja:CJA_3808 ATP synthase F1, epsilon subunit YP_003147804.1 KEGG: ypk:y4135 F0F1 ATP synthase subunit beta; TIGRFAM: ATP synthase F1, beta subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: AAA ATPase YP_003147805.1 KEGG: pap:PSPA7_6357 F0F1 ATP synthase subunit gamma; TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+transporting two-sector ATPase gamma subunit YP_003147806.1 KEGG: slo:Shew_3847 F0F1 ATP synthase subunit alpha; TIGRFAM: ATP synthase F1, alpha subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein YP_003147807.1 TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; KEGG: pfo:Pfl01_5733 F0F1 ATP synthase subunit delta YP_003147808.1 TIGRFAM: ATP synthase F0, B subunit; PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: pat:Patl_4299 F0F1 ATP synthase subunit B YP_003147809.1 TIGRFAM: ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit; KEGG: pfl:PFL_6221 F0F1 ATP synthase subunit C YP_003147810.1 TIGRFAM: ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit; KEGG: sbm:Shew185_4371 F0F1 ATP synthase subunit A YP_003147811.1 PFAM: ATP synthase I chain; KEGG: saz:Sama_3651 ATP synthase protein I YP_003147812.1 KEGG: pha:PSHAa3016 partitioning protein B; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease YP_003147813.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: maq:Maqu_3884 cobyrinic acid a,c-diamide synthase YP_003147814.1 TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: mmw:Mmwyl1_4472 methyltransferase GidB YP_003147815.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_003147816.1 PFAM: Abortive infection protein; KEGG: baa:BXA0116 CAAX amino terminal protease family protein YP_003147817.1 KEGG: hch:HCH_01028 hypothetical protein YP_003147818.1 PFAM: glycosyl transferase family 2; KEGG: bcb:BCB4264_A3431 polysaccharide deacetylase/glycosyl transferase, group 2 family protein YP_003147819.1 TIGRFAM: tRNA modification GTPase TrmE; small GTP- binding protein; PFAM: GTP-binding protein HSR1-related; Miro domain protein; KEGG: hch:HCH_07086 tRNA modification GTPase TrmE YP_003147820.1 PFAM: 60 kDa inner membrane insertion protein; KEGG: asu:Asuc_2114 putative inner membrane protein translocase component YidC YP_003147821.1 PFAM: protein of unknown function DUF37; KEGG: dac:Daci_6057 hypothetical protein YP_003147822.1 TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: aha:AHA_4283 ribonuclease P protein component YP_003147823.1 TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; KEGG: csa:Csal_3318 50S ribosomal protein L34